id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 15241 Crash changing Mac display configuration chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-12.7.4-x86_64-i386-64bit ChimeraX Version: 1.8.dev202404300104 (2024-04-30 01:04:30 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Segmentation fault Current thread 0x000000010f01b600 (most recent call first): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py"", line 283 in event_loop File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1006 in init File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1169 in File """", line 88 in _run_code File """", line 198 in _run_module_as_main Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, lxml._elementpath, lxml.etree, chimerax.map._map, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.surface._surface, chimerax.pdb_lib._load_libs, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, lz4._version, lz4.frame._frame, msgpack._cmsgpack, chimerax.core._serialize, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.pdb._pdbio, chimerax.atom_search.ast, PIL._imagingmath, chimerax.chem_group._chem_group (total: 61) {""app_name"":""ChimeraX"",""timestamp"":""2024-05-17 13:05:26.00 -0500"",""app_version"":""1.8.0"",""slice_uuid"":""194a3167-3db5-3029-8d22-1d742b826bb9"",""build_version"":""1.8.0.0"",""platform"":1,""bundleID"":""edu.ucsf.cgl.ChimeraX"",""share_with_app_devs"":1,""is_first_party"":0,""bug_type"":""309"",""os_version"":""macOS 12.7.4 (21H1123)"",""incident_id"":""363A5A07-0086-41A5-AA54-A9882CB611BA"",""name"":""ChimeraX""} { ""uptime"" : 340000, ""procLaunch"" : ""2024-05-17 10:22:10.8459 -0500"", ""procRole"" : ""Foreground"", ""version"" : 2, ""userID"" : 503, ""deployVersion"" : 210, ""modelCode"" : ""iMac17,1"", ""procStartAbsTime"" : 332977986485338, ""coalitionID"" : 17830, ""osVersion"" : { ""train"" : ""macOS 12.7.4"", ""build"" : ""21H1123"", ""releaseType"" : ""User"" }, ""captureTime"" : ""2024-05-17 13:05:22.7376 -0500"", ""incident"" : ""363A5A07-0086-41A5-AA54-A9882CB611BA"", ""bug_type"" : ""309"", ""pid"" : 25629, ""procExitAbsTime"" : 342769249936023, ""cpuType"" : ""X86-64"", ""procName"" : ""ChimeraX"", ""procPath"" : ""\/Applications\/ChimeraX_Daily.app\/Contents\/MacOS\/ChimeraX"", ""bundleInfo"" : {""CFBundleShortVersionString"":""1.8.0"",""CFBundleVersion"":""1.8.0.0"",""CFBundleIdentifier"":""edu.ucsf.cgl.ChimeraX""}, ""storeInfo"" : {""deviceIdentifierForVendor"":""468F97BF-0DAA-50F2-8BCA-911D552D136E"",""thirdParty"":true}, ""parentProc"" : ""launchd"", ""parentPid"" : 1, ""coalitionName"" : ""edu.ucsf.cgl.ChimeraX"", ""crashReporterKey"" : ""1084A283-DC3B-E83B-EDB4-571ACCB1FA24"", ""sip"" : ""enabled"", ""vmRegionInfo"" : ""0 is not in any region. Bytes before following region: 4442677248\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n __TEXT 108cde000-108ce2000 [ 16K] r-x\/r-x SM=COW ...acOS\/ChimeraX"", ""isCorpse"" : 1, ""exception"" : {""codes"":""0x0000000000000001, 0x0000000000000000"",""rawCodes"":[1,0],""type"":""EXC_BAD_ACCESS"",""signal"":""SIGSEGV"",""subtype"":""KERN_INVALID_ADDRESS at 0x0000000000000000""}, ""vmregioninfo"" : ""0 is not in any region. Bytes before following region: 4442677248\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n __TEXT 108cde000-108ce2000 [ 16K] r-x\/r-x SM=COW ...acOS\/ChimeraX"", ""extMods"" : {""caller"":{""thread_create"":0,""thread_set_state"":0,""task_for_pid"":0},""system"":{""thread_create"":0,""thread_set_state"":0,""task_for_pid"":0},""targeted"":{""thread_create"":0,""thread_set_state"":0,""task_for_pid"":0},""warnings"":0}, ""faultingThread"" : 0, ""threads"" : [{""triggered"":true,""id"":10203873,""threadState"":{""r13"":{""value"":1},""rax"":{""value"":0},""rflags"":{""value"":582},""cpu"":{""value"":0},""r14"":{""value"":11},""rsi"":{""value"":11},""r8"":{""value"":2},""cr2"":{""value"":0},""rdx"":{""value"":0},""r10"":{""value"":4546737664,""symbolLocation"":0,""symbol"":""_main_thread""},""r9"":{""value"":14757395258967641293},""r15"":{""value"":22},""rbx"":{""value"":4546737664,""symbolLocation"":0,""symbol"":""_main_thread""},""trap"":{""value"":133},""err"":{""value"":33554760},""r11"":{""value"":582},""rip"":{""value"":140703328526286,""matchesCrashFrame"":1},""rbp"":{""value"":140398909225488},""rsp"":{""value"":140398909225448},""r12"":{""value"":259},""rcx"":{""value"":140398909225448},""flavor"":""x86_THREAD_STATE"",""rdi"":{""value"":259}},""name"":""CrBrowserMain"",""queue"":""com.apple.main-thread"",""frames"":[{""imageOffset"":32718,""symbol"":""__pthread_kill"",""symbolLocation"":10,""imageIndex"":0},{""imageOffset"":25087,""symbol"":""pthread_kill"",""symbolLocation"":263,""imageIndex"":1},{""imageOffset"":279240,""symbol"":""raise"",""symbolLocation"":26,""imageIndex"":2},{""imageOffset"":2540852,""symbol"":""faulthandler_fatal_error"",""symbolLocation"":388,""imageIndex"":3},{""imageOffset"":15869,""symbol"":""_sigtramp"",""symbolLocation"":29,""imageIndex"":4},{""imageOffset"":0,""imageIndex"":5},{""imageOffset"":374118,""imageIndex"":6},{""imageOffset"":423955,""symbol"":""_NSViewHierarchyDidChangeBackingProperties"",""symbolLocation"":394,""imageIndex"":7},{""imageOffset"":9198252,""symbol"":""-[NSWindow _postWindowDidChangeBackingPropertiesAndDisplayWindowForPreviousBackingScaleFactor:previousColorSpace:]"",""symbolLocation"":222,""imageIndex"":7},{""imageOffset"":2533090,""symbol"":""__67-[NSWindow _updateSettingsSendingScreenChangeNotificationToScreen:]_block_invoke"",""symbolLocation"":539,""imageIndex"":7},{""imageOffset"":579543,""symbol"":""NSPerformVisuallyAtomicChange"",""symbolLocation"":132,""imageIndex"":7},{""imageOffset"":2532545,""symbol"":""-[NSWindow _updateSettingsSendingScreenChangeNotificationToScreen:]"",""symbolLocation"":69,""imageIndex"":7},{""imageOffset"":585625,""symbol"":""-[NSWindow _setFrameCommon:display:fromServer:]"",""symbolLocation"":1321,""imageIndex"":7},{""imageOffset"":9207683,""symbol"":""-[NSWindow _windowMovedToRect:dueToMoveEvent:]"",""symbolLocation"":133,""imageIndex"":7},{""imageOffset"":1778085,""symbol"":""-[NSWindow _windowMoved:]"",""symbolLocation"":1019,""imageIndex"":7},{""imageOffset"":1777034,""symbol"":""-[NSWindow _internalHandleAppKitDefinedEvent:]"",""symbolLocation"":239,""imageIndex"":7},{""imageOffset"":1772999,""symbol"":""-[NSWindow(NSEventRouting) _reallySendEvent:isDelayedEvent:]"",""symbolLocation"":3771,""imageIndex"":7},{""imageOffset"":1768690,""symbol"":""-[NSWindow(NSEventRouting) sendEvent:]"",""symbolLocation"":352,""imageIndex"":7},{""imageOffset"":453268,""imageIndex"":6},{""imageOffset"":1764064,""symbol"":""-[NSApplication(NSEvent) sendEvent:]"",""symbolLocation"":2936,""imageIndex"":7},{""imageOffset"":40938,""imageIndex"":6},{""imageOffset"":4615946,""symbol"":""-[NSApplication _handleEvent:]"",""symbolLocation"":65,""imageIndex"":7},{""imageOffset"":194621,""symbol"":""-[NSApplication run]"",""symbolLocation"":623,""imageIndex"":7},{""imageOffset"":93965,""imageIndex"":6},{""imageOffset"":583190,""symbol"":""QEventLoop::exec(QFlags)"",""symbolLocation"":486,""imageIndex"":8},{""imageOffset"":545047,""symbol"":""QCoreApplication::exec()"",""symbolLocation"":119,""imageIndex"":8},{""imageOffset"":2261324,""symbol"":""meth_QApplication_exec(_object*, _object*)"",""symbolLocation"":92,""imageIndex"":9},{""imageOffset"":1044954,""symbol"":""cfunction_call"",""symbolLocation"":90,""imageIndex"":3},{""imageOffset"":630769,""symbol"":""_PyObject_MakeTpCall"",""symbolLocation"":129,""imageIndex"":3},{""imageOffset"":1868407,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":61255,""imageIndex"":3},{""imageOffset"":1802218,""symbol"":""PyEval_EvalCode"",""symbolLocation"":282,""imageIndex"":3},{""imageOffset"":1779827,""symbol"":""builtin_exec"",""symbolLocation"":483,""imageIndex"":3},{""imageOffset"":1047348,""symbol"":""cfunction_vectorcall_FASTCALL_KEYWORDS"",""symbolLocation"":68,""imageIndex"":3},{""imageOffset"":1868159,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":61007,""imageIndex"":3},{""imageOffset"":1892992,""symbol"":""_PyEval_Vector"",""symbolLocation"":128,""imageIndex"":3},{""imageOffset"":2512477,""symbol"":""pymain_run_module"",""symbolLocation"":253,""imageIndex"":3},{""imageOffset"":2511137,""symbol"":""Py_RunMain"",""symbolLocation"":2225,""imageIndex"":3},{""imageOffset"":2515163,""symbol"":""pymain_main"",""symbolLocation"":43,""imageIndex"":3},{""imageOffset"":2515114,""symbol"":""Py_Main"",""symbolLocation"":42,""imageIndex"":3},{""imageOffset"":15770,""symbol"":""main"",""symbolLocation"":122,""imageIndex"":10},{""imageOffset"":21806,""symbol"":""start"",""symbolLocation"":462,""imageIndex"":11}]},{""id"":10204499,""name"":""ThreadPoolServiceThread"",""frames"":[{""imageOffset"":43146,""symbol"":""kevent64"",""symbolLocation"":10,""imageIndex"":0},{""imageOffset"":75593716,""imageIndex"":12},{""imageOffset"":75593183,""imageIndex"":12},{""imageOffset"":75194449,""imageIndex"":12},{""imageOffset"":74879192,""imageIndex"":12},{""imageOffset"":75351720,""imageIndex"":12},{""imageOffset"":75245773,""imageIndex"":12},{""imageOffset"":75352126,""imageIndex"":12},{""imageOffset"":75466040,""imageIndex"":12},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":1},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":1}]},{""id"":10204500,""name"":""ThreadPoolForegroundWorker"",""frames"":[{""imageOffset"":6458,""symbol"":""mach_msg_trap"",""symbolLocation"":10,""imageIndex"":0},{""imageOffset"":7336,""symbol"":""mach_msg"",""symbolLocation"":56,""imageIndex"":0},{""imageOffset"":75634614,""imageIndex"":12},{""imageOffset"":75039302,""imageIndex"":12},{""imageOffset"":75293834,""imageIndex"":12},{""imageOffset"":75297738,""imageIndex"":12},{""imageOffset"":75295997,""imageIndex"":12},{""imageOffset"":75295727,""imageIndex"":12},{""imageOffset"":75466040,""imageIndex"":12},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":1},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":1}]},{""id"":10204501,""name"":""ThreadPoolBackgroundWorker"",""frames"":[{""imageOffset"":6458,""symbol"":""mach_msg_trap"",""symbolLocation"":10,""imageIndex"":0},{""imageOffset"":7336,""symbol"":""mach_msg"",""symbolLocation"":56,""imageIndex"":0},{""imageOffset"":75634614,""imageIndex"":12},{""imageOffset"":75039302,""imageIndex"":12},{""imageOffset"":75293834,""imageIndex"":12},{""imageOffset"":75297738,""imageIndex"":12},{""imageOffset"":75295853,""imageIndex"":12},{""imageOffset"":75295764,""imageIndex"":12},{""imageOffset"":75466040,""imageIndex"":12},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":1},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":1}]},{""id"":10204502,""name"":""Chrome_IOThread"",""frames"":[{""imageOffset"":43146,""symbol"":""kevent64"",""symbolLocation"":10,""imageIndex"":0},{""imageOffset"":75593716,""imageIndex"":12},{""imageOffset"":75593183,""imageIndex"":12},{""imageOffset"":75194449,""imageIndex"":12},{""imageOffset"":74879192,""imageIndex"":12},{""imageOffset"":75351720,""imageIndex"":12},{""imageOffset"":48358146,""imageIndex"":12},{""imageOffset"":75352126,""imageIndex"":12},{""imageOffset"":75466040,""imageIndex"":12},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":1},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":1}]},{""id"":10204503,""name"":""NetworkConfigWatcher"",""frames"":[{""imageOffset"":6458,""symbol"":""mach_msg_trap"",""symbolLocation"":10,""imageIndex"":0},{""imageOffset"":7336,""symbol"":""mach_msg"",""symbolLocation"":56,""imageIndex"":0},{""imageOffset"":75634614,""imageIndex"":12},{""imageOffset"":75039302,""imageIndex"":12},{""imageOffset"":75039155,""imageIndex"":12},{""imageOffset"":74666185,""imageIndex"":12},{""imageOffset"":75194449,""imageIndex"":12},{""imageOffset"":74879192,""imageIndex"":12},{""imageOffset"":75351720,""imageIndex"":12},{""imageOffset"":75352126,""imageIndex"":12},{""imageOffset"":75466040,""imageIndex"":12},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":1},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":1}]},{""id"":10204509,""name"":""Chrome_InProcGpuThread"",""frames"":[{""imageOffset"":6458,""symbol"":""mach_msg_trap"",""symbolLocation"":10,""imageIndex"":0},{""imageOffset"":7336,""symbol"":""mach_msg"",""symbolLocation"":56,""imageIndex"":0},{""imageOffset"":75634614,""imageIndex"":12},{""imageOffset"":75039302,""imageIndex"":12},{""imageOffset"":75039155,""imageIndex"":12},{""imageOffset"":74666185,""imageIndex"":12},{""imageOffset"":75194449,""imageIndex"":12},{""imageOffset"":74879192,""imageIndex"":12},{""imageOffset"":75351720,""imageIndex"":12},{""imageOffset"":75352126,""imageIndex"":12},{""imageOffset"":75466040,""imageIndex"":12},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":1},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":1}]},{""id"":10204510,""name"":""Chrome_ChildIOThread"",""frames"":[{""imageOffset"":43146,""symbol"":""kevent64"",""symbolLocation"":10,""imageIndex"":0},{""imageOffset"":75593716,""imageIndex"":12},{""imageOffset"":75593183,""imageIndex"":12},{""imageOffset"":75194449,""imageIndex"":12},{""imageOffset"":74879192,""imageIndex"":12},{""imageOffset"":75351720,""imageIndex"":12},{""imageOffset"":122838530,""imageIndex"":12},{""imageOffset"":75352126,""imageIndex"":12},{""imageOffset"":75466040,""imageIndex"":12},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":1},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":1}]},{""id"":10204511,""name"":""CompositorTileWorker1"",""frames"":[{""imageOffset"":17322,""symbol"":""__psynch_cvwait"",""symbolLocation"":10,""imageIndex"":0},{""imageOffset"":27247,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1249,""imageIndex"":1},{""imageOffset"":75462980,""imageIndex"":12},{""imageOffset"":113394117,""imageIndex"":12},{""imageOffset"":75466040,""imageIndex"":12},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":1},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":1}]},{""id"":10204512,""name"":""ThreadPoolSingleThreadSharedForeground0"",""frames"":[{""imageOffset"":6458,""symbol"":""mach_msg_trap"",""symbolLocation"":10,""imageIndex"":0},{""imageOffset"":7336,""symbol"":""mach_msg"",""symbolLocation"":56,""imageIndex"":0},{""imageOffset"":75634614,""imageIndex"":12},{""imageOffset"":75039302,""imageIndex"":12},{""imageOffset"":75293834,""imageIndex"":12},{""imageOffset"":75296343,""imageIndex"":12},{""imageOffset"":75296045,""imageIndex"":12},{""imageOffset"":75295784,""imageIndex"":12},{""imageOffset"":75466040,""imageIndex"":12},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":1},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":1}]},{""id"":10204513,""name"":""VizCompositorThread"",""frames"":[{""imageOffset"":6458,""symbol"":""mach_msg_trap"",""symbolLocation"":10,""imageIndex"":0},{""imageOffset"":7336,""symbol"":""mach_msg"",""symbolLocation"":56,""imageIndex"":0},{""imageOffset"":75634614,""imageIndex"":12},{""imageOffset"":75039302,""imageIndex"":12},{""imageOffset"":75039155,""imageIndex"":12},{""imageOffset"":74666185,""imageIndex"":12},{""imageOffset"":75194449,""imageIndex"":12},{""imageOffset"":74879192,""imageIndex"":12},{""imageOffset"":75351720,""imageIndex"":12},{""imageOffset"":75352126,""imageIndex"":12},{""imageOffset"":75466040,""imageIndex"":12},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":1},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":1}]},{""id"":10204514,""name"":""NetworkConfigWatcher"",""frames"":[{""imageOffset"":6458,""symbol"":""mach_msg_trap"",""symbolLocation"":10,""imageIndex"":0},{""imageOffset"":7336,""symbol"":""mach_msg"",""symbolLocation"":56,""imageIndex"":0},{""imageOffset"":75634614,""imageIndex"":12},{""imageOffset"":75039302,""imageIndex"":12},{""imageOffset"":75039155,""imageIndex"":12},{""imageOffset"":74666185,""imageIndex"":12},{""imageOffset"":75194449,""imageIndex"":12},{""imageOffset"":74879192,""imageIndex"":12},{""imageOffset"":75351720,""imageIndex"":12},{""imageOffset"":75352126,""imageIndex"":12},{""imageOffset"":75466040,""imageIndex"":12},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":1},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":1}]},{""id"":10204547,""name"":""NetworkService"",""frames"":[{""imageOffset"":43146,""symbol"":""kevent64"",""symbolLocation"":10,""imageIndex"":0},{""imageOffset"":75593716,""imageIndex"":12},{""imageOffset"":75593183,""imageIndex"":12},{""imageOffset"":75194449,""imageIndex"":12},{""imageOffset"":74879192,""imageIndex"":12},{""imageOffset"":75351720,""imageIndex"":12},{""imageOffset"":75352126,""imageIndex"":12},{""imageOffset"":75466040,""imageIndex"":12},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":1},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":1}]},{""id"":10204548,""name"":""NetworkConfigWatcher"",""frames"":[{""imageOffset"":6458,""symbol"":""mach_msg_trap"",""symbolLocation"":10,""imageIndex"":0},{""imageOffset"":7336,""symbol"":""mach_msg"",""symbolLocation"":56,""imageIndex"":0},{""imageOffset"":75634614,""imageIndex"":12},{""imageOffset"":75039302,""imageIndex"":12},{""imageOffset"":75039155,""imageIndex"":12},{""imageOffset"":74666185,""imageIndex"":12},{""imageOffset"":75194449,""imageIndex"":12},{""imageOffset"":74879192,""imageIndex"":12},{""imageOffset"":75351720,""imageIndex"":12},{""imageOffset"":75352126,""imageIndex"":12},{""imageOffset"":75466040,""imageIndex"":12},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":1},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":1}]},{""id"":10204549,""name"":""ThreadPoolSingleThreadForegroundBlocking1"",""frames"":[{""imageOffset"":6458,""symbol"":""mach_msg_trap"",""symbolLocation"":10,""imageIndex"":0},{""imageOffset"":7336,""symbol"":""mach_msg"",""symbolLocation"":56,""imageIndex"":0},{""imageOffset"":75634614,""imageIndex"":12},{""imageOffset"":75039302,""imageIndex"":12},{""imageOffset"":75293834,""imageIndex"":12},{""imageOffset"":75297738,""imageIndex"":12},{""imageOffset"":75296093,""imageIndex"":12},{""imageOffset"":75295774,""imageIndex"":12},{""imageOffset"":75466040,""imageIndex"":12},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":1},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":1}]},{""id"":10204571,""name"":""NetworkConfigWatcher"",""frames"":[{""imageOffset"":6458,""symbol"":""mach_msg_trap"",""symbolLocation"":10,""imageIndex"":0},{""imageOffset"":7336,""symbol"":""mach_msg"",""symbolLocation"":56,""imageIndex"":0},{""imageOffset"":75634614,""imageIndex"":12},{""imageOffset"":75039302,""imageIndex"":12},{""imageOffset"":75039155,""imageIndex"":12},{""imageOffset"":74666185,""imageIndex"":12},{""imageOffset"":75194449,""imageIndex"":12},{""imageOffset"":74879192,""imageIndex"":12},{""imageOffset"":75351720,""imageIndex"":12},{""imageOffset"":75352126,""imageIndex"":12},{""imageOffset"":75466040,""imageIndex"":12},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":1},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":1}]},{""id"":10204782,""name"":""MemoryInfra"",""frames"":[{""imageOffset"":6458,""symbol"":""mach_msg_trap"",""symbolLocation"":10,""imageIndex"":0},{""imageOffset"":7336,""symbol"":""mach_msg"",""symbolLocation"":56,""imageIndex"":0},{""imageOffset"":75634614,""imageIndex"":12},{""imageOffset"":75039302,""imageIndex"":12},{""imageOffset"":75039155,""imageIndex"":12},{""imageOffset"":74666185,""imageIndex"":12},{""imageOffset"":75194449,""imageIndex"":12},{""imageOffset"":74879192,""imageIndex"":12},{""imageOffset"":75351720,""imageIndex"":12},{""imageOffset"":75352126,""imageIndex"":12},{""imageOffset"":75466040,""imageIndex"":12},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":1},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":1}]},{""id"":10204783,""name"":""ThreadPoolSingleThreadSharedBackgroundBlocking2"",""frames"":[{""imageOffset"":6458,""symbol"":""mach_msg_trap"",""symbolLocation"":10,""imageIndex"":0},{""imageOffset"":7336,""symbol"":""mach_msg"",""symbolLocation"":56,""imageIndex"":0},{""imageOffset"":75634614,""imageIndex"":12},{""imageOffset"":75039302,""imageIndex"":12},{""imageOffset"":75293834,""imageIndex"":12},{""imageOffset"":75296343,""imageIndex"":12},{""imageOffset"":75295901,""imageIndex"":12},{""imageOffset"":75295804,""imageIndex"":12},{""imageOffset"":75466040,""imageIndex"":12},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":1},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":1}]},{""id"":10204805,""name"":""com.apple.NSEventThread"",""frames"":[{""imageOffset"":6458,""symbol"":""mach_msg_trap"",""symbolLocation"":10,""imageIndex"":0},{""imageOffset"":7336,""symbol"":""mach_msg"",""symbolLocation"":56,""imageIndex"":0},{""imageOffset"":524957,""symbol"":""__CFRunLoopServiceMachPort"",""symbolLocation"":319,""imageIndex"":13},{""imageOffset"":518440,""symbol"":""__CFRunLoopRun"",""symbolLocation"":1276,""imageIndex"":13},{""imageOffset"":515436,""symbol"":""CFRunLoopRunSpecific"",""symbolLocation"":562,""imageIndex"":13},{""imageOffset"":1754482,""symbol"":""_NSEventThread"",""symbolLocation"":132,""imageIndex"":7},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":1},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":1}]},{""id"":10204922,""frames"":[{""imageOffset"":17322,""symbol"":""__psynch_cvwait"",""symbolLocation"":10,""imageIndex"":0},{""imageOffset"":27247,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1249,""imageIndex"":1},{""imageOffset"":48418,""symbol"":""std::__1::condition_variable::wait(std::__1::unique_lock&)"",""symbolLocation"":18,""imageIndex"":14},{""imageOffset"":108261782,""imageIndex"":12},{""imageOffset"":108267659,""imageIndex"":12},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":1},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":1}]},{""id"":10204923,""frames"":[{""imageOffset"":17322,""symbol"":""__psynch_cvwait"",""symbolLocation"":10,""imageIndex"":0},{""imageOffset"":27247,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1249,""imageIndex"":1},{""imageOffset"":48418,""symbol"":""std::__1::condition_variable::wait(std::__1::unique_lock&)"",""symbolLocation"":18,""imageIndex"":14},{""imageOffset"":108261782,""imageIndex"":12},{""imageOffset"":108267659,""imageIndex"":12},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":1},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":1}]},{""id"":10204924,""frames"":[{""imageOffset"":17322,""symbol"":""__psynch_cvwait"",""symbolLocation"":10,""imageIndex"":0},{""imageOffset"":27247,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1249,""imageIndex"":1},{""imageOffset"":48418,""symbol"":""std::__1::condition_variable::wait(std::__1::unique_lock&)"",""symbolLocation"":18,""imageIndex"":14},{""imageOffset"":108261782,""imageIndex"":12},{""imageOffset"":108267659,""imageIndex"":12},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":1},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":1}]},{""id"":10204925,""frames"":[{""imageOffset"":17322,""symbol"":""__psynch_cvwait"",""symbolLocation"":10,""imageIndex"":0},{""imageOffset"":27247,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1249,""imageIndex"":1},{""imageOffset"":48418,""symbol"":""std::__1::condition_variable::wait(std::__1::unique_lock&)"",""symbolLocation"":18,""imageIndex"":14},{""imageOffset"":108261782,""imageIndex"":12},{""imageOffset"":108267659,""imageIndex"":12},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":1},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":1}]},{""id"":10205623,""frames"":[{""imageOffset"":17322,""symbol"":""__psynch_cvwait"",""symbolLocation"":10,""imageIndex"":0},{""imageOffset"":27247,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1249,""imageIndex"":1},{""imageOffset"":3470047,""symbol"":""blas_thread_server"",""symbolLocation"":207,""imageIndex"":15},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":1},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":1}]},{""id"":10205624,""frames"":[{""imageOffset"":17322,""symbol"":""__psynch_cvwait"",""symbolLocation"":10,""imageIndex"":0},{""imageOffset"":27247,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1249,""imageIndex"":1},{""imageOffset"":3470047,""symbol"":""blas_thread_server"",""symbolLocation"":207,""imageIndex"":15},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":1},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":1}]},{""id"":10205625,""frames"":[{""imageOffset"":17322,""symbol"":""__psynch_cvwait"",""symbolLocation"":10,""imageIndex"":0},{""imageOffset"":27247,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1249,""imageIndex"":1},{""imageOffset"":3470047,""symbol"":""blas_thread_server"",""symbolLocation"":207,""imageIndex"":15},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":1},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":1}]},{""id"":10312891,""name"":""NetworkConfigWatcher"",""frames"":[{""imageOffset"":6458,""symbol"":""mach_msg_trap"",""symbolLocation"":10,""imageIndex"":0},{""imageOffset"":7336,""symbol"":""mach_msg"",""symbolLocation"":56,""imageIndex"":0},{""imageOffset"":75634614,""imageIndex"":12},{""imageOffset"":75039302,""imageIndex"":12},{""imageOffset"":75039155,""imageIndex"":12},{""imageOffset"":74666185,""imageIndex"":12},{""imageOffset"":75194449,""imageIndex"":12},{""imageOffset"":74879192,""imageIndex"":12},{""imageOffset"":75351720,""imageIndex"":12},{""imageOffset"":75352126,""imageIndex"":12},{""imageOffset"":75466040,""imageIndex"":12},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":1},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":1}]},{""id"":10583571,""frames"":[{""imageOffset"":8008,""symbol"":""start_wqthread"",""symbolLocation"":0,""imageIndex"":1}]},{""id"":10586722,""frames"":[{""imageOffset"":8008,""symbol"":""start_wqthread"",""symbolLocation"":0,""imageIndex"":1}]},{""id"":10586741,""frames"":[{""imageOffset"":8008,""symbol"":""start_wqthread"",""symbolLocation"":0,""imageIndex"":1}]},{""id"":10586742,""frames"":[{""imageOffset"":8008,""symbol"":""start_wqthread"",""symbolLocation"":0,""imageIndex"":1}]}], ""usedImages"" : [ { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 140703328493568, ""size"" : 229376, ""uuid"" : ""7112a9e8-9afd-3210-a4e7-b3086b5a11b6"", ""path"" : ""\/usr\/lib\/system\/libsystem_kernel.dylib"", ""name"" : ""libsystem_kernel.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 140703328722944, ""size"" : 49152, ""uuid"" : ""5a5f7316-85b7-315e-baf3-76211ee65604"", ""path"" : ""\/usr\/lib\/system\/libsystem_pthread.dylib"", ""name"" : ""libsystem_pthread.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 140703327477760, ""size"" : 561152, ""uuid"" : ""202d7260-ea46-3956-a471-19c9bcf45274"", ""path"" : ""\/usr\/lib\/system\/libsystem_c.dylib"", ""name"" : ""libsystem_c.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4458016768, ""CFBundleShortVersionString"" : ""3.11.4, (c) 2001-2023 Python Software Foundation."", ""CFBundleIdentifier"" : ""org.python.python"", ""size"" : 4030464, ""uuid"" : ""514efc82-c424-3863-84a8-e24ffd50343d"", ""path"" : ""\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/Python"", ""name"" : ""Python"", ""CFBundleVersion"" : ""3.11.4"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 140703328821248, ""size"" : 40960, ""uuid"" : ""81a897b2-8752-3f99-833e-da16ffa9fa58"", ""path"" : ""\/usr\/lib\/system\/libsystem_platform.dylib"", ""name"" : ""libsystem_platform.dylib"" }, { ""size"" : 0, ""source"" : ""A"", ""base"" : 0, ""uuid"" : ""00000000-0000-0000-0000-000000000000"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4815241216, ""size"" : 655360, ""uuid"" : ""a9df58b1-89b1-36c8-9d9e-fe251bf025f2"", ""path"" : ""\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/platforms\/libqcocoa.dylib"", ""name"" : ""libqcocoa.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 140703373594624, ""CFBundleShortVersionString"" : ""6.9"", ""CFBundleIdentifier"" : ""com.apple.AppKit"", ""size"" : 15269888, ""uuid"" : ""e8f3aa77-abd4-3c87-ac98-e3bcef1b290f"", ""path"" : ""\/System\/Library\/Frameworks\/AppKit.framework\/Versions\/C\/AppKit"", ""name"" : ""AppKit"", ""CFBundleVersion"" : ""2113.65.150"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4525961216, ""size"" : 5373952, ""uuid"" : ""f4950342-54e3-3755-a88f-e2a6406c1fc3"", ""path"" : ""\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtCore.framework\/Versions\/A\/QtCore"", ""name"" : ""QtCore"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4537180160, ""size"" : 2867200, ""uuid"" : ""04d3e498-8e36-3f03-9aa5-8a19040cc57f"", ""path"" : ""\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWidgets.abi3.so"", ""name"" : ""QtWidgets.abi3.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4442677248, ""CFBundleShortVersionString"" : ""1.8.0"", ""CFBundleIdentifier"" : ""edu.ucsf.cgl.ChimeraX"", ""size"" : 16384, ""uuid"" : ""194a3167-3db5-3029-8d22-1d742b826bb9"", ""path"" : ""\/Applications\/ChimeraX_Daily.app\/Contents\/MacOS\/ChimeraX"", ""name"" : ""ChimeraX"", ""CFBundleVersion"" : ""1.8.0.0"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4546211840, ""size"" : 442368, ""uuid"" : ""430a12c9-134a-3904-9d88-c2df933fdf54"", ""path"" : ""\/usr\/lib\/dyld"", ""name"" : ""dyld"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 5182771200, ""size"" : 183599104, ""uuid"" : ""af091873-5278-3492-8e76-7c22e65c04ac"", ""path"" : ""\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWebEngineCore.framework\/Versions\/A\/QtWebEngineCore"", ""name"" : ""QtWebEngineCore"" }, { ""source"" : ""P"", ""arch"" : ""x86_64h"", ""base"" : 140703329038336, ""CFBundleShortVersionString"" : ""6.9"", ""CFBundleIdentifier"" : ""com.apple.CoreFoundation"", ""size"" : 5255168, ""uuid"" : ""fb79a14a-fda9-3a3b-bc97-6eb525b794a6"", ""path"" : ""\/System\/Library\/Frameworks\/CoreFoundation.framework\/Versions\/A\/CoreFoundation"", ""name"" : ""CoreFoundation"", ""CFBundleVersion"" : ""1866"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 140703328038912, ""size"" : 364544, ""uuid"" : ""a372724f-4642-369b-a01b-28e1f5e83ff1"", ""path"" : ""\/usr\/lib\/libc++.1.dylib"", ""name"" : ""libc++.1.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4639649792, ""size"" : 66404352, ""uuid"" : ""7048d1fd-b9a9-3f6a-b752-ae8be69f6c3f"", ""path"" : ""\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libopenblas64_.0.dylib"", ""name"" : ""libopenblas64_.0.dylib"" } ], ""sharedCache"" : { ""base"" : 140703325462528, ""size"" : 19331678208, ""uuid"" : ""49e18b84-2cd0-3c1e-9270-0e198c2fdf68"" }, ""vmSummary"" : ""ReadOnly portion of Libraries: Total=1.5G resident=0K(0%) swapped_out_or_unallocated=1.5G(100%)\nWritable regions: Total=1.2G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.2G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 2304K 18 \nActivity Tracing 256K 1 \nCG backing stores 4560K 8 \nCG image 928K 79 \nColorSync 232K 28 \nCoreAnimation 2776K 103 \nCoreGraphics 16K 3 \nCoreServices 624K 2 \nCoreUI image data 5268K 47 \nDispatch continuations 32.0M 1 \nFoundation 36K 2 \nIOKit 15.5M 2 \nKernel Alloc Once 8K 1 \nMALLOC 685.4M 1408 \nMALLOC guard page 32K 8 \nMALLOC_LARGE (reserved) 256K 1 reserved VM address space (unallocated)\nMach message 24K 3 \nOpenGL GLSL 384K 4 \nSTACK GUARD 120K 30 \nStack 158.2M 31 \nStack Guard 56.0M 1 \nVM_ALLOCATE 355.9M 434 \n__CTF 756 1 \n__DATA 52.0M 713 \n__DATA_CONST 40.9M 406 \n__DATA_DIRTY 1796K 234 \n__FONT_DATA 4K 1 \n__GLSLBUILTINS 5176K 1 \n__LINKEDIT 677.8M 164 \n__OBJC_RO 82.9M 1 \n__OBJC_RW 3200K 2 \n__TEXT 854.9M 714 \n__UNICODE 592K 1 \ndyld private memory 1056K 2 \nmapped file 515.1M 77 \nshared memory 2972K 26 \n=========== ======= ======= \nTOTAL 3.5G 4558 \nTOTAL, minus reserved VM space 3.5G 4558 \n"", ""legacyInfo"" : { ""threadTriggered"" : { ""name"" : ""CrBrowserMain"", ""queue"" : ""com.apple.main-thread"" } }, ""trialInfo"" : { ""rollouts"" : [ { ""rolloutId"" : ""60da5e84ab0ca017dace9abf"", ""factorPackIds"" : { }, ""deploymentId"" : 240000008 }, { ""rolloutId"" : ""60f8ddccefea4203d95cbeef"", ""factorPackIds"" : { }, ""deploymentId"" : 240000025 } ], ""experiments"" : [ ] } } ===== Log before crash start ===== UCSF ChimeraX version: 1.8.dev202404300104 (2024-04-30) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Users/nageshpeddada/Downloads/cryo-em-data- > analysis/011624_IRF4_15min_analysis/model_building/cryosparc_model_building/alphafold_MIDN_F.L_Psmd2_F.L/overlay_cryoem_str.cxs Opened P24_J323_deepemhancer.mrc as #2, grid size 640,640,640, pixel 1.07, shown at level 0.148, step 1, values float32 Opened SA_jb100.mrc as #3, grid size 500,500,500, pixel 1.2, shown at level 0.0073, step 2, values float32 opened ChimeraX session > hide #4 models > show #4 models > hide #4 models > show #4 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > select #4/A:413 24 atoms, 23 bonds, 1 residue, 1 model selected > select up 686 atoms, 686 bonds, 38 residues, 1 model selected > show (sel-residues & sidechain) target ab > color sel byhetero > show #!1 models > select clear > hide #!1 models > select #4/A:413 24 atoms, 23 bonds, 1 residue, 1 model selected > select up 686 atoms, 686 bonds, 38 residues, 1 model selected > ui tool show Contacts > contacts sel restrict cross ignoreHiddenModels true color #424242 240 contacts > contacts sel restrict cross ignoreHiddenModels true color #424242 240 contacts > sele#B:464,8,11-12 Unknown command: sele#B:464,8,11-12 > ui tool show ""Show Sequence Viewer"" > sequence chain #4/B Alignment identifier is 4/B > save /Users/nageshpeddada/Downloads/cryo-em-data- > analysis/011624_IRF4_15min_analysis/model_building/cryosparc_model_building/alphafold_MIDN_F.L_Psmd2_F.L/overlay_cryoem_str2.cxs > contacts sel select true makePseudobonds false 4758 contacts > show (#4 & sel-residues & sidechain) target ab > ui tool show Contacts > contacts sel restrict cross ignoreHiddenModels true color #424242 39 contacts > contacts sel restrict cross ignoreHiddenModels true color #424242 39 contacts > contacts sel select true makePseudobonds false 6460 contacts > ui tool show Contacts > contacts sel restrict cross ignoreHiddenModels true color #424242 141 contacts > select clear > ui tool show Contacts Restriction atom specifier must not be blank > contacts sel restrict both ignoreHiddenModels true color #424242 No atoms match given atom specifier > select #4/A:381 24 atoms, 23 bonds, 1 residue, 1 model selected > select #4/A:381 24 atoms, 23 bonds, 1 residue, 1 model selected Restriction atom specifier must not be blank > contacts sel ignoreHiddenModels true color #424242 31 contacts > select #4/B:438 12 atoms, 11 bonds, 1 residue, 1 model selected > select #4/B:438 12 atoms, 11 bonds, 1 residue, 1 model selected > select #4/A:389 24 atoms, 23 bonds, 1 residue, 1 model selected > select #4/A:389-390 35 atoms, 34 bonds, 2 residues, 1 model selected > select clear > select #4/A:389 24 atoms, 23 bonds, 1 residue, 1 model selected > select #4/A:389 24 atoms, 23 bonds, 1 residue, 1 model selected > select #4/A:53-64,113-122,126-132,303-322,326-329,376-413 1534 atoms, 1533 bonds, 21 pseudobonds, 91 residues, 2 models selected > select clear > select #4/A:391 22 atoms, 21 bonds, 1 residue, 1 model selected > select #4/A:391 22 atoms, 21 bonds, 1 residue, 1 model selected > contacts sel ignoreHiddenModels true color #424242 33 contacts > select #4/B:464 10 atoms, 9 bonds, 1 residue, 1 model selected > select #4/B:464 10 atoms, 9 bonds, 1 residue, 1 model selected > show (sel-residues & sidechain) target ab > select #4/A:395 19 atoms, 18 bonds, 1 residue, 1 model selected > select #4/A:395 19 atoms, 18 bonds, 1 residue, 1 model selected > contacts sel ignoreHiddenModels true color #424242 21 contacts > select #4/B:461 14 atoms, 14 bonds, 1 residue, 1 model selected > select #4/B:461 14 atoms, 14 bonds, 1 residue, 1 model selected > show (sel-residues & sidechain) target ab > select #4/A:399 19 atoms, 18 bonds, 1 residue, 1 model selected > select #4/A:399 19 atoms, 18 bonds, 1 residue, 1 model selected > contacts sel ignoreHiddenModels true color #424242 26 contacts > select #4/A:402 22 atoms, 21 bonds, 1 residue, 1 model selected > select #4/A:402 22 atoms, 21 bonds, 1 residue, 1 model selected > contacts sel ignoreHiddenModels true color #424242 34 contacts > select #4/A:409 24 atoms, 23 bonds, 1 residue, 1 model selected > select #4/A:409 24 atoms, 23 bonds, 1 residue, 1 model selected > contacts sel ignoreHiddenModels true color #424242 31 contacts > select #4/A:391 22 atoms, 21 bonds, 1 residue, 1 model selected > select #4/A:391 22 atoms, 21 bonds, 1 residue, 1 model selected > contacts sel ignoreHiddenModels true color #424242 33 contacts > select #4/A:395 19 atoms, 18 bonds, 1 residue, 1 model selected > select #4/A:395 19 atoms, 18 bonds, 1 residue, 1 model selected > contacts sel ignoreHiddenModels true color #424242 21 contacts > select #4/A:399 19 atoms, 18 bonds, 1 residue, 1 model selected > select #4/A:399 19 atoms, 18 bonds, 1 residue, 1 model selected > contacts sel ignoreHiddenModels true color #424242 26 contacts > select #4/A:402 22 atoms, 21 bonds, 1 residue, 1 model selected > select #4/A:402 22 atoms, 21 bonds, 1 residue, 1 model selected > contacts sel ignoreHiddenModels true color #424242 34 contacts > select #4/A:409 24 atoms, 23 bonds, 1 residue, 1 model selected > select #4/A:409 24 atoms, 23 bonds, 1 residue, 1 model selected > contacts sel ignoreHiddenModels true color #424242 31 contacts > save /Users/nageshpeddada/Downloads/cryo-em-data- > analysis/011624_IRF4_15min_analysis/model_building/cryosparc_model_building/alphafold_MIDN_F.L_Psmd2_F.L/overlay_cryoem_str3.cxs > interfaces select & ~solvent Missing or invalid ""atoms"" argument: invalid atoms specifier > interfaces select & ~solvent Missing or invalid ""atoms"" argument: invalid atoms specifier > hbonds sel reveal true 6 hydrogen bonds found > hide #6 models > show #6 models > hide #5 models > interfaces select & ~solvent Missing or invalid ""atoms"" argument: invalid atoms specifier > sele#4/A:381arg Unknown command: sele#4/A:381arg > sele#4/A:381 Unknown command: sele#4/A:381 > sel#4/A:381 Unknown command: sel#4/A:381 > select #4/A:381 24 atoms, 23 bonds, 1 residue, 1 model selected > interfaces select & ~solvent Missing or invalid ""atoms"" argument: invalid atoms specifier > select #4/A:381, 391, 395, 399, 402, 409 130 atoms, 124 bonds, 6 residues, 1 model selected > select clear > select #4/A:415 14 atoms, 14 bonds, 1 residue, 1 model selected > select up 772 atoms, 784 bonds, 55 residues, 1 model selected > select clear > select #4/A:415 14 atoms, 14 bonds, 1 residue, 1 model selected > select add #4 20948 atoms, 21140 bonds, 35 pseudobonds, 1376 residues, 3 models selected > show sel cartoons > hide sel atoms > select clear > select #4/A:381, 391, 395, 399, 402, 409 130 atoms, 124 bonds, 6 residues, 1 model selected > show (sel-residues & sidechain) target ab > interfaces select & ~solvent Missing or invalid ""atoms"" argument: invalid atoms specifier > select #4/B:438, 441 34 atoms, 32 bonds, 2 residues, 1 model selected > show (sel-residues & sidechain) target ab > interfaces select & ~solvent Missing or invalid ""atoms"" argument: invalid atoms specifier > ui tool show Contacts > contacts sel ignoreHiddenModels true color #005493 48 contacts > contacts sel ignoreHiddenModels true color #005493 48 contacts > ui tool show Contacts > ui tool show Distances > select #4/A:381 24 atoms, 23 bonds, 1 residue, 1 model selected Exactly two atoms must be selected! > select #4/B:438 12 atoms, 11 bonds, 1 residue, 1 model selected > select #4/A:381 24 atoms, 23 bonds, 1 residue, 1 model selected > select #4/B:438@OD1 1 atom, 1 residue, 1 model selected > select clear Exactly two atoms must be selected! > select #4/B:438@OD2 1 atom, 1 residue, 1 model selected > select add #4/A:381@HH21 2 atoms, 2 residues, 1 model selected > distance #4/B:438@OD2 #4/A:381@HH21 Distance between ranked_0.pdb #4/B ASP 438 OD2 and /A ARG 381 HH21: 1.970Å > select clear > select #4/A:381 24 atoms, 23 bonds, 1 residue, 1 model selected > ui tool show Contacts > contacts sel select true makePseudobonds false 39 contacts > ui tool show Contacts > hide #7.1 models > show #7.1 models > ui tool show Contacts > contacts sel ignoreHiddenModels true color #005493 43 contacts > select #4/B:438@OD1 1 atom, 1 residue, 1 model selected > select #4/A:381@HH21 1 atom, 1 residue, 1 model selected > select #4/B:438@OD1 1 atom, 1 residue, 1 model selected > select #4/A:381@HH21 1 atom, 1 residue, 1 model selected Exactly two atoms must be selected! > select #4/A:381@HH21 1 atom, 1 residue, 1 model selected > select #4/B:438@OD1 1 atom, 1 residue, 1 model selected > select #4/A:381@HH21 1 atom, 1 residue, 1 model selected > hide #5 models > ui mousemode right distance > distance #4/B:438@OD1 #4/A:381@HH21 Distance between ranked_0.pdb #4/B ASP 438 OD1 and /A ARG 381 HH21: 1.923Å > ui mousemode right label > label #4/B:400 > ui mousemode right ""move label"" > ui mousemode right label > label #4/B:438 > ui mousemode right ""move label"" > ui mousemode right label > label #4/A:381 > ui mousemode right ""move label"" > select clear > select #4/A:381 24 atoms, 23 bonds, 1 residue, 1 model selected > interfaces select & ~solvent Missing or invalid ""atoms"" argument: invalid atoms specifier > distance style color #212121 > hbonds sel reveal true 5 hydrogen bonds found > contacts sel intraModel false intraMol false color #005493 8 contacts > hide #!7 models > contacts sel intraModel false intraMol false select true color #005493 > reveal true 8 contacts > contacts sel intraModel false intraMol false select true color #005493 > reveal true 133 contacts > contacts sel intraModel false intraMol false color #005493 488 contacts > contacts sel intraModel false intraMol false color #005493 488 contacts Restriction atom specifier must not be blank > select #4/A:381 24 atoms, 23 bonds, 1 residue, 1 model selected Restriction atom specifier must not be blank > select clear > hide #7.1 models > show #7.1 models > hide #7.1 models > hide #6 models > show #6 models > hide #6 models > select #4/A:381 24 atoms, 23 bonds, 1 residue, 1 model selected > select #4/A:381, sel #4/B:438 36 atoms, 34 bonds, 4 pseudobonds, 2 residues, 3 models selected Restriction atom specifier must not be blank > ui tool show Contacts > contacts sel restrict both select true makePseudobonds false 7 contacts > show #6 models Restriction atom specifier must not be blank > contacts sel restrict both interModel false intraModel false intraMol false > color #005493 No contacts > lighting soft > lighting simple > lighting full > lighting soft > ui tool show ""Selection Inspector"" > ui mousemode right pivot > ui mousemode right clip > ui mousemode right zone > ui mousemode right ""contour level"" > view sel > hide #6 models > ui tool show ""Show Sequence Viewer"" > sequence chain #4/A Alignment identifier is 4/A > sequence chain #4/B Alignment identifier is 4/B > select #4/B:436 11 atoms, 10 bonds, 1 residue, 1 model selected > select #4/B:436 11 atoms, 10 bonds, 1 residue, 1 model selected > select #4/A:381, sel #4/B:438, 436 47 atoms, 44 bonds, 5 pseudobonds, 3 residues, 3 models selected > show (#!4 & sel-residues & sidechain) target ab > ui mousemode right distance > show #6 models > ui mousemode right distance > select clear > ui mousemode right distance > select #4/A:381@HH11 1 atom, 1 residue, 1 model selected > select #4/B:436 11 atoms, 10 bonds, 1 residue, 1 model selected > ui mousemode right distance > select clear > select #4/A:381@HH11 1 atom, 1 residue, 1 model selected > select #4/B:436 11 atoms, 10 bonds, 1 residue, 1 model selected > ui mousemode right distance > select #4/A:381@HH11 1 atom, 1 residue, 1 model selected > select #4/B:436 11 atoms, 10 bonds, 1 residue, 1 model selected > ui mousemode right distance > color #6 #424242ff models > hide #!7 models > ui mousemode right distance > distance #4/A:381@HH11 #4/A:381@HH21 Distance between ranked_0.pdb #4/A ARG 381 HH11 and HH21: 3.334Å > ui mousemode right distance > distance #4/A:381@HH21 #4/B:438@OD2 Distance already exists; modify distance properties with 'distance style' > show #!7 models > hide #6 models > ui tool show Distances > show #7.1 models > ~distance #4/A:381@HH11 #4/A:381@HH21 > color sel byhetero > style sel stick Changed 11 atom styles > lighting simple Exactly two atoms must be selected! > select #4/A:381@HH22 1 atom, 1 residue, 1 model selected > select #4/B:436 11 atoms, 10 bonds, 1 residue, 1 model selected > select #4/A:381@HH22 1 atom, 1 residue, 1 model selected > select #4/B:436 11 atoms, 10 bonds, 1 residue, 1 model selected > select #4/A:381@HH22 1 atom, 1 residue, 1 model selected > select add #4/B:436 12 atoms, 10 bonds, 2 residues, 1 model selected Exactly two atoms must be selected! > select clear > ui mousemode right distance > distance #4/A:381@HH11 #4/A:381@HH22 Distance between ranked_0.pdb #4/A ARG 381 HH11 and HH22: 2.196Å > ui mousemode right distance > distance #4/A:381@HH22 #4/B:436@CA Distance between ranked_0.pdb #4/A ARG 381 HH22 and /B SER 436 CA: 5.389Å > ~distance #4/B:438@OD1 #4/A:381@HH21 > ~distance #4/A:381@HH11 #4/A:381@HH22 > show #6 models > ui mousemode right distance > ~distance #4/A:381@HH22 #4/B:436@CA > ui mousemode right label > label #4/B:436 > ui mousemode right label > label delete residues > ui mousemode right label > label #4/B:438 > label #4/A:381 > label #4/B:436 > ui mousemode right ""move label"" > view > select #4/A:381, sel #4/B:438, 436 47 atoms, 44 bonds, 4 pseudobonds, 3 residues, 3 models selected > view sel > lighting soft > ui mousemode right ""move label"" > select clear > lighting soft > lighting full > lighting soft > graphics silhouettes true > lighting flat > lighting shadows true intensity 0.5 > graphics silhouettes false > lighting flat > lighting full > graphics silhouettes false > lighting soft > graphics silhouettes true > hide #!7 models > view > select #4/A:381, sel #4/B:438, 436 47 atoms, 44 bonds, 4 pseudobonds, 3 residues, 3 models selected > view sel > ui tool show ""Side View"" > view sel > view orient > view > view sel > lighting shadows true intensity 0.5 > lighting shadows false > graphics silhouettes false > lighting full > graphics silhouettes true > lighting soft > graphics silhouettes false > graphics silhouettes true > view sel > lighting soft > lighting flat > graphics silhouettes false > lighting soft > graphics silhouettes true > view sel > hide (#!4 & sel) target a > hide #* target a > show (#!4 & sel) target ab > lighting soft > view sel > graphics silhouettes false > lighting soft > graphics silhouettes true > lighting flat > graphics silhouettes false > lighting soft > graphics silhouettes true > select clear > ui mousemode right ""move label"" > save /Users/nageshpeddada/Desktop/image22.png supersample 3 > save /Users/nageshpeddada/Downloads/cryo-em-data- > analysis/011624_IRF4_15min_analysis/model_building/cryosparc_model_building/alphafold_MIDN_F.L_Psmd2_F.L/overlay_cryoem_str4.cxs > select #4/A:381, 391, 395, 398, 402, 409 130 atoms, 124 bonds, 6 residues, 1 model selected > hide #* target a > show sel target ab > select #4/B:468, 464, 465, 457, 423, 458, 459, 315, 316 120 atoms, 115 bonds, 9 residues, 1 model selected > hide #* target a > show sel target ab > select #4/B:468, 464, 465, 457, 423, 458, 459, 315, 316, sel #4/A:381, 391, > 395, 398, 402, 409 250 atoms, 239 bonds, 15 residues, 1 model selected > show (sel-residues & sidechain) target ab > view sel > select clear > select #4/A:241 11 atoms, 10 bonds, 1 residue, 1 model selected > select up 1505 atoms, 1528 bonds, 112 residues, 1 model selected > select up 6897 atoms, 6971 bonds, 468 residues, 1 model selected > select down 1505 atoms, 1528 bonds, 112 residues, 1 model selected > delete atoms sel > delete bonds sel > select #4/A:448 20 atoms, 20 bonds, 1 residue, 1 model selected > select up 772 atoms, 784 bonds, 55 residues, 1 model selected > delete atoms sel > delete bonds sel > select clear > select #4/A:374 22 atoms, 21 bonds, 1 residue, 1 model selected > select up 672 atoms, 678 bonds, 46 residues, 1 model selected > select up 2298 atoms, 2317 bonds, 147 residues, 1 model selected > select down 672 atoms, 678 bonds, 46 residues, 1 model selected > delete atoms sel > delete bonds sel > select clear > select #4/A:329 17 atoms, 16 bonds, 1 residue, 1 model selected > select up 57 atoms, 56 bonds, 4 residues, 1 model selected > select up 940 atoms, 951 bonds, 63 residues, 1 model selected > select up 3948 atoms, 3976 bonds, 255 residues, 1 model selected > select down 940 atoms, 951 bonds, 63 residues, 1 model selected > delete atoms sel > delete bonds sel > select #4/A:154 19 atoms, 18 bonds, 1 residue, 1 model selected > select up 123 atoms, 124 bonds, 7 residues, 1 model selected > select up 2322 atoms, 2339 bonds, 154 residues, 1 model selected > delete atoms sel > delete bonds sel > save /Users/nageshpeddada/Downloads/cryo-em-data- > analysis/011624_IRF4_15min_analysis/model_building/cryosparc_model_building/alphafold_MIDN_F.L_Psmd2_F.L/overlay_cryoem_str5.cxs > hide #6 models > select #4/B:468, 464, 465, 457, 423, 458, 459, 315, 316, sel #4/A:381, 391, > 395, 398, 402, 409 250 atoms, 239 bonds, 15 residues, 1 model selected > ui tool show Contacts > contacts sel restrict both interModel false intraModel false intraMol false > color #797979 No contacts > contacts sel restrict both intraModel false intraMol false color #797979 No contacts Restriction atom specifier must not be blank > contacts sel intraModel false intraMol false color #797979 1191 contacts > select #4/A:381, 391, 395, 398, 402, 409 130 atoms, 124 bonds, 6 residues, 1 model selected > ui tool show Contacts > contacts sel intraModel false intraMol false color #797979 678 contacts > hide #5 models > show #5 models > ui tool show Contacts > contacts sel intraModel false intraMol false color #797979 678 contacts > contacts sel intraModel false intraMol false color #797979 678 contacts > select clear > hide #7.1 models > hide #5 models > ui mousemode right label > label #4/A:391 > label #4/A:395 > label #4/A:398 > label #4/A:402 > label #4/A:409 > ui mousemode right ""move label"" > lighting shadows true intensity 0.5 > lighting soft > graphics silhouettes false > lighting soft > graphics silhouettes true > lighting flat > save /Users/nageshpeddada/Desktop/image23.png supersample 3 > select #4/B:468, 464, sel #4/A:391 44 atoms, 41 bonds, 3 residues, 1 model selected > view sel > ui tool show H-Bonds > hbonds sel color #424242 showDist true restrict cross reveal true 5 hydrogen bonds found > show #!6 models > hbonds sel color #424242 showDist true restrict cross intraModel false > saltOnly true reveal true 0 hydrogen bonds found > hbonds sel color #424242 showDist true restrict cross intraModel false > saltOnly true reveal true 0 hydrogen bonds found The cached device pixel ratio value was stale on window expose. Please file a QTBUG which explains how to reproduce. > hbonds sel color #424242 showDist true restrict both intraModel false > saltOnly true reveal true 0 hydrogen bonds found > hbonds sel color #424242 showDist true restrict cross intraModel false > saltOnly true reveal true 0 hydrogen bonds found > ui tool show Contacts The cached device pixel ratio value was stale on window expose. Please file a QTBUG which explains how to reproduce. > contacts sel restrict cross intraModel false intraMol false color #797979 166 contacts > show #5 models > hide #6 models > select subtract #6 44 atoms, 41 bonds, 3 residues, 1 model selected > contacts sel restrict cross intraModel false intraMol false color #797979 166 contacts > contacts sel restrict cross intraModel false intraMol false select true > color #797979 reveal true 166 contacts > contacts sel restrict cross intraModel false intraMol false select true > color #797979 name contacts2 reveal true 637 contacts > hide #8 models > show #8 models > hide #8 models > show #8 models > hide #8 models > contacts sel restrict cross intraModel false intraMol false color #797979 > name contacts2 1252 contacts > close #8 > contacts sel restrict both intraModel false intraMol false color #797979 > name contacts2 637 contacts > hide #* target a > show (#!4 & sel) target ab > show (#!4 & sel-residues & sidechain) target ab > select clear > select #4/B:468, 464, sel #4/A:391 44 atoms, 41 bonds, 3 residues, 1 model selected > hide #* target a > show sel target ab > ui tool show Contacts > contacts sel restrict both intraModel false intraMol false color #797979 No contacts > contacts sel restrict both intraModel false intraMol false color #797979 > name contacts2 No contacts > ui tool show H-Bonds > hbonds sel color #424242 showDist true restrict cross intraModel false > saltOnly true reveal true 0 hydrogen bonds found > hbonds sel color #424242 showDist true restrict cross intraModel false > saltOnly true reveal true 0 hydrogen bonds found > select clear > ui tool show Distances > ui tool show Contacts > contacts sel restrict cross intraModel false intraMol false color #797979 > name contacts2 No atoms match given atom specifier Exactly two atoms must be selected! > select #4/A:391 22 atoms, 21 bonds, 1 residue, 1 model selected > ui tool show Contacts > contacts sel restrict cross intraModel false intraMol false color #797979 > name contacts3 110 contacts > contacts sel restrict cross intraModel false intraMol false color #797979 > name contacts3 110 contacts > contacts sel restrict cross intraModel false intraMol false color #797979 > name contacts3 110 contacts > contacts sel restrict cross intraModel false intraMol false color #797979 > name contacts3 110 contacts > contacts sel restrict cross select true makePseudobonds false 143 contacts > ui tool show Contacts > contacts sel restrict cross intraModel false intraMol false color #797979 408 contacts > hide #9 models > show #9 models > select add #9 64 atoms, 110 pseudobonds, 16 residues, 5 models selected > hide #* target a > show (#!4 & sel) target ab > show (#!4 & sel-residues & sidechain) target ab > hide #9 models > show #9 models > contacts sel restrict cross intraModel false intraMol false color #212121 408 contacts > select clear > ui mousemode right label > label #4/A:389 > ui mousemode right ""move label"" > ui mousemode right label > label #4/B:468 > ui mousemode right label > label #4/B:464 > ui mousemode right distance > distance #4/B:468@OD2 #4/A:391@HZ3 Distance between ranked_0.pdb #4/B ASP 468 OD2 and /A LYS 391 HZ3: 1.745Å > distance #4/B:468@OD2 #4/A:391@HZ3 Distance already exists; modify distance properties with 'distance style' > show #!7 models > color #7 black models > distance #4/B:468@OD1 #4/A:391@HZ1 Distance between ranked_0.pdb #4/B ASP 468 OD1 and /A LYS 391 HZ1: 2.357Å > ui mousemode right distance > select clear > color #7 #212121ff models > distance #4/A:391@HZ1 #4/A:391@HE3 Distance between ranked_0.pdb #4/A LYS 391 HZ1 and HE3: 2.503Å > ~distance #4/A:391@HZ1 #4/A:391@HE3 > distance #4/A:391@HE3 #4/A:391@CE Distance between ranked_0.pdb #4/A LYS 391 HE3 and CE: 1.090Å > ui mousemode right distance > distance #4/A:391@HE3 #4/A:391@HE2 Distance between ranked_0.pdb #4/A LYS 391 HE3 and HE2: 1.781Å > ui mousemode right distance > ~distance #4/A:391@HE3 #4/A:391@HE2 > ui mousemode right distance > distance #4/A:391@HE3 #4/A:391@CE Distance already exists; modify distance properties with 'distance style' > distance #4/B:464@CB #4/A:391@HD3 Distance between ranked_0.pdb #4/B ALA 464 CB and /A LYS 391 HD3: 4.843Å > color #7 black models > ui mousemode right ""move label"" > save /Users/nageshpeddada/Desktop/image24.png supersample 3 > hide #9 models > show #9 models > hide #9 models > hide #8 models > show #8 models > hide #8 models ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.8.dev202404300104 (2024-04-30) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 ATI-4.8.101 OpenGL renderer: AMD Radeon R9 M380 OpenGL Engine OpenGL vendor: ATI Technologies Inc. Python: 3.11.4 Locale: UTF-8 Qt version: PyQt6 6.6.1, Qt 6.6.1 Qt runtime version: 6.6.3 Qt platform: cocoa Hardware: Hardware Overview: Model Name: iMac Model Identifier: iMac17,1 Processor Name: Quad-Core Intel Core i5 Processor Speed: 3.2 GHz Number of Processors: 1 Total Number of Cores: 4 L2 Cache (per Core): 256 KB L3 Cache: 6 MB Memory: 16 GB System Firmware Version: 526.0.0.0.0 OS Loader Version: 540.120.3~37 SMC Version (system): 2.33f12 Software: System Software Overview: System Version: macOS 12.7.4 (21H1123) Kernel Version: Darwin 21.6.0 Time since boot: 3 days 23:13 Graphics/Displays: AMD Radeon R9 M380: Chipset Model: AMD Radeon R9 M380 Type: GPU Bus: PCIe PCIe Lane Width: x16 VRAM (Total): 2 GB Vendor: AMD (0x1002) Device ID: 0x6640 Revision ID: 0x0080 ROM Revision: 113-C6005R-800 VBIOS Version: 113-C6005T-009 EFI Driver Version: 01.00.800 Metal Family: Supported, Metal GPUFamily macOS 2 Displays: iMac: Display Type: Built-In Retina LCD Resolution: Retina 5K (5120 x 2880) Framebuffer Depth: 30-Bit Color (ARGB2101010) Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal DELL U2412M: Resolution: 1920 x 1200 (WUXGA - Widescreen Ultra eXtended Graphics Array) UI Looks like: 1920 x 1200 Framebuffer Depth: 30-Bit Color (ARGB2101010) Display Serial Number: YMYH137E1E4S Mirror: Off Online: Yes Rotation: Supported Connection Type: Thunderbolt/DisplayPort Installed Packages: alabaster: 0.7.16 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 2.4.1 Babel: 2.14.0 beautifulsoup4: 4.12.3 blockdiag: 3.0.0 blosc2: 2.0.0 build: 1.2.1 certifi: 2023.11.17 cftime: 1.6.3 charset-normalizer: 3.3.2 ChimeraX-AddCharge: 1.5.17 ChimeraX-AddH: 2.2.6 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.5 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.12.5 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.1.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.57 ChimeraX-AtomicLibrary: 14.0.3 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.4.4 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.12.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.3 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.4 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.4 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.5 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.8.dev202404300104 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.3 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2 ChimeraX-DiffPlot: 1.0 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.3 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-Label: 1.1.9 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.1.6 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.2 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.1.3 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.7 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.14.1 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.15 ChimeraX-ModelPanel: 1.5 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.1 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.1 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.13.4 ChimeraX-PDB: 2.7.5 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.1 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.4.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.2 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.2 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 1.0.3 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.11.2 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.16.3 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.38 ChimeraX-uniprot: 2.3 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.4.1 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.3 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.2 contourpy: 1.2.1 cxservices: 1.2.2 cycler: 0.12.1 Cython: 3.0.10 debugpy: 1.8.1 decorator: 5.1.1 docutils: 0.20.1 executing: 2.0.1 filelock: 3.13.4 fonttools: 4.51.0 funcparserlib: 2.0.0a0 glfw: 2.7.0 grako: 3.16.5 h5py: 3.11.0 html2text: 2024.2.26 idna: 3.7 ihm: 1.0 imagecodecs: 2024.1.1 imagesize: 1.4.1 ipykernel: 6.29.2 ipython: 8.21.0 ipywidgets: 8.1.2 jedi: 0.19.1 Jinja2: 3.1.3 jupyter-client: 8.6.0 jupyter-core: 5.7.2 jupyterlab-widgets: 3.0.10 kiwisolver: 1.4.5 line-profiler: 4.1.2 lxml: 5.2.1 lz4: 4.3.3 MarkupSafe: 2.1.5 matplotlib: 3.8.4 matplotlib-inline: 0.1.7 msgpack: 1.0.8 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.10.0 numpy: 1.26.4 openvr: 1.26.701 packaging: 23.2 ParmEd: 4.2.2 parso: 0.8.4 pep517: 0.13.1 pexpect: 4.9.0 pillow: 10.3.0 pip: 24.0 pkginfo: 1.10.0 platformdirs: 4.2.1 prompt-toolkit: 3.0.43 psutil: 5.9.8 ptyprocess: 0.7.0 pure-eval: 0.2.2 py-cpuinfo: 9.0.0 pycollada: 0.8 pydicom: 2.4.4 pygments: 2.17.2 pynmrstar: 3.3.4 pynrrd: 1.0.0 PyOpenGL: 3.1.7 PyOpenGL-accelerate: 3.1.7 pyopenxr: 1.0.3401 pyparsing: 3.1.2 pyproject-hooks: 1.1.0 PyQt6-commercial: 6.6.1 PyQt6-Qt6: 6.6.3 PyQt6-sip: 13.6.0 PyQt6-WebEngine-commercial: 6.6.0 PyQt6-WebEngine-Qt6: 6.6.3 python-dateutil: 2.9.0.post0 pytz: 2024.1 pyzmq: 26.0.2 qtconsole: 5.5.1 QtPy: 2.4.1 RandomWords: 0.4.0 requests: 2.31.0 scipy: 1.13.0 setuptools: 69.5.1 setuptools-scm: 8.0.4 sfftk-rw: 0.8.1 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.5 sphinx: 7.2.6 sphinx-autodoc-typehints: 2.0.1 sphinxcontrib-applehelp: 1.0.8 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.6 sphinxcontrib-htmlhelp: 2.0.5 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.7 sphinxcontrib-serializinghtml: 1.1.10 stack-data: 0.6.3 superqt: 0.6.3 tables: 3.8.0 tcia-utils: 1.5.1 tifffile: 2024.1.30 tinyarray: 1.2.4 tornado: 6.4 traitlets: 5.14.2 typing-extensions: 4.11.0 tzdata: 2024.1 urllib3: 2.2.1 wcwidth: 0.2.13 webcolors: 1.13 wheel: 0.43.0 wheel-filename: 1.4.1 widgetsnbextension: 4.0.10 }}} " defect closed normal Window Toolkit can't reproduce Eric Pettersen all ChimeraX