nohup: ignoring input
I0114 23:15:49.290637 140188224374592 af.py:89] Mounting /home/goddard/ucsf -> /mnt/fasta_path_0
I0114 23:15:49.290718 140188224374592 af.py:89] Mounting /home/goddard/ucsf/databases/alphafold21/uniref90 -> /mnt/uniref90_database_path
I0114 23:15:49.290759 140188224374592 af.py:89] Mounting /home/goddard/ucsf/databases/alphafold21/mgnify -> /mnt/mgnify_database_path
I0114 23:15:49.290796 140188224374592 af.py:89] Mounting /home/goddard/ucsf/databases -> /mnt/data_dir
I0114 23:15:49.290830 140188224374592 af.py:89] Mounting /home/goddard/ucsf/databases/alphafold21/pdb_mmcif -> /mnt/template_mmcif_dir
I0114 23:15:49.290863 140188224374592 af.py:89] Mounting /home/goddard/ucsf/databases/alphafold21/pdb_mmcif -> /mnt/obsolete_pdbs_path
I0114 23:15:49.290894 140188224374592 af.py:89] Mounting /home/goddard/ucsf/databases/alphafold21/pdb70 -> /mnt/pdb70_database_path
I0114 23:15:49.290927 140188224374592 af.py:89] Mounting /home/goddard/ucsf/databases/alphafold21/uniclust30/uniclust30_2018_08 -> /mnt/uniclust30_database_path
I0114 23:15:49.290968 140188224374592 af.py:89] Mounting /home/goddard/ucsf/databases/alphafold21/bfd -> /mnt/bfd_database_path
I0114 23:15:55.683918 140188224374592 af.py:224] I0115 07:15:55.682530 139705003647168 templates.py:857] Using precomputed obsolete pdbs /mnt/obsolete_pdbs_path/obsolete.dat.
I0114 23:15:56.408443 140188224374592 af.py:224] I0115 07:15:56.407967 139705003647168 xla_bridge.py:244] Unable to initialize backend 'tpu_driver': NOT_FOUND: Unable to find driver in registry given worker:
I0114 23:15:56.552464 140188224374592 af.py:224] I0115 07:15:56.552037 139705003647168 xla_bridge.py:244] Unable to initialize backend 'tpu': INVALID_ARGUMENT: TpuPlatform is not available.
I0114 23:16:02.034072 140188224374592 af.py:224] I0115 07:16:02.033434 139705003647168 run_alphafold.py:385] Have 5 models: ['model_1', 'model_2', 'model_3', 'model_4', 'model_5']
I0114 23:16:02.034173 140188224374592 af.py:224] I0115 07:16:02.033532 139705003647168 run_alphafold.py:397] Using random seed 472420091298164973 for the data pipeline
I0114 23:16:02.034230 140188224374592 af.py:224] I0115 07:16:02.033681 139705003647168 run_alphafold.py:150] Predicting seq_7m1p
I0114 23:16:02.037751 140188224374592 af.py:224] I0115 07:16:02.037468 139705003647168 jackhmmer.py:130] Launching subprocess "/usr/bin/jackhmmer -o /dev/null -A /tmp/tmpeisoo07l/output.sto --noali --F1 0.0005 --F2 5e-05 --F3 5e-07 --incE 0.0001 -E 0.0001 --cpu 8 -N 1 /mnt/fasta_path_0/seq_7m1p.fasta /mnt/uniref90_database_path/uniref90.fasta"
I0114 23:16:02.077206 140188224374592 af.py:224] I0115 07:16:02.076722 139705003647168 utils.py:36] Started Jackhmmer (uniref90.fasta) query
I0115 00:20:40.917424 140188224374592 af.py:224] I0115 08:20:39.400536 139705003647168 utils.py:40] Finished Jackhmmer (uniref90.fasta) query in 3877.300 seconds
I0115 01:27:56.278830 140188224374592 af.py:224] I0115 09:27:56.127182 139705003647168 jackhmmer.py:130] Launching subprocess "/usr/bin/jackhmmer -o /dev/null -A /tmp/tmpywbikp3c/output.sto --noali --F1 0.0005 --F2 5e-05 --F3 5e-07 --incE 0.0001 -E 0.0001 --cpu 8 -N 1 /mnt/fasta_path_0/seq_7m1p.fasta /mnt/mgnify_database_path/mgy_clusters_2018_12.fa"
I0115 01:27:56.736746 140188224374592 af.py:224] I0115 09:27:56.734069 139705003647168 utils.py:36] Started Jackhmmer (mgy_clusters_2018_12.fa) query
I0115 02:46:28.038903 140188224374592 af.py:224] I0115 10:46:28.030203 139705003647168 utils.py:40] Finished Jackhmmer (mgy_clusters_2018_12.fa) query in 4711.295 seconds
I0115 03:45:37.765366 140188224374592 af.py:224] /app/run_alphafold.sh: line 3:     8 Killed                  python /app/alphafold/run_alphafold.py "$@"