id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 10137 Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device returned engine == 0 bullitt@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: macOS-10.16-x86_64-i386-64bit ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. computer went to sleep. when re-awakened, chimerax crashed. Fatal Python error: Segmentation fault Current thread 0x00007ff8516e1640 (most recent call first): File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py"", line 275 in event_loop File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py"", line 892 in init File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py"", line 1043 in File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py"", line 87 in _run_code File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py"", line 197 in _run_module_as_main {""app_name"":""ChimeraX"",""timestamp"":""2023-11-09 16:41:17.00 -0500"",""app_version"":""1.6.1"",""slice_uuid"":""5df621ee-554e-36a8-b448-93b2334e5480"",""build_version"":""1.6.1.0"",""platform"":1,""bundleID"":""edu.ucsf.cgl.ChimeraX"",""share_with_app_devs"":0,""is_first_party"":0,""bug_type"":""309"",""os_version"":""macOS 13.4.1 (22F770820d)"",""roots_installed"":0,""name"":""ChimeraX"",""incident_id"":""87D5A138-99F6-42F4-BA25-DD7884A97449""} { ""uptime"" : 320000, ""procRole"" : ""Background"", ""version"" : 2, ""userID"" : 502, ""deployVersion"" : 210, ""modelCode"" : ""MacBookPro16,1"", ""coalitionID"" : 5899, ""osVersion"" : { ""train"" : ""macOS 13.4.1"", ""build"" : ""22F770820d"", ""releaseType"" : ""User"" }, ""captureTime"" : ""2023-11-09 16:41:11.0451 -0500"", ""incident"" : ""87D5A138-99F6-42F4-BA25-DD7884A97449"", ""pid"" : 18832, ""cpuType"" : ""X86-64"", ""roots_installed"" : 0, ""bug_type"" : ""309"", ""procLaunch"" : ""2023-11-07 10:25:47.7216 -0500"", ""procStartAbsTime"" : 262346775359863, ""procExitAbsTime"" : 328306823097812, ""procName"" : ""ChimeraX"", ""procPath"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/MacOS\/ChimeraX"", ""bundleInfo"" : {""CFBundleShortVersionString"":""1.6.1"",""CFBundleVersion"":""1.6.1.0"",""CFBundleIdentifier"":""edu.ucsf.cgl.ChimeraX""}, ""storeInfo"" : {""deviceIdentifierForVendor"":""D7D3B377-4527-5057-A8B7-1D0ECDF18636"",""thirdParty"":true}, ""parentProc"" : ""launchd"", ""parentPid"" : 1, ""coalitionName"" : ""edu.ucsf.cgl.ChimeraX"", ""crashReporterKey"" : ""D6D0BAE5-DDDC-7E4B-A5C4-407F474777DB"", ""codeSigningID"" : ""edu.ucsf.cgl.ChimeraX"", ""codeSigningTeamID"" : ""LWV8X224YF"", ""codeSigningFlags"" : 570491649, ""codeSigningValidationCategory"" : 6, ""codeSigningTrustLevel"" : 0, ""wakeTime"" : 20820, ""bridgeVersion"" : {""build"":""20P5060"",""train"":""7.5""}, ""sleepWakeUUID"" : ""534553BD-10B5-43D0-A08A-6715C9B790E0"", ""sip"" : ""enabled"", ""vmRegionInfo"" : ""0x18 is not in any region. 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of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Users/eb1MacPro/Dropbox/Hflu/Compare_Hflu_oldnew_2023.11.06.cxs format > session Opened hibs53mbrix.brix as #1, grid size 60,60,100, pixel 3.5, shown at level 3.3e+04, step 1, values float32 Opened postprocess_Hib_job113.mrc as #2, grid size 280,280,280, pixel 1.08, shown at level 0.00681, step 1, values float32 Opened hibs53mbrix.brix as #3, grid size 60,60,100, pixel 3.5, shown at level 6.91e+04, step 1, values float32 Opened hibs53mbrix.brix z flip as #4, grid size 60,60,100, pixel 3.5, shown at level 4.61e+04, step 1, values float32 Opened postprocess_Hib_job113.mrc as #5, grid size 280,280,280, pixel 1.08, shown at level 0.00487, step 2, values float32 Opened postprocess_Hib_job113.mrc as #6, grid size 280,280,280, pixel 1.08, shown at level 0.00501, step 2, values float32 opened ChimeraX session > open > /Users/eb1MacPro/Dropbox/EB/Hflu_Cryo/Hib_Purdue_again_2023/postprocess_job129.mrc > /Users/eb1MacPro/Dropbox/EB/Hflu_Cryo/Hib_Purdue_again_2023/postprocess_job131.mrc > /Users/eb1MacPro/Dropbox/EB/Hflu_Cryo/Hib_Purdue_again_2023/postprocess_job135.mrc Opened postprocess_job129.mrc as #7.1, grid size 280,280,280, pixel 1.08, shown at level 0.00834, step 2, values float32 Opened postprocess_job131.mrc as #7.2, grid size 280,280,280, pixel 1.08, shown at level 0.00733, step 2, values float32 Opened postprocess_job135.mrc as #7.3, grid size 280,280,280, pixel 1.08, shown at level 0.00328, step 2, values float32 > close #4 > close #7 > open > /Users/eb1MacPro/Dropbox/EB/Hflu_Cryo/Hib_Purdue_again_2023/postprocess_job129.mrc Opened postprocess_job129.mrc as #4, grid size 280,280,280, pixel 1.08, shown at level 0.00834, step 2, values float32 > open > /Users/eb1MacPro/Dropbox/EB/Hflu_Cryo/Hib_Purdue_again_2023/postprocess_job135.mrc Opened postprocess_job135.mrc as #7, grid size 280,280,280, pixel 1.08, shown at level 0.00328, step 2, values float32 > open > /Users/eb1MacPro/Dropbox/EB/Hflu_Cryo/Hib_Purdue_again_2023/postprocess_job131.mrc Opened postprocess_job131.mrc as #8, grid size 280,280,280, pixel 1.08, shown at level 0.00733, step 2, values float32 > view > ui mousemode right ""translate selected models"" Drag select of 1 hibs53mbrix.brix , 13 postprocess_Hib_job113.mrc , 7 postprocess_job135.mrc > ~select Nothing selected > select #4 #7 #8 6 models selected > view matrix models > #4,1,0,0,9.1647,0,1,0,-81.337,0,0,1,0.95492,#7,1,0,0,9.1647,0,1,0,-81.337,0,0,1,0.95492,#8,1,0,0,9.1647,0,1,0,-81.337,0,0,1,0.95492 > view matrix models > #4,1,0,0,14.156,0,1,0,-125.15,0,0,1,3.6282,#7,1,0,0,14.156,0,1,0,-125.15,0,0,1,3.6282,#8,1,0,0,14.156,0,1,0,-125.15,0,0,1,3.6282 > turn y 90 > view matrix models > #4,1,0,0,-138.57,0,1,0,-149.71,0,0,1,-113.75,#7,1,0,0,-138.57,0,1,0,-149.71,0,0,1,-113.75,#8,1,0,0,-138.57,0,1,0,-149.71,0,0,1,-113.75 > view matrix models > #4,1,0,0,-154.37,0,1,0,-151.45,0,0,1,-112.8,#7,1,0,0,-154.37,0,1,0,-151.45,0,0,1,-112.8,#8,1,0,0,-154.37,0,1,0,-151.45,0,0,1,-112.8 > ui mousemode right ""rotate selected models"" > view matrix models > #4,0.52253,0.84473,-0.11571,-193.84,-0.82918,0.53506,0.16175,19.11,0.19855,0.011421,0.98002,-141.27,#7,0.52253,0.84473,-0.11571,-193.84,-0.82918,0.53506,0.16175,19.11,0.19855,0.011421,0.98002,-141.27,#8,0.52253,0.84473,-0.11571,-193.84,-0.82918,0.53506,0.16175,19.11,0.19855,0.011421,0.98002,-141.27 > view matrix models > #4,0.27186,0.95607,-0.10965,-174.12,-0.96202,0.27291,-0.0055877,103.9,0.024581,0.107,0.99395,-131.83,#7,0.27186,0.95607,-0.10965,-174.12,-0.96202,0.27291,-0.0055877,103.9,0.024581,0.107,0.99395,-131.83,#8,0.27186,0.95607,-0.10965,-174.12,-0.96202,0.27291,-0.0055877,103.9,0.024581,0.107,0.99395,-131.83 > view matrix models > #4,0.45232,0.87593,-0.16776,-180.27,-0.85306,0.4798,0.20513,24.581,0.26017,0.050324,0.96425,-154.05,#7,0.45232,0.87593,-0.16776,-180.27,-0.85306,0.4798,0.20513,24.581,0.26017,0.050324,0.96425,-154.05,#8,0.45232,0.87593,-0.16776,-180.27,-0.85306,0.4798,0.20513,24.581,0.26017,0.050324,0.96425,-154.05 > view matrix models > #4,0.71156,0.69704,-0.088416,-203.81,-0.69493,0.71675,0.057867,-13.026,0.10371,0.020267,0.9944,-130.57,#7,0.71156,0.69704,-0.088416,-203.81,-0.69493,0.71675,0.057867,-13.026,0.10371,0.020267,0.9944,-130.57,#8,0.71156,0.69704,-0.088416,-203.81,-0.69493,0.71675,0.057867,-13.026,0.10371,0.020267,0.9944,-130.57 > view matrix models > #4,0.75275,0.65388,-0.076237,-205.24,-0.65292,0.75635,0.040405,-22.716,0.084082,0.019362,0.99627,-127.77,#7,0.75275,0.65388,-0.076237,-205.24,-0.65292,0.75635,0.040405,-22.716,0.084082,0.019362,0.99627,-127.77,#8,0.75275,0.65388,-0.076237,-205.24,-0.65292,0.75635,0.040405,-22.716,0.084082,0.019362,0.99627,-127.77 > ui tool show ""Fit in Map"" > fitmap #4 inMap #2 Fit map postprocess_job129.mrc in map postprocess_Hib_job113.mrc using 27434 points correlation = 0.6279, correlation about mean = 0.1043, overlap = 1.384 steps = 128, shift = 17.9, angle = 8.9 degrees Position of postprocess_job129.mrc (#4) relative to postprocess_Hib_job113.mrc (#2) coordinates: Matrix rotation and translation 0.19090514 0.98160815 0.00081474 -26.50525695 -0.98160740 0.19090610 -0.00133081 270.67266447 -0.00146187 -0.00054570 0.99999878 4.96283575 Axis 0.00039991 0.00115963 -0.99999925 Axis point 150.94422450 151.41641746 0.00000000 Rotation angle (degrees) 78.99439569 Shift along axis -4.65955078 > fitmap #7 inMap #5 Fit map postprocess_job135.mrc in map postprocess_Hib_job113.mrc using 27419 points correlation = 0.7664, correlation about mean = 0.458, overlap = 1.127 steps = 272, shift = 23.8, angle = 11.3 degrees Position of postprocess_job135.mrc (#7) relative to postprocess_Hib_job113.mrc (#5) coordinates: Matrix rotation and translation 0.75322197 -0.65776197 -0.00242198 136.75124699 0.65775940 0.75322584 -0.00185016 -61.92957421 0.00304126 -0.00019951 0.99999542 43.42861002 Axis 0.00125474 -0.00415287 0.99999059 Axis point 150.64042843 151.30317403 0.00000000 Rotation angle (degrees) 41.12978211 Shift along axis 43.85697331 > fitmap #8 inMap #6 Fit map postprocess_job131.mrc in map postprocess_Hib_job113.mrc using 27440 points correlation = 0.8461, correlation about mean = 0.4972, overlap = 2.24 steps = 192, shift = 10.8, angle = 36.2 degrees Position of postprocess_job131.mrc (#8) relative to postprocess_Hib_job113.mrc (#6) coordinates: Matrix rotation and translation 0.99268962 -0.12062575 -0.00409244 19.73820478 0.12061511 0.99269553 -0.00275583 -16.74170067 0.00439497 0.00224208 0.99998789 -13.46723247 Axis 0.02070026 -0.03515302 0.99916754 Axis point 151.91531221 156.56316590 0.00000000 Rotation angle (degrees) 6.93371080 Shift along axis -12.45891411 > hide #!6 models > hide #!5 models > hide #!4 models > view matrix models > #4,0.93637,0.35001,0.026518,-199.06,-0.35025,0.93665,0.0048543,-92.98,-0.023139,-0.013833,0.99964,-124.58,#7,0.93591,0.34281,0.080974,-197.83,-0.34823,0.93508,0.066103,-97.019,-0.053056,-0.090063,0.99452,-69.201,#8,0.91326,-0.39392,0.10388,-89.018,0.39798,0.91715,-0.020987,-202.01,-0.087009,0.06051,0.99437,-115.57 > view matrix models > #4,0.62967,0.77612,-0.033939,-208.5,-0.77235,0.63012,0.080121,7.4829,0.083569,-0.024237,0.99621,-138.79,#7,0.63207,0.77365,0.044221,-212.77,-0.77305,0.62557,0.10515,8.3327,0.053685,-0.10065,0.99347,-83.424,#8,0.99235,0.12181,0.019851,-169.56,-0.12218,0.99233,0.018675,-140.68,-0.017424,-0.020958,0.99963,-114.11 > fitmap #8 inMap #6 Fit map postprocess_job131.mrc in map postprocess_Hib_job113.mrc using 27440 points correlation = 0.8461, correlation about mean = 0.4971, overlap = 2.24 steps = 60, shift = 0.449, angle = 2.42 degrees Position of postprocess_job131.mrc (#8) relative to postprocess_Hib_job113.mrc (#6) coordinates: Matrix rotation and translation 0.99274692 -0.12015646 -0.00399821 19.65142345 0.12014578 0.99275228 -0.00281360 -16.64991467 0.00430730 0.00231283 0.99998811 -13.46771348 Axis 0.02131566 -0.03453427 0.99917617 Axis point 151.61046496 156.60774648 0.00000000 Rotation angle (degrees) 6.90654135 Shift along axis -12.46274270 > fitmap #7 inMap #5 Fit map postprocess_job135.mrc in map postprocess_Hib_job113.mrc using 27419 points correlation = 0.7664, correlation about mean = 0.4581, overlap = 1.127 steps = 100, shift = 0.295, angle = 2.4 degrees Position of postprocess_job135.mrc (#7) relative to postprocess_Hib_job113.mrc (#5) coordinates: Matrix rotation and translation 0.75369998 -0.65721414 -0.00243207 136.58744165 0.65721198 0.75370385 -0.00171445 -61.92159394 0.00295982 -0.00030621 0.99999563 43.46090653 Axis 0.00107137 -0.00410205 0.99999101 Axis point 150.64582557 151.29982606 0.00000000 Rotation angle (degrees) 41.08811731 Shift along axis 43.86085697 > fitmap #4 inMap #2 Fit map postprocess_job129.mrc in map postprocess_Hib_job113.mrc using 27434 points correlation = 0.6272, correlation about mean = 0.1025, overlap = 1.384 steps = 76, shift = 0.726, angle = 1.83 degrees Position of postprocess_job129.mrc (#4) relative to postprocess_Hib_job113.mrc (#2) coordinates: Matrix rotation and translation 0.16693361 0.98596750 0.00111503 -23.58985988 -0.98596709 0.16693498 -0.00126902 274.94159142 -0.00143735 -0.00088754 0.99999857 4.99867916 Axis 0.00019346 0.00129436 -0.99999914 Axis point 150.91155575 151.43329214 0.00000000 Rotation angle (degrees) 80.39042149 Shift along axis -4.64736606 > volume #5 level 0.008213 > volume #6 level 0.008138 > volume #4 level 0.01234 > volume #7 level 0.008436 > ~select Nothing selected > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!4 models > show #!4 models > hide #!7 models > show #!7 models > hide #!7 models > show #!7 models > hide #!7 models > hide #!5 models > show #!5 models > hide #!5 models > show #!5 models > hide #!5 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > show #!7 models > cofr #7 > turn y 10 #7 Expected 'forever' or an integer >= 1 or a keyword > turn y 10 models #7 > turn y -10 models #7 > fitmap #7 inMap #2 Fit map postprocess_job135.mrc in map postprocess_Hib_job113.mrc using 6214 points correlation = 0.8696, correlation about mean = 0.2629, overlap = 0.6876 steps = 172, shift = 7.79, angle = 30.1 degrees Position of postprocess_job135.mrc (#7) relative to postprocess_Hib_job113.mrc (#2) coordinates: Matrix rotation and translation 0.75434762 -0.65647515 0.00008340 136.03716342 0.65647446 0.75434663 -0.00155040 -61.90535684 0.00095489 0.00122430 0.99999878 43.69932363 Axis 0.00211333 -0.00066376 0.99999755 Axis point 150.65050426 150.70861781 0.00000000 Rotation angle (degrees) 41.03169593 Shift along axis 44.02779773 > hide #!2 models > show #!5 models > hide #!5 models > hide #!6 models > show #!6 models > hide #!6 models > show #!5 models > show #!2 models > show #!6 models > move y -20 > hide #!7 models > hide #!8 models > hide #!4 models > move y -20 > hide #!5 models > show #!5 models > hide #!5 models > show #!5 models > hide #!5 models > show #!5 models > hide #!5 models > show #!5 models > hide #!5 models > hide #!2 models > hide #!6 models > show #!4 models > show #!7 models > show #!8 models > hide #!4 models > show #!3 models > hide #!3 models > show #!4 models > hide #!4 models > show #!4 models > hide #!4 models > show #!4 models > hide #!7 models > show #!7 models > hide #!7 models > show #!7 models > hide #!7 models > hide #!8 models > show #!8 models > show #!7 models > hide #!7 models > show #!7 models > hide #!7 models > show #!6 models > hide #!6 models > show #!5 models > hide #!5 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models Unsupported scale factor (0.000000) detected on Display0 QPainter::begin: Paint device returned engine == 0, type: 3 ===== Log before crash end ===== Log: > camera ortho UCSF ChimeraX version: 1.6.1 (2023-05-09) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 ATI-4.12.7 OpenGL renderer: AMD Radeon Pro 5500M OpenGL Engine OpenGL vendor: ATI Technologies Inc. Python: 3.9.11 Locale: UTF-8 Qt version: PyQt6 6.4.2, Qt 6.4.2 Qt runtime version: 6.4.3 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro16,1 Processor Name: 8-Core Intel Core i9 Processor Speed: 2.3 GHz Number of Processors: 1 Total Number of Cores: 8 L2 Cache (per Core): 256 KB L3 Cache: 16 MB Hyper-Threading Technology: Enabled Memory: 32 GB System Firmware Version: 1968.120.12.0.0 (iBridge: 20.16.5060.0.0,0) OS Loader Version: 577~170 Software: System Software Overview: System Version: macOS 13.4.1 (c) (22F770820d) Kernel Version: Darwin 22.5.0 Time since boot: 11 days, 23 hours, 31 minutes Graphics/Displays: Intel UHD Graphics 630: Chipset Model: Intel UHD Graphics 630 Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x3e9b Revision ID: 0x0002 Automatic Graphics Switching: Supported gMux Version: 5.0.0 Metal Support: Metal 3 AMD Radeon Pro 5500M: Chipset Model: AMD Radeon Pro 5500M Type: GPU Bus: PCIe PCIe Lane Width: x16 VRAM (Total): 8 GB Vendor: AMD (0x1002) Device ID: 0x7340 Revision ID: 0x0040 ROM Revision: 113-D3220E-190 VBIOS Version: 113-D32206U1-019 Option ROM Version: 113-D32206U1-019 EFI Driver Version: 01.A1.190 Automatic Graphics Switching: Supported gMux Version: 5.0.0 Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 3072 x 1920 Retina Framebuffer Depth: 24-Bit Color (ARGB8888) Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal Installed Packages: alabaster: 0.7.13 appdirs: 1.4.4 appnope: 0.1.3 asttokens: 2.2.1 Babel: 2.12.1 backcall: 0.2.0 beautifulsoup4: 4.11.2 blockdiag: 3.0.0 build: 0.10.0 certifi: 2021.10.8 cftime: 1.6.2 charset-normalizer: 3.1.0 ChimeraX-AddCharge: 1.5.9.1 ChimeraX-AddH: 2.2.5 ChimeraX-AlignmentAlgorithms: 2.0.1 ChimeraX-AlignmentHdrs: 3.3.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.9.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.3 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.43.10 ChimeraX-AtomicLibrary: 10.0.6 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3.2 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.1 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.8 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.2 ChimeraX-ChangeChains: 1.0.2 ChimeraX-CheckWaters: 1.3.1 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-Clipper: 0.21.0 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.3 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.6.1 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.4.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2 ChimeraX-DistMonitor: 1.4 ChimeraX-DockPrep: 1.1.1 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ISOLDE: 1.6.0 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-Label: 1.1.7 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.2 ChimeraX-Map: 1.1.4 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.0.12 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.12 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.9 ChimeraX-ModelPanel: 1.3.7 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.0 ChimeraX-NRRD: 1.0 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.10.1 ChimeraX-PDB: 2.7.2 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 3.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.1 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.8.3 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.1 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.10.3 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1.2 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Topography: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.28.4 ChimeraX-uniprot: 2.2.2 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.1 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.1.3 contourpy: 1.0.7 cxservices: 1.2.2 cycler: 0.11.0 Cython: 0.29.33 debugpy: 1.6.7 decorator: 5.1.1 docutils: 0.19 executing: 1.2.0 filelock: 3.9.0 fonttools: 4.39.3 funcparserlib: 1.0.1 grako: 3.16.5 h5py: 3.8.0 html2text: 2020.1.16 idna: 3.4 ihm: 0.35 imagecodecs: 2022.9.26 imagesize: 1.4.1 importlib-metadata: 6.6.0 ipykernel: 6.21.1 ipython: 8.10.0 ipython-genutils: 0.2.0 ipywidgets: 8.0.6 jedi: 0.18.2 Jinja2: 3.1.2 jupyter-client: 8.0.2 jupyter-core: 5.3.0 jupyterlab-widgets: 3.0.7 kiwisolver: 1.4.4 line-profiler: 4.0.2 lxml: 4.9.2 lz4: 4.3.2 MarkupSafe: 2.1.2 matplotlib: 3.6.3 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.5.6 netCDF4: 1.6.2 networkx: 2.8.8 nibabel: 5.0.1 nptyping: 2.5.0 numexpr: 2.8.4 numpy: 1.23.5 openvr: 1.23.701 packaging: 21.3 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 9.3.0 pip: 23.0 pkginfo: 1.9.6 platformdirs: 3.5.0 prompt-toolkit: 3.0.38 psutil: 5.9.4 ptyprocess: 0.7.0 pure-eval: 0.2.2 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.14.0 pynrrd: 1.0.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 pyproject-hooks: 1.0.0 PyQt6-commercial: 6.4.2 PyQt6-Qt6: 6.4.3 PyQt6-sip: 13.4.1 PyQt6-WebEngine-commercial: 6.4.0 PyQt6-WebEngine-Qt6: 6.4.3 python-dateutil: 2.8.2 pytz: 2023.3 pyzmq: 25.0.2 qtconsole: 5.4.0 QtPy: 2.3.1 RandomWords: 0.4.0 requests: 2.28.2 scipy: 1.9.3 setuptools: 67.4.0 setuptools-scm: 7.0.5 sfftk-rw: 0.7.3 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.4.1 sphinx: 6.1.3 sphinx-autodoc-typehints: 1.22 sphinxcontrib-applehelp: 1.0.4 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.1 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 stack-data: 0.6.2 tables: 3.7.0 tcia-utils: 1.2.0 tifffile: 2022.10.10 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.3.1 traitlets: 5.9.0 typing-extensions: 4.5.0 tzdata: 2023.3 urllib3: 1.26.15 wcwidth: 0.2.6 webcolors: 1.12 wheel: 0.38.4 wheel-filename: 1.4.1 widgetsnbextension: 4.0.7 zipp: 3.15.0 }}} " defect closed normal Window Toolkit duplicate Tom Goddard all ChimeraX