| 1 | log warn false
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| 2 |
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| 3 | open 4AQ5
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| 4 | cartoon strand adjust .99
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| 5 | position mod #1,1.000000,0.000000,0.000000,0.000000,0.000000,0.000000,-1.000000,0.000000,0.000000,1.000000,0.000000,1.000000
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| 6 | view
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| 7 | del solvent
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| 8 | ribbon
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| 9 | color ligand byelement
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| 10 | lighting depthCueColor black
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| 11 | set silhouettes true silhouetteWidth 2
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| 12 | light full
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| 13 | color #1/A #253494
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| 14 | color #1/B #2c7fb8
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| 15 | color #1/C #41b6c4
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| 16 | color #1/D #a1dab4
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| 17 | color #1/E #ffffcc
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| 18 | save 4aq5.0_chimera_colorbysym_1_1000_1000.png trans true super 3 width 1000 height 1000
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| 19 |
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| 20 | position mod #1,0.534025,-0.845439,-0.007061,22.266113,-0.845439,-0.533918,-0.012811,91.508921,0.007061,0.012811,-0.999893,105.586188
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| 21 | view
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| 22 | del solvent
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| 23 | ribbon
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|---|
| 24 | color ligand byelement
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|---|
| 25 | lighting depthCueColor black
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|---|
| 26 | set silhouettes true silhouetteWidth 2
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|---|
| 27 | light full
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| 28 | color #1/A #253494
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| 29 | color #1/B #2c7fb8
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| 30 | color #1/C #41b6c4
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| 31 | color #1/D #a1dab4
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| 32 | color #1/E #ffffcc
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| 33 | save 4aq5.0_chimera_colorbysym_0_1000_1000.png trans true super 3 width 1000 height 1000
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| 34 |
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| 35 | echo showing surface
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| 36 | surface
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| 37 | color fromatoms target s
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| 38 | light full
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| 39 | view
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| 40 | save 4aq50_symm0_chimera_symm_surface1000_1000.png trans true super 3 width 1000 height 1000
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| 41 | lighting depthCueColor black
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| 42 | lighting depthCue t
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|---|
| 43 | lighting flat
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|---|
| 44 | set sil t
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| 45 | save 4aq50_symm0_chimera_symm_surface_chimera_depthcue1000_1000.png trans true super 3 width 1000 height 1000
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| 46 |
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| 47 | del solvent
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| 48 | ribbon
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| 49 | rainbow chain cmap #d7191c:#fdae61:#ffffbf:#abd9e9:#2c7bb6
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|---|
| 50 | color ligand byelement
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|---|
| 51 | echo showing default images for multiple sizes
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|---|
| 52 | save 4aq5_chimera_1000_1000.png trans true super 3 width 1000 height 1000
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| 53 | echo showing surface
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|---|
| 54 | surface
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| 55 | color fromatoms target s
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|---|
| 56 | light full
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|---|
| 57 | view
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|---|
| 58 | save 4aq5_chimera_surface1000_1000.png trans true super 3 width 1000 height 1000
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| 59 | lighting depthCueColor black
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|---|
| 60 | lighting depthCue t
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|---|
| 61 | lighting flat
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| 62 | set sil t
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| 63 | save 4aq5_chimera_surface_chimera_depthcue1000_1000.png trans true super 3 width 1000 height 1000
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| 64 | close
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| 65 | open ./4aq5.pdb
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| 66 | turn x -90
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| 67 | view
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| 68 | rainbow chain cmap #eff3ff:#bdd7e7:#6baed6:#3182bd:#08519c
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| 69 | light full
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|---|
| 70 | color #1/B:221-242,250-270,282-305,438-463/A:215-236,242-264,278-300,409-430/C:229-250,256-278,292-314,456-480/D:215-236,242-264,278-299,409-430/E:222-243,251-271,286-308,448-470 #f03b20
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| 71 | save 4aq5.0_chimera_tm_1000_1000.png trans true super 3 width 1000 height 1000
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| 72 | lighting depthCueColor black
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|---|
| 73 | lighting depthCue t
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|---|
| 74 |
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| 75 | lighting flat
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|---|
| 76 |
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|---|
| 77 | set sil t
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| 78 | view
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|---|
| 79 | save 4aq5.0_chimera_tm_depthcue1000_1000.png trans true super 3 width 1000 height 1000
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| 80 | echo showing surface
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|---|
| 81 | surface
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| 82 | color fromatoms target s
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|---|
| 83 | light full
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|---|
| 84 | view
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|---|
| 85 | save 4aq5_opm_chimera_tm_surface1000_1000.png trans true super 3 width 1000 height 1000
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| 86 | lighting depthCueColor black
|
|---|
| 87 | lighting depthCue t
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|---|
| 88 | lighting flat
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|---|
| 89 | set sil t
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|---|
| 90 | save 4aq5_opm_chimera_tm_surface_chimera_depthcue1000_1000.png trans true super 3 width 1000 height 1000
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| 91 |
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| 92 | close
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|---|
| 93 | open 4AQ5
|
|---|
| 94 | cartoon strand adjust .99
|
|---|
| 95 | position mod #1,1.000000,0.000000,0.000000,0.000000,0.000000,0.000000,-1.000000,0.000000,0.000000,1.000000,0.000000,1.000000
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|---|
| 96 | view
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|---|
| 97 | del solvent
|
|---|
| 98 | ribbon
|
|---|
| 99 | color ligand byelement
|
|---|
| 100 | lighting depthCueColor black
|
|---|
| 101 | set silhouettes true silhouetteWidth 2
|
|---|
| 102 | light full
|
|---|
| 103 | color #1/A #253494
|
|---|
| 104 | color #1/B #2c7fb8
|
|---|
| 105 | color #1/C #41b6c4
|
|---|
| 106 | color #1/D #a1dab4
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|---|
| 107 | color #1/E #ffffcc
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|---|
| 108 | save 4aq5.1_chimera_colorbysym_1_1000_1000.png trans true super 3 width 1000 height 1000
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| 109 |
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|---|
| 110 | position mod #1,0.534025,-0.845439,-0.007061,22.266113,-0.845439,-0.533918,-0.012811,91.508921,0.007061,0.012811,-0.999893,105.586188
|
|---|
| 111 | view
|
|---|
| 112 | del solvent
|
|---|
| 113 | ribbon
|
|---|
| 114 | color ligand byelement
|
|---|
| 115 | lighting depthCueColor black
|
|---|
| 116 | set silhouettes true silhouetteWidth 2
|
|---|
| 117 | light full
|
|---|
| 118 | color #1/A #253494
|
|---|
| 119 | color #1/B #2c7fb8
|
|---|
| 120 | color #1/C #41b6c4
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|---|
| 121 | color #1/D #a1dab4
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|---|
| 122 | color #1/E #ffffcc
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| 123 | save 4aq5.1_chimera_colorbysym_0_1000_1000.png trans true super 3 width 1000 height 1000
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| 124 |
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| 125 | echo showing surface
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|---|
| 126 | surface
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|---|
| 127 | color fromatoms target s
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|---|
| 128 | light full
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|---|
| 129 | view
|
|---|
| 130 | save 4aq51_symm1_chimera_symm_surface1000_1000.png trans true super 3 width 1000 height 1000
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| 131 | lighting depthCueColor black
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| 132 | lighting depthCue t
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|---|
| 133 | lighting flat
|
|---|
| 134 | set sil t
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|---|
| 135 | save 4aq51_symm1_chimera_symm_surface_chimera_depthcue1000_1000.png trans true super 3 width 1000 height 1000
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| 136 |
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| 137 | del solvent
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|---|
| 138 | ribbon
|
|---|
| 139 | rainbow chain cmap #d7191c:#fdae61:#ffffbf:#abd9e9:#2c7bb6
|
|---|
| 140 | color ligand byelement
|
|---|
| 141 | echo showing default images for multiple sizes
|
|---|
| 142 | save 4aq5_chimera_1000_1000.png trans true super 3 width 1000 height 1000
|
|---|
| 143 | echo showing surface
|
|---|
| 144 | surface
|
|---|
| 145 | color fromatoms target s
|
|---|
| 146 | light full
|
|---|
| 147 | view
|
|---|
| 148 | save 4aq5_chimera_surface1000_1000.png trans true super 3 width 1000 height 1000
|
|---|
| 149 | lighting depthCueColor black
|
|---|
| 150 | lighting depthCue t
|
|---|
| 151 | lighting flat
|
|---|
| 152 | set sil t
|
|---|
| 153 | save 4aq5_chimera_surface_chimera_depthcue1000_1000.png trans true super 3 width 1000 height 1000
|
|---|
| 154 | close
|
|---|
| 155 | open ./4aq5.pdb
|
|---|
| 156 | turn x -90
|
|---|
| 157 | view
|
|---|
| 158 | rainbow chain cmap #eff3ff:#bdd7e7:#6baed6:#3182bd:#08519c
|
|---|
| 159 | light full
|
|---|
| 160 | color #1/B:221-242,250-270,282-305,438-463/A:215-236,242-264,278-300,409-430/C:229-250,256-278,292-314,456-480/D:215-236,242-264,278-299,409-430/E:222-243,251-271,286-308,448-470 #f03b20
|
|---|
| 161 | save 4aq5.1_chimera_tm_1000_1000.png trans true super 3 width 1000 height 1000
|
|---|
| 162 | lighting depthCueColor black
|
|---|
| 163 | lighting depthCue t
|
|---|
| 164 |
|
|---|
| 165 | lighting flat
|
|---|
| 166 |
|
|---|
| 167 | set sil t
|
|---|
| 168 | view
|
|---|
| 169 | save 4aq5.1_chimera_tm_depthcue1000_1000.png trans true super 3 width 1000 height 1000
|
|---|
| 170 | echo showing surface
|
|---|
| 171 | surface
|
|---|
| 172 | color fromatoms target s
|
|---|
| 173 | light full
|
|---|
| 174 | view
|
|---|
| 175 | save 4aq5_opm_chimera_tm_surface1000_1000.png trans true super 3 width 1000 height 1000
|
|---|
| 176 | lighting depthCueColor black
|
|---|
| 177 | lighting depthCue t
|
|---|
| 178 | lighting flat
|
|---|
| 179 | set sil t
|
|---|
| 180 | save 4aq5_opm_chimera_tm_surface_chimera_depthcue1000_1000.png trans true super 3 width 1000 height 1000
|
|---|
| 181 |
|
|---|
| 182 |
|
|---|
| 183 | #quit
|
|---|
![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
