id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 14382 Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device returned engine == 0 jackieliu0406@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-14.2.1-arm64-arm-64bit ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Segmentation fault Current thread 0x00000001dbdc5000 (most recent call first): File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py"", line 275 in event_loop File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py"", line 892 in init File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py"", line 1043 in File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py"", line 87 in _run_code File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py"", line 197 in _run_module_as_main {""app_name"":""ChimeraX"",""timestamp"":""2024-01-15 14:35:09.00 -0500"",""app_version"":""1.6.1"",""slice_uuid"":""a5992708-d5b4-36ec-ac0a-e525f6105b56"",""build_version"":""1.6.1.0"",""platform"":1,""bundleID"":""edu.ucsf.cgl.ChimeraX"",""share_with_app_devs"":0,""is_first_party"":0,""bug_type"":""309"",""os_version"":""macOS 14.2.1 (23C71)"",""roots_installed"":0,""name"":""ChimeraX"",""incident_id"":""FB177F63-89C0-421C-8AC5-FF03BA425523""} { ""uptime"" : 940000, ""procRole"" : ""Background"", ""version"" : 2, ""userID"" : 503, ""deployVersion"" : 210, ""modelCode"" : ""MacBookPro18,3"", ""coalitionID"" : 88308, ""osVersion"" : { ""train"" : ""macOS 14.2.1"", ""build"" : ""23C71"", ""releaseType"" : ""User"" }, ""captureTime"" : ""2024-01-15 14:35:05.5407 -0500"", ""codeSigningMonitor"" : 1, ""incident"" : ""FB177F63-89C0-421C-8AC5-FF03BA425523"", ""pid"" : 59731, ""translated"" : false, ""cpuType"" : ""ARM-64"", ""roots_installed"" : 0, ""bug_type"" : ""309"", ""procLaunch"" : ""2024-01-15 11:12:52.0506 -0500"", ""procStartAbsTime"" : 22326407264753, ""procExitAbsTime"" : 22617606448540, ""procName"" : ""ChimeraX"", ""procPath"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/MacOS\/ChimeraX"", ""bundleInfo"" : {""CFBundleShortVersionString"":""1.6.1"",""CFBundleVersion"":""1.6.1.0"",""CFBundleIdentifier"":""edu.ucsf.cgl.ChimeraX""}, ""storeInfo"" : {""deviceIdentifierForVendor"":""4009FAF6-E9AB-50BF-9F04-0B89775FDB68"",""thirdParty"":true}, ""parentProc"" : ""launchd"", ""parentPid"" : 1, ""coalitionName"" : ""edu.ucsf.cgl.ChimeraX"", ""crashReporterKey"" : ""99DA3F3A-511F-2832-8536-7AEDB6E711CB"", ""codeSigningID"" : ""edu.ucsf.cgl.ChimeraX"", ""codeSigningTeamID"" : ""LWV8X224YF"", ""codeSigningFlags"" : 570491649, ""codeSigningValidationCategory"" : 6, ""codeSigningTrustLevel"" : 4294967295, ""instructionByteStream"" : {""beforePC"":""fyMD1f17v6n9AwCRXOD\/l78DAJH9e8Go\/w9f1sADX9YQKYDSARAA1A=="",""atPC"":""AwEAVH8jA9X9e7+p\/QMAkVHg\/5e\/AwCR\/XvBqP8PX9bAA1\/WcAqA0g==""}, ""wakeTime"" : 15899, ""sleepWakeUUID"" : ""B9658683-F3DA-41DD-9614-B1FD3EFC4123"", ""sip"" : ""enabled"", ""vmRegionInfo"" : ""0x18 is not in any region. Bytes before following region: 105555263750120\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n MALLOC_NANO 600080000000-6000a0000000 [512.0M] rw-\/rwx SM=PRV "", ""exception"" : {""codes"":""0x0000000000000001, 0x0000000000000018"",""rawCodes"":[1,24],""type"":""EXC_BAD_ACCESS"",""signal"":""SIGSEGV"",""subtype"":""KERN_INVALID_ADDRESS at 0x0000000000000018""}, ""termination"" : {""flags"":0,""code"":11,""namespace"":""SIGNAL"",""indicator"":""Segmentation fault: 11"",""byProc"":""ChimeraX"",""byPid"":59731}, ""vmregioninfo"" : ""0x18 is not in any region. 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""e2187dfe-1fb4-3b47-874e-a0a6291e51b2"", ""path"" : ""\/System\/Library\/Frameworks\/Carbon.framework\/Versions\/A\/Frameworks\/HIToolbox.framework\/Versions\/A\/HIToolbox"", ""name"" : ""HIToolbox"" }, { ""source"" : ""P"", ""arch"" : ""arm64e"", ""base"" : 6528823296, ""size"" : 607048, ""uuid"" : ""324e4ad9-e01f-3183-b09f-3e20b326643a"", ""path"" : ""\/usr\/lib\/dyld"", ""name"" : ""dyld"" }, { ""size"" : 0, ""source"" : ""A"", ""base"" : 0, ""uuid"" : ""00000000-0000-0000-0000-000000000000"" } ], ""sharedCache"" : { ""base"" : 6528073728, ""size"" : 4061216768, ""uuid"" : ""f9ddd844-7f3f-34bd-be29-f0c72d5e5449"" }, ""vmSummary"" : ""ReadOnly portion of Libraries: Total=1.8G resident=0K(0%) swapped_out_or_unallocated=1.8G(100%)\nWritable regions: Total=22.7G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=22.7G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 256K 2 \nActivity Tracing 256K 1 \nCG image 656K 29 \nColorSync 608K 30 \nCoreAnimation 2080K 130 \nCoreGraphics 48K 3 \nCoreUI image data 5568K 62 \nFoundation 32K 2 \nKernel Alloc Once 32K 1 \nMALLOC 21.9G 329 \nMALLOC guard page 384K 24 \nMach message 64K 2 \nOpenGL GLSL 384K 4 \nSTACK GUARD 448K 28 \nStack 157.6M 29 \nStack Guard 56.0M 1 \nVM_ALLOCATE 563.9M 767 \nVM_ALLOCATE (reserved) 160.0M 4 reserved VM address space (unallocated)\n__AUTH 2148K 387 \n__AUTH_CONST 31.5M 608 \n__CTF 824 1 \n__DATA 21.8M 742 \n__DATA_CONST 40.6M 755 \n__DATA_DIRTY 1979K 224 \n__FONT_DATA 4K 1 \n__GLSLBUILTINS 5174K 1 \n__INFO_FILTER 8 1 \n__LINKEDIT 919.5M 142 \n__OBJC_RO 71.1M 1 \n__OBJC_RW 2168K 1 \n__TEXT 910.5M 772 \ndyld private memory 272K 2 \nmapped file 531.0M 76 \nshared memory 3152K 25 \n=========== ======= ======= \nTOTAL 25.3G 5187 \nTOTAL, minus reserved VM space 25.1G 5187 \n"", ""legacyInfo"" : { ""threadTriggered"" : { ""name"" : ""CrBrowserMain"", ""queue"" : ""com.apple.main-thread"" } }, ""logWritingSignature"" : ""f47fc436820918b772714bd8744632e1f663cf90"", ""trialInfo"" : { ""rollouts"" : [ { ""rolloutId"" : ""5f72dc58705eff005a46b3a9"", ""factorPackIds"" : { }, ""deploymentId"" : 240000015 }, { ""rolloutId"" : ""60186475825c62000ccf5450"", ""factorPackIds"" : { }, ""deploymentId"" : 240000069 } ], ""experiments"" : [ { ""treatmentId"" : ""52e9806b-48cf-4718-ba06-6aaa79468566"", ""experimentId"" : ""6553f184553f07431fda611f"", ""deploymentId"" : 400000004 } ] } } ===== Log before crash start ===== UCSF ChimeraX version: 1.6.1 (2023-05-09) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Users/TEST/Downloads/emd_15793.map Opened emd_15793.map as #1, grid size 560,560,560, pixel 0.731, shown at level 0.264, step 4, values float32 > volume #1 step 2 > open 7b0X Summary of feedback from opening 7b0X fetched from pdb --- notes | Fetching compressed mmCIF 7b0x from http://files.rcsb.org/download/7b0x.cif Fetching CCD EDO from https://files.wwpdb.org/pub/pdb/refdata/chem_comp/O/EDO/EDO.cif 7b0x title: Crystal structure of the ternary complex of the E. coli type 1 pilus proteins FimC, FimI and the N-terminal domain of FimD [more info...] Chain information for 7b0x #2 --- Chain | Description | UniProt C | Chaperone protein FimC | FIMC_ECOLI 1-205 D | Outer membrane usher protein FimD | FIMD_ECOLI 1-125 I | Fimbrin-like protein FimI | FIMI_ECOLI 21-160 Non-standard residues in 7b0x #2 --- EDO — 1,2-ethanediol (ethylene glycol) > close #2 > open 8b0X 8b0x title: Translating 70S ribosome in the unrotated state (P and E, tRNAs) [more info...] Chain information for 8b0x #2 --- Chain | Description | UniProt 0 | 50S ribosomal protein L33 | RL33_ECOLI 1-55 1 | 50S ribosomal protein L34 | RL34_ECOLI 1-46 2 | 50S ribosomal protein L35 | RL35_ECOLI 1-65 3 | 50S ribosomal protein L36 | RL36_ECOLI 1-38 A | 16S rRNA | B | 30S ribosomal protein S2 | RS2_ECOLI 1-241 C | 30S ribosomal protein S3 | RS3_ECOLI 1-233 D | 30S ribosomal protein S4 | RS4_ECOLI 1-206 E | 30S ribosomal protein S5 | RS5_ECOLI 1-167 F | 30S ribosomal protein S6 | RS6_ECOLI 1-135 G | 30S ribosomal protein S7 | RS7_ECOLI 1-179 H | 30S ribosomal protein S8 | RS8_ECOLI 1-130 I | 30S ribosomal protein S9 | RS9_ECOLI 1-130 J | 30S ribosomal protein S10 | RS10_ECOLI 1-103 K | 30S ribosomal protein S11 | RS11_ECOLI 1-130 L | 30S ribosomal protein S12 | RS12_ECOLI 1-124 M | 30S ribosomal protein S13 | RS13_ECOLI 1-118 N | 30S ribosomal protein S14 | RS14_ECOLI 1-101 O | 30S ribosomal protein S15 | RS15_ECOLI 1-89 P | 30S ribosomal protein S16 | RS16_ECOLI 1-82 Q | 30S ribosomal protein S17 | RS17_ECOLI 1-84 R | 30S ribosomal protein S18 | RS18_ECOLI 1-75 S | 30S ribosomal protein S19 | RS19_ECOLI 1-92 T | 30S ribosomal protein S20 | RS20_ECOLI 1-87 U | 30S ribosomal protein S21 | RS21_ECOLI 1-71 X | mRNA | Z | P-site tRNA | a | 23S rRNA | b | 5S rRNA | c | 50S ribosomal protein L2 | RL2_ECOLI 1-273 d | 50S ribosomal protein L3 | RL3_ECOLI 1-209 e | 50S ribosomal protein L4 | RL4_ECOLI 1-201 f | 50S ribosomal protein L5 | RL5_ECOLI 1-179 g | 50S ribosomal protein L6 | RL6_ECOLI 1-177 h | 50S ribosomal protein L9 | RL9_ECOLI 1-149 i | 50S ribosomal protein L13 | RL13_ECOLI 1-142 j | 50S ribosomal protein L14 | RL14_ECOLI 1-123 k | 50S ribosomal protein L15 | RL15_ECOLI 1-144 l | 50S ribosomal protein L16 | RL16_ECOLI 1-136 m | 50S ribosomal protein L17 | RL17_ECOLI 1-127 n | 50S ribosomal protein L18 | RL18_ECOLI 1-117 o | 50S ribosomal protein L19 | RL19_ECOLI 1-115 p | 50S ribosomal protein L20 | RL20_ECOLI 1-118 q | 50S ribosomal protein L21 | RL21_ECOLI 1-103 r | 50S ribosomal protein L22 | RL22_ECOLI 1-110 s | 50S ribosomal protein L23 | RL23_ECOLI 1-100 t | 50S ribosomal protein L24 | RL24_ECOLI 1-104 u | 50S ribosomal protein L25 | RL25_ECOLI 1-94 v | 50S ribosomal protein L27 | RL27_ECOLI 1-85 w | 50S ribosomal protein L28 | RL28_ECOLI 1-78 x | 50S ribosomal protein L29 | RL29_ECOLI 1-63 y | 50S ribosomal protein L30 | RL30_ECOLI 1-59 z | 50S ribosomal protein L32 | RL32_ECOLI 1-57 Non-standard residues in 8b0x #2 --- K — potassium ion MG — magnesium ion MS6 — (2S)-2-amino-4-(methylsulfanyl)butane-1-thiol ZN — zinc ion > preset cartoons/nucleotides ribbons/slabs Using preset: Cartoons/Nucleotides / Ribbons/Slabs Changed 139385 atom styles Preset expands to these ChimeraX commands: show nucleic hide protein|solvent|H surf hide style (protein|nucleic|solvent) & @@draw_mode=0 stick cartoon cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20 cartoon style ~(nucleic|strand) x round cartoon style (nucleic|strand) x rect nucleotides tube/slab shape box > ui mousemode right select > select /A:999 20 atoms, 21 bonds, 1 residue, 1 model selected > select /A:999 20 atoms, 21 bonds, 1 residue, 1 model selected > select add #2 151507 atoms, 151568 bonds, 7348 pseudobonds, 22062 residues, 4 models selected > select subtract #2 Nothing selected > color #1 #b2b2b2ff models > color zone #1 A,a,b distance 3 Expected a keyword > color zone #1 /A,a,b distance 3 Missing required ""near"" argument > color zone #1 near /A,a,b distance 3 Drag select of 1 emd_15793.map , 109 residues, 42 shapes > select clear > ui mousemode right select > ui mousemode right zoom > ui mousemode right translate > color zone #1 near /A,a,b distance 2 > hide #!2 models > show #!2 models > sequence chain #2/X Alignment identifier is 2/X > sequence chain #2/X Destroying pre-existing alignment with identifier 2/X Alignment identifier is 2/X > select /X:13 22 atoms, 24 bonds, 1 residue, 1 model selected > select /X:13-18 131 atoms, 147 bonds, 6 residues, 1 model selected > select add #2 151507 atoms, 151568 bonds, 7348 pseudobonds, 22062 residues, 4 models selected > select subtract #2 Nothing selected > color zone #1 near /A,X,Z,a,b distance 2 > select /X:13 22 atoms, 24 bonds, 1 residue, 1 model selected > select /X:13-18 131 atoms, 147 bonds, 6 residues, 1 model selected > color zone #1 near /A,X,Z,a,b distance 2.5 > select add #2 151507 atoms, 151568 bonds, 7348 pseudobonds, 22062 residues, 4 models selected > select subtract #2 Nothing selected > hide #!2 models > set bgColor white > lighting flat > graphics silhouettes false > graphics silhouettes true > lighting soft > lighting simple > graphics silhouettes false > graphics silhouettes true > lighting shadows true > lighting shadows false > lighting shadows true > lighting shadows false > show #!2 models > sequence chain #2/b Alignment identifier is 2/b > hide #!2 models > volume #1 step 1 > volume #1 step 2 > volume #1 step 4 > volume #1 step 2 > volume #1 style mesh > volume #1 style surface > volume #1 style image > volume #1 style surface > lighting flat > lighting full > lighting soft Unsupported scale factor (0.000000) detected on Display0 QPainter::begin: Paint device returned engine == 0, type: 3 ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.6.1 (2023-05-09) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 88 OpenGL renderer: Apple M1 Pro OpenGL vendor: Apple Python: 3.9.11 Locale: UTF-8 Qt version: PyQt6 6.4.2, Qt 6.4.2 Qt runtime version: 6.4.3 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro18,3 Model Number: MKGP3LL/A Chip: Apple M1 Pro Total Number of Cores: 8 (6 performance and 2 efficiency) Memory: 16 GB System Firmware Version: 10151.61.4 OS Loader Version: 10151.61.4 Software: System Software Overview: System Version: macOS 14.2.1 (23C71) Kernel Version: Darwin 23.2.0 Time since boot: 26 days, 21 hours, 30 minutes Graphics/Displays: Apple M1 Pro: Chipset Model: Apple M1 Pro Type: GPU Bus: Built-In Total Number of Cores: 14 Vendor: Apple (0x106b) Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-in Liquid Retina XDR Display Resolution: 3024 x 1964 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal DELL U2415: Resolution: 1920 x 1200 (WUXGA - Widescreen Ultra eXtended Graphics Array) UI Looks like: 1920 x 1200 @ 60.00Hz Mirror: Off Online: Yes Rotation: Supported Installed Packages: alabaster: 0.7.13 appdirs: 1.4.4 appnope: 0.1.3 asttokens: 2.2.1 Babel: 2.12.1 backcall: 0.2.0 beautifulsoup4: 4.11.2 blockdiag: 3.0.0 build: 0.10.0 certifi: 2021.10.8 cftime: 1.6.2 charset-normalizer: 3.1.0 ChimeraX-AddCharge: 1.5.9.1 ChimeraX-AddH: 2.2.5 ChimeraX-AlignmentAlgorithms: 2.0.1 ChimeraX-AlignmentHdrs: 3.3.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.9.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.3 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.43.10 ChimeraX-AtomicLibrary: 10.0.6 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3.2 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.1 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.8 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.2 ChimeraX-ChangeChains: 1.0.2 ChimeraX-CheckWaters: 1.3.1 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.3 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.6.1 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.4.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2 ChimeraX-DistMonitor: 1.4 ChimeraX-DockPrep: 1.1.1 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-Label: 1.1.7 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.2 ChimeraX-Map: 1.1.4 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.0.12 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.12 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.9 ChimeraX-ModelPanel: 1.3.7 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.0 ChimeraX-NRRD: 1.0 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.10.1 ChimeraX-PDB: 2.7.2 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 3.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.1 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.8.3 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.1 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.10.3 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1.2 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Topography: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.28.4 ChimeraX-uniprot: 2.2.2 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.1 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.1.3 contourpy: 1.0.7 cxservices: 1.2.2 cycler: 0.11.0 Cython: 0.29.33 debugpy: 1.6.7 decorator: 5.1.1 docutils: 0.19 executing: 1.2.0 filelock: 3.9.0 fonttools: 4.39.3 funcparserlib: 1.0.1 grako: 3.16.5 h5py: 3.8.0 html2text: 2020.1.16 idna: 3.4 ihm: 0.35 imagecodecs: 2022.2.22 imagesize: 1.4.1 importlib-metadata: 6.6.0 ipykernel: 6.21.1 ipython: 8.10.0 ipython-genutils: 0.2.0 ipywidgets: 8.0.6 jedi: 0.18.2 Jinja2: 3.1.2 jupyter-client: 8.0.2 jupyter-core: 5.3.0 jupyterlab-widgets: 3.0.7 kiwisolver: 1.4.4 line-profiler: 4.0.2 lxml: 4.9.2 lz4: 4.3.2 MarkupSafe: 2.1.2 matplotlib: 3.6.3 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.5.6 netCDF4: 1.6.2 networkx: 2.8.8 nibabel: 5.0.1 nptyping: 2.5.0 numexpr: 2.8.4 numpy: 1.23.5 openvr: 1.23.701 packaging: 21.3 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 9.3.0 pip: 23.0 pkginfo: 1.9.6 platformdirs: 3.5.0 prompt-toolkit: 3.0.38 psutil: 5.9.4 ptyprocess: 0.7.0 pure-eval: 0.2.2 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.14.0 pynrrd: 1.0.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 pyproject-hooks: 1.0.0 PyQt6-commercial: 6.4.2 PyQt6-Qt6: 6.4.3 PyQt6-sip: 13.4.1 PyQt6-WebEngine-commercial: 6.4.0 PyQt6-WebEngine-Qt6: 6.4.3 python-dateutil: 2.8.2 pytz: 2023.3 pyzmq: 25.0.2 qtconsole: 5.4.0 QtPy: 2.3.1 RandomWords: 0.4.0 requests: 2.28.2 scipy: 1.9.3 setuptools: 67.4.0 setuptools-scm: 7.0.5 sfftk-rw: 0.7.3 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.4.1 sphinx: 6.1.3 sphinx-autodoc-typehints: 1.22 sphinxcontrib-applehelp: 1.0.4 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.1 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 stack-data: 0.6.2 tables: 3.7.0 tcia-utils: 1.2.0 tifffile: 2022.10.10 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.3.1 traitlets: 5.9.0 typing-extensions: 4.5.0 tzdata: 2023.3 urllib3: 1.26.15 wcwidth: 0.2.6 webcolors: 1.12 wheel: 0.38.4 wheel-filename: 1.4.1 widgetsnbextension: 4.0.7 zipp: 3.15.0 }}} " defect closed normal Window Toolkit duplicate Eric Pettersen all ChimeraX