Accelerators
AddAttr
AddCharge
AddH
Add hydrogens to structures
AtomDensity
Benchmark
Bld2VRML
BugReport
BuildStructure
CGLtk
Generically useful CGL Tk additions
CGLutil
Generically useful modules
CalcAttr
Categorizer
Categorize atoms into solvent, ligand, etc. categories
ChemGroup
Find chemical groups in a structure
CollaboratoryCORBA
Collaboratory
Initialization code for the Collaboratory Chimera Extension
ColorSS
ColorZone
ConstrainedMove
DBPuppet
DelphiViewer
View Delphi output in Chimera
Demo
DetectClash
DockPrep
EnsembleMatch
FetchEDS
FindHBond
Find hydrogen bonds
FitMap
GraspSurface
Icosahedron
Ilabel
Intersurf
Lighting
ListInfo
MMMD
MSMSSurface
MatchDomains
MatchMaker
MeasureVolume
Midas
Emulate UCSF Midas command set
MinrmsPlot
ModUtil
ModelBrowser
ModelClip
ModelPanel
GUI to perform functions on models
Morph
MovieRecorder
Movie
MultAlignViewer
MultiScale
NeedlemanWunsch
NucleicAcids
OpenSave
Standard open/save panels for Chimera
PBReader
Show pseudobonds described in a file
PDBmatrices
PathLength
Phantom
PipesAndPlanks
PythonModel
Access Chimera OpenGL drawing
ReadMS
ReadStdin
ReadXYZ
ResProp
Color residues by property (e.g. aliphatic)
RibbonStyleEditor
ScaleBar
SessionUtil
Shiny
ShowAttr
SimpleSession
Save/restore most aspects of a Chimera modeling session
SmithWaterman
StructMeasure
Interface to structure measurements (e.g. distances, angles)
StructSeqAlign
SurfaceAreaVolume
SurfaceCallback
SurfaceCap
SurfaceColor
SurfaceZone
Surfnet
SwapRes
Change residue side chains
Texturer
Convenience classes for making small 2D textures
Trajectory
UndoMove
UnitCell
VRMLoutput
ViewDock
VolumeData
VolumeEraser
VolumePath
VolumeViewer
WriteMol2
_LightViewer
_LightViewer module
_align
Interface to the C++ code for reading results from align_O_matic
_amber
_amber module
_chimera
Declarations of basic Chimera classes (Molecule, Atom, etc.)
_closepoints
_closepoints module
_collaboratory
Collaboratory internal modules for speeding up pickling
_contour
_contour module
_cubes
_cubes module
_distances
_distances module
_interpolate
_interpolate module
_multiscale
_multiscale module
_pm
_pm module
_surface
_surface module
_surfacecap
_surfacecap module
_surfnet
_surfnet module
_sw
_sw module
_volume
_volume module
_vrml
_vrml module
blast
chimera
Chimera module
fonts
mmCIF
otf
pdborder
registration