Mutation Score Visualization

Tom Goddard
April 23, 2026

Heatmaps
Structure coloring
Loss of function "probability density"
Loss of function residue contacts
ChimeraX Mutation Score web page.

Mutation scores list

ChimeraX mutation score list

Mutation heatmap

Mutation heatmap

Heatmap options panel

Coloring structures using mutation scores

Coloring structures from mutation scores

Loss of function probability surfaces

      open ~/ucsf/presentations/group-meeting-apr2026/scripts/probability_map.py
      resattrmap /R attributeName fen_lof resolution 5 minValue 14

Fentanyl loss of function probability density

Loss of function residue contacts

      open ~/ucsf/presentations/group-meeting-apr2026/scripts/contacts.py
      conattr #1/R distance 4 attributeName fen_lof minValue 10 radius .5

Fentanyl loss of function residue contacts