![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 2 years ago
Last modified 2 years ago
#10007 closed defect
ChimeraX bug report submission — at Initial Version
| Reported by: | Owned by: | ||
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Sessions | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC)
Description
At some point every time I'm saving a session my files get larger and larger regardless of what I have in them . The session contains no surfsce, just a few proteins that are relatively small - on the order of 200 AA.
I had the same problem two years ago: refe #5139
Then I was provided with a python script to clean up some "zombie"sequences from the session. I tried to run it on the current sessions but it doesn't work.
Log:
UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
> open "/Users/drornoy/Desktop/LH2 helices/LH2 5hB joined.cxs"
Log from Tue Oct 17 18:44:05 2023UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
> open "/Users/drornoy/Desktop/LH2 helices/LH2 5hB joined.cxs" format session
Log from Tue Oct 17 18:18:24 2023UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
> open "/Users/drornoy/Desktop/LH2 helices/LH2 5hB combined.cxs" format
> session
Log from Tue Oct 17 14:26:21 2023UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
> open "/Users/drornoy/Desktop/LH2 helices/LH2 5hB combined.cxs" format
> session
Frozen name "ChlideX2" not restored: nothing is selected by specifier
Log from Tue Oct 17 13:50:43 2023UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
> open "/Users/drornoy/Desktop/LH2 helices/LH2 5hB design p_ap_p_p_ap Chl prot
> interactions.cxs"
Log from Wed Aug 16 16:38:24 2023UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
> open "/Users/drornoy/Desktop/LH2 helices/LH2 5hB design p_ap_p_p_ap
> packing.cxs" format session
Log from Wed Aug 16 15:24:32 2023UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open 7pbw format mmcif fromDatabase pdb
7pbw title:
Cryo-EM structure of light harvesting complex 2 from Rba. sphaeroides. [more
info...]
Chain information for 7pbw #1
---
Chain | Description | UniProt
AA AB AC AD AE AF AG AH AI | Light-harvesting protein B-800/850 alpha chain |
LHA2_RHOS4 1-50
BA BB BC BD BE BF BG BH BI | Light-harvesting protein B-800/850 beta chain |
LHB2_RHOS4 5-51
Non-standard residues in 7pbw #1
---
7OT — spheroidene
((6E,10E,12E,14E,16E,18E,20E,22E,24E,26E,28E)-31-methoxy-2,6,10,14,19,23,27,31-octamethyl-
dotriaconta-2,6,10,12,14,16,18,20,22,24,26,28-dodecaene)
BCL — bacteriochlorophyll A
CA — calcium ion
LDA — lauryl dimethylamine-N-oxide
> select protein
6525 atoms, 6696 bonds, 873 residues, 1 model selected
> style sel stick
Changed 6525 atom styles
> hide sel atoms
> show sel cartoons
> select helix
5310 atoms, 5427 bonds, 720 residues, 1 model selected
> ui tool show "Show Sequence Viewer"
> sequence chain /BA /BB /BC /BD /BE /BF /BG /BH /BI
Alignment identifier is 1
> sequence chain /AA /AB /AC /AD /AE /AF /AG /AH /AI
Alignment identifier is 2
> select /AA:5-50/BA:14-47
590 atoms, 603 bonds, 80 residues, 1 model selected
> select /AA:17-50/BA:14-47
496 atoms, 506 bonds, 68 residues, 1 model selected
> select /AA:5-50/BA:14-47
590 atoms, 603 bonds, 80 residues, 1 model selected
> select /AA:11-50/BA:14-47
537 atoms, 548 bonds, 74 residues, 1 model selected
> select /AA:11-38/BA:14-47
443 atoms, 449 bonds, 62 residues, 1 model selected
> select /AA:11-38/BA:14-41
408 atoms, 414 bonds, 56 residues, 1 model selected
> select /AA:11-38/BA:14-47
443 atoms, 449 bonds, 62 residues, 1 model selected
> select /AA:11-38/BA:20-47
401 atoms, 407 bonds, 56 residues, 1 model selected
> save "/Users/drornoy/Desktop/LH2 helices/LH2 spaeroides 7pbw.cxs"
> save "/Users/drornoy/Desktop/LH2 helices/LH2_Sphaeroides.pdb" relModel #1
> open "/Users/drornoy/Desktop/LH2 helices/LH2_Sphaeroides.pdb"
Summary of feedback from opening /Users/drornoy/Desktop/LH2
helices/LH2_Sphaeroides.pdb
---
warnings | Cannot find LINK/SSBOND residue CA (102 )
Cannot find LINK/SSBOND residue CA (102 )
Cannot find LINK/SSBOND residue CA (102 )
Cannot find LINK/SSBOND residue CA (102 )
Cannot find LINK/SSBOND residue CA (102 )
31 messages similar to the above omitted
Chain information for LH2_Sphaeroides.pdb #2
---
Chain | Description
AA AB AC AD AE AF AG AH AI | No description available
BA BB BC BD BE BF BG BH BI | No description available
> hide #!1 models
> select #2/AA:11-38/BA:20-47
401 atoms, 407 bonds, 56 residues, 1 model selected
> ui tool show "Change Chain IDs"
> changechains sel BI R
No residues specified have any of the 'from' chain IDs
> changechains BI R
Chain IDs of 130 residues changed
> changechains BH Q
Chain IDs of 128 residues changed
> changechains BG P
Chain IDs of 130 residues changed
> changechains BF O
Chain IDs of 124 residues changed
> changechains BE N
Chain IDs of 128 residues changed
> changechains BD M
Chain IDs of 126 residues changed
> changechains BC L
Chain IDs of 132 residues changed
> changechains BB K
Chain IDs of 132 residues changed
> changechains BA J
Chain IDs of 124 residues changed
> changechains AA,AB,AC,AD,AE,AF,AG,AH,AI A,B,C,D,E,F,G,H,I
Chain IDs of 1214 residues changed
> select #2/A:11-38/J:20-47
401 atoms, 407 bonds, 56 residues, 1 model selected
> save "/Users/drornoy/Desktop/LH2 helices/LH2_Sphaeroides.pdb"
> select protein
13050 atoms, 13392 bonds, 1746 residues, 2 models selected
> hide sel & #!2 atoms
> show sel & #!2 cartoons
> select helix
10620 atoms, 10854 bonds, 1440 residues, 2 models selected
> select clear
> close session
> open "/Users/drornoy/Desktop/LH2 helices/LH2_Sphaeroides.pdb" format pdb
Chain information for LH2_Sphaeroides.pdb
---
Chain | Description
1.1/A 1.2/A 1.1/B 1.2/B 1.1/C 1.2/C 1.1/D 1.2/D 1.1/E 1.2/E 1.1/F 1.2/F 1.1/G
1.2/G 1.1/H 1.2/H 1.1/I 1.2/I | No description available
1.1/J 1.2/J 1.1/K 1.2/K 1.1/L 1.2/L 1.1/M 1.2/M 1.1/N 1.2/N 1.1/O 1.2/O 1.1/P
1.2/P 1.1/Q 1.2/Q 1.1/R 1.2/R | No description available
> select protein
13050 atoms, 13392 bonds, 1746 residues, 2 models selected
> style sel stick
Changed 13050 atom styles
> hide sel atoms
> show sel cartoons
> select #2/A:11-38/J:20-47
Nothing selected
> select /A:11-38/J:20-47
802 atoms, 814 bonds, 112 residues, 2 models selected
> select /A-B:11-38/J-K:20-47
1604 atoms, 1628 bonds, 224 residues, 2 models selected
> select /A-B:11-38,BCL/J-K:20-47,BCL
2396 atoms, 2468 bonds, 48 pseudobonds, 236 residues, 4 models selected
> select ~/A-B:11-38,BCL/J-K:20-47,BCL
16604 atoms, 16506 bonds, 246 pseudobonds, 2132 residues, 5 models selected
> hide sel cartoons
> hide sel atoms
> select /A-B:11-38,BCL/J-K:20-47,BCL and :HIS
Expected a keyword
> select /A-B:11-38,BCL/J-K:20-47,BCL
2396 atoms, 2468 bonds, 48 pseudobonds, 236 residues, 4 models selected
> select /A-B:11-38,BCL/J-K:20-47,BCL & :His
120 atoms, 120 bonds, 12 residues, 2 models selected
> show sel atoms
> select /B:BCL/J:BCL
396 atoms, 420 bonds, 24 pseudobonds, 6 residues, 4 models selected
> select /B:BCL/J:BCL/A:102
528 atoms, 560 bonds, 32 pseudobonds, 8 residues, 4 models selected
> hide sel atoms
> open "/Users/drornoy/Desktop/LH2 helices/LH2 CCCP 4HB.pdb"
Chain information for LH2 CCCP 4HB.pdb #2
---
Chain | Description
A B J K | No description available
> view
> help help:user
> ribbon style /A-B:11-38/J-K:20-47 arrowsH t
> hide #!1 models
> open "/Users/drornoy/Desktop/LH2 helices/CCCP sim LH2 parallel 4HB.pdb"
Summary of feedback from opening /Users/drornoy/Desktop/LH2 helices/CCCP sim
LH2 parallel 4HB.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 1, 1],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, -1.861, 2.650]
Chain information for CCCP sim LH2 parallel 4HB.pdb #3
---
Chain | Description
A B C D | No description available
> hide #3 models
> show #3 models
> hide #3 models
> show #3 models
> hide #3 models
> show #3 models
> hide #2 models
> view
> show #2 models
> hide #2 models
> show #2 models
> hide #3 models
> show #3 models
> hide #3 models
> show #3 models
> view
> select #2@CA
112 atoms, 112 residues, 1 model selected
> select #3@CA
112 atoms, 112 residues, 1 model selected
> align #3@CA toAtoms #2@CA
RMSD between 112 atom pairs is 0.006 angstroms
> view
> hide #2 models
> show #!1 models
> open "/Users/drornoy/Desktop/LH2 helices/CCCP sim LH2 antiparallel 4HB.pdb"
Summary of feedback from opening /Users/drornoy/Desktop/LH2 helices/CCCP sim
LH2 antiparallel 4HB.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, -1.861, 2.650]
Chain information for CCCP sim LH2 antiparallel 4HB.pdb #4
---
Chain | Description
A B C D | No description available
> hide #!1 models
> hide #3 models
> show #3 models
> view
> view sel
> align #4/A@CA/B@CA toAtoms #3/A@CA/B@CA
RMSD between 56 atom pairs is 0.000 angstroms
> show #!1 models
> hide #!1 models
> ribbon style #2-4 arrowsH t
> hide #3 models
> show #3 models
> open "/Users/drornoy/Desktop/LH2 helices/CCCP sim LH2 antiparallel 4HB
> v2.pdb"
Summary of feedback from opening /Users/drornoy/Desktop/LH2 helices/CCCP sim
LH2 antiparallel 4HB v2.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 1.861, 2.650]
Chain information for CCCP sim LH2 antiparallel 4HB v2.pdb #5
---
Chain | Description
A B C D | No description available
> align #5/A@CA/B@CA toAtoms #3/A@CA/B@CA
RMSD between 56 atom pairs is 0.000 angstroms
> select add #4
672 atoms, 556 bonds, 224 residues, 2 models selected
> select add #3
1120 atoms, 1112 bonds, 224 residues, 2 models selected
> select add #5
1680 atoms, 1668 bonds, 336 residues, 3 models selected
> hide sel cartoons
> show sel atoms
> select #3-5@CA
336 atoms, 336 residues, 3 models selected
> style sel ball
Changed 336 atom styles
> hide #3 models
> show #3 models
> hide #5 models
> select #3/C:28@CA
1 atom, 1 residue, 1 model selected
> select #3/C:28@CA#5/C:1@CA
2 atoms, 2 residues, 2 models selected
> select #3/C:28@CA#4/C:1@CA
2 atoms, 2 residues, 2 models selected
> ui tool show Distances
> distance #3/C:28@CA #4/C:1@CA
Distance between CCCP sim LH2 parallel 4HB.pdb #3/C GLY 28 CA and CCCP sim LH2
antiparallel 4HB.pdb #4/C GLY 1 CA: 4.343Å
> select #3/D:28@CA#4/D:1@CA
2 atoms, 2 residues, 2 models selected
> distance #3/D:28@CA #4/D:1@CA
Distance between CCCP sim LH2 parallel 4HB.pdb #3/D GLY 28 CA and CCCP sim LH2
antiparallel 4HB.pdb #4/D GLY 1 CA: 4.491Å
> show #5 models
> select #3/C:28@CA#5/C:1@CA
2 atoms, 2 residues, 2 models selected
> distance #3/C:28@CA #5/C:1@CA
Distance between CCCP sim LH2 parallel 4HB.pdb #3/C GLY 28 CA and CCCP sim LH2
antiparallel 4HB v2.pdb #5/C GLY 1 CA: 0.834Å
> hide #4 models
> hide #5 models
> open /Users/drornoy/Downloads/00005.88f5539457fa.allbb.pdb
> /Users/drornoy/Downloads/00004.88f5539457fa.allbb.pdb
> /Users/drornoy/Downloads/00003.88f5539457fa.allbb.pdb
> /Users/drornoy/Downloads/00002.88f5539457fa.allbb.pdb
> /Users/drornoy/Downloads/00001.88f5539457fa.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/00005.88f5539457fa.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.300, 2.650]
Summary of feedback from opening
/Users/drornoy/Downloads/00004.88f5539457fa.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.200, 2.650]
Summary of feedback from opening
/Users/drornoy/Downloads/00003.88f5539457fa.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.100, 2.650]
Summary of feedback from opening
/Users/drornoy/Downloads/00002.88f5539457fa.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2, 2.650]
Summary of feedback from opening
/Users/drornoy/Downloads/00001.88f5539457fa.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 1.900, 2.650]
Chain information for 00005.88f5539457fa.allbb.pdb #7
---
Chain | Description
A B C D | No description available
Chain information for 00004.88f5539457fa.allbb.pdb #8
---
Chain | Description
A B C D | No description available
Chain information for 00003.88f5539457fa.allbb.pdb #9
---
Chain | Description
A B C D | No description available
Chain information for 00002.88f5539457fa.allbb.pdb #10
---
Chain | Description
A B C D | No description available
Chain information for 00001.88f5539457fa.allbb.pdb #11
---
Chain | Description
A B C D | No description available
> align #7/A@CA/B@CA toAtoms #3/A@CA/B@CA
RMSD between 56 atom pairs is 0.000 angstroms
> align #8/A@CA/B@CA toAtoms #3/A@CA/B@CA
RMSD between 56 atom pairs is 0.000 angstroms
> align #9/A@CA/B@CA toAtoms #3/A@CA/B@CA
RMSD between 56 atom pairs is 0.000 angstroms
> align #10/A@CA/B@CA toAtoms #3/A@CA/B@CA
RMSD between 56 atom pairs is 0.000 angstroms
> align #11/A@CA/B@CA toAtoms #3/A@CA/B@CA
RMSD between 56 atom pairs is 0.000 angstroms
> select #6-10@CA
448 atoms, 448 residues, 4 models selected
> select #6-10
2240 atoms, 2224 bonds, 3 pseudobonds, 448 residues, 6 models selected
> hide sel cartoons
> select #6-11
2800 atoms, 2780 bonds, 3 pseudobonds, 560 residues, 7 models selected
> hide sel cartoons
> show sel atoms
> select #6-11@CA
560 atoms, 560 residues, 5 models selected
> style sel ball
Changed 560 atom styles
> show #4 models
> hide #4 models
> show #5 models
> select #3/C:28@CA#11/C:1@CA
2 atoms, 2 residues, 2 models selected
> distance #3/C:28@CA #11/C:1@CA
Distance between CCCP sim LH2 parallel 4HB.pdb #3/C GLY 28 CA and
00001.88f5539457fa.allbb.pdb #11/C GLY 1 CA: 0.808Å
> select #3/C:28@CA#7/C:1@CA
2 atoms, 2 residues, 2 models selected
> distance #3/C:28@CA #7/C:1@CA
Distance between CCCP sim LH2 parallel 4HB.pdb #3/C GLY 28 CA and
00005.88f5539457fa.allbb.pdb #7/C GLY 1 CA: 0.621Å
> hide #8 models
> hide #9 models
> show #9 models
> show #8 models
> close #8-11
> ~distance #3/C:28@CA #7/C:1@CA
> ~distance #3/C:28@CA #5/C:1@CA
> close #7
> open /Users/drornoy/Downloads/00001.301a649c1bd2.allbb.pdb
> /Users/drornoy/Downloads/00005.301a649c1bd2.allbb.pdb
> /Users/drornoy/Downloads/00004.301a649c1bd2.allbb.pdb
> /Users/drornoy/Downloads/00003.301a649c1bd2.allbb.pdb
> /Users/drornoy/Downloads/00002.301a649c1bd2.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/00001.301a649c1bd2.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 2.700]
Summary of feedback from opening
/Users/drornoy/Downloads/00005.301a649c1bd2.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 3.700]
Summary of feedback from opening
/Users/drornoy/Downloads/00004.301a649c1bd2.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 3.450]
Summary of feedback from opening
/Users/drornoy/Downloads/00003.301a649c1bd2.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 3.200]
Summary of feedback from opening
/Users/drornoy/Downloads/00002.301a649c1bd2.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 2.950]
Chain information for 00001.301a649c1bd2.allbb.pdb #7
---
Chain | Description
A B C D | No description available
Chain information for 00005.301a649c1bd2.allbb.pdb #8
---
Chain | Description
A B C D | No description available
Chain information for 00004.301a649c1bd2.allbb.pdb #9
---
Chain | Description
A B C D | No description available
Chain information for 00003.301a649c1bd2.allbb.pdb #10
---
Chain | Description
A B C D | No description available
Chain information for 00002.301a649c1bd2.allbb.pdb #11
---
Chain | Description
A B C D | No description available
> align #7/A@CA/B@CA toAtoms #3/A@CA/B@CA
RMSD between 56 atom pairs is 0.000 angstroms
> align #8/A@CA/B@CA toAtoms #3/A@CA/B@CA
RMSD between 56 atom pairs is 0.000 angstroms
> align #9/A@CA/B@CA toAtoms #3/A@CA/B@CA
RMSD between 56 atom pairs is 0.000 angstroms
> align #10/A@CA/B@CA toAtoms #3/A@CA/B@CA
RMSD between 56 atom pairs is 0.000 angstroms
> align #11/A@CA/B@CA toAtoms #3/A@CA/B@CA
RMSD between 56 atom pairs is 0.000 angstroms
> select #6-11
2800 atoms, 2780 bonds, 2 pseudobonds, 560 residues, 7 models selected
> hide sel cartoons
> hide sel atoms
> show sel atoms
> select #6-11@CA
560 atoms, 560 residues, 5 models selected
> style sel ball
Changed 560 atom styles
> close #7-11
> open /Users/drornoy/Downloads/00005.301a649c1bd2.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/00005.301a649c1bd2.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 3.700]
Chain information for 00005.301a649c1bd2.allbb.pdb #7
---
Chain | Description
A B C D | No description available
> align #7/A@CA/B@CA toAtoms #3/A@CA/B@CA
RMSD between 56 atom pairs is 0.000 angstroms
> select #6-11@CA
112 atoms, 112 residues, 1 model selected
> style sel ball
Changed 112 atom styles
> hide sel cartoons
> show sel atoms
> select #3-5 &~@CA
1344 atoms, 996 bonds, 336 residues, 3 models selected
> hide sel & #3,5 atoms
> show #4 models
> hide #4 models
> hide #!7 models
> show #2 models
> select #2-4 &~@CA
1344 atoms, 996 bonds, 336 residues, 3 models selected
> hide sel & #2#!3 cartoons
> hide sel & #2#!3 atoms
> select #2-4 &@CA
336 atoms, 110 pseudobonds, 336 residues, 5 models selected
> show sel & #2#!3 atoms
> hide #!3 models
> show #!3 models
> style sel & #!2-3 ball
Changed 224 atom styles
> hide #!5 models
> hide #!6 models
> hide #!3 models
> hide #!2 models
> show #!3 models
> show #4 models
> hide #4 models
> show #!5 models
> hide #!5 models
> show #4 models
> select 4 &~@CA
Expected an objects specifier or a keyword
> hide sel & #4#!3 atoms
> show sel & #3-4 atoms
> select #4-7 &~@CA
1344 atoms, 996 bonds, 336 residues, 4 models selected
> hide sel & #4 atoms
> show #!5 models
> hide #!4 models
> hide #!3 models
> show #!7 models
> hide #!5 models
> show #!3 models
> close #7
> open /Users/drornoy/Downloads/5b7b5aed8b04/00009.5b7b5aed8b04.allbb.pdb
> /Users/drornoy/Downloads/5b7b5aed8b04/00001.5b7b5aed8b04.allbb.pdb
> /Users/drornoy/Downloads/5b7b5aed8b04/00001.5b7b5aed8b04.CA.pdb
> /Users/drornoy/Downloads/5b7b5aed8b04/00002.5b7b5aed8b04.allbb.pdb
> /Users/drornoy/Downloads/5b7b5aed8b04/00002.5b7b5aed8b04.CA.pdb
> /Users/drornoy/Downloads/5b7b5aed8b04/00003.5b7b5aed8b04.allbb.pdb
> /Users/drornoy/Downloads/5b7b5aed8b04/00003.5b7b5aed8b04.CA.pdb
> /Users/drornoy/Downloads/5b7b5aed8b04/00004.5b7b5aed8b04.allbb.pdb
> /Users/drornoy/Downloads/5b7b5aed8b04/00004.5b7b5aed8b04.CA.pdb
> /Users/drornoy/Downloads/5b7b5aed8b04/00005.5b7b5aed8b04.allbb.pdb
> /Users/drornoy/Downloads/5b7b5aed8b04/00005.5b7b5aed8b04.CA.pdb
> /Users/drornoy/Downloads/5b7b5aed8b04/00006.5b7b5aed8b04.allbb.pdb
> /Users/drornoy/Downloads/5b7b5aed8b04/00006.5b7b5aed8b04.CA.pdb
> /Users/drornoy/Downloads/5b7b5aed8b04/00007.5b7b5aed8b04.allbb.pdb
> /Users/drornoy/Downloads/5b7b5aed8b04/00007.5b7b5aed8b04.CA.pdb
> /Users/drornoy/Downloads/5b7b5aed8b04/00008.5b7b5aed8b04.allbb.pdb
> /Users/drornoy/Downloads/5b7b5aed8b04/00008.5b7b5aed8b04.CA.pdb
> /Users/drornoy/Downloads/5b7b5aed8b04/00009.5b7b5aed8b04.CA.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/5b7b5aed8b04/00009.5b7b5aed8b04.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 116, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 5.300]
Summary of feedback from opening
/Users/drornoy/Downloads/5b7b5aed8b04/00001.5b7b5aed8b04.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 117, 114, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 5.300]
Summary of feedback from opening
/Users/drornoy/Downloads/5b7b5aed8b04/00001.5b7b5aed8b04.CA.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 117, 114, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 5.300]
Summary of feedback from opening
/Users/drornoy/Downloads/5b7b5aed8b04/00002.5b7b5aed8b04.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 117.250, 114.250, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 5.300]
Summary of feedback from opening
/Users/drornoy/Downloads/5b7b5aed8b04/00002.5b7b5aed8b04.CA.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 117.250, 114.250, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 5.300]
Summary of feedback from opening
/Users/drornoy/Downloads/5b7b5aed8b04/00003.5b7b5aed8b04.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 117.500, 114.500, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 5.300]
Summary of feedback from opening
/Users/drornoy/Downloads/5b7b5aed8b04/00003.5b7b5aed8b04.CA.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 117.500, 114.500, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 5.300]
Summary of feedback from opening
/Users/drornoy/Downloads/5b7b5aed8b04/00004.5b7b5aed8b04.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 117.750, 114.750, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 5.300]
Summary of feedback from opening
/Users/drornoy/Downloads/5b7b5aed8b04/00004.5b7b5aed8b04.CA.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 117.750, 114.750, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 5.300]
Summary of feedback from opening
/Users/drornoy/Downloads/5b7b5aed8b04/00005.5b7b5aed8b04.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118, 115, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 5.300]
Summary of feedback from opening
/Users/drornoy/Downloads/5b7b5aed8b04/00005.5b7b5aed8b04.CA.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118, 115, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 5.300]
Summary of feedback from opening
/Users/drornoy/Downloads/5b7b5aed8b04/00006.5b7b5aed8b04.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.250, 115.250, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 5.300]
Summary of feedback from opening
/Users/drornoy/Downloads/5b7b5aed8b04/00006.5b7b5aed8b04.CA.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.250, 115.250, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 5.300]
Summary of feedback from opening
/Users/drornoy/Downloads/5b7b5aed8b04/00007.5b7b5aed8b04.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.500, 115.500, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 5.300]
Summary of feedback from opening
/Users/drornoy/Downloads/5b7b5aed8b04/00007.5b7b5aed8b04.CA.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.500, 115.500, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 5.300]
Summary of feedback from opening
/Users/drornoy/Downloads/5b7b5aed8b04/00008.5b7b5aed8b04.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.750, 115.750, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 5.300]
Summary of feedback from opening
/Users/drornoy/Downloads/5b7b5aed8b04/00008.5b7b5aed8b04.CA.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.750, 115.750, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 5.300]
Summary of feedback from opening
/Users/drornoy/Downloads/5b7b5aed8b04/00009.5b7b5aed8b04.CA.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 116, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 5.300]
Chain information for 00009.5b7b5aed8b04.allbb.pdb #7
---
Chain | Description
A B C D | No description available
Chain information for 00001.5b7b5aed8b04.allbb.pdb #8
---
Chain | Description
A B C D | No description available
Chain information for 00001.5b7b5aed8b04.CA.pdb #9
---
Chain | Description
A B C D | No description available
Chain information for 00002.5b7b5aed8b04.allbb.pdb #10
---
Chain | Description
A B C D | No description available
Chain information for 00002.5b7b5aed8b04.CA.pdb #11
---
Chain | Description
A B C D | No description available
Chain information for 00003.5b7b5aed8b04.allbb.pdb #12
---
Chain | Description
A B C D | No description available
Chain information for 00003.5b7b5aed8b04.CA.pdb #13
---
Chain | Description
A B C D | No description available
Chain information for 00004.5b7b5aed8b04.allbb.pdb #14
---
Chain | Description
A B C D | No description available
Chain information for 00004.5b7b5aed8b04.CA.pdb #15
---
Chain | Description
A B C D | No description available
Chain information for 00005.5b7b5aed8b04.allbb.pdb #16
---
Chain | Description
A B C D | No description available
Chain information for 00005.5b7b5aed8b04.CA.pdb #17
---
Chain | Description
A B C D | No description available
Chain information for 00006.5b7b5aed8b04.allbb.pdb #18
---
Chain | Description
A B C D | No description available
Chain information for 00006.5b7b5aed8b04.CA.pdb #19
---
Chain | Description
A B C D | No description available
Chain information for 00007.5b7b5aed8b04.allbb.pdb #20
---
Chain | Description
A B C D | No description available
Chain information for 00007.5b7b5aed8b04.CA.pdb #21
---
Chain | Description
A B C D | No description available
Chain information for 00008.5b7b5aed8b04.allbb.pdb #22
---
Chain | Description
A B C D | No description available
Chain information for 00008.5b7b5aed8b04.CA.pdb #23
---
Chain | Description
A B C D | No description available
Chain information for 00009.5b7b5aed8b04.CA.pdb #24
---
Chain | Description
A B C D | No description available
> select #7-24@CA
2016 atoms, 972 pseudobonds, 2016 residues, 27 models selected
> help help:user
> select #7-24
6048 atoms, 5004 bonds, 972 pseudobonds, 2016 residues, 27 models selected
> hide sel cartoons
> hide sel atoms
> select #7-24@CA
2016 atoms, 972 pseudobonds, 2016 residues, 27 models selected
> style sel ball
Changed 2016 atom styles
> show sel atoms
> align #7-24/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
RMSD between 56 atom pairs is 0.010 angstroms
RMSD between 56 atom pairs is 0.045 angstroms
[Repeated 1 time(s)]RMSD between 56 atom pairs is 0.038 angstroms
[Repeated 1 time(s)]RMSD between 56 atom pairs is 0.031 angstroms
[Repeated 1 time(s)]RMSD between 56 atom pairs is 0.024 angstroms
[Repeated 1 time(s)]RMSD between 56 atom pairs is 0.018 angstroms
[Repeated 1 time(s)]RMSD between 56 atom pairs is 0.011 angstroms
[Repeated 1 time(s)]RMSD between 56 atom pairs is 0.004 angstroms
[Repeated 1 time(s)]RMSD between 56 atom pairs is 0.003 angstroms
[Repeated 1 time(s)]RMSD between 56 atom pairs is 0.010 angstroms
> hide #!7 models
> hide #!8 models
> hide #!9 models
> hide #!10 models
> hide #!11 models
> hide #!12 models
> hide #!13 models
> hide #!14 models
> hide #!15 models
> hide #!16 models
> hide #!17 models
> hide #!18 models
> hide #!19 models
> hide #!20 models
> hide #!21 models
> hide #!22 models
> hide #!23 models
> hide #!24 models
> show #!7 models
> hide #!7 models
> show #!8 models
> hide #!8 models
> show #!10 models
> hide #!10 models
> show #!24 models
> show #!23 models
> hide #!23 models
> hide #!24 models
> close #7-24
> open /Users/drornoy/Downloads/5b7b5aed8b04/00009.5b7b5aed8b04.allbb.pdb
> /Users/drornoy/Downloads/5b7b5aed8b04/00001.5b7b5aed8b04.allbb.pdb
> /Users/drornoy/Downloads/5b7b5aed8b04/00002.5b7b5aed8b04.allbb.pdb
> /Users/drornoy/Downloads/5b7b5aed8b04/00003.5b7b5aed8b04.allbb.pdb
> /Users/drornoy/Downloads/5b7b5aed8b04/00004.5b7b5aed8b04.allbb.pdb
> /Users/drornoy/Downloads/5b7b5aed8b04/00005.5b7b5aed8b04.allbb.pdb
> /Users/drornoy/Downloads/5b7b5aed8b04/00006.5b7b5aed8b04.allbb.pdb
> /Users/drornoy/Downloads/5b7b5aed8b04/00007.5b7b5aed8b04.allbb.pdb
> /Users/drornoy/Downloads/5b7b5aed8b04/00008.5b7b5aed8b04.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/5b7b5aed8b04/00009.5b7b5aed8b04.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 116, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 5.300]
Summary of feedback from opening
/Users/drornoy/Downloads/5b7b5aed8b04/00001.5b7b5aed8b04.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 117, 114, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 5.300]
Summary of feedback from opening
/Users/drornoy/Downloads/5b7b5aed8b04/00002.5b7b5aed8b04.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 117.250, 114.250, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 5.300]
Summary of feedback from opening
/Users/drornoy/Downloads/5b7b5aed8b04/00003.5b7b5aed8b04.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 117.500, 114.500, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 5.300]
Summary of feedback from opening
/Users/drornoy/Downloads/5b7b5aed8b04/00004.5b7b5aed8b04.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 117.750, 114.750, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 5.300]
Summary of feedback from opening
/Users/drornoy/Downloads/5b7b5aed8b04/00005.5b7b5aed8b04.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118, 115, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 5.300]
Summary of feedback from opening
/Users/drornoy/Downloads/5b7b5aed8b04/00006.5b7b5aed8b04.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.250, 115.250, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 5.300]
Summary of feedback from opening
/Users/drornoy/Downloads/5b7b5aed8b04/00007.5b7b5aed8b04.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.500, 115.500, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 5.300]
Summary of feedback from opening
/Users/drornoy/Downloads/5b7b5aed8b04/00008.5b7b5aed8b04.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.750, 115.750, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 5.300]
Chain information for 00009.5b7b5aed8b04.allbb.pdb #7
---
Chain | Description
A B C D | No description available
Chain information for 00001.5b7b5aed8b04.allbb.pdb #8
---
Chain | Description
A B C D | No description available
Chain information for 00002.5b7b5aed8b04.allbb.pdb #9
---
Chain | Description
A B C D | No description available
Chain information for 00003.5b7b5aed8b04.allbb.pdb #10
---
Chain | Description
A B C D | No description available
Chain information for 00004.5b7b5aed8b04.allbb.pdb #11
---
Chain | Description
A B C D | No description available
Chain information for 00005.5b7b5aed8b04.allbb.pdb #12
---
Chain | Description
A B C D | No description available
Chain information for 00006.5b7b5aed8b04.allbb.pdb #13
---
Chain | Description
A B C D | No description available
Chain information for 00007.5b7b5aed8b04.allbb.pdb #14
---
Chain | Description
A B C D | No description available
Chain information for 00008.5b7b5aed8b04.allbb.pdb #15
---
Chain | Description
A B C D | No description available
> align #7-15/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
RMSD between 56 atom pairs is 0.010 angstroms
RMSD between 56 atom pairs is 0.045 angstroms
RMSD between 56 atom pairs is 0.038 angstroms
RMSD between 56 atom pairs is 0.031 angstroms
RMSD between 56 atom pairs is 0.024 angstroms
RMSD between 56 atom pairs is 0.018 angstroms
RMSD between 56 atom pairs is 0.011 angstroms
RMSD between 56 atom pairs is 0.004 angstroms
RMSD between 56 atom pairs is 0.003 angstroms
> select #7-24
5040 atoms, 5004 bonds, 1008 residues, 9 models selected
> select #7-15
5040 atoms, 5004 bonds, 1008 residues, 9 models selected
> hide sel cartoons
> hide sel atoms
> select #7-15@CA
1008 atoms, 1008 residues, 9 models selected
> show sel atoms
> style sel ball
Changed 1008 atom styles
> hide #!8 models
> hide #!9 models
> hide #!10 models
> hide #!11 models
> hide #!12 models
> hide #!13 models
> hide #!14 models
> hide #!15 models
> show #!15 models
> hide #!3 models
> hide #!7 models
> show #!7 models
> hide #!7 models
> show #!7 models
> hide #!7 models
> show #!7 models
> hide #!7 models
> show #!7 models
> hide #!7 models
> show #!7 models
> hide #!7 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> show #!7 models
> hide #!7 models
> show #!7 models
> hide #!7 models
> show #!7 models
> hide #!7 models
> show #!7 models
> hide #!7 models
> show #!7 models
> hide #!7 models
> show #!7 models
> hide #!7 models
> show #!7 models
> hide #!7 models
> show #!7 models
> hide #!7 models
> show #!7 models
> hide #!7 models
> show #!7 models
> hide #!7 models
> show #!7 models
> hide #!7 models
> hide #!3 models
> show #!7 models
> hide #!7 models
> show #!7 models
> hide #!7 models
> show #!7 models
> hide #!7 models
> show #!3 models
> hide #!3 models
> show #!7 models
> hide #!15 models
> show #!15 models
> hide #!15 models
> show #!15 models
> hide #!15 models
> show #!15 models
> hide #!15 models
> show #!15 models
> hide #!15 models
> show #!15 models
> hide #!15 models
> show #!15 models
> hide #!15 models
> show #!15 models
> hide #!15 models
> show #!15 models
> close #7-15
> show #!3 models
> open /Users/drornoy/Downloads/31ef15bcf104/00003.31ef15bcf104.allbb.pdb
> /Users/drornoy/Downloads/31ef15bcf104/00004.31ef15bcf104.allbb.pdb
> /Users/drornoy/Downloads/31ef15bcf104/00005.31ef15bcf104.allbb.pdb
> /Users/drornoy/Downloads/31ef15bcf104/00006.31ef15bcf104.allbb.pdb
> /Users/drornoy/Downloads/31ef15bcf104/00007.31ef15bcf104.allbb.pdb
> /Users/drornoy/Downloads/31ef15bcf104/00008.31ef15bcf104.allbb.pdb
> /Users/drornoy/Downloads/31ef15bcf104/00009.31ef15bcf104.allbb.pdb
> /Users/drornoy/Downloads/31ef15bcf104/00001.31ef15bcf104.allbb.pdb
> /Users/drornoy/Downloads/31ef15bcf104/00002.31ef15bcf104.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/31ef15bcf104/00003.31ef15bcf104.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 109.250, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 5.300]
Summary of feedback from opening
/Users/drornoy/Downloads/31ef15bcf104/00004.31ef15bcf104.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 111.375, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 5.300]
Summary of feedback from opening
/Users/drornoy/Downloads/31ef15bcf104/00005.31ef15bcf104.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 113.500, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 5.300]
Summary of feedback from opening
/Users/drornoy/Downloads/31ef15bcf104/00006.31ef15bcf104.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 115.625, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 5.300]
Summary of feedback from opening
/Users/drornoy/Downloads/31ef15bcf104/00007.31ef15bcf104.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 117.750, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 5.300]
Summary of feedback from opening
/Users/drornoy/Downloads/31ef15bcf104/00008.31ef15bcf104.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 119.875, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 5.300]
Summary of feedback from opening
/Users/drornoy/Downloads/31ef15bcf104/00009.31ef15bcf104.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 122, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 5.300]
Summary of feedback from opening
/Users/drornoy/Downloads/31ef15bcf104/00001.31ef15bcf104.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 105, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 5.300]
Summary of feedback from opening
/Users/drornoy/Downloads/31ef15bcf104/00002.31ef15bcf104.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 107.125, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 5.300]
Chain information for 00003.31ef15bcf104.allbb.pdb #7
---
Chain | Description
A B C D | No description available
Chain information for 00004.31ef15bcf104.allbb.pdb #8
---
Chain | Description
A B C D | No description available
Chain information for 00005.31ef15bcf104.allbb.pdb #9
---
Chain | Description
A B C D | No description available
Chain information for 00006.31ef15bcf104.allbb.pdb #10
---
Chain | Description
A B C D | No description available
Chain information for 00007.31ef15bcf104.allbb.pdb #11
---
Chain | Description
A B C D | No description available
Chain information for 00008.31ef15bcf104.allbb.pdb #12
---
Chain | Description
A B C D | No description available
Chain information for 00009.31ef15bcf104.allbb.pdb #13
---
Chain | Description
A B C D | No description available
Chain information for 00001.31ef15bcf104.allbb.pdb #14
---
Chain | Description
A B C D | No description available
Chain information for 00002.31ef15bcf104.allbb.pdb #15
---
Chain | Description
A B C D | No description available
> select #7-15
5040 atoms, 5004 bonds, 1008 residues, 9 models selected
> hide sel cartoons
> hide sel atoms
> select #7-15@CA
1008 atoms, 1008 residues, 9 models selected
> show sel atoms
> style sel ball
Changed 1008 atom styles
> align #7-15/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
RMSD between 56 atom pairs is 0.010 angstroms
[Repeated 8 time(s)]
> hide #!14 models
> hide #!15 models
> hide #!7 models
> hide #!8 models
> hide #!9 models
> hide #!10 models
> hide #!11 models
> hide #!12 models
> hide #!13 models
> show #!13 models
> close #7-15
> open /Users/drornoy/Downloads/f76ef43e5ff5/00001.f76ef43e5ff5.allbb.pdb
> /Users/drornoy/Downloads/f76ef43e5ff5/00002.f76ef43e5ff5.allbb.pdb
> /Users/drornoy/Downloads/f76ef43e5ff5/00003.f76ef43e5ff5.allbb.pdb
> /Users/drornoy/Downloads/f76ef43e5ff5/00004.f76ef43e5ff5.allbb.pdb
> /Users/drornoy/Downloads/f76ef43e5ff5/00005.f76ef43e5ff5.allbb.pdb
> /Users/drornoy/Downloads/f76ef43e5ff5/00006.f76ef43e5ff5.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/f76ef43e5ff5/00001.f76ef43e5ff5.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 123, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 5.300]
Summary of feedback from opening
/Users/drornoy/Downloads/f76ef43e5ff5/00002.f76ef43e5ff5.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 124.800, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 5.300]
Summary of feedback from opening
/Users/drornoy/Downloads/f76ef43e5ff5/00003.f76ef43e5ff5.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 126.600, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 5.300]
Summary of feedback from opening
/Users/drornoy/Downloads/f76ef43e5ff5/00004.f76ef43e5ff5.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 128.400, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 5.300]
Summary of feedback from opening
/Users/drornoy/Downloads/f76ef43e5ff5/00005.f76ef43e5ff5.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 130.200, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 5.300]
Summary of feedback from opening
/Users/drornoy/Downloads/f76ef43e5ff5/00006.f76ef43e5ff5.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 132, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 5.300]
Chain information for 00001.f76ef43e5ff5.allbb.pdb #7
---
Chain | Description
A B C D | No description available
Chain information for 00002.f76ef43e5ff5.allbb.pdb #8
---
Chain | Description
A B C D | No description available
Chain information for 00003.f76ef43e5ff5.allbb.pdb #9
---
Chain | Description
A B C D | No description available
Chain information for 00004.f76ef43e5ff5.allbb.pdb #10
---
Chain | Description
A B C D | No description available
Chain information for 00005.f76ef43e5ff5.allbb.pdb #11
---
Chain | Description
A B C D | No description available
Chain information for 00006.f76ef43e5ff5.allbb.pdb #12
---
Chain | Description
A B C D | No description available
> align #7-12/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
RMSD between 56 atom pairs is 0.010 angstroms
[Repeated 5 time(s)]
> select #7-12
3360 atoms, 3336 bonds, 672 residues, 6 models selected
> hide sel cartoons
> hide sel atoms
> select #7-12@CA
672 atoms, 672 residues, 6 models selected
> style sel ball
Changed 672 atom styles
> show sel atoms
> hide #!12 models
> hide #!11 models
> show #!11 models
> hide #!10 models
> hide #!9 models
> hide #!8 models
> hide #!7 models
> close #7-12
> open /Users/drornoy/Downloads/366152f2476f/00001.366152f2476f.allbb.pdb
> /Users/drornoy/Downloads/366152f2476f/00002.366152f2476f.allbb.pdb
> /Users/drornoy/Downloads/366152f2476f/00003.366152f2476f.allbb.pdb
> /Users/drornoy/Downloads/366152f2476f/00004.366152f2476f.allbb.pdb
> /Users/drornoy/Downloads/366152f2476f/00005.366152f2476f.allbb.pdb
> /Users/drornoy/Downloads/366152f2476f/00006.366152f2476f.allbb.pdb
> /Users/drornoy/Downloads/366152f2476f/00007.366152f2476f.allbb.pdb
> /Users/drornoy/Downloads/366152f2476f/00008.366152f2476f.allbb.pdb
> /Users/drornoy/Downloads/366152f2476f/00009.366152f2476f.allbb.pdb
> /Users/drornoy/Downloads/366152f2476f/00010.366152f2476f.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/366152f2476f/00001.366152f2476f.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 126.600, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 5.500]
Summary of feedback from opening
/Users/drornoy/Downloads/366152f2476f/00002.366152f2476f.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 126.600, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 6]
Summary of feedback from opening
/Users/drornoy/Downloads/366152f2476f/00003.366152f2476f.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 126.600, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 6.500]
Summary of feedback from opening
/Users/drornoy/Downloads/366152f2476f/00004.366152f2476f.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 126.600, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 7]
Summary of feedback from opening
/Users/drornoy/Downloads/366152f2476f/00005.366152f2476f.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 126.600, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 7.500]
Summary of feedback from opening
/Users/drornoy/Downloads/366152f2476f/00006.366152f2476f.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 126.600, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 8]
Summary of feedback from opening
/Users/drornoy/Downloads/366152f2476f/00007.366152f2476f.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 126.600, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 8.500]
Summary of feedback from opening
/Users/drornoy/Downloads/366152f2476f/00008.366152f2476f.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 126.600, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 9]
Summary of feedback from opening
/Users/drornoy/Downloads/366152f2476f/00009.366152f2476f.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 126.600, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 9.500]
Summary of feedback from opening
/Users/drornoy/Downloads/366152f2476f/00010.366152f2476f.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 126.600, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 10]
Chain information for 00001.366152f2476f.allbb.pdb #7
---
Chain | Description
A B C D | No description available
Chain information for 00002.366152f2476f.allbb.pdb #8
---
Chain | Description
A B C D | No description available
Chain information for 00003.366152f2476f.allbb.pdb #9
---
Chain | Description
A B C D | No description available
Chain information for 00004.366152f2476f.allbb.pdb #10
---
Chain | Description
A B C D | No description available
Chain information for 00005.366152f2476f.allbb.pdb #11
---
Chain | Description
A B C D | No description available
Chain information for 00006.366152f2476f.allbb.pdb #12
---
Chain | Description
A B C D | No description available
Chain information for 00007.366152f2476f.allbb.pdb #13
---
Chain | Description
A B C D | No description available
Chain information for 00008.366152f2476f.allbb.pdb #14
---
Chain | Description
A B C D | No description available
Chain information for 00009.366152f2476f.allbb.pdb #15
---
Chain | Description
A B C D | No description available
Chain information for 00010.366152f2476f.allbb.pdb #16
---
Chain | Description
A B C D | No description available
> select #7-16
5600 atoms, 5560 bonds, 1120 residues, 10 models selected
> hide sel atoms
> hide sel cartoons
> select #7-16@CA
1120 atoms, 1120 residues, 10 models selected
> align #7-16/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
RMSD between 56 atom pairs is 0.010 angstroms
[Repeated 9 time(s)]
> select #7-16@CA
1120 atoms, 1120 residues, 10 models selected
> show sel atoms
> style sel ball
Changed 1120 atom styles
> hide #!7 models
> hide #!8 models
> hide #!9 models
> hide #!12 models
> hide #!13 models
> hide #!14 models
> hide #!15 models
> hide #!16 models
> show #!7 models
> hide #!10 models
> hide #!11 models
> close #7-16
> open /Users/drornoy/Downloads/de9a1b362df7/00008.de9a1b362df7.allbb.pdb
> /Users/drornoy/Downloads/de9a1b362df7/00009.de9a1b362df7.allbb.pdb
> /Users/drornoy/Downloads/de9a1b362df7/00010.de9a1b362df7.allbb.pdb
> /Users/drornoy/Downloads/de9a1b362df7/00001.de9a1b362df7.allbb.pdb
> /Users/drornoy/Downloads/de9a1b362df7/00002.de9a1b362df7.allbb.pdb
> /Users/drornoy/Downloads/de9a1b362df7/00003.de9a1b362df7.allbb.pdb
> /Users/drornoy/Downloads/de9a1b362df7/00004.de9a1b362df7.allbb.pdb
> /Users/drornoy/Downloads/de9a1b362df7/00005.de9a1b362df7.allbb.pdb
> /Users/drornoy/Downloads/de9a1b362df7/00006.de9a1b362df7.allbb.pdb
> /Users/drornoy/Downloads/de9a1b362df7/00007.de9a1b362df7.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/de9a1b362df7/00008.de9a1b362df7.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 126.600, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 3.111]
Summary of feedback from opening
/Users/drornoy/Downloads/de9a1b362df7/00009.de9a1b362df7.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 126.600, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 3.556]
Summary of feedback from opening
/Users/drornoy/Downloads/de9a1b362df7/00010.de9a1b362df7.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 126.600, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 4]
Summary of feedback from opening
/Users/drornoy/Downloads/de9a1b362df7/00001.de9a1b362df7.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 126.600, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 0]
Summary of feedback from opening
/Users/drornoy/Downloads/de9a1b362df7/00002.de9a1b362df7.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 126.600, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 0.444]
Summary of feedback from opening
/Users/drornoy/Downloads/de9a1b362df7/00003.de9a1b362df7.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 126.600, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 0.889]
Summary of feedback from opening
/Users/drornoy/Downloads/de9a1b362df7/00004.de9a1b362df7.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 126.600, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 1.333]
Summary of feedback from opening
/Users/drornoy/Downloads/de9a1b362df7/00005.de9a1b362df7.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 126.600, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 1.778]
Summary of feedback from opening
/Users/drornoy/Downloads/de9a1b362df7/00006.de9a1b362df7.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 126.600, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 2.222]
Summary of feedback from opening
/Users/drornoy/Downloads/de9a1b362df7/00007.de9a1b362df7.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 126.600, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 2.667]
Chain information for 00008.de9a1b362df7.allbb.pdb #7
---
Chain | Description
A B C D | No description available
Chain information for 00009.de9a1b362df7.allbb.pdb #8
---
Chain | Description
A B C D | No description available
Chain information for 00010.de9a1b362df7.allbb.pdb #9
---
Chain | Description
A B C D | No description available
Chain information for 00001.de9a1b362df7.allbb.pdb #10
---
Chain | Description
A B C D | No description available
Chain information for 00002.de9a1b362df7.allbb.pdb #11
---
Chain | Description
A B C D | No description available
Chain information for 00003.de9a1b362df7.allbb.pdb #12
---
Chain | Description
A B C D | No description available
Chain information for 00004.de9a1b362df7.allbb.pdb #13
---
Chain | Description
A B C D | No description available
Chain information for 00005.de9a1b362df7.allbb.pdb #14
---
Chain | Description
A B C D | No description available
Chain information for 00006.de9a1b362df7.allbb.pdb #15
---
Chain | Description
A B C D | No description available
Chain information for 00007.de9a1b362df7.allbb.pdb #16
---
Chain | Description
A B C D | No description available
> select #7-16
5600 atoms, 5560 bonds, 1120 residues, 10 models selected
> hide sel atoms
> hide sel cartoons
> select #7-16@CA
1120 atoms, 1120 residues, 10 models selected
> show sel atoms
> style sel ball
Changed 1120 atom styles
> align #7-16/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
RMSD between 56 atom pairs is 0.010 angstroms
[Repeated 9 time(s)]
> hide #!7 models
> hide #!8 models
> hide #!9 models
> hide #!10 models
> hide #!11 models
> hide #!12 models
> hide #!15 models
> hide #!14 models
> hide #!13 models
> show #!15 models
> hide #!15 models
> show #!14 models
> hide #!14 models
> show #!12 models
> hide #!12 models
> close #7-16
> open /Users/drornoy/Downloads/552f64edb791/00003.552f64edb791.allbb.pdb
> /Users/drornoy/Downloads/552f64edb791/00004.552f64edb791.allbb.pdb
> /Users/drornoy/Downloads/552f64edb791/00005.552f64edb791.allbb.pdb
> /Users/drornoy/Downloads/552f64edb791/00006.552f64edb791.allbb.pdb
> /Users/drornoy/Downloads/552f64edb791/00007.552f64edb791.allbb.pdb
> /Users/drornoy/Downloads/552f64edb791/00008.552f64edb791.allbb.pdb
> /Users/drornoy/Downloads/552f64edb791/00009.552f64edb791.allbb.pdb
> /Users/drornoy/Downloads/552f64edb791/00010.552f64edb791.allbb.pdb
> /Users/drornoy/Downloads/552f64edb791/00001.552f64edb791.allbb.pdb
> /Users/drornoy/Downloads/552f64edb791/00002.552f64edb791.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/552f64edb791/00003.552f64edb791.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 124.600, 37.778], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 2.650]
Summary of feedback from opening
/Users/drornoy/Downloads/552f64edb791/00004.552f64edb791.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 125.400, 46.667], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 2.650]
Summary of feedback from opening
/Users/drornoy/Downloads/552f64edb791/00005.552f64edb791.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 126.200, 55.556], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 2.650]
Summary of feedback from opening
/Users/drornoy/Downloads/552f64edb791/00006.552f64edb791.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 127, 64.444], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 2.650]
Summary of feedback from opening
/Users/drornoy/Downloads/552f64edb791/00007.552f64edb791.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 127.800, 73.333], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 2.650]
Summary of feedback from opening
/Users/drornoy/Downloads/552f64edb791/00008.552f64edb791.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 128.600, 82.222], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 2.650]
Summary of feedback from opening
/Users/drornoy/Downloads/552f64edb791/00009.552f64edb791.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 129.400, 91.111], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 2.650]
Summary of feedback from opening
/Users/drornoy/Downloads/552f64edb791/00010.552f64edb791.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 130.200, 100], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 2.650]
Summary of feedback from opening
/Users/drornoy/Downloads/552f64edb791/00001.552f64edb791.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 123, 20], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 2.650]
Summary of feedback from opening
/Users/drornoy/Downloads/552f64edb791/00002.552f64edb791.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 123.800, 28.889], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 2.650]
Chain information for 00003.552f64edb791.allbb.pdb #7
---
Chain | Description
A B C D | No description available
Chain information for 00004.552f64edb791.allbb.pdb #8
---
Chain | Description
A B C D | No description available
Chain information for 00005.552f64edb791.allbb.pdb #9
---
Chain | Description
A B C D | No description available
Chain information for 00006.552f64edb791.allbb.pdb #10
---
Chain | Description
A B C D | No description available
Chain information for 00007.552f64edb791.allbb.pdb #11
---
Chain | Description
A B C D | No description available
Chain information for 00008.552f64edb791.allbb.pdb #12
---
Chain | Description
A B C D | No description available
Chain information for 00009.552f64edb791.allbb.pdb #13
---
Chain | Description
A B C D | No description available
Chain information for 00010.552f64edb791.allbb.pdb #14
---
Chain | Description
A B C D | No description available
Chain information for 00001.552f64edb791.allbb.pdb #15
---
Chain | Description
A B C D | No description available
Chain information for 00002.552f64edb791.allbb.pdb #16
---
Chain | Description
A B C D | No description available
> align #7-16/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
RMSD between 56 atom pairs is 0.010 angstroms
[Repeated 9 time(s)]
> select #7-16
5600 atoms, 5560 bonds, 1120 residues, 10 models selected
> hide sel cartoons
> hide sel atoms
> select #7-16@CA
1120 atoms, 1120 residues, 10 models selected
> show sel atoms
> style sel ball
Changed 1120 atom styles
> hide #!15 models
> hide #!16 models
> show #!16 models
> hide #!14 models
> hide #!13 models
> hide #!12 models
> hide #!11 models
> hide #!10 models
> hide #!9 models
> hide #!8 models
> hide #!7 models
> show #!14 models
> hide #!14 models
> show #!14 models
> hide #!14 models
> show #!12 models
> hide #!12 models
> hide #!16 models
> show #!16 models
> hide #!16 models
> show #!15 models
> show #!16 models
> show #!7 models
> show #!8 models
> hide #!8 models
> hide #!15 models
> hide #!16 models
> show #!8 models
> hide #!7 models
> show #!9 models
> show #!10 models
> hide #!9 models
> hide #!8 models
> show #!11 models
> show #!12 models
> show #!13 models
> hide #!13 models
> close #7-16
> open /Users/drornoy/Downloads/71efc93ad489/00001.71efc93ad489.allbb.pdb
> /Users/drornoy/Downloads/71efc93ad489/00002.71efc93ad489.allbb.pdb
> /Users/drornoy/Downloads/71efc93ad489/00003.71efc93ad489.allbb.pdb
> /Users/drornoy/Downloads/71efc93ad489/00004.71efc93ad489.allbb.pdb
> /Users/drornoy/Downloads/71efc93ad489/00005.71efc93ad489.allbb.pdb
> /Users/drornoy/Downloads/71efc93ad489/00006.71efc93ad489.allbb.pdb
> /Users/drornoy/Downloads/71efc93ad489/00007.71efc93ad489.allbb.pdb
> /Users/drornoy/Downloads/71efc93ad489/00008.71efc93ad489.allbb.pdb
> /Users/drornoy/Downloads/71efc93ad489/00009.71efc93ad489.allbb.pdb
> /Users/drornoy/Downloads/71efc93ad489/00010.71efc93ad489.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/71efc93ad489/00001.71efc93ad489.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 123, 13], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 2.650]
Summary of feedback from opening
/Users/drornoy/Downloads/71efc93ad489/00002.71efc93ad489.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 123.800, 18.222], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 2.650]
Summary of feedback from opening
/Users/drornoy/Downloads/71efc93ad489/00003.71efc93ad489.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 124.600, 23.444], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 2.650]
Summary of feedback from opening
/Users/drornoy/Downloads/71efc93ad489/00004.71efc93ad489.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 125.400, 28.667], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 2.650]
Summary of feedback from opening
/Users/drornoy/Downloads/71efc93ad489/00005.71efc93ad489.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 126.200, 33.889], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 2.650]
Summary of feedback from opening
/Users/drornoy/Downloads/71efc93ad489/00006.71efc93ad489.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 127, 39.111], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 2.650]
Summary of feedback from opening
/Users/drornoy/Downloads/71efc93ad489/00007.71efc93ad489.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 127.800, 44.333], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 2.650]
Summary of feedback from opening
/Users/drornoy/Downloads/71efc93ad489/00008.71efc93ad489.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 128.600, 49.556], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 2.650]
Summary of feedback from opening
/Users/drornoy/Downloads/71efc93ad489/00009.71efc93ad489.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 129.400, 54.778], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 2.650]
Summary of feedback from opening
/Users/drornoy/Downloads/71efc93ad489/00010.71efc93ad489.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 130.200, 60], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 2.650]
Chain information for 00001.71efc93ad489.allbb.pdb #7
---
Chain | Description
A B C D | No description available
Chain information for 00002.71efc93ad489.allbb.pdb #8
---
Chain | Description
A B C D | No description available
Chain information for 00003.71efc93ad489.allbb.pdb #9
---
Chain | Description
A B C D | No description available
Chain information for 00004.71efc93ad489.allbb.pdb #10
---
Chain | Description
A B C D | No description available
Chain information for 00005.71efc93ad489.allbb.pdb #11
---
Chain | Description
A B C D | No description available
Chain information for 00006.71efc93ad489.allbb.pdb #12
---
Chain | Description
A B C D | No description available
Chain information for 00007.71efc93ad489.allbb.pdb #13
---
Chain | Description
A B C D | No description available
Chain information for 00008.71efc93ad489.allbb.pdb #14
---
Chain | Description
A B C D | No description available
Chain information for 00009.71efc93ad489.allbb.pdb #15
---
Chain | Description
A B C D | No description available
Chain information for 00010.71efc93ad489.allbb.pdb #16
---
Chain | Description
A B C D | No description available
> select #7-16
5600 atoms, 5560 bonds, 1120 residues, 10 models selected
> hide sel atoms
> hide sel cartoons
> select #7-16@CA
1120 atoms, 1120 residues, 10 models selected
> show sel atoms
> style sel ball
Changed 1120 atom styles
> align #7-16/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
RMSD between 56 atom pairs is 0.010 angstroms
[Repeated 9 time(s)]
> hide #!16 models
> hide #!8 models
> hide #!9 models
> hide #!10 models
> hide #!11 models
> hide #!12 models
> hide #!13 models
> hide #!14 models
> hide #!15 models
> show #!9 models
> hide #!9 models
> show #!11 models
> hide #!11 models
> hide #!7 models
> show #!16 models
> hide #!16 models
> show #!7 models
> close #7-16
> open /Users/drornoy/Downloads/ee71ffb97b20/00001.ee71ffb97b20.allbb.pdb
> /Users/drornoy/Downloads/ee71ffb97b20/00002.ee71ffb97b20.allbb.pdb
> /Users/drornoy/Downloads/ee71ffb97b20/00003.ee71ffb97b20.allbb.pdb
> /Users/drornoy/Downloads/ee71ffb97b20/00004.ee71ffb97b20.allbb.pdb
> /Users/drornoy/Downloads/ee71ffb97b20/00005.ee71ffb97b20.allbb.pdb
> /Users/drornoy/Downloads/ee71ffb97b20/00006.ee71ffb97b20.allbb.pdb
> /Users/drornoy/Downloads/ee71ffb97b20/00007.ee71ffb97b20.allbb.pdb
> /Users/drornoy/Downloads/ee71ffb97b20/00008.ee71ffb97b20.allbb.pdb
> /Users/drornoy/Downloads/ee71ffb97b20/00009.ee71ffb97b20.allbb.pdb
> /Users/drornoy/Downloads/ee71ffb97b20/00010.ee71ffb97b20.allbb.pdb
> /Users/drornoy/Downloads/ee71ffb97b20/00011.ee71ffb97b20.allbb.pdb
> /Users/drornoy/Downloads/ee71ffb97b20/00012.ee71ffb97b20.allbb.pdb
> /Users/drornoy/Downloads/ee71ffb97b20/00013.ee71ffb97b20.allbb.pdb
> /Users/drornoy/Downloads/ee71ffb97b20/00014.ee71ffb97b20.allbb.pdb
> /Users/drornoy/Downloads/ee71ffb97b20/00015.ee71ffb97b20.allbb.pdb
> /Users/drornoy/Downloads/ee71ffb97b20/00016.ee71ffb97b20.allbb.pdb
> /Users/drornoy/Downloads/ee71ffb97b20/00017.ee71ffb97b20.allbb.pdb
> /Users/drornoy/Downloads/ee71ffb97b20/00018.ee71ffb97b20.allbb.pdb
> /Users/drornoy/Downloads/ee71ffb97b20/00019.ee71ffb97b20.allbb.pdb
> /Users/drornoy/Downloads/ee71ffb97b20/00020.ee71ffb97b20.allbb.pdb
> /Users/drornoy/Downloads/ee71ffb97b20/00021.ee71ffb97b20.allbb.pdb
> /Users/drornoy/Downloads/ee71ffb97b20/00022.ee71ffb97b20.allbb.pdb
> /Users/drornoy/Downloads/ee71ffb97b20/00023.ee71ffb97b20.allbb.pdb
> /Users/drornoy/Downloads/ee71ffb97b20/00024.ee71ffb97b20.allbb.pdb
> /Users/drornoy/Downloads/ee71ffb97b20/00025.ee71ffb97b20.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/ee71ffb97b20/00001.ee71ffb97b20.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 123, 0], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 0]
Summary of feedback from opening
/Users/drornoy/Downloads/ee71ffb97b20/00002.ee71ffb97b20.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 123, 0], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 1]
Summary of feedback from opening
/Users/drornoy/Downloads/ee71ffb97b20/00003.ee71ffb97b20.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 123, 0], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 2]
Summary of feedback from opening
/Users/drornoy/Downloads/ee71ffb97b20/00004.ee71ffb97b20.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 123, 0], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 3]
Summary of feedback from opening
/Users/drornoy/Downloads/ee71ffb97b20/00005.ee71ffb97b20.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 123, 0], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 4]
Summary of feedback from opening
/Users/drornoy/Downloads/ee71ffb97b20/00006.ee71ffb97b20.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 124.800, 12.750], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 0]
Summary of feedback from opening
/Users/drornoy/Downloads/ee71ffb97b20/00007.ee71ffb97b20.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 124.800, 12.750], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 1]
Summary of feedback from opening
/Users/drornoy/Downloads/ee71ffb97b20/00008.ee71ffb97b20.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 124.800, 12.750], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 2]
Summary of feedback from opening
/Users/drornoy/Downloads/ee71ffb97b20/00009.ee71ffb97b20.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 124.800, 12.750], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 3]
Summary of feedback from opening
/Users/drornoy/Downloads/ee71ffb97b20/00010.ee71ffb97b20.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 124.800, 12.750], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 4]
Summary of feedback from opening
/Users/drornoy/Downloads/ee71ffb97b20/00011.ee71ffb97b20.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 126.600, 25.500], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 0]
Summary of feedback from opening
/Users/drornoy/Downloads/ee71ffb97b20/00012.ee71ffb97b20.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 126.600, 25.500], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 1]
Summary of feedback from opening
/Users/drornoy/Downloads/ee71ffb97b20/00013.ee71ffb97b20.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 126.600, 25.500], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 2]
Summary of feedback from opening
/Users/drornoy/Downloads/ee71ffb97b20/00014.ee71ffb97b20.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 126.600, 25.500], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 3]
Summary of feedback from opening
/Users/drornoy/Downloads/ee71ffb97b20/00015.ee71ffb97b20.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 126.600, 25.500], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 4]
Summary of feedback from opening
/Users/drornoy/Downloads/ee71ffb97b20/00016.ee71ffb97b20.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 128.400, 38.250], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 0]
Summary of feedback from opening
/Users/drornoy/Downloads/ee71ffb97b20/00017.ee71ffb97b20.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 128.400, 38.250], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 1]
Summary of feedback from opening
/Users/drornoy/Downloads/ee71ffb97b20/00018.ee71ffb97b20.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 128.400, 38.250], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 2]
Summary of feedback from opening
/Users/drornoy/Downloads/ee71ffb97b20/00019.ee71ffb97b20.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 128.400, 38.250], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 3]
Summary of feedback from opening
/Users/drornoy/Downloads/ee71ffb97b20/00020.ee71ffb97b20.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 128.400, 38.250], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 4]
Summary of feedback from opening
/Users/drornoy/Downloads/ee71ffb97b20/00021.ee71ffb97b20.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 130.200, 51], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 0]
Summary of feedback from opening
/Users/drornoy/Downloads/ee71ffb97b20/00022.ee71ffb97b20.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 130.200, 51], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 1]
Summary of feedback from opening
/Users/drornoy/Downloads/ee71ffb97b20/00023.ee71ffb97b20.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 130.200, 51], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 2]
Summary of feedback from opening
/Users/drornoy/Downloads/ee71ffb97b20/00024.ee71ffb97b20.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 130.200, 51], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 3]
Summary of feedback from opening
/Users/drornoy/Downloads/ee71ffb97b20/00025.ee71ffb97b20.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 130.200, 51], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 4]
Chain information for 00001.ee71ffb97b20.allbb.pdb #7
---
Chain | Description
A B C D | No description available
Chain information for 00002.ee71ffb97b20.allbb.pdb #8
---
Chain | Description
A B C D | No description available
Chain information for 00003.ee71ffb97b20.allbb.pdb #9
---
Chain | Description
A B C D | No description available
Chain information for 00004.ee71ffb97b20.allbb.pdb #10
---
Chain | Description
A B C D | No description available
Chain information for 00005.ee71ffb97b20.allbb.pdb #11
---
Chain | Description
A B C D | No description available
Chain information for 00006.ee71ffb97b20.allbb.pdb #12
---
Chain | Description
A B C D | No description available
Chain information for 00007.ee71ffb97b20.allbb.pdb #13
---
Chain | Description
A B C D | No description available
Chain information for 00008.ee71ffb97b20.allbb.pdb #14
---
Chain | Description
A B C D | No description available
Chain information for 00009.ee71ffb97b20.allbb.pdb #15
---
Chain | Description
A B C D | No description available
Chain information for 00010.ee71ffb97b20.allbb.pdb #16
---
Chain | Description
A B C D | No description available
Chain information for 00011.ee71ffb97b20.allbb.pdb #17
---
Chain | Description
A B C D | No description available
Chain information for 00012.ee71ffb97b20.allbb.pdb #18
---
Chain | Description
A B C D | No description available
Chain information for 00013.ee71ffb97b20.allbb.pdb #19
---
Chain | Description
A B C D | No description available
Chain information for 00014.ee71ffb97b20.allbb.pdb #20
---
Chain | Description
A B C D | No description available
Chain information for 00015.ee71ffb97b20.allbb.pdb #21
---
Chain | Description
A B C D | No description available
Chain information for 00016.ee71ffb97b20.allbb.pdb #22
---
Chain | Description
A B C D | No description available
Chain information for 00017.ee71ffb97b20.allbb.pdb #23
---
Chain | Description
A B C D | No description available
Chain information for 00018.ee71ffb97b20.allbb.pdb #24
---
Chain | Description
A B C D | No description available
Chain information for 00019.ee71ffb97b20.allbb.pdb #25
---
Chain | Description
A B C D | No description available
Chain information for 00020.ee71ffb97b20.allbb.pdb #26
---
Chain | Description
A B C D | No description available
Chain information for 00021.ee71ffb97b20.allbb.pdb #27
---
Chain | Description
A B C D | No description available
Chain information for 00022.ee71ffb97b20.allbb.pdb #28
---
Chain | Description
A B C D | No description available
Chain information for 00023.ee71ffb97b20.allbb.pdb #29
---
Chain | Description
A B C D | No description available
Chain information for 00024.ee71ffb97b20.allbb.pdb #30
---
Chain | Description
A B C D | No description available
Chain information for 00025.ee71ffb97b20.allbb.pdb #31
---
Chain | Description
A B C D | No description available
> align #7-25/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
RMSD between 56 atom pairs is 0.010 angstroms
[Repeated 18 time(s)]
> select #7-25
10640 atoms, 10564 bonds, 2128 residues, 19 models selected
> hide sel atoms
> hide sel cartoons
> select #7-25@CA
2128 atoms, 2128 residues, 19 models selected
> show sel atoms
> style sel ball
Changed 2128 atom styles
> close #26-31#7-25
> open /Users/drornoy/Downloads/00001.54e4c71013b6.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/00001.54e4c71013b6.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 126.600, 12.910], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 2.650]
Chain information for 00001.54e4c71013b6.allbb.pdb #7
---
Chain | Description
A B C D | No description available
> close #7
> open "/Users/drornoy/Desktop/LH2 helices/CCCP sim LH2 antiparallel 4HB
> v2.pdb"
Summary of feedback from opening /Users/drornoy/Desktop/LH2 helices/CCCP sim
LH2 antiparallel 4HB v2.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 1.861, 2.650]
Chain information for CCCP sim LH2 antiparallel 4HB v2.pdb #7
---
Chain | Description
A B C D | No description available
> select #7
560 atoms, 556 bonds, 112 residues, 1 model selected
> hide sel atoms
> hide sel cartoons
> select #7@CA
112 atoms, 112 residues, 1 model selected
> align #7/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
RMSD between 56 atom pairs is 0.000 angstroms
> select #7@CA
112 atoms, 112 residues, 1 model selected
> show sel atoms
> style sel ball
Changed 112 atom styles
> open /Users/drornoy/Downloads/3edcc30bb4f8/00001.3edcc30bb4f8.allbb.pdb
> /Users/drornoy/Downloads/3edcc30bb4f8/00002.3edcc30bb4f8.allbb.pdb
> /Users/drornoy/Downloads/3edcc30bb4f8/00003.3edcc30bb4f8.allbb.pdb
> /Users/drornoy/Downloads/3edcc30bb4f8/00004.3edcc30bb4f8.allbb.pdb
> /Users/drornoy/Downloads/3edcc30bb4f8/00005.3edcc30bb4f8.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/3edcc30bb4f8/00001.3edcc30bb4f8.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 126.600, 12.910], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 2.650]
Summary of feedback from opening
/Users/drornoy/Downloads/3edcc30bb4f8/00002.3edcc30bb4f8.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 126.600, 12.910], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 2.900]
Summary of feedback from opening
/Users/drornoy/Downloads/3edcc30bb4f8/00003.3edcc30bb4f8.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 126.600, 12.910], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 3.150]
Summary of feedback from opening
/Users/drornoy/Downloads/3edcc30bb4f8/00004.3edcc30bb4f8.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 126.600, 12.910], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 3.400]
Summary of feedback from opening
/Users/drornoy/Downloads/3edcc30bb4f8/00005.3edcc30bb4f8.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 126.600, 12.910], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 3.650]
Chain information for 00001.3edcc30bb4f8.allbb.pdb #8
---
Chain | Description
A B C D | No description available
Chain information for 00002.3edcc30bb4f8.allbb.pdb #9
---
Chain | Description
A B C D | No description available
Chain information for 00003.3edcc30bb4f8.allbb.pdb #10
---
Chain | Description
A B C D | No description available
Chain information for 00004.3edcc30bb4f8.allbb.pdb #11
---
Chain | Description
A B C D | No description available
Chain information for 00005.3edcc30bb4f8.allbb.pdb #12
---
Chain | Description
A B C D | No description available
> align #8-12/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
RMSD between 56 atom pairs is 0.010 angstroms
[Repeated 4 time(s)]
> select #7-12
3360 atoms, 3336 bonds, 108 pseudobonds, 672 residues, 7 models selected
> hide sel atoms
> hide sel cartoons
> select #7-12@CA
672 atoms, 672 residues, 6 models selected
> show sel atoms
> style sel ball
Changed 672 atom styles
> close #8-12
> open /Users/drornoy/Downloads/6e2f1d2911de/00001.6e2f1d2911de.allbb.pdb
> /Users/drornoy/Downloads/6e2f1d2911de/00002.6e2f1d2911de.allbb.pdb
> /Users/drornoy/Downloads/6e2f1d2911de/00003.6e2f1d2911de.allbb.pdb
> /Users/drornoy/Downloads/6e2f1d2911de/00004.6e2f1d2911de.allbb.pdb
> /Users/drornoy/Downloads/6e2f1d2911de/00005.6e2f1d2911de.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/6e2f1d2911de/00001.6e2f1d2911de.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 123, -12.910], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 2.650]
Summary of feedback from opening
/Users/drornoy/Downloads/6e2f1d2911de/00002.6e2f1d2911de.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 124.800, -6.455], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 2.650]
Summary of feedback from opening
/Users/drornoy/Downloads/6e2f1d2911de/00003.6e2f1d2911de.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 126.600, 0], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 2.650]
Summary of feedback from opening
/Users/drornoy/Downloads/6e2f1d2911de/00004.6e2f1d2911de.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 128.400, 6.455], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 2.650]
Summary of feedback from opening
/Users/drornoy/Downloads/6e2f1d2911de/00005.6e2f1d2911de.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 130.200, 12.910], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 2.650]
Chain information for 00001.6e2f1d2911de.allbb.pdb #8
---
Chain | Description
A B C D | No description available
Chain information for 00002.6e2f1d2911de.allbb.pdb #9
---
Chain | Description
A B C D | No description available
Chain information for 00003.6e2f1d2911de.allbb.pdb #10
---
Chain | Description
A B C D | No description available
Chain information for 00004.6e2f1d2911de.allbb.pdb #11
---
Chain | Description
A B C D | No description available
Chain information for 00005.6e2f1d2911de.allbb.pdb #12
---
Chain | Description
A B C D | No description available
> select #7-12
3360 atoms, 3336 bonds, 108 pseudobonds, 672 residues, 7 models selected
> hide sel atoms
> hide sel cartoons
> select #7-12@CA
672 atoms, 672 residues, 6 models selected
> show sel atoms
> style sel ball
Changed 672 atom styles
> style sel ball
Changed 672 atom styles
> align #8-12/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
RMSD between 56 atom pairs is 0.010 angstroms
[Repeated 4 time(s)]
> hide #!9 models
> hide #!10 models
> hide #!11 models
> hide #!12 models
> show #!12 models
> hide #!12 models
> show #!11 models
> show #!10 models
> show #!9 models
> hide #!8 models
> show #!8 models
> hide #!8 models
> hide #!11 models
> hide #!10 models
> close #8-12
> open /Users/drornoy/Downloads/fb5ff5833da3/00002.fb5ff5833da3.allbb.pdb
> /Users/drornoy/Downloads/fb5ff5833da3/00001.fb5ff5833da3.allbb.pdb
> /Users/drornoy/Downloads/fb5ff5833da3/00003.fb5ff5833da3.allbb.pdb
> /Users/drornoy/Downloads/fb5ff5833da3/00004.fb5ff5833da3.allbb.pdb
> /Users/drornoy/Downloads/fb5ff5833da3/00005.fb5ff5833da3.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/fb5ff5833da3/00002.fb5ff5833da3.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 126.600, -6.500], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 2.900]
Summary of feedback from opening
/Users/drornoy/Downloads/fb5ff5833da3/00001.fb5ff5833da3.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 126.600, -6.500], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 2.650]
Summary of feedback from opening
/Users/drornoy/Downloads/fb5ff5833da3/00003.fb5ff5833da3.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 126.600, -6.500], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 3.150]
Summary of feedback from opening
/Users/drornoy/Downloads/fb5ff5833da3/00004.fb5ff5833da3.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 126.600, -6.500], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 3.400]
Summary of feedback from opening
/Users/drornoy/Downloads/fb5ff5833da3/00005.fb5ff5833da3.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 126.600, -6.500], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 3.650]
Chain information for 00002.fb5ff5833da3.allbb.pdb #8
---
Chain | Description
A B C D | No description available
Chain information for 00001.fb5ff5833da3.allbb.pdb #9
---
Chain | Description
A B C D | No description available
Chain information for 00003.fb5ff5833da3.allbb.pdb #10
---
Chain | Description
A B C D | No description available
Chain information for 00004.fb5ff5833da3.allbb.pdb #11
---
Chain | Description
A B C D | No description available
Chain information for 00005.fb5ff5833da3.allbb.pdb #12
---
Chain | Description
A B C D | No description available
> align #8-12/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
RMSD between 56 atom pairs is 0.010 angstroms
[Repeated 4 time(s)]
> close #8-12
> open /Users/drornoy/Downloads/be2304659388/00002.be2304659388.allbb.pdb
> /Users/drornoy/Downloads/be2304659388/00001.be2304659388.allbb.pdb
> /Users/drornoy/Downloads/be2304659388/00003.be2304659388.allbb.pdb
> /Users/drornoy/Downloads/be2304659388/00004.be2304659388.allbb.pdb
> /Users/drornoy/Downloads/be2304659388/00005.be2304659388.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/be2304659388/00002.be2304659388.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 126.600, -6.500], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 4.500]
Summary of feedback from opening
/Users/drornoy/Downloads/be2304659388/00001.be2304659388.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 126.600, -6.500], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 4]
Summary of feedback from opening
/Users/drornoy/Downloads/be2304659388/00003.be2304659388.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 126.600, -6.500], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 5]
Summary of feedback from opening
/Users/drornoy/Downloads/be2304659388/00004.be2304659388.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 126.600, -6.500], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 5.500]
Summary of feedback from opening
/Users/drornoy/Downloads/be2304659388/00005.be2304659388.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 126.600, -6.500], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 6]
Chain information for 00002.be2304659388.allbb.pdb #8
---
Chain | Description
A B C D | No description available
Chain information for 00001.be2304659388.allbb.pdb #9
---
Chain | Description
A B C D | No description available
Chain information for 00003.be2304659388.allbb.pdb #10
---
Chain | Description
A B C D | No description available
Chain information for 00004.be2304659388.allbb.pdb #11
---
Chain | Description
A B C D | No description available
Chain information for 00005.be2304659388.allbb.pdb #12
---
Chain | Description
A B C D | No description available
> align #8-12/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
RMSD between 56 atom pairs is 0.010 angstroms
[Repeated 4 time(s)]
> select #7-12
3360 atoms, 3336 bonds, 108 pseudobonds, 672 residues, 7 models selected
> hide sel atoms
> hide sel cartoons
> select #7-12@CA
672 atoms, 672 residues, 6 models selected
> show sel atoms
> style sel ball
Changed 672 atom styles
> open /Users/drornoy/Downloads/00001.6da48813474e.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/00001.6da48813474e.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 126.600, 0], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 4]
Chain information for 00001.6da48813474e.allbb.pdb #13
---
Chain | Description
A B C D | No description available
> align #8-13/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
RMSD between 56 atom pairs is 0.010 angstroms
[Repeated 5 time(s)]
> select #7-13
3920 atoms, 3892 bonds, 648 pseudobonds, 784 residues, 13 models selected
> hide sel atoms
> hide sel cartoons
> select #7-13@CA
784 atoms, 784 residues, 7 models selected
> show sel atoms
> style sel ball
Changed 784 atom styles
> hide #!10 models
> hide #!11 models
> hide #!12 models
> hide #!8 models
> open /Users/drornoy/Downloads/00001.357aafb627c9.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/00001.357aafb627c9.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 119, 126.600, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 2.400, 4]
Chain information for 00001.357aafb627c9.allbb.pdb #14
---
Chain | Description
A B C D | No description available
> align #8-14/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
RMSD between 56 atom pairs is 0.010 angstroms
[Repeated 6 time(s)]
> select #7-14
4480 atoms, 4448 bonds, 756 pseudobonds, 896 residues, 15 models selected
> hide sel & #14#!7,9,13 atoms
> hide sel & #7,9,13-14 cartoons
> select #7-14@CA
896 atoms, 432 pseudobonds, 896 residues, 12 models selected
> show sel & #7,9,13-14 atoms
> style sel & #!7,9,13-14 ball
Changed 448 atom styles
> close #8-13
> close #14
> save "/Users/drornoy/Desktop/LH2 helices/LH2 sphaeroides 7pbw 4hB design
> with CCCP.cxs"
> hide #!3 models
> show #!1 models
> select #1/A-B/J-K@CA
2590 atoms, 2402 bonds, 36 pseudobonds, 468 residues, 4 models selected
> select #1/A-B/J-K &protein
2900 atoms, 2976 bonds, 388 residues, 2 models selected
> hide sel cartoons
> select #1/A-B@CA/J-K@CA
392 atoms, 392 residues, 2 models selected
> show sel atoms
> hide sel atoms
> select #1/A-B:11-38@CA/J-K:20-47@CA
224 atoms, 224 residues, 2 models selected
> show sel atoms
> style sel ball
Changed 224 atom styles
> select #1/A-B:31@CA/J-K:40 &backbone
20 atoms, 12 bonds, 8 residues, 2 models selected
> select #1/A-B:31/J-K:40 &backbone
32 atoms, 24 bonds, 8 residues, 2 models selected
> hide sel atoms
> select #1/A-B:31@CA/J-K:40@CA
8 atoms, 8 residues, 2 models selected
> show sel atoms
> save "/Users/drornoy/Desktop/LH2 helices/LH2 sphaeroides 7pbw 4hB design
> with CCCP.cxs"
> hide #!7 models
> show #!2 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!4 models
> hide #!4 models
> show #!5 models
> hide #!5 models
> show #!4 models
> align #4/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
RMSD between 56 atom pairs is 0.000 angstroms
> hide #!4 models
> hide #!2 models
> show #!4 models
> select #1/A
1218 atoms, 1216 bonds, 72 pseudobonds, 142 residues, 6 models selected
> ui tool show "Color Actions"
> color sel sky blue
> color sel byhetero
> select #1/B
1180 atoms, 1186 bonds, 72 pseudobonds, 134 residues, 6 models selected
> color sel light steel blue
> select #1/J
926 atoms, 924 bonds, 66 pseudobonds, 124 residues, 6 models selected
> color sel light salmon
> color sel bychain
[Repeated 1 time(s)]
> color sel byhetero
> color sel light salmon
> color sel byhetero
> select #1/K
934 atoms, 924 bonds, 66 pseudobonds, 132 residues, 6 models selected
> color sel coral
> color sel salmon
> color sel dark khaki
> color sel dark salmon
> color sel peru
> color sel light salmon
> color sel dark goldenrod
> color sel yellow green
> color sel sandy brown
> color sel byhetero
> show #!5 models
> hide #!4 models
> color #5 #73fa79ff
> color #5 #d4fb79ff
> color #5 #00f900ff
> select #5
560 atoms, 556 bonds, 108 pseudobonds, 112 residues, 2 models selected
> color sel byhetero
> show #!7 models
> hide #!7 models
> close #7
> open /Users/drornoy/Downloads/00001.7c485140197c.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/00001.7c485140197c.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [0, 118.637, 115.010, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 1.861, 2.650]
Chain information for 00001.7c485140197c.allbb.pdb #7
---
Chain | Description
A B C D | No description available
> align #7/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
RMSD between 56 atom pairs is 0.427 angstroms
> select #7
560 atoms, 556 bonds, 112 residues, 1 model selected
> hide sel cartoons
> hide sel atoms
> select #7@CA
112 atoms, 112 residues, 1 model selected
> show sel atoms
> style sel ball
Changed 112 atom styles
> hide #!1 models
> show #!1 models
> open /Users/drornoy/Downloads/00001.7785a4b6ac64.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/00001.7785a4b6ac64.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [0, 118.637, 115.010, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 1.861, 2.150]
Chain information for 00001.7785a4b6ac64.allbb.pdb #8
---
Chain | Description
A B C D | No description available
> align #8/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
RMSD between 56 atom pairs is 0.427 angstroms
> style sel ball
Changed 112 atom styles
> select #8
560 atoms, 556 bonds, 112 residues, 1 model selected
> hide sel cartoons
> hide sel atoms
> select #8@CA
112 atoms, 112 residues, 1 model selected
> show sel atoms
> hide #!7 models
> show #!7 models
> hide #!7 models
> show #!7 models
> hide #!8 models
> show #!8 models
> style sel ball
Changed 112 atom styles
> open /Users/drornoy/Downloads/00001.a6764c52a1b3.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/00001.a6764c52a1b3.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [0, 118.637, 115.010, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, 1.861, 1.650]
Chain information for 00001.a6764c52a1b3.allbb.pdb #9
---
Chain | Description
A B C D | No description available
> align #9/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
RMSD between 56 atom pairs is 0.427 angstroms
> select #9
560 atoms, 556 bonds, 112 residues, 1 model selected
> hide sel atoms
> hide sel cartoons
> select #9@CA
112 atoms, 112 residues, 1 model selected
> style sel ball
Changed 112 atom styles
> show sel atoms
> save "/Users/drornoy/Desktop/LH2 helices/LH2 sphaeroides 7pbw 4hB design
> with CCCP.cxs"
> hide #!8 models
> hide #!7 models
> hide #!5 models
> show #!3 models
> hide #!1 models
> close #7-8
> open /Users/drornoy/Downloads/00001.f9c5ce979a6d.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/00001.f9c5ce979a6d.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.490, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.115, 0.930, 1.325]
Chain information for 00001.f9c5ce979a6d.allbb.pdb #7
---
Chain | Description
A B C D | No description available
> close #9
> select #7
560 atoms, 556 bonds, 112 residues, 1 model selected
> hide sel atoms
> hide sel cartoons
> select #7@CA
112 atoms, 112 residues, 1 model selected
> show sel atoms
> style sel ball
Changed 112 atom styles
> align #7/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
RMSD between 56 atom pairs is 0.088 angstroms
> open /Users/drornoy/Downloads/00001.ec56c998cef3.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/00001.ec56c998cef3.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.490, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 0], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.115, 0.930, 1.325]
Chain information for 00001.ec56c998cef3.allbb.pdb #8
---
Chain | Description
A B C D | No description available
> select #8
560 atoms, 556 bonds, 112 residues, 1 model selected
> hide sel atoms
> hide sel cartoons
> select #8@CA
112 atoms, 112 residues, 1 model selected
> show sel atoms
> style sel ball
Changed 112 atom styles
> align #8/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
RMSD between 56 atom pairs is 0.088 angstroms
> hide #!3 models
> show #!3 models
> close #8
> open /Users/drornoy/Downloads/00001.dd4149efdbf3.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/00001.dd4149efdbf3.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.490, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 30], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.115, 0.930, 1.325]
Chain information for 00001.dd4149efdbf3.allbb.pdb #8
---
Chain | Description
A B C D | No description available
> select #8
560 atoms, 556 bonds, 112 residues, 1 model selected
> hide sel atoms
> hide sel cartoons
> select #8@CA
112 atoms, 112 residues, 1 model selected
> show sel atoms
> style sel ball
Changed 112 atom styles
> align #8/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
RMSD between 56 atom pairs is 0.088 angstroms
> close #8
> open /Users/drornoy/Downloads/00001.5ea4dc91db69.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/00001.5ea4dc91db69.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.490, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 45], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.115, 0.930, 1.325]
Chain information for 00001.5ea4dc91db69.allbb.pdb #8
---
Chain | Description
A B C D | No description available
> open /Users/drornoy/Downloads/00002.5ea4dc91db69.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/00002.5ea4dc91db69.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.490, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 60], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.115, 0.930, 1.325]
Chain information for 00002.5ea4dc91db69.allbb.pdb #9
---
Chain | Description
A B C D | No description available
> align #8-9/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
RMSD between 56 atom pairs is 0.088 angstroms
[Repeated 1 time(s)]
> select #8-9
1120 atoms, 1112 bonds, 224 residues, 2 models selected
> hide sel atoms
> hide sel cartoons
> select #8-9@CA
224 atoms, 224 residues, 2 models selected
> show sel atoms
> style sel ball
Changed 224 atom styles
> hide #!9 models
> show #!9 models
> hide #!9 models
> show #!9 models
> hide #!8 models
> open /Users/drornoy/Downloads/00001.45b97743dc78.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/00001.45b97743dc78.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.490, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 90], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.115, 0.930, 1.325]
Chain information for 00001.45b97743dc78.allbb.pdb #10
---
Chain | Description
A B C D | No description available
> hide sel & #!9 atoms
> hide sel & #9 cartoons
> select #8-10@CA
336 atoms, 108 pseudobonds, 336 residues, 4 models selected
> show sel & #9-10 atoms
> style sel & #10#!9 ball
Changed 224 atom styles
> align #8-10/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
RMSD between 56 atom pairs is 0.088 angstroms
[Repeated 2 time(s)]
> select #8-10
1680 atoms, 1668 bonds, 216 pseudobonds, 336 residues, 5 models selected
> hide sel & #10#!9 cartoons
> hide #!10 models
> show #!10 models
> hide #!10 models
> show #!10 models
> hide #!10 models
> show #!10 models
> hide #!10 models
> show #!10 models
> close #10
> rename #8 45deg
> rename #9 60deg
> show #!8 models
> hide #!8 models
> hide #!9 models
> show #!8 models
> close #8-9
> open /Users/drornoy/Downloads/56e2de5feeec/00007.56e2de5feeec.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/56e2de5feeec/00007.56e2de5feeec.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.490, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.115, 0.930, 3.500]
Chain information for 00007.56e2de5feeec.allbb.pdb #8
---
Chain | Description
A B C D | No description available
> open /Users/drornoy/Downloads/56e2de5feeec/00001.56e2de5feeec.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/56e2de5feeec/00001.56e2de5feeec.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.490, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.115, 0.930, -3.500]
Chain information for 00001.56e2de5feeec.allbb.pdb #9
---
Chain | Description
A B C D | No description available
> open /Users/drornoy/Downloads/56e2de5feeec/00002.56e2de5feeec.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/56e2de5feeec/00002.56e2de5feeec.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.490, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.115, 0.930, -2.333]
Chain information for 00002.56e2de5feeec.allbb.pdb #10
---
Chain | Description
A B C D | No description available
> open /Users/drornoy/Downloads/56e2de5feeec/00003.56e2de5feeec.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/56e2de5feeec/00003.56e2de5feeec.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.490, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.115, 0.930, -1.167]
Chain information for 00003.56e2de5feeec.allbb.pdb #11
---
Chain | Description
A B C D | No description available
> open /Users/drornoy/Downloads/56e2de5feeec/00004.56e2de5feeec.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/56e2de5feeec/00004.56e2de5feeec.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.490, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.115, 0.930, 0]
Chain information for 00004.56e2de5feeec.allbb.pdb #12
---
Chain | Description
A B C D | No description available
> open /Users/drornoy/Downloads/56e2de5feeec/00005.56e2de5feeec.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/56e2de5feeec/00005.56e2de5feeec.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.490, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.115, 0.930, 1.167]
Chain information for 00005.56e2de5feeec.allbb.pdb #13
---
Chain | Description
A B C D | No description available
> open /Users/drornoy/Downloads/56e2de5feeec/00006.56e2de5feeec.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/56e2de5feeec/00006.56e2de5feeec.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.490, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.115, 0.930, 2.333]
Chain information for 00006.56e2de5feeec.allbb.pdb #14
---
Chain | Description
A B C D | No description available
> hide #8 models
> hide #9 models
> hide #10 models
> show #9 models
> show #10 models
> show #8 models
> select #8-14
3920 atoms, 3892 bonds, 784 residues, 7 models selected
> hide sel atoms
> hide sel cartoons
> select #8-14@CA
784 atoms, 784 residues, 7 models selected
> show sel atoms
> style sel ball
Changed 784 atom styles
> align #8-14/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
RMSD between 56 atom pairs is 0.088 angstroms
[Repeated 6 time(s)]
> hide #!9 models
> hide #!10 models
> hide #!11 models
> hide #!12 models
> hide #!13 models
> hide #!14 models
> show #!9 models
> show #!14 models
> hide #!14 models
> hide #!9 models
> show #!9 models
> hide #!9 models
> show #!14 models
> show #!13 models
> hide #!13 models
> show #!13 models
> hide #!13 models
> show #!12 models
> hide #!12 models
> show #!12 models
> hide #!12 models
> hide #!14 models
> show #!12 models
> hide #!12 models
> show #!12 models
> show #!9 models
> hide #!9 models
> hide #!12 models
> close #9-14
> open /Users/drornoy/Downloads/00001.11296445a725.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/00001.11296445a725.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.490, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.115, 0.930, 4.500]
Chain information for 00001.11296445a725.allbb.pdb #9
---
Chain | Description
A B C D | No description available
> open /Users/drornoy/Downloads/00003.11296445a725.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/00003.11296445a725.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.490, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.115, 0.930, 6.500]
Chain information for 00003.11296445a725.allbb.pdb #10
---
Chain | Description
A B C D | No description available
> open /Users/drornoy/Downloads/00002.11296445a725.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/00002.11296445a725.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.490, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.115, 0.930, 5.500]
Chain information for 00002.11296445a725.allbb.pdb #11
---
Chain | Description
A B C D | No description available
> align #8-14/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
RMSD between 56 atom pairs is 0.088 angstroms
[Repeated 3 time(s)]
> select #8-14
2240 atoms, 2224 bonds, 108 pseudobonds, 448 residues, 5 models selected
> hide sel atoms
> hide sel cartoons
> select #8-14@CA
448 atoms, 448 residues, 4 models selected
> show sel atoms
> style sel ball
Changed 448 atom styles
> hide #!9 models
> hide #!11 models
> hide #!7 models
> hide #!8 models
> open /Users/drornoy/Downloads/00001.61b39032939a.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/00001.61b39032939a.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.490, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 10], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.115, 0.930, 6.500]
Chain information for 00001.61b39032939a.allbb.pdb #12
---
Chain | Description
A B C D | No description available
> select #8-14
2800 atoms, 2780 bonds, 432 pseudobonds, 560 residues, 9 models selected
> hide sel & #12#!10 atoms
> hide sel & #10,12 cartoons
> select #8-14@CA
560 atoms, 324 pseudobonds, 560 residues, 8 models selected
> style sel & #10,12 ball
Changed 224 atom styles
> show sel & #10,12 atoms
> align #8-14/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
RMSD between 56 atom pairs is 0.088 angstroms
[Repeated 4 time(s)]
> hide #!12 models
> show #!12 models
> hide #!12 models
> show #!12 models
> hide #!12 models
> show #!12 models
> hide #!12 models
> show #!12 models
> hide #!12 models
> show #!12 models
> hide #!12 models
> show #!12 models
> hide #!12 models
> show #!12 models
> hide #!12 models
> close #11-12
> open /Users/drornoy/Downloads/00001.3650e325fd8a.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/00001.3650e325fd8a.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.490, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 18], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.115, 0.930, 6.500]
Chain information for 00001.3650e325fd8a.allbb.pdb #11
---
Chain | Description
A B C D | No description available
> open /Users/drornoy/Downloads/00003.3650e325fd8a.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/00003.3650e325fd8a.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.490, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 30], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.115, 0.930, 6.500]
Chain information for 00003.3650e325fd8a.allbb.pdb #12
---
Chain | Description
A B C D | No description available
> open /Users/drornoy/Downloads/00002.3650e325fd8a.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/00002.3650e325fd8a.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.490, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 24], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.115, 0.930, 6.500]
Chain information for 00002.3650e325fd8a.allbb.pdb #13
---
Chain | Description
A B C D | No description available
> align #8-14/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
RMSD between 56 atom pairs is 0.088 angstroms
[Repeated 5 time(s)]
> hide sel & #!10 cartoons
> select #8-14 &~@CA
2688 atoms, 1992 bonds, 672 residues, 6 models selected
> hide sel & #11-13#!10 cartoons
> hide sel & #11-13#!10 atoms
> select #8-14@CA
672 atoms, 324 pseudobonds, 672 residues, 9 models selected
> style sel & #11-13#!10 ball
Changed 448 atom styles
> align #8-14/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
RMSD between 56 atom pairs is 0.088 angstroms
[Repeated 5 time(s)]
> select #8-14@CA
672 atoms, 324 pseudobonds, 672 residues, 9 models selected
> show sel & #11-13#!10 atoms
> hide #!13 models
> hide #!11 models
> hide #!10 models
> close #8-11
> close #13
> close #12
> close #7
> open "/Users/drornoy/Desktop/LH2 helices/CCCP LH2 4HB antiparallel 1.pdb"
> "/Users/drornoy/Desktop/LH2 helices/CCCP LH2 4HB antiparallel 2.pdb"
Summary of feedback from opening /Users/drornoy/Desktop/LH2 helices/CCCP LH2
4HB antiparallel 1.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.490, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.115, 0.930, 1.325]
Summary of feedback from opening /Users/drornoy/Desktop/LH2 helices/CCCP LH2
4HB antiparallel 2.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.490, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 30], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.115, 0.930, 6.500]
Chain information for CCCP LH2 4HB antiparallel 1.pdb #7
---
Chain | Description
A B C D | No description available
Chain information for CCCP LH2 4HB antiparallel 2.pdb #8
---
Chain | Description
A B C D | No description available
> select #8-14
560 atoms, 556 bonds, 112 residues, 1 model selected
> select #7-8
1120 atoms, 1112 bonds, 224 residues, 2 models selected
> hide sel atoms
> hide sel cartoons
> select #7-8@CA
224 atoms, 224 residues, 2 models selected
> show sel atoms
> style sel ball
Changed 224 atom styles
> align #7-8/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
RMSD between 56 atom pairs is 0.088 angstroms
[Repeated 1 time(s)]
> hide #!7 models
> show #!7 models
> hide #!7 models
> save "/Users/drornoy/Desktop/LH2 helices/CCCP LH2 4HB antiparallel 2.pdb"
> models #8
> close #7-8
> open "/Users/drornoy/Desktop/LH2 helices/CCCP LH2 4HB antiparallel 2.pdb"
Summary of feedback from opening /Users/drornoy/Desktop/LH2 helices/CCCP LH2
4HB antiparallel 2.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.490, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 30], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.115, 0.930, 6.500]
Chain information for CCCP LH2 4HB antiparallel 2.pdb #7
---
Chain | Description
A B C D | No description available
> select #7-8@CA
112 atoms, 112 residues, 1 model selected
> select #7-8
560 atoms, 556 bonds, 112 residues, 1 model selected
> hide sel atoms
> hide sel cartoons
> select #7-8@CA
112 atoms, 112 residues, 1 model selected
> show sel atoms
> style sel ball
Changed 112 atom styles
> show #!1 models
> hide #!3 models
> select #1/J-K:22
40 atoms, 40 bonds, 4 residues, 2 models selected
> select #1/J-K:22 &@C,N,O
12 atoms, 4 bonds, 4 residues, 2 models selected
> hide sel atoms
> hide #!1.1 models
> show #!1.1 models
> hide #!1.2 models
> show #!1.2 models
> hide #!1 models
> show #!1 models
> hide #!7 models
> show #!7 models
> show #!3 models
> hide #!3 models
> select #7/D:10/A:21
10 atoms, 8 bonds, 2 residues, 1 model selected
> ui tool show Rotamers
> swapaa interactive sel HIS rotLib Dunbrack
CCCP LH2 4HB antiparallel 2.pdb #7/A GLY 21: phi -66.4, psi -41.3 trans
Changed 288 bond radii
CCCP LH2 4HB antiparallel 2.pdb #!7/D GLY 10: phi -66.5, psi -41.3 trans
Changed 288 bond radii
> ui tool show Rotamers
> swapaa interactive sel HIS rotLib Dunbrack
CCCP LH2 4HB antiparallel 2.pdb #7/A GLY 21: phi -66.4, psi -41.3 trans
Changed 288 bond radii
CCCP LH2 4HB antiparallel 2.pdb #!7/D GLY 10: phi -66.5, psi -41.3 trans
Changed 288 bond radii
> select #7/D:11/A:21
10 atoms, 8 bonds, 2 residues, 1 model selected
> open "/Users/drornoy/Desktop/LH2 helices/CCCP LH2 4HB antiparallel 1.pdb"
Summary of feedback from opening /Users/drornoy/Desktop/LH2 helices/CCCP LH2
4HB antiparallel 1.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.490, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.115, 0.930, 1.325]
Chain information for CCCP LH2 4HB antiparallel 1.pdb #8
---
Chain | Description
A B C D | No description available
> select #8
560 atoms, 556 bonds, 112 residues, 1 model selected
> hide sel cartoons
> hide sel atoms
> select #8@CA
112 atoms, 112 residues, 1 model selected
> show sel atoms
> style sel ball
Changed 112 atom styles
> align #7-8/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
RMSD between 56 atom pairs is 0.088 angstroms
[Repeated 1 time(s)]
> select up
560 atoms, 556 bonds, 112 residues, 1 model selected
> select #8/D:7
5 atoms, 4 bonds, 1 residue, 1 model selected
> swapaa interactive sel HIS rotLib Dunbrack
CCCP LH2 4HB antiparallel 1.pdb #8/D GLY 7: phi -66.3, psi -41.4 trans
Changed 288 bond radii
> select #8/D:6
5 atoms, 4 bonds, 1 residue, 1 model selected
> swapaa interactive sel HIS rotLib Dunbrack
CCCP LH2 4HB antiparallel 1.pdb #8/D GLY 6: phi -66.5, psi -41.4 trans
Changed 288 bond radii
> open /Users/drornoy/Downloads/00001.1fceb8710533.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/00001.1fceb8710533.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.490, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 1, 1],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.172, -0.465, 4.575]
Chain information for 00001.1fceb8710533.allbb.pdb #9
---
Chain | Description
A B C D | No description available
> hide #!8 models
> hide #!7 models
> show #!3 models
> align #9/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
RMSD between 56 atom pairs is 0.078 angstroms
> hide #!3 models
> show #!3 models
> open /Users/drornoy/Downloads/00001.058ccef474a9.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/00001.058ccef474a9.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.490, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 1, 1],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, -1.861, 2.650]
Chain information for 00001.058ccef474a9.allbb.pdb #10
---
Chain | Description
A B C D | No description available
> close #9-10
> hide #!1 models
> open /Users/drornoy/Downloads/00001.058ccef474a9.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/00001.058ccef474a9.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.490, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 1, 1],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, -1.861, 2.650]
Chain information for 00001.058ccef474a9.allbb.pdb #9
---
Chain | Description
A B C D | No description available
> align #9/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
RMSD between 56 atom pairs is 0.075 angstroms
> select #9
560 atoms, 556 bonds, 112 residues, 1 model selected
> hide sel atoms
> hide sel cartoons
> select #9@CA
112 atoms, 112 residues, 1 model selected
> show sel atoms
> style sel ball
Changed 112 atom styles
> close #9
> close #8
> show #!1 models
> open /Users/drornoy/Downloads/00001.d355b43f3593.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/00001.d355b43f3593.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.490, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [0, 0, 1],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[0.229, -1.861, 2.650]
Chain information for 00001.d355b43f3593.allbb.pdb #8
---
Chain | Description
A B C D | No description available
> align #8/A@CA/D@CA toAtoms #3/A@CA/D@CA each structure
RMSD between 56 atom pairs is 0.075 angstroms
> select #8
560 atoms, 556 bonds, 112 residues, 1 model selected
> hide sel atoms
> hide sel cartoons
> select #8@CA
112 atoms, 112 residues, 1 model selected
> show sel atoms
> style sel ball
Changed 112 atom styles
> hide #!1 models
> show #!1 models
> open /Users/drornoy/Downloads/00001.ff8667eb2cd6.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/00001.ff8667eb2cd6.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.490, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [0, 0, 1],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> = [0,
0, 2.650]
Chain information for 00001.ff8667eb2cd6.allbb.pdb #9
---
Chain | Description
A B C D | No description available
> align #9/A@CA/D@CA toAtoms #3/A@CA/D@CA each structure
RMSD between 56 atom pairs is 0.075 angstroms
> select #9
560 atoms, 556 bonds, 112 residues, 1 model selected
> hide sel atoms
> hide sel cartoons
> select #9@CA
112 atoms, 112 residues, 1 model selected
> show sel atoms
> style sel ball
Changed 112 atom styles
> hide #!1 models
> select #8/C:1@CA
1 atom, 1 residue, 1 model selected
> select #9/C:1@CA
1 atom, 1 residue, 1 model selected
> select add #3/C:28@CA
2 atoms, 2 residues, 2 models selected
> ui tool show Distances
> distance #9/C:1@CA #3/C:28@CA
Distance between 00001.ff8667eb2cd6.allbb.pdb #9/C GLY 1 CA and CCCP sim LH2
parallel 4HB.pdb #3/C GLY 28 CA: 2.409Å
> hide #9.1 models
> show #9.1 models
> hide #!8 models
> select #9/B:3@CA
1 atom, 1 residue, 1 model selected
> select add #3/B:26@CA
2 atoms, 2 residues, 2 models selected
> distance #9/B:3@CA #3/B:26@CA
Distance between 00001.ff8667eb2cd6.allbb.pdb #9/B GLY 3 CA and CCCP sim LH2
parallel 4HB.pdb #3/B GLY 26 CA: 4.446Å
> distance style color gold
[Repeated 2 time(s)]
> ~distance #3/D:28@CA #4/D:1@CA
> ~distance #3/C:28@CA #4/C:1@CA
> ~distance #9/B:3@CA #3/B:26@CA
> ~distance #9/C:1@CA #3/C:28@CA
> distance #9/B:3@CA #3/B:26@CA
Distance between 00001.ff8667eb2cd6.allbb.pdb #9/B GLY 3 CA and CCCP sim LH2
parallel 4HB.pdb #3/B GLY 26 CA: 4.446Å
> select #9/C:1@CA
1 atom, 1 residue, 1 model selected
> select add #3/C:28@CA
2 atoms, 2 residues, 2 models selected
> distance #9/C:1@CA #3/C:28@CA
Distance between 00001.ff8667eb2cd6.allbb.pdb #9/C GLY 1 CA and CCCP sim LH2
parallel 4HB.pdb #3/C GLY 28 CA: 2.409Å
> open /Users/drornoy/Downloads/00001.698aef127d95.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/00001.698aef127d95.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.490, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [0, 0, 1],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[4.450, 2.410, 2.650]
Chain information for 00001.698aef127d95.allbb.pdb #10
---
Chain | Description
A B C D | No description available
> select #10
560 atoms, 556 bonds, 112 residues, 1 model selected
> hide sel atoms
> hide sel cartoons
> select #10@CA
112 atoms, 112 residues, 1 model selected
> show sel atoms
> style sel ball
Changed 112 atom styles
> align #10/A@CA/D@CA toAtoms #3/A@CA/D@CA each structure
RMSD between 56 atom pairs is 0.075 angstroms
> hide #!9 models
> save "/Users/drornoy/Desktop/LH2 helices/CCCP LH2 4HB p_ap_ap_p.pdb" models
> #10
> close #7-10
> open "/Users/drornoy/Desktop/LH2 helices/CCCP LH2 4HB p_ap_ap_p.pdb"
Summary of feedback from opening /Users/drornoy/Desktop/LH2 helices/CCCP LH2
4HB p_ap_ap_p.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.490, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [0, 0, 1],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[4.450, 2.410, 2.650]
Chain information for CCCP LH2 4HB p_ap_ap_p.pdb #7
---
Chain | Description
A B C D | No description available
> show #!1 models
> hide #!1 models
> hide #!3 models
> select #7
560 atoms, 556 bonds, 112 residues, 1 model selected
> hide sel cartoons
> select #7@CA
112 atoms, 112 residues, 1 model selected
> show sel atoms
> style sel ball
Changed 112 atom styles
> show #!1 models
> select #7/A:21/D:21
10 atoms, 8 bonds, 2 residues, 1 model selected
> ui tool show Rotamers
> swapaa interactive sel HIS rotLib Dunbrack
CCCP LH2 4HB p_ap_ap_p.pdb #7/A GLY 21: phi -66.3, psi -41.4 trans
Changed 288 bond radii
CCCP LH2 4HB p_ap_ap_p.pdb #!7/D GLY 21: phi -66.3, psi -41.4 trans
Changed 288 bond radii
> swapaa #!7/A:21 HIS criteria 4 rotLib Dunbrack
Using Dunbrack library
CCCP LH2 4HB p_ap_ap_p.pdb #!7/A GLY 21: phi -66.3, psi -41.4 trans
Applying HIS rotamer (chi angles: -70.4 82.5) to CCCP LH2 4HB p_ap_ap_p.pdb
#!7/A HIS 21
> swapaa #!7/D:21 HIS criteria 4 rotLib Dunbrack
Using Dunbrack library
CCCP LH2 4HB p_ap_ap_p.pdb #!7/D GLY 21: phi -66.3, psi -41.4 trans
Applying HIS rotamer (chi angles: -70.4 82.5) to CCCP LH2 4HB p_ap_ap_p.pdb
#!7/D HIS 21
> select #7/A:21/D:21 &~@CA
20 atoms, 16 bonds, 2 residues, 1 model selected
> style sel stick
Changed 20 atom styles
> save "/Users/drornoy/Desktop/LH2 helices/LH2 sphaeroides 7pbw 4hB design
> with CCCP.cxs"
> select #1/A-B:11-38/J-K:20-47
1604 atoms, 1628 bonds, 216 pseudobonds, 224 residues, 4 models selected
> ui tool show H-Bonds
> hbonds sel dashes 6 interModel false intraRes false reveal true
> retainCurrent true
354 hydrogen bonds found
> ui tool show H-Bonds
> select #1/A-B:11-38/J-K:20-47 &~backbone
708 atoms, 524 bonds, 4 pseudobonds, 208 residues, 4 models selected
> hbonds sel interModel false intraRes false reveal true
116 hydrogen bonds found
> hide #!7 models
> show #!7 models
> select #7/A:22
5 atoms, 4 bonds, 1 residue, 1 model selected
> select #7/A:20
5 atoms, 4 bonds, 1 residue, 1 model selected
> select #7/A:17
5 atoms, 4 bonds, 1 residue, 1 model selected
> ui tool show Rotamers
> swapaa interactive sel SER rotLib Dunbrack
CCCP LH2 4HB p_ap_ap_p.pdb #7/A GLY 17: phi -66.4, psi -41.3 trans
Changed 9 bond radii
> swapaa #!7/A:17 SER criteria 3 rotLib Dunbrack
Using Dunbrack library
CCCP LH2 4HB p_ap_ap_p.pdb #!7/A GLY 17: phi -66.4, psi -41.3 trans
Applying SER rotamer (chi angles: -179.8) to CCCP LH2 4HB p_ap_ap_p.pdb #!7/A
SER 17
> select #7/A:17 &~backbone
2 atoms, 1 bond, 1 residue, 1 model selected
> style sel stick
Changed 2 atom styles
> hide #!1 models
> show #!1 models
> hide #!1 models
> hbonds sel dashes 6 interModel false intraRes false reveal true
> retainCurrent true
0 hydrogen bonds found
> show #!1 models
> hide #!7 models
> select #1/B
1180 atoms, 1186 bonds, 40 pseudobonds, 134 residues, 6 models selected
> show #!7 models
> color sel byhetero
> hide #!7 models
> show #!7 models
> select #7/B:12
5 atoms, 4 bonds, 1 residue, 1 model selected
> ui tool show H-Bonds
> ui tool show Rotamers
> swapaa interactive sel SER rotLib Dunbrack
CCCP LH2 4HB p_ap_ap_p.pdb #7/B GLY 12: phi -66.4, psi -41.3 trans
Changed 9 bond radii
> swapaa #!7/B:12 SER criteria 1 rotLib Dunbrack
Using Dunbrack library
CCCP LH2 4HB p_ap_ap_p.pdb #!7/B GLY 12: phi -66.4, psi -41.3 trans
Applying SER rotamer (chi angles: -65.9) to CCCP LH2 4HB p_ap_ap_p.pdb #!7/B
SER 12
> select #7/B:12 &~backbone
2 atoms, 1 bond, 1 residue, 1 model selected
> style sel stick
Changed 2 atom styles
> color sel byhetero
> hide #!7 models
> select #1/A-B:11-38/J-K:20-47 &backbone
896 atoms, 888 bonds, 224 residues, 2 models selected
> select #1/A-B:11-38/J-K:20-47 &@C,N,O
672 atoms, 440 bonds, 224 residues, 2 models selected
> hide sel atoms
> select #1/B:101
132 atoms, 140 bonds, 8 pseudobonds, 2 residues, 4 models selected
> hide sel atoms
> select #1/A-B:102
264 atoms, 280 bonds, 16 pseudobonds, 4 residues, 4 models selected
> hide sel atoms
> show #!7 models
> select #1/J:101
132 atoms, 140 bonds, 8 pseudobonds, 2 residues, 4 models selected
> hide sel atoms
> save "/Users/drornoy/Desktop/LH2 helices/LH2 sphaeroides 7pbw 4hB design
> with CCCP.cxs"
> show #!2 models
> hide #!1 models
> hide #!7 models
> show #!7 models
> show #!1 models
> close #6#2-5
> save "/Users/drornoy/Desktop/LH2 helices/LH2 sphaeroides 7pbw 4hB design
> p_ap_ap_p.cxs"
> combine #7
> close #7
> rename #2 "CCCP LH2 4HB p_ap_ap_p.pdb"
> save "/Users/drornoy/Desktop/LH2 helices/LH2 sphaeroides 7pbw 4hB design
> p_ap_ap_p.cxs"
> select #1/A-B:102
264 atoms, 280 bonds, 16 pseudobonds, 4 residues, 4 models selected
> show sel atoms
> hide sel atoms
> select #1/A-B:11-38/J-K:20-47/A:101/B:102
1868 atoms, 1908 bonds, 278 pseudobonds, 228 residues, 8 models selected
> select #1 &~/A-B:11-38/J-K:20-47/A:101/B:102
17132 atoms, 17066 bonds, 280 pseudobonds, 2140 residues, 5 models selected
> hide sel atoms
> select up
17956 atoms, 17910 bonds, 280 pseudobonds, 2252 residues, 5 models selected
> select down
17132 atoms, 17066 bonds, 280 pseudobonds, 2140 residues, 5 models selected
> select #1/K:102
2 atoms, 2 residues, 2 models selected
> show sel atoms
> hide sel atoms
> select #1/K:101
132 atoms, 140 bonds, 8 pseudobonds, 2 residues, 4 models selected
> show sel atoms
> select #1 &~/A-B:11-38/J-K:20-47/A:101/K:101
17132 atoms, 17066 bonds, 282 pseudobonds, 2140 residues, 5 models selected
> select #1/A-B:11-38/J-K:20-47/A:101/K:101
1868 atoms, 1908 bonds, 276 pseudobonds, 228 residues, 8 models selected
> save "/Users/drornoy/Desktop/LH2 helices/LH2 sphaeroides 7pbw 4hB design
> p_ap_ap_p.cxs"
> show sel atoms
> style sel sphere
Changed 1868 atom styles
> color (#!1.1-2 & sel) forest green
> color sel bychain
> color sel byhetero
> select #1/A:101/K:101
264 atoms, 280 bonds, 16 pseudobonds, 4 residues, 4 models selected
> color (#!1.1-2 & sel) forest green
> color sel byhetero
> select #1/A:101
132 atoms, 140 bonds, 8 pseudobonds, 2 residues, 4 models selected
> select clear
> save "/Users/drornoy/Desktop/LH2 helices/LH2 4hB design p_ap_ap_p
> packing.cxs"
> open "/Users/drornoy/Desktop/LH2 helices/ccbuilder_parallel_pentamer.pdb"
Chain information for ccbuilder_parallel_pentamer.pdb #3
---
Chain | Description
A B C D E | No description available
> select #1/A-B:11-38/J-K:20-47/A:101/K:101
1868 atoms, 1908 bonds, 60 pseudobonds, 228 residues, 6 models selected
> hide sel atoms
> select #1/A-B:11-38/J-K:20-47 &@CA
224 atoms, 224 residues, 2 models selected
> show sel atoms
> style sel ball
Changed 224 atom styles
> select #3@CA
140 atoms, 140 residues, 1 model selected
> select #3/A@CA
28 atoms, 28 residues, 1 model selected
> align #3/A@CA #2/A@CA
Missing required "to_atoms" argument
> align #3/A@CA toAtoms #2/A@CA
RMSD between 28 atom pairs is 1.361 angstroms
> select up
173 atoms, 172 bonds, 28 residues, 1 model selected
> select down
28 atoms, 28 residues, 1 model selected
> select #3
865 atoms, 860 bonds, 140 residues, 1 model selected
> hide sel atoms
> select #3@CA
140 atoms, 140 residues, 1 model selected
> show sel atoms
> style sel ball
Changed 140 atom styles
> select #3:1@CA
5 atoms, 5 residues, 1 model selected
> show sel atoms
> select #3:1
55 atoms, 50 bonds, 5 residues, 1 model selected
> select #3:1 &~@C,N,O
40 atoms, 20 bonds, 5 residues, 1 model selected
> show sel atoms
> style sel stick
Changed 40 atom styles
> color sel byhetero
> select #3:1 &H
15 atoms, 5 residues, 1 model selected
> hide sel atoms
> hide #!1 models
> show #!1 models
> select #1/A:101/K:101
264 atoms, 280 bonds, 16 pseudobonds, 4 residues, 4 models selected
> show sel atoms
> style sel stick
Changed 264 atom styles
> hide sel atoms
> select #1/A:31/D:101
152 atoms, 160 bonds, 8 pseudobonds, 4 residues, 4 models selected
> select #1/A:31/D:101 &~backbone
144 atoms, 152 bonds, 8 pseudobonds, 4 residues, 4 models selected
> show sel atoms
> style sel stick
Changed 144 atom styles
> select #1/A:31/D:101 &@CA
2 atoms, 2 residues, 2 models selected
> hide #!1 models
> hide #!3 models
> show #!3 models
> align #3/B@CA toAtoms #2/A@CA
RMSD between 28 atom pairs is 1.359 angstroms
> align #3/A@CA toAtoms #2/A@CA
RMSD between 28 atom pairs is 1.361 angstroms
> select #1/A:11-38/K:20-47 &@CA
112 atoms, 108 pseudobonds, 112 residues, 4 models selected
> show #!1 models
> hide #!2 models
> hide #!1 models
> show #!1 models
> help help:user
> align #3/B@CA/E@CA toAtoms #1/A:11-38/K:20-47 matchAtomNames true
Pairing dropped 0 atoms and 746 reference atoms
RMSD between 56 atom pairs is 3.686 angstroms
> align #3/B@CA toAtoms #1/A:11-38 matchAtomNames true
Pairing dropped 0 atoms and 362 reference atoms
RMSD between 28 atom pairs is 1.699 angstroms
> align #3/B@CA/E@CA toAtoms #1/A:11-38/K:20-47 matchAtomNames true
Pairing dropped 0 atoms and 746 reference atoms
RMSD between 56 atom pairs is 3.686 angstroms
> show #!2 models
> hide #!1 models
> align #3/B@CA/E@CA toAtoms #2/B/D matchAtomNames true
Pairing dropped 0 atoms and 232 reference atoms
RMSD between 56 atom pairs is 16.834 angstroms
> align #3/B@CA/E@CA toAtoms #2/B@CA/D@CA
RMSD between 56 atom pairs is 16.834 angstroms
> align #3/B@CA/E@CA toAtoms #1/A:11-38/K:20-47 matchAtomNames true
Pairing dropped 0 atoms and 746 reference atoms
RMSD between 56 atom pairs is 3.686 angstroms
> open /Users/drornoy/Downloads/ccbuilder_model(3).pdb
Chain information for ccbuilder_model(3).pdb #4
---
Chain | Description
A B C D E | No description available
> align #4/B@CA/E@CA toAtoms #1/A:11-38/K:20-47 matchAtomNames true
Pairing dropped 0 atoms and 746 reference atoms
RMSD between 56 atom pairs is 4.352 angstroms
> hide #!3 models
> select #3
865 atoms, 860 bonds, 135 pseudobonds, 140 residues, 2 models selected
> hide #4#!2 atoms
> select #3@CA
140 atoms, 135 pseudobonds, 140 residues, 2 models selected
> show #4#!2 atoms
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> hide #4 models
> hide #!2 models
> show #4 models
> select #4
865 atoms, 860 bonds, 140 residues, 1 model selected
> hide sel atoms
> select #4@CA
140 atoms, 140 residues, 1 model selected
> show sel atoms
> style sel ball
Changed 140 atom styles
> show #!1 models
> show #!2 models
> hide #!4 models
> hide #!2 models
> show #!4 models
> close #4
> select #1/A:11/K:20&@CA
4 atoms, 4 residues, 2 models selected
> select #1/A-B:11/J-K:20&@CA
8 atoms, 8 residues, 2 models selected
> color sel magenta
> show #!3 models
> hide #!3 models
> show #!3 models
> select #1K:HIS
Expected an objects specifier or a keyword
> select #1/K:HIS
40 atoms, 40 bonds, 4 residues, 2 models selected
> select #1/K:HIS &~backbone
24 atoms, 24 bonds, 4 residues, 2 models selected
> show sel atoms
> style sel stick
Changed 24 atom styles
> select #1/K:22 &~backbone
12 atoms, 12 bonds, 2 residues, 2 models selected
> hide sel atoms
> open /Users/drornoy/Downloads/ccbuilder_model(4).pdb
Chain information for ccbuilder_model(4).pdb #4
---
Chain | Description
A B C D E | No description available
> select #4
850 atoms, 845 bonds, 140 residues, 1 model selected
> hide sel atoms
> select #4@CA
140 atoms, 140 residues, 1 model selected
> show sel atoms
> style sel ball
Changed 140 atom styles
> align #4/B@CA/E@CA toAtoms #1/A:11-38/K:20-47 matchAtomNames true
Pairing dropped 0 atoms and 746 reference atoms
RMSD between 56 atom pairs is 2.656 angstroms
> hide #!3 models
> close #4
> close #3
> open /Users/drornoy/Downloads/ccbuilder_gfgff.pdb
Chain information for ccbuilder_gfgff.pdb #3
---
Chain | Description
A B C D E | No description available
> align #4/B@CA/E@CA toAtoms #1/A:11-38/K:20-47 matchAtomNames true
Pairing dropped 0 atoms and 802 reference atoms
No atoms paired for alignment
> align #3/B@CA/E@CA toAtoms #1/A:11-38/K:20-47 matchAtomNames true
Pairing dropped 0 atoms and 746 reference atoms
RMSD between 56 atom pairs is 2.656 angstroms
> select #3
850 atoms, 845 bonds, 140 residues, 1 model selected
> hide sel atoms
> style sel stick
Changed 850 atom styles
> select #3@CA
140 atoms, 140 residues, 1 model selected
> show sel atoms
> style sel ball
Changed 140 atom styles
> show #!2 models
> select #2 &~baqckbone
Expected a keyword
> select #2 &~backbone
16 atoms, 14 bonds, 4 residues, 1 model selected
> select #2 &~backbone &~:HIS
4 atoms, 4 bonds, 2 residues, 1 model selected
> select #2 &backbone
560 atoms, 556 bonds, 112 residues, 1 model selected
> select #2 &backbone &~@CA
448 atoms, 332 bonds, 112 residues, 1 model selected
> hide sel atoms
> open /Users/drornoy/Downloads/ccbuilder_gggff.pdb
Chain information for ccbuilder_gggff.pdb #4
---
Chain | Description
A B C D E | No description available
> select #4
850 atoms, 845 bonds, 140 residues, 1 model selected
> style sel stick
Changed 850 atom styles
> hide sel atoms
> select #4@CA
140 atoms, 140 residues, 1 model selected
> show sel atoms
> style sel ball
Changed 140 atom styles
> align #4/B@CA/E@CA toAtoms #1/A:11-38/K:20-47 matchAtomNames true
Pairing dropped 0 atoms and 746 reference atoms
RMSD between 56 atom pairs is 3.689 angstroms
> align #4/B@CA toAtoms #1/A:11-38 matchAtomNames true
Pairing dropped 0 atoms and 362 reference atoms
RMSD between 28 atom pairs is 1.698 angstroms
> align #4/A@CA toAtoms #1/B:11-38 matchAtomNames true
Pairing dropped 0 atoms and 362 reference atoms
RMSD between 28 atom pairs is 1.710 angstroms
> hide #!3 models
> align #4/A:8-28@CA toAtoms #1/B:18-38 matchAtomNames true
Pairing dropped 0 atoms and 273 reference atoms
RMSD between 21 atom pairs is 1.137 angstroms
> align #4/B@CA/E@CA toAtoms #1/A:11-38/K:20-47 matchAtomNames true
Pairing dropped 0 atoms and 746 reference atoms
RMSD between 56 atom pairs is 3.689 angstroms
> align #4/B@CA toAtoms #1/A:11-38 matchAtomNames true
Pairing dropped 0 atoms and 362 reference atoms
RMSD between 28 atom pairs is 1.698 angstroms
> align #4/A@CA toAtoms #1/B:11-38 matchAtomNames true
Pairing dropped 0 atoms and 362 reference atoms
RMSD between 28 atom pairs is 1.710 angstroms
> align #4/A@CA/E@CA toAtoms #1/B:11-38/K:20-47 matchAtomNames true
Pairing dropped 0 atoms and 746 reference atoms
RMSD between 56 atom pairs is 2.730 angstroms
> align #4/C@CA/E@CA toAtoms #1/J-K:20-47 matchAtomNames true
Pairing dropped 0 atoms and 768 reference atoms
RMSD between 56 atom pairs is 2.657 angstroms
> hide #!2 models
> show #!2 models
> hide #!1 models
> align #4/E@CA toAtoms #2/D matchAtomNames true
Pairing dropped 0 atoms and 118 reference atoms
RMSD between 28 atom pairs is 1.361 angstroms
> close #3-4
> open /Users/drornoy/Downloads/00001.92fe2b4c8c5f.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/00001.92fe2b4c8c5f.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.490, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [0, 1, 1],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[4.450, -1.860, 2.650]
Chain information for 00001.92fe2b4c8c5f.allbb.pdb #3
---
Chain | Description
A B C D | No description available
> align #3/A@CA/C-D@CA toAtoms #2/A@CA/C-D@CA each structure
RMSD between 84 atom pairs is 14.016 angstroms
> select #3
560 atoms, 556 bonds, 112 residues, 1 model selected
> hide sel cartoons
> hide sel atoms
> select #3@CA
112 atoms, 112 residues, 1 model selected
> show sel atoms
> style sel ball
Changed 112 atom styles
> hide #!2 models
> show #!1 models
> hide #!3 models
> show #!3 models
> rename #3 "CCCP LH2 4HB p_ap_p_p.pdb"
> save "/Users/drornoy/Desktop/LH2 helices/CCCP LH2 4HB p_ap_p_p.pdb" models
> #3
> close #3
> open "/Users/drornoy/Desktop/LH2 helices/CCCP LH2 4HB p_ap_p_p.pdb"
Summary of feedback from opening /Users/drornoy/Desktop/LH2 helices/CCCP LH2
4HB p_ap_p_p.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.490, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [0, 1, 1],
Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
[4.450, -1.860, 2.650]
Chain information for CCCP LH2 4HB p_ap_p_p.pdb #3
---
Chain | Description
A B C D | No description available
> select #3
560 atoms, 556 bonds, 112 residues, 1 model selected
> hide sel atoms
> hide sel cartoons
> select #3@CA
112 atoms, 112 residues, 1 model selected
> show sel atoms
> style sel ball
Changed 112 atom styles
> hide #!1 models
> hide #!3 models
> show #!3 models
> show #!2 models
> select #3/A:21/D:21
10 atoms, 8 bonds, 2 residues, 1 model selected
> ui tool show Rotamers
> swapaa interactive sel HIS rotLib Dunbrack
CCCP LH2 4HB p_ap_p_p.pdb #3/A GLY 21: phi -66.3, psi -41.4 trans
Changed 288 bond radii
CCCP LH2 4HB p_ap_p_p.pdb #!3/D GLY 21: phi -66.3, psi -41.4 trans
Changed 288 bond radii
> swapaa #!3/A:21 HIS criteria 4 rotLib Dunbrack
Using Dunbrack library
CCCP LH2 4HB p_ap_p_p.pdb #!3/A GLY 21: phi -66.3, psi -41.4 trans
Applying HIS rotamer (chi angles: -70.4 82.5) to CCCP LH2 4HB p_ap_p_p.pdb
#!3/A HIS 21
> swapaa #!3/D:21 HIS criteria 4 rotLib Dunbrack
Using Dunbrack library
CCCP LH2 4HB p_ap_p_p.pdb #!3/D GLY 21: phi -66.3, psi -41.4 trans
Applying HIS rotamer (chi angles: -70.4 82.5) to CCCP LH2 4HB p_ap_p_p.pdb
#!3/D HIS 21
> hide #!2 models
> show #!1 models
> show #!2 models
> hide #!2 models
> hide #!3 models
> select #3/A-B:27
10 atoms, 8 bonds, 2 residues, 1 model selected
> show #!3 models
> select #1/A-B:27
24 atoms, 20 bonds, 4 residues, 2 models selected
> select #3/A:17/B:12
10 atoms, 8 bonds, 2 residues, 1 model selected
> hide #!1 models
> show #!2 models
> swapaa interactive sel SER rotLib Dunbrack
CCCP LH2 4HB p_ap_p_p.pdb #3/A GLY 17: phi -66.4, psi -41.3 trans
Changed 9 bond radii
CCCP LH2 4HB p_ap_p_p.pdb #!3/B GLY 12: phi -66.5, psi -41.3 trans
Changed 9 bond radii
> swapaa #!3/A:17 SER criteria 3 rotLib Dunbrack
Using Dunbrack library
CCCP LH2 4HB p_ap_p_p.pdb #!3/A GLY 17: phi -66.4, psi -41.3 trans
Applying SER rotamer (chi angles: -179.8) to CCCP LH2 4HB p_ap_p_p.pdb #!3/A
SER 17
> swapaa #!3/B:12 SER criteria 1 rotLib Dunbrack
Using Dunbrack library
CCCP LH2 4HB p_ap_p_p.pdb #!3/B GLY 12: phi -66.5, psi -41.3 trans
Applying SER rotamer (chi angles: -65.9) to CCCP LH2 4HB p_ap_p_p.pdb #!3/B
SER 12
> select #3 &~@CA
464 atoms, 346 bonds, 112 residues, 1 model selected
> style sel stick
Changed 464 atom styles
> select clear
> show #!1 models
> hide #!2 models
> view
> select #1/D
1214 atoms, 1216 bonds, 18 pseudobonds, 138 residues, 4 models selected
> hide sel atoms
> select #2-3:1@CA
8 atoms, 8 residues, 2 models selected
> show #!2 models
> color sel magenta
> select clear
> select #1/A:101/K:101
264 atoms, 280 bonds, 16 pseudobonds, 4 residues, 4 models selected
> show sel atoms
> hide #!2 models
> save "/Users/drornoy/Desktop/LH2 helices/LH2 4hB design p_ap_p_p.cxs"
> hide #!1 models
> color #!3 bychain
> open /Users/drornoy/Downloads/00001.3eeab1dc8ba6.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/00001.3eeab1dc8ba6.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [5], L = [28], R<SUB>0</SUB> = 8.600, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.640, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190, -9], ori = [0, 1, 1,
0], Δφ<SUB>0</SUB> = [67.587, 32.977, 178.720, 199.500],
Z<SUB>aa'</SUB> = [4.450, -1.860, 2.650, 0]
Chain information for 00001.3eeab1dc8ba6.allbb.pdb #4
---
Chain | Description
A B C D E | No description available
> align #4/A@CA/C-D@CA toAtoms #2/A@CA/C-D@CA each structure
RMSD between 84 atom pairs is 16.059 angstroms
> align #4/A@CA toAtoms #3/A@CA each structure
RMSD between 28 atom pairs is 0.148 angstroms
> close #4
> open /Users/drornoy/Downloads/00001.3eeab1dc8ba6.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/00001.3eeab1dc8ba6.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [5], L = [28], R<SUB>0</SUB> = 8.600, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.640, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190, -9], ori = [0, 1, 1,
0], Δφ<SUB>0</SUB> = [67.587, 32.977, 178.720, 199.500],
Z<SUB>aa'</SUB> = [4.450, -1.860, 2.650, 0]
Chain information for 00001.3eeab1dc8ba6.allbb.pdb #4
---
Chain | Description
A B C D E | No description available
> align #4/A@CA toAtoms #3/A@CA each structure
RMSD between 28 atom pairs is 0.148 angstroms
> close #4
> open /Users/drornoy/Downloads/00001.ccce58be689e.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/00001.ccce58be689e.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.490, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [0, 1, 1],
Δφ<SUB>0</SUB> = [63.173, 252, 141.440], Z<SUB>aa'</SUB> = [4.450,
-1.860, 2.650]
Chain information for 00001.ccce58be689e.allbb.pdb #4
---
Chain | Description
A B C D | No description available
> align #4/A@CA toAtoms #3/A@CA each structure
RMSD between 28 atom pairs is 0.000 angstroms
> close #4
> open /Users/drornoy/Downloads/00001.f8a7059e5a79.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/00001.f8a7059e5a79.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.490, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [0, 1, 1],
Δφ<SUB>0</SUB> = [63.173, 258.040, 141.440], Z<SUB>aa'</SUB> =
[4.450, -1.860, 2.650]
Chain information for 00001.f8a7059e5a79.allbb.pdb #4
---
Chain | Description
A B C D | No description available
> align #4/A@CA toAtoms #3/A@CA each structure
RMSD between 28 atom pairs is 0.000 angstroms
> open /Users/drornoy/Downloads/00001.070ba0498f7b.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/00001.070ba0498f7b.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.490, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [0, 1, 1],
Δφ<SUB>0</SUB> = [63.173, -141, 141.440], Z<SUB>aa'</SUB> = [4.450,
-1.860, 2.650]
Chain information for 00001.070ba0498f7b.allbb.pdb #5
---
Chain | Description
A B C D | No description available
> align #5/A@CA toAtoms #3/A@CA each structure
RMSD between 28 atom pairs is 0.000 angstroms
> close #4-5
> open /Users/drornoy/Downloads/00001.1f40c7c7f82b.allbb.pdb
Summary of feedback from opening
/Users/drornoy/Downloads/00001.1f40c7c7f82b.allbb.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [5], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190, -9], ori = [0, 1, 1,
0], Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440, -141],
Z<SUB>aa'</SUB> = [4.450, -1.860, 2.650, 0]
Chain information for 00001.1f40c7c7f82b.allbb.pdb #4
---
Chain | Description
A B C D E | No description available
> align #4/A@CA toAtoms #3/A@CA each structure
RMSD between 28 atom pairs is 0.074 angstroms
> select up
2152 atoms, 2140 bonds, 16 pseudobonds, 274 residues, 4 models selected
> select up
19000 atoms, 18990 bonds, 306 pseudobonds, 2368 residues, 4 models selected
> select #4 &~@CA
560 atoms, 415 bonds, 140 residues, 1 model selected
> hide sel atoms
> select #4
700 atoms, 695 bonds, 135 pseudobonds, 140 residues, 2 models selected
> style sel stick
Changed 700 atom styles
> select #4@CA
140 atoms, 135 pseudobonds, 140 residues, 2 models selected
> style sel ball
Changed 140 atom styles
> hide #!3 models
> show #!1 models
> hide #!1 models
> show #!3 models
> ui tool show "Side View"
> select clear
> select #3/D:4@CA
1 atom, 1 residue, 1 model selected
> select add #4/E:22@CA
2 atoms, 2 residues, 2 models selected
> select #4/D:4@CA/E:22@CA/C:7@CA
3 atoms, 3 residues, 1 model selected
> ui tool show Axes/Planes/Centroids
> define plane sel
Plane 'plane' placed at [ -5.76433333 3.614 -15.43966667] with normal
[-0.10035948 0.0033457 0.99494562] and radius 13.0
> select #4/D:4@CA/E:22@CA
2 atoms, 2 residues, 1 model selected
> distance #4/D:4@CA #4/E:22@CA
Distance between 00001.1f40c7c7f82b.allbb.pdb #4/D GLY 4 CA and /E GLY 22 CA:
11.481Å
> select #4/C:7@CA/E:22@CA
2 atoms, 2 residues, 1 model selected
> distance #4/C:7@CA #4/E:22@CA
Distance between 00001.1f40c7c7f82b.allbb.pdb #4/C GLY 7 CA and /E GLY 22 CA:
15.117Å
> close #4.2
> ~distance #4/C:7@CA #4/E:22@CA
> ~distance #4/D:4@CA #4/E:22@CA
> rename #4 "CCCP LH2 5HB p_ap_p_p_ap.pdb"
> save "/Users/drornoy/Desktop/LH2 helices/CCCP LH2 5HB p_ap_p_p_ap.pdb"
> models #4
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> combine #4
> select #5/A-D
560 atoms, 556 bonds, 108 pseudobonds, 112 residues, 2 models selected
> delete atoms (#!5 & sel)
> delete bonds (#!5 & sel)
> combine #3#5
> hide #!5 models
> hide #!4 models
> hide #!3 models
> close #4-5
> rename #6 "CCCP LH2 5HB p_ap_p_p_ap.pdb"
> combine #6 modelId #4
> close #6
> rename #4 "CCCP LH2 5HB p_ap_p_p_ap.pdb"
> save "/Users/drornoy/Desktop/LH2 helices/CCCP LH2 5HB p_ap_p_p_ap.pdb"
> models #4
> close #4
> open "/Users/drornoy/Desktop/LH2 helices/CCCP LH2 5HB p_ap_p_p_ap.pdb"
Summary of feedback from opening /Users/drornoy/Desktop/LH2 helices/CCCP LH2
5HB p_ap_p_p_ap.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK N = [5], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
ω<SUB>0</SUB> = 0.487, ω<SUB>1</SUB> = 97.581, α = 3.742,
φ<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190, -9], ori = [0, 1, 1,
0], Δφ<SUB>0</SUB> = [63.173, -78.045, 141.440, -141],
Z<SUB>aa'</SUB> = [4.450, -1.860, 2.650, 0]
Chain information for CCCP LH2 5HB p_ap_p_p_ap.pdb #4
---
Chain | Description
A | No description available
B | No description available
C E | No description available
D | No description available
> show #!3 models
> hide #!3 models
> select #4
716 atoms, 713 bonds, 140 residues, 1 model selected
> hide sel atoms
> show sel atoms
> style sel stick
Changed 716 atom styles
> hide sel atoms
> select #4@CA
140 atoms, 140 residues, 1 model selected
> style sel stick
Changed 140 atom styles
> style sel ball
Changed 140 atom styles
> show sel atoms
> color sel bychain
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> select #4:
Expected an objects specifier or a keyword
> select #4:HIS,SER
36 atoms, 34 bonds, 4 residues, 1 model selected
> select #4:HIS,SER &~backbone
16 atoms, 14 bonds, 4 residues, 1 model selected
> show sel atoms
> select clear
> show #!1 models
> save "/Users/drornoy/Desktop/LH2 helices/LH2 5hB design p_ap_p_p_ap.cxs"
> select #1/A-B:11-38/J-K:20-47/A:101/K:101
1868 atoms, 1908 bonds, 276 pseudobonds, 228 residues, 8 models selected
> color sel byhetero
> style sel sphere
Changed 1868 atom styles
> show sel atoms
> color sel byhetero
> select #1/A:101/K:101 &@C[1][0123456789],C[0123456789],C20
80 atoms, 76 bonds, 4 residues, 2 models selected
> hide sel atoms
> select #4/E
140 atoms, 139 bonds, 27 pseudobonds, 28 residues, 2 models selected
> show sel atoms
> style sel sphere
Changed 140 atom styles
> select #1/A-B:11-38/J-K:20-47/A:101/K:101 &backbone &~CA
Expected a keyword
> select #1/A-B:11-38/J-K:20-47/A:101/K:101 &backbone &~@CA
672 atoms, 440 bonds, 224 residues, 2 models selected
> color sel light gray
> select #1
19000 atoms, 18990 bonds, 422 pseudobonds, 2368 residues, 7 models selected
> color sel byhetero
> select #4
716 atoms, 713 bonds, 108 pseudobonds, 140 residues, 2 models selected
> color sel byhetero
> hide #!1 models
> show #!1 models
> save "/Users/drornoy/Desktop/LH2 helices/LH2 5hB design p_ap_p_p_ap
> packing.cxs"
> select #1/A:101/K:101 &~@C[1][0123456789],C[0123456789],C20
184 atoms, 200 bonds, 16 pseudobonds, 4 residues, 4 models selected
> ui tool show Contacts
> contacts sel restrict #1/A-B/:11-38/J-K:20-47 resSeparation 5
> ignoreHiddenModels true select true makePseudobonds false reveal true log
> true
Invalid "restrict" argument: Expected one of 'any', 'both', or 'cross' or an
atoms specifier
> contacts sel restrict #1/A-B/11-38/J-K:20-47 resSeparation 5
> ignoreHiddenModels true select true makePseudobonds false reveal true log
> true
Allowed overlap: -0.4
H-bond overlap reduction: 0.4
Ignore contacts between atoms separated by 4 bonds or less
Ignore contacts between atoms in residues less than 5 apart in sequence
Detect intra-residue contacts: False
Detect intra-molecule contacts: True
304 contacts
atom1 atom2 overlap distance
LH2_Sphaeroides.pdb #1.2/K BCL 101 CMD LH2_Sphaeroides.pdb #1.2/B HIS 31 CE1 0.497 3.143
LH2_Sphaeroides.pdb #1.1/K BCL 101 CMD LH2_Sphaeroides.pdb #1.1/B HIS 31 CE1 0.497 3.143
LH2_Sphaeroides.pdb #1.2/K BCL 101 ND LH2_Sphaeroides.pdb #1.2/K HIS 40 NE2 0.350 2.930
LH2_Sphaeroides.pdb #1.1/K BCL 101 ND LH2_Sphaeroides.pdb #1.1/K HIS 40 NE2 0.350 2.930
LH2_Sphaeroides.pdb #1.2/K BCL 101 ND LH2_Sphaeroides.pdb #1.2/K HIS 40 CE1 0.329 3.071
LH2_Sphaeroides.pdb #1.1/K BCL 101 ND LH2_Sphaeroides.pdb #1.1/K HIS 40 CE1 0.329 3.071
LH2_Sphaeroides.pdb #1.2/A BCL 101 MG LH2_Sphaeroides.pdb #1.2/A HIS 31 NE2 0.309 1.901
LH2_Sphaeroides.pdb #1.1/A BCL 101 MG LH2_Sphaeroides.pdb #1.1/A HIS 31 NE2 0.309 1.901
LH2_Sphaeroides.pdb #1.2/K BCL 101 MG LH2_Sphaeroides.pdb #1.2/K HIS 40 NE2 0.309 1.901
LH2_Sphaeroides.pdb #1.1/K BCL 101 MG LH2_Sphaeroides.pdb #1.1/K HIS 40 NE2 0.309 1.901
LH2_Sphaeroides.pdb #1.2/A BCL 101 NA LH2_Sphaeroides.pdb #1.2/A HIS 31 NE2 0.244 3.036
LH2_Sphaeroides.pdb #1.1/A BCL 101 NA LH2_Sphaeroides.pdb #1.1/A HIS 31 NE2 0.244 3.036
LH2_Sphaeroides.pdb #1.2/K BCL 101 CMD LH2_Sphaeroides.pdb #1.2/B HIS 31 NE2 0.206 3.314
LH2_Sphaeroides.pdb #1.1/K BCL 101 CMD LH2_Sphaeroides.pdb #1.1/B HIS 31 NE2 0.206 3.314
LH2_Sphaeroides.pdb #1.2/A BCL 101 ND LH2_Sphaeroides.pdb #1.2/A HIS 31 NE2 0.163 3.117
LH2_Sphaeroides.pdb #1.1/A BCL 101 ND LH2_Sphaeroides.pdb #1.1/A HIS 31 NE2 0.163 3.117
LH2_Sphaeroides.pdb #1.2/A BCL 101 CMB LH2_Sphaeroides.pdb #1.2/K BCL 101 CHB 0.150 3.490
LH2_Sphaeroides.pdb #1.1/A BCL 101 CMB LH2_Sphaeroides.pdb #1.1/K BCL 101 CHB 0.150 3.490
LH2_Sphaeroides.pdb #1.2/K BCL 101 NA LH2_Sphaeroides.pdb #1.2/K HIS 40 NE2 0.133 3.147
LH2_Sphaeroides.pdb #1.1/K BCL 101 NA LH2_Sphaeroides.pdb #1.1/K HIS 40 NE2 0.133 3.147
LH2_Sphaeroides.pdb #1.2/K BCL 101 CED LH2_Sphaeroides.pdb #1.2/B ALA 23 O 0.124 3.176
LH2_Sphaeroides.pdb #1.1/K BCL 101 CED LH2_Sphaeroides.pdb #1.1/B ALA 23 O 0.124 3.176
LH2_Sphaeroides.pdb #1.2/A BCL 101 NA LH2_Sphaeroides.pdb #1.2/A HIS 31 CE1 0.121 3.279
LH2_Sphaeroides.pdb #1.1/A BCL 101 NA LH2_Sphaeroides.pdb #1.1/A HIS 31 CE1 0.121 3.279
LH2_Sphaeroides.pdb #1.2/A BCL 101 C3D LH2_Sphaeroides.pdb #1.2/J ALA 39 CB 0.102 3.388
LH2_Sphaeroides.pdb #1.1/A BCL 101 C3D LH2_Sphaeroides.pdb #1.1/J ALA 39 CB 0.102 3.388
LH2_Sphaeroides.pdb #1.2/A BCL 101 CED LH2_Sphaeroides.pdb #1.2/J MET 35 CG 0.098 3.662
LH2_Sphaeroides.pdb #1.1/A BCL 101 CED LH2_Sphaeroides.pdb #1.1/J MET 35 CG 0.098 3.662
LH2_Sphaeroides.pdb #1.2/K BCL 101 CHD LH2_Sphaeroides.pdb #1.2/B BCL 101 CMD 0.094 3.546
LH2_Sphaeroides.pdb #1.1/K BCL 101 CHD LH2_Sphaeroides.pdb #1.1/B BCL 101 CMD 0.094 3.546
LH2_Sphaeroides.pdb #1.2/K BCL 101 CMC LH2_Sphaeroides.pdb #1.2/A TYR 45 CE1 0.093 3.547
LH2_Sphaeroides.pdb #1.1/K BCL 101 CMC LH2_Sphaeroides.pdb #1.1/A TYR 45 CE1 0.093 3.547
LH2_Sphaeroides.pdb #1.2/K BCL 101 CMD LH2_Sphaeroides.pdb #1.2/B HIS 31 ND1 0.089 3.431
LH2_Sphaeroides.pdb #1.1/K BCL 101 CMD LH2_Sphaeroides.pdb #1.1/B HIS 31 ND1 0.089 3.431
LH2_Sphaeroides.pdb #1.2/K BCL 101 CMD LH2_Sphaeroides.pdb #1.2/B BCL 101 C1D 0.082 3.408
LH2_Sphaeroides.pdb #1.1/K BCL 101 CMD LH2_Sphaeroides.pdb #1.1/B BCL 101 C1D 0.082 3.408
LH2_Sphaeroides.pdb #1.2/K BCL 101 CMC LH2_Sphaeroides.pdb #1.2/A TYR 45 CD1 0.071 3.569
LH2_Sphaeroides.pdb #1.1/K BCL 101 CMC LH2_Sphaeroides.pdb #1.1/A TYR 45 CD1 0.071 3.569
LH2_Sphaeroides.pdb #1.2/A BCL 101 CMC LH2_Sphaeroides.pdb #1.2/A LEU 41 CD1 0.056 3.704
LH2_Sphaeroides.pdb #1.1/A BCL 101 CMC LH2_Sphaeroides.pdb #1.1/A LEU 41 CD1 0.056 3.704
LH2_Sphaeroides.pdb #1.2/K BCL 101 C1D LH2_Sphaeroides.pdb #1.2/B ILE 30 CG2 0.055 3.435
LH2_Sphaeroides.pdb #1.1/K BCL 101 C1D LH2_Sphaeroides.pdb #1.1/B ILE 30 CG2 0.055 3.435
LH2_Sphaeroides.pdb #1.2/K BCL 101 O1D LH2_Sphaeroides.pdb #1.2/B ILE 30 CD1 0.049 3.251
LH2_Sphaeroides.pdb #1.1/K BCL 101 O1D LH2_Sphaeroides.pdb #1.1/B ILE 30 CD1 0.049 3.251
LH2_Sphaeroides.pdb #1.2/K BCL 101 NA LH2_Sphaeroides.pdb #1.2/K HIS 40 CE1 0.044 3.356
LH2_Sphaeroides.pdb #1.1/K BCL 101 NA LH2_Sphaeroides.pdb #1.1/K HIS 40 CE1 0.044 3.356
LH2_Sphaeroides.pdb #1.2/K BCL 101 CED LH2_Sphaeroides.pdb #1.2/K PHE 32 CZ 0.042 3.598
LH2_Sphaeroides.pdb #1.1/K BCL 101 CED LH2_Sphaeroides.pdb #1.1/K PHE 32 CZ 0.042 3.598
LH2_Sphaeroides.pdb #1.2/A BCL 101 NC LH2_Sphaeroides.pdb #1.2/A HIS 31 CD2 0.039 3.361
LH2_Sphaeroides.pdb #1.1/A BCL 101 NC LH2_Sphaeroides.pdb #1.1/A HIS 31 CD2 0.039 3.361
LH2_Sphaeroides.pdb #1.2/K BCL 101 CMD LH2_Sphaeroides.pdb #1.2/B BCL 101 ND 0.037 3.483
LH2_Sphaeroides.pdb #1.1/K BCL 101 CMD LH2_Sphaeroides.pdb #1.1/B BCL 101 ND 0.037 3.483
LH2_Sphaeroides.pdb #1.2/A BCL 101 CMB LH2_Sphaeroides.pdb #1.2/K BCL 101 C4A 0.021 3.469
LH2_Sphaeroides.pdb #1.1/A BCL 101 CMB LH2_Sphaeroides.pdb #1.1/K BCL 101 C4A 0.021 3.469
LH2_Sphaeroides.pdb #1.2/A BCL 101 CAA LH2_Sphaeroides.pdb #1.2/A SER 27 OG 0.014 3.326
LH2_Sphaeroides.pdb #1.1/A BCL 101 CAA LH2_Sphaeroides.pdb #1.1/A SER 27 OG 0.014 3.326
LH2_Sphaeroides.pdb #1.2/K BCL 101 CMA LH2_Sphaeroides.pdb #1.2/A 7OT 103 C13 0.013 3.747
LH2_Sphaeroides.pdb #1.1/K BCL 101 CMA LH2_Sphaeroides.pdb #1.1/A 7OT 103 C13 0.013 3.747
LH2_Sphaeroides.pdb #1.2/K BCL 101 C4D LH2_Sphaeroides.pdb #1.2/K HIS 40 CE1 0.007 3.363
LH2_Sphaeroides.pdb #1.1/K BCL 101 C4D LH2_Sphaeroides.pdb #1.1/K HIS 40 CE1 0.007 3.363
LH2_Sphaeroides.pdb #1.2/A BCL 101 CHB LH2_Sphaeroides.pdb #1.2/A 7OT 103 C8 -0.003 3.643
LH2_Sphaeroides.pdb #1.1/A BCL 101 CHB LH2_Sphaeroides.pdb #1.1/A 7OT 103 C8 -0.003 3.643
LH2_Sphaeroides.pdb #1.2/A BCL 101 CAD LH2_Sphaeroides.pdb #1.2/J ALA 39 CB -0.003 3.493
LH2_Sphaeroides.pdb #1.1/A BCL 101 CAD LH2_Sphaeroides.pdb #1.1/J ALA 39 CB -0.003 3.493
LH2_Sphaeroides.pdb #1.2/K BCL 101 CHD LH2_Sphaeroides.pdb #1.2/B ILE 30 CG2 -0.009 3.649
LH2_Sphaeroides.pdb #1.1/K BCL 101 CHD LH2_Sphaeroides.pdb #1.1/B ILE 30 CG2 -0.009 3.649
LH2_Sphaeroides.pdb #1.2/K BCL 101 OBD LH2_Sphaeroides.pdb #1.2/B SER 27 CB -0.010 3.310
LH2_Sphaeroides.pdb #1.1/K BCL 101 OBD LH2_Sphaeroides.pdb #1.1/B SER 27 CB -0.010 3.310
LH2_Sphaeroides.pdb #1.2/K BCL 101 CBA LH2_Sphaeroides.pdb #1.2/A 7OT 103 C16 -0.010 3.650
LH2_Sphaeroides.pdb #1.1/K BCL 101 CBA LH2_Sphaeroides.pdb #1.1/A 7OT 103 C16 -0.010 3.650
LH2_Sphaeroides.pdb #1.2/A BCL 101 CMA LH2_Sphaeroides.pdb #1.2/J MET 35 CE -0.027 3.787
LH2_Sphaeroides.pdb #1.1/A BCL 101 CMA LH2_Sphaeroides.pdb #1.1/J MET 35 CE -0.027 3.787
LH2_Sphaeroides.pdb #1.2/A BCL 101 CBB LH2_Sphaeroides.pdb #1.2/B ILE 30 CG2 -0.034 3.794
LH2_Sphaeroides.pdb #1.1/A BCL 101 CBB LH2_Sphaeroides.pdb #1.1/B ILE 30 CG2 -0.034 3.794
LH2_Sphaeroides.pdb #1.2/K BCL 101 CBA LH2_Sphaeroides.pdb #1.2/B BCL 102 C4 -0.040 3.800
LH2_Sphaeroides.pdb #1.1/K BCL 101 CBA LH2_Sphaeroides.pdb #1.1/B BCL 102 C4 -0.040 3.800
LH2_Sphaeroides.pdb #1.2/A BCL 101 CBC LH2_Sphaeroides.pdb #1.2/A HIS 31 CD2 -0.041 3.681
LH2_Sphaeroides.pdb #1.1/A BCL 101 CBC LH2_Sphaeroides.pdb #1.1/A HIS 31 CD2 -0.041 3.681
LH2_Sphaeroides.pdb #1.2/A BCL 101 OBD LH2_Sphaeroides.pdb #1.2/J HIS 40 CE1 -0.046 3.226
LH2_Sphaeroides.pdb #1.1/A BCL 101 OBD LH2_Sphaeroides.pdb #1.1/J HIS 40 CE1 -0.046 3.226
LH2_Sphaeroides.pdb #1.2/A BCL 101 O1D LH2_Sphaeroides.pdb #1.2/J ALA 39 CB -0.048 3.348
LH2_Sphaeroides.pdb #1.1/A BCL 101 O1D LH2_Sphaeroides.pdb #1.1/J ALA 39 CB -0.048 3.348
LH2_Sphaeroides.pdb #1.2/A BCL 101 NB LH2_Sphaeroides.pdb #1.2/A HIS 31 CD2 -0.050 3.450
LH2_Sphaeroides.pdb #1.1/A BCL 101 NB LH2_Sphaeroides.pdb #1.1/A HIS 31 CD2 -0.050 3.450
LH2_Sphaeroides.pdb #1.2/A BCL 101 C2C LH2_Sphaeroides.pdb #1.2/A LEU 41 CD1 -0.050 3.810
LH2_Sphaeroides.pdb #1.1/A BCL 101 C2C LH2_Sphaeroides.pdb #1.1/A LEU 41 CD1 -0.050 3.810
LH2_Sphaeroides.pdb #1.2/A BCL 101 CED LH2_Sphaeroides.pdb #1.2/J PHE 32 CZ -0.051 3.691
LH2_Sphaeroides.pdb #1.1/A BCL 101 CED LH2_Sphaeroides.pdb #1.1/J PHE 32 CZ -0.051 3.691
LH2_Sphaeroides.pdb #1.2/K BCL 101 OBB LH2_Sphaeroides.pdb #1.2/A TYR 44 CE2 -0.056 3.236
LH2_Sphaeroides.pdb #1.1/K BCL 101 OBB LH2_Sphaeroides.pdb #1.1/A TYR 44 CE2 -0.056 3.236
LH2_Sphaeroides.pdb #1.2/K BCL 101 CMD LH2_Sphaeroides.pdb #1.2/B BCL 101 C2D -0.058 3.548
LH2_Sphaeroides.pdb #1.1/K BCL 101 CMD LH2_Sphaeroides.pdb #1.1/B BCL 101 C2D -0.058 3.548
LH2_Sphaeroides.pdb #1.2/A BCL 101 OBB LH2_Sphaeroides.pdb #1.2/A TYR 45 OH -0.070 2.550
LH2_Sphaeroides.pdb #1.1/A BCL 101 OBB LH2_Sphaeroides.pdb #1.1/A TYR 45 OH -0.070 2.550
LH2_Sphaeroides.pdb #1.2/K BCL 101 O2A LH2_Sphaeroides.pdb #1.2/B BCL 102 C4 -0.070 3.410
LH2_Sphaeroides.pdb #1.1/K BCL 101 O2A LH2_Sphaeroides.pdb #1.1/B BCL 102 C4 -0.070 3.410
LH2_Sphaeroides.pdb #1.2/K BCL 101 O2D LH2_Sphaeroides.pdb #1.2/K PHE 32 CZ -0.072 3.292
LH2_Sphaeroides.pdb #1.1/K BCL 101 O2D LH2_Sphaeroides.pdb #1.1/K PHE 32 CZ -0.072 3.292
LH2_Sphaeroides.pdb #1.2/K BCL 101 C2D LH2_Sphaeroides.pdb #1.2/B ILE 30 CG2 -0.075 3.565
LH2_Sphaeroides.pdb #1.1/K BCL 101 C2D LH2_Sphaeroides.pdb #1.1/B ILE 30 CG2 -0.075 3.565
LH2_Sphaeroides.pdb #1.2/A BCL 101 CED LH2_Sphaeroides.pdb #1.2/J MET 35 CB -0.080 3.840
LH2_Sphaeroides.pdb #1.1/A BCL 101 CED LH2_Sphaeroides.pdb #1.1/J MET 35 CB -0.080 3.840
LH2_Sphaeroides.pdb #1.2/A BCL 101 OBD LH2_Sphaeroides.pdb #1.2/J ALA 36 CB -0.083 3.383
LH2_Sphaeroides.pdb #1.1/A BCL 101 OBD LH2_Sphaeroides.pdb #1.1/J ALA 36 CB -0.083 3.383
LH2_Sphaeroides.pdb #1.2/K BCL 101 CMD LH2_Sphaeroides.pdb #1.2/B HIS 31 CD2 -0.085 3.725
LH2_Sphaeroides.pdb #1.1/K BCL 101 CMD LH2_Sphaeroides.pdb #1.1/B HIS 31 CD2 -0.085 3.725
LH2_Sphaeroides.pdb #1.2/A BCL 101 CED LH2_Sphaeroides.pdb #1.2/J PHE 32 CE2 -0.085 3.725
LH2_Sphaeroides.pdb #1.1/A BCL 101 CED LH2_Sphaeroides.pdb #1.1/J PHE 32 CE2 -0.085 3.725
LH2_Sphaeroides.pdb #1.2/K BCL 101 OBB LH2_Sphaeroides.pdb #1.2/A TYR 44 OH -0.086 2.566
LH2_Sphaeroides.pdb #1.1/K BCL 101 OBB LH2_Sphaeroides.pdb #1.1/A TYR 44 OH -0.086 2.566
LH2_Sphaeroides.pdb #1.2/K BCL 101 CBA LH2_Sphaeroides.pdb #1.2/A 7OT 103 C15 -0.086 3.726
LH2_Sphaeroides.pdb #1.1/K BCL 101 CBA LH2_Sphaeroides.pdb #1.1/A 7OT 103 C15 -0.086 3.726
LH2_Sphaeroides.pdb #1.2/K BCL 101 OBD LH2_Sphaeroides.pdb #1.2/B BCL 101 CBD -0.089 3.389
LH2_Sphaeroides.pdb #1.1/K BCL 101 OBD LH2_Sphaeroides.pdb #1.1/B BCL 101 CBD -0.089 3.389
LH2_Sphaeroides.pdb #1.2/A BCL 101 CED LH2_Sphaeroides.pdb #1.2/J MET 35 SD -0.094 3.744
LH2_Sphaeroides.pdb #1.1/A BCL 101 CED LH2_Sphaeroides.pdb #1.1/J MET 35 SD -0.094 3.744
LH2_Sphaeroides.pdb #1.2/K BCL 101 CED LH2_Sphaeroides.pdb #1.2/B SER 27 CB -0.098 3.858
LH2_Sphaeroides.pdb #1.1/K BCL 101 CED LH2_Sphaeroides.pdb #1.1/B SER 27 CB -0.098 3.858
LH2_Sphaeroides.pdb #1.2/A BCL 101 CMD LH2_Sphaeroides.pdb #1.2/J HIS 40 ND1 -0.104 3.624
LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD LH2_Sphaeroides.pdb #1.1/J HIS 40 ND1 -0.104 3.624
LH2_Sphaeroides.pdb #1.2/A BCL 101 CMB LH2_Sphaeroides.pdb #1.2/K BCL 101 NA -0.104 3.624
LH2_Sphaeroides.pdb #1.1/A BCL 101 CMB LH2_Sphaeroides.pdb #1.1/K BCL 101 NA -0.104 3.624
LH2_Sphaeroides.pdb #1.2/K BCL 101 O1A LH2_Sphaeroides.pdb #1.2/K PHE 32 CD1 -0.106 3.286
LH2_Sphaeroides.pdb #1.1/K BCL 101 O1A LH2_Sphaeroides.pdb #1.1/K PHE 32 CD1 -0.106 3.286
LH2_Sphaeroides.pdb #1.2/A BCL 101 CMB LH2_Sphaeroides.pdb #1.2/A 7OT 103 C9 -0.108 3.748
LH2_Sphaeroides.pdb #1.1/A BCL 101 CMB LH2_Sphaeroides.pdb #1.1/A 7OT 103 C9 -0.108 3.748
LH2_Sphaeroides.pdb #1.2/A BCL 101 CMB LH2_Sphaeroides.pdb #1.2/K BCL 101 C1B -0.109 3.599
LH2_Sphaeroides.pdb #1.1/A BCL 101 CMB LH2_Sphaeroides.pdb #1.1/K BCL 101 C1B -0.109 3.599
LH2_Sphaeroides.pdb #1.2/K BCL 101 O1A LH2_Sphaeroides.pdb #1.2/K GLY 33 CA -0.110 3.410
LH2_Sphaeroides.pdb #1.1/K BCL 101 O1A LH2_Sphaeroides.pdb #1.1/K GLY 33 CA -0.110 3.410
LH2_Sphaeroides.pdb #1.2/A BCL 101 CBB LH2_Sphaeroides.pdb #1.2/K BCL 101 NC -0.114 3.634
LH2_Sphaeroides.pdb #1.1/A BCL 101 CBB LH2_Sphaeroides.pdb #1.1/K BCL 101 NC -0.114 3.634
LH2_Sphaeroides.pdb #1.2/A BCL 101 OBD LH2_Sphaeroides.pdb #1.2/J ALA 36 CA -0.115 3.415
LH2_Sphaeroides.pdb #1.1/A BCL 101 OBD LH2_Sphaeroides.pdb #1.1/J ALA 36 CA -0.115 3.415
LH2_Sphaeroides.pdb #1.2/A BCL 101 CMD LH2_Sphaeroides.pdb #1.2/J HIS 40 CE1 -0.117 3.757
LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD LH2_Sphaeroides.pdb #1.1/J HIS 40 CE1 -0.117 3.757
LH2_Sphaeroides.pdb #1.2/A BCL 101 CBC LH2_Sphaeroides.pdb #1.2/A VAL 34 CG1 -0.120 3.880
LH2_Sphaeroides.pdb #1.1/A BCL 101 CBC LH2_Sphaeroides.pdb #1.1/A VAL 34 CG1 -0.120 3.880
LH2_Sphaeroides.pdb #1.2/K BCL 101 CMD LH2_Sphaeroides.pdb #1.2/B BCL 101 C4D -0.122 3.612
LH2_Sphaeroides.pdb #1.1/K BCL 101 CMD LH2_Sphaeroides.pdb #1.1/B BCL 101 C4D -0.122 3.612
LH2_Sphaeroides.pdb #1.2/A BCL 101 CMD LH2_Sphaeroides.pdb #1.2/J ALA 43 CB -0.123 3.883
LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD LH2_Sphaeroides.pdb #1.1/J ALA 43 CB -0.123 3.883
LH2_Sphaeroides.pdb #1.2/K BCL 101 CMA LH2_Sphaeroides.pdb #1.2/A 7OT 103 C12 -0.126 3.616
LH2_Sphaeroides.pdb #1.1/K BCL 101 CMA LH2_Sphaeroides.pdb #1.1/A 7OT 103 C12 -0.126 3.616
LH2_Sphaeroides.pdb #1.2/K BCL 101 C1D LH2_Sphaeroides.pdb #1.2/B BCL 101 CMD -0.139 3.629
LH2_Sphaeroides.pdb #1.1/K BCL 101 C1D LH2_Sphaeroides.pdb #1.1/B BCL 101 CMD -0.139 3.629
LH2_Sphaeroides.pdb #1.2/A BCL 101 CMA LH2_Sphaeroides.pdb #1.2/B BCL 102 C6 -0.141 3.901
LH2_Sphaeroides.pdb #1.1/A BCL 101 CMA LH2_Sphaeroides.pdb #1.1/B BCL 102 C6 -0.141 3.901
LH2_Sphaeroides.pdb #1.2/A BCL 101 CED LH2_Sphaeroides.pdb #1.2/J ALA 36 N -0.141 3.661
LH2_Sphaeroides.pdb #1.1/A BCL 101 CED LH2_Sphaeroides.pdb #1.1/J ALA 36 N -0.141 3.661
LH2_Sphaeroides.pdb #1.2/A BCL 101 CBB LH2_Sphaeroides.pdb #1.2/A TYR 45 OH -0.145 3.485
LH2_Sphaeroides.pdb #1.1/A BCL 101 CBB LH2_Sphaeroides.pdb #1.1/A TYR 45 OH -0.145 3.485
LH2_Sphaeroides.pdb #1.2/A BCL 101 O1A LH2_Sphaeroides.pdb #1.2/A SER 27 CB -0.146 3.446
LH2_Sphaeroides.pdb #1.1/A BCL 101 O1A LH2_Sphaeroides.pdb #1.1/A SER 27 CB -0.146 3.446
LH2_Sphaeroides.pdb #1.2/A BCL 101 OBB LH2_Sphaeroides.pdb #1.2/A TYR 45 CE1 -0.148 3.328
LH2_Sphaeroides.pdb #1.1/A BCL 101 OBB LH2_Sphaeroides.pdb #1.1/A TYR 45 CE1 -0.148 3.328
LH2_Sphaeroides.pdb #1.2/A BCL 101 CMB LH2_Sphaeroides.pdb #1.2/K BCL 101 CMA -0.150 3.910
LH2_Sphaeroides.pdb #1.1/A BCL 101 CMB LH2_Sphaeroides.pdb #1.1/K BCL 101 CMA -0.150 3.910
LH2_Sphaeroides.pdb #1.2/A BCL 101 CMD LH2_Sphaeroides.pdb #1.2/J HIS 40 CA -0.157 3.917
LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD LH2_Sphaeroides.pdb #1.1/J HIS 40 CA -0.157 3.917
LH2_Sphaeroides.pdb #1.2/A BCL 101 NB LH2_Sphaeroides.pdb #1.2/A HIS 31 NE2 -0.157 3.037
LH2_Sphaeroides.pdb #1.1/A BCL 101 NB LH2_Sphaeroides.pdb #1.1/A HIS 31 NE2 -0.157 3.037
LH2_Sphaeroides.pdb #1.2/K BCL 101 CMD LH2_Sphaeroides.pdb #1.2/B ILE 30 CG2 -0.159 3.919
LH2_Sphaeroides.pdb #1.1/K BCL 101 CMD LH2_Sphaeroides.pdb #1.1/B ILE 30 CG2 -0.159 3.919
LH2_Sphaeroides.pdb #1.2/K BCL 101 CAD LH2_Sphaeroides.pdb #1.2/B BCL 101 CBD -0.160 3.650
LH2_Sphaeroides.pdb #1.1/K BCL 101 CAD LH2_Sphaeroides.pdb #1.1/B BCL 101 CBD -0.160 3.650
LH2_Sphaeroides.pdb #1.2/K BCL 101 O2A LH2_Sphaeroides.pdb #1.2/A 7OT 103 C18 -0.161 3.501
LH2_Sphaeroides.pdb #1.1/K BCL 101 O2A LH2_Sphaeroides.pdb #1.1/A 7OT 103 C18 -0.161 3.501
LH2_Sphaeroides.pdb #1.2/A BCL 101 CBC LH2_Sphaeroides.pdb #1.2/A VAL 34 CB -0.171 3.931
LH2_Sphaeroides.pdb #1.1/A BCL 101 CBC LH2_Sphaeroides.pdb #1.1/A VAL 34 CB -0.171 3.931
LH2_Sphaeroides.pdb #1.2/K BCL 101 CMD LH2_Sphaeroides.pdb #1.2/B BCL 101 C3D -0.178 3.668
LH2_Sphaeroides.pdb #1.1/K BCL 101 CMD LH2_Sphaeroides.pdb #1.1/B BCL 101 C3D -0.178 3.668
LH2_Sphaeroides.pdb #1.2/A BCL 101 CAB LH2_Sphaeroides.pdb #1.2/A TYR 45 OH -0.178 3.248
LH2_Sphaeroides.pdb #1.1/A BCL 101 CAB LH2_Sphaeroides.pdb #1.1/A TYR 45 OH -0.178 3.248
LH2_Sphaeroides.pdb #1.2/A BCL 101 CED LH2_Sphaeroides.pdb #1.2/J ALA 36 CA -0.185 3.945
LH2_Sphaeroides.pdb #1.1/A BCL 101 CED LH2_Sphaeroides.pdb #1.1/J ALA 36 CA -0.185 3.945
LH2_Sphaeroides.pdb #1.2/K BCL 101 CHA LH2_Sphaeroides.pdb #1.2/K HIS 40 CE1 -0.187 3.557
LH2_Sphaeroides.pdb #1.1/K BCL 101 CHA LH2_Sphaeroides.pdb #1.1/K HIS 40 CE1 -0.187 3.557
LH2_Sphaeroides.pdb #1.2/A BCL 101 CMB LH2_Sphaeroides.pdb #1.2/B ILE 30 CD1 -0.188 3.948
LH2_Sphaeroides.pdb #1.1/A BCL 101 CMB LH2_Sphaeroides.pdb #1.1/B ILE 30 CD1 -0.188 3.948
LH2_Sphaeroides.pdb #1.2/A BCL 101 CED LH2_Sphaeroides.pdb #1.2/J PHE 32 CE1 -0.192 3.832
LH2_Sphaeroides.pdb #1.1/A BCL 101 CED LH2_Sphaeroides.pdb #1.1/J PHE 32 CE1 -0.192 3.832
LH2_Sphaeroides.pdb #1.2/K BCL 101 O2D LH2_Sphaeroides.pdb #1.2/K PHE 32 CE1 -0.193 3.413
LH2_Sphaeroides.pdb #1.1/K BCL 101 O2D LH2_Sphaeroides.pdb #1.1/K PHE 32 CE1 -0.193 3.413
LH2_Sphaeroides.pdb #1.2/A BCL 101 CHC LH2_Sphaeroides.pdb #1.2/A HIS 31 CD2 -0.197 3.717
LH2_Sphaeroides.pdb #1.1/A BCL 101 CHC LH2_Sphaeroides.pdb #1.1/A HIS 31 CD2 -0.197 3.717
LH2_Sphaeroides.pdb #1.2/A BCL 101 CGA LH2_Sphaeroides.pdb #1.2/A SER 27 CB -0.198 3.688
LH2_Sphaeroides.pdb #1.1/A BCL 101 CGA LH2_Sphaeroides.pdb #1.1/A SER 27 CB -0.198 3.688
LH2_Sphaeroides.pdb #1.2/A BCL 101 CAC LH2_Sphaeroides.pdb #1.2/A TRP 40 CH2 -0.200 3.840
LH2_Sphaeroides.pdb #1.1/A BCL 101 CAC LH2_Sphaeroides.pdb #1.1/A TRP 40 CH2 -0.200 3.840
LH2_Sphaeroides.pdb #1.2/A BCL 101 CMC LH2_Sphaeroides.pdb #1.2/K BCL 101 CBB -0.207 3.967
LH2_Sphaeroides.pdb #1.1/A BCL 101 CMC LH2_Sphaeroides.pdb #1.1/K BCL 101 CBB -0.207 3.967
LH2_Sphaeroides.pdb #1.2/A BCL 101 CBB LH2_Sphaeroides.pdb #1.2/K BCL 101 C1C -0.208 3.698
LH2_Sphaeroides.pdb #1.1/A BCL 101 CBB LH2_Sphaeroides.pdb #1.1/K BCL 101 C1C -0.208 3.698
LH2_Sphaeroides.pdb #1.2/K BCL 101 NC LH2_Sphaeroides.pdb #1.2/K HIS 40 CD2 -0.221 3.621
LH2_Sphaeroides.pdb #1.1/K BCL 101 NC LH2_Sphaeroides.pdb #1.1/K HIS 40 CD2 -0.221 3.621
LH2_Sphaeroides.pdb #1.2/A BCL 101 CED LH2_Sphaeroides.pdb #1.2/J ALA 36 CB -0.225 3.985
LH2_Sphaeroides.pdb #1.1/A BCL 101 CED LH2_Sphaeroides.pdb #1.1/J ALA 36 CB -0.225 3.985
LH2_Sphaeroides.pdb #1.2/K BCL 101 CED LH2_Sphaeroides.pdb #1.2/K PHE 32 CE1 -0.227 3.867
LH2_Sphaeroides.pdb #1.1/K BCL 101 CED LH2_Sphaeroides.pdb #1.1/K PHE 32 CE1 -0.227 3.867
LH2_Sphaeroides.pdb #1.2/A BCL 101 CED LH2_Sphaeroides.pdb #1.2/J PHE 32 O -0.239 3.539
LH2_Sphaeroides.pdb #1.1/A BCL 101 CED LH2_Sphaeroides.pdb #1.1/J PHE 32 O -0.239 3.539
LH2_Sphaeroides.pdb #1.2/A BCL 101 CBB LH2_Sphaeroides.pdb #1.2/K BCL 101 CHC -0.246 3.886
LH2_Sphaeroides.pdb #1.1/A BCL 101 CBB LH2_Sphaeroides.pdb #1.1/K BCL 101 CHC -0.246 3.886
LH2_Sphaeroides.pdb #1.2/K BCL 101 C1A LH2_Sphaeroides.pdb #1.2/K HIS 40 CE1 -0.258 3.628
LH2_Sphaeroides.pdb #1.1/K BCL 101 C1A LH2_Sphaeroides.pdb #1.1/K HIS 40 CE1 -0.258 3.628
LH2_Sphaeroides.pdb #1.2/K BCL 101 NC LH2_Sphaeroides.pdb #1.2/K HIS 40 NE2 -0.259 3.139
LH2_Sphaeroides.pdb #1.1/K BCL 101 NC LH2_Sphaeroides.pdb #1.1/K HIS 40 NE2 -0.259 3.139
LH2_Sphaeroides.pdb #1.2/A BCL 101 CBB LH2_Sphaeroides.pdb #1.2/A 7OT 103 C3 -0.259 4.019
LH2_Sphaeroides.pdb #1.1/A BCL 101 CBB LH2_Sphaeroides.pdb #1.1/A 7OT 103 C3 -0.259 4.019
LH2_Sphaeroides.pdb #1.2/A BCL 101 C2D LH2_Sphaeroides.pdb #1.2/J ALA 39 CB -0.259 3.749
LH2_Sphaeroides.pdb #1.1/A BCL 101 C2D LH2_Sphaeroides.pdb #1.1/J ALA 39 CB -0.259 3.749
LH2_Sphaeroides.pdb #1.2/A BCL 101 CED LH2_Sphaeroides.pdb #1.2/J PHE 32 CD2 -0.262 3.902
LH2_Sphaeroides.pdb #1.1/A BCL 101 CED LH2_Sphaeroides.pdb #1.1/J PHE 32 CD2 -0.262 3.902
LH2_Sphaeroides.pdb #1.2/K BCL 101 OBD LH2_Sphaeroides.pdb #1.2/B SER 27 OG -0.269 2.749
LH2_Sphaeroides.pdb #1.1/K BCL 101 OBD LH2_Sphaeroides.pdb #1.1/B SER 27 OG -0.269 2.749
LH2_Sphaeroides.pdb #1.2/A BCL 101 CMD LH2_Sphaeroides.pdb #1.2/J ALA 39 C -0.270 3.760
LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD LH2_Sphaeroides.pdb #1.1/J ALA 39 C -0.270 3.760
LH2_Sphaeroides.pdb #1.2/K BCL 101 CMA LH2_Sphaeroides.pdb #1.2/A 7OT 103 C11 -0.281 3.921
LH2_Sphaeroides.pdb #1.1/K BCL 101 CMA LH2_Sphaeroides.pdb #1.1/A 7OT 103 C11 -0.281 3.921
LH2_Sphaeroides.pdb #1.2/K BCL 101 CMD LH2_Sphaeroides.pdb #1.2/B HIS 31 CG -0.292 3.782
LH2_Sphaeroides.pdb #1.1/K BCL 101 CMD LH2_Sphaeroides.pdb #1.1/B HIS 31 CG -0.292 3.782
LH2_Sphaeroides.pdb #1.2/K BCL 101 OBB LH2_Sphaeroides.pdb #1.2/A TYR 44 CZ -0.293 3.323
LH2_Sphaeroides.pdb #1.1/K BCL 101 OBB LH2_Sphaeroides.pdb #1.1/A TYR 44 CZ -0.293 3.323
LH2_Sphaeroides.pdb #1.2/A BCL 101 CAC LH2_Sphaeroides.pdb #1.2/A VAL 34 CG1 -0.296 4.056
LH2_Sphaeroides.pdb #1.1/A BCL 101 CAC LH2_Sphaeroides.pdb #1.1/A VAL 34 CG1 -0.296 4.056
LH2_Sphaeroides.pdb #1.2/A BCL 101 CMB LH2_Sphaeroides.pdb #1.2/A 7OT 103 C10 -0.301 3.941
LH2_Sphaeroides.pdb #1.1/A BCL 101 CMB LH2_Sphaeroides.pdb #1.1/A 7OT 103 C10 -0.301 3.941
LH2_Sphaeroides.pdb #1.2/A BCL 101 C4B LH2_Sphaeroides.pdb #1.2/A HIS 31 CD2 -0.304 3.674
LH2_Sphaeroides.pdb #1.1/A BCL 101 C4B LH2_Sphaeroides.pdb #1.1/A HIS 31 CD2 -0.304 3.674
LH2_Sphaeroides.pdb #1.2/K BCL 101 NB LH2_Sphaeroides.pdb #1.2/K HIS 40 NE2 -0.305 3.185
LH2_Sphaeroides.pdb #1.1/K BCL 101 NB LH2_Sphaeroides.pdb #1.1/K HIS 40 NE2 -0.305 3.185
LH2_Sphaeroides.pdb #1.2/A BCL 101 CMD LH2_Sphaeroides.pdb #1.2/J ALA 39 O -0.311 3.611
LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD LH2_Sphaeroides.pdb #1.1/J ALA 39 O -0.311 3.611
LH2_Sphaeroides.pdb #1.2/A BCL 101 OBB LH2_Sphaeroides.pdb #1.2/A TYR 45 CZ -0.315 3.345
LH2_Sphaeroides.pdb #1.1/A BCL 101 OBB LH2_Sphaeroides.pdb #1.1/A TYR 45 CZ -0.315 3.345
LH2_Sphaeroides.pdb #1.2/A BCL 101 C1C LH2_Sphaeroides.pdb #1.2/A HIS 31 CD2 -0.317 3.687
LH2_Sphaeroides.pdb #1.1/A BCL 101 C1C LH2_Sphaeroides.pdb #1.1/A HIS 31 CD2 -0.317 3.687
LH2_Sphaeroides.pdb #1.2/A BCL 101 CHC LH2_Sphaeroides.pdb #1.2/K BCL 101 CBB -0.318 3.958
LH2_Sphaeroides.pdb #1.1/A BCL 101 CHC LH2_Sphaeroides.pdb #1.1/K BCL 101 CBB -0.318 3.958
LH2_Sphaeroides.pdb #1.2/K BCL 101 NB LH2_Sphaeroides.pdb #1.2/K HIS 40 CD2 -0.321 3.721
LH2_Sphaeroides.pdb #1.1/K BCL 101 NB LH2_Sphaeroides.pdb #1.1/K HIS 40 CD2 -0.321 3.721
LH2_Sphaeroides.pdb #1.2/K BCL 101 O1A LH2_Sphaeroides.pdb #1.2/K ALA 36 CB -0.323 3.623
LH2_Sphaeroides.pdb #1.1/K BCL 101 O1A LH2_Sphaeroides.pdb #1.1/K ALA 36 CB -0.323 3.623
LH2_Sphaeroides.pdb #1.2/K BCL 101 O1D LH2_Sphaeroides.pdb #1.2/A 7OT 103 C14 -0.333 3.513
LH2_Sphaeroides.pdb #1.1/K BCL 101 O1D LH2_Sphaeroides.pdb #1.1/A 7OT 103 C14 -0.333 3.513
LH2_Sphaeroides.pdb #1.2/A BCL 101 NC LH2_Sphaeroides.pdb #1.2/A HIS 31 NE2 -0.333 3.213
LH2_Sphaeroides.pdb #1.1/A BCL 101 NC LH2_Sphaeroides.pdb #1.1/A HIS 31 NE2 -0.333 3.213
LH2_Sphaeroides.pdb #1.2/A BCL 101 CBC LH2_Sphaeroides.pdb #1.2/A LEU 41 CD2 -0.335 4.095
LH2_Sphaeroides.pdb #1.1/A BCL 101 CBC LH2_Sphaeroides.pdb #1.1/A LEU 41 CD2 -0.335 4.095
LH2_Sphaeroides.pdb #1.2/K BCL 101 CMD LH2_Sphaeroides.pdb #1.2/B BCL 101 CHD -0.336 3.976
LH2_Sphaeroides.pdb #1.1/K BCL 101 CMD LH2_Sphaeroides.pdb #1.1/B BCL 101 CHD -0.336 3.976
LH2_Sphaeroides.pdb #1.2/A BCL 101 C1B LH2_Sphaeroides.pdb #1.2/K BCL 101 CMB -0.337 3.827
LH2_Sphaeroides.pdb #1.1/A BCL 101 C1B LH2_Sphaeroides.pdb #1.1/K BCL 101 CMB -0.337 3.827
LH2_Sphaeroides.pdb #1.2/A BCL 101 CGD LH2_Sphaeroides.pdb #1.2/J ALA 36 CA -0.338 3.828
LH2_Sphaeroides.pdb #1.1/A BCL 101 CGD LH2_Sphaeroides.pdb #1.1/J ALA 36 CA -0.338 3.828
LH2_Sphaeroides.pdb #1.2/K BCL 101 CED LH2_Sphaeroides.pdb #1.2/B SER 27 N -0.339 3.859
LH2_Sphaeroides.pdb #1.1/K BCL 101 CED LH2_Sphaeroides.pdb #1.1/B SER 27 N -0.339 3.859
LH2_Sphaeroides.pdb #1.2/A BCL 101 CMA LH2_Sphaeroides.pdb #1.2/K BCL 101 CMA -0.339 4.099
LH2_Sphaeroides.pdb #1.1/A BCL 101 CMA LH2_Sphaeroides.pdb #1.1/K BCL 101 CMA -0.339 4.099
LH2_Sphaeroides.pdb #1.2/A BCL 101 CMD LH2_Sphaeroides.pdb #1.2/J HIS 40 N -0.340 3.860
LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD LH2_Sphaeroides.pdb #1.1/J HIS 40 N -0.340 3.860
LH2_Sphaeroides.pdb #1.2/A BCL 101 CMD LH2_Sphaeroides.pdb #1.2/J ALA 39 CB -0.346 4.106
LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD LH2_Sphaeroides.pdb #1.1/J ALA 39 CB -0.346 4.106
LH2_Sphaeroides.pdb #1.2/A BCL 101 ND LH2_Sphaeroides.pdb #1.2/A HIS 31 CE1 -0.350 3.750
LH2_Sphaeroides.pdb #1.1/A BCL 101 ND LH2_Sphaeroides.pdb #1.1/A HIS 31 CE1 -0.350 3.750
LH2_Sphaeroides.pdb #1.2/K BCL 101 CBC LH2_Sphaeroides.pdb #1.2/B TRP 40 CZ2 -0.351 3.991
LH2_Sphaeroides.pdb #1.1/K BCL 101 CBC LH2_Sphaeroides.pdb #1.1/B TRP 40 CZ2 -0.351 3.991
LH2_Sphaeroides.pdb #1.2/A BCL 101 CGA LH2_Sphaeroides.pdb #1.2/A SER 27 OG -0.352 3.422
LH2_Sphaeroides.pdb #1.1/A BCL 101 CGA LH2_Sphaeroides.pdb #1.1/A SER 27 OG -0.352 3.422
LH2_Sphaeroides.pdb #1.2/A BCL 101 C1A LH2_Sphaeroides.pdb #1.2/A HIS 31 CE1 -0.359 3.729
LH2_Sphaeroides.pdb #1.1/A BCL 101 C1A LH2_Sphaeroides.pdb #1.1/A HIS 31 CE1 -0.359 3.729
LH2_Sphaeroides.pdb #1.2/K BCL 101 CMB LH2_Sphaeroides.pdb #1.2/B BCL 102 C11 -0.361 4.121
LH2_Sphaeroides.pdb #1.1/K BCL 101 CMB LH2_Sphaeroides.pdb #1.1/B BCL 102 C11 -0.361 4.121
LH2_Sphaeroides.pdb #1.2/A BCL 101 CED LH2_Sphaeroides.pdb #1.2/J PHE 32 CD1 -0.362 4.002
LH2_Sphaeroides.pdb #1.1/A BCL 101 CED LH2_Sphaeroides.pdb #1.1/J PHE 32 CD1 -0.362 4.002
LH2_Sphaeroides.pdb #1.2/K BCL 101 C2D LH2_Sphaeroides.pdb #1.2/B BCL 101 C2D -0.362 3.582
LH2_Sphaeroides.pdb #1.1/K BCL 101 C2D LH2_Sphaeroides.pdb #1.1/B BCL 101 C2D -0.362 3.582
LH2_Sphaeroides.pdb #1.2/A BCL 101 O1D LH2_Sphaeroides.pdb #1.2/J MET 35 CG -0.363 3.663
LH2_Sphaeroides.pdb #1.1/A BCL 101 O1D LH2_Sphaeroides.pdb #1.1/J MET 35 CG -0.363 3.663
LH2_Sphaeroides.pdb #1.2/K BCL 101 CAC LH2_Sphaeroides.pdb #1.2/K ALA 43 CB -0.365 4.125
LH2_Sphaeroides.pdb #1.1/K BCL 101 CAC LH2_Sphaeroides.pdb #1.1/K ALA 43 CB -0.365 4.125
LH2_Sphaeroides.pdb #1.2/K BCL 101 C3D LH2_Sphaeroides.pdb #1.2/B BCL 101 CAD -0.366 3.586
LH2_Sphaeroides.pdb #1.1/K BCL 101 C3D LH2_Sphaeroides.pdb #1.1/B BCL 101 CAD -0.366 3.586
LH2_Sphaeroides.pdb #1.2/A BCL 101 O2D LH2_Sphaeroides.pdb #1.2/J PHE 32 CZ -0.367 3.587
LH2_Sphaeroides.pdb #1.1/A BCL 101 O2D LH2_Sphaeroides.pdb #1.1/J PHE 32 CZ -0.367 3.587
LH2_Sphaeroides.pdb #1.2/K BCL 101 CAD LH2_Sphaeroides.pdb #1.2/B BCL 101 CAD -0.370 3.590
LH2_Sphaeroides.pdb #1.1/K BCL 101 CAD LH2_Sphaeroides.pdb #1.1/B BCL 101 CAD -0.370 3.590
LH2_Sphaeroides.pdb #1.2/K BCL 101 C2D LH2_Sphaeroides.pdb #1.2/B BCL 101 C3D -0.371 3.591
LH2_Sphaeroides.pdb #1.1/K BCL 101 C2D LH2_Sphaeroides.pdb #1.1/B BCL 101 C3D -0.371 3.591
LH2_Sphaeroides.pdb #1.2/A BCL 101 O1D LH2_Sphaeroides.pdb #1.2/J ALA 36 CA -0.373 3.673
LH2_Sphaeroides.pdb #1.1/A BCL 101 O1D LH2_Sphaeroides.pdb #1.1/J ALA 36 CA -0.373 3.673
LH2_Sphaeroides.pdb #1.2/K BCL 101 CED LH2_Sphaeroides.pdb #1.2/A 7OT 103 C16 -0.376 4.016
LH2_Sphaeroides.pdb #1.1/K BCL 101 CED LH2_Sphaeroides.pdb #1.1/A 7OT 103 C16 -0.376 4.016
LH2_Sphaeroides.pdb #1.2/K BCL 101 CBA LH2_Sphaeroides.pdb #1.2/A 7OT 103 C14 -0.377 4.017
LH2_Sphaeroides.pdb #1.1/K BCL 101 CBA LH2_Sphaeroides.pdb #1.1/A 7OT 103 C14 -0.377 4.017
LH2_Sphaeroides.pdb #1.2/K BCL 101 C4D LH2_Sphaeroides.pdb #1.2/B ILE 30 CD1 -0.377 3.867
LH2_Sphaeroides.pdb #1.1/K BCL 101 C4D LH2_Sphaeroides.pdb #1.1/B ILE 30 CD1 -0.377 3.867
LH2_Sphaeroides.pdb #1.2/A BCL 101 C1B LH2_Sphaeroides.pdb #1.2/A 7OT 103 C8 -0.378 3.868
LH2_Sphaeroides.pdb #1.1/A BCL 101 C1B LH2_Sphaeroides.pdb #1.1/A 7OT 103 C8 -0.378 3.868
LH2_Sphaeroides.pdb #1.2/A BCL 101 CBB LH2_Sphaeroides.pdb #1.2/K BCL 101 C4B -0.379 3.869
LH2_Sphaeroides.pdb #1.1/A BCL 101 CBB LH2_Sphaeroides.pdb #1.1/K BCL 101 C4B -0.379 3.869
LH2_Sphaeroides.pdb #1.2/K BCL 101 CED LH2_Sphaeroides.pdb #1.2/B SER 27 CA -0.387 4.147
LH2_Sphaeroides.pdb #1.1/K BCL 101 CED LH2_Sphaeroides.pdb #1.1/B SER 27 CA -0.387 4.147
304 contacts
> select #1/A-B:11-38/J-K:20-47/A:101/K:101 &backbone &~@CA
672 atoms, 440 bonds, 224 residues, 2 models selected
> select #1:102
1206 atoms, 1260 bonds, 72 pseudobonds, 36 residues, 4 models selected
> hide sel atoms
> select #1/A:103
84 atoms, 82 bonds, 2 residues, 2 models selected
> color sel orange
> color sel byhetero
> select #1/B:101
132 atoms, 140 bonds, 8 pseudobonds, 2 residues, 4 models selected
> hide sel atoms
> ui tool show Contacts
[Repeated 1 time(s)]
> contacts sel restrict "#1/A-B//J-K ₪פרםאקןמ" resSeparation 5
> ignoreHiddenModels true select true makePseudobonds false reveal true log
> true
Invalid "restrict" argument: mangled atom specifier
> contacts sel restrict "#1/A-B/J-K ₪פרםאקןמ" resSeparation 5
> ignoreHiddenModels true select true makePseudobonds false reveal true log
> true
Invalid "restrict" argument: mangled atom specifier
> contacts sel restrict "#1/A-B/J-K &protein" resSeparation 5
> ignoreHiddenModels true select true makePseudobonds false reveal true log
> true
Allowed overlap: -0.4
H-bond overlap reduction: 0.4
Ignore contacts between atoms separated by 4 bonds or less
Ignore contacts between atoms in residues less than 5 apart in sequence
Detect intra-residue contacts: False
Detect intra-molecule contacts: True
152 contacts
atom1 atom2 overlap distance
LH2_Sphaeroides.pdb #1.2/B BCL 101 MG LH2_Sphaeroides.pdb #1.2/B HIS 31 NE2 0.311 1.899
LH2_Sphaeroides.pdb #1.1/B BCL 101 MG LH2_Sphaeroides.pdb #1.1/B HIS 31 NE2 0.311 1.899
LH2_Sphaeroides.pdb #1.2/B BCL 101 C4 LH2_Sphaeroides.pdb #1.2/B VAL 28 CG2 0.302 3.458
LH2_Sphaeroides.pdb #1.1/B BCL 101 C4 LH2_Sphaeroides.pdb #1.1/B VAL 28 CG2 0.302 3.458
LH2_Sphaeroides.pdb #1.2/B BCL 101 NA LH2_Sphaeroides.pdb #1.2/B HIS 31 NE2 0.257 3.023
LH2_Sphaeroides.pdb #1.1/B BCL 101 NA LH2_Sphaeroides.pdb #1.1/B HIS 31 NE2 0.257 3.023
LH2_Sphaeroides.pdb #1.2/B BCL 101 ND LH2_Sphaeroides.pdb #1.2/B HIS 31 NE2 0.174 3.106
LH2_Sphaeroides.pdb #1.1/B BCL 101 ND LH2_Sphaeroides.pdb #1.1/B HIS 31 NE2 0.174 3.106
LH2_Sphaeroides.pdb #1.2/B BCL 101 C1 LH2_Sphaeroides.pdb #1.2/B SER 27 CB 0.136 3.624
LH2_Sphaeroides.pdb #1.1/B BCL 101 C1 LH2_Sphaeroides.pdb #1.1/B SER 27 CB 0.136 3.624
LH2_Sphaeroides.pdb #1.2/B BCL 101 CED LH2_Sphaeroides.pdb #1.2/K MET 35 CG 0.135 3.625
LH2_Sphaeroides.pdb #1.1/B BCL 101 CED LH2_Sphaeroides.pdb #1.1/K MET 35 CG 0.135 3.625
LH2_Sphaeroides.pdb #1.2/B BCL 101 NA LH2_Sphaeroides.pdb #1.2/B HIS 31 CE1 0.126 3.274
LH2_Sphaeroides.pdb #1.1/B BCL 101 NA LH2_Sphaeroides.pdb #1.1/B HIS 31 CE1 0.126 3.274
LH2_Sphaeroides.pdb #1.2/B BCL 101 C3D LH2_Sphaeroides.pdb #1.2/K ALA 39 CB 0.065 3.425
LH2_Sphaeroides.pdb #1.1/B BCL 101 C3D LH2_Sphaeroides.pdb #1.1/K ALA 39 CB 0.065 3.425
LH2_Sphaeroides.pdb #1.2/B BCL 101 C14 LH2_Sphaeroides.pdb #1.2/B VAL 24 CG2 0.055 3.705
LH2_Sphaeroides.pdb #1.1/B BCL 101 C14 LH2_Sphaeroides.pdb #1.1/B VAL 24 CG2 0.055 3.705
LH2_Sphaeroides.pdb #1.2/B BCL 101 NC LH2_Sphaeroides.pdb #1.2/B HIS 31 CD2 0.045 3.355
LH2_Sphaeroides.pdb #1.1/B BCL 101 NC LH2_Sphaeroides.pdb #1.1/B HIS 31 CD2 0.045 3.355
LH2_Sphaeroides.pdb #1.2/B BCL 101 CAA LH2_Sphaeroides.pdb #1.2/B SER 27 OG 0.033 3.307
LH2_Sphaeroides.pdb #1.1/B BCL 101 CAA LH2_Sphaeroides.pdb #1.1/B SER 27 OG 0.033 3.307
LH2_Sphaeroides.pdb #1.2/B BCL 101 C2 LH2_Sphaeroides.pdb #1.2/B VAL 24 CG1 0.012 3.628
LH2_Sphaeroides.pdb #1.1/B BCL 101 C2 LH2_Sphaeroides.pdb #1.1/B VAL 24 CG1 0.012 3.628
LH2_Sphaeroides.pdb #1.2/B BCL 101 CBC LH2_Sphaeroides.pdb #1.2/B HIS 31 CD2 0.005 3.635
LH2_Sphaeroides.pdb #1.1/B BCL 101 CBC LH2_Sphaeroides.pdb #1.1/B HIS 31 CD2 0.005 3.635
LH2_Sphaeroides.pdb #1.2/B BCL 101 CMA LH2_Sphaeroides.pdb #1.2/K MET 35 CE 0.003 3.757
LH2_Sphaeroides.pdb #1.1/B BCL 101 CMA LH2_Sphaeroides.pdb #1.1/K MET 35 CE 0.003 3.757
LH2_Sphaeroides.pdb #1.2/B BCL 101 OBD LH2_Sphaeroides.pdb #1.2/K HIS 40 CE1 -0.012 3.192
LH2_Sphaeroides.pdb #1.1/B BCL 101 OBD LH2_Sphaeroides.pdb #1.1/K HIS 40 CE1 -0.012 3.192
LH2_Sphaeroides.pdb #1.2/B BCL 101 CAD LH2_Sphaeroides.pdb #1.2/K ALA 39 CB -0.035 3.525
LH2_Sphaeroides.pdb #1.1/B BCL 101 CAD LH2_Sphaeroides.pdb #1.1/K ALA 39 CB -0.035 3.525
LH2_Sphaeroides.pdb #1.2/B BCL 101 CED LH2_Sphaeroides.pdb #1.2/K PHE 32 CZ -0.041 3.681
LH2_Sphaeroides.pdb #1.1/B BCL 101 CED LH2_Sphaeroides.pdb #1.1/K PHE 32 CZ -0.041 3.681
LH2_Sphaeroides.pdb #1.2/B BCL 101 CED LH2_Sphaeroides.pdb #1.2/K MET 35 CB -0.044 3.804
LH2_Sphaeroides.pdb #1.1/B BCL 101 CED LH2_Sphaeroides.pdb #1.1/K MET 35 CB -0.044 3.804
LH2_Sphaeroides.pdb #1.2/B BCL 101 O1D LH2_Sphaeroides.pdb #1.2/K ALA 39 CB -0.044 3.344
LH2_Sphaeroides.pdb #1.1/B BCL 101 O1D LH2_Sphaeroides.pdb #1.1/K ALA 39 CB -0.044 3.344
LH2_Sphaeroides.pdb #1.2/B BCL 101 NB LH2_Sphaeroides.pdb #1.2/B HIS 31 CD2 -0.045 3.445
LH2_Sphaeroides.pdb #1.1/B BCL 101 NB LH2_Sphaeroides.pdb #1.1/B HIS 31 CD2 -0.045 3.445
LH2_Sphaeroides.pdb #1.2/B BCL 101 OBB LH2_Sphaeroides.pdb #1.2/B TYR 45 OH -0.049 2.529
LH2_Sphaeroides.pdb #1.1/B BCL 101 OBB LH2_Sphaeroides.pdb #1.1/B TYR 45 OH -0.049 2.529
LH2_Sphaeroides.pdb #1.2/B BCL 101 OBD LH2_Sphaeroides.pdb #1.2/K ALA 36 CB -0.051 3.351
LH2_Sphaeroides.pdb #1.1/B BCL 101 OBD LH2_Sphaeroides.pdb #1.1/K ALA 36 CB -0.051 3.351
LH2_Sphaeroides.pdb #1.2/B BCL 101 C3 LH2_Sphaeroides.pdb #1.2/B VAL 24 CG1 -0.061 3.551
LH2_Sphaeroides.pdb #1.1/B BCL 101 C3 LH2_Sphaeroides.pdb #1.1/B VAL 24 CG1 -0.061 3.551
LH2_Sphaeroides.pdb #1.2/B BCL 101 CMC LH2_Sphaeroides.pdb #1.2/B LEU 41 CD1 -0.066 3.826
LH2_Sphaeroides.pdb #1.1/B BCL 101 CMC LH2_Sphaeroides.pdb #1.1/B LEU 41 CD1 -0.066 3.826
LH2_Sphaeroides.pdb #1.2/B BCL 101 C2C LH2_Sphaeroides.pdb #1.2/B LEU 41 CD1 -0.067 3.827
LH2_Sphaeroides.pdb #1.1/B BCL 101 C2C LH2_Sphaeroides.pdb #1.1/B LEU 41 CD1 -0.067 3.827
LH2_Sphaeroides.pdb #1.2/B BCL 101 OBD LH2_Sphaeroides.pdb #1.2/K ALA 36 CA -0.079 3.379
LH2_Sphaeroides.pdb #1.1/B BCL 101 OBD LH2_Sphaeroides.pdb #1.1/K ALA 36 CA -0.079 3.379
LH2_Sphaeroides.pdb #1.2/B BCL 101 CMD LH2_Sphaeroides.pdb #1.2/K HIS 40 ND1 -0.081 3.601
LH2_Sphaeroides.pdb #1.1/B BCL 101 CMD LH2_Sphaeroides.pdb #1.1/K HIS 40 ND1 -0.081 3.601
LH2_Sphaeroides.pdb #1.2/B BCL 101 CMD LH2_Sphaeroides.pdb #1.2/K HIS 40 CE1 -0.084 3.724
LH2_Sphaeroides.pdb #1.1/B BCL 101 CMD LH2_Sphaeroides.pdb #1.1/K HIS 40 CE1 -0.084 3.724
LH2_Sphaeroides.pdb #1.2/B BCL 101 CED LH2_Sphaeroides.pdb #1.2/K MET 35 SD -0.089 3.739
LH2_Sphaeroides.pdb #1.1/B BCL 101 CED LH2_Sphaeroides.pdb #1.1/K MET 35 SD -0.089 3.739
LH2_Sphaeroides.pdb #1.2/B BCL 101 CED LH2_Sphaeroides.pdb #1.2/K PHE 32 CE2 -0.091 3.731
LH2_Sphaeroides.pdb #1.1/B BCL 101 CED LH2_Sphaeroides.pdb #1.1/K PHE 32 CE2 -0.091 3.731
LH2_Sphaeroides.pdb #1.2/B BCL 101 C4 LH2_Sphaeroides.pdb #1.2/B VAL 24 CG1 -0.113 3.873
LH2_Sphaeroides.pdb #1.1/B BCL 101 C4 LH2_Sphaeroides.pdb #1.1/B VAL 24 CG1 -0.113 3.873
LH2_Sphaeroides.pdb #1.2/B BCL 101 CED LH2_Sphaeroides.pdb #1.2/K ALA 36 N -0.125 3.645
LH2_Sphaeroides.pdb #1.1/B BCL 101 CED LH2_Sphaeroides.pdb #1.1/K ALA 36 N -0.125 3.645
LH2_Sphaeroides.pdb #1.2/B BCL 101 CBC LH2_Sphaeroides.pdb #1.2/B VAL 34 CG1 -0.139 3.899
LH2_Sphaeroides.pdb #1.1/B BCL 101 CBC LH2_Sphaeroides.pdb #1.1/B VAL 34 CG1 -0.139 3.899
LH2_Sphaeroides.pdb #1.2/B BCL 101 O1A LH2_Sphaeroides.pdb #1.2/B SER 27 CB -0.139 3.439
LH2_Sphaeroides.pdb #1.1/B BCL 101 O1A LH2_Sphaeroides.pdb #1.1/B SER 27 CB -0.139 3.439
LH2_Sphaeroides.pdb #1.2/B BCL 101 CMD LH2_Sphaeroides.pdb #1.2/K ALA 43 CB -0.141 3.901
LH2_Sphaeroides.pdb #1.1/B BCL 101 CMD LH2_Sphaeroides.pdb #1.1/K ALA 43 CB -0.141 3.901
LH2_Sphaeroides.pdb #1.2/B BCL 101 OBB LH2_Sphaeroides.pdb #1.2/B TYR 45 CE1 -0.147 3.327
LH2_Sphaeroides.pdb #1.1/B BCL 101 OBB LH2_Sphaeroides.pdb #1.1/B TYR 45 CE1 -0.147 3.327
LH2_Sphaeroides.pdb #1.2/B BCL 101 CBB LH2_Sphaeroides.pdb #1.2/B TYR 45 OH -0.153 3.493
LH2_Sphaeroides.pdb #1.1/B BCL 101 CBB LH2_Sphaeroides.pdb #1.1/B TYR 45 OH -0.153 3.493
LH2_Sphaeroides.pdb #1.2/B BCL 101 NB LH2_Sphaeroides.pdb #1.2/B HIS 31 NE2 -0.160 3.040
LH2_Sphaeroides.pdb #1.1/B BCL 101 NB LH2_Sphaeroides.pdb #1.1/B HIS 31 NE2 -0.160 3.040
LH2_Sphaeroides.pdb #1.2/B BCL 101 CAB LH2_Sphaeroides.pdb #1.2/B TYR 45 OH -0.166 3.236
LH2_Sphaeroides.pdb #1.1/B BCL 101 CAB LH2_Sphaeroides.pdb #1.1/B TYR 45 OH -0.166 3.236
LH2_Sphaeroides.pdb #1.2/B BCL 101 CBC LH2_Sphaeroides.pdb #1.2/B VAL 34 CB -0.166 3.926
LH2_Sphaeroides.pdb #1.1/B BCL 101 CBC LH2_Sphaeroides.pdb #1.1/B VAL 34 CB -0.166 3.926
LH2_Sphaeroides.pdb #1.2/B BCL 101 CED LH2_Sphaeroides.pdb #1.2/K PHE 32 CE1 -0.172 3.812
LH2_Sphaeroides.pdb #1.1/B BCL 101 CED LH2_Sphaeroides.pdb #1.1/K PHE 32 CE1 -0.172 3.812
LH2_Sphaeroides.pdb #1.2/B BCL 101 CMD LH2_Sphaeroides.pdb #1.2/K HIS 40 CA -0.177 3.937
LH2_Sphaeroides.pdb #1.1/B BCL 101 CMD LH2_Sphaeroides.pdb #1.1/K HIS 40 CA -0.177 3.937
LH2_Sphaeroides.pdb #1.2/B BCL 101 CHC LH2_Sphaeroides.pdb #1.2/B HIS 31 CD2 -0.192 3.712
LH2_Sphaeroides.pdb #1.1/B BCL 101 CHC LH2_Sphaeroides.pdb #1.1/B HIS 31 CD2 -0.192 3.712
LH2_Sphaeroides.pdb #1.2/B BCL 101 CGA LH2_Sphaeroides.pdb #1.2/B SER 27 CB -0.194 3.684
LH2_Sphaeroides.pdb #1.1/B BCL 101 CGA LH2_Sphaeroides.pdb #1.1/B SER 27 CB -0.194 3.684
LH2_Sphaeroides.pdb #1.2/B BCL 101 CAC LH2_Sphaeroides.pdb #1.2/B TRP 40 CH2 -0.197 3.837
LH2_Sphaeroides.pdb #1.1/B BCL 101 CAC LH2_Sphaeroides.pdb #1.1/B TRP 40 CH2 -0.197 3.837
LH2_Sphaeroides.pdb #1.2/B BCL 101 CED LH2_Sphaeroides.pdb #1.2/K ALA 36 CA -0.197 3.957
LH2_Sphaeroides.pdb #1.1/B BCL 101 CED LH2_Sphaeroides.pdb #1.1/K ALA 36 CA -0.197 3.957
LH2_Sphaeroides.pdb #1.2/B BCL 101 C14 LH2_Sphaeroides.pdb #1.2/B SER 21 CA -0.201 3.961
LH2_Sphaeroides.pdb #1.1/B BCL 101 C14 LH2_Sphaeroides.pdb #1.1/B SER 21 CA -0.201 3.961
LH2_Sphaeroides.pdb #1.2/B BCL 101 C17 LH2_Sphaeroides.pdb #1.2/B LEU 20 CD1 -0.237 3.997
LH2_Sphaeroides.pdb #1.1/B BCL 101 C17 LH2_Sphaeroides.pdb #1.1/B LEU 20 CD1 -0.237 3.997
LH2_Sphaeroides.pdb #1.2/B BCL 101 CED LH2_Sphaeroides.pdb #1.2/K PHE 32 O -0.247 3.547
LH2_Sphaeroides.pdb #1.1/B BCL 101 CED LH2_Sphaeroides.pdb #1.1/K PHE 32 O -0.247 3.547
LH2_Sphaeroides.pdb #1.2/B BCL 101 C2 LH2_Sphaeroides.pdb #1.2/B VAL 24 CG2 -0.249 3.889
LH2_Sphaeroides.pdb #1.1/B BCL 101 C2 LH2_Sphaeroides.pdb #1.1/B VAL 24 CG2 -0.249 3.889
LH2_Sphaeroides.pdb #1.2/B BCL 101 CED LH2_Sphaeroides.pdb #1.2/K ALA 36 CB -0.253 4.013
LH2_Sphaeroides.pdb #1.1/B BCL 101 CED LH2_Sphaeroides.pdb #1.1/K ALA 36 CB -0.253 4.013
LH2_Sphaeroides.pdb #1.2/B BCL 101 C1 LH2_Sphaeroides.pdb #1.2/B VAL 24 CA -0.257 4.017
LH2_Sphaeroides.pdb #1.1/B BCL 101 C1 LH2_Sphaeroides.pdb #1.1/B VAL 24 CA -0.257 4.017
LH2_Sphaeroides.pdb #1.2/B BCL 101 CAC LH2_Sphaeroides.pdb #1.2/B VAL 34 CG1 -0.269 4.029
LH2_Sphaeroides.pdb #1.1/B BCL 101 CAC LH2_Sphaeroides.pdb #1.1/B VAL 34 CG1 -0.269 4.029
LH2_Sphaeroides.pdb #1.2/B BCL 101 CED LH2_Sphaeroides.pdb #1.2/K PHE 32 CD2 -0.271 3.911
LH2_Sphaeroides.pdb #1.1/B BCL 101 CED LH2_Sphaeroides.pdb #1.1/K PHE 32 CD2 -0.271 3.911
LH2_Sphaeroides.pdb #1.2/B BCL 101 C5 LH2_Sphaeroides.pdb #1.2/B VAL 24 CG1 -0.284 4.044
LH2_Sphaeroides.pdb #1.1/B BCL 101 C5 LH2_Sphaeroides.pdb #1.1/B VAL 24 CG1 -0.284 4.044
LH2_Sphaeroides.pdb #1.2/B BCL 101 CBC LH2_Sphaeroides.pdb #1.2/B LEU 41 CD2 -0.287 4.047
LH2_Sphaeroides.pdb #1.1/B BCL 101 CBC LH2_Sphaeroides.pdb #1.1/B LEU 41 CD2 -0.287 4.047
LH2_Sphaeroides.pdb #1.2/B BCL 101 C1 LH2_Sphaeroides.pdb #1.2/B VAL 24 CG1 -0.287 4.047
LH2_Sphaeroides.pdb #1.1/B BCL 101 C1 LH2_Sphaeroides.pdb #1.1/B VAL 24 CG1 -0.287 4.047
LH2_Sphaeroides.pdb #1.2/B BCL 101 C2D LH2_Sphaeroides.pdb #1.2/K ALA 39 CB -0.289 3.779
LH2_Sphaeroides.pdb #1.1/B BCL 101 C2D LH2_Sphaeroides.pdb #1.1/K ALA 39 CB -0.289 3.779
LH2_Sphaeroides.pdb #1.2/B BCL 101 C4B LH2_Sphaeroides.pdb #1.2/B HIS 31 CD2 -0.294 3.664
LH2_Sphaeroides.pdb #1.1/B BCL 101 C4B LH2_Sphaeroides.pdb #1.1/B HIS 31 CD2 -0.294 3.664
LH2_Sphaeroides.pdb #1.2/B BCL 101 OBB LH2_Sphaeroides.pdb #1.2/B TYR 45 CZ -0.303 3.333
LH2_Sphaeroides.pdb #1.1/B BCL 101 OBB LH2_Sphaeroides.pdb #1.1/B TYR 45 CZ -0.303 3.333
LH2_Sphaeroides.pdb #1.2/B BCL 101 C1 LH2_Sphaeroides.pdb #1.2/B SER 27 OG -0.305 3.645
LH2_Sphaeroides.pdb #1.1/B BCL 101 C1 LH2_Sphaeroides.pdb #1.1/B SER 27 OG -0.305 3.645
LH2_Sphaeroides.pdb #1.2/B BCL 101 CMD LH2_Sphaeroides.pdb #1.2/K ALA 39 C -0.312 3.802
LH2_Sphaeroides.pdb #1.1/B BCL 101 CMD LH2_Sphaeroides.pdb #1.1/K ALA 39 C -0.312 3.802
LH2_Sphaeroides.pdb #1.2/B BCL 101 C1C LH2_Sphaeroides.pdb #1.2/B HIS 31 CD2 -0.313 3.683
LH2_Sphaeroides.pdb #1.1/B BCL 101 C1C LH2_Sphaeroides.pdb #1.1/B HIS 31 CD2 -0.313 3.683
LH2_Sphaeroides.pdb #1.2/B BCL 101 CGD LH2_Sphaeroides.pdb #1.2/K ALA 36 CA -0.322 3.812
LH2_Sphaeroides.pdb #1.1/B BCL 101 CGD LH2_Sphaeroides.pdb #1.1/K ALA 36 CA -0.322 3.812
LH2_Sphaeroides.pdb #1.2/B BCL 101 C14 LH2_Sphaeroides.pdb #1.2/B VAL 24 CB -0.333 4.093
LH2_Sphaeroides.pdb #1.1/B BCL 101 C14 LH2_Sphaeroides.pdb #1.1/B VAL 24 CB -0.333 4.093
LH2_Sphaeroides.pdb #1.2/B BCL 101 ND LH2_Sphaeroides.pdb #1.2/B HIS 31 CE1 -0.335 3.735
LH2_Sphaeroides.pdb #1.1/B BCL 101 ND LH2_Sphaeroides.pdb #1.1/B HIS 31 CE1 -0.335 3.735
LH2_Sphaeroides.pdb #1.2/B BCL 101 NC LH2_Sphaeroides.pdb #1.2/B HIS 31 NE2 -0.335 3.215
LH2_Sphaeroides.pdb #1.1/B BCL 101 NC LH2_Sphaeroides.pdb #1.1/B HIS 31 NE2 -0.335 3.215
LH2_Sphaeroides.pdb #1.2/B BCL 101 CGA LH2_Sphaeroides.pdb #1.2/B SER 27 OG -0.346 3.416
LH2_Sphaeroides.pdb #1.1/B BCL 101 CGA LH2_Sphaeroides.pdb #1.1/B SER 27 OG -0.346 3.416
LH2_Sphaeroides.pdb #1.2/B BCL 101 CED LH2_Sphaeroides.pdb #1.2/K PHE 32 CD1 -0.347 3.987
LH2_Sphaeroides.pdb #1.1/B BCL 101 CED LH2_Sphaeroides.pdb #1.1/K PHE 32 CD1 -0.347 3.987
LH2_Sphaeroides.pdb #1.2/B BCL 101 O1D LH2_Sphaeroides.pdb #1.2/K ALA 36 CA -0.350 3.650
LH2_Sphaeroides.pdb #1.1/B BCL 101 O1D LH2_Sphaeroides.pdb #1.1/K ALA 36 CA -0.350 3.650
LH2_Sphaeroides.pdb #1.2/B BCL 101 O2D LH2_Sphaeroides.pdb #1.2/K PHE 32 CZ -0.350 3.570
LH2_Sphaeroides.pdb #1.1/B BCL 101 O2D LH2_Sphaeroides.pdb #1.1/K PHE 32 CZ -0.350 3.570
LH2_Sphaeroides.pdb #1.2/B BCL 101 CMD LH2_Sphaeroides.pdb #1.2/K ALA 39 O -0.351 3.651
LH2_Sphaeroides.pdb #1.1/B BCL 101 CMD LH2_Sphaeroides.pdb #1.1/K ALA 39 O -0.351 3.651
LH2_Sphaeroides.pdb #1.2/B BCL 101 O1D LH2_Sphaeroides.pdb #1.2/K MET 35 CG -0.352 3.652
LH2_Sphaeroides.pdb #1.1/B BCL 101 O1D LH2_Sphaeroides.pdb #1.1/K MET 35 CG -0.352 3.652
LH2_Sphaeroides.pdb #1.2/B BCL 101 C1A LH2_Sphaeroides.pdb #1.2/B HIS 31 CE1 -0.365 3.735
LH2_Sphaeroides.pdb #1.1/B BCL 101 C1A LH2_Sphaeroides.pdb #1.1/B HIS 31 CE1 -0.365 3.735
LH2_Sphaeroides.pdb #1.2/B BCL 101 CMD LH2_Sphaeroides.pdb #1.2/K ALA 39 CB -0.374 4.134
LH2_Sphaeroides.pdb #1.1/B BCL 101 CMD LH2_Sphaeroides.pdb #1.1/K ALA 39 CB -0.374 4.134
LH2_Sphaeroides.pdb #1.2/B BCL 101 CMD LH2_Sphaeroides.pdb #1.2/K HIS 40 N -0.377 3.897
LH2_Sphaeroides.pdb #1.1/B BCL 101 CMD LH2_Sphaeroides.pdb #1.1/K HIS 40 N -0.377 3.897
152 contacts
> hide sel atoms
> select #1 &~/A-B:11-38/J-K:20-47/A:101/K:101
17132 atoms, 17066 bonds, 288 pseudobonds, 2140 residues, 7 models selected
> hide sel atoms
> select #1/A:101/K:101
264 atoms, 280 bonds, 16 pseudobonds, 4 residues, 4 models selected
> contacts sel restrict "#1/A-B/J-K &protein" resSeparation 5
> ignoreHiddenModels true select true makePseudobonds false reveal true log
> true
Allowed overlap: -0.4
H-bond overlap reduction: 0.4
Ignore contacts between atoms separated by 4 bonds or less
Ignore contacts between atoms in residues less than 5 apart in sequence
Detect intra-residue contacts: False
Detect intra-molecule contacts: True
342 contacts
atom1 atom2 overlap distance
LH2_Sphaeroides.pdb #1.2/K BCL 101 CMD LH2_Sphaeroides.pdb #1.2/B HIS 31 CE1 0.497 3.143
LH2_Sphaeroides.pdb #1.1/K BCL 101 CMD LH2_Sphaeroides.pdb #1.1/B HIS 31 CE1 0.497 3.143
LH2_Sphaeroides.pdb #1.2/K BCL 101 ND LH2_Sphaeroides.pdb #1.2/K HIS 40 NE2 0.350 2.930
LH2_Sphaeroides.pdb #1.1/K BCL 101 ND LH2_Sphaeroides.pdb #1.1/K HIS 40 NE2 0.350 2.930
LH2_Sphaeroides.pdb #1.2/K BCL 101 ND LH2_Sphaeroides.pdb #1.2/K HIS 40 CE1 0.329 3.071
LH2_Sphaeroides.pdb #1.1/K BCL 101 ND LH2_Sphaeroides.pdb #1.1/K HIS 40 CE1 0.329 3.071
LH2_Sphaeroides.pdb #1.2/A BCL 101 MG LH2_Sphaeroides.pdb #1.2/A HIS 31 NE2 0.309 1.901
LH2_Sphaeroides.pdb #1.1/A BCL 101 MG LH2_Sphaeroides.pdb #1.1/A HIS 31 NE2 0.309 1.901
LH2_Sphaeroides.pdb #1.2/K BCL 101 MG LH2_Sphaeroides.pdb #1.2/K HIS 40 NE2 0.309 1.901
LH2_Sphaeroides.pdb #1.1/K BCL 101 MG LH2_Sphaeroides.pdb #1.1/K HIS 40 NE2 0.309 1.901
LH2_Sphaeroides.pdb #1.2/A BCL 101 C4 LH2_Sphaeroides.pdb #1.2/A VAL 28 CG2 0.296 3.464
LH2_Sphaeroides.pdb #1.1/A BCL 101 C4 LH2_Sphaeroides.pdb #1.1/A VAL 28 CG2 0.296 3.464
LH2_Sphaeroides.pdb #1.2/A BCL 101 NA LH2_Sphaeroides.pdb #1.2/A HIS 31 NE2 0.244 3.036
LH2_Sphaeroides.pdb #1.1/A BCL 101 NA LH2_Sphaeroides.pdb #1.1/A HIS 31 NE2 0.244 3.036
LH2_Sphaeroides.pdb #1.2/K BCL 101 CMD LH2_Sphaeroides.pdb #1.2/B HIS 31 NE2 0.206 3.314
LH2_Sphaeroides.pdb #1.1/K BCL 101 CMD LH2_Sphaeroides.pdb #1.1/B HIS 31 NE2 0.206 3.314
LH2_Sphaeroides.pdb #1.2/A BCL 101 C19 LH2_Sphaeroides.pdb #1.2/B VAL 10 CG1 0.175 3.585
LH2_Sphaeroides.pdb #1.1/A BCL 101 C19 LH2_Sphaeroides.pdb #1.1/B VAL 10 CG1 0.175 3.585
LH2_Sphaeroides.pdb #1.2/A BCL 101 ND LH2_Sphaeroides.pdb #1.2/A HIS 31 NE2 0.163 3.117
LH2_Sphaeroides.pdb #1.1/A BCL 101 ND LH2_Sphaeroides.pdb #1.1/A HIS 31 NE2 0.163 3.117
LH2_Sphaeroides.pdb #1.2/K BCL 101 C14 LH2_Sphaeroides.pdb #1.2/J VAL 31 CG1 0.161 3.599
LH2_Sphaeroides.pdb #1.1/K BCL 101 C14 LH2_Sphaeroides.pdb #1.1/J VAL 31 CG1 0.161 3.599
LH2_Sphaeroides.pdb #1.2/A BCL 101 C5 LH2_Sphaeroides.pdb #1.2/B ALA 26 CB 0.157 3.603
LH2_Sphaeroides.pdb #1.1/A BCL 101 C5 LH2_Sphaeroides.pdb #1.1/B ALA 26 CB 0.157 3.603
LH2_Sphaeroides.pdb #1.2/A BCL 101 C4 LH2_Sphaeroides.pdb #1.2/B ALA 26 CB 0.152 3.608
LH2_Sphaeroides.pdb #1.1/A BCL 101 C4 LH2_Sphaeroides.pdb #1.1/B ALA 26 CB 0.152 3.608
LH2_Sphaeroides.pdb #1.2/A BCL 101 C1 LH2_Sphaeroides.pdb #1.2/A SER 27 CB 0.136 3.624
LH2_Sphaeroides.pdb #1.1/A BCL 101 C1 LH2_Sphaeroides.pdb #1.1/A SER 27 CB 0.136 3.624
LH2_Sphaeroides.pdb #1.2/K BCL 101 NA LH2_Sphaeroides.pdb #1.2/K HIS 40 NE2 0.133 3.147
LH2_Sphaeroides.pdb #1.1/K BCL 101 NA LH2_Sphaeroides.pdb #1.1/K HIS 40 NE2 0.133 3.147
LH2_Sphaeroides.pdb #1.2/A BCL 101 C9 LH2_Sphaeroides.pdb #1.2/B PHE 19 CZ 0.127 3.513
LH2_Sphaeroides.pdb #1.1/A BCL 101 C9 LH2_Sphaeroides.pdb #1.1/B PHE 19 CZ 0.127 3.513
LH2_Sphaeroides.pdb #1.2/K BCL 101 CED LH2_Sphaeroides.pdb #1.2/B ALA 23 O 0.124 3.176
LH2_Sphaeroides.pdb #1.1/K BCL 101 CED LH2_Sphaeroides.pdb #1.1/B ALA 23 O 0.124 3.176
LH2_Sphaeroides.pdb #1.2/A BCL 101 NA LH2_Sphaeroides.pdb #1.2/A HIS 31 CE1 0.121 3.279
LH2_Sphaeroides.pdb #1.1/A BCL 101 NA LH2_Sphaeroides.pdb #1.1/A HIS 31 CE1 0.121 3.279
LH2_Sphaeroides.pdb #1.2/A BCL 101 C14 LH2_Sphaeroides.pdb #1.2/B ALA 22 CB 0.118 3.642
LH2_Sphaeroides.pdb #1.1/A BCL 101 C14 LH2_Sphaeroides.pdb #1.1/B ALA 22 CB 0.118 3.642
LH2_Sphaeroides.pdb #1.2/A BCL 101 C3D LH2_Sphaeroides.pdb #1.2/J ALA 39 CB 0.102 3.388
LH2_Sphaeroides.pdb #1.1/A BCL 101 C3D LH2_Sphaeroides.pdb #1.1/J ALA 39 CB 0.102 3.388
LH2_Sphaeroides.pdb #1.2/A BCL 101 CED LH2_Sphaeroides.pdb #1.2/J MET 35 CG 0.098 3.662
LH2_Sphaeroides.pdb #1.1/A BCL 101 CED LH2_Sphaeroides.pdb #1.1/J MET 35 CG 0.098 3.662
LH2_Sphaeroides.pdb #1.2/K BCL 101 CMC LH2_Sphaeroides.pdb #1.2/A TYR 45 CE1 0.093 3.547
LH2_Sphaeroides.pdb #1.1/K BCL 101 CMC LH2_Sphaeroides.pdb #1.1/A TYR 45 CE1 0.093 3.547
LH2_Sphaeroides.pdb #1.2/K BCL 101 CMD LH2_Sphaeroides.pdb #1.2/B HIS 31 ND1 0.089 3.431
LH2_Sphaeroides.pdb #1.1/K BCL 101 CMD LH2_Sphaeroides.pdb #1.1/B HIS 31 ND1 0.089 3.431
LH2_Sphaeroides.pdb #1.2/A BCL 101 C9 LH2_Sphaeroides.pdb #1.2/B PHE 19 CE2 0.081 3.559
LH2_Sphaeroides.pdb #1.1/A BCL 101 C9 LH2_Sphaeroides.pdb #1.1/B PHE 19 CE2 0.081 3.559
LH2_Sphaeroides.pdb #1.2/K BCL 101 CMC LH2_Sphaeroides.pdb #1.2/A TYR 45 CD1 0.071 3.569
LH2_Sphaeroides.pdb #1.1/K BCL 101 CMC LH2_Sphaeroides.pdb #1.1/A TYR 45 CD1 0.071 3.569
LH2_Sphaeroides.pdb #1.2/A BCL 101 C11 LH2_Sphaeroides.pdb #1.2/B ALA 22 CB 0.068 3.692
LH2_Sphaeroides.pdb #1.1/A BCL 101 C11 LH2_Sphaeroides.pdb #1.1/B ALA 22 CB 0.068 3.692
LH2_Sphaeroides.pdb #1.2/K BCL 101 C1 LH2_Sphaeroides.pdb #1.2/K GLY 33 CA 0.064 3.696
LH2_Sphaeroides.pdb #1.1/K BCL 101 C1 LH2_Sphaeroides.pdb #1.1/K GLY 33 CA 0.064 3.696
LH2_Sphaeroides.pdb #1.2/A BCL 101 CMC LH2_Sphaeroides.pdb #1.2/A LEU 41 CD1 0.056 3.704
LH2_Sphaeroides.pdb #1.1/A BCL 101 CMC LH2_Sphaeroides.pdb #1.1/A LEU 41 CD1 0.056 3.704
LH2_Sphaeroides.pdb #1.2/K BCL 101 C1D LH2_Sphaeroides.pdb #1.2/B ILE 30 CG2 0.055 3.435
LH2_Sphaeroides.pdb #1.1/K BCL 101 C1D LH2_Sphaeroides.pdb #1.1/B ILE 30 CG2 0.055 3.435
LH2_Sphaeroides.pdb #1.2/K BCL 101 O1D LH2_Sphaeroides.pdb #1.2/B ILE 30 CD1 0.049 3.251
LH2_Sphaeroides.pdb #1.1/K BCL 101 O1D LH2_Sphaeroides.pdb #1.1/B ILE 30 CD1 0.049 3.251
LH2_Sphaeroides.pdb #1.2/A BCL 101 C14 LH2_Sphaeroides.pdb #1.2/A VAL 24 CG2 0.049 3.711
LH2_Sphaeroides.pdb #1.1/A BCL 101 C14 LH2_Sphaeroides.pdb #1.1/A VAL 24 CG2 0.049 3.711
LH2_Sphaeroides.pdb #1.2/K BCL 101 NA LH2_Sphaeroides.pdb #1.2/K HIS 40 CE1 0.044 3.356
LH2_Sphaeroides.pdb #1.1/K BCL 101 NA LH2_Sphaeroides.pdb #1.1/K HIS 40 CE1 0.044 3.356
LH2_Sphaeroides.pdb #1.2/K BCL 101 CED LH2_Sphaeroides.pdb #1.2/K PHE 32 CZ 0.042 3.598
LH2_Sphaeroides.pdb #1.1/K BCL 101 CED LH2_Sphaeroides.pdb #1.1/K PHE 32 CZ 0.042 3.598
LH2_Sphaeroides.pdb #1.2/A BCL 101 NC LH2_Sphaeroides.pdb #1.2/A HIS 31 CD2 0.039 3.361
LH2_Sphaeroides.pdb #1.1/A BCL 101 NC LH2_Sphaeroides.pdb #1.1/A HIS 31 CD2 0.039 3.361
LH2_Sphaeroides.pdb #1.2/K BCL 101 C20 LH2_Sphaeroides.pdb #1.2/A VAL 24 CG2 0.026 3.734
LH2_Sphaeroides.pdb #1.1/K BCL 101 C20 LH2_Sphaeroides.pdb #1.1/A VAL 24 CG2 0.026 3.734
LH2_Sphaeroides.pdb #1.2/A BCL 101 C2 LH2_Sphaeroides.pdb #1.2/A VAL 24 CG1 0.019 3.621
LH2_Sphaeroides.pdb #1.1/A BCL 101 C2 LH2_Sphaeroides.pdb #1.1/A VAL 24 CG1 0.019 3.621
LH2_Sphaeroides.pdb #1.2/K BCL 101 C2 LH2_Sphaeroides.pdb #1.2/K THR 29 CG2 0.019 3.621
LH2_Sphaeroides.pdb #1.1/K BCL 101 C2 LH2_Sphaeroides.pdb #1.1/K THR 29 CG2 0.019 3.621
LH2_Sphaeroides.pdb #1.2/A BCL 101 CAA LH2_Sphaeroides.pdb #1.2/A SER 27 OG 0.014 3.326
LH2_Sphaeroides.pdb #1.1/A BCL 101 CAA LH2_Sphaeroides.pdb #1.1/A SER 27 OG 0.014 3.326
LH2_Sphaeroides.pdb #1.2/K BCL 101 C4D LH2_Sphaeroides.pdb #1.2/K HIS 40 CE1 0.007 3.363
LH2_Sphaeroides.pdb #1.1/K BCL 101 C4D LH2_Sphaeroides.pdb #1.1/K HIS 40 CE1 0.007 3.363
LH2_Sphaeroides.pdb #1.2/A BCL 101 CAD LH2_Sphaeroides.pdb #1.2/J ALA 39 CB -0.003 3.493
LH2_Sphaeroides.pdb #1.1/A BCL 101 CAD LH2_Sphaeroides.pdb #1.1/J ALA 39 CB -0.003 3.493
LH2_Sphaeroides.pdb #1.2/K BCL 101 CHD LH2_Sphaeroides.pdb #1.2/B ILE 30 CG2 -0.009 3.649
LH2_Sphaeroides.pdb #1.1/K BCL 101 CHD LH2_Sphaeroides.pdb #1.1/B ILE 30 CG2 -0.009 3.649
LH2_Sphaeroides.pdb #1.2/K BCL 101 OBD LH2_Sphaeroides.pdb #1.2/B SER 27 CB -0.010 3.310
LH2_Sphaeroides.pdb #1.1/K BCL 101 OBD LH2_Sphaeroides.pdb #1.1/B SER 27 CB -0.010 3.310
LH2_Sphaeroides.pdb #1.2/K BCL 101 CBC LH2_Sphaeroides.pdb #1.2/K TRP 49 CB -0.025 3.785
LH2_Sphaeroides.pdb #1.1/K BCL 101 CBC LH2_Sphaeroides.pdb #1.1/K TRP 49 CB -0.025 3.785
LH2_Sphaeroides.pdb #1.2/K BCL 101 CMC LH2_Sphaeroides.pdb #1.2/K TRP 49 NE1 -0.025 3.545
LH2_Sphaeroides.pdb #1.1/K BCL 101 CMC LH2_Sphaeroides.pdb #1.1/K TRP 49 NE1 -0.025 3.545
LH2_Sphaeroides.pdb #1.2/A BCL 101 CMA LH2_Sphaeroides.pdb #1.2/J MET 35 CE -0.027 3.787
LH2_Sphaeroides.pdb #1.1/A BCL 101 CMA LH2_Sphaeroides.pdb #1.1/J MET 35 CE -0.027 3.787
LH2_Sphaeroides.pdb #1.2/A BCL 101 C20 LH2_Sphaeroides.pdb #1.2/B TRP 7 CH2 -0.027 3.667
LH2_Sphaeroides.pdb #1.1/A BCL 101 C20 LH2_Sphaeroides.pdb #1.1/B TRP 7 CH2 -0.027 3.667
LH2_Sphaeroides.pdb #1.2/A BCL 101 CBB LH2_Sphaeroides.pdb #1.2/B ILE 30 CG2 -0.034 3.794
LH2_Sphaeroides.pdb #1.1/A BCL 101 CBB LH2_Sphaeroides.pdb #1.1/B ILE 30 CG2 -0.034 3.794
LH2_Sphaeroides.pdb #1.2/A BCL 101 CBC LH2_Sphaeroides.pdb #1.2/A HIS 31 CD2 -0.041 3.681
LH2_Sphaeroides.pdb #1.1/A BCL 101 CBC LH2_Sphaeroides.pdb #1.1/A HIS 31 CD2 -0.041 3.681
LH2_Sphaeroides.pdb #1.2/A BCL 101 OBD LH2_Sphaeroides.pdb #1.2/J HIS 40 CE1 -0.046 3.226
LH2_Sphaeroides.pdb #1.1/A BCL 101 OBD LH2_Sphaeroides.pdb #1.1/J HIS 40 CE1 -0.046 3.226
LH2_Sphaeroides.pdb #1.2/K BCL 101 CHC LH2_Sphaeroides.pdb #1.2/K TRP 49 CZ2 -0.046 3.566
LH2_Sphaeroides.pdb #1.1/K BCL 101 CHC LH2_Sphaeroides.pdb #1.1/K TRP 49 CZ2 -0.046 3.566
LH2_Sphaeroides.pdb #1.2/A BCL 101 O1D LH2_Sphaeroides.pdb #1.2/J ALA 39 CB -0.048 3.348
LH2_Sphaeroides.pdb #1.1/A BCL 101 O1D LH2_Sphaeroides.pdb #1.1/J ALA 39 CB -0.048 3.348
LH2_Sphaeroides.pdb #1.2/A BCL 101 NB LH2_Sphaeroides.pdb #1.2/A HIS 31 CD2 -0.050 3.450
LH2_Sphaeroides.pdb #1.1/A BCL 101 NB LH2_Sphaeroides.pdb #1.1/A HIS 31 CD2 -0.050 3.450
LH2_Sphaeroides.pdb #1.2/A BCL 101 C2C LH2_Sphaeroides.pdb #1.2/A LEU 41 CD1 -0.050 3.810
LH2_Sphaeroides.pdb #1.1/A BCL 101 C2C LH2_Sphaeroides.pdb #1.1/A LEU 41 CD1 -0.050 3.810
LH2_Sphaeroides.pdb #1.2/A BCL 101 CED LH2_Sphaeroides.pdb #1.2/J PHE 32 CZ -0.051 3.691
LH2_Sphaeroides.pdb #1.1/A BCL 101 CED LH2_Sphaeroides.pdb #1.1/J PHE 32 CZ -0.051 3.691
LH2_Sphaeroides.pdb #1.2/K BCL 101 OBB LH2_Sphaeroides.pdb #1.2/A TYR 44 CE2 -0.056 3.236
LH2_Sphaeroides.pdb #1.1/K BCL 101 OBB LH2_Sphaeroides.pdb #1.1/A TYR 44 CE2 -0.056 3.236
LH2_Sphaeroides.pdb #1.2/K BCL 101 C1 LH2_Sphaeroides.pdb #1.2/K THR 29 CG2 -0.056 3.816
LH2_Sphaeroides.pdb #1.1/K BCL 101 C1 LH2_Sphaeroides.pdb #1.1/K THR 29 CG2 -0.056 3.816
LH2_Sphaeroides.pdb #1.2/A BCL 101 C3 LH2_Sphaeroides.pdb #1.2/A VAL 24 CG1 -0.059 3.549
LH2_Sphaeroides.pdb #1.1/A BCL 101 C3 LH2_Sphaeroides.pdb #1.1/A VAL 24 CG1 -0.059 3.549
LH2_Sphaeroides.pdb #1.2/K BCL 101 C2C LH2_Sphaeroides.pdb #1.2/K TRP 49 CE2 -0.067 3.557
LH2_Sphaeroides.pdb #1.1/K BCL 101 C2C LH2_Sphaeroides.pdb #1.1/K TRP 49 CE2 -0.067 3.557
LH2_Sphaeroides.pdb #1.2/A BCL 101 OBB LH2_Sphaeroides.pdb #1.2/A TYR 45 OH -0.070 2.550
LH2_Sphaeroides.pdb #1.1/A BCL 101 OBB LH2_Sphaeroides.pdb #1.1/A TYR 45 OH -0.070 2.550
LH2_Sphaeroides.pdb #1.2/A BCL 101 C13 LH2_Sphaeroides.pdb #1.2/B ALA 22 CB -0.072 3.832
LH2_Sphaeroides.pdb #1.1/A BCL 101 C13 LH2_Sphaeroides.pdb #1.1/B ALA 22 CB -0.072 3.832
LH2_Sphaeroides.pdb #1.2/K BCL 101 O2D LH2_Sphaeroides.pdb #1.2/K PHE 32 CZ -0.072 3.292
LH2_Sphaeroides.pdb #1.1/K BCL 101 O2D LH2_Sphaeroides.pdb #1.1/K PHE 32 CZ -0.072 3.292
LH2_Sphaeroides.pdb #1.2/K BCL 101 C2D LH2_Sphaeroides.pdb #1.2/B ILE 30 CG2 -0.075 3.565
LH2_Sphaeroides.pdb #1.1/K BCL 101 C2D LH2_Sphaeroides.pdb #1.1/B ILE 30 CG2 -0.075 3.565
LH2_Sphaeroides.pdb #1.2/A BCL 101 CED LH2_Sphaeroides.pdb #1.2/J MET 35 CB -0.080 3.840
LH2_Sphaeroides.pdb #1.1/A BCL 101 CED LH2_Sphaeroides.pdb #1.1/J MET 35 CB -0.080 3.840
LH2_Sphaeroides.pdb #1.2/A BCL 101 OBD LH2_Sphaeroides.pdb #1.2/J ALA 36 CB -0.083 3.383
LH2_Sphaeroides.pdb #1.1/A BCL 101 OBD LH2_Sphaeroides.pdb #1.1/J ALA 36 CB -0.083 3.383
LH2_Sphaeroides.pdb #1.2/K BCL 101 CMD LH2_Sphaeroides.pdb #1.2/B HIS 31 CD2 -0.085 3.725
LH2_Sphaeroides.pdb #1.1/K BCL 101 CMD LH2_Sphaeroides.pdb #1.1/B HIS 31 CD2 -0.085 3.725
LH2_Sphaeroides.pdb #1.2/A BCL 101 CED LH2_Sphaeroides.pdb #1.2/J PHE 32 CE2 -0.085 3.725
LH2_Sphaeroides.pdb #1.1/A BCL 101 CED LH2_Sphaeroides.pdb #1.1/J PHE 32 CE2 -0.085 3.725
LH2_Sphaeroides.pdb #1.2/K BCL 101 OBB LH2_Sphaeroides.pdb #1.2/A TYR 44 OH -0.086 2.566
LH2_Sphaeroides.pdb #1.1/K BCL 101 OBB LH2_Sphaeroides.pdb #1.1/A TYR 44 OH -0.086 2.566
LH2_Sphaeroides.pdb #1.2/K BCL 101 C4 LH2_Sphaeroides.pdb #1.2/K GLY 33 CA -0.089 3.849
LH2_Sphaeroides.pdb #1.1/K BCL 101 C4 LH2_Sphaeroides.pdb #1.1/K GLY 33 CA -0.089 3.849
LH2_Sphaeroides.pdb #1.2/K BCL 101 C2C LH2_Sphaeroides.pdb #1.2/K TRP 49 CZ2 -0.090 3.730
LH2_Sphaeroides.pdb #1.1/K BCL 101 C2C LH2_Sphaeroides.pdb #1.1/K TRP 49 CZ2 -0.090 3.730
LH2_Sphaeroides.pdb #1.2/A BCL 101 CED LH2_Sphaeroides.pdb #1.2/J MET 35 SD -0.094 3.744
LH2_Sphaeroides.pdb #1.1/A BCL 101 CED LH2_Sphaeroides.pdb #1.1/J MET 35 SD -0.094 3.744
LH2_Sphaeroides.pdb #1.2/K BCL 101 CED LH2_Sphaeroides.pdb #1.2/B SER 27 CB -0.098 3.858
LH2_Sphaeroides.pdb #1.1/K BCL 101 CED LH2_Sphaeroides.pdb #1.1/B SER 27 CB -0.098 3.858
LH2_Sphaeroides.pdb #1.2/A BCL 101 CMD LH2_Sphaeroides.pdb #1.2/J HIS 40 ND1 -0.104 3.624
LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD LH2_Sphaeroides.pdb #1.1/J HIS 40 ND1 -0.104 3.624
LH2_Sphaeroides.pdb #1.2/K BCL 101 O1A LH2_Sphaeroides.pdb #1.2/K PHE 32 CD1 -0.106 3.286
LH2_Sphaeroides.pdb #1.1/K BCL 101 O1A LH2_Sphaeroides.pdb #1.1/K PHE 32 CD1 -0.106 3.286
LH2_Sphaeroides.pdb #1.2/A BCL 101 C18 LH2_Sphaeroides.pdb #1.2/B GLY 15 CA -0.106 3.866
LH2_Sphaeroides.pdb #1.1/A BCL 101 C18 LH2_Sphaeroides.pdb #1.1/B GLY 15 CA -0.106 3.866
LH2_Sphaeroides.pdb #1.2/K BCL 101 O1A LH2_Sphaeroides.pdb #1.2/K GLY 33 CA -0.110 3.410
LH2_Sphaeroides.pdb #1.1/K BCL 101 O1A LH2_Sphaeroides.pdb #1.1/K GLY 33 CA -0.110 3.410
LH2_Sphaeroides.pdb #1.2/A BCL 101 C4 LH2_Sphaeroides.pdb #1.2/A VAL 24 CG1 -0.115 3.875
LH2_Sphaeroides.pdb #1.1/A BCL 101 C4 LH2_Sphaeroides.pdb #1.1/A VAL 24 CG1 -0.115 3.875
LH2_Sphaeroides.pdb #1.2/A BCL 101 OBD LH2_Sphaeroides.pdb #1.2/J ALA 36 CA -0.115 3.415
LH2_Sphaeroides.pdb #1.1/A BCL 101 OBD LH2_Sphaeroides.pdb #1.1/J ALA 36 CA -0.115 3.415
LH2_Sphaeroides.pdb #1.2/A BCL 101 CMD LH2_Sphaeroides.pdb #1.2/J HIS 40 CE1 -0.117 3.757
LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD LH2_Sphaeroides.pdb #1.1/J HIS 40 CE1 -0.117 3.757
LH2_Sphaeroides.pdb #1.2/A BCL 101 CBC LH2_Sphaeroides.pdb #1.2/A VAL 34 CG1 -0.120 3.880
LH2_Sphaeroides.pdb #1.1/A BCL 101 CBC LH2_Sphaeroides.pdb #1.1/A VAL 34 CG1 -0.120 3.880
LH2_Sphaeroides.pdb #1.2/A BCL 101 CMD LH2_Sphaeroides.pdb #1.2/J ALA 43 CB -0.123 3.883
LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD LH2_Sphaeroides.pdb #1.1/J ALA 43 CB -0.123 3.883
LH2_Sphaeroides.pdb #1.2/A BCL 101 C19 LH2_Sphaeroides.pdb #1.2/B ILE 6 CD1 -0.126 3.886
LH2_Sphaeroides.pdb #1.1/A BCL 101 C19 LH2_Sphaeroides.pdb #1.1/B ILE 6 CD1 -0.126 3.886
LH2_Sphaeroides.pdb #1.2/A BCL 101 C19 LH2_Sphaeroides.pdb #1.2/B GLY 15 CA -0.131 3.891
LH2_Sphaeroides.pdb #1.1/A BCL 101 C19 LH2_Sphaeroides.pdb #1.1/B GLY 15 CA -0.131 3.891
LH2_Sphaeroides.pdb #1.2/A BCL 101 CED LH2_Sphaeroides.pdb #1.2/J ALA 36 N -0.141 3.661
LH2_Sphaeroides.pdb #1.1/A BCL 101 CED LH2_Sphaeroides.pdb #1.1/J ALA 36 N -0.141 3.661
LH2_Sphaeroides.pdb #1.2/A BCL 101 CBB LH2_Sphaeroides.pdb #1.2/A TYR 45 OH -0.145 3.485
LH2_Sphaeroides.pdb #1.1/A BCL 101 CBB LH2_Sphaeroides.pdb #1.1/A TYR 45 OH -0.145 3.485
LH2_Sphaeroides.pdb #1.2/A BCL 101 O1A LH2_Sphaeroides.pdb #1.2/A SER 27 CB -0.146 3.446
LH2_Sphaeroides.pdb #1.1/A BCL 101 O1A LH2_Sphaeroides.pdb #1.1/A SER 27 CB -0.146 3.446
LH2_Sphaeroides.pdb #1.2/A BCL 101 C9 LH2_Sphaeroides.pdb #1.2/B ALA 23 CB -0.146 3.906
LH2_Sphaeroides.pdb #1.1/A BCL 101 C9 LH2_Sphaeroides.pdb #1.1/B ALA 23 CB -0.146 3.906
LH2_Sphaeroides.pdb #1.2/A BCL 101 OBB LH2_Sphaeroides.pdb #1.2/A TYR 45 CE1 -0.148 3.328
LH2_Sphaeroides.pdb #1.1/A BCL 101 OBB LH2_Sphaeroides.pdb #1.1/A TYR 45 CE1 -0.148 3.328
LH2_Sphaeroides.pdb #1.2/A BCL 101 CMD LH2_Sphaeroides.pdb #1.2/J HIS 40 CA -0.157 3.917
LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD LH2_Sphaeroides.pdb #1.1/J HIS 40 CA -0.157 3.917
LH2_Sphaeroides.pdb #1.2/A BCL 101 NB LH2_Sphaeroides.pdb #1.2/A HIS 31 NE2 -0.157 3.037
LH2_Sphaeroides.pdb #1.1/A BCL 101 NB LH2_Sphaeroides.pdb #1.1/A HIS 31 NE2 -0.157 3.037
LH2_Sphaeroides.pdb #1.2/K BCL 101 CMD LH2_Sphaeroides.pdb #1.2/B ILE 30 CG2 -0.159 3.919
LH2_Sphaeroides.pdb #1.1/K BCL 101 CMD LH2_Sphaeroides.pdb #1.1/B ILE 30 CG2 -0.159 3.919
LH2_Sphaeroides.pdb #1.2/A BCL 101 C20 LH2_Sphaeroides.pdb #1.2/B ILE 6 CD1 -0.167 3.927
LH2_Sphaeroides.pdb #1.1/A BCL 101 C20 LH2_Sphaeroides.pdb #1.1/B ILE 6 CD1 -0.167 3.927
LH2_Sphaeroides.pdb #1.2/A BCL 101 CBC LH2_Sphaeroides.pdb #1.2/A VAL 34 CB -0.171 3.931
LH2_Sphaeroides.pdb #1.1/A BCL 101 CBC LH2_Sphaeroides.pdb #1.1/A VAL 34 CB -0.171 3.931
LH2_Sphaeroides.pdb #1.2/A BCL 101 CAB LH2_Sphaeroides.pdb #1.2/A TYR 45 OH -0.178 3.248
LH2_Sphaeroides.pdb #1.1/A BCL 101 CAB LH2_Sphaeroides.pdb #1.1/A TYR 45 OH -0.178 3.248
LH2_Sphaeroides.pdb #1.2/A BCL 101 C14 LH2_Sphaeroides.pdb #1.2/A SER 21 CA -0.179 3.939
LH2_Sphaeroides.pdb #1.1/A BCL 101 C14 LH2_Sphaeroides.pdb #1.1/A SER 21 CA -0.179 3.939
LH2_Sphaeroides.pdb #1.2/A BCL 101 CED LH2_Sphaeroides.pdb #1.2/J ALA 36 CA -0.185 3.945
LH2_Sphaeroides.pdb #1.1/A BCL 101 CED LH2_Sphaeroides.pdb #1.1/J ALA 36 CA -0.185 3.945
LH2_Sphaeroides.pdb #1.2/K BCL 101 CHA LH2_Sphaeroides.pdb #1.2/K HIS 40 CE1 -0.187 3.557
LH2_Sphaeroides.pdb #1.1/K BCL 101 CHA LH2_Sphaeroides.pdb #1.1/K HIS 40 CE1 -0.187 3.557
LH2_Sphaeroides.pdb #1.2/A BCL 101 CMB LH2_Sphaeroides.pdb #1.2/B ILE 30 CD1 -0.188 3.948
LH2_Sphaeroides.pdb #1.1/A BCL 101 CMB LH2_Sphaeroides.pdb #1.1/B ILE 30 CD1 -0.188 3.948
LH2_Sphaeroides.pdb #1.2/K BCL 101 C4 LH2_Sphaeroides.pdb #1.2/K THR 29 O -0.189 3.489
LH2_Sphaeroides.pdb #1.1/K BCL 101 C4 LH2_Sphaeroides.pdb #1.1/K THR 29 O -0.189 3.489
LH2_Sphaeroides.pdb #1.2/A BCL 101 CED LH2_Sphaeroides.pdb #1.2/J PHE 32 CE1 -0.192 3.832
LH2_Sphaeroides.pdb #1.1/A BCL 101 CED LH2_Sphaeroides.pdb #1.1/J PHE 32 CE1 -0.192 3.832
LH2_Sphaeroides.pdb #1.2/K BCL 101 O2D LH2_Sphaeroides.pdb #1.2/K PHE 32 CE1 -0.193 3.413
LH2_Sphaeroides.pdb #1.1/K BCL 101 O2D LH2_Sphaeroides.pdb #1.1/K PHE 32 CE1 -0.193 3.413
LH2_Sphaeroides.pdb #1.2/A BCL 101 CHC LH2_Sphaeroides.pdb #1.2/A HIS 31 CD2 -0.197 3.717
LH2_Sphaeroides.pdb #1.1/A BCL 101 CHC LH2_Sphaeroides.pdb #1.1/A HIS 31 CD2 -0.197 3.717
LH2_Sphaeroides.pdb #1.2/A BCL 101 CGA LH2_Sphaeroides.pdb #1.2/A SER 27 CB -0.198 3.688
LH2_Sphaeroides.pdb #1.1/A BCL 101 CGA LH2_Sphaeroides.pdb #1.1/A SER 27 CB -0.198 3.688
LH2_Sphaeroides.pdb #1.2/A BCL 101 CAC LH2_Sphaeroides.pdb #1.2/A TRP 40 CH2 -0.200 3.840
LH2_Sphaeroides.pdb #1.1/A BCL 101 CAC LH2_Sphaeroides.pdb #1.1/A TRP 40 CH2 -0.200 3.840
LH2_Sphaeroides.pdb #1.2/A BCL 101 C15 LH2_Sphaeroides.pdb #1.2/B LEU 18 CD2 -0.202 3.962
LH2_Sphaeroides.pdb #1.1/A BCL 101 C15 LH2_Sphaeroides.pdb #1.1/B LEU 18 CD2 -0.202 3.962
LH2_Sphaeroides.pdb #1.2/A BCL 101 C16 LH2_Sphaeroides.pdb #1.2/B LEU 18 CD2 -0.204 3.964
LH2_Sphaeroides.pdb #1.1/A BCL 101 C16 LH2_Sphaeroides.pdb #1.1/B LEU 18 CD2 -0.204 3.964
LH2_Sphaeroides.pdb #1.2/K BCL 101 C4 LH2_Sphaeroides.pdb #1.2/K ARG 30 CA -0.218 3.978
LH2_Sphaeroides.pdb #1.1/K BCL 101 C4 LH2_Sphaeroides.pdb #1.1/K ARG 30 CA -0.218 3.978
LH2_Sphaeroides.pdb #1.2/K BCL 101 NC LH2_Sphaeroides.pdb #1.2/K HIS 40 CD2 -0.221 3.621
LH2_Sphaeroides.pdb #1.1/K BCL 101 NC LH2_Sphaeroides.pdb #1.1/K HIS 40 CD2 -0.221 3.621
LH2_Sphaeroides.pdb #1.2/A BCL 101 CED LH2_Sphaeroides.pdb #1.2/J ALA 36 CB -0.225 3.985
LH2_Sphaeroides.pdb #1.1/A BCL 101 CED LH2_Sphaeroides.pdb #1.1/J ALA 36 CB -0.225 3.985
LH2_Sphaeroides.pdb #1.2/K BCL 101 CED LH2_Sphaeroides.pdb #1.2/K PHE 32 CE1 -0.227 3.867
LH2_Sphaeroides.pdb #1.1/K BCL 101 CED LH2_Sphaeroides.pdb #1.1/K PHE 32 CE1 -0.227 3.867
LH2_Sphaeroides.pdb #1.2/K BCL 101 CMC LH2_Sphaeroides.pdb #1.2/K TRP 49 CD1 -0.227 3.867
LH2_Sphaeroides.pdb #1.1/K BCL 101 CMC LH2_Sphaeroides.pdb #1.1/K TRP 49 CD1 -0.227 3.867
LH2_Sphaeroides.pdb #1.2/A BCL 101 C17 LH2_Sphaeroides.pdb #1.2/A LEU 20 CD1 -0.231 3.991
LH2_Sphaeroides.pdb #1.1/A BCL 101 C17 LH2_Sphaeroides.pdb #1.1/A LEU 20 CD1 -0.231 3.991
LH2_Sphaeroides.pdb #1.2/A BCL 101 CED LH2_Sphaeroides.pdb #1.2/J PHE 32 O -0.239 3.539
LH2_Sphaeroides.pdb #1.1/A BCL 101 CED LH2_Sphaeroides.pdb #1.1/J PHE 32 O -0.239 3.539
LH2_Sphaeroides.pdb #1.2/A BCL 101 C2 LH2_Sphaeroides.pdb #1.2/A VAL 24 CG2 -0.242 3.882
LH2_Sphaeroides.pdb #1.1/A BCL 101 C2 LH2_Sphaeroides.pdb #1.1/A VAL 24 CG2 -0.242 3.882
LH2_Sphaeroides.pdb #1.2/A BCL 101 C9 LH2_Sphaeroides.pdb #1.2/B PHE 19 CE1 -0.247 3.887
LH2_Sphaeroides.pdb #1.1/A BCL 101 C9 LH2_Sphaeroides.pdb #1.1/B PHE 19 CE1 -0.247 3.887
LH2_Sphaeroides.pdb #1.2/A BCL 101 C16 LH2_Sphaeroides.pdb #1.2/B PHE 19 CA -0.251 4.011
LH2_Sphaeroides.pdb #1.1/A BCL 101 C16 LH2_Sphaeroides.pdb #1.1/B PHE 19 CA -0.251 4.011
LH2_Sphaeroides.pdb #1.2/K BCL 101 C3 LH2_Sphaeroides.pdb #1.2/K THR 29 CG2 -0.253 3.743
LH2_Sphaeroides.pdb #1.1/K BCL 101 C3 LH2_Sphaeroides.pdb #1.1/K THR 29 CG2 -0.253 3.743
LH2_Sphaeroides.pdb #1.2/K BCL 101 C1A LH2_Sphaeroides.pdb #1.2/K HIS 40 CE1 -0.258 3.628
LH2_Sphaeroides.pdb #1.1/K BCL 101 C1A LH2_Sphaeroides.pdb #1.1/K HIS 40 CE1 -0.258 3.628
LH2_Sphaeroides.pdb #1.2/K BCL 101 NC LH2_Sphaeroides.pdb #1.2/K HIS 40 NE2 -0.259 3.139
LH2_Sphaeroides.pdb #1.1/K BCL 101 NC LH2_Sphaeroides.pdb #1.1/K HIS 40 NE2 -0.259 3.139
LH2_Sphaeroides.pdb #1.2/A BCL 101 C2D LH2_Sphaeroides.pdb #1.2/J ALA 39 CB -0.259 3.749
LH2_Sphaeroides.pdb #1.1/A BCL 101 C2D LH2_Sphaeroides.pdb #1.1/J ALA 39 CB -0.259 3.749
LH2_Sphaeroides.pdb #1.2/A BCL 101 C1 LH2_Sphaeroides.pdb #1.2/A VAL 24 CA -0.261 4.021
LH2_Sphaeroides.pdb #1.1/A BCL 101 C1 LH2_Sphaeroides.pdb #1.1/A VAL 24 CA -0.261 4.021
LH2_Sphaeroides.pdb #1.2/A BCL 101 CED LH2_Sphaeroides.pdb #1.2/J PHE 32 CD2 -0.262 3.902
LH2_Sphaeroides.pdb #1.1/A BCL 101 CED LH2_Sphaeroides.pdb #1.1/J PHE 32 CD2 -0.262 3.902
LH2_Sphaeroides.pdb #1.2/K BCL 101 OBD LH2_Sphaeroides.pdb #1.2/B SER 27 OG -0.269 2.749
LH2_Sphaeroides.pdb #1.1/K BCL 101 OBD LH2_Sphaeroides.pdb #1.1/B SER 27 OG -0.269 2.749
LH2_Sphaeroides.pdb #1.2/A BCL 101 CMD LH2_Sphaeroides.pdb #1.2/J ALA 39 C -0.270 3.760
LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD LH2_Sphaeroides.pdb #1.1/J ALA 39 C -0.270 3.760
LH2_Sphaeroides.pdb #1.2/A BCL 101 C1 LH2_Sphaeroides.pdb #1.2/A VAL 24 CG1 -0.276 4.036
LH2_Sphaeroides.pdb #1.1/A BCL 101 C1 LH2_Sphaeroides.pdb #1.1/A VAL 24 CG1 -0.276 4.036
LH2_Sphaeroides.pdb #1.2/A BCL 101 C5 LH2_Sphaeroides.pdb #1.2/A VAL 24 CG1 -0.283 4.043
LH2_Sphaeroides.pdb #1.1/A BCL 101 C5 LH2_Sphaeroides.pdb #1.1/A VAL 24 CG1 -0.283 4.043
LH2_Sphaeroides.pdb #1.2/A BCL 101 C16 LH2_Sphaeroides.pdb #1.2/B LEU 18 CG -0.286 4.046
LH2_Sphaeroides.pdb #1.1/A BCL 101 C16 LH2_Sphaeroides.pdb #1.1/B LEU 18 CG -0.286 4.046
LH2_Sphaeroides.pdb #1.2/K BCL 101 CMC LH2_Sphaeroides.pdb #1.2/K TRP 49 CE2 -0.290 3.780
LH2_Sphaeroides.pdb #1.1/K BCL 101 CMC LH2_Sphaeroides.pdb #1.1/K TRP 49 CE2 -0.290 3.780
LH2_Sphaeroides.pdb #1.2/K BCL 101 CMD LH2_Sphaeroides.pdb #1.2/B HIS 31 CG -0.292 3.782
LH2_Sphaeroides.pdb #1.1/K BCL 101 CMD LH2_Sphaeroides.pdb #1.1/B HIS 31 CG -0.292 3.782
LH2_Sphaeroides.pdb #1.2/K BCL 101 OBB LH2_Sphaeroides.pdb #1.2/A TYR 44 CZ -0.293 3.323
LH2_Sphaeroides.pdb #1.1/K BCL 101 OBB LH2_Sphaeroides.pdb #1.1/A TYR 44 CZ -0.293 3.323
LH2_Sphaeroides.pdb #1.2/A BCL 101 CAC LH2_Sphaeroides.pdb #1.2/A VAL 34 CG1 -0.296 4.056
LH2_Sphaeroides.pdb #1.1/A BCL 101 CAC LH2_Sphaeroides.pdb #1.1/A VAL 34 CG1 -0.296 4.056
LH2_Sphaeroides.pdb #1.2/A BCL 101 C15 LH2_Sphaeroides.pdb #1.2/B LEU 18 CG -0.300 4.060
LH2_Sphaeroides.pdb #1.1/A BCL 101 C15 LH2_Sphaeroides.pdb #1.1/B LEU 18 CG -0.300 4.060
LH2_Sphaeroides.pdb #1.2/K BCL 101 C4 LH2_Sphaeroides.pdb #1.2/K THR 29 CG2 -0.300 4.060
LH2_Sphaeroides.pdb #1.1/K BCL 101 C4 LH2_Sphaeroides.pdb #1.1/K THR 29 CG2 -0.300 4.060
LH2_Sphaeroides.pdb #1.2/A BCL 101 C4B LH2_Sphaeroides.pdb #1.2/A HIS 31 CD2 -0.304 3.674
LH2_Sphaeroides.pdb #1.1/A BCL 101 C4B LH2_Sphaeroides.pdb #1.1/A HIS 31 CD2 -0.304 3.674
LH2_Sphaeroides.pdb #1.2/K BCL 101 NB LH2_Sphaeroides.pdb #1.2/K HIS 40 NE2 -0.305 3.185
LH2_Sphaeroides.pdb #1.1/K BCL 101 NB LH2_Sphaeroides.pdb #1.1/K HIS 40 NE2 -0.305 3.185
LH2_Sphaeroides.pdb #1.2/A BCL 101 C1 LH2_Sphaeroides.pdb #1.2/A SER 27 OG -0.310 3.650
LH2_Sphaeroides.pdb #1.1/A BCL 101 C1 LH2_Sphaeroides.pdb #1.1/A SER 27 OG -0.310 3.650
LH2_Sphaeroides.pdb #1.2/A BCL 101 CMD LH2_Sphaeroides.pdb #1.2/J ALA 39 O -0.311 3.611
LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD LH2_Sphaeroides.pdb #1.1/J ALA 39 O -0.311 3.611
LH2_Sphaeroides.pdb #1.2/A BCL 101 C14 LH2_Sphaeroides.pdb #1.2/A VAL 24 CB -0.312 4.072
LH2_Sphaeroides.pdb #1.1/A BCL 101 C14 LH2_Sphaeroides.pdb #1.1/A VAL 24 CB -0.312 4.072
LH2_Sphaeroides.pdb #1.2/A BCL 101 OBB LH2_Sphaeroides.pdb #1.2/A TYR 45 CZ -0.315 3.345
LH2_Sphaeroides.pdb #1.1/A BCL 101 OBB LH2_Sphaeroides.pdb #1.1/A TYR 45 CZ -0.315 3.345
LH2_Sphaeroides.pdb #1.2/A BCL 101 C1C LH2_Sphaeroides.pdb #1.2/A HIS 31 CD2 -0.317 3.687
LH2_Sphaeroides.pdb #1.1/A BCL 101 C1C LH2_Sphaeroides.pdb #1.1/A HIS 31 CD2 -0.317 3.687
LH2_Sphaeroides.pdb #1.2/K BCL 101 NB LH2_Sphaeroides.pdb #1.2/K HIS 40 CD2 -0.321 3.721
LH2_Sphaeroides.pdb #1.1/K BCL 101 NB LH2_Sphaeroides.pdb #1.1/K HIS 40 CD2 -0.321 3.721
LH2_Sphaeroides.pdb #1.2/K BCL 101 O1A LH2_Sphaeroides.pdb #1.2/K ALA 36 CB -0.323 3.623
LH2_Sphaeroides.pdb #1.1/K BCL 101 O1A LH2_Sphaeroides.pdb #1.1/K ALA 36 CB -0.323 3.623
LH2_Sphaeroides.pdb #1.2/K BCL 101 CBC LH2_Sphaeroides.pdb #1.2/K TRP 49 CE3 -0.326 3.966
LH2_Sphaeroides.pdb #1.1/K BCL 101 CBC LH2_Sphaeroides.pdb #1.1/K TRP 49 CE3 -0.326 3.966
LH2_Sphaeroides.pdb #1.2/A BCL 101 C9 LH2_Sphaeroides.pdb #1.2/B PHE 19 CD2 -0.331 3.971
LH2_Sphaeroides.pdb #1.1/A BCL 101 C9 LH2_Sphaeroides.pdb #1.1/B PHE 19 CD2 -0.331 3.971
LH2_Sphaeroides.pdb #1.2/A BCL 101 NC LH2_Sphaeroides.pdb #1.2/A HIS 31 NE2 -0.333 3.213
LH2_Sphaeroides.pdb #1.1/A BCL 101 NC LH2_Sphaeroides.pdb #1.1/A HIS 31 NE2 -0.333 3.213
LH2_Sphaeroides.pdb #1.2/A BCL 101 CBC LH2_Sphaeroides.pdb #1.2/A LEU 41 CD2 -0.335 4.095
LH2_Sphaeroides.pdb #1.1/A BCL 101 CBC LH2_Sphaeroides.pdb #1.1/A LEU 41 CD2 -0.335 4.095
LH2_Sphaeroides.pdb #1.2/A BCL 101 CGD LH2_Sphaeroides.pdb #1.2/J ALA 36 CA -0.338 3.828
LH2_Sphaeroides.pdb #1.1/A BCL 101 CGD LH2_Sphaeroides.pdb #1.1/J ALA 36 CA -0.338 3.828
LH2_Sphaeroides.pdb #1.2/K BCL 101 CED LH2_Sphaeroides.pdb #1.2/B SER 27 N -0.339 3.859
LH2_Sphaeroides.pdb #1.1/K BCL 101 CED LH2_Sphaeroides.pdb #1.1/B SER 27 N -0.339 3.859
LH2_Sphaeroides.pdb #1.2/A BCL 101 CMD LH2_Sphaeroides.pdb #1.2/J HIS 40 N -0.340 3.860
LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD LH2_Sphaeroides.pdb #1.1/J HIS 40 N -0.340 3.860
LH2_Sphaeroides.pdb #1.2/A BCL 101 CMD LH2_Sphaeroides.pdb #1.2/J ALA 39 CB -0.346 4.106
LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD LH2_Sphaeroides.pdb #1.1/J ALA 39 CB -0.346 4.106
LH2_Sphaeroides.pdb #1.2/K BCL 101 C17 LH2_Sphaeroides.pdb #1.2/J PHE 32 CD2 -0.348 3.988
LH2_Sphaeroides.pdb #1.1/K BCL 101 C17 LH2_Sphaeroides.pdb #1.1/J PHE 32 CD2 -0.348 3.988
LH2_Sphaeroides.pdb #1.2/A BCL 101 ND LH2_Sphaeroides.pdb #1.2/A HIS 31 CE1 -0.350 3.750
LH2_Sphaeroides.pdb #1.1/A BCL 101 ND LH2_Sphaeroides.pdb #1.1/A HIS 31 CE1 -0.350 3.750
LH2_Sphaeroides.pdb #1.2/K BCL 101 CBC LH2_Sphaeroides.pdb #1.2/B TRP 40 CZ2 -0.351 3.991
LH2_Sphaeroides.pdb #1.1/K BCL 101 CBC LH2_Sphaeroides.pdb #1.1/B TRP 40 CZ2 -0.351 3.991
LH2_Sphaeroides.pdb #1.2/A BCL 101 CGA LH2_Sphaeroides.pdb #1.2/A SER 27 OG -0.352 3.422
LH2_Sphaeroides.pdb #1.1/A BCL 101 CGA LH2_Sphaeroides.pdb #1.1/A SER 27 OG -0.352 3.422
LH2_Sphaeroides.pdb #1.2/K BCL 101 CBC LH2_Sphaeroides.pdb #1.2/K TRP 49 CG -0.352 3.842
LH2_Sphaeroides.pdb #1.1/K BCL 101 CBC LH2_Sphaeroides.pdb #1.1/K TRP 49 CG -0.352 3.842
LH2_Sphaeroides.pdb #1.2/A BCL 101 C15 LH2_Sphaeroides.pdb #1.2/A LEU 20 CB -0.358 4.118
LH2_Sphaeroides.pdb #1.1/A BCL 101 C15 LH2_Sphaeroides.pdb #1.1/A LEU 20 CB -0.358 4.118
LH2_Sphaeroides.pdb #1.2/A BCL 101 C1A LH2_Sphaeroides.pdb #1.2/A HIS 31 CE1 -0.359 3.729
LH2_Sphaeroides.pdb #1.1/A BCL 101 C1A LH2_Sphaeroides.pdb #1.1/A HIS 31 CE1 -0.359 3.729
LH2_Sphaeroides.pdb #1.2/A BCL 101 CED LH2_Sphaeroides.pdb #1.2/J PHE 32 CD1 -0.362 4.002
LH2_Sphaeroides.pdb #1.1/A BCL 101 CED LH2_Sphaeroides.pdb #1.1/J PHE 32 CD1 -0.362 4.002
LH2_Sphaeroides.pdb #1.2/A BCL 101 C10 LH2_Sphaeroides.pdb #1.2/B PHE 19 CE2 -0.362 4.002
LH2_Sphaeroides.pdb #1.1/A BCL 101 C10 LH2_Sphaeroides.pdb #1.1/B PHE 19 CE2 -0.362 4.002
LH2_Sphaeroides.pdb #1.2/A BCL 101 O1D LH2_Sphaeroides.pdb #1.2/J MET 35 CG -0.363 3.663
LH2_Sphaeroides.pdb #1.1/A BCL 101 O1D LH2_Sphaeroides.pdb #1.1/J MET 35 CG -0.363 3.663
LH2_Sphaeroides.pdb #1.2/K BCL 101 C2C LH2_Sphaeroides.pdb #1.2/K TRP 49 NE1 -0.365 3.885
LH2_Sphaeroides.pdb #1.1/K BCL 101 C2C LH2_Sphaeroides.pdb #1.1/K TRP 49 NE1 -0.365 3.885
LH2_Sphaeroides.pdb #1.2/K BCL 101 C2C LH2_Sphaeroides.pdb #1.2/K TRP 49 CD2 -0.365 3.855
LH2_Sphaeroides.pdb #1.1/K BCL 101 C2C LH2_Sphaeroides.pdb #1.1/K TRP 49 CD2 -0.365 3.855
LH2_Sphaeroides.pdb #1.2/K BCL 101 CAC LH2_Sphaeroides.pdb #1.2/K ALA 43 CB -0.365 4.125
LH2_Sphaeroides.pdb #1.1/K BCL 101 CAC LH2_Sphaeroides.pdb #1.1/K ALA 43 CB -0.365 4.125
LH2_Sphaeroides.pdb #1.2/A BCL 101 O2D LH2_Sphaeroides.pdb #1.2/J PHE 32 CZ -0.367 3.587
LH2_Sphaeroides.pdb #1.1/A BCL 101 O2D LH2_Sphaeroides.pdb #1.1/J PHE 32 CZ -0.367 3.587
LH2_Sphaeroides.pdb #1.2/A BCL 101 C20 LH2_Sphaeroides.pdb #1.2/B TRP 7 CZ2 -0.372 4.012
LH2_Sphaeroides.pdb #1.1/A BCL 101 C20 LH2_Sphaeroides.pdb #1.1/B TRP 7 CZ2 -0.372 4.012
LH2_Sphaeroides.pdb #1.2/A BCL 101 O1D LH2_Sphaeroides.pdb #1.2/J ALA 36 CA -0.373 3.673
LH2_Sphaeroides.pdb #1.1/A BCL 101 O1D LH2_Sphaeroides.pdb #1.1/J ALA 36 CA -0.373 3.673
LH2_Sphaeroides.pdb #1.2/A BCL 101 C18 LH2_Sphaeroides.pdb #1.2/B GLY 15 O -0.376 3.676
LH2_Sphaeroides.pdb #1.1/A BCL 101 C18 LH2_Sphaeroides.pdb #1.1/B GLY 15 O -0.376 3.676
LH2_Sphaeroides.pdb #1.2/K BCL 101 C4D LH2_Sphaeroides.pdb #1.2/B ILE 30 CD1 -0.377 3.867
LH2_Sphaeroides.pdb #1.1/K BCL 101 C4D LH2_Sphaeroides.pdb #1.1/B ILE 30 CD1 -0.377 3.867
LH2_Sphaeroides.pdb #1.2/K BCL 101 CED LH2_Sphaeroides.pdb #1.2/B SER 27 CA -0.387 4.147
LH2_Sphaeroides.pdb #1.1/K BCL 101 CED LH2_Sphaeroides.pdb #1.1/B SER 27 CA -0.387 4.147
LH2_Sphaeroides.pdb #1.2/A BCL 101 C7 LH2_Sphaeroides.pdb #1.2/B ALA 23 CA -0.390 4.150
LH2_Sphaeroides.pdb #1.1/A BCL 101 C7 LH2_Sphaeroides.pdb #1.1/B ALA 23 CA -0.390 4.150
LH2_Sphaeroides.pdb #1.2/A BCL 101 C16 LH2_Sphaeroides.pdb #1.2/B PHE 19 CB -0.391 4.151
LH2_Sphaeroides.pdb #1.1/A BCL 101 C16 LH2_Sphaeroides.pdb #1.1/B PHE 19 CB -0.391 4.151
LH2_Sphaeroides.pdb #1.2/K BCL 101 C15 LH2_Sphaeroides.pdb #1.2/J PHE 32 CD2 -0.394 4.034
LH2_Sphaeroides.pdb #1.1/K BCL 101 C15 LH2_Sphaeroides.pdb #1.1/J PHE 32 CD2 -0.394 4.034
342 contacts
> select #1/A:1
22 atoms, 20 bonds, 2 residues, 2 models selected
> select #1/A:11
18 atoms, 16 bonds, 2 residues, 2 models selected
> select #1/A:11@N/B:38/C
1196 atoms, 1198 bonds, 18 pseudobonds, 138 residues, 4 models selected
> select #1/A:11@N/B:38@C
4 atoms, 4 residues, 2 models selected
> color sel yellow
> color sel cyan
> select #1/A:39-45/B:40
158 atoms, 168 bonds, 4 pseudobonds, 16 residues, 4 models selected
> show sel atoms
> select #1/A:39-45/B:39-40
172 atoms, 182 bonds, 18 residues, 2 models selected
> show sel atoms
> select #1/A:39-45/B:39-40/K:48-49
214 atoms, 228 bonds, 22 residues, 2 models selected
> show sel atoms
> style sel sphere
Changed 214 atom styles
> style sel stick
Changed 214 atom styles
> select #1/A:39-45/B:39-40/K:48-49/A:101/K:101
478 atoms, 508 bonds, 16 pseudobonds, 26 residues, 4 models selected
> ui tool show H-Bonds
> hbonds sel dashes 6 restrict both interModel false intraRes false reveal
> true retainCurrent true
12 hydrogen bonds found
> select add #1
19000 atoms, 18990 bonds, 438 pseudobonds, 2368 residues, 9 models selected
> select subtract #1
Nothing selected
> save "/Users/drornoy/Desktop/LH2 helices/LH2 5hB design p_ap_p_p_ap
> packing.cxs"
——— End of log from Wed Aug 16 15:24:32 2023 ———
opened ChimeraX session
> select #1/A-B:11-38/J-K:20-47 &@CA
224 atoms, 2 pseudobonds, 224 residues, 4 models selected
> select #1/A-B:11-38/J-K:20-47 &~@CA
1380 atoms, 972 bonds, 42 pseudobonds, 224 residues, 4 models selected
> hide sel atoms
> style sel ball
Changed 1380 atom styles
> select #1/A-B:11-38/J-K:20-47 &@CA
224 atoms, 208 pseudobonds, 224 residues, 4 models selected
> style sel ball
Changed 224 atom styles
> select #4/A
148 atoms, 148 bonds, 27 pseudobonds, 28 residues, 2 models selected
> color sel violet
> hide #!3 models
> color sel byhetero
> select #4/B
142 atoms, 141 bonds, 27 pseudobonds, 28 residues, 2 models selected
> color sel rosy brown
> color sel peru
> color sel byhetero
> select #4/C
140 atoms, 139 bonds, 27 pseudobonds, 28 residues, 2 models selected
> color sel slate blue
> color sel medium slate blue
> color sel byhetero
> select #1/A:101/K:101
264 atoms, 280 bonds, 16 pseudobonds, 4 residues, 4 models selected
> select #1/A:101/K:101 &~@C[1][0123456789],C[0123456789],C20
184 atoms, 200 bonds, 16 pseudobonds, 4 residues, 4 models selected
> select #1/A:101/K:101 &@C[1][0123456789],C[0123456789],C20
80 atoms, 76 bonds, 4 residues, 2 models selected
> hide sel atoms
> select #1/A:101/K:101 &~@C[1][0123456789],C[0123456789],C20
184 atoms, 200 bonds, 16 pseudobonds, 4 residues, 4 models selected
> ui tool show Contacts
> contacts sel restrict "#1 &protein" resSeparation 5 ignoreHiddenModels true
> select true makePseudobonds false reveal true log true
Allowed overlap: -0.4
H-bond overlap reduction: 0.4
Ignore contacts between atoms separated by 4 bonds or less
Ignore contacts between atoms in residues less than 5 apart in sequence
Detect intra-residue contacts: False
Detect intra-molecule contacts: True
236 contacts
atom1 atom2 overlap distance
LH2_Sphaeroides.pdb #1.2/K BCL 101 CMD LH2_Sphaeroides.pdb #1.2/B HIS 31 CE1 0.497 3.143
LH2_Sphaeroides.pdb #1.1/K BCL 101 CMD LH2_Sphaeroides.pdb #1.1/B HIS 31 CE1 0.497 3.143
LH2_Sphaeroides.pdb #1.2/K BCL 101 ND LH2_Sphaeroides.pdb #1.2/K HIS 40 NE2 0.350 2.930
LH2_Sphaeroides.pdb #1.1/K BCL 101 ND LH2_Sphaeroides.pdb #1.1/K HIS 40 NE2 0.350 2.930
LH2_Sphaeroides.pdb #1.2/K BCL 101 ND LH2_Sphaeroides.pdb #1.2/K HIS 40 CE1 0.329 3.071
LH2_Sphaeroides.pdb #1.1/K BCL 101 ND LH2_Sphaeroides.pdb #1.1/K HIS 40 CE1 0.329 3.071
LH2_Sphaeroides.pdb #1.2/A BCL 101 MG LH2_Sphaeroides.pdb #1.2/A HIS 31 NE2 0.309 1.901
LH2_Sphaeroides.pdb #1.1/A BCL 101 MG LH2_Sphaeroides.pdb #1.1/A HIS 31 NE2 0.309 1.901
LH2_Sphaeroides.pdb #1.2/K BCL 101 MG LH2_Sphaeroides.pdb #1.2/K HIS 40 NE2 0.309 1.901
LH2_Sphaeroides.pdb #1.1/K BCL 101 MG LH2_Sphaeroides.pdb #1.1/K HIS 40 NE2 0.309 1.901
LH2_Sphaeroides.pdb #1.2/A BCL 101 NA LH2_Sphaeroides.pdb #1.2/A HIS 31 NE2 0.244 3.036
LH2_Sphaeroides.pdb #1.1/A BCL 101 NA LH2_Sphaeroides.pdb #1.1/A HIS 31 NE2 0.244 3.036
LH2_Sphaeroides.pdb #1.2/K BCL 101 CMD LH2_Sphaeroides.pdb #1.2/B HIS 31 NE2 0.206 3.314
LH2_Sphaeroides.pdb #1.1/K BCL 101 CMD LH2_Sphaeroides.pdb #1.1/B HIS 31 NE2 0.206 3.314
LH2_Sphaeroides.pdb #1.2/A BCL 101 ND LH2_Sphaeroides.pdb #1.2/A HIS 31 NE2 0.163 3.117
LH2_Sphaeroides.pdb #1.1/A BCL 101 ND LH2_Sphaeroides.pdb #1.1/A HIS 31 NE2 0.163 3.117
LH2_Sphaeroides.pdb #1.2/K BCL 101 NA LH2_Sphaeroides.pdb #1.2/K HIS 40 NE2 0.133 3.147
LH2_Sphaeroides.pdb #1.1/K BCL 101 NA LH2_Sphaeroides.pdb #1.1/K HIS 40 NE2 0.133 3.147
LH2_Sphaeroides.pdb #1.2/K BCL 101 CED LH2_Sphaeroides.pdb #1.2/B ALA 23 O 0.124 3.176
LH2_Sphaeroides.pdb #1.1/K BCL 101 CED LH2_Sphaeroides.pdb #1.1/B ALA 23 O 0.124 3.176
LH2_Sphaeroides.pdb #1.2/A BCL 101 NA LH2_Sphaeroides.pdb #1.2/A HIS 31 CE1 0.121 3.279
LH2_Sphaeroides.pdb #1.1/A BCL 101 NA LH2_Sphaeroides.pdb #1.1/A HIS 31 CE1 0.121 3.279
LH2_Sphaeroides.pdb #1.2/A BCL 101 C3D LH2_Sphaeroides.pdb #1.2/J ALA 39 CB 0.102 3.388
LH2_Sphaeroides.pdb #1.1/A BCL 101 C3D LH2_Sphaeroides.pdb #1.1/J ALA 39 CB 0.102 3.388
LH2_Sphaeroides.pdb #1.2/A BCL 101 CED LH2_Sphaeroides.pdb #1.2/J MET 35 CG 0.098 3.662
LH2_Sphaeroides.pdb #1.1/A BCL 101 CED LH2_Sphaeroides.pdb #1.1/J MET 35 CG 0.098 3.662
LH2_Sphaeroides.pdb #1.2/K BCL 101 CMC LH2_Sphaeroides.pdb #1.2/A TYR 45 CE1 0.093 3.547
LH2_Sphaeroides.pdb #1.1/K BCL 101 CMC LH2_Sphaeroides.pdb #1.1/A TYR 45 CE1 0.093 3.547
LH2_Sphaeroides.pdb #1.2/K BCL 101 CMD LH2_Sphaeroides.pdb #1.2/B HIS 31 ND1 0.089 3.431
LH2_Sphaeroides.pdb #1.1/K BCL 101 CMD LH2_Sphaeroides.pdb #1.1/B HIS 31 ND1 0.089 3.431
LH2_Sphaeroides.pdb #1.2/K BCL 101 CMC LH2_Sphaeroides.pdb #1.2/A TYR 45 CD1 0.071 3.569
LH2_Sphaeroides.pdb #1.1/K BCL 101 CMC LH2_Sphaeroides.pdb #1.1/A TYR 45 CD1 0.071 3.569
LH2_Sphaeroides.pdb #1.2/A BCL 101 CMC LH2_Sphaeroides.pdb #1.2/A LEU 41 CD1 0.055 3.705
LH2_Sphaeroides.pdb #1.1/A BCL 101 CMC LH2_Sphaeroides.pdb #1.1/A LEU 41 CD1 0.055 3.705
LH2_Sphaeroides.pdb #1.2/K BCL 101 C1D LH2_Sphaeroides.pdb #1.2/B ILE 30 CG2 0.055 3.435
LH2_Sphaeroides.pdb #1.1/K BCL 101 C1D LH2_Sphaeroides.pdb #1.1/B ILE 30 CG2 0.055 3.435
LH2_Sphaeroides.pdb #1.2/K BCL 101 O1D LH2_Sphaeroides.pdb #1.2/B ILE 30 CD1 0.049 3.251
LH2_Sphaeroides.pdb #1.1/K BCL 101 O1D LH2_Sphaeroides.pdb #1.1/B ILE 30 CD1 0.049 3.251
LH2_Sphaeroides.pdb #1.2/K BCL 101 NA LH2_Sphaeroides.pdb #1.2/K HIS 40 CE1 0.044 3.356
LH2_Sphaeroides.pdb #1.1/K BCL 101 NA LH2_Sphaeroides.pdb #1.1/K HIS 40 CE1 0.044 3.356
LH2_Sphaeroides.pdb #1.2/K BCL 101 CED LH2_Sphaeroides.pdb #1.2/K PHE 32 CZ 0.042 3.598
LH2_Sphaeroides.pdb #1.1/K BCL 101 CED LH2_Sphaeroides.pdb #1.1/K PHE 32 CZ 0.042 3.598
LH2_Sphaeroides.pdb #1.2/A BCL 101 NC LH2_Sphaeroides.pdb #1.2/A HIS 31 CD2 0.039 3.361
LH2_Sphaeroides.pdb #1.1/A BCL 101 NC LH2_Sphaeroides.pdb #1.1/A HIS 31 CD2 0.039 3.361
LH2_Sphaeroides.pdb #1.2/A BCL 101 CAA LH2_Sphaeroides.pdb #1.2/A SER 27 OG 0.014 3.326
LH2_Sphaeroides.pdb #1.1/A BCL 101 CAA LH2_Sphaeroides.pdb #1.1/A SER 27 OG 0.014 3.326
LH2_Sphaeroides.pdb #1.2/K BCL 101 C4D LH2_Sphaeroides.pdb #1.2/K HIS 40 CE1 0.007 3.363
LH2_Sphaeroides.pdb #1.1/K BCL 101 C4D LH2_Sphaeroides.pdb #1.1/K HIS 40 CE1 0.007 3.363
LH2_Sphaeroides.pdb #1.2/A BCL 101 CAD LH2_Sphaeroides.pdb #1.2/J ALA 39 CB -0.003 3.493
LH2_Sphaeroides.pdb #1.1/A BCL 101 CAD LH2_Sphaeroides.pdb #1.1/J ALA 39 CB -0.003 3.493
LH2_Sphaeroides.pdb #1.2/K BCL 101 CHD LH2_Sphaeroides.pdb #1.2/B ILE 30 CG2 -0.009 3.649
LH2_Sphaeroides.pdb #1.1/K BCL 101 CHD LH2_Sphaeroides.pdb #1.1/B ILE 30 CG2 -0.009 3.649
LH2_Sphaeroides.pdb #1.2/K BCL 101 OBD LH2_Sphaeroides.pdb #1.2/B SER 27 CB -0.010 3.310
LH2_Sphaeroides.pdb #1.1/K BCL 101 OBD LH2_Sphaeroides.pdb #1.1/B SER 27 CB -0.010 3.310
LH2_Sphaeroides.pdb #1.2/K BCL 101 CBC LH2_Sphaeroides.pdb #1.2/K TRP 49 CB -0.025 3.785
LH2_Sphaeroides.pdb #1.1/K BCL 101 CBC LH2_Sphaeroides.pdb #1.1/K TRP 49 CB -0.025 3.785
LH2_Sphaeroides.pdb #1.2/K BCL 101 CMC LH2_Sphaeroides.pdb #1.2/K TRP 49 NE1 -0.025 3.545
LH2_Sphaeroides.pdb #1.1/K BCL 101 CMC LH2_Sphaeroides.pdb #1.1/K TRP 49 NE1 -0.025 3.545
LH2_Sphaeroides.pdb #1.2/A BCL 101 CMA LH2_Sphaeroides.pdb #1.2/J MET 35 CE -0.027 3.787
LH2_Sphaeroides.pdb #1.1/A BCL 101 CMA LH2_Sphaeroides.pdb #1.1/J MET 35 CE -0.027 3.787
LH2_Sphaeroides.pdb #1.2/A BCL 101 CBB LH2_Sphaeroides.pdb #1.2/B ILE 30 CG2 -0.034 3.794
LH2_Sphaeroides.pdb #1.1/A BCL 101 CBB LH2_Sphaeroides.pdb #1.1/B ILE 30 CG2 -0.034 3.794
LH2_Sphaeroides.pdb #1.2/A BCL 101 CBC LH2_Sphaeroides.pdb #1.2/A HIS 31 CD2 -0.041 3.681
LH2_Sphaeroides.pdb #1.1/A BCL 101 CBC LH2_Sphaeroides.pdb #1.1/A HIS 31 CD2 -0.041 3.681
LH2_Sphaeroides.pdb #1.2/A BCL 101 OBD LH2_Sphaeroides.pdb #1.2/J HIS 40 CE1 -0.046 3.226
LH2_Sphaeroides.pdb #1.1/A BCL 101 OBD LH2_Sphaeroides.pdb #1.1/J HIS 40 CE1 -0.046 3.226
LH2_Sphaeroides.pdb #1.2/K BCL 101 CHC LH2_Sphaeroides.pdb #1.2/K TRP 49 CZ2 -0.046 3.566
LH2_Sphaeroides.pdb #1.1/K BCL 101 CHC LH2_Sphaeroides.pdb #1.1/K TRP 49 CZ2 -0.046 3.566
LH2_Sphaeroides.pdb #1.2/A BCL 101 O1D LH2_Sphaeroides.pdb #1.2/J ALA 39 CB -0.048 3.348
LH2_Sphaeroides.pdb #1.1/A BCL 101 O1D LH2_Sphaeroides.pdb #1.1/J ALA 39 CB -0.048 3.348
LH2_Sphaeroides.pdb #1.2/A BCL 101 NB LH2_Sphaeroides.pdb #1.2/A HIS 31 CD2 -0.050 3.450
LH2_Sphaeroides.pdb #1.1/A BCL 101 NB LH2_Sphaeroides.pdb #1.1/A HIS 31 CD2 -0.050 3.450
LH2_Sphaeroides.pdb #1.2/A BCL 101 C2C LH2_Sphaeroides.pdb #1.2/A LEU 41 CD1 -0.050 3.810
LH2_Sphaeroides.pdb #1.1/A BCL 101 C2C LH2_Sphaeroides.pdb #1.1/A LEU 41 CD1 -0.050 3.810
LH2_Sphaeroides.pdb #1.2/A BCL 101 CED LH2_Sphaeroides.pdb #1.2/J PHE 32 CZ -0.051 3.691
LH2_Sphaeroides.pdb #1.1/A BCL 101 CED LH2_Sphaeroides.pdb #1.1/J PHE 32 CZ -0.051 3.691
LH2_Sphaeroides.pdb #1.2/K BCL 101 OBB LH2_Sphaeroides.pdb #1.2/A TYR 44 CE2 -0.056 3.236
LH2_Sphaeroides.pdb #1.1/K BCL 101 OBB LH2_Sphaeroides.pdb #1.1/A TYR 44 CE2 -0.056 3.236
LH2_Sphaeroides.pdb #1.2/K BCL 101 C2C LH2_Sphaeroides.pdb #1.2/K TRP 49 CE2 -0.067 3.557
LH2_Sphaeroides.pdb #1.1/K BCL 101 C2C LH2_Sphaeroides.pdb #1.1/K TRP 49 CE2 -0.067 3.557
LH2_Sphaeroides.pdb #1.2/A BCL 101 OBB LH2_Sphaeroides.pdb #1.2/A TYR 45 OH -0.070 2.550
LH2_Sphaeroides.pdb #1.1/A BCL 101 OBB LH2_Sphaeroides.pdb #1.1/A TYR 45 OH -0.070 2.550
LH2_Sphaeroides.pdb #1.2/K BCL 101 O2D LH2_Sphaeroides.pdb #1.2/K PHE 32 CZ -0.072 3.292
LH2_Sphaeroides.pdb #1.1/K BCL 101 O2D LH2_Sphaeroides.pdb #1.1/K PHE 32 CZ -0.072 3.292
LH2_Sphaeroides.pdb #1.2/K BCL 101 C2D LH2_Sphaeroides.pdb #1.2/B ILE 30 CG2 -0.075 3.565
LH2_Sphaeroides.pdb #1.1/K BCL 101 C2D LH2_Sphaeroides.pdb #1.1/B ILE 30 CG2 -0.075 3.565
LH2_Sphaeroides.pdb #1.2/A BCL 101 CED LH2_Sphaeroides.pdb #1.2/J MET 35 CB -0.080 3.840
LH2_Sphaeroides.pdb #1.1/A BCL 101 CED LH2_Sphaeroides.pdb #1.1/J MET 35 CB -0.080 3.840
LH2_Sphaeroides.pdb #1.2/A BCL 101 OBD LH2_Sphaeroides.pdb #1.2/J ALA 36 CB -0.083 3.383
LH2_Sphaeroides.pdb #1.1/A BCL 101 OBD LH2_Sphaeroides.pdb #1.1/J ALA 36 CB -0.083 3.383
LH2_Sphaeroides.pdb #1.2/K BCL 101 CMD LH2_Sphaeroides.pdb #1.2/B HIS 31 CD2 -0.085 3.725
LH2_Sphaeroides.pdb #1.1/K BCL 101 CMD LH2_Sphaeroides.pdb #1.1/B HIS 31 CD2 -0.085 3.725
LH2_Sphaeroides.pdb #1.2/A BCL 101 CED LH2_Sphaeroides.pdb #1.2/J PHE 32 CE2 -0.085 3.725
LH2_Sphaeroides.pdb #1.1/A BCL 101 CED LH2_Sphaeroides.pdb #1.1/J PHE 32 CE2 -0.085 3.725
LH2_Sphaeroides.pdb #1.2/K BCL 101 OBB LH2_Sphaeroides.pdb #1.2/A TYR 44 OH -0.086 2.566
LH2_Sphaeroides.pdb #1.1/K BCL 101 OBB LH2_Sphaeroides.pdb #1.1/A TYR 44 OH -0.086 2.566
LH2_Sphaeroides.pdb #1.2/K BCL 101 C2C LH2_Sphaeroides.pdb #1.2/K TRP 49 CZ2 -0.090 3.730
LH2_Sphaeroides.pdb #1.1/K BCL 101 C2C LH2_Sphaeroides.pdb #1.1/K TRP 49 CZ2 -0.090 3.730
LH2_Sphaeroides.pdb #1.2/A BCL 101 CED LH2_Sphaeroides.pdb #1.2/J MET 35 SD -0.094 3.744
LH2_Sphaeroides.pdb #1.1/A BCL 101 CED LH2_Sphaeroides.pdb #1.1/J MET 35 SD -0.094 3.744
LH2_Sphaeroides.pdb #1.2/K BCL 101 CED LH2_Sphaeroides.pdb #1.2/B SER 27 CB -0.098 3.858
LH2_Sphaeroides.pdb #1.1/K BCL 101 CED LH2_Sphaeroides.pdb #1.1/B SER 27 CB -0.098 3.858
LH2_Sphaeroides.pdb #1.2/A BCL 101 CMD LH2_Sphaeroides.pdb #1.2/J HIS 40 ND1 -0.104 3.624
LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD LH2_Sphaeroides.pdb #1.1/J HIS 40 ND1 -0.104 3.624
LH2_Sphaeroides.pdb #1.2/K BCL 101 O1A LH2_Sphaeroides.pdb #1.2/K PHE 32 CD1 -0.106 3.286
LH2_Sphaeroides.pdb #1.1/K BCL 101 O1A LH2_Sphaeroides.pdb #1.1/K PHE 32 CD1 -0.106 3.286
LH2_Sphaeroides.pdb #1.2/K BCL 101 O1A LH2_Sphaeroides.pdb #1.2/K GLY 33 CA -0.110 3.410
LH2_Sphaeroides.pdb #1.1/K BCL 101 O1A LH2_Sphaeroides.pdb #1.1/K GLY 33 CA -0.110 3.410
LH2_Sphaeroides.pdb #1.2/A BCL 101 OBD LH2_Sphaeroides.pdb #1.2/J ALA 36 CA -0.115 3.415
LH2_Sphaeroides.pdb #1.1/A BCL 101 OBD LH2_Sphaeroides.pdb #1.1/J ALA 36 CA -0.115 3.415
LH2_Sphaeroides.pdb #1.2/A BCL 101 CMD LH2_Sphaeroides.pdb #1.2/J HIS 40 CE1 -0.117 3.757
LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD LH2_Sphaeroides.pdb #1.1/J HIS 40 CE1 -0.117 3.757
LH2_Sphaeroides.pdb #1.2/A BCL 101 CBC LH2_Sphaeroides.pdb #1.2/A VAL 34 CG1 -0.120 3.880
LH2_Sphaeroides.pdb #1.1/A BCL 101 CBC LH2_Sphaeroides.pdb #1.1/A VAL 34 CG1 -0.120 3.880
LH2_Sphaeroides.pdb #1.2/A BCL 101 CMD LH2_Sphaeroides.pdb #1.2/J ALA 43 CB -0.123 3.883
LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD LH2_Sphaeroides.pdb #1.1/J ALA 43 CB -0.123 3.883
LH2_Sphaeroides.pdb #1.2/A BCL 101 CED LH2_Sphaeroides.pdb #1.2/J ALA 36 N -0.141 3.661
LH2_Sphaeroides.pdb #1.1/A BCL 101 CED LH2_Sphaeroides.pdb #1.1/J ALA 36 N -0.141 3.661
LH2_Sphaeroides.pdb #1.2/A BCL 101 CBB LH2_Sphaeroides.pdb #1.2/A TYR 45 OH -0.145 3.485
LH2_Sphaeroides.pdb #1.1/A BCL 101 CBB LH2_Sphaeroides.pdb #1.1/A TYR 45 OH -0.145 3.485
LH2_Sphaeroides.pdb #1.2/A BCL 101 O1A LH2_Sphaeroides.pdb #1.2/A SER 27 CB -0.146 3.446
LH2_Sphaeroides.pdb #1.1/A BCL 101 O1A LH2_Sphaeroides.pdb #1.1/A SER 27 CB -0.146 3.446
LH2_Sphaeroides.pdb #1.2/A BCL 101 OBB LH2_Sphaeroides.pdb #1.2/A TYR 45 CE1 -0.148 3.328
LH2_Sphaeroides.pdb #1.1/A BCL 101 OBB LH2_Sphaeroides.pdb #1.1/A TYR 45 CE1 -0.148 3.328
LH2_Sphaeroides.pdb #1.2/A BCL 101 CMD LH2_Sphaeroides.pdb #1.2/J HIS 40 CA -0.157 3.917
LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD LH2_Sphaeroides.pdb #1.1/J HIS 40 CA -0.157 3.917
LH2_Sphaeroides.pdb #1.2/A BCL 101 NB LH2_Sphaeroides.pdb #1.2/A HIS 31 NE2 -0.157 3.037
LH2_Sphaeroides.pdb #1.1/A BCL 101 NB LH2_Sphaeroides.pdb #1.1/A HIS 31 NE2 -0.157 3.037
LH2_Sphaeroides.pdb #1.2/K BCL 101 CMD LH2_Sphaeroides.pdb #1.2/B ILE 30 CG2 -0.159 3.919
LH2_Sphaeroides.pdb #1.1/K BCL 101 CMD LH2_Sphaeroides.pdb #1.1/B ILE 30 CG2 -0.159 3.919
LH2_Sphaeroides.pdb #1.2/A BCL 101 CBC LH2_Sphaeroides.pdb #1.2/A VAL 34 CB -0.171 3.931
LH2_Sphaeroides.pdb #1.1/A BCL 101 CBC LH2_Sphaeroides.pdb #1.1/A VAL 34 CB -0.171 3.931
LH2_Sphaeroides.pdb #1.2/A BCL 101 CAB LH2_Sphaeroides.pdb #1.2/A TYR 45 OH -0.178 3.248
LH2_Sphaeroides.pdb #1.1/A BCL 101 CAB LH2_Sphaeroides.pdb #1.1/A TYR 45 OH -0.178 3.248
LH2_Sphaeroides.pdb #1.2/A BCL 101 CED LH2_Sphaeroides.pdb #1.2/J ALA 36 CA -0.185 3.945
LH2_Sphaeroides.pdb #1.1/A BCL 101 CED LH2_Sphaeroides.pdb #1.1/J ALA 36 CA -0.185 3.945
LH2_Sphaeroides.pdb #1.2/K BCL 101 CHA LH2_Sphaeroides.pdb #1.2/K HIS 40 CE1 -0.187 3.557
LH2_Sphaeroides.pdb #1.1/K BCL 101 CHA LH2_Sphaeroides.pdb #1.1/K HIS 40 CE1 -0.187 3.557
LH2_Sphaeroides.pdb #1.2/A BCL 101 CMB LH2_Sphaeroides.pdb #1.2/B ILE 30 CD1 -0.188 3.948
LH2_Sphaeroides.pdb #1.1/A BCL 101 CMB LH2_Sphaeroides.pdb #1.1/B ILE 30 CD1 -0.188 3.948
LH2_Sphaeroides.pdb #1.2/A BCL 101 CED LH2_Sphaeroides.pdb #1.2/J PHE 32 CE1 -0.192 3.832
LH2_Sphaeroides.pdb #1.1/A BCL 101 CED LH2_Sphaeroides.pdb #1.1/J PHE 32 CE1 -0.192 3.832
LH2_Sphaeroides.pdb #1.2/K BCL 101 O2D LH2_Sphaeroides.pdb #1.2/K PHE 32 CE1 -0.193 3.413
LH2_Sphaeroides.pdb #1.1/K BCL 101 O2D LH2_Sphaeroides.pdb #1.1/K PHE 32 CE1 -0.193 3.413
LH2_Sphaeroides.pdb #1.2/A BCL 101 CHC LH2_Sphaeroides.pdb #1.2/A HIS 31 CD2 -0.197 3.717
LH2_Sphaeroides.pdb #1.1/A BCL 101 CHC LH2_Sphaeroides.pdb #1.1/A HIS 31 CD2 -0.197 3.717
LH2_Sphaeroides.pdb #1.2/A BCL 101 CGA LH2_Sphaeroides.pdb #1.2/A SER 27 CB -0.198 3.688
LH2_Sphaeroides.pdb #1.1/A BCL 101 CGA LH2_Sphaeroides.pdb #1.1/A SER 27 CB -0.198 3.688
LH2_Sphaeroides.pdb #1.2/A BCL 101 CAC LH2_Sphaeroides.pdb #1.2/A TRP 40 CH2 -0.200 3.840
LH2_Sphaeroides.pdb #1.1/A BCL 101 CAC LH2_Sphaeroides.pdb #1.1/A TRP 40 CH2 -0.200 3.840
LH2_Sphaeroides.pdb #1.2/K BCL 101 NC LH2_Sphaeroides.pdb #1.2/K HIS 40 CD2 -0.221 3.621
LH2_Sphaeroides.pdb #1.1/K BCL 101 NC LH2_Sphaeroides.pdb #1.1/K HIS 40 CD2 -0.221 3.621
LH2_Sphaeroides.pdb #1.2/A BCL 101 CED LH2_Sphaeroides.pdb #1.2/J ALA 36 CB -0.225 3.985
LH2_Sphaeroides.pdb #1.1/A BCL 101 CED LH2_Sphaeroides.pdb #1.1/J ALA 36 CB -0.225 3.985
LH2_Sphaeroides.pdb #1.2/K BCL 101 CED LH2_Sphaeroides.pdb #1.2/K PHE 32 CE1 -0.227 3.867
LH2_Sphaeroides.pdb #1.1/K BCL 101 CED LH2_Sphaeroides.pdb #1.1/K PHE 32 CE1 -0.227 3.867
LH2_Sphaeroides.pdb #1.2/K BCL 101 CMC LH2_Sphaeroides.pdb #1.2/K TRP 49 CD1 -0.227 3.867
LH2_Sphaeroides.pdb #1.1/K BCL 101 CMC LH2_Sphaeroides.pdb #1.1/K TRP 49 CD1 -0.227 3.867
LH2_Sphaeroides.pdb #1.2/A BCL 101 CED LH2_Sphaeroides.pdb #1.2/J PHE 32 O -0.239 3.539
LH2_Sphaeroides.pdb #1.1/A BCL 101 CED LH2_Sphaeroides.pdb #1.1/J PHE 32 O -0.239 3.539
LH2_Sphaeroides.pdb #1.2/K BCL 101 C1A LH2_Sphaeroides.pdb #1.2/K HIS 40 CE1 -0.258 3.628
LH2_Sphaeroides.pdb #1.1/K BCL 101 C1A LH2_Sphaeroides.pdb #1.1/K HIS 40 CE1 -0.258 3.628
LH2_Sphaeroides.pdb #1.2/K BCL 101 NC LH2_Sphaeroides.pdb #1.2/K HIS 40 NE2 -0.259 3.139
LH2_Sphaeroides.pdb #1.1/K BCL 101 NC LH2_Sphaeroides.pdb #1.1/K HIS 40 NE2 -0.259 3.139
LH2_Sphaeroides.pdb #1.2/A BCL 101 C2D LH2_Sphaeroides.pdb #1.2/J ALA 39 CB -0.259 3.749
LH2_Sphaeroides.pdb #1.1/A BCL 101 C2D LH2_Sphaeroides.pdb #1.1/J ALA 39 CB -0.259 3.749
LH2_Sphaeroides.pdb #1.2/A BCL 101 CED LH2_Sphaeroides.pdb #1.2/J PHE 32 CD2 -0.262 3.902
LH2_Sphaeroides.pdb #1.1/A BCL 101 CED LH2_Sphaeroides.pdb #1.1/J PHE 32 CD2 -0.262 3.902
LH2_Sphaeroides.pdb #1.2/K BCL 101 OBD LH2_Sphaeroides.pdb #1.2/B SER 27 OG -0.269 2.749
LH2_Sphaeroides.pdb #1.1/K BCL 101 OBD LH2_Sphaeroides.pdb #1.1/B SER 27 OG -0.269 2.749
LH2_Sphaeroides.pdb #1.2/A BCL 101 CMD LH2_Sphaeroides.pdb #1.2/J ALA 39 C -0.270 3.760
LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD LH2_Sphaeroides.pdb #1.1/J ALA 39 C -0.270 3.760
LH2_Sphaeroides.pdb #1.2/K BCL 101 CMC LH2_Sphaeroides.pdb #1.2/K TRP 49 CE2 -0.290 3.780
LH2_Sphaeroides.pdb #1.1/K BCL 101 CMC LH2_Sphaeroides.pdb #1.1/K TRP 49 CE2 -0.290 3.780
LH2_Sphaeroides.pdb #1.2/K BCL 101 CMD LH2_Sphaeroides.pdb #1.2/B HIS 31 CG -0.292 3.782
LH2_Sphaeroides.pdb #1.1/K BCL 101 CMD LH2_Sphaeroides.pdb #1.1/B HIS 31 CG -0.292 3.782
LH2_Sphaeroides.pdb #1.2/K BCL 101 OBB LH2_Sphaeroides.pdb #1.2/A TYR 44 CZ -0.293 3.323
LH2_Sphaeroides.pdb #1.1/K BCL 101 OBB LH2_Sphaeroides.pdb #1.1/A TYR 44 CZ -0.293 3.323
LH2_Sphaeroides.pdb #1.2/A BCL 101 CAC LH2_Sphaeroides.pdb #1.2/A VAL 34 CG1 -0.296 4.056
LH2_Sphaeroides.pdb #1.1/A BCL 101 CAC LH2_Sphaeroides.pdb #1.1/A VAL 34 CG1 -0.296 4.056
LH2_Sphaeroides.pdb #1.2/A BCL 101 C4B LH2_Sphaeroides.pdb #1.2/A HIS 31 CD2 -0.304 3.674
LH2_Sphaeroides.pdb #1.1/A BCL 101 C4B LH2_Sphaeroides.pdb #1.1/A HIS 31 CD2 -0.304 3.674
LH2_Sphaeroides.pdb #1.2/K BCL 101 NB LH2_Sphaeroides.pdb #1.2/K HIS 40 NE2 -0.305 3.185
LH2_Sphaeroides.pdb #1.1/K BCL 101 NB LH2_Sphaeroides.pdb #1.1/K HIS 40 NE2 -0.305 3.185
LH2_Sphaeroides.pdb #1.2/A BCL 101 CMD LH2_Sphaeroides.pdb #1.2/J ALA 39 O -0.311 3.611
LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD LH2_Sphaeroides.pdb #1.1/J ALA 39 O -0.311 3.611
LH2_Sphaeroides.pdb #1.2/A BCL 101 OBB LH2_Sphaeroides.pdb #1.2/A TYR 45 CZ -0.315 3.345
LH2_Sphaeroides.pdb #1.1/A BCL 101 OBB LH2_Sphaeroides.pdb #1.1/A TYR 45 CZ -0.315 3.345
LH2_Sphaeroides.pdb #1.2/A BCL 101 C1C LH2_Sphaeroides.pdb #1.2/A HIS 31 CD2 -0.317 3.687
LH2_Sphaeroides.pdb #1.1/A BCL 101 C1C LH2_Sphaeroides.pdb #1.1/A HIS 31 CD2 -0.317 3.687
LH2_Sphaeroides.pdb #1.2/K BCL 101 NB LH2_Sphaeroides.pdb #1.2/K HIS 40 CD2 -0.321 3.721
LH2_Sphaeroides.pdb #1.1/K BCL 101 NB LH2_Sphaeroides.pdb #1.1/K HIS 40 CD2 -0.321 3.721
LH2_Sphaeroides.pdb #1.2/K BCL 101 O1A LH2_Sphaeroides.pdb #1.2/K ALA 36 CB -0.323 3.623
LH2_Sphaeroides.pdb #1.1/K BCL 101 O1A LH2_Sphaeroides.pdb #1.1/K ALA 36 CB -0.323 3.623
LH2_Sphaeroides.pdb #1.2/K BCL 101 CBC LH2_Sphaeroides.pdb #1.2/K TRP 49 CE3 -0.326 3.966
LH2_Sphaeroides.pdb #1.1/K BCL 101 CBC LH2_Sphaeroides.pdb #1.1/K TRP 49 CE3 -0.326 3.966
LH2_Sphaeroides.pdb #1.2/A BCL 101 NC LH2_Sphaeroides.pdb #1.2/A HIS 31 NE2 -0.333 3.213
LH2_Sphaeroides.pdb #1.1/A BCL 101 NC LH2_Sphaeroides.pdb #1.1/A HIS 31 NE2 -0.333 3.213
LH2_Sphaeroides.pdb #1.2/A BCL 101 CBC LH2_Sphaeroides.pdb #1.2/A LEU 41 CD2 -0.335 4.095
LH2_Sphaeroides.pdb #1.1/A BCL 101 CBC LH2_Sphaeroides.pdb #1.1/A LEU 41 CD2 -0.335 4.095
LH2_Sphaeroides.pdb #1.2/A BCL 101 CGD LH2_Sphaeroides.pdb #1.2/J ALA 36 CA -0.338 3.828
LH2_Sphaeroides.pdb #1.1/A BCL 101 CGD LH2_Sphaeroides.pdb #1.1/J ALA 36 CA -0.338 3.828
LH2_Sphaeroides.pdb #1.2/K BCL 101 CED LH2_Sphaeroides.pdb #1.2/B SER 27 N -0.339 3.859
LH2_Sphaeroides.pdb #1.1/K BCL 101 CED LH2_Sphaeroides.pdb #1.1/B SER 27 N -0.339 3.859
LH2_Sphaeroides.pdb #1.2/A BCL 101 CMD LH2_Sphaeroides.pdb #1.2/J HIS 40 N -0.340 3.860
LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD LH2_Sphaeroides.pdb #1.1/J HIS 40 N -0.340 3.860
LH2_Sphaeroides.pdb #1.2/A BCL 101 CMD LH2_Sphaeroides.pdb #1.2/J ALA 39 CB -0.346 4.106
LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD LH2_Sphaeroides.pdb #1.1/J ALA 39 CB -0.346 4.106
LH2_Sphaeroides.pdb #1.2/A BCL 101 ND LH2_Sphaeroides.pdb #1.2/A HIS 31 CE1 -0.350 3.750
LH2_Sphaeroides.pdb #1.1/A BCL 101 ND LH2_Sphaeroides.pdb #1.1/A HIS 31 CE1 -0.350 3.750
LH2_Sphaeroides.pdb #1.2/K BCL 101 CBC LH2_Sphaeroides.pdb #1.2/B TRP 40 CZ2 -0.351 3.991
LH2_Sphaeroides.pdb #1.1/K BCL 101 CBC LH2_Sphaeroides.pdb #1.1/B TRP 40 CZ2 -0.351 3.991
LH2_Sphaeroides.pdb #1.2/A BCL 101 CGA LH2_Sphaeroides.pdb #1.2/A SER 27 OG -0.352 3.422
LH2_Sphaeroides.pdb #1.1/A BCL 101 CGA LH2_Sphaeroides.pdb #1.1/A SER 27 OG -0.352 3.422
LH2_Sphaeroides.pdb #1.2/K BCL 101 CBC LH2_Sphaeroides.pdb #1.2/K TRP 49 CG -0.352 3.842
LH2_Sphaeroides.pdb #1.1/K BCL 101 CBC LH2_Sphaeroides.pdb #1.1/K TRP 49 CG -0.352 3.842
LH2_Sphaeroides.pdb #1.2/A BCL 101 C1A LH2_Sphaeroides.pdb #1.2/A HIS 31 CE1 -0.359 3.729
LH2_Sphaeroides.pdb #1.1/A BCL 101 C1A LH2_Sphaeroides.pdb #1.1/A HIS 31 CE1 -0.359 3.729
LH2_Sphaeroides.pdb #1.2/A BCL 101 CED LH2_Sphaeroides.pdb #1.2/J PHE 32 CD1 -0.362 4.002
LH2_Sphaeroides.pdb #1.1/A BCL 101 CED LH2_Sphaeroides.pdb #1.1/J PHE 32 CD1 -0.362 4.002
LH2_Sphaeroides.pdb #1.2/A BCL 101 O1D LH2_Sphaeroides.pdb #1.2/J MET 35 CG -0.363 3.663
LH2_Sphaeroides.pdb #1.1/A BCL 101 O1D LH2_Sphaeroides.pdb #1.1/J MET 35 CG -0.363 3.663
LH2_Sphaeroides.pdb #1.2/K BCL 101 C2C LH2_Sphaeroides.pdb #1.2/K TRP 49 NE1 -0.365 3.885
LH2_Sphaeroides.pdb #1.1/K BCL 101 C2C LH2_Sphaeroides.pdb #1.1/K TRP 49 NE1 -0.365 3.885
LH2_Sphaeroides.pdb #1.2/K BCL 101 C2C LH2_Sphaeroides.pdb #1.2/K TRP 49 CD2 -0.365 3.855
LH2_Sphaeroides.pdb #1.1/K BCL 101 C2C LH2_Sphaeroides.pdb #1.1/K TRP 49 CD2 -0.365 3.855
LH2_Sphaeroides.pdb #1.2/K BCL 101 CAC LH2_Sphaeroides.pdb #1.2/K ALA 43 CB -0.365 4.125
LH2_Sphaeroides.pdb #1.1/K BCL 101 CAC LH2_Sphaeroides.pdb #1.1/K ALA 43 CB -0.365 4.125
LH2_Sphaeroides.pdb #1.2/A BCL 101 O2D LH2_Sphaeroides.pdb #1.2/J PHE 32 CZ -0.367 3.587
LH2_Sphaeroides.pdb #1.1/A BCL 101 O2D LH2_Sphaeroides.pdb #1.1/J PHE 32 CZ -0.367 3.587
LH2_Sphaeroides.pdb #1.2/A BCL 101 O1D LH2_Sphaeroides.pdb #1.2/J ALA 36 CA -0.373 3.673
LH2_Sphaeroides.pdb #1.1/A BCL 101 O1D LH2_Sphaeroides.pdb #1.1/J ALA 36 CA -0.373 3.673
LH2_Sphaeroides.pdb #1.2/K BCL 101 C4D LH2_Sphaeroides.pdb #1.2/B ILE 30 CD1 -0.377 3.867
LH2_Sphaeroides.pdb #1.1/K BCL 101 C4D LH2_Sphaeroides.pdb #1.1/B ILE 30 CD1 -0.377 3.867
LH2_Sphaeroides.pdb #1.2/K BCL 101 CED LH2_Sphaeroides.pdb #1.2/B SER 27 CA -0.387 4.147
LH2_Sphaeroides.pdb #1.1/K BCL 101 CED LH2_Sphaeroides.pdb #1.1/B SER 27 CA -0.387 4.147
236 contacts
> select #1/A-B:11-38/J-K:20-47 &backbone &~@CA
672 atoms, 440 bonds, 224 residues, 2 models selected
> hide sel atoms
> select #1/A-B/J-K
4258 atoms, 4250 bonds, 402 pseudobonds, 532 residues, 8 models selected
> select #1/A-B/J-K &protein
2900 atoms, 2976 bonds, 282 pseudobonds, 388 residues, 6 models selected
> color sel bychain
> color sel byhetero
> select clear
> hide #!4 models
> show #!4 models
> select #1/B:7-9
58 atoms, 60 bonds, 6 residues, 2 models selected
> select #1/B:6-10
88 atoms, 90 bonds, 2 pseudobonds, 10 residues, 4 models selected
> hide sel atoms
> select #1/B:21
12 atoms, 10 bonds, 2 residues, 2 models selected
> select #1/B:21@CA
2 atoms, 2 residues, 2 models selected
> show sel atoms
> hide #!4 models
> select #1/B:23-25@CA
6 atoms, 6 residues, 2 models selected
> show sel atoms
> show #!4 models
> save "/Users/drornoy/Desktop/LH2 helices/LH2 5hB design p_ap_p_p_ap Chl prot
> interactions.cxs"
> select #1/A:101/K:101 &~@C[1][0123456789],C[0123456789],C20 :<12
> /A-B:11-38/J-K:20-47
Nothing selected
> select #1/A:101/K:101 :<12 /A-B:11-38/J-K:20-47
1530 atoms, 1550 bonds, 248 pseudobonds, 216 residues, 6 models selected
> select #1/A:101/K:101&~@C[1][0123456789],C[0123456789],C20 :<12
> /A-B:11-38/J-K:20-47
Nothing selected
> select #1/A:101/K:101&~@C[1][0123456789],C[0123456789],C20
184 atoms, 200 bonds, 16 pseudobonds, 4 residues, 4 models selected
> name frozen ChlideX2 sel
> select ChlideX2 :<12 /A-B:11-38/J-K:20-47
1218 atoms, 1232 bonds, 202 pseudobonds, 174 residues, 6 models selected
> select ChlideX2 :<10 /A-B:11-38/J-K:20-47
1126 atoms, 1134 bonds, 180 pseudobonds, 162 residues, 6 models selected
> select ChlideX2 :<9 /A-B:11-38/J-K:20-47
1070 atoms, 1076 bonds, 166 pseudobonds, 154 residues, 6 models selected
> select ChlideX2
184 atoms, 200 bonds, 16 pseudobonds, 4 residues, 4 models selected
> show sel atoms
> select ChlideX2 :<6 /A-B:11-38/J-K:20-47
498 atoms, 472 bonds, 50 pseudobonds, 72 residues, 6 models selected
> save "/Users/drornoy/Desktop/LH2 helices/LH2 5hB design p_ap_p_p_ap Chl prot
> interactions.cxs"
——— End of log from Wed Aug 16 16:38:24 2023 ———
opened ChimeraX session
> select #4/E
140 atoms, 139 bonds, 28 residues, 1 model selected
> style sel ball
Changed 140 atom styles
> select #4/E@N,O,C,H
112 atoms, 83 bonds, 28 residues, 1 model selected
> hide sel atoms
> select #1.1/A:101
66 atoms, 70 bonds, 4 pseudobonds, 1 residue, 2 models selected
> select #1.1/A:101/J:20-47
272 atoms, 279 bonds, 34 pseudobonds, 29 residues, 4 models selected
> ui tool show Clashes
> clashes sel restrict #1.1/A:101 ignoreHiddenModels true select true color
> #fffb00 reveal true
No clashes
> select #1.1/J:20-47
206 atoms, 209 bonds, 30 pseudobonds, 28 residues, 3 models selected
> ui tool show Contacts
> contacts sel restrict #1.1/A:101 resSeparation 5 interModel false
> ignoreHiddenModels true select true color #00fa92 reveal true log true
Allowed overlap: -0.4
H-bond overlap reduction: 0.4
Ignore contacts between atoms separated by 4 bonds or less
Ignore contacts between atoms in residues less than 5 apart in sequence
Detect intra-residue contacts: False
Detect intra-molecule contacts: True
32 contacts
atom1 atom2 overlap distance
LH2_Sphaeroides.pdb #1.1/J ALA 39 CB LH2_Sphaeroides.pdb #1.1/A BCL 101 C3D 0.102 3.388
LH2_Sphaeroides.pdb #1.1/J MET 35 CG LH2_Sphaeroides.pdb #1.1/A BCL 101 CED 0.098 3.662
LH2_Sphaeroides.pdb #1.1/J ALA 39 CB LH2_Sphaeroides.pdb #1.1/A BCL 101 CAD -0.003 3.493
LH2_Sphaeroides.pdb #1.1/J MET 35 CE LH2_Sphaeroides.pdb #1.1/A BCL 101 CMA -0.027 3.787
LH2_Sphaeroides.pdb #1.1/J HIS 40 CE1 LH2_Sphaeroides.pdb #1.1/A BCL 101 OBD -0.046 3.226
LH2_Sphaeroides.pdb #1.1/J ALA 39 CB LH2_Sphaeroides.pdb #1.1/A BCL 101 O1D -0.048 3.348
LH2_Sphaeroides.pdb #1.1/J PHE 32 CZ LH2_Sphaeroides.pdb #1.1/A BCL 101 CED -0.051 3.691
LH2_Sphaeroides.pdb #1.1/J MET 35 CB LH2_Sphaeroides.pdb #1.1/A BCL 101 CED -0.080 3.840
LH2_Sphaeroides.pdb #1.1/J ALA 36 CB LH2_Sphaeroides.pdb #1.1/A BCL 101 OBD -0.083 3.383
LH2_Sphaeroides.pdb #1.1/J PHE 32 CE2 LH2_Sphaeroides.pdb #1.1/A BCL 101 CED -0.085 3.725
LH2_Sphaeroides.pdb #1.1/J MET 35 SD LH2_Sphaeroides.pdb #1.1/A BCL 101 CED -0.094 3.744
LH2_Sphaeroides.pdb #1.1/J HIS 40 ND1 LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD -0.104 3.624
LH2_Sphaeroides.pdb #1.1/J ALA 36 CA LH2_Sphaeroides.pdb #1.1/A BCL 101 OBD -0.115 3.415
LH2_Sphaeroides.pdb #1.1/J HIS 40 CE1 LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD -0.117 3.757
LH2_Sphaeroides.pdb #1.1/J ALA 43 CB LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD -0.123 3.883
LH2_Sphaeroides.pdb #1.1/J ALA 36 N LH2_Sphaeroides.pdb #1.1/A BCL 101 CED -0.141 3.661
LH2_Sphaeroides.pdb #1.1/J HIS 40 CA LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD -0.157 3.917
LH2_Sphaeroides.pdb #1.1/J ALA 36 CA LH2_Sphaeroides.pdb #1.1/A BCL 101 CED -0.185 3.945
LH2_Sphaeroides.pdb #1.1/J PHE 32 CE1 LH2_Sphaeroides.pdb #1.1/A BCL 101 CED -0.192 3.832
LH2_Sphaeroides.pdb #1.1/J ALA 36 CB LH2_Sphaeroides.pdb #1.1/A BCL 101 CED -0.225 3.985
LH2_Sphaeroides.pdb #1.1/J PHE 32 O LH2_Sphaeroides.pdb #1.1/A BCL 101 CED -0.239 3.539
LH2_Sphaeroides.pdb #1.1/J ALA 39 CB LH2_Sphaeroides.pdb #1.1/A BCL 101 C2D -0.259 3.749
LH2_Sphaeroides.pdb #1.1/J PHE 32 CD2 LH2_Sphaeroides.pdb #1.1/A BCL 101 CED -0.262 3.902
LH2_Sphaeroides.pdb #1.1/J ALA 39 C LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD -0.270 3.760
LH2_Sphaeroides.pdb #1.1/J ALA 39 O LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD -0.311 3.611
LH2_Sphaeroides.pdb #1.1/J ALA 36 CA LH2_Sphaeroides.pdb #1.1/A BCL 101 CGD -0.338 3.828
LH2_Sphaeroides.pdb #1.1/J HIS 40 N LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD -0.340 3.860
LH2_Sphaeroides.pdb #1.1/J ALA 39 CB LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD -0.346 4.106
LH2_Sphaeroides.pdb #1.1/J PHE 32 CD1 LH2_Sphaeroides.pdb #1.1/A BCL 101 CED -0.362 4.002
LH2_Sphaeroides.pdb #1.1/J MET 35 CG LH2_Sphaeroides.pdb #1.1/A BCL 101 O1D -0.363 3.663
LH2_Sphaeroides.pdb #1.1/J PHE 32 CZ LH2_Sphaeroides.pdb #1.1/A BCL 101 O2D -0.367 3.587
LH2_Sphaeroides.pdb #1.1/J ALA 36 CA LH2_Sphaeroides.pdb #1.1/A BCL 101 O1D -0.373 3.673
32 contacts
> close #2-3
> hide #!1.2 models
> show #!1.2 models
> hide #!1.2 models
> show #!1.2 models
> select add #1.2
9531 atoms, 9495 bonds, 325 pseudobonds, 1191 residues, 5 models selected
> select subtract #1.2
31 atoms, 7 residues, 1 model selected
> hide #!1.2 models
> show #!1.2 models
> select add #1.2
9531 atoms, 9495 bonds, 325 pseudobonds, 1191 residues, 5 models selected
> hide #!1.2 models
> show #!1.2 models
> hide #!1.1 models
> show #!1.1 models
> hide #!1.1 models
> show #!1.1 models
> select subtract #1.2
31 atoms, 7 residues, 1 model selected
> hide #!1.1 models
> show #!1.1 models
> hide #!1.1 models
> show #!1.1 models
> hide #!1.1 models
> show #!1.1 models
> select #1.1
9500 atoms, 9495 bonds, 350 pseudobonds, 1184 residues, 5 models selected
> select #1.2
9500 atoms, 9495 bonds, 325 pseudobonds, 1184 residues, 4 models selected
> select #1.1
9500 atoms, 9495 bonds, 350 pseudobonds, 1184 residues, 5 models selected
> show sel cartoons
> hide sel cartoons
> select #1.2
9500 atoms, 9495 bonds, 325 pseudobonds, 1184 residues, 4 models selected
> show sel cartoons
> select #1.2
9500 atoms, 9495 bonds, 217 pseudobonds, 1184 residues, 3 models selected
> hide sel cartoons
> close #1.2
> view
> help help:user
> combine #1.1 modelID 2
Expected a keyword
> combine #1.1
> hide #!1 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> close #1
> rename #2 LH2_Sphaeroides.pdb
> hide #!4 models
> select #2/A-B/J-K
2129 atoms, 2125 bonds, 228 pseudobonds, 266 residues, 5 models selected
> split #2 atoms /A-B/J-K
Split LH2_Sphaeroides.pdb (#2) into 2 models
Chain information for LH2_Sphaeroides.pdb 1 #2.1
---
Chain | Description
A B | No description available
J K | No description available
Chain information for LH2_Sphaeroides.pdb 2 #2.2
---
Chain | Description
C D E F G H I | No description available
L M N O P Q R | No description available
> hide #!2.2 models
> hide #!2.1 models
> show #!2.1 models
> show #!4 models
> save "/Users/drornoy/Desktop/LH2 helices/LH2 5hB design p_ap_p_p_ap
> refine.cxs"
> help help:user
> select #4/A:21@CA,CB,CG,CD2,C4D,ND1,NE2
6 atoms, 5 bonds, 1 residue, 1 model selected
> select #4/A:21@CA,CB,CG,CD2,CE1,ND1,NE2
7 atoms, 7 bonds, 1 residue, 1 model selected
> align #4/A:21@CA,CB,CG,CD2,CE1,ND1,NE2 toAtoms #2.1/A:31 move atoms
> matchAtomNames
Missing "matchAtomNames" keyword's argument
> align #4/A:21@CA,CB,CG,CD2,CE1,ND1,NE2 toAtoms #2.1/A:31 move atoms
> matchAtomNames true
Pairing dropped 0 atoms and 3 reference atoms
RMSD between 7 atom pairs is 0.046 angstroms
> select up
11 atoms, 11 bonds, 1 residue, 1 model selected
> select #4/D#2.1/K
613 atoms, 608 bonds, 70 pseudobonds, 94 residues, 6 models selected
> select #4/D@CA #2.1/K@CA
76 atoms, 54 pseudobonds, 76 residues, 4 models selected
> align #4/D@CA toAtoms #2.1/K@CA move chains matchAtomNames true
Pairing dropped 0 atoms and 20 reference atoms
RMSD between 28 atom pairs is 4.361 angstroms
> align #4/D@CA toAtoms #2.1/K:20-47@CA move chains matchAtomNames true
RMSD between 28 atom pairs is 0.972 angstroms
> align #4/D:21@CA,CB,CG,CD2,CE1,ND1,NE2 toAtoms #2.1/K:40 move atoms
> matchAtomNames true
Pairing dropped 0 atoms and 3 reference atoms
RMSD between 7 atom pairs is 0.067 angstroms
> select #4:1@N,C,CA
15 atoms, 10 bonds, 5 residues, 1 model selected
> show sel atoms
> select #4:1@N,C
10 atoms, 5 residues, 1 model selected
> select #4:1@C
5 atoms, 5 residues, 1 model selected
> hide sel atoms
> select #4:28@C,O
10 atoms, 5 bonds, 5 residues, 1 model selected
> show sel atoms
> select #4/D:28@C#2.1/K:48@N
2 atoms, 2 residues, 2 models selected
> ui tool show Distances
> distance #4/D:28@C #2.1/K:48@N
Distance between CCCP LH2 5HB p_ap_p_p_ap.pdb #4/D GLY 28 C and
LH2_Sphaeroides.pdb 1 #2.1/K PRO 48 N: 3.877Å
> select #4/E:1@N#2.1/K:49@C
2 atoms, 2 residues, 2 models selected
> distance #4/E:1@N #2.1/K:49@C
Distance between CCCP LH2 5HB p_ap_p_p_ap.pdb #4/E GLY 1 N and
LH2_Sphaeroides.pdb 1 #2.1/K TRP 49 C: 12.120Å
> select #4/E:28@C#4/C:1@N
2 atoms, 2 residues, 1 model selected
> select #4/E:28@D#4/C:1@N
1 atom, 1 residue, 1 model selected
> select #4/E:28@D#4/D:1@N
1 atom, 1 residue, 1 model selected
> select #4/E:28@C#4/D:1@N
2 atoms, 2 residues, 1 model selected
> distance #4/D:1@N #4/E:28@C
Distance between CCCP LH2 5HB p_ap_p_p_ap.pdb #4/D GLY 1 N and /E GLY 28 C:
15.336Å
> ~distance #4/D:1@N #4/E:28@C
> select #4/E:28@C#4/C:1@N
2 atoms, 2 residues, 1 model selected
> distance #4/C:1@N #4/E:28@C
Distance between CCCP LH2 5HB p_ap_p_p_ap.pdb #4/C GLY 1 N and /E GLY 28 C:
8.966Å
> select #2.1/B:41
8 atoms, 7 bonds, 1 residue, 1 model selected
> show sel atoms
> hide sel atoms
> select #4/B:1@N#2.1/B:40@C
2 atoms, 2 residues, 2 models selected
> distance #4/B:1@N #2.1/B:40@C
Distance between CCCP LH2 5HB p_ap_p_p_ap.pdb #4/B GLY 1 N and
LH2_Sphaeroides.pdb 1 #2.1/B TRP 40 C: 4.651Å
> select #4/B:28@C#4/A:1@N
2 atoms, 2 residues, 1 model selected
> distance #4/A:1@N #4/B:28@C
Distance between CCCP LH2 5HB p_ap_p_p_ap.pdb #4/A GLY 1 N and /B GLY 28 C:
10.907Å
> select #4/A:23-28
30 atoms, 29 bonds, 5 pseudobonds, 6 residues, 2 models selected
> show sel atoms
> select #4/A:23-28#2.1/A:33-38
71 atoms, 69 bonds, 8 pseudobonds, 12 residues, 4 models selected
> show sel atoms
> save "/Users/drornoy/Desktop/LH2 helices/LH2 5hB design p_ap_p_p_ap refine
> and connect.cxs"
> align #4/A:23-28 toAtoms #2.1/A:33-38 matchAtomNames true move atoms
Pairing dropped 6 atoms and 17 reference atoms
RMSD between 24 atom pairs is 0.630 angstroms
> select #4/A:23-28@N,C,O,H
24 atoms, 17 bonds, 6 residues, 1 model selected
> hide sel atoms
> select #4/A:28@C,O
2 atoms, 1 bond, 1 residue, 1 model selected
> show sel atoms
> select #4/A:28
5 atoms, 4 bonds, 1 residue, 1 model selected
> delete atoms sel
> delete bonds sel
> select #4/A:27@C,O
2 atoms, 1 bond, 1 residue, 1 model selected
> show sel atoms
> select #4/A:27@C#2.1:38@N
5 atoms, 5 residues, 2 models selected
Exactly two atoms must be selected!
> select #4/A:27@C#2.1/A:38@N
2 atoms, 2 residues, 2 models selected
> distance #4/A:27@C #2.1/A:38@N
Distance between CCCP LH2 5HB p_ap_p_p_ap.pdb #4/A GLY 27 C and
LH2_Sphaeroides.pdb 1 #2.1/A THR 38 N: 1.023Å
> align #4/A:27 toAtoms #2.1/A:37 matchAtomNames true move atoms
Pairing dropped 1 atoms and 3 reference atoms
RMSD between 4 atom pairs is 0.258 angstroms
> align #4/A:27@CA,C,O toAtoms #2.1/A:37 matchAtomNames true move atoms
Pairing dropped 0 atoms and 4 reference atoms
RMSD between 3 atom pairs is 0.014 angstroms
> ~distance #4/E:1@N #2.1/K:49@C
> ~distance #4/C:1@N #4/E:28@C
> select up
12 atoms, 10 bonds, 2 residues, 2 models selected
> select #4/C:28@C#4/E:1@N
2 atoms, 2 residues, 1 model selected
> distance #4/C:28@C #4/E:1@N
Distance between CCCP LH2 5HB p_ap_p_p_ap.pdb #4/C GLY 28 C and /E GLY 1 N:
14.583Å
> select #4/D:1@N#4/E:28@C
2 atoms, 2 residues, 1 model selected
> distance #4/D:1@N #4/E:28@C
Distance between CCCP LH2 5HB p_ap_p_p_ap.pdb #4/D GLY 1 N and /E GLY 28 C:
15.336Å
> ~distance #4/D:28@C #2.1/K:48@N
> select #2.1/K:48
7 atoms, 7 bonds, 1 residue, 1 model selected
> hide sel atoms
> select #2.1/K:48
7 atoms, 7 bonds, 1 residue, 1 model selected
> show sel atoms
> hide sel atoms
> select #2.1/K:49
14 atoms, 15 bonds, 1 residue, 1 model selected
> select #2.1/K:50
8 atoms, 7 bonds, 1 residue, 1 model selected
> show sel atoms
> select #2.1/K:50-55
13 atoms, 12 bonds, 2 residues, 1 model selected
> show sel atoms
> select #2.1/K:50-59
13 atoms, 12 bonds, 2 residues, 1 model selected
> show sel atoms
> select #2.1/K:52
Nothing selected
> select #2.1/K:48-49
21 atoms, 23 bonds, 2 residues, 1 model selected
> show sel atoms
> select #2.1/K:47-49
28 atoms, 30 bonds, 1 pseudobond, 3 residues, 2 models selected
> ~distance #4/D:1@N #4/E:28@C
> ~distance #4/C:28@C #4/E:1@N
> select #2.1/B:38
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #2.1/B:39
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #2.1/B:38
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #2.1/B:38@N/A:45@C
2 atoms, 2 residues, 1 model selected
> select #2.1/B:39@N/A:45@C
2 atoms, 2 residues, 1 model selected
> distance #2.1/A:45@C #2.1/B:39@N
Distance between LH2_Sphaeroides.pdb 1 #2.1/A TYR 45 C and /B THR 39 N: 7.111Å
> ~distance #2.1/A:45@C #2.1/B:39@N
> hide #!1 models
> show #!1 models
> hide #!2 models
> select #4/B:1@N#4/D:28@C
2 atoms, 2 residues, 1 model selected
> distance #4/B:1@N #4/D:28@C
Distance between CCCP LH2 5HB p_ap_p_p_ap.pdb #4/B GLY 1 N and /D GLY 28 C:
13.085Å
> select #4/D:1@N#4/C:28@C
2 atoms, 2 residues, 1 model selected
> select #4/D:1@N#4/E:28@C
2 atoms, 2 residues, 1 model selected
> distance #4/D:1@N #4/E:28@C
Distance between CCCP LH2 5HB p_ap_p_p_ap.pdb #4/D GLY 1 N and /E GLY 28 C:
15.336Å
> select #4/E:1@N#4/C:28@C
2 atoms, 2 residues, 1 model selected
> distance #4/C:28@C #4/E:1@N
Distance between CCCP LH2 5HB p_ap_p_p_ap.pdb #4/C GLY 28 C and /E GLY 1 N:
14.583Å
> show #!2 models
> select #2.1/K@OXT#4/B:1@N
2 atoms, 2 residues, 2 models selected
> distance #4/B:1@N #2.1/K:51@OXT
Distance between CCCP LH2 5HB p_ap_p_p_ap.pdb #4/B GLY 1 N and
LH2_Sphaeroides.pdb 1 #2.1/K GLY 51 OXT: 13.347Å
> ~distance #4/B:1@N #4/D:28@C
> select #2.1/K:48@N#4/D:28@C
2 atoms, 2 residues, 2 models selected
> distance #4/D:28@C #2.1/K:48@N
Distance between CCCP LH2 5HB p_ap_p_p_ap.pdb #4/D GLY 28 C and
LH2_Sphaeroides.pdb 1 #2.1/K PRO 48 N: 3.877Å
> save "/Users/drornoy/Desktop/LH2 helices/LH2 5hB design p_ap_p_p_ap refine
> and connect.cxs"
> combine #2.1#4 Name combine 5HB
Expected a keyword
> combine #2.1#4
Remapping chain ID 'A' in CCCP LH2 5HB p_ap_p_p_ap.pdb #4 to 'F'
Remapping chain ID 'B' in CCCP LH2 5HB p_ap_p_p_ap.pdb #4 to 'G'
> hide #!4 models
> hide #!2 models
> select #3/B
590 atoms, 593 bonds, 47 pseudobonds, 67 residues, 4 models selected
> show #!4 models
> hide sel atoms
> hide #!4 models
> select #3/B/A:11-32
744 atoms, 750 bonds, 45 pseudobonds, 89 residues, 4 models selected
> hide sel atoms
> select #3/B/A:11-32/J
1207 atoms, 1212 bonds, 64 pseudobonds, 151 residues, 4 models selected
> select #3/A:11-45
260 atoms, 268 bonds, 11 pseudobonds, 35 residues, 2 models selected
> show sel atoms
> style sel stick
Changed 260 atom styles
> select #3/A:11-45/K:20-51
500 atoms, 514 bonds, 42 pseudobonds, 67 residues, 3 models selected
> show sel atoms
> style sel stick
Changed 500 atom styles
> select #3/A:11-45/K:20-51/J:20-47
706 atoms, 723 bonds, 38 pseudobonds, 95 residues, 3 models selected
> show sel atoms
> style sel stick
Changed 706 atom styles
> select #3/C/D/F/
Expected an objects specifier or a keyword
> select #3/C/D/F
429 atoms, 428 bonds, 80 pseudobonds, 83 residues, 2 models selected
> hide sel cartoons
> hide sel atoms
> delete atoms sel
> delete bonds sel
> show #!4 models
> ui tool show "Change Chain IDs"
> select #3/C/D/F
Nothing selected
> select #3/A
609 atoms, 608 bonds, 24 pseudobonds, 71 residues, 3 models selected
> select #3/A/B
1199 atoms, 1201 bonds, 46 pseudobonds, 138 residues, 3 models selected
> select #3/A
609 atoms, 608 bonds, 24 pseudobonds, 71 residues, 3 models selected
> ui tool show "Change Chain IDs"
> changechains sel C
Chain IDs of 71 residues changed
> select #3/J
463 atoms, 462 bonds, 17 pseudobonds, 62 residues, 3 models selected
> changechains sel A
Chain IDs of 62 residues changed
> select #3/D
Nothing selected
> select #3/B
590 atoms, 593 bonds, 20 pseudobonds, 67 residues, 3 models selected
> show sel cartoons
> hide sel cartoons
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!2 models
> hide #!2 models
> select #3/B
590 atoms, 593 bonds, 20 pseudobonds, 67 residues, 3 models selected
> delete atoms (#!3 & sel)
> delete bonds (#!3 & sel)
> select #3/B
Nothing selected
> show #!4 models
> hide #!4 models
> select #3/E
140 atoms, 139 bonds, 27 pseudobonds, 28 residues, 2 models selected
> changechains sel B
Chain IDs of 28 residues changed
> show #!4 models
> select #3/F
Nothing selected
> select #3/E
Nothing selected
> select #3/C
609 atoms, 608 bonds, 24 pseudobonds, 71 residues, 3 models selected
> changechains sel E
Chain IDs of 71 residues changed
> select #3/K
467 atoms, 462 bonds, 16 pseudobonds, 66 residues, 3 models selected
> changechains sel C
Chain IDs of 66 residues changed
> hide #!4 models
> select #3/G
142 atoms, 141 bonds, 27 pseudobonds, 28 residues, 2 models selected
> select #3/D
Nothing selected
> select #3/G
142 atoms, 141 bonds, 27 pseudobonds, 28 residues, 2 models selected
> changechains sel D
Chain IDs of 28 residues changed
> select #3/A-E
1821 atoms, 1812 bonds, 151 pseudobonds, 255 residues, 5 models selected
> save "/Users/drornoy/Desktop/LH2 helices/LH2 5hB combined.cxs"
> select #3 &~/A-E
Nothing selected
> select #3/A-E
1821 atoms, 1812 bonds, 151 pseudobonds, 255 residues, 5 models selected
> select #3/A/C/D
1072 atoms, 1065 bonds, 60 pseudobonds, 156 residues, 4 models selected
> select #3/A:20-47/C:20-51/E:11-45
706 atoms, 723 bonds, 18 pseudobonds, 95 residues, 2 models selected
> hide sel atoms
> select #3/A:20-47/C:20-51,101/E:11-45,101
838 atoms, 863 bonds, 60 pseudobonds, 97 residues, 4 models selected
> hide sel atoms
> show sel atoms
> ~distance #4/A:27@C #2.1/A:38@N
> ~distance #4/B:1@N #2.1/B:40@C
> ~distance #4/A:1@N #4/B:28@C
> ~distance #4/B:1@N #2.1/K:51@OXT
> ~distance #4/D:28@C #2.1/K:48@N
> ~distance #4/D:1@N #4/E:28@C
> ~distance #4/C:28@C #4/E:1@N
> select #3/A:20-47/C:20-51,101/E:11-45,101/B/D
1120 atoms, 1143 bonds, 114 pseudobonds, 153 residues, 5 models selected
> show sel atoms
> select #3 &~:BCL&~protein
197 atoms, 146 bonds, 51 residues, 1 model selected
> show sel atoms
> delete atoms sel
> delete bonds sel
> select #3:BCL
264 atoms, 280 bonds, 16 pseudobonds, 4 residues, 2 models selected
> show sel atoms
> select #3/A:BCL
66 atoms, 70 bonds, 4 pseudobonds, 1 residue, 2 models selected
> hide sel atoms
> show sel atoms
> select #3/A:BCL/E:BCL
198 atoms, 210 bonds, 12 pseudobonds, 3 residues, 2 models selected
> select #3/A:101/E:102
132 atoms, 140 bonds, 8 pseudobonds, 2 residues, 2 models selected
> hide sel atoms
> show sel atoms
> delete atoms (#!3 & sel)
> delete bonds (#!3 & sel)
> save "/Users/drornoy/Desktop/LH2 helices/LH2 5hB combined.cxs"
——— End of log from Tue Oct 17 13:50:43 2023 ———
opened ChimeraX session
> select #3/E:1-19/A:1-19
263 atoms, 269 bonds, 34 residues, 1 model selected
> select #3/C:1-19/A:1-19
226 atoms, 230 bonds, 30 residues, 1 model selected
> show sel atoms
> select #3/A:1
Nothing selected
> select #3/A
353 atoms, 362 bonds, 4 pseudobonds, 47 residues, 2 models selected
> select #3/A:47@C/B:1@N
2 atoms, 2 residues, 1 model selected
> ui tool show Distances
> distance #3/A:47@C #3/B:1@N
Distance between combination #3/A THR 47 C and /B GLY 1 N: 16.032Å
> select #3/B:28@C/C:16@N
2 atoms, 2 residues, 1 model selected
> distance #3/C:16@N #3/B:28@C
Distance between combination #3/C ALA 16 N and /B GLY 28 C: 10.723Å
> select #3/C:1-15
85 atoms, 87 bonds, 11 residues, 1 model selected
> hide sel atoms
> select #3/C:51@C/D:1@N
2 atoms, 2 residues, 1 model selected
> distance #3/C:51@C #3/D:1@N
Distance between combination #3/C GLY 51 C and /D GLY 1 N: 13.421Å
> select #3/E:1-10
83 atoms, 84 bonds, 10 residues, 1 model selected
> show sel atoms
> hide sel atoms
> select #3/A:1-15
85 atoms, 87 bonds, 11 residues, 1 model selected
> hide sel atoms
> select #3/E:1-12
99 atoms, 101 bonds, 12 residues, 1 model selected
> hide sel atoms
> select #3/D:28@C/E:12@N
2 atoms, 2 residues, 1 model selected
> distance #3/E:12@N #3/D:28@C
Distance between combination #3/E PRO 12 N and /D GLY 28 C: 11.557Å
> ~distance #3/E:12@N #3/D:28@C
> select #3/D:28@C/E:13@N
2 atoms, 2 residues, 1 model selected
> distance #3/E:13@N #3/D:28@C
Distance between combination #3/E THR 13 N and /D GLY 28 C: 9.080Å
> select #3/A:1-19
113 atoms, 115 bonds, 15 residues, 1 model selected
> hide sel atoms
> save "/Users/drornoy/Desktop/LH2 helices/LH2 5hB combined.cxs"
> select #3/A:1-19
113 atoms, 115 bonds, 15 residues, 1 model selected
> delete atoms sel
> delete bonds sel
> color #!3 bychain
> color #!3 byhetero
> select #3/A
240 atoms, 246 bonds, 4 pseudobonds, 32 residues, 2 models selected
> select #3/C:1-15
85 atoms, 87 bonds, 11 residues, 1 model selected
> delete atoms sel
> delete bonds sel
> select #3/E:47-59
20 atoms, 19 bonds, 4 residues, 1 model selected
> show sel atoms
> hide sel atoms
> select #3/E:1-12
99 atoms, 101 bonds, 12 residues, 1 model selected
> show sel atoms
> delete atoms sel
> delete bonds sel
> select #3/E:46-59
29 atoms, 28 bonds, 5 residues, 1 model selected
> show sel atoms
> delete atoms sel
> delete bonds sel
> select :BCL
1914 atoms, 2030 bonds, 116 pseudobonds, 29 residues, 6 models selected
> select #3:BCL
132 atoms, 140 bonds, 8 pseudobonds, 2 residues, 2 models selected
> select #3:BCL@C[123456789],C[12][0123456789]
40 atoms, 38 bonds, 2 residues, 1 model selected
> hide sel atoms
> delete atoms sel
> delete bonds sel
> save "/Users/drornoy/Desktop/LH2 helices/LH2 5hB combined.cxs"
> select #3
1126 atoms, 1151 bonds, 65 pseudobonds, 159 residues, 5 models selected
> show sel atoms
> select #3/A:48-51
34 atoms, 36 bonds, 4 residues, 1 model selected
> delete atoms sel
> delete bonds sel
> save "/Users/drornoy/Desktop/LH2 helices/LH2 5hB combined.cxs"
——— End of log from Tue Oct 17 14:26:21 2023 ———
opened ChimeraX session
> hide #!3 models
> show #!3 models
> hide #!1 models
> show #!1 models
> close #2
> close #4
> combine #1 close true modelID 4
Expected a keyword
> help help:user
> combine #1 close true modelId 4
No structures specified
> combine #1
No structures specified
> combine #3
> select #2/B
140 atoms, 139 bonds, 28 residues, 1 model selected
> select #2/B:1@N/A:47@C
2 atoms, 2 residues, 1 model selected
> ui tool show Distances
> ui tool show "Build Structure"
> build join peptide sel length 16 omega 180 phi -120 move N
Atoms must be in different models
> split #2
Split copy of combination (#2) into 5 models
Chain information for copy of combination A #2.1
---
Chain | Description
A | No description available
Chain information for copy of combination B #2.2
---
Chain | Description
B | No description available
Chain information for copy of combination C #2.3
---
Chain | Description
C | No description available
Chain information for copy of combination D #2.4
---
Chain | Description
D | No description available
Chain information for copy of combination E #2.5
---
Chain | Description
E | No description available
> select #2/B:1@N/A:47@C
2 atoms, 2 residues, 2 models selected
> build join peptide sel length 16 omega 180 phi -120 move N
C-terminal carbon not bonded to exactly one carbon
> select #2/A:47@TMP
1 atom, 1 residue, 1 model selected
> delete atoms sel
> delete bonds sel
> select #2/B:1@N/A:47@C
2 atoms, 2 residues, 2 models selected
> build join peptide sel length 16 omega 180 phi -120 move N
> align #2.1:48-75 toAtoms #3/B matchAtomNames true move atoms
RMSD between 140 atom pairs is 0.000 angstroms
> hide #!3 models
> select #2/C:16@N/A:75@C
2 atoms, 2 residues, 2 models selected
> save "/Users/drornoy/Desktop/LH2 helices/LH2 5hB joined.cxs"
——— End of log from Tue Oct 17 18:18:24 2023 ———
opened ChimeraX session
> select #2.3:BCL
46 atoms, 50 bonds, 4 pseudobonds, 1 residue, 2 models selected
> ui tool show "Renumber Residues"
> renumber #2.3/C:101 start 201 relative false
1 residues renumbered
> select #2.5:BCL
46 atoms, 50 bonds, 4 pseudobonds, 1 residue, 2 models selected
> renumber #2.5/E:101 start 202 relative false
1 residues renumbered
> select #2/C:16@N/A:75@C
2 atoms, 2 residues, 2 models selected
> ui tool show "Build Structure"
> build join peptide sel length 4 omega 180 phi -120 move N
> show #!3 models
> hide #!3 models
> show #!3 models
> align #2.1:91-126,201 toAtoms #3/C matchAtomNames true move atoms
RMSD between 314 atom pairs is 0.000 angstroms
> hide #!3 models
> save "/Users/drornoy/Desktop/LH2 helices/LH2 5hB joined.cxs"
> select #2@OXT
1 atom, 1 residue, 1 model selected
> delete atoms sel
> delete bonds sel
> select #2/D:1@N/A:126@C
2 atoms, 2 residues, 2 models selected
> build join peptide sel length 4 omega 180 phi -120 move N
> show #!3 models
> align #2.1:127-154 toAtoms #3/D matchAtomNames true move atoms
RMSD between 142 atom pairs is 0.000 angstroms
> hide #!3 models
> select #2/E:13@N/A:154@C
2 atoms, 2 residues, 2 models selected
> build join peptide sel length 4 omega 180 phi -120 move N
> select #2/A:167-202
336 atoms, 351 bonds, 20 pseudobonds, 35 residues, 3 models selected
> select #2/A:167-199,202
290 atoms, 301 bonds, 16 pseudobonds, 34 residues, 3 models selected
> select #2/A:167-200,202
290 atoms, 301 bonds, 16 pseudobonds, 34 residues, 3 models selected
> select #2/A:167-201,202
336 atoms, 351 bonds, 20 pseudobonds, 35 residues, 3 models selected
> select #2/A:167-199,202
290 atoms, 301 bonds, 16 pseudobonds, 34 residues, 3 models selected
> align #2.1:167-199,202 toAtoms #3/E matchAtomNames true move atoms
RMSD between 290 atom pairs is 0.000 angstroms
> save "/Users/drornoy/Desktop/LH2 helices/LH2 5hB joined.cxs"
> align #2.1:47@C:48@N
Missing required "to_atoms" argument
> select #2.1:47@C:48@N
2 atoms, 1 bond, 2 residues, 1 model selected
> ~bond sel
> select #2.1:75@C:91@N
2 atoms, 1 bond, 2 residues, 1 model selected
> ~bond sel
> select #2.1:126@C:127@N
2 atoms, 1 bond, 2 residues, 1 model selected
> ~bond sel
> select #2.1:154@C:167@N
2 atoms, 1 bond, 2 residues, 1 model selected
> ~bond sel
> save "/Users/drornoy/Desktop/LH2 helices/LH2 5hB joined.cxs"
——— End of log from Tue Oct 17 18:44:05 2023 ———
opened ChimeraX session
> open "/Users/drornoy/Desktop/ChimeraX cleaner/clean.py"
executed clean.py
> save "/Users/drornoy/Desktop/LH2 helices/LH2 5hB joined.cxs"
OpenGL version: 4.1 Metal - 76.3
OpenGL renderer: Apple M1 Pro
OpenGL vendor: Apple
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro18,3
Processor Name: Unknown
Processor Speed: 2.4 GHz
Number of Processors: 1
Total Number of Cores: 8
L2 Cache: 16 MB
Memory: 16 GB
Software:
System Software Overview:
System Version: macOS 12.5.1 (21G83)
Kernel Version: Darwin 21.6.0
Time since boot: 20 days 5:27
Graphics/Displays:
Apple M1 Pro:
Chipset Model: Apple M1 Pro
Type: GPU
Bus: Built-In
Total Number of Cores: 14
Vendor: Apple (0x106b)
Metal Family: Supported, Metal GPUFamily Apple 7
Displays:
Color LCD:
Display Type: Built-in Liquid Retina XDR Display
Resolution: 3024 x 1964 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Installed Packages:
alabaster: 0.7.13
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.2.1
Babel: 2.12.1
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
build: 0.10.0
certifi: 2021.10.8
cftime: 1.6.2
charset-normalizer: 3.1.0
ChimeraX-AddCharge: 1.5.9.1
ChimeraX-AddH: 2.2.5
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.3.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.9.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.43.10
ChimeraX-AtomicLibrary: 10.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.8
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3.1
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.3
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.6.1
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4
ChimeraX-DockPrep: 1.1.1
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.0.12
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.9
ChimeraX-ModelPanel: 1.3.7
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.0
ChimeraX-NRRD: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.10.1
ChimeraX-PDB: 2.7.2
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 3.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.1
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.8.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10.3
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Topography: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.28.4
ChimeraX-uniprot: 2.2.2
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.1
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.1.3
contourpy: 1.0.7
cxservices: 1.2.2
cycler: 0.11.0
Cython: 0.29.33
debugpy: 1.6.7
decorator: 5.1.1
docutils: 0.19
executing: 1.2.0
filelock: 3.9.0
fonttools: 4.39.3
funcparserlib: 1.0.1
grako: 3.16.5
h5py: 3.8.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.35
imagecodecs: 2022.9.26
imagesize: 1.4.1
importlib-metadata: 6.6.0
ipykernel: 6.21.1
ipython: 8.10.0
ipython-genutils: 0.2.0
ipywidgets: 8.0.6
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.0.2
jupyter-core: 5.3.0
jupyterlab-widgets: 3.0.7
kiwisolver: 1.4.4
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.2
matplotlib: 3.6.3
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.2
networkx: 2.8.8
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.4
numpy: 1.23.5
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.3.0
pip: 23.0
pkginfo: 1.9.6
platformdirs: 3.5.0
prompt-toolkit: 3.0.38
psutil: 5.9.4
ptyprocess: 0.7.0
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.14.0
pynrrd: 1.0.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.4.2
PyQt6-Qt6: 6.4.3
PyQt6-sip: 13.4.1
PyQt6-WebEngine-commercial: 6.4.0
PyQt6-WebEngine-Qt6: 6.4.3
python-dateutil: 2.8.2
pytz: 2023.3
pyzmq: 25.0.2
qtconsole: 5.4.0
QtPy: 2.3.1
RandomWords: 0.4.0
requests: 2.28.2
scipy: 1.9.3
setuptools: 67.4.0
setuptools-scm: 7.0.5
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.4.1
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.4
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.1
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.2
tables: 3.7.0
tcia-utils: 1.2.0
tifffile: 2022.10.10
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.3.1
traitlets: 5.9.0
typing-extensions: 4.5.0
tzdata: 2023.3
urllib3: 1.26.15
wcwidth: 0.2.6
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.7
zipp: 3.15.0
File attachment: LH2 5HB for design.cxs
Note:
See TracTickets
for help on using tickets.
Added by email2trac