# # Add OpenMM forcefield parameters to the tug mouse mode # for remdesivir calculated by Antechamber. # from os import path, getcwd # Could get GAFF2 and ATP parameters from ISOLIDE # but no ISOLDE for ChimeraX 1 yet. #from chimerax import isolde #idir = path.dirname(isolde.__file__) #idir = '/Users/goddard/ucsf/isolde/isolde/src/' #gaff2 = path.join(idir, 'openmm/amberff/gaff2.xml'), #atp = path.join(idir, 'openmm/amberff/ATP.xml'), dir = getcwd() gaff2 = path.join(dir, 'gaff2.xml') atp = path.join(dir, 'ATP.xml') rdv = path.join(dir, 'rdv.xml') rtp = path.join(dir, 'rtp.xml') ff_params = [gaff2, atp, rdv, rtp] from chimerax.tug.tugatoms import openmm_forcefield_parameters openmm_forcefield_parameters.extend(ff_params)