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Changes between Initial Version and Version 1 of Ticket #14917

Timestamp:: Apr 8, 2024, 12:00:51 PM (20 months ago)
Author:: Eric Pettersen
Comment:

Legend:

: Unmodified
: Added
: Removed
: Modified

Ticket #14917
- Property Component Unassigned → Structure Analysis
- Property Owner set to Eric Pettersen
- Property Platform → all
- Property Project → ChimeraX
- Property Status new → accepted
- Property Summary ChimeraX bug report submission → Angle tool allows decimal places to go to -1

Ticket #14917 – Description

-              initial
+              v1
 atoms, 85540 bonds, 35 pseudobonds, 9952 residues, 8 models selected
+> select add #9
+atoms, 107300 bonds, 43 pseudobonds, 12472 residues, 10 models selected
+> color (#!1,3,5,7,9 & sel) light gray
+> select clear
+> select ::name="POV"
+atoms, 4360 bonds, 124 residues, 5 models selected
+> color sel orange
+> select clear
+> select ::name="LIG"
+atoms, 264 bonds, 12 residues, 3 models selected
+> select add ::name="ISO"
+atoms, 488 bonds, 20 residues, 4 models selected
+> color sel red
+> select clear
+> save "D:/Yao Lab/Data/Structures of hTRPV3/h & mTRPV3_Essential
+> Oil_Structure/Paper Writing/202403_hV3_Essential Oil_Figures/ChimeraX
+> sessions/2400309_hV3_5MapsStructuresAligned.cxs" includeMaps true
+——— End of log from Sat Mar 9 16:11:37 2024 ———
+opened ChimeraX session
+> hide #!9 models
+> hide #!7 models
+> hide #!5 models
+> hide #!3 models
+> show #!2 models
+> volume #2 level 0.384
+> volume #2 level 0.4706
+> select add #1
+atoms, 21265 bonds, 8 pseudobonds, 2476 residues, 2 models selected
+> select subtract #1
+Nothing selected
+> select add #1
+atoms, 21265 bonds, 8 pseudobonds, 2476 residues, 2 models selected
+> select subtract #1
+Nothing selected
+> select clear
+> hide #!2 models
+> show #!2 models
+QWindowsWindow::setGeometry: Unable to set geometry 1150x998+2678+1436 (frame:
+x1054+2667+1391) on QWidgetWindow/"QDockWidgetClassWindow" on
+"\\\\.\DISPLAY2". Resulting geometry: 1154x1013+2676+1423 (frame:
+x1069+2665+1378) margins: 11, 45, 11, 11 minimum size: 73x51 maximum size:
+x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
+maxtrack=POINT(x=786453, y=786487), mintrack=POINT(x=132, y=133)))
+> color #1 #bababaff
+> color #1 #7d7d7dff
+> color #1 #bababaff
+> color #1 #7d7d7dff
+> color #1 #bababaff
+> hide #!2 models
+> select clear
+[Repeated 1 time(s)]
+> select #1/A:137
+atoms, 8 bonds, 1 residue, 1 model selected
+> select clear
+Drag select of 14 residues
+Drag select of 12 residues
+> select up
+atoms, 416 bonds, 54 residues, 1 model selected
+> select up
+atoms, 5506 bonds, 672 residues, 1 model selected
+> select up
+atoms, 5544 bonds, 676 residues, 1 model selected
+> select up
+atoms, 10113 bonds, 1224 residues, 1 model selected
+> select up
+atoms, 10633 bonds, 1238 residues, 1 model selected
+> select up
+atoms, 21265 bonds, 2476 residues, 1 model selected
+> select down
+atoms, 10633 bonds, 1238 residues, 1 model selected
+> color #1 #7d7d7dff
+> select clear
+Drag select of 8 residues
+Drag select of 9 residues
+> select up
+atoms, 222 bonds, 29 residues, 1 model selected
+> select up
+atoms, 458 bonds, 60 residues, 1 model selected
+> select up
+atoms, 634 bonds, 84 residues, 1 model selected
+> select up
+atoms, 5506 bonds, 672 residues, 1 model selected
+> select up
+atoms, 5544 bonds, 676 residues, 1 model selected
+> select up
+atoms, 10113 bonds, 1224 residues, 1 model selected
+> select up
+atoms, 10633 bonds, 1238 residues, 1 model selected
+> select up
+atoms, 21265 bonds, 2476 residues, 1 model selected
+> select down
+atoms, 10633 bonds, 1238 residues, 1 model selected
+> color #1 #bababaff
+> color #1 #7d7d7dff
+> color sel orange
+> color sel #bababaff
+> color sel #7d7d7dff
+> select clear
+Drag select of 11 residues, 1 pseudobonds
+Drag select of 8 residues, 1 pseudobonds
+> select up
+atoms, 353 bonds, 2 pseudobonds, 47 residues, 2 models selected
+> select up
+atoms, 5506 bonds, 2 pseudobonds, 672 residues, 2 models selected
+> select up
+atoms, 5544 bonds, 2 pseudobonds, 676 residues, 2 models selected
+> select up
+atoms, 10112 bonds, 2 pseudobonds, 1224 residues, 2 models selected
+> select up
+atoms, 10632 bonds, 2 pseudobonds, 1238 residues, 2 models selected
+> select up
+atoms, 21265 bonds, 8 pseudobonds, 2476 residues, 2 models selected
+> select down
+atoms, 10632 bonds, 2 pseudobonds, 1238 residues, 2 models selected
+> color (#!1 & sel) #bababaff
+> select clear
+> select ::name="POV"
+atoms, 4360 bonds, 124 residues, 5 models selected
+> color (#!1 & sel) orange
+> select clear
+> show #!2 models
+> ui tool show "Color Zone"
+> color zone #2 near #1 distance 2.5
+> lighting soft
+> graphics silhouettes true
+> lighting shadows true intensity 0.5
+> lighting shadows false
+> hide #!2 models
+> show #!2 models
+> hide #!1 models
+> show #!1 models
+> hide #!2 models
+> show #!2 models
+> volume #2 level 0.3776
+> ui tool show "Side View"
+> lighting simple
+> graphics silhouettes false
+> lighting soft
+> graphics silhouettes true
+> lighting shadows true intensity 0.5
+> lighting shadows false
+> view
+> lighting simple
+> volume #2 level 0.444
+> hide #!2 models
+> show #!2 models
+> hide #!1 models
+> show #!1 models
+> hide #!2 models
+> hide #!1 models
+> show #!3 models
+> show #!4 models
+> hide #!4 models
+Drag select of 3 residues
+Drag select of 4 residues
+> select up
+atoms, 292 bonds, 36 residues, 1 model selected
+> select up
+atoms, 5654 bonds, 684 residues, 1 model selected
+> select up
+atoms, 5900 bonds, 714 residues, 1 model selected
+> select up
+atoms, 10354 bonds, 1244 residues, 1 model selected
+> select up
+atoms, 10824 bonds, 1258 residues, 1 model selected
+> select up
+atoms, 21649 bonds, 2516 residues, 1 model selected
+> select down
+atoms, 10824 bonds, 1258 residues, 1 model selected
+> color sel #d6e9f8ff
+> color sel #787878ff
+> color sel #e4bb8fff
+> color sel #f0f0f0ff
+> color sel #dadadaff
+> color sel #f0f0f0ff
+> color sel #ffffffff
+> color sel #fafafaff
+> color sel #f0f0f0ff
+> color sel #ffffffff
+> color sel #fafafaff
+> color sel #f0f0f0ff
+> color sel #ffffffff
+> color sel #d35154ff
+> color sel #ffffffff
+> color sel #3b7520ff
+> color sel #ffffffff
+> color sel #3b7520ff
+> color sel #ffffffff
+> color sel #0094a4ff
+> color sel #0099a7ff
+> color sel #0097a5ff
+> color sel #008d9aff
+> color sel #008a96ff
+> color sel #008995ff
+> color sel #008793ff
+> color sel #008591ff
+> color sel #008490ff
+> color sel #00838fff
+> color sel #00818dff
+> color sel #007d88ff
+> color sel #007984ff
+> color sel #007782ff
+> color sel #00747fff
+> color sel #00747eff
+> color sel #00737dff
+> color sel #00707aff
+> color sel #006f79ff
+> color sel #006e78ff
+> color sel #006c76ff
+> color sel #006b75ff
+> color sel #006a74ff
+> color sel #006973ff
+> color sel #006871ff
+> color sel #006770ff
+> color sel #00666fff
+> color sel #00636cff
+> color sel #00646dff
+> color sel #006871ff
+> color sel #006973ff
+> color sel #006b75ff
+> color sel #006c76ff
+> color sel #006e78ff
+> color sel #00707aff
+> color sel #c78500ff
+> color sel #7785ffff
+> color sel #0178e5ff
+> color sel #d7e9f8ff
+> color sel #f9f9f9ff
+> color sel #f0f0f0ff
+> color sel #ffffffff
+> color sel #f0f0f0ff
+> color sel #f9f9f9ff
+> color sel #787878ff
+> color sel #f9f9f9ff
+> color sel #f0f0f0ff
+> color sel #ffffffff
+> color sel #dcdcdcff
+> color sel #f0f0f0ff
+> color sel #ffffffff
+> color sel #f6ddddff
+> color sel #ffffffff
+> color sel #0094a4ff
+> color sel #172c51ff
+> color sel #ffffffff
+> color sel #6c4796ff
+> color sel #ffffffff
+> color sel #e63323ff
+> color sel #ffffffff
+> color sel #000000ff
+> color sel #007dbcff
+> color sel #ffffffff
+> color sel #2c5f15ff
+> color sel #ffffffff
+> color sel #c72326ff
+> color sel #ffffffff
+> color sel #000000ff
+> color sel #ffffffff
+> color sel #0094a4ff
+> color sel #0099a7ff
+> color sel #0097a5ff
+> color sel #0095a2ff
+> color sel #00929fff
+> color sel #00919eff
+> color sel #008f9cff
+> color sel #008b98ff
+> color sel #008a96ff
+> color sel #008894ff
+> color sel #008793ff
+> color sel #008591ff
+> color sel #008490ff
+> color sel #00838fff
+> color sel #00818dff
+> color sel #00808cff
+> color sel #007f8bff
+> color sel #007f8aff
+> select clear
+Drag select of 25 residues, 1 pseudobonds
+Drag select of 10 residues
+> select up
+atoms, 892 bonds, 1 pseudobond, 110 residues, 2 models selected
+> select up
+atoms, 5836 bonds, 1 pseudobond, 708 residues, 2 models selected
+> select up
+atoms, 5900 bonds, 1 pseudobond, 714 residues, 2 models selected
+> select up
+atoms, 10354 bonds, 1 pseudobond, 1244 residues, 2 models selected
+> select up
+atoms, 10824 bonds, 1 pseudobond, 1258 residues, 2 models selected
+> select up
+atoms, 21649 bonds, 8 pseudobonds, 2516 residues, 2 models selected
+> select down
+atoms, 10824 bonds, 1 pseudobond, 1258 residues, 2 models selected
+> color (#!3 & sel) #07a6c2ff
+> color (#!3 & sel) #d7e9f8ff
+> color (#!3 & sel) #f9f9f9ff
+> color (#!3 & sel) #d7e9f8ff
+> color (#!3 & sel) #f9f9f9ff
+> color (#!3 & sel) #f0f0f0ff
+> color (#!3 & sel) #bebebeff
+> color (#!3 & sel) #f0f0f0ff
+> color (#!3 & sel) #ffffffff
+> color (#!3 & sel) #f0f0f0ff
+> color (#!3 & sel) #ffffffff
+> color (#!3 & sel) #0094a4ff
+> color (#!3 & sel) #009dabff
+> color (#!3 & sel) #00a2b1ff
+> color (#!3 & sel) #00aab9ff
+> color (#!3 & sel) #00aebeff
+> color (#!3 & sel) #00afbfff
+> color (#!3 & sel) #00b1c1ff
+> color (#!3 & sel) #00b3c3ff
+> color (#!3 & sel) #00b5c5ff
+> color (#!3 & sel) #00b6c6ff
+> color (#!3 & sel) #00b9caff
+> color (#!3 & sel) #00bdceff
+> color (#!3 & sel) #00becfff
+> color (#!3 & sel) #00c0d1ff
+> select clear
+> select ::name="POV"
+atoms, 4360 bonds, 124 residues, 5 models selected
+> color (#!3 & sel) orange
+> select clear
+> select #3/A:827@C09
+atom, 1 residue, 1 model selected
+> select add #3/C:827@C02
+atoms, 1 bond, 2 residues, 1 model selected
+> select add #3/D:827@C06
+atoms, 1 bond, 3 residues, 1 model selected
+> select up
+atoms, 1 bond, 4 residues, 1 model selected
+> select up
+atoms, 112 bonds, 4 residues, 1 model selected
+> color sel red
+[Repeated 1 time(s)]
+> color sel #ff0000ff
+> color sel #ff00ffff
+> color sel #ff007fff
+> color sel #ff00ffff
+> color sel #ff007fff
+> color sel #ff00ffff
+> color sel byhetero
+> select clear
+> show #!4 models
+> color zone #4 near #3 distance 2.5
+> color zone #4 near #3 distance 3
+> color zone #4 near #3 distance 3.6
+[Repeated 1 time(s)]
+> volume #4 level 0.2899
+> color zone #4 near #3 distance 3.6
+> color zone #4 near #3 distance 2
+> color zone #4 near #3 distance 2.5
+[Repeated 1 time(s)]
+> select #3/A:827@C06
+atom, 1 residue, 1 model selected
+> select up
+atoms, 28 bonds, 1 residue, 1 model selected
+> color sel magenta
+> color zone #4 near #3 distance 2.5
+> lighting soft
+> lighting shadows true intensity 0.5
+> lighting shadows false
+> graphics silhouettes false
+> graphics silhouettes true
+> volume #4 level 0.3789
+> volume #4 level 0.3314
+> select clear
+> hide #!4 models
+> show #!4 models
+> hide #!4 models
+Drag select of 19 residues
+Drag select of 25 residues, 1 pseudobonds
+> select up
+atoms, 998 bonds, 1 pseudobond, 122 residues, 2 models selected
+> select up
+atoms, 5745 bonds, 1 pseudobond, 696 residues, 2 models selected
+> select up
+atoms, 5900 bonds, 1 pseudobond, 714 residues, 2 models selected
+> select up
+atoms, 10354 bonds, 1 pseudobond, 1244 residues, 2 models selected
+> select up
+atoms, 10824 bonds, 1 pseudobond, 1258 residues, 2 models selected
+> select up
+atoms, 21649 bonds, 8 pseudobonds, 2516 residues, 2 models selected
+> select up
+atoms, 21649 bonds, 8 pseudobonds, 2516 residues, 2 models selected
+> select down
+pseudobonds, 1 model selected
+> select down
+atoms, 10824 bonds, 1 pseudobond, 1258 residues, 2 models selected
+> hide sel cartoons
+> hide sel atoms
+> view
+> select add #3
+atoms, 21649 bonds, 8 pseudobonds, 2516 residues, 2 models selected
+> hide sel cartoons
+> show sel cartoons
+> select clear
+> select add #3
+atoms, 21649 bonds, 8 pseudobonds, 2516 residues, 2 models selected
+> select clear
+[Repeated 1 time(s)]
+> select ligand
+atoms, 4848 bonds, 144 residues, 5 models selected
+> show sel & #!3 atoms
+> select clear
+> undo
+[Repeated 2 time(s)]
+> select clear
+> hide #!3 models
+> show #!4 models
+> hide #!4 models
+> show #!5 models
+> hide #!5 models
+> show #!5 models
+> show #!6 models
+> volume #6 level 0.3413
+> hide #!5 models
+> show #!5 models
+> hide #!6 models
+Drag select of 12 residues
+Drag select of 7 residues, 1 pseudobonds
+> select up
+atoms, 269 bonds, 1 pseudobond, 33 residues, 2 models selected
+> select up
+atoms, 5300 bonds, 1 pseudobond, 643 residues, 2 models selected
+> select up
+atoms, 5365 bonds, 1 pseudobond, 651 residues, 2 models selected
+> select up
+atoms, 10038 bonds, 1 pseudobond, 1208 residues, 2 models selected
+> select up
+atoms, 10480 bonds, 1 pseudobond, 1222 residues, 2 models selected
+> select up
+atoms, 20960 bonds, 8 pseudobonds, 2444 residues, 2 models selected
+> select down
+atoms, 10480 bonds, 1 pseudobond, 1222 residues, 2 models selected
+> color (#!5 & sel) #55007fff
+> color (#!5 & sel) #560081ff
+> color (#!5 & sel) #5a0087ff
+> color (#!5 & sel) #5c008aff
+> color (#!5 & sel) #5d008bff
+> color (#!5 & sel) #610091ff
+> select clear
+Drag select of 28 residues
+Drag select of 12 residues, 1 pseudobonds
+Drag select of 9 residues
+> select up
+atoms, 552 bonds, 1 pseudobond, 67 residues, 2 models selected
+> select up
+atoms, 5552 bonds, 1 pseudobond, 674 residues, 2 models selected
+> select up
+atoms, 5584 bonds, 1 pseudobond, 678 residues, 2 models selected
+> select up
+atoms, 10038 bonds, 1 pseudobond, 1208 residues, 2 models selected
+> select up
+atoms, 10480 bonds, 1 pseudobond, 1222 residues, 2 models selected
+> select up
+atoms, 20960 bonds, 8 pseudobonds, 2444 residues, 2 models selected
+> select down
+atoms, 10480 bonds, 1 pseudobond, 1222 residues, 2 models selected
+> color (#!5 & sel) #600090ff
+> color (#!5 & sel) #5a0087ff
+> color (#!5 & sel) #560081ff
+> color (#!5 & sel) #68009cff
+> color (#!5 & sel) #9400deff
+> color (#!5 & sel) #aa00ffff
+> color (#!5 & sel) #ac05ffff
+> color (#!5 & sel) #ab03ffff
+> color (#!5 & sel) #b803ffff
+> color (#!5 & sel) #c800ffff
+> select clear
+> select ::name="POV"
+atoms, 4360 bonds, 124 residues, 5 models selected
+> color (#!5 & sel) orange
+> select clear
+[Repeated 1 time(s)]
+> select #5/A:829@C11
+atom, 1 residue, 1 model selected
+> select add #5/C:827@C08
+atoms, 1 bond, 2 residues, 1 model selected
+> select add #5/D:828@C08
+atoms, 1 bond, 3 residues, 1 model selected
+> select up
+atoms, 1 bond, 4 residues, 1 model selected
+> select up
+atoms, 112 bonds, 4 residues, 1 model selected
+> color sel #55ff00ff
+> show #!3 models
+> hide #!3 models
+> color sel #ff007fff
+> color sel #ff0000ff
+> color sel #ff007fff
+> color sel #ff55ffff
+> color sel #ffaa00ff
+> color sel #ffff00ff
+> show #!3 models
+> hide #!5 models
+> show #!5 models
+> hide #!3 models
+> color sel #ff55ffff
+> color sel #ffaaffff
+> color sel #ffff00ff
+> show #!6 models
+> color zone #6 near #5 distance 2.5
+> color zone #6 near #5 distance 2.4
+> color zone #6 near #5 distance 2.3
+> color zone #6 near #5 distance 2.4
+> show #!3 models
+> hide #!5 models
+> show #!5 models
+> hide #!6 models
+> hide #!3 models
+> hide #!5 models
+> select clear
+> show #!4 models
+> show #!6 models
+> hide #!6 models
+> hide #!4 models
+> show #!4 models
+> show #!6 models
+> hide #!4 models
+> show #!3 models
+> hide #!6 models
+> show #!6 models
+> show #!4 models
+> hide #!3 models
+> hide #!6 models
+> show #!6 models
+> hide #!6 models
+> show #!3 models
+> hide #!3 models
+> show #!6 models
+> hide #!4 models
+> show #!4 models
+> hide #!6 models
+> show #!6 models
+> show #!3 models
+> hide #!4 models
+> hide #!6 models
+Drag select of 11 residues
+Drag select of 10 residues
+> select up
+atoms, 525 bonds, 65 residues, 1 model selected
+> select up
+atoms, 5654 bonds, 684 residues, 1 model selected
+> select up
+atoms, 5900 bonds, 714 residues, 1 model selected
+> select up
+atoms, 10354 bonds, 1244 residues, 1 model selected
+> select up
+atoms, 10824 bonds, 1258 residues, 1 model selected
+> select up
+atoms, 21649 bonds, 2516 residues, 1 model selected
+> select down
+atoms, 10824 bonds, 1258 residues, 1 model selected
+> select down
+atoms, 10354 bonds, 1244 residues, 1 model selected
+> select ~sel & ##selected
+atoms, 11295 bonds, 4 pseudobonds, 1272 residues, 2 models selected
+> select #3/C:192
+atoms, 4 bonds, 1 residue, 1 model selected
+Drag select of 5 residues, 1 pseudobonds
+> select clear
+Drag select of 4 residues, 1 pseudobonds
+Drag select of 2 residues
+> select up
+atoms, 292 bonds, 1 pseudobond, 36 residues, 2 models selected
+> select up
+atoms, 5654 bonds, 1 pseudobond, 684 residues, 2 models selected
+> select up
+atoms, 5900 bonds, 1 pseudobond, 714 residues, 2 models selected
+> select up
+atoms, 10354 bonds, 1 pseudobond, 1244 residues, 2 models selected
+> select up
+atoms, 10824 bonds, 1 pseudobond, 1258 residues, 2 models selected
+> select up
+atoms, 21649 bonds, 8 pseudobonds, 2516 residues, 2 models selected
+> select down
+atoms, 10824 bonds, 1 pseudobond, 1258 residues, 2 models selected
+> select down
+atoms, 10354 bonds, 1 pseudobond, 1244 residues, 2 models selected
+> color (#!3 & sel) #007f8aff
+> color (#!3 & sel) #00828bff
+> color (#!3 & sel) #007b84ff
+> color (#!3 & sel) #007078ff
+> color (#!3 & sel) #00666dff
+> color (#!3 & sel) #005b62ff
+> color (#!3 & sel) #005b61ff
+> color (#!3 & sel) #00585eff
+> color (#!3 & sel) #00555bff
+> color (#!3 & sel) #00545aff
+> color (#!3 & sel) #00555bff
+> select clear
+> color zone #4 near #3 distance 2.5
+> show #!4 models
+> hide #!3 models
+> hide #!4 models
+> show #!4 models
+> show #!6 models
+> hide #!4 models
+> show #!4 models
+> hide #!6 models
+> show #!6 models
+> hide #!4 models
+> hide #!6 models
+> show #!7 models
+> show #!8 models
+> hide #!8 models
+Drag select of 11 residues
+Drag select of 4 residues
+> select up
+atoms, 387 bonds, 48 residues, 1 model selected
+> select up
+atoms, 5654 bonds, 684 residues, 1 model selected
+> select up
+atoms, 5978 bonds, 724 residues, 1 model selected
+> select up
+atoms, 10350 bonds, 1244 residues, 1 model selected
+> select up
+atoms, 10370 bonds, 1246 residues, 1 model selected
+> select down
+atoms, 10350 bonds, 1244 residues, 1 model selected
+> select up
+atoms, 10370 bonds, 1246 residues, 1 model selected
+> select up
+atoms, 21666 bonds, 2516 residues, 1 model selected
+> select down
+atoms, 10370 bonds, 1246 residues, 1 model selected
+> select down
+atoms, 10350 bonds, 1244 residues, 1 model selected
+> color sel #cbcbffff
+> color sel #ffaa00ff
+> color sel #ffaa7fff
+> color sel #ffaa00ff
+> color sel #ffff00ff
+> color sel #ffff7fff
+> color sel #ffff00ff
+> color sel #d9eaf8ff
+> color sel #f0f0f0ff
+> color sel #f8f5f2ff
+> color sel #f0f0f0ff
+> color sel #000000ff
+> color sel #fcfefeff
+> color sel #fbfb3bff
+> color sel #fefe3cff
+> color sel #fdfd3cff
+> color sel #f4f439ff
+> color sel #878720ff
+> color sel #78781cff
+> color sel #82821fff
+> color sel #888820ff
+> color sel #8c8c21ff
+> color sel #8d8d21ff
+> color sel #8f8f22ff
+> color sel #919122ff
+> color sel #909022ff
+> color sel #8c8c21ff
+> color sel #8b8b21ff
+> color sel #84841fff
+> color sel #82821fff
+> color sel #878720ff
+> color sel #82821fff
+> select clear
+Drag select of 5 residues
+Drag select of 8 residues, 1 pseudobonds
+> select up
+atoms, 237 bonds, 1 pseudobond, 27 residues, 2 models selected
+> select up
+atoms, 5654 bonds, 1 pseudobond, 684 residues, 2 models selected
+> select up
+atoms, 5978 bonds, 1 pseudobond, 724 residues, 2 models selected
+> select up
+atoms, 10350 bonds, 1 pseudobond, 1244 residues, 2 models selected
+> select up
+atoms, 10370 bonds, 1 pseudobond, 1246 residues, 2 models selected
+> select down
+atoms, 10350 bonds, 1 pseudobond, 1244 residues, 2 models selected
+> color (#!7 & sel) #00d200ff
+> color (#!7 & sel) #82821fff
+> color (#!7 & sel) #00d200ff
+> color (#!7 & sel) #82821fff
+> color (#!7 & sel) #83831fff
+> color (#!7 & sel) #8f8f22ff
+> color (#!7 & sel) #adad29ff
+> color (#!7 & sel) #cbcb31ff
+> color (#!7 & sel) #d4d433ff
+> color (#!7 & sel) #d3d332ff
+> color (#!7 & sel) #cece31ff
+> color (#!7 & sel) #c7c730ff
+> color (#!7 & sel) #c2c22eff
+> color (#!7 & sel) #82821fff
+> color (#!7 & sel) #c2c22eff
+> color (#!7 & sel) #82821fff
+> color (#!7 & sel) #c2c22eff
+> select clear
+> show #!8 models
+> color zone #8 near #7 distance 2.5
+> volume #8 level 0.1508
+> volume #8 level 0.1265
+> volume #8 level 0.09925
+> show #!5 models
+> hide #!7 models
+> show #!7 models
+> hide #!8 models
+> hide #!7 models
+> hide #!5 models
+> show #!6 models
+> hide #!6 models
+> show #!8 models
+> show #!6 models
+> hide #!6 models
+> hide #!8 models
+> show #!8 models
+> hide #!8 models
+> show #!7 models
+Drag select of 26 residues, 1 pseudobonds
+Drag select of 10 residues
+> select up
+atoms, 574 bonds, 1 pseudobond, 71 residues, 2 models selected
+> select up
+atoms, 5654 bonds, 1 pseudobond, 684 residues, 2 models selected
+> select up
+atoms, 5978 bonds, 1 pseudobond, 724 residues, 2 models selected
+> select up
+atoms, 10350 bonds, 1 pseudobond, 1244 residues, 2 models selected
+> select up
+atoms, 10370 bonds, 1 pseudobond, 1246 residues, 2 models selected
+> select up
+atoms, 21666 bonds, 11 pseudobonds, 2516 residues, 2 models selected
+> select down
+atoms, 10370 bonds, 1 pseudobond, 1246 residues, 2 models selected
+> select down
+atoms, 10350 bonds, 1 pseudobond, 1244 residues, 2 models selected
+> color (#!7 & sel) #82821fff
+> color (#!7 & sel) #81811fff
+> color (#!7 & sel) #7d7d1eff
+> color (#!7 & sel) #7a7a1dff
+> color (#!7 & sel) #78781dff
+> color (#!7 & sel) #75751cff
+> color (#!7 & sel) #74741cff
+> color (#!7 & sel) #73731cff
+> color (#!7 & sel) #71711bff
+> color (#!7 & sel) #70701bff
+> color (#!7 & sel) #6d6d1aff
+> color (#!7 & sel) #6c6c1aff
+> color (#!7 & sel) #6b6b1aff
+> color zone #8 near #7 distance 2.5
+> show #!8 models
+> hide #!7 models
+> lighting simple
+> lighting soft
+> lighting shadows true intensity 0.5
+> lighting shadows false
+> graphics silhouettes false
+> graphics silhouettes true
+> show #!7 models
+> hide #!8 models
+> select clear
+> show #!5 models
+> hide #!5 models
+> show #!3 models
+> hide #!7 models
+> show #!5 models
+> show #!7 models
+> hide #!7 models
+> hide #!5 models
+> hide #!3 models
+> show #!9 models
+Drag select of 6 residues
+[Repeated 1 time(s)]
+> select up
+atoms, 433 bonds, 53 residues, 1 model selected
+> select up
+atoms, 5380 bonds, 651 residues, 1 model selected
+> select up
+atoms, 5573 bonds, 673 residues, 1 model selected
+> select up
+atoms, 10263 bonds, 1232 residues, 1 model selected
+> select up
+atoms, 10354 bonds, 1244 residues, 1 model selected
+> select up
+atoms, 10880 bonds, 1260 residues, 1 model selected
+> select down
+atoms, 10354 bonds, 1244 residues, 1 model selected
+> color sel #c2c22eff
+> color sel #aa0000ff
+> color sel #aa5500ff
+> color sel #ac5600ff
+> color sel #aa5500ff
+> color sel #884400ff
+> color sel #793d00ff
+> color sel #743a00ff
+> color sel #733a00ff
+> color sel #703800ff
+> color sel #6f3800ff
+> color sel #703800ff
+> color sel #743a00ff
+> color sel #753b00ff
+> color sel #763b00ff
+> color sel #7e3f00ff
+> color sel #7d3f00ff
+> color sel #7c3e00ff
+> color sel #7a3d00ff
+> select clear
+Drag select of 7 residues, 1 pseudobonds
+Drag select of 3 residues
+> select up
+atoms, 344 bonds, 1 pseudobond, 40 residues, 2 models selected
+> select up
+atoms, 5654 bonds, 1 pseudobond, 684 residues, 2 models selected
+> select up
+atoms, 5900 bonds, 1 pseudobond, 714 residues, 2 models selected
+> select up
+atoms, 10354 bonds, 1 pseudobond, 1244 residues, 2 models selected
+> select up
+atoms, 10880 bonds, 1 pseudobond, 1260 residues, 2 models selected
+> select up
+atoms, 21760 bonds, 8 pseudobonds, 2520 residues, 2 models selected
+> select down
+atoms, 10880 bonds, 1 pseudobond, 1260 residues, 2 models selected
+> select down
+atoms, 10354 bonds, 1 pseudobond, 1244 residues, 2 models selected
+> color (#!9 & sel) #7785ffff
+> color (#!9 & sel) #7a3d00ff
+> color (#!9 & sel) #7785ffff
+> color (#!9 & sel) #7a3d00ff
+> color (#!9 & sel) #7c3e00ff
+> color (#!9 & sel) #8d4700ff
+> color (#!9 & sel) #aa5500ff
+> color (#!9 & sel) #c26100ff
+> color (#!9 & sel) #d66b00ff
+> color (#!9 & sel) #da6d00ff
+> color (#!9 & sel) #dc6e00ff
+> color (#!9 & sel) #eb7600ff
+> color (#!9 & sel) #ea7500ff
+> color (#!9 & sel) #e87400ff
+> color (#!9 & sel) #7a3d00ff
+> color (#!9 & sel) #e87400ff
+> show #!10 models
+> color zone #10 near #9 distance 2.5
+> hide #!10 models
+> show #!10 models
+> hide #!9 models
+> select clear
+> show #!8 models
+> hide #!8 models
+> show #!8 models
+> show #!6 models
+> show #!4 models
+> show #!2 models
+> hide #!4 models
+> hide #!6 models
+> hide #!8 models
+> hide #!10 models
+> show #!4 models
+> show #!6 models
+> show #!8 models
+> show #!10 models
+> save "D:/Yao Lab/Data/Structures of hTRPV3/h & mTRPV3_Essential
+> Oil_Structure/Paper Writing/202403_hV3_Essential Oil_Figures/ChimeraX
+> sessions/2400311_hV3_5MapsStructuresAligned_Coloured01.cxs" includeMaps true
+> hide #!10 models
+> hide #!8 models
+> hide #!6 models
+> hide #!4 models
+> hide #!2 models
+> show #!4 models
+> hide #!4 models
+> show #!6 models
+> hide #!6 models
+> show #!8 models
+> hide #!8 models
+> show #!10 models
+> volume #10 level 0.1371
+> volume #10 level 0.09434
+> volume #10 level 0.131
+> show #!8 models
+> hide #!10 models
+> hide #!8 models
+> show #!6 models
+> hide #!6 models
+> show #!4 models
+> hide #!4 models
+> show #!2 models
+> show #!1 models
+> hide #!1 models
+> hide #!2 models
+> show #!1 models
+Drag select of 9 residues, 1 pseudobonds
+Drag select of 8 residues
+> select up
+atoms, 304 bonds, 1 pseudobond, 40 residues, 2 models selected
+> select up
+atoms, 5506 bonds, 1 pseudobond, 672 residues, 2 models selected
+> select up
+atoms, 5544 bonds, 1 pseudobond, 676 residues, 2 models selected
+> select up
+atoms, 10113 bonds, 1 pseudobond, 1224 residues, 2 models selected
+> select up
+atoms, 10633 bonds, 1 pseudobond, 1238 residues, 2 models selected
+> select up
+atoms, 21265 bonds, 8 pseudobonds, 2476 residues, 2 models selected
+> select down
+atoms, 10633 bonds, 1 pseudobond, 1238 residues, 2 models selected
+> select down
+atoms, 10113 bonds, 1 pseudobond, 1224 residues, 2 models selected
+> select down
+atoms, 5544 bonds, 1 pseudobond, 676 residues, 2 models selected
+> select up
+atoms, 10113 bonds, 1 pseudobond, 1224 residues, 2 models selected
+> color (#!1 & sel) #7d7d7dff
+> color (#!1 & sel) #7c7c7cff
+> color (#!1 & sel) #757575ff
+> color (#!1 & sel) #6c6c6cff
+> color (#!1 & sel) #6b6b6bff
+> color (#!1 & sel) #686868ff
+> color (#!1 & sel) #626262ff
+> color (#!1 & sel) #616161ff
+> color (#!1 & sel) #5e5e5eff
+> color (#!1 & sel) #626262ff
+> color (#!1 & sel) #636363ff
+> color (#!1 & sel) #666666ff
+> color zone #2 near #1 distance 2.5
+> show #!2 models
+> select clear
+> hide #!1 models
+> show #!4 models
+> hide #!2 models
+> show #!1 models
+> hide #!4 models
+> hide #!1 models
+> show #!2 models
+> show #!4 models
+> show #!6 models
+> show #!8 models
+> show #!10 models
+> hide #!2 models
+> hide #!4 models
+> hide #!6 models
+> show #!6 models
+> hide #!8 models
+> show #!8 models
+> hide #!10 models
+> show #!10 models
+> show #!2 models
+> show #!4 models
+> view orient
+> turn x 90
+[Repeated 2 time(s)]
+> turn y 15
+[Repeated 9 time(s)]
+> select clear
+> save "D:/Yao Lab/Data/Structures of hTRPV3/h & mTRPV3_Essential
+> Oil_Structure/Paper Writing/202403_hV3_Essential Oil_Figures/ChimeraX
+> sessions/2400311_hV3_5MapsStructuresAligned_Coloured01.cxs" includeMaps true
+——— End of log from Mon Mar 11 11:02:41 2024 ———
+opened ChimeraX session
+> lighting soft
+> lighting shadows true intensity 0.5
+> lighting shadows false
+> graphics silhouettes false
+> graphics silhouettes true
+> surface dust #2 size 10.7
+> hide #!2 models
+> show #!2 models
+> hide #!2 models
+> show #!1 models
+> ui tool show "Side View"
+> lighting simple
+> select #1/C:695@NE2
+atom, 1 residue, 1 model selected
+> select #1/C:567@CZ
+atom, 1 residue, 1 model selected
+> select #1/C:695
+atoms, 8 bonds, 1 residue, 1 model selected
+> select clear
+> select #1/C:580
+atoms, 8 bonds, 1 residue, 1 model selected
+> select clear
+> show #!2 models
+> hide #!1 models
+> show #!1 models
+> hide #!2 models
+> hide #!1 models
+> show #!3 models
+> show #!4 models
+> hide #!3 models
+> volume #4 level 0.2872
+> view
+> lighting soft
+> lighting shadows true intensity 0.5
+> lighting shadows false
+> graphics silhouettes false
+> graphics silhouettes true
+> volume #4 level 0.3701
+> surface dust #6 size 10.7
+> show #!5 models
+> hide #!5 models
+> show #!5 models
+> hide #!6 models
+> show #!2 models
+> hide #!2 models
+> show #!1 models
+> show #!3 models
+> lighting simple
+> show #!7 models
+> show #!9 models
+> select ::name="POV"
+atoms, 4360 bonds, 124 residues, 5 models selected
+> hide sel atoms
+> select clear
+> hide #!9 models
+> hide #!7 models
+> hide #!5 models
+> hide #!3 models
+> show #!3 models
+> hide #!1 models
+> hide #!3 models
+> show #!4 models
+> hide #!4 models
+> show #!4 models
+> hide #!4 models
+> show #!5 models
+> select clear
+> lighting soft
+> lighting shadows true intensity 0.5
+> lighting shadows false
+> lighting shadows true
+> lighting shadows false
+> lighting simple
+> lighting shadows true
+> lighting shadows false
+> graphics silhouettes false
+> show #!3 models
+> hide #!5 models
+> show #!5 models
+> hide #!5 models
+> show #!5 models
+> hide #!3 models
+> show #!3 models
+> hide #!3 models
+> hide #!5 models
+> show #!1 models
+> hide #!1 models
+> show #!2 models
+> view
+> lighting soft
+> graphics silhouettes true
+> lighting shadows true intensity 0.5
+> lighting shadows false
+> hide #!2 models
+> show #!5 models
+> hide #!5 models
+> show #!7 models
+> show #!10 models
+> show #!9 models
+> hide #!7 models
+> hide #!10 models
+> view
+> select add #9/A:828@C04
+atom, 1 residue, 1 model selected
+> select add #9/A:827@C04
+atoms, 2 residues, 1 model selected
+> select up
+atoms, 56 bonds, 2 residues, 1 model selected
+> color sel #ff00ffff
+> color sel #000000ff
+> color sel #0000ffff
+> color sel #ffaa00ff
+> color sel #aaaaffff
+> select clear
+> hide #!9 models
+> show #!7 models
+> hide #!7 models
+> show #!7 models
+> hide #!7 models
+> show #!9 models
+> hide #!9 models
+> show #!2 models
+> hide #!2 models
+> show #!1 models
+> hide #!1 models
+> show #!3 models
+> show #!5 models
+> hide #!3 models
+> select clear
+[Repeated 1 time(s)]
+> show #!3 models
+> show #!7 models
+> show #!9 models
+> lighting shadows true
+> lighting shadows false
+> lighting shadows true
+> lighting shadows false
+> lighting shadows true
+> lighting shadows false
+> lighting soft
+> lighting shadows true intensity 0.5
+> lighting shadows false
+> select clear
+> hide #!7 models
+> hide #!9 models
+> select #3/B:569
+atoms, 11 bonds, 1 residue, 1 model selected
+> show sel atoms
+> view
+> lighting simple
+> graphics silhouettes false
+> lighting shadows true
+> lighting shadows false
+> lighting soft
+> graphics silhouettes true
+> lighting shadows true intensity 0.5
+> lighting shadows false
+> lighting full
+> lighting shadows false
+> lighting shadows true
+> graphics silhouettes false
+> lighting flat
+> lighting simple
+> lighting soft
+> lighting shadows true intensity 0.5
+> lighting shadows false
+> hide #!5 models
+> select clear
+Drag select of 3 residues
+> select clear
+> ui mousemode right distance
+> distance #3/A:827@C11 #3/A:827@O01
+Distance between Citronellal model #3/A LIG 827 C11 and O01: 7.101Å
+> hide #!3 models
+> show #!9 models
+> distance #9/A:827@C04 #9/A:827@C02
+Distance between Iso model #9/A ISO 827 C04 and C02: 4.525Å
+> hide #!9 models
+> show #!9 models
+> show #!10 models
+> hide #!10 models
+> show #!10 models
+> hide #!9 models
+> volume #10 level 0.1117
+> volume #10 level 0.1338
+> volume #8 level 0.1129
+> volume #6 level 0.319
+> volume #4 level 0.3594
+> select down
+Nothing selected
+> show #!5 models
+> hide #!6 models
+> show #!4 models
+> hide #!4 models
+> show #!6 models
+> hide #!5 models
+> show #!5 models
+> hide #!5 models
+> hide #!6 models
+> show #!2 models
+> show #!4 models
+> hide #!2 models
+> volume #4 level 0.3273
+> show #!3 models
+> hide #!4 models
+Drag select of 20 residues
+> select clear
+Drag select of 9 residues
+> select up
+atoms, 301 bonds, 37 residues, 1 model selected
+> select up
+atoms, 2827 bonds, 342 residues, 1 model selected
+> select up
+atoms, 3096 bonds, 375 residues, 1 model selected
+> select up
+atoms, 8004 bonds, 964 residues, 1 model selected
+> select up
+atoms, 8127 bonds, 979 residues, 1 model selected
+> select up
+atoms, 10354 bonds, 1244 residues, 1 model selected
+> color sel #0000ffff
+> color sel #0000feff
+> color sel #0000faff
+> color sel #0000e5ff
+> color sel #0000dcff
+> color sel #0000d6ff
+> color sel #0000ccff
+> color sel #0000c1ff
+> color sel #0000baff
+> color sel #0000b8ff
+> color sel #0000b0ff
+> color sel #0000afff
+> color sel #0000a1ff
+> color sel #00008fff
+> color sel #000086ff
+> color sel #000084ff
+> color sel #000083ff
+> color sel #000084ff
+> color sel #000087ff
+> color sel #000088ff
+> color sel #000087ff
+> color sel #000083ff
+> color sel #000081ff
+> select clear
+Drag select of 7 residues, 1 pseudobonds
+Drag select of 6 residues, 1 pseudobonds
+> select up
+atoms, 146 bonds, 1 pseudobond, 18 residues, 2 models selected
+> select up
+atoms, 2827 bonds, 1 pseudobond, 342 residues, 2 models selected
+> select up
+atoms, 2950 bonds, 1 pseudobond, 357 residues, 2 models selected
+Drag select of 7 residues
+> select up
+atoms, 3204 bonds, 1 pseudobond, 388 residues, 2 models selected
+> select up
+atoms, 8004 bonds, 1 pseudobond, 964 residues, 2 models selected
+> select up
+atoms, 8127 bonds, 1 pseudobond, 979 residues, 2 models selected
+> select up
+atoms, 10354 bonds, 1 pseudobond, 1244 residues, 2 models selected
+> select up
+atoms, 10824 bonds, 1 pseudobond, 1258 residues, 2 models selected
+> select up
+atoms, 21649 bonds, 8 pseudobonds, 2516 residues, 2 models selected
+> select down
+atoms, 10824 bonds, 1 pseudobond, 1258 residues, 2 models selected
+> color (#!3 & sel) #550000ff
+> color (#!3 & sel) #0000ffff
+> color (#!3 & sel) #0000feff
+> color (#!3 & sel) #0000ffff
+> select clear
+Drag select of 27 residues, 1 pseudobonds
+Drag select of 9 residues
+> select up
+atoms, 914 bonds, 1 pseudobond, 112 residues, 2 models selected
+> select up
+atoms, 5745 bonds, 1 pseudobond, 696 residues, 2 models selected
+> select up
+atoms, 5900 bonds, 1 pseudobond, 714 residues, 2 models selected
+> select up
+atoms, 10354 bonds, 1 pseudobond, 1244 residues, 2 models selected
+> lighting simple
+> graphics silhouettes false
+> select up
+atoms, 10824 bonds, 1 pseudobond, 1258 residues, 2 models selected
+> select up
+atoms, 21649 bonds, 8 pseudobonds, 2516 residues, 2 models selected
+> select down
+atoms, 10824 bonds, 1 pseudobond, 1258 residues, 2 models selected
+> color (#!3 & sel) #0a02ffff
+> color (#!3 & sel) #0202ffff
+> color (#!3 & sel) #0224ffff
+> color (#!3 & sel) #0228ffff
+> color (#!3 & sel) #0230ffff
+> color (#!3 & sel) #0239ffff
+> color (#!3 & sel) #023dffff
+> color (#!3 & sel) #024effff
+> color (#!3 & sel) #0252ffff
+> color (#!3 & sel) #025bffff
+> color (#!3 & sel) #0263ffff
+> color (#!3 & sel) #bababaff
+> color (#!3 & sel) #0263ffff
+> select clear
+> lighting soft
+> lighting shadows true intensity 0.5
+> lighting shadows false
+> graphics silhouettes true
+> lighting simple
+> graphics silhouettes false
+> lighting soft
+> lighting shadows true intensity 0.5
+> lighting shadows false
+> graphics silhouettes true
+> ui tool show "Color Zone"
+> color zone #2 near #3 distance 1.07
+> show #!4 models
+> color zone #4 near #3 distance 2.5
+[Repeated 1 time(s)]
+> hide #!3 models
+> hide #!4 models
+> show #!3 models
+> show #!4 models
+> hide #!4 models
+> hide #!3 models
+> show #!5 models
+> show #!6 models
+> hide #!6 models
+Drag select of 14 residues, 1 pseudobonds
+Drag select of 16 residues
+> select up
+atoms, 356 bonds, 1 pseudobond, 44 residues, 2 models selected
+> select up
+atoms, 3028 bonds, 1 pseudobond, 368 residues, 2 models selected
+> select up
+atoms, 3051 bonds, 1 pseudobond, 371 residues, 2 models selected
+> select up
+atoms, 7795 bonds, 1 pseudobond, 941 residues, 2 models selected
+> select up
+atoms, 7811 bonds, 1 pseudobond, 943 residues, 2 models selected
+> select up
+atoms, 10038 bonds, 1 pseudobond, 1208 residues, 2 models selected
+> select up
+atoms, 10480 bonds, 1 pseudobond, 1222 residues, 2 models selected
+> select up
+atoms, 20960 bonds, 8 pseudobonds, 2444 residues, 2 models selected
+> select down
+atoms, 10480 bonds, 1 pseudobond, 1222 residues, 2 models selected
+> color (#!5 & sel) #ff0000ff
+> color (#!5 & sel) #fe0000ff
+> color (#!5 & sel) #eb0000ff
+> color (#!5 & sel) #ea0000ff
+> color (#!5 & sel) #d50000ff
+> color (#!5 & sel) #aa0000ff
+> color (#!5 & sel) #a10000ff
+> color (#!5 & sel) #9f0000ff
+> color (#!5 & sel) #9a0000ff
+> color (#!5 & sel) #980000ff
+> color (#!5 & sel) #960000ff
+> color (#!5 & sel) #910000ff
+> color (#!5 & sel) #930000ff
+> color (#!5 & sel) #8c0000ff
+> color (#!5 & sel) #8b0000ff
+> color (#!5 & sel) #8a0000ff
+> color (#!5 & sel) #880000ff
+> color (#!5 & sel) #860000ff
+> color (#!5 & sel) #830000ff
+> color (#!5 & sel) #820000ff
+> color (#!5 & sel) #7f0000ff
+> color (#!5 & sel) #7e0000ff
+> color (#!5 & sel) #7c0000ff
+> color (#!5 & sel) #007f8aff
+> color (#!5 & sel) #7c0000ff
+> select clear
+Drag select of 19 residues, 1 pseudobonds
+Drag select of 11 residues, 1 pseudobonds
+> select up
+atoms, 580 bonds, 2 pseudobonds, 71 residues, 2 models selected
+> select up
+atoms, 5552 bonds, 2 pseudobonds, 674 residues, 2 models selected
+> select up
+atoms, 5584 bonds, 2 pseudobonds, 678 residues, 2 models selected
+> select up
+atoms, 10038 bonds, 2 pseudobonds, 1208 residues, 2 models selected
+> select up
+atoms, 10480 bonds, 2 pseudobonds, 1222 residues, 2 models selected
+> select up
+atoms, 20960 bonds, 8 pseudobonds, 2444 residues, 2 models selected
+> select down
+atoms, 10480 bonds, 2 pseudobonds, 1222 residues, 2 models selected
+> color (#!5 & sel) #00c0d1ff
+> color (#!5 & sel) #7c0000ff
+> color (#!5 & sel) #00c0d1ff
+> color (#!5 & sel) #7c0000ff
+> color (#!5 & sel) #810000ff
+> color (#!5 & sel) #880000ff
+> color (#!5 & sel) #fa0000ff
+> color (#!5 & sel) #fc0000ff
+> color (#!5 & sel) #ff0000ff
+> color (#!5 & sel) #ff0901ff
+> color (#!5 & sel) #ff1201ff
+> color (#!5 & sel) #ff1702ff
+> color (#!5 & sel) #ff2003ff
+> color (#!5 & sel) #ff2d03ff
+> color (#!5 & sel) #ff4102ff
+> color (#!5 & sel) #ff4a02ff
+> color (#!5 & sel) #ff5202ff
+> color (#!5 & sel) #ff5602ff
+> color (#!5 & sel) #ff5601ff
+> color (#!5 & sel) #ff5100ff
+> color (#!5 & sel) #ff5602ff
+> color (#!5 & sel) #ff4a02ff
+> color (#!5 & sel) #ff3d02ff
+> color (#!5 & sel) #ff3502ff
+> select clear
+> color zone #6 near #5 distance 2.4
+> show #!4 models
+> show #!6 models
+> hide #!4 models
+> hide #!5 models
+> show #!5 models
+> hide #!6 models
+> show #!3 models
+> hide #!5 models
+> show #!5 models
+> hide #!3 models
+> select #5/C:827@C05
+atom, 1 residue, 1 model selected
+> select up
+atoms, 28 bonds, 1 residue, 1 model selected
+> select up
+atoms, 5240 bonds, 611 residues, 1 model selected
+> select down
+atoms, 28 bonds, 1 residue, 1 model selected
+> color sel #ffaa00ff
+> color sel #ffa200ff
+> color sel #ffb302ff
+> color sel #ffb702ff
+> color sel #ffc002ff
+> color sel #ffc003ff
+> color sel #ffcd03ff
+> color sel #ffd503ff
+> color sel #ffd903ff
+> color sel #ffe203ff
+> color sel #ffea03ff
+> color sel #ffff01ff
+> color sel #ffff02ff
+> select clear
+> select #5/B:590
+atoms, 11 bonds, 1 residue, 1 model selected
+> select clear
+> lighting simple
+> select #5/C:827@C07
+atom, 1 residue, 1 model selected
+> select up
+atoms, 28 bonds, 1 residue, 1 model selected
+> color sel #00ff00ff
+> color zone #6 near #5 distance 2.4
+> show #!6 models
+> hide #!5 models
+> hide #!6 models
+> show #!5 models
+> lighting soft
+> graphics silhouettes false
+> lighting shadows true intensity 0.5
+> lighting shadows false
+> graphics silhouettes true
+> show #!3 models
+> hide #!5 models
+> show #!5 models
+> hide #!3 models
+> color sel #e481ffff
+> color sel #ce6cffff
+> color sel #d36cffff
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+> color sel #ba65ffff
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+> color sel #b963ffff
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+> color sel #ac63ffff
+> color sel #b163ffff
+> color sel #ac63ffff
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+> color sel #b367ffff
+> color sel #b06affff
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+> color sel #b06affff
+> color sel #b06bffff
+> color sel #b06affff
+> color sel #b06bffff
+> color sel #b06affff
+> color sel #b06bffff
+> color sel #b06affff
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+> color sel #b06affff
+> color sel #b56bffff
+> color sel #b56affff
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+> color sel #c669ffff
+> color sel #c765ffff
+> color sel #c766ffff
+> color sel #c663ffff
+> color sel #cc65ffff
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+> color sel #ce5cffff
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+> color sel #cf57ffff
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+> color sel #d454ffff
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+> color sel #e65affff
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+> color sel #8cff4eff
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+> color sel #b5ff54ff
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+> color sel #c4ff57ff
+> color sel #c4ff46ff
+> color sel #c3ff43ff
+> color sel #ccff41ff
+> color sel #dbff3cff
+> color sel #dbff38ff
+> color sel #daff37ff
+> select clear
+> color #5,11 #ddff34ff
+> color #5,11 #95ff23ff
+> color #5,11 #85ff21ff
+> color #5,11 #1eff0eff
+> color #5,11 #2fff00ff
+> undo
+[Repeated 4 time(s)]
+> select up
+atoms, 1 bond, 1 residue, 1 model selected
+> select up
+atoms, 28 bonds, 1 residue, 1 model selected
+> color sel #00ff00ff
+> color sel #00ff7fff
+> color sel #00ff00ff
+> color sel #7785ffff
+> color sel #00ff00ff
+> select clear
+> show #!3 models
+> hide #!5 models
+> select up
+atoms, 1 bond, 1 residue, 1 model selected
+> select up
+atoms, 28 bonds, 1 residue, 1 model selected
+> color sel #ffff00ff
+> color sel #fbff03ff
+> color sel #e6ff06ff
+> color sel #e6ff07ff
+> color sel #eaff07ff
+> color sel #f3ff06ff
+> color sel #ffff03ff
+> color sel #eaff01ff
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+> color sel #00e6ffff
+> color sel #ff0004ff
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+> color sel #4000ffff
+> color sel #1e00ffff
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+> color sel #3cff00ff
+> color sel #d6ff06ff
+> color sel #fbff03ff
+> color sel #ffff03ff
+> color sel #ffff02ff
+> color sel #ffff00ff
+> color sel #fbff00ff
+> color sel #f2ff00ff
+> select clear
+> color zone #4 near #3 distance 2.5
+> show #!4 models
+> hide #!3 models
+> view
+> hide #!4 models
+> show #!7 models
+> show #!8 models
+> hide #!7 models
+> show #!7 models
+> hide #!8 models
+> show #!8 models
+> hide #!8 models
+> show #!8 models
+> hide #!8 models
+Drag select of 9 residues, 1 pseudobonds
+> select clear
+Drag select of 8 residues
+> lighting simple
+Drag select of 30 residues, 1 pseudobonds
+> select up
+atoms, 533 bonds, 1 pseudobond, 67 residues, 2 models selected
+> select up
+atoms, 3101 bonds, 1 pseudobond, 375 residues, 2 models selected
+> select up
+atoms, 3373 bonds, 1 pseudobond, 409 residues, 2 models selected
+> select up
+atoms, 8093 bonds, 1 pseudobond, 976 residues, 2 models selected
+> select up
+atoms, 8164 bonds, 1 pseudobond, 984 residues, 2 models selected
+> select up
+atoms, 10350 bonds, 1 pseudobond, 1244 residues, 2 models selected
+> select up
+atoms, 10370 bonds, 1 pseudobond, 1246 residues, 2 models selected
+> select up
+atoms, 21666 bonds, 11 pseudobonds, 2516 residues, 2 models selected
+> select down
+atoms, 10370 bonds, 1 pseudobond, 1246 residues, 2 models selected
+> select down
+atoms, 10350 bonds, 1 pseudobond, 1244 residues, 2 models selected
+> lighting soft
+> lighting shadows true intensity 0.5
+> lighting shadows false
+> color (#!7 & sel) #6b6b1aff
+> color (#!7 & sel) #6a6a1aff
+> color (#!7 & sel) #73731cff
+> color (#!7 & sel) #7d7d1eff
+> color (#!7 & sel) #868621ff
+> color (#!7 & sel) #888821ff
+> color (#!7 & sel) #8d8d22ff
+> color (#!7 & sel) #949424ff
+> color (#!7 & sel) #959524ff
+> color (#!7 & sel) #949424ff
+> color (#!7 & sel) #939324ff
+> color (#!7 & sel) #909023ff
+> color (#!7 & sel) #8c8c22ff
+> color (#!7 & sel) #8a8a22ff
+> color (#!7 & sel) #848420ff
+> color (#!7 & sel) #7e7e1fff
+> color (#!7 & sel) #78781dff
+> color (#!7 & sel) #76761dff
+> color (#!7 & sel) #74741cff
+> color (#!7 & sel) #4c4c12ff
+> color (#!7 & sel) #5d5d17ff
+> color (#!7 & sel) #5e5e17ff
+> color (#!7 & sel) #626218ff
+> color (#!7 & sel) #636318ff
+> color (#!7 & sel) #666619ff
+> color (#!7 & sel) #686819ff
+> color (#!7 & sel) #6a6a1aff
+> color (#!7 & sel) #6b6b1aff
+> select clear
+Drag select of 12 residues, 1 pseudobonds
+Drag select of 10 residues, 1 pseudobonds
+> select up
+atoms, 287 bonds, 2 pseudobonds, 33 residues, 2 models selected
+> select up
+atoms, 5654 bonds, 2 pseudobonds, 684 residues, 2 models selected
+> select up
+atoms, 5978 bonds, 2 pseudobonds, 724 residues, 2 models selected
+> select up
+atoms, 10350 bonds, 2 pseudobonds, 1244 residues, 2 models selected
+> select up
+atoms, 10370 bonds, 2 pseudobonds, 1246 residues, 2 models selected
+> select up
+atoms, 21666 bonds, 11 pseudobonds, 2516 residues, 2 models selected
+> select down
+atoms, 10370 bonds, 2 pseudobonds, 1246 residues, 2 models selected
+> select down
+atoms, 10350 bonds, 2 pseudobonds, 1244 residues, 2 models selected
+> color (#!7 & sel) #dddd36ff
+> color (#!7 & sel) #dfdf36ff
+> color (#!7 & sel) #e1e137ff
+> color (#!7 & sel) #dede36ff
+> color (#!7 & sel) #dddd36ff
+> color (#!7 & sel) #d8d835ff
+> color (#!7 & sel) #d0d033ff
+> color (#!7 & sel) #caca31ff
+> color (#!7 & sel) #c8c831ff
+> color (#!7 & sel) #c5c530ff
+> color (#!7 & sel) #c3c32fff
+> color (#!7 & sel) #c2c22fff
+> color (#!7 & sel) #c1c12fff
+> color (#!7 & sel) #bebe2eff
+> color (#!7 & sel) #bdbd2eff
+> color (#!7 & sel) #b9b92dff
+> color (#!7 & sel) #b8b82dff
+> select clear
+> show #!8 models
+> color zone #8 near #7 distance 2.5
+> hide #!8 models
+> hide #!7 models
+> show #!9 models
+> show #!3 models
+> hide #!9 models
+> hide #!11 models
+> show #!11 models
+> hide #!3 models
+> show #!5 models
+> hide #!5 models
+> show #!1 models
+> hide #!1 models
+> show #!7 models
+> hide #!7 models
+> show #!9 models
+> show #!7 models
+> hide #!9 models
+> show #!9 models
+> hide #!7 models
+Drag select of 11 residues
+Drag select of 3 residues
+> select up
+atoms, 228 bonds, 28 residues, 1 model selected
+> select up
+atoms, 548 bonds, 66 residues, 1 model selected
+> select up
+atoms, 768 bonds, 94 residues, 1 model selected
+> select up
+atoms, 5836 bonds, 708 residues, 1 model selected
+> select up
+atoms, 5900 bonds, 714 residues, 1 model selected
+> select up
+atoms, 10354 bonds, 1244 residues, 1 model selected
+> show #!10 models
+> hide #!9 models
+> select clear
+> show #!9 models
+> hide #!10 models
+Drag select of 18 residues
+> lighting simple
+Drag select of 16 residues
+> select up
+atoms, 350 bonds, 41 residues, 1 model selected
+> select down
+atoms, 34 residues, 1 model selected
+> select up
+atoms, 350 bonds, 41 residues, 1 model selected
+> select up
+atoms, 5654 bonds, 684 residues, 1 model selected
+> select up
+atoms, 5900 bonds, 714 residues, 1 model selected
+> select up
+atoms, 10354 bonds, 1244 residues, 1 model selected
+> select up
+atoms, 10880 bonds, 1260 residues, 1 model selected
+> select up
+atoms, 21760 bonds, 2520 residues, 1 model selected
+> select down
+atoms, 10880 bonds, 1260 residues, 1 model selected
+> select down
+atoms, 10354 bonds, 1244 residues, 1 model selected
+> color sel #7a3d00ff
+> color sel #7d3f00ff
+> color sel #7c3e00ff
+> color sel #7a3d00ff
+> color sel #783c00ff
+> color sel #763b00ff
+> color sel #753b00ff
+> color sel #743a00ff
+> color sel #733a00ff
+> color sel #713900ff
+> color sel #703800ff
+> color sel #6f3800ff
+> color sel #6d3700ff
+> color sel #6c3600ff
+> lighting soft
+> lighting shadows true intensity 0.5
+> lighting shadows false
+> select clear
+Drag select of 23 residues, 1 pseudobonds
+Drag select of 10 residues
+> select up
+atoms, 780 bonds, 1 pseudobond, 95 residues, 2 models selected
+> select up
+atoms, 5745 bonds, 1 pseudobond, 696 residues, 2 models selected
+> select up
+atoms, 5900 bonds, 1 pseudobond, 714 residues, 2 models selected
+> select up
+atoms, 10354 bonds, 1 pseudobond, 1244 residues, 2 models selected
+> select up
+atoms, 10880 bonds, 1 pseudobond, 1260 residues, 2 models selected
+> select up
+atoms, 21760 bonds, 8 pseudobonds, 2520 residues, 2 models selected
+> select up
+atoms, 21760 bonds, 8 pseudobonds, 2520 residues, 2 models selected
+> select down
+pseudobonds, 1 model selected
+> select down
+atoms, 10880 bonds, 1 pseudobond, 1260 residues, 2 models selected
+> select down
+atoms, 10354 bonds, 1 pseudobond, 1244 residues, 2 models selected
+> select down
+atoms, 5900 bonds, 1 pseudobond, 714 residues, 2 models selected
+> select up
+atoms, 10354 bonds, 1 pseudobond, 1244 residues, 2 models selected
+> color (#!9 & sel) #e87400ff
+> color (#!9 & sel) #ea7500ff
+> color (#!9 & sel) #e27100ff
+> color (#!9 & sel) #e27c00ff
+> color (#!9 & sel) #e27100ff
+> color (#!9 & sel) #e26600ff
+> color (#!9 & sel) #e25e00ff
+> color (#!9 & sel) #e25a00ff
+> color (#!9 & sel) #e25300ff
+> color (#!9 & sel) #e24801ff
+> color (#!9 & sel) #e24c01ff
+> color (#!9 & sel) #e25301ff
+> color (#!9 & sel) #e25b01ff
+> color (#!9 & sel) #e25f01ff
+> color (#!9 & sel) #e25f02ff
+> color (#!9 & sel) #e26702ff
+> color (#!9 & sel) #e26a02ff
+> color (#!9 & sel) #e26b03ff
+> color (#!9 & sel) #e27203ff
+> color (#!9 & sel) #e2a005ff
+> color (#!9 & sel) #e2b206ff
+> color (#!9 & sel) #e2c106ff
+> color (#!9 & sel) #e2bd06ff
+> color (#!9 & sel) #e2ab06ff
+> color (#!9 & sel) #e2a006ff
+> color (#!9 & sel) #e29106ff
+> color (#!9 & sel) #e28e06ff
+> color (#!9 & sel) #e28606ff
+> color (#!9 & sel) #e27406ff
+> color (#!9 & sel) #e57606ff
+> color (#!9 & sel) #df7306ff
+> color (#!9 & sel) #dc7106ff
+> color (#!9 & sel) #ce6a06ff
+> color (#!9 & sel) #cc6906ff
+> color (#!9 & sel) #cb6806ff
+> color (#!9 & sel) #ca6806ff
+> color (#!9 & sel) #c86705ff
+> color (#!9 & sel) #c76605ff
+> color (#!9 & sel) #c66605ff
+> color (#!9 & sel) #ce6a06ff
+> color (#!9 & sel) #d06b06ff
+> select clear
+> color zone #10 near #9 distance 2.5
+> show #!10 models
+> view
+> show #!7 models
+> hide #!9 models
+> hide #!10 models
+> show #!8 models
+> hide #!8 models
+> color #7,11 #aa557fff
+Drag select of 10 residues, 1 pseudobonds
+Drag select of 4 residues, 1 pseudobonds
+> select up
+atoms, 311 bonds, 2 pseudobonds, 36 residues, 2 models selected
+> select up
+atoms, 5654 bonds, 2 pseudobonds, 684 residues, 2 models selected
+> select up
+atoms, 5978 bonds, 2 pseudobonds, 724 residues, 2 models selected
+> select up
+atoms, 10350 bonds, 2 pseudobonds, 1244 residues, 2 models selected
+> select up
+atoms, 10370 bonds, 2 pseudobonds, 1246 residues, 2 models selected
+> select up
+atoms, 21666 bonds, 11 pseudobonds, 2516 residues, 2 models selected
+> select down
+atoms, 10370 bonds, 2 pseudobonds, 1246 residues, 2 models selected
+> color (#!7 & sel) #005500ff
+> color (#!7 & sel) #005600ff
+> color (#!7 & sel) #005300ff
+> color (#!7 & sel) #005000ff
+> color (#!7 & sel) #004f00ff
+> color (#!7 & sel) #004d00ff
+> color (#!7 & sel) #004c00ff
+> select clear
+Drag select of 12 residues
+Drag select of 6 residues
+> select up
+atoms, 316 bonds, 38 residues, 1 model selected
+> select up
+atoms, 5654 bonds, 684 residues, 1 model selected
+> select up
+atoms, 5978 bonds, 724 residues, 1 model selected
+> select up
+atoms, 10350 bonds, 1244 residues, 1 model selected
+> select up
+atoms, 10370 bonds, 1246 residues, 1 model selected
+> select up
+atoms, 21666 bonds, 2516 residues, 1 model selected
+> select down
+atoms, 10370 bonds, 1246 residues, 1 model selected
+> color sel #004f00ff
+> color sel #005d00ff
+> color sel #005f00ff
+> color sel #006f00ff
+> color sel #009400ff
+> color sel #00be00ff
+> color sel #0dbe01ff
+> color sel #14be01ff
+> color sel #1abe01ff
+> color sel #1dbe01ff
+> color sel #23be01ff
+> color sel #2abe01ff
+> color sel #2dbe01ff
+> color sel #34be01ff
+> select clear
+Drag select of 10 residues
+> select clear
+> color zone #8 near #7 distance 2.5
+> show #!8 models
+> hide #!7 models
+> show #!7 models
+> hide #!8 models
+Drag select of 17 residues, 1 pseudobonds
+Drag select of 2 residues
+> select up
+atoms, 364 bonds, 1 pseudobond, 43 residues, 2 models selected
+> select up
+atoms, 5654 bonds, 1 pseudobond, 684 residues, 2 models selected
+> select up
+atoms, 5978 bonds, 1 pseudobond, 724 residues, 2 models selected
+> select up
+atoms, 10350 bonds, 1 pseudobond, 1244 residues, 2 models selected
+> select up
+atoms, 10370 bonds, 1 pseudobond, 1246 residues, 2 models selected
+> select up
+atoms, 21666 bonds, 11 pseudobonds, 2516 residues, 2 models selected
+> select down
+atoms, 10370 bonds, 1 pseudobond, 1246 residues, 2 models selected
+> color (#!7 & sel) #2ebe02ff
+> color (#!7 & sel) #26be04ff
+> color (#!7 & sel) #20be04ff
+> color (#!7 & sel) #1dbe04ff
+> color (#!7 & sel) #10be04ff
+> color (#!7 & sel) #05be02ff
+> color (#!7 & sel) #02be02ff
+> color (#!7 & sel) #04be10ff
+> color (#!7 & sel) #04be11ff
+> color (#!7 & sel) #04be1aff
+> color (#!7 & sel) #04bf1aff
+> color (#!7 & sel) #04bc1aff
+> color (#!7 & sel) #04b919ff
+> color (#!7 & sel) #04b819ff
+> color (#!7 & sel) #04b519ff
+> color (#!7 & sel) #04b319ff
+> color (#!7 & sel) #04b018ff
+> color (#!7 & sel) #04ad18ff
+> color (#!7 & sel) #04ab18ff
+> color (#!7 & sel) #04a817ff
+> color (#!7 & sel) #04a717ff
+> color (#!7 & sel) #04a617ff
+> color (#!7 & sel) #04a517ff
+> select clear
+> color zone #8 near #7 distance 2.5
+> show #!8 models
+> hide #!7 models
+> show #!10 models
+> show #!9 models
+> hide #!8 models
+> lighting simple
+[Repeated 1 time(s)]
+> graphics silhouettes false
+> lighting simple
+> lighting soft
+> lighting shadows true intensity 0.5
+> lighting shadows false
+> graphics silhouettes true
+> open "D:/Yao Lab/Data/Structures of hTRPV3/hTRPV3 300kV EM Data/20230816
+> hTRPV3 Nanodisc Apo/Calculations/hV3_Apo_J65_sharp_aligned.mrc"
+Opened hV3_Apo_J65_sharp_aligned.mrc as #12, grid size 240,240,240, pixel
+.07, shown at level 0.334, step 1, values float32
+> open "D:/Yao Lab/Data/Structures of hTRPV3/hTRPV3 300kV EM Data/20230816
+> hTRPV3 Nanodisc Apo/Final Map for atomic
+> structure/231110_hV3_Apo_Lipids_VBPLipidModified_FinalTetramer.pdb"
+Chain information for 231110_hV3_Apo_Lipids_VBPLipidModified_FinalTetramer.pdb
+#13
+---
+Chain | Description
+A B C D | No description available
+> hide #!9 models
+> hide #!11 models
+> hide #11.1 models
+> hide #!12 models
+> color #13 magenta
+> color #13 #555500ff
+> color #13 #aa00ffff
+Drag select of 10 residues, 1 pseudobonds
+> select clear
+Drag select of 17 residues, 1 pseudobonds
+Drag select of 11 residues
+> select up
+atoms, 521 bonds, 1 pseudobond, 67 residues, 2 models selected
+> select up
+atoms, 5506 bonds, 1 pseudobond, 672 residues, 2 models selected
+> select up
+atoms, 5544 bonds, 1 pseudobond, 676 residues, 2 models selected
+> select up
+atoms, 10113 bonds, 1 pseudobond, 1224 residues, 2 models selected
+> select up
+atoms, 10633 bonds, 1 pseudobond, 1238 residues, 2 models selected
+> select down
+atoms, 10113 bonds, 1 pseudobond, 1224 residues, 2 models selected
+> color (#!13 & sel) #aa00ffff
+> color (#!13 & sel) #a900feff
+> color (#!13 & sel) #9900e5ff
+> color (#!13 & sel) #8100c1ff
+> color (#!13 & sel) #7f00bfff
+> color (#!13 & sel) #7b00b9ff
+> color (#!13 & sel) #7900b5ff
+> color (#!13 & sel) #7800b4ff
+> color (#!13 & sel) #7100aaff
+> color (#!13 & sel) #68009cff
+> color (#!13 & sel) #68019cff
+> color (#!13 & sel) #75029cff
+> color (#!13 & sel) #7b029cff
+> color (#!13 & sel) #7d029cff
+> color (#!13 & sel) #85039cff
+> select clear
+Drag select of 14 residues, 1 pseudobonds
+Drag select of 16 residues
+> select up
+atoms, 626 bonds, 1 pseudobond, 80 residues, 2 models selected
+> select up
+atoms, 5506 bonds, 1 pseudobond, 672 residues, 2 models selected
+> select up
+atoms, 5544 bonds, 1 pseudobond, 676 residues, 2 models selected
+> select up
+atoms, 10113 bonds, 1 pseudobond, 1224 residues, 2 models selected
+> select up
+atoms, 10633 bonds, 1 pseudobond, 1238 residues, 2 models selected
+> lighting simple
+> select down
+atoms, 10113 bonds, 1 pseudobond, 1224 residues, 2 models selected
+> select down
+atoms, 5544 bonds, 1 pseudobond, 676 residues, 2 models selected
+> select up
+atoms, 10113 bonds, 1 pseudobond, 1224 residues, 2 models selected
+> lighting soft
+> lighting shadows true intensity 0.5
+> lighting shadows false
+> color (#!13 & sel) #87039eff
+> color (#!13 & sel) #830399ff
+> color (#!13 & sel) #7f0395ff
+> color (#!13 & sel) #7a038fff
+> color (#!13 & sel) #77038bff
+> color (#!13 & sel) #76038aff
+> color (#!13 & sel) #740388ff
+> color (#!13 & sel) #720386ff
+> select clear
+Drag select of 4 residues
+Drag select of 14 residues
+> lighting simple
+> select up
+atoms, 395 bonds, 48 residues, 1 model selected
+> select up
+atoms, 2982 bonds, 366 residues, 1 model selected
+> select up
+atoms, 3089 bonds, 380 residues, 1 model selected
+> select up
+atoms, 7809 bonds, 948 residues, 1 model selected
+> select up
+atoms, 7828 bonds, 950 residues, 1 model selected
+> select up
+atoms, 10112 bonds, 1224 residues, 1 model selected
+> select up
+atoms, 10632 bonds, 1238 residues, 1 model selected
+> select up
+atoms, 21265 bonds, 2476 residues, 1 model selected
+> select down
+atoms, 10632 bonds, 1238 residues, 1 model selected
+> lighting soft
+> lighting shadows true intensity 0.5
+> lighting shadows false
+> color sel #aa00ffff
+> color sel #b701ffff
+> color sel #c803ffff
+> color sel #cd03ffff
+> color sel #cd05ffff
+> color sel #df3effff
+> color sel #df3dffff
+> color sel #df3cffff
+> color sel #de39ffff
+> color sel #e137ffff
+> color sel #e037feff
+> color sel #df37fdff
+> color sel #cc32e7ff
+> color sel #c731e2ff
+> color sel #c731e1ff
+> color sel #c430deff
+> color sel #c02fdaff
+> color sel #bf2fd8ff
+> color sel #bd2ed6ff
+> color sel #bb2ed4ff
+> color sel #b82dd1ff
+> color sel #b62cceff
+> select clear
+Drag select of 13 residues, 1 pseudobonds
+Drag select of 6 residues
+> select up
+atoms, 339 bonds, 1 pseudobond, 44 residues, 2 models selected
+> select up
+atoms, 5506 bonds, 1 pseudobond, 672 residues, 2 models selected
+> select up
+atoms, 5544 bonds, 1 pseudobond, 676 residues, 2 models selected
+> select up
+atoms, 10112 bonds, 1 pseudobond, 1224 residues, 2 models selected
+> select up
+atoms, 10632 bonds, 1 pseudobond, 1238 residues, 2 models selected
+> select up
+atoms, 21265 bonds, 8 pseudobonds, 2476 residues, 2 models selected
+> select down
+atoms, 10632 bonds, 1 pseudobond, 1238 residues, 2 models selected
+> select down
+atoms, 10112 bonds, 1 pseudobond, 1224 residues, 2 models selected
+> color (#!13 & sel) #b82dd0ff
+> color (#!13 & sel) #bc2ed5ff
+> color (#!13 & sel) #c430deff
+> color (#!13 & sel) #c831e3ff
+> select clear
+> color zone #12 near #13 distance 2.5
+> show #!12 models
+> hide #!13 models
+> volume #12 level 0.4532
+> color zone #2 near #1 distance 1.07
+> show #!1 models
+> hide #!2 models
+> color zone #2 near #1 distance 2
+> color zone #2 near #1 distance 2.5
+[Repeated 1 time(s)]
+> show #!2 models
+> show #!3 models
+> hide #!2 models
+> hide #!1 models
+> show #!4 models
+> hide #!3 models
+> show #!1 models
+> hide #!1 models
+> show #!2 models
+> hide #!2 models
+> hide #!4 models
+> show #!1 models
+> hide #!1 models
+> show #!2 models
+> show #!12 models
+> show #!13 models
+> hide #!2 models
+> show #!3 models
+> hide #!12 models
+> hide #!13 models
+> show #!4 models
+> show #!2 models
+> show #!1 models
+> hide #!3 models
+> hide #!4 models
+> hide #!2 models
+> save "D:/Yao Lab/Data/Structures of hTRPV3/h & mTRPV3_Essential
+> Oil_Structure/Paper Writing/202403_hV3_Essential Oil_Figures/ChimeraX
+> sessions/2400313_hV3_5MapsStructuresAligned_Coloured02.cxs" includeMaps true
+——— End of log from Wed Mar 13 21:36:13 2024 ———
+opened ChimeraX session
+QWindowsWindow::setGeometry: Unable to set geometry 1150x280+2724+1418 (frame:
+x336+2713+1373) on QWidgetWindow/"QDockWidgetClassWindow" on
+"\\\\.\DISPLAY2". Resulting geometry: 1154x295+2722+1405 (frame:
+x351+2711+1360) margins: 11, 45, 11, 11 minimum size: 73x51 maximum size:
+x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
+maxtrack=POINT(x=786453, y=786487), mintrack=POINT(x=132, y=133)))
+> show #!2 models
+> hide #!2 models
+> hide #!1 models
+> show #!5 models
+> show #!6 models
+> hide #!6 models
+Drag select of 11 residues
+Drag select of 15 residues
+> select up
+atoms, 276 bonds, 34 residues, 1 model selected
+> select up
+atoms, 5552 bonds, 674 residues, 1 model selected
+> select up
+atoms, 5584 bonds, 678 residues, 1 model selected
+> select up
+atoms, 10038 bonds, 1208 residues, 1 model selected
+> select up
+atoms, 10480 bonds, 1222 residues, 1 model selected
+> select up
+atoms, 20960 bonds, 2444 residues, 1 model selected
+> select up
+atoms, 128565 bonds, 2 pseudobonds, 14948 residues, 19 models selected
+> select down
+atoms, 20960 bonds, 2444 residues, 1 model selected
+> select down
+atoms, 10480 bonds, 1222 residues, 1 model selected
+> select down
+atoms, 10038 bonds, 1208 residues, 1 model selected
+> select down
+atoms, 5584 bonds, 678 residues, 1 model selected
+> select up
+atoms, 10038 bonds, 1208 residues, 1 model selected
+> select up
+atoms, 10480 bonds, 1222 residues, 1 model selected
+> select down
+atoms, 10038 bonds, 1208 residues, 1 model selected
+> color sel #00c0d1ff
+> color sel #ff0000ff
+> color sel #870000ff
+> color sel #820000ff
+> color sel #840000ff
+> color sel #820000ff
+> color sel #7e0000ff
+> select clear
+Drag select of 5 residues
+Drag select of 6 residues
+> select up
+atoms, 299 bonds, 37 residues, 1 model selected
+> select up
+atoms, 5552 bonds, 674 residues, 1 model selected
+> select up
+atoms, 5584 bonds, 678 residues, 1 model selected
+> select up
+atoms, 10038 bonds, 1208 residues, 1 model selected
+> select up
+atoms, 10480 bonds, 1222 residues, 1 model selected
+> select up
+atoms, 20960 bonds, 2444 residues, 1 model selected
+> select up
+atoms, 128565 bonds, 2 pseudobonds, 14948 residues, 19 models selected
+> select down
+atoms, 20960 bonds, 2444 residues, 1 model selected
+> select down
+atoms, 10480 bonds, 1222 residues, 1 model selected
+> select down
+atoms, 10038 bonds, 1208 residues, 1 model selected
+> select up
+atoms, 10480 bonds, 1222 residues, 1 model selected
+> select up
+atoms, 20960 bonds, 2444 residues, 1 model selected
+> select down
+atoms, 10480 bonds, 1222 residues, 1 model selected
+> color sel #b4a0b4ff
+> color sel #ff0000ff
+> color sel #dc0000ff
+> color sel #da0000ff
+> select clear
+> show #!6 models
+> hide #!5 models
+> show #!5 models
+> hide #!6 models
+> ui tool show "Color Zone"
+> color zone #2 near #5 distance 1.07
+> color zone #6 near #5 distance 2.4
+> show #!6 models
+> hide #!5 models
+> show #!5 models
+> hide #!6 models
+> show #!6 models
+> hide #!6 models
+> hide #!5 models
+> show #!5 models
+Drag select of 7 residues, 1 pseudobonds
+Drag select of 2 residues
+> select up
+atoms, 40 bonds, 5 residues, 1 model selected
+> select up
+atoms, 2776 bonds, 337 residues, 1 model selected
+> select up
+atoms, 2792 bonds, 339 residues, 1 model selected
+> select up
+atoms, 5019 bonds, 604 residues, 1 model selected
+Drag select of 9 residues, 1 pseudobonds
+Drag select of 3 residues, 1 pseudobonds
+> select up
+atoms, 277 bonds, 2 pseudobonds, 34 residues, 2 models selected
+> select up
+atoms, 5552 bonds, 2 pseudobonds, 674 residues, 2 models selected
+> select up
+atoms, 5584 bonds, 2 pseudobonds, 678 residues, 2 models selected
+> select up
+atoms, 10038 bonds, 2 pseudobonds, 1208 residues, 2 models selected
+> select up
+atoms, 10480 bonds, 2 pseudobonds, 1222 residues, 2 models selected
+> select up
+atoms, 20960 bonds, 8 pseudobonds, 2444 residues, 2 models selected
+> select down
+atoms, 10480 bonds, 2 pseudobonds, 1222 residues, 2 models selected
+> color (#!5 & sel) #de0000ff
+> color (#!5 & sel) #e20000ff
+> color (#!5 & sel) #e30000ff
+> color (#!5 & sel) #e50000ff
+> color (#!5 & sel) #e60000ff
+> select clear
+> color zone #6 near #5 distance 2.4
+> show #!6 models
+> hide #!5 models
+> color zone #6 near #5 distance 2.4
+> select clear
+> color #6 #7e0000ff
+> undo
+> select clear
+> hide #!6 models
+> show #!6 models
+> save "D:/Yao Lab/Data/Structures of hTRPV3/h & mTRPV3_Essential
+> Oil_Structure/Paper Writing/202403_hV3_Essential Oil_Figures/ChimeraX
+> sessions/2400314_hV3_5MapsStructuresAligned_Coloured04_modified.cxs"
+> includeMaps true
+> show #!7 models
+> hide #!6 models
+> show #!8 models
+> hide #!7 models
+> show #!7 models
+> hide #!8 models
+Drag select of 2 residues
+Drag select of 1 residues
+> select up
+atoms, 106 bonds, 12 residues, 1 model selected
+> select up
+atoms, 3101 bonds, 375 residues, 1 model selected
+> select up
+atoms, 3373 bonds, 409 residues, 1 model selected
+> select up
+atoms, 8093 bonds, 976 residues, 1 model selected
+> select up
+atoms, 8164 bonds, 984 residues, 1 model selected
+> select up
+atoms, 10350 bonds, 1244 residues, 1 model selected
+> select up
+atoms, 10370 bonds, 1246 residues, 1 model selected
+> select up
+atoms, 21666 bonds, 2516 residues, 1 model selected
+> select down
+atoms, 10370 bonds, 1246 residues, 1 model selected
+> select down
+atoms, 10350 bonds, 1244 residues, 1 model selected
+> select down
+atoms, 8164 bonds, 984 residues, 1 model selected
+> select down
+atoms, 8093 bonds, 976 residues, 1 model selected
+> select down
+atoms, 3373 bonds, 409 residues, 1 model selected
+> select up
+atoms, 8093 bonds, 976 residues, 1 model selected
+> select up
+atoms, 8164 bonds, 984 residues, 1 model selected
+> select up
+atoms, 10350 bonds, 1244 residues, 1 model selected
+> select up
+atoms, 10370 bonds, 1246 residues, 1 model selected
+> select up
+atoms, 21666 bonds, 2516 residues, 1 model selected
+> select down
+atoms, 10370 bonds, 1246 residues, 1 model selected
+> select clear
+> view
+Drag select of 7 residues
+Drag select of 3 residues
+> select up
+atoms, 260 bonds, 34 residues, 1 model selected
+> select up
+atoms, 548 bonds, 66 residues, 1 model selected
+> select up
+atoms, 768 bonds, 94 residues, 1 model selected
+> select up
+atoms, 5836 bonds, 708 residues, 1 model selected
+> select up
+atoms, 5978 bonds, 724 residues, 1 model selected
+> select up
+atoms, 10350 bonds, 1244 residues, 1 model selected
+> select up
+atoms, 10370 bonds, 1246 residues, 1 model selected
+> select up
+atoms, 21666 bonds, 2516 residues, 1 model selected
+> select down
+atoms, 10370 bonds, 1246 residues, 1 model selected
+> select down
+atoms, 10350 bonds, 1244 residues, 1 model selected
+> select up
+atoms, 10370 bonds, 1246 residues, 1 model selected
+> color sel #6b6b1aff
+> color sel #166b03ff
+> color sel #156b02ff
+> color sel #186b01ff
+> color sel #186b00ff
+> color sel #176b00ff
+> color sel #106b00ff
+> color sel #0e6b00ff
+> color sel #0b5000ff
+> color sel #0b5600ff
+> color sel #0b5500ff
+> color sel #0b5400ff
+> color sel #0b5300ff
+> color sel #0b5100ff
+> color sel #0b5000ff
+> color sel #0b4f00ff
+> color sel #0a4c00ff
+> select clear
+Drag select of 8 residues
+Drag select of 16 residues
+> select up
+atoms, 534 bonds, 65 residues, 1 model selected
+> select up
+atoms, 5654 bonds, 684 residues, 1 model selected
+> select up
+atoms, 5978 bonds, 724 residues, 1 model selected
+> select up
+atoms, 10350 bonds, 1244 residues, 1 model selected
+> select up
+atoms, 10370 bonds, 1246 residues, 1 model selected
+> select up
+atoms, 21666 bonds, 2516 residues, 1 model selected
+> select down
+atoms, 10370 bonds, 1246 residues, 1 model selected
+> select down
+atoms, 10350 bonds, 1244 residues, 1 model selected
+> color sel #b8b82dff
+> color sel #0a4c00ff
+> color sel #17b000ff
+> color sel #159e00ff
+> color sel #149900ff
+> color sel #159e00ff
+> color sel #159c00ff
+> color sel #149900ff
+> color sel #149800ff
+> color sel #149600ff
+> color sel #149300ff
+> color sel #139100ff
+> color sel #139000ff
+> select clear
+> color zone #8 near #7 distance 2.5
+> show #!8 models
+> hide #!7 models
+> show #!7 models
+> hide #!8 models
+> show #!8 models
+> hide #!8 models
+> hide #!7 models
+> show #!9 models
+> show #!10 models
+> hide #!10 models
+> select clear
+> hide #!9 models
+> show #!9 models
+> hide #!9 models
+> save "D:/Yao Lab/Data/Structures of hTRPV3/h & mTRPV3_Essential
+> Oil_Structure/Paper Writing/202403_hV3_Essential Oil_Figures/ChimeraX
+> sessions/2400314_hV3_5MapsStructuresAligned_Coloured04_modified.cxs"
+> includeMaps true
+> select clear
+No visible models!
+[Repeated 2 time(s)]
+> show #!9 models
+> show #!10 models
+> hide #!9 models
+> show #!9 models
+> hide #!10 models
+Drag select of 13 residues
+Drag select of 9 residues
+> select up
+atoms, 433 bonds, 53 residues, 1 model selected
+> select up
+atoms, 3101 bonds, 375 residues, 1 model selected
+> select up
+atoms, 3334 bonds, 404 residues, 1 model selected
+> select up
+atoms, 8095 bonds, 976 residues, 1 model selected
+> select up
+atoms, 8127 bonds, 979 residues, 1 model selected
+> select up
+atoms, 10354 bonds, 1244 residues, 1 model selected
+> select down
+atoms, 8127 bonds, 979 residues, 1 model selected
+> select up
+atoms, 10354 bonds, 1244 residues, 1 model selected
+> select up
+atoms, 10880 bonds, 1260 residues, 1 model selected
+> select up
+atoms, 21760 bonds, 2520 residues, 1 model selected
+> select down
+atoms, 10880 bonds, 1260 residues, 1 model selected
+> color sel #7a3d00ff
+> color sel #7a4201ff
+> color sel #7a4401ff
+> color sel #7a4801ff
+> color sel #7a4c01ff
+> color sel #7a4c02ff
+> color sel #7a4e02ff
+> color sel #7a5202ff
+> color sel #7a5203ff
+> color sel #7a5603ff
+> color sel #7a5803ff
+> color sel #7a6105ff
+> color sel #7a5905ff
+> color sel #7a5d05ff
+> color sel #7a6105ff
+> color sel #7a7002ff
+> color sel #7a7003ff
+> color sel #7a7004ff
+> color sel #7a7005ff
+> color sel #7a7006ff
+> color sel #7a6d08ff
+> color sel #7a6d0aff
+> color sel #7a6e12ff
+> color sel #7a6d08ff
+> color sel #7a7a07ff
+> color sel #7a7a09ff
+> color sel #7a7a0aff
+> color sel #7a6708ff
+> color sel #7a6308ff
+> color sel #7a4f0aff
+> color sel #7a2d07ff
+> color sel #7a2f09ff
+> color sel #7a370aff
+> color sel #7a390aff
+> color sel #7a390bff
+> color sel #7a3d0bff
+> color sel #7a3f0bff
+> color sel #7a3e0aff
+> color sel #904a0cff
+> color sel #914a0cff
+> color sel #9e510dff
+> color sel #9d500dff
+> color sel #9a4f0dff
+> color sel #964d0cff
+> color sel #a7550eff
+> color sel #a2530dff
+> color sel #9e510dff
+> color sel #9c500dff
+> color sel #994e0dff
+> color sel #934b0cff
+> color sel #8b470bff
+> color sel #8c470cff
+> color sel #914a0cff
+> color sel #8f490cff
+> select clear
+Drag select of 8 residues, 1 pseudobonds
+Drag select of 4 residues
+> select up
+atoms, 330 bonds, 1 pseudobond, 39 residues, 2 models selected
+> select up
+atoms, 5745 bonds, 1 pseudobond, 696 residues, 2 models selected
+> select up
+atoms, 5900 bonds, 1 pseudobond, 714 residues, 2 models selected
+> select up
+atoms, 10354 bonds, 1 pseudobond, 1244 residues, 2 models selected
+> select up
+atoms, 10880 bonds, 1 pseudobond, 1260 residues, 2 models selected
+> select up
+atoms, 21760 bonds, 8 pseudobonds, 2520 residues, 2 models selected
+> select down
+atoms, 10880 bonds, 1 pseudobond, 1260 residues, 2 models selected
+> color (#!9 & sel) #bf6210ff
+> color (#!9 & sel) #c36410ff
+> color (#!9 & sel) #c56510ff
+> color (#!9 & sel) #ca6711ff
+> color (#!9 & sel) #cf6a11ff
+> color (#!9 & sel) #ce6911ff
+> color (#!9 & sel) #ca6711ff
+> color (#!9 & sel) #c56510ff
+> color (#!9 & sel) #e87400ff
+> color (#!9 & sel) #c56510ff
+> color (#!9 & sel) #cb6811ff
+> color (#!9 & sel) #ce6911ff
+> color (#!9 & sel) #cf6a11ff
+> color (#!9 & sel) #d16b11ff
+> color (#!9 & sel) #d46c11ff
+> color (#!9 & sel) #c56510ff
+> color (#!9 & sel) #d46c11ff
+> select clear
+[Repeated 1 time(s)]
+> color zone #10 near #9 distance 2.5
+> show #!10 models
+> hide #!9 models
+> hide #!10 models
+> show #!11 models
+> hide #!11 models
+> show #!10 models
+> show #!9 models
+> hide #!10 models
+Drag select of 9 residues, 1 pseudobonds
+Drag select of 11 residues
+> select up
+atoms, 351 bonds, 1 pseudobond, 41 residues, 2 models selected
+> select up
+atoms, 5654 bonds, 1 pseudobond, 684 residues, 2 models selected
+> select up
+atoms, 5900 bonds, 1 pseudobond, 714 residues, 2 models selected
+> select up
+atoms, 10354 bonds, 1 pseudobond, 1244 residues, 2 models selected
+> select up
+atoms, 10880 bonds, 1 pseudobond, 1260 residues, 2 models selected
+> select up
+atoms, 21760 bonds, 8 pseudobonds, 2520 residues, 2 models selected
+> select down
+atoms, 10880 bonds, 1 pseudobond, 1260 residues, 2 models selected
+> color (#!9 & sel) #8f490cff
+> color (#!9 & sel) #7a3c0aff
+> color (#!9 & sel) #7c3d0aff
+> color (#!9 & sel) #7d3e0aff
+> color (#!9 & sel) #783b0aff
+> color (#!9 & sel) #763a0aff
+> color (#!9 & sel) #733909ff
+> color (#!9 & sel) #74390aff
+> color (#!9 & sel) #753a0aff
+> color zone #10 near #9 distance 2.5
+> show #!10 models
+> hide #!9 models
+> hide #!10 models
+> show #!10 models
+> hide #!10 models
+> show #!9 models
+> select clear
+> hide #!9 models
+No visible models!
+> color zone #10 near #9 distance 2.5
+> show #!9 models
+> show #!10 models
+> close #12-13
+> select clear
+> hide #!9 models
+> show #!7 models
+> hide #!7 models
+> show #!6 models
+> show #!8 models
+> select ~sel & ##selected
+Nothing selected
+> tile
+models tiled
+> lighting soft
+> lighting shadows true intensity 0.5
+> lighting shadows false
+> graphics silhouettes false
+> graphics silhouettes true
+> undo
+[Repeated 2 time(s)]
+> tile
+models tiled
+> undo
+[Repeated 2 time(s)]
+> lighting soft
+> lighting shadows true intensity 0.5
+> lighting shadows false
+> graphics silhouettes false
+> graphics silhouettes true
+> show #!3 models
+> show #!1 models
+> hide #!1 models
+> hide #!3 models
+> show #!2 models
+> show #!4 models
+> hide #!2 models
+> hide #!4 models
+> hide #!6 models
+> hide #!8 models
+> hide #!10 models
+> show #!3 models
+> show #!1 models
+> hide #!1 models
+> show #!1 models
+> show #!5 models
+> show #!7 models
+> show #!9 models
+> lighting shadows true
+> lighting shadows false
+> lighting shadows true
+> lighting shadows false
+> graphics silhouettes false
+> graphics silhouettes true
+> select ::name="POV"
+atoms, 4360 bonds, 124 residues, 5 models selected
+> show sel atoms
+> color sel orange
+> select clear
+> hide #!9 models
+> show #!9 models
+> hide #!9 models
+> hide #!7 models
+> hide #!5 models
+> hide #!3 models
+> show #!2 models
+> hide #!2 models
+Drag select of 10 residues
+Drag select of 4 residues
+> select up
+atoms, 322 bonds, 41 residues, 1 model selected
+> select up
+atoms, 2982 bonds, 366 residues, 1 model selected
+> select up
+atoms, 3089 bonds, 380 residues, 1 model selected
+> select up
+atoms, 7809 bonds, 948 residues, 1 model selected
+> select up
+atoms, 7828 bonds, 950 residues, 1 model selected
+> select up
+atoms, 10113 bonds, 1224 residues, 1 model selected
+> select up
+atoms, 10633 bonds, 1238 residues, 1 model selected
+> select down
+atoms, 10113 bonds, 1224 residues, 1 model selected
+> color sel #4a584aff
+> select clear
+Drag select of 4 residues, 1 pseudobonds
+Drag select of 7 residues
+> select up
+atoms, 168 bonds, 22 residues, 1 model selected
+> select up
+atoms, 2753 bonds, 336 residues, 1 model selected
+Drag select of 14 residues
+> select up
+atoms, 3059 bonds, 373 residues, 1 model selected
+> select up
+atoms, 7809 bonds, 948 residues, 1 model selected
+> select up
+atoms, 7828 bonds, 950 residues, 1 model selected
+> select up
+atoms, 10112 bonds, 1224 residues, 1 model selected
+> select up
+atoms, 10632 bonds, 1238 residues, 1 model selected
+> select down
+atoms, 10112 bonds, 1224 residues, 1 model selected
+> color sel #859f85ff
+> select clear
+> color zone #2 near #1 distance 2
+> color zone #2 near #1 distance 2.5
+[Repeated 1 time(s)]
+> show #!2 models
+> hide #!1 models
+> show #!1 models
+> hide #!2 models
+> show #!2 models
+> hide #!2 models
+> hide #!1 models
+> show #!3 models
+Drag select of 21 residues
+Drag select of 8 residues
+> select down
+atoms, 29 residues, 1 model selected
+> select up
+atoms, 495 bonds, 62 residues, 1 model selected
+> select up
+atoms, 3101 bonds, 375 residues, 1 model selected
+> select up
+atoms, 3423 bonds, 416 residues, 1 model selected
+> select up
+atoms, 8095 bonds, 976 residues, 1 model selected
+> select up
+atoms, 8127 bonds, 979 residues, 1 model selected
+> select up
+atoms, 10354 bonds, 1244 residues, 1 model selected
+> select up
+atoms, 10824 bonds, 1258 residues, 1 model selected
+> select up
+atoms, 21649 bonds, 2516 residues, 1 model selected
+> select down
+atoms, 10824 bonds, 1258 residues, 1 model selected
+> select down
+atoms, 10354 bonds, 1244 residues, 1 model selected
+> color sel #033576ff
+> select clear
+Drag select of 13 residues, 1 pseudobonds
+Drag select of 38 residues, 1 pseudobonds
+> select up
+atoms, 1013 bonds, 2 pseudobonds, 124 residues, 2 models selected
+> select up
+atoms, 5745 bonds, 2 pseudobonds, 696 residues, 2 models selected
+> select up
+atoms, 5900 bonds, 2 pseudobonds, 714 residues, 2 models selected
+> select up
+atoms, 10354 bonds, 2 pseudobonds, 1244 residues, 2 models selected
+> select up
+atoms, 10824 bonds, 2 pseudobonds, 1258 residues, 2 models selected
+> select up
+atoms, 21649 bonds, 8 pseudobonds, 2516 residues, 2 models selected
+> select down
+atoms, 10824 bonds, 2 pseudobonds, 1258 residues, 2 models selected
+> select down
+atoms, 10354 bonds, 2 pseudobonds, 1244 residues, 2 models selected
+> color (#!3 & sel) #055ed3ff
+> select clear
+[Repeated 1 time(s)]
+> color zone #4 near #3 distance 2.5
+> show #!10 models
+> hide #!3 models
+> show #!9 models
+> hide #!10 models
+> select #9/B:656
+atoms, 11 bonds, 1 residue, 1 model selected
+> select #9/C:557
+atoms, 7 bonds, 1 residue, 1 model selected
+> select #9/B:604
+atoms, 4 bonds, 1 residue, 1 model selected
+> select clear
+> select #9/B:600
+atoms, 2 bonds, 1 residue, 1 model selected
+> select #9/B:625@CZ
+atom, 1 residue, 1 model selected
+> select #9/B:601
+atoms, 11 bonds, 1 residue, 1 model selected
+> select #9/B:601
+atoms, 11 bonds, 1 residue, 1 model selected
+> show sel atoms
+> select #9/B:600
+atoms, 2 bonds, 1 residue, 1 model selected
+> select clear
+> show #!3 models
+> hide #!9 models
+> show #!5 models
+> hide #!3 models
+> hide #!5 models
+> show #!3 models
+Drag select of 13 residues
+Drag select of 3 residues
+> select up
+atoms, 483 bonds, 59 residues, 1 model selected
+> select up
+atoms, 5654 bonds, 684 residues, 1 model selected
+> select up
+atoms, 5900 bonds, 714 residues, 1 model selected
+> select up
+atoms, 10354 bonds, 1244 residues, 1 model selected
+> select up
+atoms, 10824 bonds, 1258 residues, 1 model selected
+> select up
+atoms, 21649 bonds, 2516 residues, 1 model selected
+> select down
+atoms, 10824 bonds, 1258 residues, 1 model selected
+> select down
+atoms, 10354 bonds, 1244 residues, 1 model selected
+> select up
+atoms, 10824 bonds, 1258 residues, 1 model selected
+> select down
+atoms, 10354 bonds, 1244 residues, 1 model selected
+> color zone #4 near #3 distance 2.5
+> select #3/C:138
+atoms, 7 bonds, 1 residue, 1 model selected
+> select clear
+> hide #!3 models
+> show #!1 models
+> hide #!1 models
+> show #!3 models
+> show #!4 models
+> hide #!4 models
+> select clear
+> select ligand
+atoms, 4848 bonds, 2 pseudobonds, 144 residues, 6 models selected
+> show sel & #!3 atoms
+> select clear
+> show #!1 models
+> show #!5 models
+> show #!7 models
+> show #!9 models
+> color #1,3,5,7,9 hot pink
+> undo
+> select clear
+> select ::name="POV"
+atoms, 4360 bonds, 124 residues, 5 models selected
+> color sel hot pink
+> hide #!9 models
+> hide #!7 models
+> hide #!5 models
+> hide #!3 models
+> color zone #2 near #1 distance 2.5
+> show #!2 models
+> hide #!1 models
+> show #!4 models
+> hide #!2 models
+> color zone #4 near #3 distance 2.5
+> hide #!4 models
+> show #!6 models
+> color zone #6 near #5 distance 2.4
+> hide #!6 models
+> show #!7 models
+> hide #!7 models
+> show #!8 models
+> color zone #8 near #7 distance 2.5
+> hide #!8 models
+> show #!10 models
+> color zone #10 near #9 distance 2.5
+> select clear
+> hide #!10 models
+> show #!1 models
+> show #!2 models
+> hide #!2 models
+> hide #!1 models
+> show #!3 models
+> select add #3/D:827@H062
+atom, 1 bond, 1 residue, 1 model selected
+> select add #3/B:827@C11
+atoms, 2 bonds, 2 residues, 1 model selected
+> select up
+atoms, 2 bonds, 4 residues, 1 model selected
+> select up
+atoms, 112 bonds, 4 residues, 1 model selected
+> color sel #e87400ff
+> color sel #ffff00ff
+> color sel #ffaa00ff
+> color sel #ffab02ff
+> color sel #ffb302ff
+> color sel #ffb702ff
+> color sel #ffc002ff
+> color sel #ffc001ff
+> color sel #ffbf00ff
+> color sel #ffb700ff
+> select clear
+> show #!4 models
+> color zone #4 near #3 distance 2.5
+> show #!1 models
+> hide #!1 models
+> show #!2 models
+> hide #!2 models
+> select #3/C:827@H112
+atom, 1 residue, 1 model selected
+> select up
+atoms, 28 bonds, 1 residue, 1 model selected
+> select up
+atoms, 5412 bonds, 629 residues, 1 model selected
+> select down
+atoms, 28 bonds, 1 residue, 1 model selected
+> color sel #ffff00ff
+> color zone #4 near sel distance 2.5
+> color zone #4 near #3 distance 2.5
+> select clear
+> show #!1 models
+> hide #!1 models
+> show #!2 models
+> select clear
+> hide #!2 models
+> hide #!3 models
+> hide #!4 models
+> show #!3 models
+> select clear
+> select add #3/A:827@H052
+atom, 1 bond, 1 residue, 1 model selected
+> select add #3/B:827@H042
+atoms, 1 bond, 2 residues, 1 model selected
+> select up
+atoms, 1 bond, 3 residues, 1 model selected
+> select up
+atoms, 84 bonds, 3 residues, 1 model selected
+> color sel #ffff7fff
+> color sel #ffff00ff
+> color sel #e87400ff
+> color sel #ffff00ff
+> select clear
+[Repeated 1 time(s)]
+> color zone #4 near #3 distance 2.5
+> show #!4 models
+> lighting soft
+> lighting shadows true intensity 0.5
+> lighting shadows false
+> graphics silhouettes false
+> graphics silhouettes true
+> hide #!3 models
+> hide #!4 models
+> show #!5 models
+> show #!6 models
+> hide #!5 models
+> show #!5 models
+> hide #!6 models
+> select add #5/D:828@C09
+atom, 1 residue, 1 model selected
+> select up
+atoms, 28 bonds, 1 residue, 1 model selected
+> select add #5/A:829@C09
+atoms, 28 bonds, 2 residues, 1 model selected
+> select up
+atoms, 56 bonds, 2 residues, 1 model selected
+> select up
+atoms, 57 bonds, 3 residues, 1 model selected
+> select up
+atoms, 84 bonds, 3 residues, 1 model selected
+> color sel #7785ffff
+> select add #5/C:827@C09
+atoms, 84 bonds, 4 residues, 1 model selected
+> select up
+atoms, 112 bonds, 4 residues, 1 model selected
+> color sel #e9967aff
+> color sel #ff6347ff
+> color sel #7785ffff
+> color sel #00ff00ff
+> color sel #00ff7fff
+> color sel #00ff00ff
+> color zone #6 near #5 distance 2.4
+> show #!6 models
+> show #!3 models
+> hide #!3 models
+> hide #!6 models
+> hide #!5 models
+> select clear
+> show #!7 models
+> show #!8 models
+> hide #!8 models
+> select up
+atoms, 1 bond, 1 residue, 1 model selected
+> select up
+atoms, 10 bonds, 1 residue, 1 model selected
+> select add #7/D:827@C11
+atoms, 10 bonds, 2 residues, 1 model selected
+> select up
+atoms, 20 bonds, 2 residues, 1 model selected
+> select add #7/B:827@C11
+atoms, 20 bonds, 3 residues, 1 model selected
+> select up
+atoms, 30 bonds, 3 residues, 1 model selected
+> select add #7/A:827@C11
+atoms, 30 bonds, 4 residues, 1 model selected
+> select up
+atoms, 40 bonds, 4 residues, 1 model selected
+> color sel #55ffffff
+> color sel #ff0000ff
+> color sel #ffaa00ff
+> color sel #ff0000ff
+> color sel #0000ffff
+> color sel #00007fff
+> color sel #55ffffff
+> color sel #aaffffff
+> color sel #55ff00ff
+> color sel #ffaa7fff
+> color sel #ffaa00ff
+> color sel #ffaa7fff
+> color sel #ffaa00ff
+> color sel #ffaaffff
+> color sel #ffaa7fff
+> color sel #ffaa00ff
+> select clear
+> undo
+> color zone #8 near #7 distance 2.5
+> show #!8 models
+> volume #8 level 0.09669
+> color sel #e9967aff
+> color sel #ffaa00ff
+> color sel #e9967aff
+> color sel #ffaa00ff
+> select clear
+> show #!8 models
+> hide #!7 models
+> hide #!8 models
+> show #!9 models
+> show #!10 models
+> select ::name="ISO"
+atoms, 224 bonds, 1 pseudobond, 8 residues, 2 models selected
+> color (#!9 & sel) #00ffffff
+> color (#!9 & sel) #55ffffff
+> color zone #10 near #9 distance 2.5
+> select clear
+> hide #!9 models
+> show #!9 models
+> select ::name="ISO"
+atoms, 224 bonds, 1 pseudobond, 8 residues, 2 models selected
+> color (#!9 & sel) #aaaaffff
+> color (#!9 & sel) #00ffffff
+> color zone #10 near #9 distance 2.5
+> select clear
+> hide #!10 models
+> show #!10 models
+> hide #!10 models
+> hide #!9 models
+> show #!10 models
+> show #!9 models
+> hide #!9 models
+> hide #!10 models
+> show #!8 models
+> show #!7 models
+> hide #!7 models
+> hide #!8 models
+> show #!7 models
+> hide #!7 models
+> show #!6 models
+> show #!5 models
+> hide #!5 models
+> show #!8 models
+> show #!10 models
+> show #!4 models
+> show #!2 models
+> tile
+models tiled
+> view orient
+> show #!4 models
+> show #!6 models
+> show #!8 models
+> show #!10 models
+> close #11
+> lighting soft
+> graphics silhouettes false
+> lighting shadows true intensity 0.5
+> lighting shadows false
+> save "D:/Yao Lab/Data/Structures of hTRPV3/h & mTRPV3_Essential
+> Oil_Structure/Paper Writing/202403_hV3_Essential Oil_Figures/ChimeraX
+> sessions/2400314_hV3_5MapsStructuresAligned_Coloured04_modified.cxs"
+> includeMaps true
+> hide #!10 models
+> hide #!8 models
+> hide #!6 models
+> hide #!4 models
+> show #!4 models
+> hide #!2 models
+> hide #!4 models
+> show #!2 models
+> volume #!2 region all imageMode "full region"
+> volume unzone #!2
+> mousemode rightMode "crop volume"
+> volume #2 style surface
+> show #!1 models
+> hide #!1 models
+> hide #!2 models
+> show #!2 models
+> hide #!2 models
+> show #!1 models
+> show #!2 models
+> hide #!2 models
+> lighting simple
+> graphics silhouettes true
+> lighting shadows true
+> lighting shadows false
+> graphics silhouettes false
+> select up
+atoms, 1 bond, 1 residue, 1 model selected
+> select up
+atoms, 37 bonds, 1 residue, 1 model selected
+> select down
+atoms, 1 bond, 1 residue, 1 model selected
+> select up
+atoms, 37 bonds, 1 residue, 1 model selected
+> select clear
+> select up
+atoms, 1 bond, 1 residue, 1 model selected
+> select up
+atoms, 37 bonds, 1 residue, 1 model selected
+> select clear
+> show #!2 models
+> color zone #2 near #1 distance 2.4
+> color zone #2 near #1 distance 2.2
+> color zone #2 near #1 distance 2.1
+> volume #2 change image level -0.05824,0 level 0.3341,0.8 level 3.922,1
+> volume #2 level 0.3906
+> color zone #2 near #1 distance 2
+> color zone #2 near #1 distance 1.9
+> color zone #2 near #1 distance 2
+> color zone #2 near #1 distance 2.1
+> color zone #2 near #1 distance 2.2
+> hide #!2 models
+> select #1/B:536
+atoms, 5 bonds, 1 residue, 1 model selected
+> select add #1/B:537
+atoms, 11 bonds, 2 residues, 1 model selected
+> show sel atoms
+> show #!2 models
+> hide #!2 models
+> select add #1/B:540
+atoms, 23 bonds, 3 residues, 1 model selected
+> select add #1/B:541
+atoms, 30 bonds, 4 residues, 1 model selected
+> show sel atoms
+> select add #1/B:458
+atoms, 36 bonds, 5 residues, 1 model selected
+> select add #1/B:459
+atoms, 41 bonds, 6 residues, 1 model selected
+> show sel atoms
+> select add #1/B:487
+atoms, 51 bonds, 7 residues, 1 model selected
+> select add #1/B:488
+atoms, 58 bonds, 8 residues, 1 model selected
+> movie record
+> turn y 2 180
+> wait 180
+> movie encode C:\Users\陆徐腾/Desktop\movie1.mp4
+Movie saved to C:\Users\陆徐腾/Desktop\movie1.mp4
+> show sel atoms
+> movie record
+> turn y 2 180
+> wait 180
+> movie encode C:\Users\陆徐腾/Desktop\movie2.mp4
+F:\UCSF ChimeraX 1.7\ChimeraX\bin\ffmpeg.exe -r 25 -i
+C:\Users\C451~1\AppData\Local\Temp\chimovie_Wddm-%05d.ppm -vf
+crop=floor(in_w/2)*2:floor(in_h/2)*2:0:0 -y -vcodec libx264 -f mp4 -pix_fmt
+yuv420p -crf 20 C:\Users\陆徐腾/Desktop\movie2.mp4
+stdout:
+stderr:
+ffmpeg version 3.2.4 Copyright (c) 2000-2017 the FFmpeg developers
+built with gcc 6.3.0 (GCC)
+configuration: --enable-gpl --enable-version3 --enable-d3d11va --enable-dxva2
+--enable-libmfx --enable-nvenc --enable-avisynth --enable-bzlib --enable-
+fontconfig --enable-frei0r --enable-gnutls --enable-iconv --enable-libass
+--enable-libbluray --enable-libbs2b --enable-libcaca --enable-libfreetype
+--enable-libgme --enable-libgsm --enable-libilbc --enable-libmodplug --enable-
+libmp3lame --enable-libopencore-amrnb --enable-libopencore-amrwb --enable-
+libopenh264 --enable-libopenjpeg --enable-libopus --enable-librtmp --enable-
+libsnappy --enable-libsoxr --enable-libspeex --enable-libtheora --enable-
+libtwolame --enable-libvidstab --enable-libvo-amrwbenc --enable-libvorbis
+--enable-libvpx --enable-libwavpack --enable-libwebp --enable-libx264
+--enable-libx265 --enable-libxavs --enable-libxvid --enable-libzimg --enable-
+lzma --enable-zlib
+libavutil 55. 34.101 / 55. 34.101
+libavcodec 57. 64.101 / 57. 64.101
+libavformat 57. 56.101 / 57. 56.101
+libavdevice 57. 1.100 / 57. 1.100
+libavfilter 6. 65.100 / 6. 65.100
+libswscale 4. 2.100 / 4. 2.100
+libswresample 2. 3.100 / 2. 3.100
+libpostproc 54. 1.100 / 54. 1.100
+Input #0, image2, from
+'C:\Users\C451~1\AppData\Local\Temp\chimovie_Wddm-%05d.ppm':
+Duration: 00:00:07.20, start: 0.000000, bitrate: N/A
+Stream #0:0: Video: ppm, rgb24, 1962x1644, 25 tbr, 25 tbn, 25 tbc
+[libx264 @ 00000000026d53e0] using cpu capabilities: MMX2 SSE2Fast SSSE3
+SSE4.2 AVX FMA3 AVX2 LZCNT BMI2
+[libx264 @ 00000000026d53e0] profile High, level 5.0
+[libx264 @ 00000000026d53e0] 264 - core 148 r2762 90a61ec - H.264/MPEG-4 AVC
+codec - Copyleft 2003-2017 - http://www.videolan.org/x264.html - options:
+cabac=1 ref=3 deblock=1:0:0 analyse=0x3:0x113 me=hex subme=7 psy=1
+psy_rd=1.00:0.00 mixed_ref=1 me_range=16 chroma_me=1 trellis=1 8x8dct=1 cqm=0
+deadzone=21,11 fast_pskip=1 chroma_qp_offset=-2 threads=12 lookahead_threads=2
+sliced_threads=0 nr=0 decimate=1 interlaced=0 bluray_compat=0
+constrained_intra=0 bframes=3 b_pyramid=2 b_adapt=1 b_bias=0 direct=1
+weightb=1 open_gop=0 weightp=2 keyint=250 keyint_min=25 scenecut=40
+intra_refresh=0 rc_lookahead=40 rc=crf mbtree=1 crf=20.0 qcomp=0.60 qpmin=0
+qpmax=69 qpstep=4 ip_ratio=1.40 aq=1:1.00
+Output #0, mp4, to 'C:\Users\陆徐腾/Desktop\movie2.mp4':
+Metadata:
+encoder : Lavf57.56.101
+Stream #0:0: Video: h264 (libx264) ([33][0][0][0] / 0x0021), yuv420p,
+x1644, q=-1--1, 25 fps, 12800 tbn, 25 tbc
+Metadata:
+encoder : Lavc57.64.101 libx264
+Side data:
+cpb: bitrate max/min/avg: 0/0/0 buffer size: 0 vbv_delay: -1
+Stream mapping:
+Stream #0:0 -> #0:0 (ppm (native) -> h264 (libx264))
+Press [q] to stop, [?] for help
+frame= 16 fps=0.0 q=0.0 size= 0kB time=00:00:00.00 bitrate=N/A speed= 0x
+frame= 31 fps= 30 q=0.0 size= 0kB time=00:00:00.00 bitrate=N/A speed= 0x
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+kB time=00:00:00.16 bitrate=98222.5kbits/s speed=0.0423x frame= 72 fps= 16
+q=25.0 size= 3842kB time=00:00:00.52 bitrate=60523.9kbits/s speed=0.119x
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+time=00:00:01.56 bitrate=42597.5kbits/s speed=0.258x frame= 105 fps= 16 q=25.0
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+fps= 16 q=25.0 size= 9849kB time=00:00:02.20 bitrate=36674.4kbits/s
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+bitrate=31842.6kbits/s speed=0.275x frame= 180 fps=7.2 q=-1.0 Lsize= 27317kB
+time=00:00:07.08 bitrate=31607.7kbits/s speed=0.283x
+video:27315kB audio:0kB subtitle:0kB other streams:0kB global headers:0kB
+muxing overhead: 0.010329%
+[libx264 @ 00000000026d53e0] frame I:3 Avg QP:22.39 size:262491
+[libx264 @ 00000000026d53e0] frame P:90 Avg QP:25.81 size:170248
+[libx264 @ 00000000026d53e0] frame B:87 Avg QP:28.05 size:136319
+[libx264 @ 00000000026d53e0] consecutive B-frames: 32.8% 5.6% 8.3% 53.3%
+[libx264 @ 00000000026d53e0] mb I I16..4: 16.6% 34.8% 48.6%
+[libx264 @ 00000000026d53e0] mb P I16..4: 7.7% 18.4% 24.0% P16..4: 15.1% 10.4%
+.3% 0.0% 0.0% skip:19.1%
+[libx264 @ 00000000026d53e0] mb B I16..4: 1.1% 2.1% 8.9% B16..8: 23.3% 19.9%
+.9% direct: 2.6% skip:31.2% L0:46.2% L1:42.3% BI:11.4%
+[libx264 @ 00000000026d53e0] 8x8 transform intra:33.2% inter:31.9%
+[libx264 @ 00000000026d53e0] coded y,uvDC,uvAC intra: 55.1% 52.8% 26.7% inter:
+.8% 12.0% 7.0%
+[libx264 @ 00000000026d53e0] i16 v,h,dc,p: 13% 15% 3% 69%
+[libx264 @ 00000000026d53e0] i8 v,h,dc,ddl,ddr,vr,hd,vl,hu: 24% 16% 23% 7% 6%
+% 6% 7% 5%
+[libx264 @ 00000000026d53e0] i4 v,h,dc,ddl,ddr,vr,hd,vl,hu: 22% 17% 17% 8% 8%
+% 8% 7% 5%
+[libx264 @ 00000000026d53e0] i8c dc,h,v,p: 56% 19% 20% 5%
+[libx264 @ 00000000026d53e0] Weighted P-Frames: Y:0.0% UV:0.0%
+[libx264 @ 00000000026d53e0] ref P L0: 62.9% 12.0% 17.0% 8.1%
+[libx264 @ 00000000026d53e0] ref B L0: 88.9% 9.0% 2.1%
+[libx264 @ 00000000026d53e0] ref B L1: 96.9% 3.1%
+[libx264 @ 00000000026d53e0] kb/s:31077.26
+An error occurred during encoding. See Reply Log for details.
+Error during MPEG encoding:
+\-----------------------------
+Exit value: 3221225786
+Error message:
+stdout:
+stderr:
+ffmpeg version 3.2.4 Copyright (c) 2000-2017 the FFmpeg developers
+built with gcc 6.3.0 (GCC)
+configuration: --enable-gpl --enable-version3 --enable-d3d11va --enable-dxva2
+--enable-libmfx --enable-nvenc --enable-avisynth --enable-bzlib --enable-
+fontconfig --enable-frei0r --enable-gnutls --enable-iconv --enable-libass
+--enable-libbluray --enable-libbs2b --enable-libcaca --enable-libfreetype
+--enable-libgme --enable-libgsm --enable-libilbc --enable-libmodplug --enable-
+libmp3lame --enable-libopencore-amrnb --enable-libopencore-amrwb --enable-
+libopenh264 --enable-libopenjpeg --enable-libopus --enable-librtmp --enable-
+libsnappy --enable-libsoxr --enable-libspeex --enable-libtheora --enable-
+libtwolame --enable-libvidstab --enable-libvo-amrwbenc --enable-libvorbis
+--enable-libvpx --enable-libwavpack --enable-libwebp --enable-libx264
+--enable-libx265 --enable-libxavs --enable-libxvid --enable-libzimg --enable-
+lzma --enable-zlib
+libavutil 55. 34.101 / 55. 34.101
+libavcodec 57. 64.101 / 57. 64.101
+libavformat 57. 56.101 / 57. 56.101
+libavdevice 57. 1.100 / 57. 1.100
+libavfilter 6. 65.100 / 6. 65.100
+libswscale 4. 2.100 / 4. 2.100
+libswresample 2. 3.100 / 2. 3.100
+libpostproc 54. 1.100 / 54. 1.100
+Input #0, image2, from
+'C:\Users\C451~1\AppData\Local\Temp\chimovie_Wddm-%05d.ppm':
+Duration: 00:00:07.20, start: 0.000000, bitrate: N/A
+Stream #0:0: Video: ppm, rgb24, 1962x1644, 25 tbr, 25 tbn, 25 tbc
+[libx264 @ 00000000026d53e0] using cpu capabilities: MMX2 SSE2Fast SSSE3
+SSE4.2 AVX FMA3 AVX2 LZCNT BMI2
+[libx264 @ 00000000026d53e0] profile High, level 5.0
+[libx264 @ 00000000026d53e0] 264 - core 148 r2762 90a61ec - H.264/MPEG-4 AVC
+codec - Copyleft 2003-2017 - http://www.videolan.org/x264.html - options:
+cabac=1 ref=3 deblock=1:0:0 analyse=0x3:0x113 me=hex subme=7 psy=1
+psy_rd=1.00:0.00 mixed_ref=1 me_range=16 chroma_me=1 trellis=1 8x8dct=1 cqm=0
+deadzone=21,11 fast_pskip=1 chroma_qp_offset=-2 threads=12 lookahead_threads=2
+sliced_threads=0 nr=0 decimate=1 interlaced=0 bluray_compat=0
+constrained_intra=0 bframes=3 b_pyramid=2 b_adapt=1 b_bias=0 direct=1
+weightb=1 open_gop=0 weightp=2 keyint=250 keyint_min=25 scenecut=40
+intra_refresh=0 rc_lookahead=40 rc=crf mbtree=1 crf=20.0 qcomp=0.60 qpmin=0
+qpmax=69 qpstep=4 ip_ratio=1.40 aq=1:1.00
+Output #0, mp4, to 'C:\Users\陆徐腾/Desktop\movie2.mp4':
+Metadata:
+encoder : Lavf57.56.101
+Stream #0:0: Video: h264 (libx264) ([33][0][0][0] / 0x0021), yuv420p,
+x1644, q=-1--1, 25 fps, 12800 tbn, 25 tbc
+Metadata:
+encoder : Lavc57.64.101 libx264
+Side data:
+cpb: bitrate max/min/avg: 0/0/0 buffer size: 0 vbv_delay: -1
+Stream mapping:
+Stream #0:0 -> #0:0 (ppm (native) -> h264 (libx264))
+Press [q] to stop, [?] for help
+frame= 16 fps=0.0 q=0.0 size= 0kB time=00:00:00.00 bitrate=N/A speed= 0x
+frame= 31 fps= 30 q=0.0 size= 0kB time=00:00:00.00 bitrate=N/A speed= 0x
+frame= 46 fps= 30 q=0.0 size= 0kB time=00:00:00.00 bitrate=N/A speed= 0x
+frame= 47 fps= 18 q=0.0 size= 0kB time=00:00:00.00 bitrate=N/A speed= 0x
+frame= 59 fps= 19 q=25.0 size= 967kB time=00:00:00.00
+bitrate=101579794.9kbits/s speed=2.48e-005x frame= 63 fps= 17 q=25.0 size=
+kB time=00:00:00.16 bitrate=98222.5kbits/s speed=0.0423x frame= 72 fps= 16
+q=25.0 size= 3842kB time=00:00:00.52 bitrate=60523.9kbits/s speed=0.119x
+frame= 78 fps= 16 q=25.0 size= 5113kB time=00:00:00.76 bitrate=55111.0kbits/s
+speed=0.156x frame= 87 fps= 16 q=25.0 size= 6605kB time=00:00:01.12
+bitrate=48307.7kbits/s speed=0.205x frame= 98 fps= 16 q=25.0 size= 8112kB
+time=00:00:01.56 bitrate=42597.5kbits/s speed=0.258x frame= 105 fps= 16 q=25.0
+size= 8920kB time=00:00:01.84 bitrate=39710.8kbits/s speed=0.279x frame= 114
+fps= 16 q=25.0 size= 9849kB time=00:00:02.20 bitrate=36674.4kbits/s
+speed=0.31x frame= 124 fps= 16 q=25.0 size= 10788kB time=00:00:02.60
+bitrate=33989.9kbits/s speed=0.338x frame= 129 fps= 15 q=25.0 size= 11505kB
+time=00:00:02.80 bitrate=33659.2kbits/s speed=0.336x frame= 131 fps= 15 q=25.0
+size= 11794kB time=00:00:02.88 bitrate=33545.6kbits/s speed=0.324x frame= 134
+fps= 14 q=25.0 size= 12263kB time=00:00:03.00 bitrate=33486.5kbits/s
+speed=0.318x frame= 138 fps= 14 q=25.0 size= 12942kB time=00:00:03.16
+bitrate=33550.8kbits/s speed=0.316x frame= 143 fps= 13 q=25.0 size= 13780kB
+time=00:00:03.36 bitrate=33596.9kbits/s speed=0.311x frame= 146 fps= 13 q=25.0
+size= 14191kB time=00:00:03.48 bitrate=33404.0kbits/s speed= 0.3x frame= 149
+fps= 12 q=25.0 size= 14559kB time=00:00:03.60 bitrate=33128.3kbits/s
+speed=0.297x frame= 152 fps= 12 q=25.0 size= 14887kB time=00:00:03.72
+bitrate=32783.8kbits/s speed=0.294x frame= 155 fps= 12 q=25.0 size= 15209kB
+time=00:00:03.84 bitrate=32445.3kbits/s speed=0.292x frame= 158 fps= 12 q=25.0
+size= 15642kB time=00:00:03.96 bitrate=32358.2kbits/s speed=0.289x frame= 160
+fps= 11 q=25.0 size= 15940kB time=00:00:04.04 bitrate=32320.8kbits/s
+speed=0.283x frame= 164 fps= 11 q=25.0 size= 16529kB time=00:00:04.20
+bitrate=32238.7kbits/s speed=0.282x frame= 167 fps= 11 q=25.0 size= 16953kB
+time=00:00:04.32 bitrate=32146.5kbits/s speed=0.28x frame= 170 fps= 11 q=25.0
+size= 17392kB time=00:00:04.44 bitrate=32087.8kbits/s speed=0.277x frame= 173
+fps= 10 q=25.0 size= 17842kB time=00:00:04.56 bitrate=32052.0kbits/s
+speed=0.275x frame= 178 fps= 10 q=25.0 size= 18503kB time=00:00:04.76
+bitrate=31842.6kbits/s speed=0.275x frame= 180 fps=7.2 q=-1.0 Lsize= 27317kB
+time=00:00:07.08 bitrate=31607.7kbits/s speed=0.283x
+video:27315kB audio:0kB subtitle:0kB other streams:0kB global headers:0kB
+muxing overhead: 0.010329%
+[libx264 @ 00000000026d53e0] frame I:3 Avg QP:22.39 size:262491
+[libx264 @ 00000000026d53e0] frame P:90 Avg QP:25.81 size:170248
+[libx264 @ 00000000026d53e0] frame B:87 Avg QP:28.05 size:136319
+[libx264 @ 00000000026d53e0] consecutive B-frames: 32.8% 5.6% 8.3% 53.3%
+[libx264 @ 00000000026d53e0] mb I I16..4: 16.6% 34.8% 48.6%
+[libx264 @ 00000000026d53e0] mb P I16..4: 7.7% 18.4% 24.0% P16..4: 15.1% 10.4%
+.3% 0.0% 0.0% skip:19.1%
+[libx264 @ 00000000026d53e0] mb B I16..4: 1.1% 2.1% 8.9% B16..8: 23.3% 19.9%
+.9% direct: 2.6% skip:31.2% L0:46.2% L1:42.3% BI:11.4%
+[libx264 @ 00000000026d53e0] 8x8 transform intra:33.2% inter:31.9%
+[libx264 @ 00000000026d53e0] coded y,uvDC,uvAC intra: 55.1% 52.8% 26.7% inter:
+.8% 12.0% 7.0%
+[libx264 @ 00000000026d53e0] i16 v,h,dc,p: 13% 15% 3% 69%
+[libx264 @ 00000000026d53e0] i8 v,h,dc,ddl,ddr,vr,hd,vl,hu: 24% 16% 23% 7% 6%
+% 6% 7% 5%
+[libx264 @ 00000000026d53e0] i4 v,h,dc,ddl,ddr,vr,hd,vl,hu: 22% 17% 17% 8% 8%
+% 8% 7% 5%
+[libx264 @ 00000000026d53e0] i8c dc,h,v,p: 56% 19% 20% 5%
+[libx264 @ 00000000026d53e0] Weighted P-Frames: Y:0.0% UV:0.0%
+[libx264 @ 00000000026d53e0] ref P L0: 62.9% 12.0% 17.0% 8.1%
+[libx264 @ 00000000026d53e0] ref B L0: 88.9% 9.0% 2.1%
+[libx264 @ 00000000026d53e0] ref B L1: 96.9% 3.1%
+[libx264 @ 00000000026d53e0] kb/s:31077.26
+\-----------------------------
+> show #!2 models
+> hide #!2 models
+> select #1/B:491
+atoms, 7 bonds, 1 residue, 1 model selected
+> select #1/B:490
+atoms, 6 bonds, 1 residue, 1 model selected
+> select add #1/B:491
+atoms, 13 bonds, 2 residues, 1 model selected
+> show #!2 models
+> volume #2 level 0.3461
+> ui mousemode right "pick blobs"
+> measure blob #!2.1 triangleNumber 560909 color #0000ccff outline true
+Surface Apo map #2.1 blob:
+volume = 1.3279e+05
+area = 1.835e+05
+size = 109.85 142.14 142.14
+> volume #2 level 0.3906
+> color zone #2 near #1 distance 2.2
+> hide #!2 models
+> select #1/D:273
+atoms, 7 bonds, 1 residue, 1 model selected
+> show sel atoms
+> show #!2 models
+> hide #!2 models
+> select add #1/D:262
+atoms, 10 bonds, 2 residues, 1 model selected
+> select add #1/D:261
+atoms, 21 bonds, 3 residues, 1 model selected
+> show sel atoms
+> show #!2 models
+> hide #!2 models
+> select add #1
+atoms, 21265 bonds, 8 pseudobonds, 2476 residues, 2 models selected
+> select clear
+> select add #1
+atoms, 21265 bonds, 8 pseudobonds, 2476 residues, 2 models selected
+> select subtract #1
+Nothing selected
+> preset "overall look" "publication 1 (silhouettes)"
+Using preset: Overall Look / Publication 1 (Silhouettes)
+Preset expands to these ChimeraX commands:
+    set bg white
+    graphics silhouettes t
+    lighting depthCue f
+> preset "overall look" "publication 2 (depth-cued)"
+Using preset: Overall Look / Publication 2 (Depth-Cued)
+Preset expands to these ChimeraX commands:
+    set bg white
+    graphics silhouettes f
+    lighting depthCue t
+> lighting soft
+> graphics silhouettes true
+> lighting shadows true intensity 0.5
+> lighting shadows false
+> show #!2 models
+> lighting shadows true
+> lighting shadows false
+> lighting shadows true
+> lighting shadows false
+> lighting soft
+> lighting shadows true intensity 0.5
+> lighting shadows false
+> graphics silhouettes false
+> graphics silhouettes true
+> select up
+atoms, 1 bond, 1 residue, 1 model selected
+> select up
+atoms, 37 bonds, 1 residue, 1 model selected
+> color zone #2 near #1 distance 2.3
+> color zone #2 near #1 distance 2.4
+> color zone #2 near #1 distance 2.3
+[Repeated 1 time(s)]
+> volume splitbyzone #2
+Opened Apo map 0 as #11.1, grid size 240,240,240, pixel 1.07, shown at level
+.391, step 1, values float32
+Opened Apo map 1 as #11.2, grid size 240,240,240, pixel 1.07, shown at level
+.391, step 1, values float32
+Opened Apo map 2 as #11.3, grid size 240,240,240, pixel 1.07, shown at level
+.391, step 1, values float32
+Opened Apo map 3 as #11.4, grid size 240,240,240, pixel 1.07, shown at level
+.391, step 1, values float32
+> lighting simple
+> graphics silhouettes false
+> volume #11.2 level 0.8283
+> volume #11.2 level 0.5022
+> volume #11.3 level 0.502
+> view sel
+> volume #11.3 level 0.305
+> volume #11.3 level 0.3469
+> volume #11.3 level 0.3175
+> volume #11.3 level 0.3134
+> volume #11.2 level 0.313
+> volume #11.4 level 0.313
+> view
+> volume #11.3 level 0.3595
+> volume #11.3 level 0.3553
+> volume #11.2 level 0.355
+> volume #11.4 level 0.355
+> ui tool show "Hide Dust"
+> surface dust #11.1 size 1.47
+> surface dust #11.1 size 1.57
+> surface dust #11.1 size 1.87
+> surface dust #11.1 size 2.67
+> surface dust #11.1 size 3.07
+> surface dust #11.1 size 3.77
+> surface dust #11.1 size 4.77
+> surface dust #11.1 size 5.47
+> surface dust #11.1 size 5.87
+> surface dust #11.1 size 5.97
+[Repeated 2 time(s)]
+> surface dust #11.1 size 6.07
+> surface dust #11.1 size 6.17
+> surface dust #11.2 size 6.42
+> surface dust #11.3 size 6.42
+> surface dust #11.3 size 6.32
+> surface dust #11.3 size 6.22
+> surface dust #11.3 size 5.72
+> surface dust #11.3 size 5.42
+> surface dust #11.3 size 5.02
+> surface dust #11.3 size 4.72
+> surface dust #11.3 size 4.62
+> surface dust #11.3 size 4.52
+> surface dust #11.3 size 4.42
+> surface dust #11.3 size 4.32
+> surface dust #11.3 size 4.22
+> surface dust #11.3 size 4.12
+> surface dust #11.3 size 4.02
+> surface dust #11.3 size 3.92
+> surface dust #11.3 size 3.82
+> surface dust #11.3 size 3.72
+> surface dust #11.3 size 3.62
+> surface dust #11.3 size 3.52
+> surface dust #11.3 size 3.42
+> surface dust #11.3 size 3.32
+> surface dust #11.3 size 3.22
+> surface dust #11.3 size 3.12
+> surface dust #11.3 size 3.02
+> surface dust #11.3 size 2.92
+> surface dust #11.3 size 3.02
+> surface dust #11.3 size 3.12
+> surface dust #11.3 size 3.22
+> surface dust #11.3 size 3.32
+> surface dust #11.3 size 3.42
+> surface dust #11.3 size 3.32
+> surface dust #11.4 size 6.42
+> select clear
+> show #!2 models
+> hide #!2 models
+> hide #!1 models
+> rename #11.2 "Apo /AC"
+> rename #11.3 "Apo /BD"
+> rename #11.4 "Apo /BD"
+> rename #11.3 "Apo Lipids"
+> rename #11.3 "Apo POPC"
+> show #!3 models
+> show #!4 models
+> hide #!11 models
+> color zone #4 near #3 distance 2.5
+> color zone #4 near #3 distance 2.6
+> color zone #4 near #3 distance 3.1
+> color zone #4 near #3 distance 3.2
+> color zone #4 near #3 distance 3.5
+> color zone #4 near #3 distance 4
+> color zone #4 near #3 distance 4.1
+> color zone #4 near #3 distance 4.2
+> color zone #4 near #3 distance 4
+> color zone #4 near #3 distance 3.9
+> color zone #4 near #3 distance 3.5
+> color zone #4 near #3 distance 3.4
+> color zone #4 near #3 distance 3.3
+> color zone #4 near #3 distance 3.1
+> color zone #4 near #3 distance 2
+> color zone #4 near #3 distance 2.6
+[Repeated 1 time(s)]
+> hide #!4 models
+> select #3/B:537
+atoms, 6 bonds, 1 residue, 1 model selected
+> select add #3/B:540
+atoms, 18 bonds, 2 residues, 1 model selected
+> show sel atoms
+> show #!4 models
+> hide #!4 models
+> select add #3/B:490
+atoms, 24 bonds, 3 residues, 1 model selected
+> show sel atoms
+> select add #3/B:487
+atoms, 34 bonds, 4 residues, 1 model selected
+> select add #3/B:484
+atoms, 41 bonds, 5 residues, 1 model selected
+> show sel atoms
+> show #!4 models
+> select clear
+> color zone #4 near #3 distance 2.6
+> volume splitbyzone #4
+Opened Citronellal map 0 as #12.1, grid size 240,240,240, pixel 1.07, shown at
+level 0.327, step 1, values float32
+Opened Citronellal map 1 as #12.2, grid size 240,240,240, pixel 1.07, shown at
+level 0.327, step 1, values float32
+Opened Citronellal map 2 as #12.3, grid size 240,240,240, pixel 1.07, shown at
+level 0.327, step 1, values float32
+Opened Citronellal map 3 as #12.4, grid size 240,240,240, pixel 1.07, shown at
+level 0.327, step 1, values float32
+Opened Citronellal map 4 as #12.5, grid size 240,240,240, pixel 1.07, shown at
+level 0.327, step 1, values float32
+> volume #12.3 level 0.2266
+> volume #12.4 level 0.247
+> volume #12.4 level 0.2684
+> volume #12.3 level 0.268
+> volume #12.2 level 0.268
+> volume #12.5 level 0.268
+> rename #12.4 "Citronellal Molecules"
+> rename #12.3 "Citronellal POPCs"
+> rename #12.3 "Citronellal POPC"
+> rename #12.2 "Citronellal /AC"
+> rename #12.5 "Citronellal /BD"
+> surface dust #12.2 size 6.42
+> surface dust #12.5 size 6.42
+> surface dust #12.3 size 2.72
+> surface dust #12.3 size 2.62
+> surface dust #12.3 size 2.52
+> surface dust #12.3 size 2.42
+> surface dust #12.3 size 2.32
+> surface dust #12.3 size 2.22
+> surface dust #12.3 size 2.02
+> surface dust #12.3 size 1.82
+> surface dust #12.3 size 1.72
+> surface dust #12.3 size 1.62
+[Repeated 1 time(s)]
+> surface dust #12.3 size 1.52
+> surface dust #12.3 size 1.42
+> surface dust #12.3 size 1.22
+> surface dust #12.3 size 1.07
+[Repeated 2 time(s)]
+> surface dust #12.3 size 1.17
+> surface dust #12.3 size 1.27
+> surface dust #12.3 size 1.37
+> surface dust #12.3 size 1.47
+> surface dust #12.3 size 1.57
+> surface dust #12.3 size 1.67
+> surface dust #12.3 size 1.77
+> surface dust #12.3 size 1.87
+> surface dust #12.3 size 1.97
+> surface dust #12.3 size 2.07
+> surface dust #12.3 size 2.17
+> surface dust #12.3 size 2.37
+> surface dust #12.3 size 2.47
+> surface dust #12.3 size 2.57
+> surface dust #12.3 size 2.67
+> surface dust #12.3 size 2.77
+> surface dust #12.3 size 2.87
+> surface dust #12.3 size 2.97
+> hide #!12 models
+> show #!12 models
+> show #!11 models
+> hide #!11 models
+> hide #!12 models
+> hide #!3 models
+> show #!3 models
+> hide #!3 models
+> show #!5 models
+> show #!6 models
+> color zone #6 near #5 distance 2.3
+> color zone #6 near #5 distance 2
+> color zone #6 near #5 distance 2.1
+> color zone #6 near #5 distance 2.2
+> color zone #6 near #5 distance 2.3
+> color zone #6 near #5 distance 2.2
+> color zone #6 near #5 distance 2.3
+> color zone #6 near #5 distance 2.4
+> color zone #6 near #5 distance 2
+> color zone #6 near #5 distance 2.5
+> color zone #6 near #5 distance 2
+> color zone #6 near #5 distance 2.4
+> color zone #6 near #5 distance 2.45
+[Repeated 1 time(s)]
+> volume splitbyzone #6
+Opened Lin map 0 as #13.1, grid size 240,240,240, pixel 1.07, shown at level
+.319, step 1, values float32
+Opened Lin map 1 as #13.2, grid size 240,240,240, pixel 1.07, shown at level
+.319, step 1, values float32
+Opened Lin map 2 as #13.3, grid size 240,240,240, pixel 1.07, shown at level
+.319, step 1, values float32
+Opened Lin map 3 as #13.4, grid size 240,240,240, pixel 1.07, shown at level
+.319, step 1, values float32
+Opened Lin map 4 as #13.5, grid size 240,240,240, pixel 1.07, shown at level
+.319, step 1, values float32
+> hide #!13.1 models
+> volume #13.4 level 0.257
+> volume #13.4 level 0.2898
+> volume #13.3 level 0.29
+> volume #13.5 level 0.29
+> volume #13.2 level 0.29
+> surface dust #13.2 size 6.42
+> surface dust #13.3 size 6.42
+> surface dust #13.3 size 6.32
+> surface dust #13.3 size 6.22
+> surface dust #13.3 size 5.42
+> surface dust #13.3 size 4.92
+> surface dust #13.3 size 4.52
+> surface dust #13.3 size 4.02
+> surface dust #13.3 size 3.42
+> surface dust #13.3 size 2.92
+> surface dust #13.3 size 1.42
+> surface dust #13.3 size 1.07
+> surface dust #13.3 size 1.17
+> surface dust #13.3 size 1.27
+> surface dust #13.3 size 1.57
+> surface dust #13.3 size 1.97
+> surface dust #13.3 size 2.77
+> surface dust #13.3 size 3.57
+> surface dust #13.3 size 4.37
+> surface dust #13.3 size 5.07
+> surface dust #13.3 size 5.77
+> surface dust #13.3 size 6.77
+> surface dust #13.3 size 7.07
+> surface dust #13.3 size 7.37
+> surface dust #13.3 size 7.67
+> surface dust #13.3 size 7.87
+> surface dust #13.3 size 7.97
+> surface dust #13.3 size 8.07
+> surface dust #13.3 size 8.17
+> surface dust #13.3 size 8.27
+> surface dust #13.3 size 8.37
+> surface dust #13.3 size 8.27
+> surface dust #13.3 size 8.17
+> surface dust #13.3 size 7.47
+> surface dust #13.3 size 6.97
+> surface dust #13.3 size 6.47
+> surface dust #13.3 size 6.27
+> surface dust #13.3 size 6.17
+> surface dust #13.3 size 6.07
+> surface dust #13.3 size 5.77
+> surface dust #13.3 size 5.17
+> surface dust #13.3 size 4.67
+> surface dust #13.3 size 4.37
+> surface dust #13.3 size 3.97
+> surface dust #13.3 size 3.47
+> surface dust #13.3 size 2.87
+> surface dust #13.3 size 2.67
+> surface dust #13.3 size 3.07
+> surface dust #13.3 size 3.17
+> surface dust #13.3 size 3.27
+> surface dust #13.3 size 3.37
+> surface dust #13.3 size 12.76
+[Repeated 1 time(s)]
+> surface dust #13.4 size 3.02
+> surface dust #13.4 size 2.82
+> surface dust #13.4 size 2.62
+> surface dust #13.5 size 6.72
+> surface dust #13.5 size 6.62
+> surface dust #13.5 size 6.52
+> surface dust #13.5 size 6.42
+> surface dust #13.5 size 6.32
+> surface dust #13.5 size 6.12
+> surface dust #13.5 size 6.02
+> surface dust #13.5 size 5.92
+> surface dust #13.5 size 5.82
+> surface dust #13.5 size 5.62
+> surface dust #13.5 size 5.22
+> surface dust #13.5 size 5.02
+> surface dust #13.5 size 4.92
+> surface dust #13.5 size 4.52
+> surface dust #13.5 size 4.22
+> surface dust #13.5 size 3.92
+> surface dust #13.5 size 3.82
+> surface dust #13.5 size 3.72
+> surface dust #13.5 size 3.62
+> surface dust #13.5 size 3.42
+> surface dust #13.5 size 3.12
+> surface dust #13.5 size 2.82
+> surface dust #13.5 size 2.52
+> surface dust #13.5 size 2.12
+> surface dust #13.5 size 1.92
+> surface dust #13.5 size 1.62
+> surface dust #13.5 size 1.52
+> surface dust #13.5 size 1.42
+> surface dust #13.5 size 1.22
+> surface dust #13.5 size 1.12
+> surface dust #13.5 size 1.22
+> surface dust #13.5 size 1.32
+> surface dust #13.5 size 1.42
+> surface dust #13.5 size 1.52
+> select clear
+> rename #13.2 "Lin /AC"
+> rename #13.3 "Lin /BD"
+> rename #13.4 "Lin Molecules"
+> rename #13.5 "Lin POPC"
+> select clear
+> hide #!13 models
+> hide #!5 models
+> show #!7 models
+> show #!8 models
+> color zone #8 near #7 distance 2.5
+> color zone #8 near #7 distance 2.4
+[Repeated 1 time(s)]
+> color zone #8 near #7 distance 2.3
+> color zone #8 near #7 distance 1.1
+> color zone #8 near #7 distance 2
+> color zone #8 near #7 distance 2.2
+> volume #8 level 0.09045
+> color zone #8 near #7 distance 2
+> color zone #8 near #7 distance 2.3
+> color zone #8 near #7 distance 2.35
+[Repeated 1 time(s)]
+> volume splitbyzone #8
+Opened Citral map 0 as #14.1, grid size 384,384,384, pixel 0.84, shown at
+level 0.0905, step 1, values float32
+Opened Citral map 1 as #14.2, grid size 384,384,384, pixel 0.84, shown at
+level 0.0905, step 1, values float32
+Opened Citral map 2 as #14.3, grid size 384,384,384, pixel 0.84, shown at
+level 0.0905, step 1, values float32
+Opened Citral map 3 as #14.4, grid size 384,384,384, pixel 0.84, shown at
+level 0.0905, step 1, values float32
+Opened Citral map 4 as #14.5, grid size 384,384,384, pixel 0.84, shown at
+level 0.0905, step 1, values float32
+> hide #!14.1 models
+> volume #14.3 level 0.07763
+> volume #14.4 level 0.0776
+> volume #14.5 level 0.0776
+> volume #14.2 level 0.0776
+> surface dust #14.2 size 5.04
+> surface dust #14.3 size 5.04
+> surface dust #14.4 size 0.84
+> surface dust #14.4 size 0.85
+> surface dust #14.4 size 0.86
+> surface dust #14.4 size 0.87
+> surface dust #14.4 size 0.88
+> surface dust #14.4 size 0.89
+> surface dust #14.4 size 0.9
+[Repeated 1 time(s)]
+> surface dust #14.4 size 0.91
+> surface dust #14.4 size 0.92
+> surface dust #14.4 size 0.93
+[Repeated 1 time(s)]
+> surface dust #14.4 size 0.94
+> surface dust #14.4 size 0.95
+[Repeated 1 time(s)]
+> surface dust #14.4 size 0.96
+> surface dust #14.4 size 0.97
+> surface dust #14.4 size 0.99
+> surface dust #14.4 size 1
+> surface dust #14.4 size 1.1
+> surface dust #14.4 size 1.4
+> surface dust #14.4 size 1.8
+> surface dust #14.4 size 1.9
+> surface dust #14.4 size 2
+> surface dust #14.4 size 2.1
+> surface dust #14.4 size 2.5
+> surface dust #14.4 size 2.7
+> surface dust #14.4 size 2.9
+> surface dust #14.4 size 3.2
+> surface dust #14.4 size 3.4
+> surface dust #14.4 size 3.5
+> surface dust #14.4 size 3.6
+> surface dust #14.4 size 3.5
+> surface dust #14.4 size 3.4
+> surface dust #14.4 size 3.3
+> surface dust #14.4 size 3.2
+> surface dust #14.4 size 3.1
+> surface dust #14.4 size 3
+> surface dust #14.4 size 2.9
+> surface dust #14.4 size 2.8
+> surface dust #14.4 size 2.7
+> surface dust #14.4 size 2.6
+> surface dust #14.4 size 2.5
+> surface dust #14.5 size 5.04
+[Repeated 1 time(s)]
+> hide #!14 models
+> show #!14 models
+> rename #14.2 "Citral /AC"
+> rename #14.3 "Citral Molecules"
+> rename #14.4 "Citral POPC"
+> rename #14.5 "Citral /BD"
+> select clear
+> hide #!14 models
+> hide #!7 models
+> show #!7 models
+> hide #!7 models
+> show #!8 models
+> show #!9 models
+> hide #!8 models
+> show #!10 models
+> volume #10 level 0.1149
+> color zone #10 near #9 distance 2.6
+[Repeated 1 time(s)]
+> color zone #10 near #9 distance 2.5
+> color zone #10 near #9 distance 2.4
+[Repeated 1 time(s)]
+> volume splitbyzone #10
+Opened Iso map 0 as #15.1, grid size 384,384,384, pixel 0.84, shown at level
+.115, step 1, values float32
+Opened Iso map 1 as #15.2, grid size 384,384,384, pixel 0.84, shown at level
+.115, step 1, values float32
+Opened Iso map 2 as #15.3, grid size 384,384,384, pixel 0.84, shown at level
+.115, step 1, values float32
+Opened Iso map 3 as #15.4, grid size 384,384,384, pixel 0.84, shown at level
+.115, step 1, values float32
+Opened Iso map 4 as #15.5, grid size 384,384,384, pixel 0.84, shown at level
+.115, step 1, values float32
+> hide #!15.1 models
+> volume #15.4 level 0.09728
+> volume #15.4 level 0.1019
+> volume #15.4 level 0.09532
+> volume #15.5 level 0.0953
+> volume #15.3 level 0.0953
+> volume #15.2 level 0.0953
+> surface dust #15.2 size 5.04
+> surface dust #15.2 size 36.1
+[Repeated 1 time(s)]
+> surface dust #15.3 size 2.33
+> surface dust #15.3 size 2.32
+> surface dust #15.3 size 2.31
+> surface dust #15.3 size 2.3
+> surface dust #15.3 size 2.31
+> surface dust #15.3 size 2.32
+> surface dust #15.3 size 2.33
+> surface dust #15.3 size 2.34
+> surface dust #15.3 size 2.35
+> surface dust #15.3 size 3.36
+[Repeated 1 time(s)]
+> surface dust #15.4 size 1
+> surface dust #15.4 size 0.99
+> surface dust #15.4 size 1
+> surface dust #15.4 size 1.01
+> surface dust #15.4 size 1.02
+> surface dust #15.4 size 1.03
+> surface dust #15.4 size 1.04
+> surface dust #15.4 size 1.05
+> surface dust #15.4 size 1.06
+> surface dust #15.4 size 1.07
+> surface dust #15.4 size 1.08
+> surface dust #15.4 size 1.96
+[Repeated 1 time(s)]
+> surface dust #15.5 size 33.9
+> surface dust #15.5 size 14.49
+[Repeated 1 time(s)]
+> select clear
+> hide #!15 models
+> show #!15 models
+> hide #!15 models
+> show #!15 models
+> hide #!9 models
+> rename #15.2 "Iso /AC"
+> rename #15.3 "Iso POPC"
+> rename #15.4 "Iso Molecules"
+> rename #15.5 "Iso /BD"
+> hide #!15 models
+> show #!15 models
+> hide #!15 models
+> hide #!15.2 models
+> show #!15.2 models
+> hide #!15 models
+> show #!15 models
+> show #!14 models
+> show #!13 models
+> show #!12 models
+> show #!11 models
+> lighting soft
+> graphics silhouettes true
+> lighting shadows true intensity 0.5
+> lighting shadows false
+> view orient
+> save "D:/Yao Lab/Data/Structures of hTRPV3/h & mTRPV3_Essential
+> Oil_Structure/Paper Writing/202403_hV3_Essential Oil_Figures/ChimeraX
+> sessions/2400314_hV3_5MapsStructuresAligned_Coloured04_MapsSplit_NoDust.cxs"
+> includeMaps true
+——— End of log from Thu Mar 14 15:56:08 2024 ———
+opened ChimeraX session
+> turn x 90
+[Repeated 2 time(s)]
+> turn y 15
+[Repeated 9 time(s)]
+> hide #!15 models
+> hide #!14 models
+> hide #!13 models
+> hide #!12 models
+QWindowsWindow::setGeometry: Unable to set geometry 1150x298+2794+1366 (frame:
+x354+2783+1321) on QWidgetWindow/"QDockWidgetClassWindow" on
+"\\\\.\DISPLAY2". Resulting geometry: 1154x313+2792+1353 (frame:
+x369+2781+1308) margins: 11, 45, 11, 11 minimum size: 73x51 maximum size:
+x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
+maxtrack=POINT(x=786453, y=786487), mintrack=POINT(x=132, y=133)))
+> volume #11.2 level 0.298
+> volume #11.3 level 0.298
+> volume #11.4 level 0.298
+> hide #!11 models
+> show #!11 models
+> hide #!11 models
+> show #!12 models
+> volume #12.2 level 0.194
+> volume #12.3 level 0.194
+> volume #12.4 level 0.194
+> volume #12.5 level 0.194
+> hide #!12 models
+> show #!13 models
+> volume #13.2 level 0.169
+> volume #13.3 level 0.169
+> volume #13.4 level 0.169
+> volume #13.5 level 0.169
+> hide #!13 models
+> show #!14 models
+> volume #14.2 level 0.0642
+> volume #14.3 level 0.0642
+> volume #14.4 level 0.0642
+> volume #14.5 level 0.0642
+> show #!15 models
+> hide #!14 models
+> volume #15.2 level 0.0941
+> volume #15.3 level 0.0941
+> volume #15.4 level 0.0941
+> volume #15.5 level 0.0941
+> show #!14 models
+> show #!13 models
+> show #!12 models
+> show #!11 models
+> show #!10 models
+> hide #!10 models
+> hide #!15 models
+> hide #!14 models
+> hide #!13 models
+> hide #!12 models
+> ui tool show "Side View"
+> show #!12 models
+> hide #!11 models
+> show #!11 models
+> hide #!12 models
+> show #!12 models
+> hide #!11 models
+> show #!11 models
+> show #!13 models
+> hide #!12 models
+> hide #!11 models
+> show #!12 models
+> show #!11 models
+> hide #!12 models
+> hide #!13 models
+> show #!12 models
+> show #!13 models
+> show #!14 models
+> show #!15 models
+> save "D:/Yao Lab/Data/Structures of hTRPV3/h & mTRPV3_Essential
+> Oil_Structure/Paper Writing/202403_hV3_Essential Oil_Figures/ChimeraX
+> sessions/240314_hV3_5StrucuturesMaps_MonomerVBPLipidLigands_TetramerMaps_FinalFigures.cxs"
+> includeMaps true
+——— End of log from Thu Mar 14 18:57:06 2024 ———
+opened ChimeraX session
+> hide #!15 models
+> hide #!14 models
+> hide #!13 models
+> hide #!12 models
+> hide #!11 models
+> show #!1 models
+> show #!3 models
+> show #!5 models
+> show #!7 models
+> show #!9 models
+> hide #!1 models
+> show #!1 models
+> hide #!9 models
+> hide #!5 models
+> lighting simple
+> graphics silhouettes false
+> hide #!1,3,7 atoms
+> hide #!3 models
+> show #!3 models
+> hide #!1 models
+> show #!1 models
+> cartoon style width 1.35 thickness 0.3
+> ui mousemode right clip
+> hide #!3 models
+> hide #!7 models
+> show #!7 models
+> show #!3 models
+> hide #!7 models
+> show #!6 models
+> show #!7 models
+> hide #!6 models
+> hide #!1 models
+> show #!1 models
+> hide #!1 models
+> show #!1 models
+> hide #!1 models
+> show #!1 models
+Drag select of 6 residues
+> select clear
+> hide #!7 models
+> hide #!3 models
+> select #1/A:638
+atoms, 3 bonds, 1 residue, 1 model selected
+> select add #1/D:638
+atoms, 6 bonds, 2 residues, 1 model selected
+> select add #1/B:638
+atoms, 9 bonds, 3 residues, 1 model selected
+> select add #1/C:638
+atoms, 12 bonds, 4 residues, 1 model selected
+> show sel atoms
+> hide sel cartoons
+> color sel byhetero
+> select clear
+> show #!3 models
+> hide #!1 models
+> select add #3/A:638
+atoms, 3 bonds, 1 residue, 1 model selected
+> select add #3/B:638
+atoms, 6 bonds, 2 residues, 1 model selected
+> select add #3/D:639
+atoms, 13 bonds, 3 residues, 1 model selected
+> select subtract #3/D:639
+atoms, 6 bonds, 2 residues, 1 model selected
+> select add #3/D:638
+atoms, 9 bonds, 3 residues, 1 model selected
+> select add #3/C:638
+atoms, 12 bonds, 4 residues, 1 model selected
+> hide sel cartoons
+> show sel atoms
+> color sel byhetero
+> select clear
+> show #!1 models
+> show #!7 models
+> hide #!1 models
+> hide #!3 models
+> select #7/B:638
+atoms, 3 bonds, 1 residue, 1 model selected
+> select add #7/A:638
+atoms, 6 bonds, 2 residues, 1 model selected
+> select add #7/D:638
+atoms, 9 bonds, 3 residues, 1 model selected
+> select add #7/C:638
+atoms, 12 bonds, 4 residues, 1 model selected
+> hide sel cartoons
+> show sel atoms
+> color sel byhetero
+> select clear
+> show #!1 models
+> show #!3 models
+> hide #!3 models
+> hide #!1 models
+> select #7/C:639
+atoms, 7 bonds, 1 residue, 1 model selected
+> select #7/C:639
+atoms, 7 bonds, 1 residue, 1 model selected
+> select clear
+Drag select of 3 atoms, 1 bonds
+> select up
+atoms, 2 bonds, 4 residues, 1 model selected
+> select up
+atoms, 12 bonds, 4 residues, 1 model selected
+> view sel
+> select clear
+> select #7/D:639
+atoms, 7 bonds, 1 residue, 1 model selected
+> select clear
+> select #7/D:638@C
+atom, 1 residue, 1 model selected
+> select add #7/B:638@C
+atoms, 2 residues, 1 model selected
+> select add #7/A:638@C
+atoms, 3 residues, 1 model selected
+> select add #7/C:639
+atoms, 7 bonds, 4 residues, 1 model selected
+> select subtract #7/C:639
+atoms, 3 residues, 1 model selected
+> select add #7/C:639
+atoms, 7 bonds, 4 residues, 1 model selected
+> select subtract #7/C:639
+atoms, 3 residues, 1 model selected
+> select add #7/C:638@C
+atoms, 4 residues, 1 model selected
+> style sel sphere
+Changed 4 atom styles
+> select clear
+> show #!3 models
+> hide #!7 models
+> select #3/A:638@C
+atom, 1 residue, 1 model selected
+> select add #3/B:638@CA
+atoms, 2 residues, 1 model selected
+> select subtract #3/A:638@C
+atom, 1 residue, 1 model selected
+> select add #3/A:638@CA
+atoms, 2 residues, 1 model selected
+> select add #3/D:638@CA
+atoms, 3 residues, 1 model selected
+> select add #3/C:638@CA
+atoms, 4 residues, 1 model selected
+> style sel sphere
+Changed 4 atom styles
+> hide #!3 models
+> show #!7 models
+> select add #7/C:638@C
+atoms, 5 residues, 2 models selected
+> select add #7/D:638@C
+atoms, 6 residues, 2 models selected
+> select add #7/B:638@C
+atoms, 7 residues, 2 models selected
+> select add #7/A:638@C
+atoms, 8 residues, 2 models selected
+> style sel & #!7 stick
+Changed 4 atom styles
+> select clear
+> select #7/A:638@CA
+atom, 1 residue, 1 model selected
+> select add #7/C:638@CA
+atoms, 2 residues, 1 model selected
+> select add #7/D:638@CA
+atoms, 3 residues, 1 model selected
+> select add #7/B:638@CA
+atoms, 4 residues, 1 model selected
+> style sel sphere
+Changed 4 atom styles
+> select clear
+> show #!3 models
+> show #!1 models
+> hide #!3 models
+> hide #!7 models
+> select add #1/A:638@CA
+atom, 1 residue, 1 model selected
+> select add #1/B:638@CA
+atoms, 2 residues, 1 model selected
+> select add #1/C:638@CA
+atoms, 3 residues, 1 model selected
+> select add #1/D:638@CA
+atoms, 4 residues, 1 model selected
+> style sel sphere
+Changed 4 atom styles
+> show #!3 models
+> show #!7 models
+> hide #!7 models
+> show #!6 models
+> hide #!6 models
+> show #!7 models
+> hide #!7 models
+> select clear
+> hide #!3 models
+> show #!3 models
+> hide #!3 models
+> show #!3 models
+> show #!7 models
+> hide #!3 models
+> hide #!7 models
+> show #!7 models
+> show #!3 models
+> select #1/D:641
+atoms, 7 bonds, 1 residue, 1 model selected
+> select add #3/D:641
+atoms, 14 bonds, 2 residues, 2 models selected
+> select add #7/D:641
+atoms, 21 bonds, 3 residues, 3 models selected
+> show sel atoms
+> hide sel atoms
+> hide sel cartoons
+> show sel atoms
+> color sel byhetero
+> select clear
+[Repeated 1 time(s)]
+> select up
+atoms, 3 bonds, 3 residues, 3 models selected
+> select up
+atoms, 21 bonds, 3 residues, 3 models selected
+> select down
+atoms, 3 bonds, 3 residues, 3 models selected
+> select clear
+> select #7/D:641@CA
+atom, 1 residue, 1 model selected
+> select add #3/D:641@CA
+atoms, 2 residues, 2 models selected
+> select add #1/D:641@CA
+atoms, 3 residues, 3 models selected
+> style sel sphere
+Changed 3 atom styles
+> select clear
+> hide #!1,3,7 atoms
+> select clear
+> view orient
+> turn y 15
+> turn z 15
+[Repeated 2 time(s)]
+> ui tool show "Side View"
+> turn z 1.5
+[Repeated 6 time(s)]
+> show #!1,3,7 cartoons
+> select clear
+> lighting soft
+> lighting shadows true intensity 0.5
+> lighting shadows false
+> graphics silhouettes true
+> ui mousemode right clip
+> lighting simple
+> turn z 1.5
+[Repeated 1 time(s)]
+> select #1/C:641
+atoms, 7 bonds, 1 residue, 1 model selected
+> lighting simple
+> select add #1/A:640
+atoms, 10 bonds, 2 residues, 1 model selected
+> select up
+atoms, 232 bonds, 30 residues, 1 model selected
+> select up
+atoms, 4607 bonds, 552 residues, 1 model selected
+> select up
+atoms, 4729 bonds, 564 residues, 1 model selected
+> select up
+atoms, 9655 bonds, 1164 residues, 1 model selected
+> select up
+atoms, 9665 bonds, 1166 residues, 1 model selected
+> select up
+atoms, 10113 bonds, 1224 residues, 1 model selected
+> select up
+atoms, 10633 bonds, 1238 residues, 1 model selected
+> select up
+atoms, 21265 bonds, 2476 residues, 1 model selected
+> select down
+atoms, 10633 bonds, 1238 residues, 1 model selected
+> color sel #565656ff
+> select clear
+> select add #1/D:640
+atoms, 3 bonds, 1 residue, 1 model selected
+> select add #1/B:640
+atoms, 6 bonds, 2 residues, 1 model selected
+> select up
+atoms, 232 bonds, 30 residues, 1 model selected
+> select up
+atoms, 4606 bonds, 552 residues, 1 model selected
+> select up
+atoms, 4728 bonds, 564 residues, 1 model selected
+> select up
+atoms, 9654 bonds, 1164 residues, 1 model selected
+> select up
+atoms, 9664 bonds, 1166 residues, 1 model selected
+> select up
+atoms, 10112 bonds, 1224 residues, 1 model selected
+> select up
+atoms, 10632 bonds, 1238 residues, 1 model selected
+> select up
+atoms, 21265 bonds, 2476 residues, 1 model selected
+> select down
+atoms, 10632 bonds, 1238 residues, 1 model selected
+> color sel #adadadff
+> select clear
+> graphics silhouettes false
+Drag select of 4109 residues, 12 pseudobonds
+> select up
+atoms, 35488 bonds, 12 pseudobonds, 4336 residues, 6 models selected
+> hide sel cartoons
+Drag select of 5 residues
+Drag select of 4 residues
+[Repeated 1 time(s)]
+> select up
+atoms, 35652 bonds, 12 pseudobonds, 4352 residues, 6 models selected
+Drag select of 5 residues
+> select up
+atoms, 35712 bonds, 12 pseudobonds, 4358 residues, 6 models selected
+> hide sel cartoons
+> cartoon style (#!1,3,7 & sel) modeHelix tube sides 20
+> cartoon style thickness 0.8
+> view orient
+> lighting soft
+> lighting shadows true intensity 0.5
+> lighting shadows false
+> graphics silhouettes true
+> lighting simple
+> graphics silhouettes false
+> hide #1.1 models
+> show #1.1 models
+> lighting simple
+> lighting soft
+> lighting shadows true intensity 0.5
+> lighting shadows false
+> graphics silhouettes true
+> lighting simple
+> graphics silhouettes false
+> select #7/D:577
+atoms, 6 bonds, 1 residue, 1 model selected
+> select clear
+> view
+> hide #!3 models
+> show #!3 models
+> hide #!1 models
+> hide #!7 models
+> show #!7 models
+> hide #!7 models
+> show #!7 models
+> hide #!7 models
+> show #!7 models
+> show #!1 models
+> hide #!3 models
+> show #!3 models
+> ui tool show "Side View"
+> view orient
+> hide #!3 models
+> show #!3 models
+> hide #!7 models
+> show #!7 models
+Drag select of 2 residues
+> select up
+atoms, 50 bonds, 6 residues, 2 models selected
+> hide sel cartoons
+Drag select of 2 residues
+> select up
+atoms, 100 bonds, 12 residues, 2 models selected
+> hide sel cartoons
+Drag select of 2 residues
+> select up
+atoms, 150 bonds, 18 residues, 2 models selected
+> hide sel cartoons
+Drag select of 2 residues
+> select up
+atoms, 200 bonds, 24 residues, 2 models selected
+> hide sel cartoons
+Drag select of 2 residues
+> select up
+atoms, 22681 bonds, 2740 residues, 2 models selected
+> select down
+atoms, 200 bonds, 26 residues, 2 models selected
+> hide sel cartoons
+Drag select of 1 residues
+> select clear
+> select add #7/D:482
+atoms, 7 bonds, 1 residue, 1 model selected
+> select add #3/D:481
+atoms, 22 bonds, 2 residues, 2 models selected
+> select add #1/D:481
+atoms, 37 bonds, 3 residues, 3 models selected
+> select up
+atoms, 272 bonds, 28 residues, 3 models selected
+> select clear
+Drag select of 6 residues
+> select up
+atoms, 272 bonds, 28 residues, 3 models selected
+> hide sel cartoons
+Drag select of 6 residues
+Drag select of 5 residues
+> select up
+atoms, 544 bonds, 56 residues, 3 models selected
+> hide sel cartoons
+Drag select of 5 residues
+Drag select of 4 residues
+> select up
+atoms, 816 bonds, 84 residues, 3 models selected
+> hide sel cartoons
+Drag select of 4 residues
+Drag select of 5 residues
+> select up
+atoms, 1088 bonds, 112 residues, 3 models selected
+> hide sel cartoons
+> select clear
+Drag select of 3336 residues
+> name frozen ApoCitronellalCitralTubeTMD sel
+> select clear
+> save "D:/Yao Lab/Data/Structures of hTRPV3/h & mTRPV3_Essential
+> Oil_Structure/Paper Writing/202403_hV3_Essential Oil_Figures/ChimeraX
+> sessions/240328_hV3_ApoCironellalCitral_TMDTubesCartoon.cxs" includeMaps
+> true
+> view orient
+[Repeated 1 time(s)]
+> lighting soft
+> lighting shadows true intensity 0.5
+> lighting shadows false
+> graphics silhouettes true
+> hide #!7 models
+> show #!7 models
+> hide #!3 models
+> hide #!1 models
+> show #!1 models
+> hide #!1 models
+> select #7/D:489
+atoms, 11 bonds, 1 residue, 1 model selected
+> show #!3 models
+> show #!1 models
+> hide #!1 models
+> hide #!3 models
+> select clear
+> show #!4 models
+> hide #!4 models
+> show #!3 models
+> show #!1 models
+> view orient
+> turn z 1.5
+[Repeated 38 time(s)]
+> turn z -1.5
+> turn z 1.5
+[Repeated 3 time(s)]
+> save "D:/Yao Lab/Data/Structures of hTRPV3/h & mTRPV3_Essential
+> Oil_Structure/Paper Writing/202403_hV3_Essential Oil_Figures/ChimeraX
+> sessions/240328_hV3_ApoCironellalCitral_TMDTubesCartoon.cxs" includeMaps
+> true
+> color #1 #adadadff
+> color #3 #055ed3ff
+> color #7 #139000ff
+> select clear
+> save "D:/Yao Lab/Data/Structures of hTRPV3/h & mTRPV3_Essential
+> Oil_Structure/Paper Writing/202403_hV3_Essential Oil_Figures/ChimeraX
+> sessions/240328_hV3_ApoCironellalCitral_TMDTubesCartoon.cxs" includeMaps
+> true
+——— End of log from Thu Mar 28 19:59:48 2024 ———
+opened ChimeraX session
+> lighting simple
+> graphics silhouettes false
+> cartoon style #1,3,7 modeHelix tube sides 20
+> cartoon style #1,3,7 xsection oval modeHelix default
+Drag select of 8 residues
+Drag select of 14 residues
+> select up
+atoms, 811 bonds, 101 residues, 3 models selected
+> select up
+atoms, 13638 bonds, 1624 residues, 3 models selected
+> select up
+atoms, 13938 bonds, 1654 residues, 3 models selected
+> select up
+atoms, 28898 bonds, 3472 residues, 3 models selected
+> select up
+atoms, 29048 bonds, 3488 residues, 3 models selected
+> select down
+atoms, 28898 bonds, 3472 residues, 3 models selected
+> select down
+atoms, 13938 bonds, 1654 residues, 3 models selected
+> select down
+atoms, 13638 bonds, 1624 residues, 3 models selected
+> select down
+atoms, 811 bonds, 101 residues, 3 models selected
+> select up
+atoms, 13638 bonds, 1624 residues, 3 models selected
+> select down
+atoms, 811 bonds, 101 residues, 3 models selected
+> select clear
+Drag select of 18 residues
+Drag select of 19 residues
+> select up
+atoms, 1205 bonds, 145 residues, 3 models selected
+> select up
+atoms, 16191 bonds, 1933 residues, 3 models selected
+> hide sel cartoons
+> select clear
+> select #7/B:667
+atoms, 6 bonds, 1 residue, 1 model selected
+> select add #1/A:667
+atoms, 12 bonds, 2 residues, 2 models selected
+> show sel atoms
+> hide sel cartoons
+> undo
+[Repeated 1 time(s)]
+> select clear
+> hide #!3 models
+> select add #7/B:663
+atoms, 7 bonds, 1 residue, 1 model selected
+> select add #1/A:663
+atoms, 14 bonds, 2 residues, 2 models selected
+> select add #7/B:680
+atoms, 18 bonds, 3 residues, 2 models selected
+> select add #1/A:679
+atoms, 26 bonds, 4 residues, 2 models selected
+> select add #7/B:652
+atoms, 33 bonds, 5 residues, 2 models selected
+> select add #1/A:652
+atoms, 40 bonds, 6 residues, 2 models selected
+> show sel atoms
+> hide sel cartoons
+> nucleotides sel fill
+> style nucleic & sel stick
+Changed 0 atom styles
+> color sel byhetero
+> ui tool show Angles/Torsions
+> select clear
+> hide #!1 models
+> select #7/B:680@CA
+atom, 1 residue, 1 model selected
+Either three or four atoms must be selected!
+> select clear
+> select add #7/B:680@CA
+atom, 1 residue, 1 model selected
+> select add #7/B:663@CA
+atoms, 2 residues, 1 model selected
+> show #!1 models
+> hide #!7 models
+> select add #1/A:679@CA
+atoms, 3 residues, 2 models selected
+> select add #1/A:663@CA
+atoms, 4 residues, 2 models selected
+Traceback (most recent call last):
+File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
+packages\chimerax\core\triggerset.py", line 149, in invoke
+return self._func(self._name, data)
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
+packages\chimerax\ui\options\options.py", line 58, in proxy_handler
+pself._callback(pself)
+File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
+packages\chimerax\struct_measure\tool.py", line 332, in <lambda>
+lambda opt, settings=settings:
+self._set_angle_decimal_places(settings.decimal_places),
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
+packages\chimerax\struct_measure\tool.py", line 599, in
+_set_angle_decimal_places
+self._update_angles()
+File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
+packages\chimerax\struct_measure\tool.py", line 642, in _update_angles
+self.angle_table.item(i, 4).setText(self._angle_text(atoms))
+^^^^^^^^^^^^^^^^^^^^^^^
+File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
+packages\chimerax\struct_measure\tool.py", line 94, in _angle_text
+return self._angle_fmt % func(*[a.scene_coord for a in atoms])
+~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ValueError: unsupported format character '-' (0x2d) at index 2
+Error processing trigger "setting changed":
+ValueError: unsupported format character '-' (0x2d) at index 2
+File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
+packages\chimerax\struct_measure\tool.py", line 94, in _angle_text
+return self._angle_fmt % func(*[a.scene_coord for a in atoms])
+~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+See log for complete Python traceback.
+> select clear
+> select #1/A:652@CA
+atom, 1 residue, 1 model selected
+> select add #1/A:679@CA
+atoms, 2 residues, 1 model selected
+> show #!3 models
+> hide #!1 models
+> hide #!3 models
+> show #!7 models
+> select add #7/B:680@CA
+atoms, 3 residues, 2 models selected
+> undo
+> select add #7/B:652@CA
+atoms, 4 residues, 2 models selected
+Traceback (most recent call last):
+File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
+packages\chimerax\struct_measure\tool.py", line 246, in _create_angle
+self.angle_table.setItem(num_rows, 4,
+QTableWidgetItem(self._angle_text(sel_atoms)))
+^^^^^^^^^^^^^^^^^^^^^^^^^^^
+File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
+packages\chimerax\struct_measure\tool.py", line 94, in _angle_text
+return self._angle_fmt % func(*[a.scene_coord for a in atoms])
+~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ValueError: unsupported format character '-' (0x2d) at index 2
+ValueError: unsupported format character '-' (0x2d) at index 2
+File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
+packages\chimerax\struct_measure\tool.py", line 94, in _angle_text
+return self._angle_fmt % func(*[a.scene_coord for a in atoms])
+~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+See log for complete Python traceback.
+> select clear
+Traceback (most recent call last):
+File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
+packages\chimerax\struct_measure\tool.py", line 586, in _save_angle_info
+print("%s: %s" % (', '.join(atom_strings), self._angle_text(atoms)), file=f)
+^^^^^^^^^^^^^^^^^^^^^^^
+File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
+packages\chimerax\struct_measure\tool.py", line 94, in _angle_text
+return self._angle_fmt % func(*[a.scene_coord for a in atoms])
+~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ValueError: unsupported format character '-' (0x2d) at index 2
+ValueError: unsupported format character '-' (0x2d) at index 2
+File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
+packages\chimerax\struct_measure\tool.py", line 94, in _angle_text
+return self._angle_fmt % func(*[a.scene_coord for a in atoms])
+~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+See log for complete Python traceback.
+Either three or four atoms must be selected!
+> select add #7/B:680@CA
+atom, 1 residue, 1 model selected
+> select add #7/B:663@CA
+atoms, 2 residues, 1 model selected
+> select add #7/B:652@CA
+atoms, 3 residues, 1 model selected
+> select add #7/B:652@N
+atoms, 3 residues, 1 model selected
+Traceback (most recent call last):
+File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
+packages\chimerax\struct_measure\tool.py", line 246, in _create_angle
+self.angle_table.setItem(num_rows, 4,
+QTableWidgetItem(self._angle_text(sel_atoms)))
+^^^^^^^^^^^^^^^^^^^^^^^^^^^
+File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
+packages\chimerax\struct_measure\tool.py", line 94, in _angle_text
+return self._angle_fmt % func(*[a.scene_coord for a in atoms])
+~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ValueError: unsupported format character '-' (0x2d) at index 2
+ValueError: unsupported format character '-' (0x2d) at index 2
+File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
+packages\chimerax\struct_measure\tool.py", line 94, in _angle_text
+return self._angle_fmt % func(*[a.scene_coord for a in atoms])
+~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+See log for complete Python traceback.
+Traceback (most recent call last):
+File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
+packages\chimerax\struct_measure\tool.py", line 268, in _delete_angle
+del self._angle_info[row]
+~~~~~~~~~~~~~~~~^^^^^
+IndexError: list assignment index out of range
+IndexError: list assignment index out of range
+File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
+packages\chimerax\struct_measure\tool.py", line 268, in _delete_angle
+del self._angle_info[row]
+~~~~~~~~~~~~~~~~^^^^^
+See log for complete Python traceback.
+> select clear
+[Repeated 1 time(s)]
+> select #7/B:652@CA
+atom, 1 residue, 1 model selected
+> select add #7/B:680@CA
+atoms, 2 residues, 1 model selected
+> view sel
+> show #!1 models
+> hide #!1 models
+> show #!1 models
+> select #7/B:679
+atoms, 8 bonds, 1 residue, 1 model selected
+> select #1/A:679@CB
+atom, 1 residue, 1 model selected
+> select #7/B:679
+atoms, 8 bonds, 1 residue, 1 model selected
+> select up
+atoms, 1 bond, 1 residue, 1 model selected
+> hide sel atoms
+> show sel cartoons
+> select clear
+> select #7/B:679
+atoms, 8 bonds, 1 residue, 1 model selected
+> show sel atoms
+> hide sel cartoons
+> color sel byhetero
+[deleted to fit within ticket limits]
 > select clear