Ticket #7043: log_chimeraXerror.txt

File log_chimeraXerror.txt, 7.1 KB (added by fatmaouf@…, 4 years ago)

Added by email2trac

Line 
1Traceback (most recent call last):
2 File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\session.py", line 280, in process
3 data = sm.take_snapshot(obj, session, self.state_flags)
4 File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\seq-view\tool.py", line 656, in take_snapshot
5 'ToolInstance': ToolInstance.take_snapshot(self, session, flags),
6 File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\tools.py", line 96, in take_snapshot
7 data['shown'] = self.tool_window.shown
8 File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\ui\gui.py", line 1908, in shown
9 return self.__toolkit.shown
10 File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\ui\gui.py", line 2187, in shown
11 return not self.dock_widget.isHidden()
12RuntimeError: wrapped C/C++ object of type QDockWidget has been deleted
13
14The above exception was the direct cause of the following exception:
15
16Traceback (most recent call last):
17 File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\session.py", line 259, in discovery
18 self.processed[key] = self.process(obj, parents)
19 File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\session.py", line 283, in process
20 raise RuntimeError(msg) from e
21RuntimeError: Error while saving session data for 'tools' -> <chimerax.core.tools.Tools object at 0x00000211CD52A508> -> <chimerax.seq-view.tool.SequenceViewer object at 0x00000211E6999DC8>
22
23During handling of the above exception, another exception occurred:
24
25Traceback (most recent call last):
26 File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\session.py", line 826, in save
27 session.save(output, version=version, include_maps=include_maps)
28 File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\session.py", line 583, in save
29 mgr.discovery(self._state_containers)
30 File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\session.py", line 261, in discovery
31 raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e))
32ValueError: error processing: 'tools' -> <chimerax.core.tools.Tools object at 0x00000211CD52A508> -> <chimerax.seq-view.tool.SequenceViewer object at 0x00000211E6999DC8>: Error while saving session data for 'tools' -> <chimerax.core.tools.Tools object at 0x00000211CD52A508> -> <chimerax.seq-view.tool.SequenceViewer object at 0x00000211E6999DC8>
33
34ValueError: error processing: 'tools' -> -> : Error while saving session data for 'tools' -> ->
35
36File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\session.py", line 261, in discovery
37raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e))
38
39See log for complete Python traceback.
40
41Traceback (most recent call last):
42 File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\session.py", line 280, in process
43 data = sm.take_snapshot(obj, session, self.state_flags)
44 File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\seq-view\tool.py", line 656, in take_snapshot
45 'ToolInstance': ToolInstance.take_snapshot(self, session, flags),
46 File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\tools.py", line 96, in take_snapshot
47 data['shown'] = self.tool_window.shown
48 File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\ui\gui.py", line 1908, in shown
49 return self.__toolkit.shown
50 File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\ui\gui.py", line 2187, in shown
51 return not self.dock_widget.isHidden()
52RuntimeError: wrapped C/C++ object of type QDockWidget has been deleted
53
54The above exception was the direct cause of the following exception:
55
56Traceback (most recent call last):
57 File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\session.py", line 259, in discovery
58 self.processed[key] = self.process(obj, parents)
59 File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\session.py", line 283, in process
60 raise RuntimeError(msg) from e
61RuntimeError: Error while saving session data for 'tools' -> <chimerax.core.tools.Tools object at 0x00000211CD52A508> -> <chimerax.seq-view.tool.SequenceViewer object at 0x00000211E6999DC8>
62
63During handling of the above exception, another exception occurred:
64
65Traceback (most recent call last):
66 File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\ui\gui.py", line 1574, in <lambda>
67 action.triggered.connect(lambda arg, cb = callback: cb())
68 File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\save_command\dialog.py", line 102, in <lambda>
69 lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output file",
70 File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\save_command\dialog.py", line 113, in show_save_file_dialog
71 _dlg.display(session, **kw)
72 File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\save_command\dialog.py", line 48, in display
73 run(session, cmd)
74 File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\commands\run.py", line 31, in run
75 results = command.run(text, log=log)
76 File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\commands\cli.py", line 2805, in run
77 result = ci.function(session, **kw_args)
78 File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\save_command\cmd.py", line 66, in cmd_save
79 Command(session, registry=registry).run(provider_cmd_text, log=log)
80 File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\commands\cli.py", line 2805, in run
81 result = ci.function(session, **kw_args)
82 File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\save_command\cmd.py", line 79, in provider_save
83 mgr).save(session, path, **provider_kw)
84 File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\core_formats\__init__.py", line 79, in save
85 return cxs_save(session, path, **kw)
86 File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\session.py", line 826, in save
87 session.save(output, version=version, include_maps=include_maps)
88 File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\session.py", line 583, in save
89 mgr.discovery(self._state_containers)
90 File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\session.py", line 261, in discovery
91 raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e))
92ValueError: error processing: 'tools' -> <chimerax.core.tools.Tools object at 0x00000211CD52A508> -> <chimerax.seq-view.tool.SequenceViewer object at 0x00000211E6999DC8>: Error while saving session data for 'tools' -> <chimerax.core.tools.Tools object at 0x00000211CD52A508> -> <chimerax.seq-view.tool.SequenceViewer object at 0x00000211E6999DC8>
93
94ValueError: error processing: 'tools' -> -> : Error while saving session data for 'tools' -> ->
95
96File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\session.py", line 261, in discovery
97raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e))
98
99See log for complete Python traceback.