id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
1341	Friendlier alignment API	Tristan Croll	Eric Pettersen	I found my way to what I needed by digging through the source of `match_maker.match`, but unless I've missed it there's no existing simple API call to get (residues1, residues2) where residues1 and residues2 are equal length residues1[i] corresponds to residues2[i] after alignment (by sequence and/or structure). Would be really useful to have for all sorts of residue-by-residue structure comparisons.	enhancement	closed	moderate		Structure Comparison		fixed						all	ChimeraX