#
# Commands to make sars-cov-2 main protease movie.
#
# I did this all by hand in ChimeraX and recorded the commands after I was done.
#

# Searched PDB for PanDDA and "sars-cov-2 main protease" and got 92 structures.

open 5RGG 5RGI 5RGH 5RG3 5RG2 5RG1 5RGS 5RGR 5RGK 5RGJ 5RGM 5RGL 5RGO 5RGN 5RGQ 5RGP 5R8T 5REO 5REN 5RFZ 5RFY 5RFR 5RFQ 5RFT 5RFS 5RFV 5RFU 5RFX 5RFW 5RFJ 5RFI 5RFL 5RFK 5RFN 5RFM 5RFP 5RFO 5RG0 5REA 5REC 5REB 5REE 5RED 5REG 5REF 5RE9 5RE8 5RE5 5RE4 5RE7 5RE6 5RFB 5RFA 5RFD 5RFC 5RFF 5RFE 5RFH 5RFG 5REY 5REX 5RF9 5REZ 5RF2 5REP 5RF1 5RES 5RF4 5RER 5RF3 5REU 5RF6 5RET 5RF5 5REW 5RF8 5REV 5RF7 5REI 5REH 5REK 5REJ 5REM 5REL 5RF0 5R84 5R83 5R7Y 5R80 5R82 5R81 5R7Z


# Make dimers from monomers

sym #1-92 assembly 1 copies true


# Close monomers

close #1-92


# Hide stuff atoms and ribbons except ligands

hide cartoons
hide solvent
hide :PEG,DMS,IMD


# Color ligand carbons orange, style sphere

color ligand & C orange
style ligand sphere


# Show surfaces, color light gray, one monomer transparent

surface
color lightgray surfaces
transp #*.2 85


# Show tube ribbon for transparent surface monomers

cartoon #*.2
cartoon style modehelix tube
color #*.2 gold cartoons


# Set window size, background color, lighting, and silhouettes

windowsize 702 569
set bgcolor white
light soft
graphics silhouettes true


# Make molecule fill window.
# Hand positioned then got the numbers for this command with "view matrix".

view matrix camera -0.59514,0.088583,-0.79873,-142,-0.05319,-0.99607,-0.070837,-12.997,-0.80186,0.00032637,0.59751,106.23


# Position label

2dlabel text "PDB code" xpos .1 ypos .1


# Record movie

movie record
mseries #93-184 pause 1
perframe "open modellabel.py" frames 92
wait 93
movie encode mpro.mp4 framerate 2