ChimeraX bug report submission

[um18fa@…]

The following bug report has been submitted:
Platform:        macOS-13.3-arm64-arm-64bit
ChimeraX Version: 1.8 (2024-06-10 23:15:52 UTC)
Description
RNA structure not fitting within the 3D model with error


Log:
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 1.8 (2024-06-10)  
© 2016-2024 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open
> /Volumes/astbury/Users/um18fa/240607_RNA_MSI2_1/Class3D/job006/run_it025_class001.mrc

Opened run_it025_class001.mrc as #1, grid size 128,128,128, pixel 2.92, shown
at level 0.00301, step 1, values float32  

> open
> /Volumes/astbury/Users/um18fa/240607_RNA_MSI2_1/Class3D/job006/run_it025_class002.mrc

Opened run_it025_class002.mrc as #2, grid size 128,128,128, pixel 2.92, shown
at level 0.0248, step 1, values float32  

> tile

2 models tiled  

> surface dust #1 size 29.2

> surface dust #2 size 29.2

> volume #1 level 0.006823

> tile

2 models tiled  

> set bgColor white

> tile

2 models tiled  

> open
> /Users/francescappadoo/Downloads/cryosparc_P12_J2741_004_volume_map_sharp.mrc

Opened cryosparc_P12_J2741_004_volume_map_sharp.mrc as #3, grid size
128,128,128, pixel 2.92, shown at level 0.0695, step 1, values float32  

> tile

3 models tiled  

> surface dust #1 size 29.2

> surface dust #2 size 29.2

> surface dust #3 size 29.2

> volume #3 level 0.2305

> tile

3 models tiled  

> open
> /Volumes/astbury/Users/um18fa/240607_RNA_MSI2_1/Class3D/job008/run_it002_class006.mrc

Opened run_it002_class006.mrc as #4, grid size 128,128,128, pixel 2.92, shown
at level 0.00432, step 1, values float32  

> open
> /Volumes/astbury/Users/um18fa/240607_RNA_MSI2_1/Class3D/job008/run_it002_class005.mrc

Opened run_it002_class005.mrc as #5, grid size 128,128,128, pixel 2.92, shown
at level 0.00434, step 1, values float32  

> open
> /Volumes/astbury/Users/um18fa/240607_RNA_MSI2_1/Class3D/job008/run_it002_class004.mrc

Opened run_it002_class004.mrc as #6, grid size 128,128,128, pixel 2.92, shown
at level 0.0002, step 1, values float32  

> open
> /Volumes/astbury/Users/um18fa/240607_RNA_MSI2_1/Class3D/job008/run_it002_class001.mrc

Opened run_it002_class001.mrc as #7, grid size 128,128,128, pixel 2.92, shown
at level 0.00436, step 1, values float32  

> open
> /Volumes/astbury/Users/um18fa/240607_RNA_MSI2_1/Class3D/job008/run_it002_class002.mrc

Opened run_it002_class002.mrc as #8, grid size 128,128,128, pixel 2.92, shown
at level 0.00434, step 1, values float32  

> open
> /Volumes/astbury/Users/um18fa/240607_RNA_MSI2_1/Class3D/job008/run_it002_class003.mrc

Opened run_it002_class003.mrc as #9, grid size 128,128,128, pixel 2.92, shown
at level 0.00433, step 1, values float32  

> hide #!1 models

> hide #!2 models

> hide #!3 models

> tile

5 models tiled  

> surface dust #4 size 29.2

> surface dust #5 size 29.2

> surface dust #6 size 29.2

> surface dust #7 size 29.2

> surface dust #8 size 29.2

> surface dust #9 size 29.2

> tile

6 models tiled  

> volume #4 level 0.1

> volume #4 level 0.002558

> volume #3 level 0.1794

> tile

6 models tiled  

> volume #4 level 0.008048

> tile

6 models tiled  

> select add #4

2 models selected  

> ui mousemode right "rotate selected models"

> view matrix models
> #4,-0.037521,-0.097135,-0.99456,712.31,0.10616,-0.99002,0.092686,-96.935,-0.99364,-0.10211,0.047458,381.13

> select subtract #4

Nothing selected  

> select add #5

2 models selected  

> view matrix models
> #5,-0.94795,-0.092382,-0.30472,1057,0.063043,-0.9925,0.10477,-55.729,-0.31211,0.080109,0.94666,43.382

> view matrix models
> #5,0.092403,-0.052419,-0.99434,975.2,0.13595,-0.9886,0.06475,-63.25,-0.9864,-0.14116,-0.084223,414.91

> tile

6 models tiled  

> select subtract #5

Nothing selected  

> volume #5 level 0.007077

> tile

6 models tiled  

> select add #6

2 models selected  

> select subtract #6

Nothing selected  

> close #6

> select add #7

2 models selected  

> view matrix models
> #7,-0.91072,0.2585,-0.32214,330.01,-0.27052,-0.96268,-0.0077252,-320.96,-0.31211,0.080109,0.94666,43.208

> view matrix models
> #7,-0.9156,0.2405,-0.32223,335.14,-0.25348,-0.96734,-0.0017141,-324.27,-0.31211,0.080109,0.94666,43.208

> view matrix models
> #7,-0.16419,0.046176,-0.98535,358.55,-0.21191,-0.97723,-0.010485,-328.33,-0.9634,0.20709,0.17023,282.49

> volume #7 level 0.00708

> volume #8 level 0.00708

> select subtract #7

Nothing selected  

> select add #8

2 models selected  

> view matrix models
> #8,-0.014468,-0.081304,-0.99658,717.39,-0.026281,-0.99631,0.081663,-361.3,-0.99955,0.027373,0.012278,384.49

> select subtract #8

Nothing selected  

> select add #9

2 models selected  

> view matrix models
> #9,-0.92176,0.21581,-0.32217,1031.2,-0.2301,-0.97314,0.0064844,-334.64,-0.31211,0.080109,0.94666,43.659

> view matrix models
> #9,-0.043425,-0.0010768,-0.99906,1037.5,-0.2004,-0.97967,0.0097663,-339.45,-0.97875,0.20063,0.042326,310.68

> volume #9 level 0.00708

> select subtract #9

Nothing selected  

> close #8

> close

> open /Users/francescappadoo/CHIKV_apoSHAPE/test1_CHIKV_337.map

Failed opening file /Users/francescappadoo/CHIKV_apoSHAPE/test1_CHIKV_337.map:  
MRC header value nsymbt (774976816) is invalid  

> open
> /Users/francescappadoo/Downloads/cryosparc_P12_J2761_class_02_00800_volume.mrc

Opened cryosparc_P12_J2761_class_02_00800_volume.mrc as #1, grid size
64,64,64, pixel 5.92, shown at level 0.414, step 1, values float32  

> surface dust #1 size 59.2

> volume #1 level 1

> ui tool show "Scale Bar"

> scalebar

> scalebar 50

> save /Users/francescappadoo/Desktop/image19.png supersample 3

> volume #1 level 1.091

> open "/Users/francescappadoo/Downloads/cryosparc_P12_J2701_005_volume_map
> (1).mrc" format mrc

Opened cryosparc_P12_J2701_005_volume_map (1).mrc as #3, grid size
128,128,128, pixel 2.92, shown at level 0.00523, step 1, values float32  

> tile

3 models tiled  

> surface dust #1 size 59.2

> surface dust #3 size 29.2

> volume #3 level 0.2201

> tile

3 models tiled  

> close #3

> open
> /Users/francescappadoo/Downloads/cryosparc_P12_J2741_004_volume_map_sharp.mrc

Opened cryosparc_P12_J2741_004_volume_map_sharp.mrc as #3, grid size
128,128,128, pixel 2.92, shown at level 0.0695, step 1, values float32  

> tile

3 models tiled  

> surface dust #1 size 59.2

> surface dust #3 size 29.2

> volume #3 level 0.2754

> tile

3 models tiled  

> select add #1

2 models selected  

> view matrix models
> #1,-0.12624,-0.51981,-0.8449,470.31,0.45438,0.72681,-0.51505,64.512,0.88182,-0.44893,0.14444,82.424

> select subtract #1

Nothing selected  

> volume #1 level 1.243

> select add #1

2 models selected  

> view matrix models
> #1,0.11017,-0.73417,-0.66997,434.46,0.25557,0.67233,-0.69473,145.65,0.96049,-0.094684,0.2617,-21.937

> select subtract #1

Nothing selected  

> select add #3

2 models selected  

> view matrix models
> #3,-0.46448,-0.22699,-0.856,452.31,0.42557,-0.90488,0.0090332,190.9,-0.77663,-0.3601,0.5169,215.82

> hide #!1 models

> close #1

> select subtract #3

Nothing selected  

> hide #!3 models

> open
> /Users/francescappadoo/Downloads/cryosparc_P12_J2761_class_00_final_volume.mrc

Opened cryosparc_P12_J2761_class_00_final_volume.mrc as #1, grid size
128,128,128, pixel 2.96, shown at level 0.147, step 1, values float32  

> open
> /Users/francescappadoo/Downloads/cryosparc_P12_J2761_class_05_final_volume.mrc

Opened cryosparc_P12_J2761_class_05_final_volume.mrc as #4, grid size
128,128,128, pixel 2.96, shown at level 0.13, step 1, values float32  

> open
> /Users/francescappadoo/Downloads/cryosparc_P12_J2761_class_04_final_volume.mrc

Opened cryosparc_P12_J2761_class_04_final_volume.mrc as #5, grid size
128,128,128, pixel 2.96, shown at level 0.121, step 1, values float32  

> open
> /Users/francescappadoo/Downloads/cryosparc_P12_J2761_class_03_final_volume.mrc

Opened cryosparc_P12_J2761_class_03_final_volume.mrc as #6, grid size
128,128,128, pixel 2.96, shown at level 0.117, step 1, values float32  

> open
> /Users/francescappadoo/Downloads/cryosparc_P12_J2761_class_02_final_volume.mrc

Opened cryosparc_P12_J2761_class_02_final_volume.mrc as #7, grid size
128,128,128, pixel 2.96, shown at level 0.113, step 1, values float32  

> open
> /Users/francescappadoo/Downloads/cryosparc_P12_J2761_class_01_final_volume.mrc

Opened cryosparc_P12_J2761_class_01_final_volume.mrc as #8, grid size
128,128,128, pixel 2.96, shown at level 0.12, step 1, values float32  

> tile

7 models tiled  

> surface dust #1 size 29.6

> surface dust #4 size 29.6

> surface dust #5 size 29.6

> surface dust #6 size 29.6

> surface dust #7 size 29.6

> surface dust #8 size 29.6

> show #!3 models

> hide #!3 models

> volume #1 level 1

> volume #4 level 1

> tile

7 models tiled  

> volume #1 level 0.5

> volume #4 level 0.5

> volume #5 level 0.5

> volume #6 level 0.5

> volume #7 level 0.5

> volume #8 level 0.5

> tile

7 models tiled  

> tile

7 models tiled  

> tile

7 models tiled  

> tile

7 models tiled  

> tile

7 models tiled  

> hide #!1 models

> hide #!8 models

> hide #!6 models

> hide #!5 models

> hide #!4 models

> tile

2 models tiled  

> scalebar off

> scalebar 50

> volume #7 color silver

> movie record

> turn y 2 180

> wait 180

> movie encode /Users/francescappadoo/Desktop/movie6.mp4

Movie saved to /Users/francescappadoo/Desktop/movie6.mp4  
  

> open /Users/francescappadoo/Downloads/cryosparc_P12_J2768_004_volume_map.mrc

Opened cryosparc_P12_J2768_004_volume_map.mrc as #10, grid size 128,128,128,
pixel 2.96, shown at level 0.0253, step 1, values float32  

> tile

3 models tiled  

> surface dust #7 size 29.6

> surface dust #10 size 29.6

> hide #!9 models

> show #!9 models

> hide #!10 models

> show #!10 models

> hide #!7 models

> tile

2 models tiled  

> surface dust #10 size 29.6

> volume #10 level 0.4142

> tile

2 models tiled  

> tile

2 models tiled  

> open
> /Users/francescappadoo/Downloads/rnacomposer-2024-07-03-103043/Kendall_Fran_SHAPE_MaP.pdb

Chain information for Kendall_Fran_SHAPE_MaP.pdb #11  
---  
Chain | Description  
A | No description available  
  

> tile

3 models tiled  

> select add #10

2 models selected  

> view matrix models
> #10,0.67809,-0.17616,-0.71356,987.33,-0.066781,0.95207,-0.29851,279.27,0.73194,0.25007,0.63382,-457.13

> view matrix models
> #10,0.23493,-0.97138,0.034938,1072.8,-0.95966,-0.23751,-0.15046,643.52,0.15445,0.0018186,-0.988,20.963

> view matrix models
> #10,-0.48445,-0.76934,0.41643,1096.1,0.8724,-0.38953,0.29526,235.17,-0.06494,0.50634,0.85989,-398.53

> fitmap #11 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#11) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0, steps = 24  
shifted from previous position = 0  
rotated from previous position = 0 degrees  
atoms outside contour = 10778, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#11) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.23506652 0.08984099 -0.96781833 175.87204389  
0.95697267 0.19568578 -0.21426709 424.41690107  
0.17013831 -0.97654272 -0.13197455 -72.42220883  
Axis -0.47022466 -0.70197086 0.53490717  
Axis point -109.52048406 0.00000000 117.72922446  
Rotation angle (degrees) 125.85087667  
Shift along axis -419.36682757  
  

> transparency sel 50

> view matrix models
> #10,-0.49161,-0.77029,0.40618,1099.6,0.82449,-0.26162,0.50177,179.29,-0.28024,0.58156,0.76371,-352.65

> ui mousemode right "translate selected models"

> view matrix models
> #10,-0.49161,-0.77029,0.40618,858.51,0.82449,-0.26162,0.50177,10.893,-0.28024,0.58156,0.76371,-453.63

> fitmap #11 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#11) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.4161, steps = 100  
shifted from previous position = 14.5  
rotated from previous position = 16.6 degrees  
atoms outside contour = 8312, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#11) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.10586532 0.41122890 -0.90536364 205.95863976  
0.99296797 0.09223083 -0.07421646 226.16213244  
0.05298248 -0.90685405 -0.41810118 157.76482325  
Axis -0.59624383 -0.68626251 0.41657780  
Axis point -68.26209582 0.00000000 171.06121612  
Rotation angle (degrees) 135.71436659  
Shift along axis -212.28683912  
  

> fitmap #11 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#11) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5355, steps = 176  
shifted from previous position = 11.4  
rotated from previous position = 21.1 degrees  
atoms outside contour = 7782, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#11) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.14830951 0.54940412 -0.82228912 234.12524268  
0.92511514 0.37094826 0.08098992 221.66146353  
0.34952291 -0.74870055 -0.56327723 187.13226297  
Axis -0.55903572 -0.78955323 0.25314969  
Axis point -32.47098043 0.00000000 154.30950999  
Rotation angle (degrees) 132.09170865  
Shift along axis -258.52542322  
  

> select subtract #10

Nothing selected  

> fitmap #11 inMap #10 search 100

Found 85 unique fits from 100 random placements having fraction of points
inside contour >= 0.100 (100 of 100).  
  
Average map values and times found:  
0.5647 (1), 0.5444 (1), 0.544 (2), 0.5431 (1), 0.5307 (2), 0.5238 (2), 0.519
(2), 0.5081 (1), 0.504 (1), 0.5031 (1), 0.5029 (1), 0.4996 (1), 0.497 (1),
0.4963 (1), 0.4893 (1), 0.4868 (1), 0.4831 (1), 0.4819 (1), 0.481 (1), 0.4797
(1), 0.4797 (1), 0.4764 (1), 0.4712 (2), 0.4712 (1), 0.4693 (1), 0.4692 (2),
0.4617 (1), 0.4598 (1), 0.4585 (1), 0.4581 (3), 0.4574 (1), 0.456 (1), 0.4551
(1), 0.4524 (1), 0.4517 (1), 0.45 (1), 0.4488 (2), 0.4485 (1), 0.4484 (2),
0.4481 (1), 0.4472 (1), 0.4445 (1), 0.4444 (1), 0.4435 (2), 0.4411 (1), 0.4389
(1), 0.4313 (1), 0.4302 (1), 0.4298 (1), 0.4296 (1), 0.4295 (1), 0.4247 (1),
0.4243 (1), 0.4213 (1), 0.4188 (1), 0.4188 (1), 0.4162 (1), 0.4131 (2), 0.4125
(1), 0.4117 (1), 0.4102 (1), 0.4099 (1), 0.4027 (1), 0.4009 (1), 0.3977 (1),
0.3955 (1), 0.3931 (1), 0.3929 (1), 0.3929 (2), 0.3856 (1), 0.3846 (2), 0.3842
(1), 0.3813 (1), 0.3543 (2), 0.3509 (1), 0.3508 (1), 0.345 (1), 0.3427 (1),
0.341 (1), 0.3297 (1), 0.3065 (1), 0.2982 (1), 0.2929 (1), 0.2773 (1), 0.2568
(1)  
  
Best fit found:  
Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#11) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5647, steps = 244  
shifted from previous position = 39.1  
rotated from previous position = 36.4 degrees  
atoms outside contour = 7438, contour level = 0.41421  
Position of Kendall_Fran_SHAPE_MaP.pdb (#11) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.42316901 0.04439904 0.90496228 186.28849191  
0.68061827 -0.67486759 -0.28515344 174.19949031  
0.59806913 0.73660196 -0.31580183 231.94892009  
Axis 0.82256852 0.24706564 0.51219098  
Axis point 0.00000000 44.18726940 78.36918025  
Rotation angle (degrees) 141.60523538  
Shift along axis 315.07590191  
  
Found 85 fits.  

Populating font family aliases took 148 ms. Replace uses of missing font
family "Courier" with one that exists to avoid this cost.  

> ui tool show "Fit in Map"

Opened Kendall_Fran_SHAPE_MaP.pdb map 15 as #12, grid size 44,50,38, pixel 5,
shown at level 0.0344, step 1, values float32  
Opened Kendall_Fran_SHAPE_MaP.pdb map 15 as #13, grid size 44,50,38, pixel 5,
shown at level 0.0344, step 1, values float32  

> fitmap #11 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4821, correlation about mean = 0.2308, overlap = 224.8  
steps = 48, shift = 0.221, angle = 0.674 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.41339839 0.04036046 0.90965533 185.75840527  
0.68412919 -0.67303872 -0.28104467 174.44740525  
0.60089012 0.73850518 -0.30584488 231.81517777  
Axis 0.81911875 0.24806573 0.51721163  
Axis point 0.00000000 44.45149585 77.76607486  
Rotation angle (degrees) 141.51237645  
Shift along axis 315.33012039  
  
Average map value = 0.5642 for 10778 atoms, 7420 outside contour  

> fitmap #11 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4679, correlation about mean = 0.2177, overlap = 213.6  
steps = 52, shift = 1.45, angle = 2.33 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#12) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.65753580 0.23882220 0.71457025 205.11366464  
0.73717051 -0.00799717 -0.67565943 222.84277340  
-0.15564795 0.97103035 -0.18131108 217.02479160  
Axis 0.85408830 0.45135593 0.25847824  
Axis point 0.00000000 -1.28711772 110.04354088  
Rotation angle (degrees) 105.41961923  
Shift along axis 331.86277369  
  
Average map value = 0.5427 for 10778 atoms, 7590 outside contour  

> fitmap #11 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4598, correlation about mean = 0.1822, overlap = 214.4  
steps = 60, shift = 0.857, angle = 1.91 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#12) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.82632079 0.27913890 -0.48915790 225.24165691  
-0.54648750 0.18738571 -0.81623403 185.00230901  
-0.13618145 0.94178978 0.30738665 235.73162750  
Axis 0.89056408 -0.17880767 -0.41823849  
Axis point 0.00000000 -59.53199906 301.01946737  
Rotation angle (degrees) 80.76137705  
Shift along axis 68.92025746  
  
Average map value = 0.5426 for 10778 atoms, 7566 outside contour  

> fitmap #11 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4682, correlation about mean = 0.2215, overlap = 216.2  
steps = 48, shift = 0.901, angle = 1.84 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#12) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.67965545 -0.18686234 -0.70933133 174.32359731  
-0.70946594 -0.07820685 0.70038684 144.43435266  
-0.18635046 0.97926813 -0.07941877 209.30303203  
Axis 0.35292996 -0.66184296 -0.66136551  
Axis point 110.85843508 0.00000000 69.07653093  
Rotation angle (degrees) 156.72813938  
Shift along axis -172.49464704  
  
Average map value = 0.5407 for 10778 atoms, 7651 outside contour  

> fitmap #11 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4647, correlation about mean = 0.1901, overlap = 214.2  
steps = 84, shift = 2.71, angle = 5.69 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#12) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.46920511 -0.06557822 -0.88065093 189.25283215  
-0.55282044 0.79947599 0.23500570 200.85016590  
0.68864802 0.59710766 -0.41137119 229.59734151  
Axis 0.21520082 -0.93265006 -0.28957292  
Axis point 68.64336258 0.00000000 152.45177745  
Rotation angle (degrees) 122.72109870  
Shift along axis -213.08072801  
  
Average map value = 0.5268 for 10778 atoms, 7396 outside contour  

> fitmap #11 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4614, correlation about mean = 0.2179, overlap = 204.6  
steps = 100, shift = 3.78, angle = 9.84 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#12) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.22367034 0.09270357 0.97024618 187.24938902  
-0.66366074 -0.71455954 0.22126696 145.13813742  
0.71381089 -0.69340510 -0.09830205 204.07096161  
Axis -0.75326414 0.21118335 -0.62289223  
Axis point 0.00000000 111.42163595 -19.24204134  
Rotation angle (degrees) 142.61707962  
Shift along axis -237.51170792  
  
Average map value = 0.5187 for 10778 atoms, 7672 outside contour  

> fitmap #11 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4629, correlation about mean = 0.2173, overlap = 202.8  
steps = 64, shift = 5.56, angle = 7.69 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#12) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.59980921 0.37270396 0.70804004 208.92867119  
-0.53717555 -0.46826191 0.70155057 141.36911332  
0.59301885 -0.80113823 -0.08066036 176.44737222  
Axis -0.85358221 0.06533625 -0.51684484  
Axis point 0.00000000 93.33669203 -30.40870462  
Rotation angle (degrees) 118.33048036  
Shift along axis -260.29718333  
  
Average map value = 0.5065 for 10778 atoms, 7568 outside contour  

> fitmap #11 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4479, correlation about mean = 0.1784, overlap = 203.5  
steps = 76, shift = 0.62, angle = 2.36 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#12) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.82312182 -0.40685671 0.39615414 144.58905413  
0.44770493 -0.03580152 0.89346434 191.64848304  
-0.34932904 0.91279011 0.21162074 231.57242697  
Axis 0.01703922 0.65728059 0.75345331  
Axis point 71.21303636 23.58980597 0.00000000  
Rotation angle (degrees) 145.45198999  
Shift along axis 302.90952451  
  
Average map value = 0.5062 for 10778 atoms, 7834 outside contour  

> fitmap #11 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4359, correlation about mean = 0.1949, overlap = 194.1  
steps = 80, shift = 1.58, angle = 3.89 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#12) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.36353153 -0.71735404 0.59434671 154.06453562  
-0.79368787 -0.57253760 -0.20557294 152.74816550  
0.48775442 -0.39699350 -0.77749062 208.36200830  
Axis -0.82503803 0.45942136 -0.32900495  
Axis point 0.00000000 125.16238233 66.04141985  
Rotation angle (degrees) 173.33828260  
Shift along axis -125.48546394  
  
Average map value = 0.4988 for 10778 atoms, 7951 outside contour  

> fitmap #11 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4386, correlation about mean = 0.1922, overlap = 197.9  
steps = 44, shift = 0.542, angle = 1.43 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#12) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.05232323 0.82466901 0.56319030 196.81072162  
0.57705195 -0.43530913 0.69102603 180.17878481  
0.81502958 0.36114678 -0.45310007 228.87880940  
Axis -0.68258705 -0.52110654 -0.51236988  
Axis point 0.00000000 19.62200970 40.56135103  
Rotation angle (degrees) 166.01670639  
Shift along axis -345.50340098  
  
Average map value = 0.5019 for 10778 atoms, 7778 outside contour  

> fitmap #11 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4386, correlation about mean = 0.1922, overlap = 197.9  
steps = 64, shift = 2.88, angle = 0.0181 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#12) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.05217555 0.82482000 0.56298285 196.81521140  
0.57695561 -0.43524677 0.69114575 180.17741117  
0.81510726 0.36087702 -0.45317527 228.87378791  
Axis -0.68262857 -0.52111299 -0.51230801  
Axis point 0.00000000 19.63004395 40.57064140  
Rotation angle (degrees) 166.00072942  
Shift along axis -345.49834880  
  
Average map value = 0.5019 for 10778 atoms, 7778 outside contour  

> fitmap #11 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4347, correlation about mean = 0.1578, overlap = 199.9  
steps = 64, shift = 2.89, angle = 2.16 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#12) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.25166472 -0.01011752 -0.96776159 192.93639065  
-0.40071161 -0.90912071 0.11370883 136.43966382  
-0.88096252 0.41640981 0.22473938 169.37895957  
Axis 0.60332323 -0.17300206 -0.77850586  
Axis point 172.71720403 31.67517226 0.00000000  
Rotation angle (degrees) 165.47151041  
Shift along axis -39.06384986  
  
Average map value = 0.4978 for 10778 atoms, 7804 outside contour  

> fitmap #11 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4437, correlation about mean = 0.2137, overlap = 192  
steps = 76, shift = 3.05, angle = 9.85 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#12) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.63263019 -0.26112694 -0.72910339 173.76229965  
0.11950404 -0.96308095 0.24123401 142.50878167  
-0.76517825 0.06548112 0.64047978 161.79096271  
Axis -0.41766632 0.08572977 0.90454699  
Axis point 116.28670561 75.91821700 0.00000000  
Rotation angle (degrees) 167.85428320  
Shift along axis 85.99011375  
  
Average map value = 0.486 for 10778 atoms, 7926 outside contour  

> fitmap #11 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4532, correlation about mean = 0.2158, overlap = 194.9  
steps = 52, shift = 5.32, angle = 5.4 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#12) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.30706124 0.21120131 0.92795873 192.90050762  
-0.94760676 -0.02237298 0.31865478 173.33675647  
0.08806151 -0.97718645 0.19326590 159.46873960  
Axis -0.67118901 0.43502998 -0.60021183  
Axis point 0.00000000 188.85508180 -142.52310767  
Rotation angle (degrees) 105.13076742  
Shift along axis -149.78103829  
  
Average map value = 0.4921 for 10778 atoms, 7716 outside contour  

> fitmap #11 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.43, correlation about mean = 0.1676, overlap = 193.5  
steps = 192, shift = 1.36, angle = 4.2 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#12) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.55179149 0.21630710 0.80544236 148.90126246  
0.80973835 -0.09221595 0.57949979 205.54120225  
0.19962454 0.97196057 -0.12426818 209.07834647  
Axis 0.41999012 0.64831317 0.63505774  
Axis point 7.95375966 0.00000000 1.78414441  
Rotation angle (degrees) 152.14560571  
Shift along axis 328.56894954  
  
Average map value = 0.4796 for 10778 atoms, 7739 outside contour  

> fitmap #11 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.43, correlation about mean = 0.1676, overlap = 193.5  
steps = 72, shift = 7.98, angle = 0.0324 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#12) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.55142554 0.21622208 0.80571576 148.91630853  
0.80992918 -0.09262910 0.57916712 205.57745047  
0.19986143 0.97194020 -0.12404652 209.09304960  
Axis 0.42017591 0.64812332 0.63512862  
Axis point 7.89380241 0.00000000 1.74379564  
Rotation angle (degrees) 152.13491096  
Shift along axis 328.61156568  
  
Average map value = 0.4796 for 10778 atoms, 7740 outside contour  

> fitmap #11 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4479, correlation about mean = 0.1784, overlap = 203.5  
steps = 204, shift = 37.3, angle = 47 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#12) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.82375411 -0.40452584 0.39722534 144.72149249  
0.44857145 -0.03656342 0.89299874 191.60793671  
-0.34671721 0.91379530 0.21157803 231.65932529  
Axis 0.01836984 0.65713307 0.75355072  
Axis point 71.10043081 23.44275430 -0.00000000  
Rotation angle (degrees) 145.52464598  
Shift along axis 303.13747257  
  
Average map value = 0.5063 for 10778 atoms, 7839 outside contour  

> fitmap #11 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4479, correlation about mean = 0.1785, overlap = 203.5  
steps = 92, shift = 18.1, angle = 0.241 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#12) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.82285637 -0.40793076 0.39560062 144.54125754  
0.44723575 -0.03544007 0.89371369 191.66296642  
-0.35055325 0.91232472 0.21160333 231.53651610  
Axis 0.01639625 0.65735920 0.75339899  
Axis point 71.27687477 23.65340794 0.00000000  
Rotation angle (degrees) 145.42121443  
Shift along axis 302.80072791  
  
Average map value = 0.5062 for 10778 atoms, 7836 outside contour  

> fitmap #11 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4479, correlation about mean = 0.1786, overlap = 203.5  
steps = 56, shift = 0.0691, angle = 0.0984 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#12) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.82226646 -0.40947702 0.39522956 144.45674031  
0.44712960 -0.03519815 0.89377636 191.65858668  
-0.35206959 0.91164113 0.21203157 231.51380256  
Axis 0.01571352 0.65731085 0.75345573  
Axis point 71.32488894 23.75601866 -0.00000000  
Rotation angle (degrees) 145.35766002  
Shift along axis 302.68459337  
  
Average map value = 0.5062 for 10778 atoms, 7828 outside contour  

> select down

Nothing selected  

> select down

Nothing selected  

> select down

Nothing selected  

> select down

Nothing selected  

> fitmap #11 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4821, correlation about mean = 0.2308, overlap = 224.8  
steps = 48, shift = 0.221, angle = 0.676 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#12) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.41335908 0.04038356 0.90967219 185.75919669  
0.68414742 -0.67303842 -0.28100110 174.44716022  
0.60089650 0.73850422 -0.30583477 231.81482107  
Axis 0.81910693 0.24808140 0.51722284  
Axis point 0.00000000 44.45062499 77.76176663  
Rotation angle (degrees) 141.51370793  
Shift along axis 315.33365968  
  
Average map value = 0.5642 for 10778 atoms, 7421 outside contour  

> fitmap #11 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4821, correlation about mean = 0.2307, overlap = 224.8  
steps = 40, shift = 0.0593, angle = 0.0266 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#12) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.41299959 0.04063261 0.90982437 185.80483468  
0.68435969 -0.67299078 -0.28059802 174.46884142  
0.60090197 0.73853397 -0.30575215 231.84400683  
Axis 0.81899675 0.24825679 0.51731315  
Axis point 0.00000000 44.44288826 77.72863619  
Rotation angle (degrees) 141.52426169  
Shift along axis 315.42258296  
  
Average map value = 0.5642 for 10778 atoms, 7416 outside contour  

> fitmap #11 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4821, correlation about mean = 0.2308, overlap = 224.8  
steps = 48, shift = 0.221, angle = 0.676 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#12) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.41335852 0.04038413 0.90967242 185.75918195  
0.68414850 -0.67303749 -0.28100072 174.44700851  
0.60089566 0.73850504 -0.30583443 231.81474916  
Axis 0.81910669 0.24808208 0.51722288  
Axis point 0.00000000 44.45046638 77.76166056  
Rotation angle (degrees) 141.51367521  
Shift along axis 315.33365809  
  
Average map value = 0.5642 for 10778 atoms, 7421 outside contour  

> fitmap #11 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4821, correlation about mean = 0.2307, overlap = 224.8  
steps = 40, shift = 0.0612, angle = 0.0256 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#12) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.41302088 0.04063533 0.90981459 185.80662577  
0.68436013 -0.67298301 -0.28061559 174.46994045  
0.60088684 0.73854091 -0.30576515 231.84551053  
Axis 0.81900313 0.24825705 0.51730291  
Axis point 0.00000000 44.44230980 77.73085019  
Rotation angle (degrees) 141.52352174  
Shift along axis 315.42395986  
  
Average map value = 0.5642 for 10778 atoms, 7416 outside contour  

> fitmap #11 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4679, correlation about mean = 0.2177, overlap = 213.6  
steps = 52, shift = 1.45, angle = 2.33 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#12) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.65753575 0.23882258 0.71457020 205.11371650  
0.73717064 -0.00799786 -0.67565931 222.84266646  
-0.15564762 0.97103030 -0.18131180 217.02477720  
Axis 0.85408839 0.45135582 0.25847816  
Axis point 0.00000000 -1.28712380 110.04348520  
Rotation angle (degrees) 105.41966244  
Shift along axis 331.86274089  
  
Average map value = 0.5427 for 10778 atoms, 7590 outside contour  

> fitmap #11 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4821, correlation about mean = 0.2308, overlap = 224.8  
steps = 48, shift = 0.221, angle = 0.676 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#12) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.41335852 0.04038413 0.90967242 185.75918189  
0.68414850 -0.67303749 -0.28100072 174.44700859  
0.60089566 0.73850504 -0.30583443 231.81474914  
Axis 0.81910669 0.24808208 0.51722288  
Axis point 0.00000000 44.45046648 77.76166076  
Rotation angle (degrees) 141.51367513  
Shift along axis 315.33365792  
  
Average map value = 0.5642 for 10778 atoms, 7421 outside contour  

> select add #11

10778 atoms, 11624 bonds, 336 residues, 1 model selected  

> view matrix models
> #11,-0.38793,0.91305,-0.1259,728.47,0.62568,0.36118,0.69143,236.27,0.67678,0.18945,-0.71139,-224.95

> fitmap #11 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#11) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5647, steps = 72  
shifted from previous position = 7.72  
rotated from previous position = 0.667 degrees  
atoms outside contour = 7438, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#11) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.42292110 0.04466869 0.90506492 186.29739972  
0.68082200 -0.67479776 -0.28483226 174.19915113  
0.59801269 0.73664967 -0.31579755 231.95076990  
Axis 0.82249362 0.24723737 0.51222839  
Axis point 0.00000000 44.17143209 78.34183502  
Rotation angle (degrees) 141.61325353  
Shift along axis 315.10873289  
  

> fitmap #11 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#11) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5647, steps = 60  
shifted from previous position = 0.0372  
rotated from previous position = 0.0139 degrees  
atoms outside contour = 7436, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#11) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.42310812 0.04476503 0.90497275 186.27491163  
0.68073803 -0.67485901 -0.28488784 174.18896164  
0.59797599 0.73658770 -0.31601150 231.93243929  
Axis 0.82256221 0.24721486 0.51212911  
Axis point 0.00000000 44.16998163 78.35339865  
Rotation angle (degrees) 141.61732201  
Shift along axis 315.06415537  
  

> ui mousemode right "rotate selected models"

> view matrix models
> #11,-0.11727,0.67466,-0.72876,735.61,-0.99212,-0.047,0.11614,183.46,0.044102,0.73663,0.67485,-240.81

> view matrix models
> #11,0.52545,-0.46045,-0.71546,711.63,0.70504,0.70634,0.063218,251.11,0.47625,-0.53765,0.69578,-274.38

> view matrix models
> #11,0.30175,0.12682,-0.94492,729.18,0.85581,-0.47283,0.20983,212.88,-0.42017,-0.87198,-0.25121,-294.36

> fitmap #11 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#11) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.4893, steps = 116  
shifted from previous position = 15.6  
rotated from previous position = 15.2 degrees  
atoms outside contour = 7873, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#11) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.74073576 -0.30490870 0.59861611 188.66284851  
-0.67030849 -0.39472847 0.62839153 150.13178504  
0.04468876 -0.86672958 -0.49677243 154.62121679  
Axis -0.91401736 0.33863425 -0.22338107  
Axis point 0.00000000 144.02179935 -3.39773314  
Rotation angle (degrees) 125.12642766  
Shift along axis -156.14080745  
  

> fitmap #11 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#11) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.4893, steps = 92  
shifted from previous position = 15  
rotated from previous position = 0.00571 degrees  
atoms outside contour = 7874, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#11) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.74070087 -0.30487315 0.59867739 188.65872983  
-0.67034123 -0.39476658 0.62833267 150.12620526  
0.04477604 -0.86672473 -0.49677304 154.62500428  
Axis -0.91400735 0.33862908 -0.22342989  
Axis point 0.00000000 144.01516420 -3.39679145  
Rotation angle (degrees) 125.12900639  
Shift along axis -156.14621460  
  

> view matrix models
> #11,-0.74637,0.66317,0.056075,708.56,0.37754,0.3525,0.85628,219.76,0.54809,0.66027,-0.51347,-224.07

> ui mousemode right "translate selected models"

> view matrix models
> #11,-0.74637,0.66317,0.056075,694.78,0.37754,0.3525,0.85628,214.34,0.54809,0.66027,-0.51347,-217.45

> view matrix models
> #11,-0.74637,0.66317,0.056075,711.71,0.37754,0.3525,0.85628,225.88,0.54809,0.66027,-0.51347,-211.21

> fitmap #11 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#11) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.531, steps = 88  
shifted from previous position = 3.66  
rotated from previous position = 19.2 degrees  
atoms outside contour = 7603, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#11) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.54800315 -0.06028954 -0.83430078 190.11685703  
-0.66257367 0.64008870 0.38895066 197.47222773  
0.51057681 0.76593190 -0.39071682 235.15918283  
Axis 0.24784471 -0.88418405 -0.39596914  
Axis point 84.19298631 -0.00000000 137.19264567  
Rotation angle (degrees) 130.49002382  
Shift along axis -220.59811600  
  

> fitmap #11 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#11) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.531, steps = 80  
shifted from previous position = 8.92  
rotated from previous position = 0.0389 degrees  
atoms outside contour = 7602, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#11) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.54842793 -0.05989584 -0.83404998 190.16832146  
-0.66209942 0.64031907 0.38937883 197.46745280  
0.51073591 0.76577021 -0.39082580 235.14431123  
Axis 0.24749907 -0.88427438 -0.39598363  
Axis point 84.20200110 -0.00000000 137.16359351  
Rotation angle (degrees) 130.50145299  
Shift along axis -220.66222421  
  

> fitmap #11 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#11) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5307, steps = 96  
shifted from previous position = 20  
rotated from previous position = 19.5 degrees  
atoms outside contour = 7465, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#11) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.40698735 -0.11135563 -0.90662081 188.12675488  
-0.54580230 0.82551385 0.14362020 201.17040243  
0.73243509 0.55328731 -0.39675179 227.73751892  
Axis 0.23484145 -0.93958790 -0.24904632  
Axis point 63.86485894 0.00000000 160.59973782  
Rotation angle (degrees) 119.28227503  
Shift along axis -201.55450715  
  

> fitmap #11 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#11) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5307, steps = 48  
shifted from previous position = 2.65  
rotated from previous position = 0.00715 degrees  
atoms outside contour = 7467, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#11) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.40688771 -0.11142070 -0.90665754 188.11225684  
-0.54584266 0.82550559 0.14351427 201.17691441  
0.73246037 0.55328653 -0.39670619 227.73767873  
Axis 0.23489138 -0.93958208 -0.24902118  
Axis point 63.85644929 0.00000000 160.60666793  
Rotation angle (degrees) 119.27777596  
Shift along axis -201.54778211  
  

> fitmap #11 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#11) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5307, steps = 60  
shifted from previous position = 6.08  
rotated from previous position = 0.00453 degrees  
atoms outside contour = 7467, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#11) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.40695690 -0.11141842 -0.90662676 188.11638376  
-0.54584142 0.82549788 0.14356327 201.16900880  
0.73242286 0.55329849 -0.39675878 227.73847552  
Axis 0.23487992 -0.93958204 -0.24903215  
Axis point 63.86117089 0.00000000 160.60100235  
Rotation angle (degrees) 119.28202887  
Shift along axis -201.54422840  
  

> fitmap #11 inMap #10 search 500

Found 236 unique fits from 500 random placements having fraction of points
inside contour >= 0.100 (497 of 500).  
  
Average map values and times found:  
0.5647 (8), 0.5477 (4), 0.5444 (10), 0.544 (11), 0.543 (5), 0.5394 (2), 0.5354
(3), 0.5327 (6), 0.5316 (2), 0.531 (1), 0.5307 (8), 0.5246 (2), 0.5246 (2),
0.5238 (5), 0.5215 (1), 0.519 (3), 0.5148 (3), 0.5146 (2), 0.5081 (3), 0.5077
(1), 0.507 (3), 0.5069 (1), 0.5064 (2), 0.5041 (3), 0.504 (2), 0.503 (6),
0.503 (2), 0.5029 (5), 0.502 (1), 0.4996 (3), 0.4989 (1), 0.497 (6), 0.4963
(2), 0.4907 (2), 0.4903 (7), 0.4893 (5), 0.4868 (2), 0.486 (2), 0.4848 (6),
0.4848 (4), 0.4831 (1), 0.4831 (4), 0.4825 (3), 0.4819 (2), 0.481 (4), 0.4797
(2), 0.4797 (1), 0.4787 (1), 0.4767 (5), 0.4764 (4), 0.4762 (5), 0.4744 (1),
0.4716 (4), 0.4712 (2), 0.4698 (2), 0.4693 (3), 0.4691 (1), 0.4682 (3), 0.4664
(3), 0.4646 (2), 0.4641 (2), 0.4628 (2), 0.4617 (1), 0.4603 (3), 0.4603 (1),
0.46 (1), 0.4598 (1), 0.4596 (3), 0.4596 (1), 0.4585 (2), 0.4581 (4), 0.4573
(6), 0.456 (2), 0.4554 (2), 0.4552 (4), 0.4545 (1), 0.4524 (2), 0.4522 (1),
0.4518 (7), 0.4517 (2), 0.4515 (4), 0.4511 (1), 0.4501 (1), 0.45 (3), 0.45
(2), 0.4498 (3), 0.4488 (2), 0.4485 (1), 0.4484 (4), 0.4481 (1), 0.4474 (1),
0.4472 (3), 0.4468 (1), 0.4455 (1), 0.4446 (1), 0.4444 (4), 0.4443 (3), 0.4435
(2), 0.4418 (1), 0.4404 (2), 0.4402 (1), 0.4399 (1), 0.4389 (2), 0.4388 (1),
0.4379 (1), 0.4371 (1), 0.437 (2), 0.435 (2), 0.4337 (2), 0.4331 (1), 0.432
(2), 0.4313 (1), 0.4308 (1), 0.4307 (2), 0.4299 (3), 0.4298 (2), 0.4298 (2),
0.4295 (3), 0.429 (1), 0.4286 (1), 0.4278 (1), 0.4265 (2), 0.4251 (1), 0.4247
(2), 0.4244 (1), 0.4243 (2), 0.4243 (5), 0.423 (2), 0.4223 (2), 0.4217 (1),
0.4216 (2), 0.4213 (1), 0.4199 (1), 0.419 (3), 0.4188 (2), 0.4187 (1), 0.4183
(2), 0.418 (1), 0.4157 (1), 0.4147 (1), 0.4133 (1), 0.4131 (6), 0.4125 (3),
0.4111 (4), 0.4104 (2), 0.4101 (1), 0.4099 (1), 0.4099 (1), 0.4067 (3), 0.4066
(1), 0.4045 (1), 0.404 (1), 0.4027 (1), 0.4027 (1), 0.4008 (1), 0.4007 (1),
0.4004 (1), 0.4004 (1), 0.3994 (1), 0.3989 (1), 0.3988 (2), 0.3978 (1), 0.3972
(1), 0.3964 (4), 0.3962 (2), 0.3955 (3), 0.3955 (1), 0.3929 (1), 0.3929 (3),
0.3915 (1), 0.3894 (1), 0.3887 (1), 0.3846 (2), 0.3841 (1), 0.3833 (1), 0.3822
(1), 0.3812 (1), 0.3805 (3), 0.3805 (2), 0.3801 (2), 0.3795 (1), 0.3785 (1),
0.3779 (1), 0.3776 (2), 0.3775 (1), 0.3753 (1), 0.3693 (2), 0.3692 (1), 0.3681
(2), 0.3675 (1), 0.3669 (1), 0.3662 (1), 0.3643 (2), 0.3643 (2), 0.3631 (2),
0.3613 (1), 0.3609 (1), 0.3564 (2), 0.3561 (1), 0.3555 (1), 0.3549 (1), 0.3536
(1), 0.3517 (2), 0.3478 (1), 0.3462 (1), 0.3458 (2), 0.345 (2), 0.3445 (1),
0.3395 (1), 0.3383 (1), 0.3381 (2), 0.338 (1), 0.3355 (1), 0.3332 (1), 0.3305
(1), 0.3292 (3), 0.3267 (1), 0.3252 (2), 0.3244 (1), 0.3215 (1), 0.3202 (1),
0.3174 (1), 0.3096 (1), 0.3065 (1), 0.3059 (3), 0.3018 (4), 0.3006 (1), 0.2811
(1), 0.2737 (1), 0.2728 (1), 0.2711 (1), 0.27 (1), 0.2239 (1), 0.1624 (1),
0.1622 (1), 0.1472 (1)  
  
Best fit found:  
Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#11) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5647, steps = 816  
shifted from previous position = 57.8  
rotated from previous position = 120 degrees  
atoms outside contour = 7436, contour level = 0.41421  
Position of Kendall_Fran_SHAPE_MaP.pdb (#11) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.42333157 0.04459045 0.90487679 186.26507354  
0.68059512 -0.67489332 -0.28514777 174.18755058  
0.59798047 0.73656683 -0.31605164 231.92860829  
Axis 0.82263015 0.24709656 0.51207707  
Axis point 0.00000000 44.17885179 78.37665724  
Rotation angle (degrees) 141.61044861  
Shift along axis 315.03373283  
  
Found 236 fits.  

> open
> /Users/francescappadoo/Downloads/rnacomposer-2024-07-03-104300/Madden_Fran_SHAPE_MaP.pdb

Chain information for Madden_Fran_SHAPE_MaP.pdb #14  
---  
Chain | Description  
A | No description available  
  

> hide #14 models

> fitmap #11 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4821, correlation about mean = 0.2306, overlap = 224.8  
steps = 48, shift = 0.201, angle = 0.693 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#12) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.41326798 0.04055328 0.90970596 185.81741383  
0.68428186 -0.67296012 -0.28086112 174.47961561  
0.60080603 0.73856624 -0.30586269 231.85935760  
Axis 0.81907803 0.24819144 0.51721580  
Axis point 0.00000000 44.44487915 77.75873830  
Rotation angle (degrees) 141.51558367  
Shift along axis 315.42463234  
  
Average map value = 0.5642 for 10778 atoms, 7417 outside contour  

> show #!12 models

> hide #!12 models

> show #!12 models

> hide #!12 models

Opened Kendall_Fran_SHAPE_MaP.pdb map 17 as #2, grid size 41,46,36, pixel
5.67, shown at level 0.0302, step 1, values float32  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.4941, correlation about mean = 0.2787, overlap = 151  
steps = 48, shift = 0.573, angle = 1.07 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.40749195 0.04013276 0.91232648 185.78112146  
0.68195412 -0.67781637 -0.27477900 174.29417412  
0.60736222 0.73413508 -0.30357336 231.49336686  
Axis 0.81757248 0.24712747 0.52009927  
Axis point 0.00000000 44.82071122 77.00241812  
Rotation angle (degrees) 141.90129072  
Shift along axis 315.36194184  
  
Average map value = 0.5639 for 10778 atoms, 7388 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.4767, correlation about mean = 0.2553, overlap = 142.4  
steps = 144, shift = 2.82, angle = 7.85 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.64530535 0.25593873 0.71977518 205.43426075  
0.75783254 -0.09571767 -0.64538977 218.71028989  
-0.09628501 0.96194257 -0.25572577 220.23369404  
Axis 0.85898731 0.43611724 0.26822108  
Axis point 0.00000000 4.28793128 107.98432079  
Rotation angle (degrees) 110.67514711  
Shift along axis 330.92007111  
  
Average map value = 0.5355 for 10778 atoms, 7677 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.4941, correlation about mean = 0.2787, overlap = 151  
steps = 48, shift = 0.573, angle = 1.07 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.40749194 0.04013277 0.91232648 185.78112155  
0.68195413 -0.67781638 -0.27477901 174.29417425  
0.60736222 0.73413508 -0.30357336 231.49336680  
Axis 0.81757248 0.24712747 0.52009927  
Axis point 0.00000000 44.82071099 77.00241827  
Rotation angle (degrees) 141.90129069  
Shift along axis 315.36194187  
  
Average map value = 0.5639 for 10778 atoms, 7388 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.472, correlation about mean = 0.2549, overlap = 142.8  
steps = 40, shift = 0.795, angle = 1.8 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.71518149 -0.55429252 0.42576423 174.67263670  
-0.10917616 -0.69027484 -0.71526302 180.63190162  
0.69035935 0.46505956 -0.55418729 227.70922626  
Axis 0.91574934 -0.20528524 0.34534204  
Axis point 0.00000000 78.36504798 125.18618163  
Rotation angle (degrees) 139.87500560  
Shift along axis 201.51285617  
  
Average map value = 0.5459 for 10778 atoms, 7725 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.4767, correlation about mean = 0.2553, overlap = 142.4  
steps = 144, shift = 2.82, angle = 7.85 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.64530508 0.25593865 0.71977544 205.43427073  
0.75783287 -0.09571859 -0.64538923 218.71028158  
-0.09628413 0.96194249 -0.25572636 220.23373868  
Axis 0.85898730 0.43611707 0.26822140  
Axis point 0.00000000 4.28802708 107.98428322  
Rotation angle (degrees) 110.67520204  
Shift along axis 330.92011881  
  
Average map value = 0.5355 for 10778 atoms, 7677 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.4693, correlation about mean = 0.2224, overlap = 144.1  
steps = 52, shift = 1.05, angle = 2.48 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.82795091 0.28612236 -0.48231857 225.65959641  
-0.54168561 0.18539190 -0.81988201 184.94066124  
-0.14516856 0.94008713 0.30848374 235.30891458  
Axis 0.89160347 -0.17080079 -0.41936898  
Axis point 0.00000000 -60.75100565 300.70638437  
Rotation angle (degrees) 80.74008983  
Shift along axis 70.92960961  
  
Average map value = 0.5419 for 10778 atoms, 7575 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.4715, correlation about mean = 0.2471, overlap = 134.6  
steps = 44, shift = 1.24, angle = 2 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.36474454 -0.10009390 -0.92571194 187.08307082  
-0.83368873 -0.40762861 0.37256143 150.28768069  
-0.41463782 0.90764535 0.06523308 211.65304535  
Axis 0.51353778 -0.49049477 -0.70405527  
Axis point 188.32931190 -48.90828995 0.00000000  
Rotation angle (degrees) 148.60211384  
Shift along axis -126.65654071  
  
Average map value = 0.5007 for 10778 atoms, 7698 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.4373, correlation about mean = 0.2079, overlap = 131.5  
steps = 76, shift = 1.14, angle = 2.7 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.71919371 0.61078503 -0.33121298 202.95135417  
0.25249389 0.67385475 0.69438219 192.72739407  
0.64730762 0.41576609 -0.63885161 225.45506156  
Axis -0.25829894 -0.90716524 -0.33216395  
Axis point 53.85146595 0.00000000 97.59980776  
Rotation angle (degrees) 147.36204335  
Shift along axis -302.14575567  
  
Average map value = 0.4993 for 10778 atoms, 7846 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.4432, correlation about mean = 0.1923, overlap = 134.9  
steps = 52, shift = 3.14, angle = 1.87 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.25106383 -0.00238102 -0.96796760 193.19529413  
-0.39324827 -0.91350361 0.10424472 137.06526864  
-0.88449011 0.40682366 0.22841130 168.91826967  
Axis 0.60359092 -0.16652267 -0.77971033  
Axis point 172.65766900 32.84721311 0.00000000  
Rotation angle (degrees) 165.48407978  
Shift along axis -37.92086754  
  
Average map value = 0.4983 for 10778 atoms, 7780 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.4691, correlation about mean = 0.2251, overlap = 143.6  
steps = 120, shift = 10.5, angle = 19.8 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.62072430 0.76072526 -0.18973255 254.80279160  
-0.63188242 0.34213816 -0.69546108 195.29761084  
-0.46414002 0.55157827 0.69306233 199.67520836  
Axis 0.66002514 0.14523666 -0.73707064  
Axis point 396.19796357 -94.58315656 0.00000000  
Rotation angle (degrees) 70.85485225  
Shift along axis 49.36588857  
  
Average map value = 0.5379 for 10778 atoms, 7592 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.4452, correlation about mean = 0.2296, overlap = 129.4  
steps = 208, shift = 3.08, angle = 9.25 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.62655937 -0.25978325 -0.73480341 173.68342014  
0.10743607 -0.96260121 0.24870955 142.86580175  
-0.77193320 0.07688688 0.63103683 162.13925297  
Axis -0.42203794 0.09119973 0.90197926  
Axis point 117.07548329 75.20787850 0.00000000  
Rotation angle (degrees) 168.25460533  
Shift along axis 85.97457219  
  
Average map value = 0.4856 for 10778 atoms, 7893 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.4452, correlation about mean = 0.2296, overlap = 129.4  
steps = 40, shift = 0.0293, angle = 0.0684 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.62680685 -0.26072498 -0.73425859 173.66052480  
0.10839826 -0.96236937 0.24918878 142.89599198  
-0.77159770 0.07660085 0.63148178 162.11573639  
Axis -0.42178408 0.09125227 0.90209269  
Axis point 116.99099326 75.27973809 0.00000000  
Rotation angle (degrees) 168.19434066  
Shift along axis 86.03575896  
  
Average map value = 0.4856 for 10778 atoms, 7893 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.458, correlation about mean = 0.2431, overlap = 131.6  
steps = 48, shift = 4.81, angle = 5.19 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.30355771 0.21101185 0.92915377 192.75246677  
-0.94809551 -0.03002596 0.31656493 172.80989698  
0.09469768 -0.97702219 0.19094481 159.20852706  
Axis -0.67130621 0.43304046 -0.60151803  
Axis point 0.00000000 187.50923390 -141.42149668  
Rotation angle (degrees) 105.53111974  
Shift along axis -150.32905021  
  
Average map value = 0.4928 for 10778 atoms, 7717 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.4339, correlation about mean = 0.1906, overlap = 130.9  
steps = 236, shift = 9.94, angle = 9.39 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.55068331 0.23938759 0.79965085 148.66399645  
0.81055502 -0.07545596 0.58078135 205.03370108  
0.19937026 0.96798758 -0.15248442 210.18877044  
Axis 0.42336014 0.65632950 0.62449802  
Axis point 9.10272480 0.00000000 5.80227101  
Rotation angle (degrees) 152.78690184  
Shift along axis 328.77054812  
  
Average map value = 0.4781 for 10778 atoms, 7721 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.3795, correlation about mean = 0.1984, overlap = 66.17  
steps = 216, shift = 27.9, angle = 49.3 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.87487175 0.02611014 0.48365040 152.45735182  
0.38767418 0.63635168 0.66690725 202.75840175  
-0.29035875 0.77095705 -0.56684829 238.79416782  
Axis 0.12090275 0.89937544 0.42012659  
Axis point 76.71833744 0.00000000 57.44849463  
Rotation angle (degrees) 154.51316504  
Shift along axis 301.11221790  
  
Average map value = 0.2488 for 10778 atoms, 8810 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.458, correlation about mean = 0.2431, overlap = 131.6  
steps = 48, shift = 4.81, angle = 5.19 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.30355928 0.21101187 0.92915326 192.75246814  
-0.94809513 -0.03002433 0.31656623 172.81002707  
0.09469646 -0.97702224 0.19094522 159.20868945  
Axis -0.67130657 0.43304060 -0.60151752  
Axis point -0.00000000 187.50947455 -141.42157580  
Rotation angle (degrees) 105.53101252  
Shift along axis -150.32905639  
  
Average map value = 0.4928 for 10778 atoms, 7717 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.458, correlation about mean = 0.2431, overlap = 131.6  
steps = 44, shift = 0.0144, angle = 0.0169 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.30342164 0.21092236 0.92921854 192.74389011  
-0.94816423 -0.02982523 0.31637804 172.82156097  
0.09444538 -0.97704767 0.19093947 159.21495997  
Axis -0.67121670 0.43320129 -0.60150210  
Axis point 0.00000000 187.57368201 -141.45284770  
Rotation angle (degrees) 105.52935586  
Shift along axis -150.27452828  
  
Average map value = 0.4928 for 10778 atoms, 7715 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.4339, correlation about mean = 0.1906, overlap = 130.9  
steps = 1044, shift = 9.96, angle = 9.37 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.55099842 0.23895555 0.79956301 148.66916474  
0.81048619 -0.07499138 0.58093757 205.04969246  
0.19877854 0.96813044 -0.15234998 210.19891188  
Axis 0.42309022 0.65648427 0.62451827  
Axis point 9.15722111 0.00000000 5.80263202  
Rotation angle (degrees) 152.76912100  
Shift along axis 328.78542805  
  
Average map value = 0.4781 for 10778 atoms, 7725 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.4467, correlation about mean = 0.243, overlap = 129.7  
steps = 84, shift = 1.75, angle = 3.25 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.17696403 -0.26523090 -0.94780605 192.48805866  
0.03428629 -0.96408164 0.26338387 155.56083858  
-0.98361994 0.01411270 0.17970149 135.84373625  
Axis -0.63700511 0.09152134 0.76540730  
Axis point 142.70715205 81.89919261 0.00000000  
Rotation angle (degrees) 168.71679517  
Shift along axis -4.40295254  
  
Average map value = 0.4859 for 10778 atoms, 8024 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.4421, correlation about mean = 0.1912, overlap = 131.2  
steps = 88, shift = 1.44, angle = 2.62 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.76671035 -0.30066663 0.56723438 190.31321237  
-0.64161790 -0.38907396 0.66102039 150.47576012  
0.02194940 -0.87075890 -0.49122006 152.45240422  
Axis -0.92203426 0.32822707 -0.20523110  
Axis point 0.00000000 143.87762959 -3.43890756  
Rotation angle (degrees) 123.83422163  
Shift along axis -157.37305904  
  
Average map value = 0.4845 for 10778 atoms, 7876 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.4422, correlation about mean = 0.1912, overlap = 131.2  
steps = 52, shift = 2.59, angle = 0.0884 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.76768254 -0.29986970 0.56634063 190.40063820  
-0.64044728 -0.38956819 0.66186399 150.47842322  
0.02215539 -0.87081274 -0.49111537 152.45197222  
Axis -0.92235771 0.32748814 -0.20495800  
Axis point 0.00000000 143.80866205 -3.40450713  
Rotation angle (degrees) 123.81412893  
Shift along axis -157.58384858  
  
Average map value = 0.4844 for 10778 atoms, 7874 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.4422, correlation about mean = 0.1913, overlap = 131.1  
steps = 60, shift = 0.0571, angle = 0.232 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.77020598 -0.29763653 0.56408799 190.62438654  
-0.63739328 -0.39059747 0.66420136 150.46871032  
0.02264080 -0.87111775 -0.49055198 152.44008539  
Axis -0.92318325 0.32557074 -0.20429482  
Axis point 0.00000000 143.63015183 -3.34440174  
Rotation angle (degrees) 123.74321333  
Shift along axis -158.13575220  
  
Average map value = 0.4842 for 10778 atoms, 7873 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.4422, correlation about mean = 0.1913, overlap = 131.1  
steps = 48, shift = 0.0191, angle = 0.0705 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.77097385 -0.29733698 0.56319629 190.64768431  
-0.63646513 -0.39112562 0.66478035 150.46358391  
0.02261676 -0.87098307 -0.49079218 152.44876422  
Axis -0.92345059 0.32504908 -0.20391688  
Axis point 0.00000000 143.57213219 -3.26431754  
Rotation angle (degrees) 123.74323001  
Shift along axis -158.23254493  
  
Average map value = 0.4842 for 10778 atoms, 7873 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.4422, correlation about mean = 0.1914, overlap = 131.1  
steps = 64, shift = 0.0479, angle = 0.215 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.77328790 -0.29521981 0.56113378 190.85337500  
-0.63363172 -0.39214322 0.66688422 150.46625255  
0.02316742 -0.87124566 -0.49030018 152.43262314  
Axis -0.92421039 0.32324584 -0.20334031  
Axis point 0.00000000 143.40368065 -3.21199020  
Rotation angle (degrees) 123.68163678  
Shift along axis -158.74677782  
  
Average map value = 0.4839 for 10778 atoms, 7874 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.4422, correlation about mean = 0.1915, overlap = 131  
steps = 48, shift = 0.0797, angle = 0.122 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.77450156 -0.29397805 0.56011093 191.00081645  
-0.63214830 -0.39210079 0.66831544 150.53896310  
0.02314992 -0.87168452 -0.48952034 152.38289330  
Axis -0.92458126 0.32237929 -0.20302979  
Axis point 0.00000000 143.38485479 -3.28017807  
Rotation angle (degrees) 123.61157396  
Shift along axis -159.00339854  
  
Average map value = 0.4836 for 10778 atoms, 7875 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.4422, correlation about mean = 0.1914, overlap = 131.1  
steps = 48, shift = 0.0419, angle = 0.203 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.77232322 -0.29560350 0.56225922 190.83354764  
-0.63480042 -0.39169544 0.66603539 150.48956528  
0.02335203 -0.87131698 -0.49016465 152.43581830  
Axis -0.92388434 0.32386063 -0.20384313  
Axis point 0.00000000 143.47374196 -3.29740225  
Rotation angle (degrees) 123.69476729  
Shift along axis -158.64347499  
  
Average map value = 0.4839 for 10778 atoms, 7874 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.4422, correlation about mean = 0.1913, overlap = 131.2  
steps = 40, shift = 0.0657, angle = 0.267 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.76943958 -0.29818650 0.56484296 190.57083836  
-0.63831448 -0.39047920 0.66338575 150.46079550  
0.02274680 -0.87098268 -0.49078685 152.45619272  
Axis -0.92293915 0.32607668 -0.20459065  
Axis point 0.00000000 143.66315170 -3.35409583  
Rotation angle (degrees) 123.77363987  
Shift along axis -158.01464071  
  
Average map value = 0.4842 for 10778 atoms, 7874 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.4422, correlation about mean = 0.1913, overlap = 131.2  
steps = 44, shift = 0.0114, angle = 0.0324 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.76908311 -0.29846031 0.56518371 190.54489325  
-0.63874666 -0.39027362 0.66309068 150.47102035  
0.02267009 -0.87098104 -0.49079332 152.45232762  
Axis -0.92281909 0.32634845 -0.20469886  
Axis point 0.00000000 143.69507712 -3.37629279  
Rotation angle (degrees) 123.77906296  
Shift along axis -157.93929855  
  
Average map value = 0.4842 for 10778 atoms, 7873 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.4422, correlation about mean = 0.1912, overlap = 131.2  
steps = 44, shift = 0.02, angle = 0.00676 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.76912141 -0.29844461 0.56513988 190.54597049  
-0.63869848 -0.39037977 0.66307460 150.44923041  
0.02272819 -0.87093885 -0.49086550 152.46060612  
Axis -0.92283604 0.32630552 -0.20469086  
Axis point 0.00000000 143.67683946 -3.35751589  
Rotation angle (degrees) 123.78388974  
Shift along axis -157.95756634  
  
Average map value = 0.4843 for 10778 atoms, 7871 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.4422, correlation about mean = 0.1912, overlap = 131.2  
steps = 44, shift = 0.0191, angle = 0.0222 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.76888755 -0.29868669 0.56533018 190.51163324  
-0.63898372 -0.39024341 0.66288002 150.44101765  
0.02262299 -0.87091697 -0.49090917 152.46204970  
Axis -0.92275826 0.32650185 -0.20472846  
Axis point 0.00000000 143.69183378 -3.35783754  
Rotation angle (degrees) 123.78875584  
Shift along axis -157.89023338  
  
Average map value = 0.4843 for 10778 atoms, 7875 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.4422, correlation about mean = 0.1913, overlap = 131.2  
steps = 44, shift = 0.0117, angle = 0.18 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.77086646 -0.29713737 0.56344858 190.65098568  
-0.63658121 -0.39129598 0.66456892 150.44698832  
0.02300695 -0.87097467 -0.49078895 152.46118719  
Axis -0.92342025 0.32500200 -0.20412922  
Axis point 0.00000000 143.54612980 -3.26864156  
Rotation angle (degrees) 123.75268811  
Shift along axis -158.27719162  
  
Average map value = 0.4842 for 10778 atoms, 7875 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.4422, correlation about mean = 0.1914, overlap = 131.1  
steps = 44, shift = 0.0746, angle = 0.109 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.77198733 -0.29599052 0.56251683 190.79870682  
-0.63521584 -0.39149046 0.66575978 150.49518745  
0.02316144 -0.87127772 -0.49024349 152.43474482  
Axis -0.92377276 0.32415723 -0.20387733  
Axis point 0.00000000 143.50777057 -3.30471503  
Rotation angle (degrees) 123.70198949  
Shift along axis -158.54853434  
  
Average map value = 0.484 for 10778 atoms, 7874 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.4422, correlation about mean = 0.1913, overlap = 131.2  
steps = 40, shift = 0.0966, angle = 0.23 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.76951535 -0.29823391 0.56471469 190.53764475  
-0.63822377 -0.39060016 0.66340181 150.44009849  
0.02272879 -0.87091221 -0.49091273 152.46094067  
Axis -0.92296994 0.32603280 -0.20452164  
Axis point 0.00000000 143.64159304 -3.32105454  
Rotation angle (degrees) 123.77953592  
Shift along axis -157.99367442  
  
Average map value = 0.4843 for 10778 atoms, 7875 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.4422, correlation about mean = 0.1914, overlap = 131.1  
steps = 60, shift = 0.0926, angle = 0.242 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.77211219 -0.29586704 0.56241042 190.80394643  
-0.63506355 -0.39151291 0.66589185 150.49423207  
0.02317554 -0.87130957 -0.49018620 152.43098007  
Axis -0.92381215 0.32406406 -0.20384698  
Axis point 0.00000000 143.49873852 -3.30483810  
Rotation angle (degrees) 123.69649078  
Shift along axis -158.56982750  
  
Average map value = 0.4839 for 10778 atoms, 7875 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.4422, correlation about mean = 0.1913, overlap = 131.1  
steps = 44, shift = 0.0462, angle = 0.236 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.76955187 -0.29809366 0.56473897 190.58503967  
-0.63818335 -0.39034007 0.66359376 150.49209431  
0.02262721 -0.87107682 -0.49062528 152.44052106  
Axis -0.92296759 0.32603192 -0.20453364  
Axis point 0.00000000 143.68285202 -3.37994893  
Rotation angle (degrees) 123.75940793  
Shift along axis -158.01780422  
  
Average map value = 0.4842 for 10778 atoms, 7872 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.4422, correlation about mean = 0.1912, overlap = 131.2  
steps = 44, shift = 0.0447, angle = 0.128 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.76818028 -0.29940286 0.56591255 190.44882940  
-0.63984975 -0.38962675 0.66240722 150.46585586  
0.02216810 -0.87094716 -0.49087637 152.44276626  
Axis -0.92251345 0.32713349 -0.20482338  
Axis point 0.00000000 143.77682524 -3.40636604  
Rotation angle (degrees) 123.79074874  
Shift along axis -157.69302973  
  
Average map value = 0.4843 for 10778 atoms, 7872 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.4422, correlation about mean = 0.1912, overlap = 131.2  
steps = 44, shift = 0.0211, angle = 0.00781 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.76818548 -0.29936920 0.56592329 190.45035230  
-0.63983965 -0.38974410 0.66234793 150.48375581  
0.02227874 -0.87090622 -0.49094399 152.44720531  
Axis -0.92251992 0.32709706 -0.20485239  
Axis point 0.00000000 143.77678966 -3.40337714  
Rotation angle (degrees) 123.79694522  
Shift along axis -157.70062436  
  
Average map value = 0.4843 for 10778 atoms, 7873 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.4422, correlation about mean = 0.1913, overlap = 131.1  
steps = 60, shift = 0.0413, angle = 0.17 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.77002922 -0.29773877 0.56427533 190.61800095  
-0.63760474 -0.39058765 0.66400415 150.48886664  
0.02269924 -0.87108722 -0.49060349 152.44198636  
Axis -0.92312733 0.32567683 -0.20437843  
Axis point 0.00000000 143.64696351 -3.35520551  
Rotation angle (degrees) 123.75073992  
Shift along axis -158.10980341  
  
Average map value = 0.4842 for 10778 atoms, 7872 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.4422, correlation about mean = 0.1913, overlap = 131.2  
steps = 48, shift = 0.0571, angle = 0.0285 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.76990111 -0.29789409 0.56436815 190.57447040  
-0.63775166 -0.39091474 0.66367049 150.43255822  
0.02291636 -0.87088737 -0.49094808 152.47121463  
Axis -0.92310331 0.32570680 -0.20443911  
Axis point 0.00000000 143.60249648 -3.29387895  
Rotation angle (degrees) 123.77830079  
Shift along axis -158.09409712  
  
Average map value = 0.4843 for 10778 atoms, 7876 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.4422, correlation about mean = 0.1914, overlap = 131.1  
steps = 76, shift = 0.0951, angle = 0.256 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.77264165 -0.29543569 0.56190982 190.84883175  
-0.63441683 -0.39172753 0.66638191 150.49643877  
0.02324259 -0.87135947 -0.49009433 152.42641288  
Axis -0.92398609 0.32367018 -0.20368435  
Axis point 0.00000000 143.46420820 -3.29010900  
Rotation angle (degrees) 123.68248730  
Shift along axis -158.67733240  
  
Average map value = 0.4839 for 10778 atoms, 7874 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.4422, correlation about mean = 0.1913, overlap = 131.1  
steps = 44, shift = 0.0513, angle = 0.261 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.76980623 -0.29785606 0.56451762 190.60797453  
-0.63787415 -0.39045288 0.66382463 150.49314585  
0.02269339 -0.87110754 -0.49056769 152.43958809  
Axis -0.92305103 0.32583291 -0.20447421  
Axis point 0.00000000 143.66475323 -3.37466702  
Rotation angle (degrees) 123.75254581  
Shift along axis -158.07523244  
  
Average map value = 0.4842 for 10778 atoms, 7872 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.4422, correlation about mean = 0.1913, overlap = 131.2  
steps = 48, shift = 0.0539, angle = 0.0361 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.76988041 -0.29820070 0.56423445 190.54895202  
-0.63780635 -0.39010088 0.66409668 150.51826115  
0.02207432 -0.87114733 -0.49052527 152.41895338  
Axis -0.92306479 0.32597355 -0.20418775  
Axis point 0.00000000 143.70694765 -3.36903897  
Rotation angle (degrees) 123.73640159  
Shift along axis -157.94614081  
  
Average map value = 0.4842 for 10778 atoms, 7875 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.4422, correlation about mean = 0.1915, overlap = 131.1  
steps = 60, shift = 0.0938, angle = 0.332 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.77345635 -0.29501380 0.56100993 190.87165630  
-0.63342471 -0.39215208 0.66707564 150.47276097  
0.02320475 -0.87131144 -0.49018149 152.42432235  
Axis -0.92426195 0.32311300 -0.20331706  
Axis point 0.00000000 143.39594818 -3.22252342  
Rotation angle (degrees) 123.67205698  
Shift along axis -158.78616901  
  
Average map value = 0.4839 for 10778 atoms, 7876 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.4422, correlation about mean = 0.1915, overlap = 131  
steps = 48, shift = 0.0896, angle = 0.196 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.77546666 -0.29277552 0.55940502 191.10941090  
-0.63093815 -0.39278795 0.66905508 150.51372029  
0.02384466 -0.87177988 -0.48931714 152.39506891  
Axis -0.92490504 0.32147666 -0.20298626  
Axis point 0.00000000 143.27389103 -3.25320669  
Rotation angle (degrees) 123.59502519  
Shift along axis -159.30551379  
  
Average map value = 0.4835 for 10778 atoms, 7873 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.4422, correlation about mean = 0.1914, overlap = 131  
steps = 48, shift = 0.0343, angle = 0.264 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.77261405 -0.29519300 0.56207530 190.88134944  
-0.63444259 -0.39170001 0.66637357 150.49529786  
0.02345614 -0.87145408 -0.48991589 152.40714114  
Axis -0.92397194 0.32361819 -0.20383110  
Axis point 0.00000000 143.45397195 -3.32957451  
Rotation angle (degrees) 123.67634730  
Shift along axis -158.73131115  
  
Average map value = 0.4838 for 10778 atoms, 7871 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.4422, correlation about mean = 0.1913, overlap = 131.1  
steps = 48, shift = 0.0803, angle = 0.243 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.77001168 -0.29766446 0.56433847 190.62452376  
-0.63762309 -0.39058810 0.66398627 150.49058518  
0.02277883 -0.87111241 -0.49055507 152.44186430  
Axis -0.92312044 0.32566296 -0.20443165  
Axis point 0.00000000 143.64549824 -3.36457809  
Rotation angle (degrees) 123.74969123  
Shift along axis -158.12412693  
  
Average map value = 0.4842 for 10778 atoms, 7871 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.4422, correlation about mean = 0.1913, overlap = 131.2  
steps = 48, shift = 0.0568, angle = 0.0265 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.76994692 -0.29780031 0.56435515 190.59089798  
-0.63769430 -0.39093661 0.66371272 150.43131255  
0.02297329 -0.87090962 -0.49090594 152.47217689  
Axis -0.92311756 0.32565608 -0.20445559  
Axis point 0.00000000 143.59797404 -3.29850111  
Rotation angle (degrees) 123.77602336  
Shift along axis -158.12272145  
  
Average map value = 0.4843 for 10778 atoms, 7877 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.4422, correlation about mean = 0.1913, overlap = 131.1  
steps = 60, shift = 0.042, angle = 0.118 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.77120990 -0.29670499 0.56320641 190.71419500  
-0.63616481 -0.39120601 0.66502046 150.46263057  
0.02301489 -0.87116246 -0.49045517 152.44563119  
Axis -0.92352014 0.32475153 -0.20407594  
Axis point 0.00000000 143.54321641 -3.30405440  
Rotation angle (degrees) 123.72625852  
Shift along axis -158.37591778  
  
Average map value = 0.4841 for 10778 atoms, 7872 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.4422, correlation about mean = 0.1913, overlap = 131.2  
steps = 28, shift = 0.0774, angle = 0.192 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.76918945 -0.29879027 0.56486458 190.48956597  
-0.63862925 -0.39037520 0.66314397 150.45650798  
0.02236820 -0.87082238 -0.49108863 152.45726981  
Axis -0.92286362 0.32637624 -0.20445366  
Axis point 0.00000000 143.68756638 -3.31591143  
Rotation angle (degrees) 123.78907786  
Shift along axis -157.86090711  
  
Average map value = 0.4844 for 10778 atoms, 7874 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.4422, correlation about mean = 0.1915, overlap = 131.1  
steps = 84, shift = 0.0951, angle = 0.413 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.77366663 -0.29488243 0.56078901 190.88702623  
-0.63316593 -0.39232113 0.66722190 150.46740653  
0.02325741 -0.87127981 -0.49023521 152.42858096  
Axis -0.92433545 0.32295025 -0.20324152  
Axis point 0.00000000 143.37554689 -3.20250441  
Rotation angle (degrees) 123.67248698  
Shift along axis -158.82997575  
  
Average map value = 0.4839 for 10778 atoms, 7875 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.4422, correlation about mean = 0.1916, overlap = 131  
steps = 44, shift = 0.0496, angle = 0.212 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.77594100 -0.29286073 0.55870222 191.08811336  
-0.63036507 -0.39308293 0.66942193 150.50081092  
0.02356896 -0.87161828 -0.48961828 152.39627515  
Axis -0.92507317 0.32123589 -0.20260095  
Axis point 0.00000000 143.24192442 -3.17551548  
Rotation angle (degrees) 123.59921316  
Shift along axis -159.29985357  
  
Average map value = 0.4836 for 10778 atoms, 7869 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.4422, correlation about mean = 0.1915, overlap = 131  
steps = 64, shift = 0.0475, angle = 0.123 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.77466009 -0.29403405 0.55986225 190.96541435  
-0.63193897 -0.39292035 0.66803201 150.45147015  
0.02355717 -0.87129650 -0.49019123 152.43190911  
Axis -0.92467005 0.32215686 -0.20297848  
Axis point 0.00000000 143.28573388 -3.15158551  
Rotation angle (degrees) 123.65740350  
Shift along axis -159.05142123  
  
Average map value = 0.4838 for 10778 atoms, 7875 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.4422, correlation about mean = 0.1915, overlap = 131.1  
steps = 64, shift = 0.0216, angle = 0.087 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.77372149 -0.29480247 0.56075536 190.89605961  
-0.63309823 -0.39231653 0.66728884 150.47139200  
0.02327524 -0.87130894 -0.49018259 152.42593799  
Axis -0.92435170 0.32290483 -0.20323977  
Axis point 0.00000000 143.37440707 -3.20854926  
Rotation angle (degrees) 123.66862872  
Shift along axis -158.84617084  
  
Average map value = 0.4839 for 10778 atoms, 7875 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.4422, correlation about mean = 0.1915, overlap = 131  
steps = 44, shift = 0.0823, angle = 0.185 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.77563623 -0.29274986 0.55918332 191.11856556  
-0.63072997 -0.39295166 0.66915523 150.50343141  
0.02383696 -0.87171472 -0.48943359 152.40028495  
Axis -0.92496683 0.32136237 -0.20288565  
Axis point 0.00000000 143.25581139 -3.22545077  
Rotation angle (degrees) 123.59882844  
Shift along axis -159.33202472  
  
Average map value = 0.4835 for 10778 atoms, 7872 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.4314, correlation about mean = 0.2021, overlap = 128.9  
steps = 100, shift = 1.92, angle = 2.82 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.26906502 -0.14243095 0.95253213 185.39965960  
-0.19445799 -0.97667031 -0.09111112 182.76344710  
0.94328688 -0.16071267 -0.29048458 216.25440595  
Axis -0.79646575 0.10579538 -0.59535674  
Axis point 0.00000000 104.56236075 35.95325959  
Rotation angle (degrees) 177.49572074  
Shift along axis -257.07746905  
  
Average map value = 0.4835 for 10778 atoms, 7928 outside contour  

> fitmap #11 inMap #10 resolution 17 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 17 in map
cryosparc_P12_J2768_004_volume_map.mrc using 1964 points  
correlation = 0.445, correlation about mean = 0.2261, overlap = 127.3  
steps = 80, shift = 2.9, angle = 3.06 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 17 (#2) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.64243805 0.36368561 0.67454142 209.65980011  
0.02173606 0.87121262 -0.49042444 240.37169293  
-0.76602925 0.32972922 0.55179508 181.00976629  
Axis 0.48455842 0.85110961 -0.20202865  
Axis point 286.94625660 0.00000000 34.95867633  
Rotation angle (degrees) 57.81038611  
Shift along axis 269.60592082  
  
Average map value = 0.4782 for 10778 atoms, 7818 outside contour  

> open /Users/francescappadoo/Downloads/cryosparc_P12_J2773_004_volume_map.mrc

Opened cryosparc_P12_J2773_004_volume_map.mrc as #12, grid size 128,128,128,
pixel 2.96, shown at level 0.117, step 1, values float32  

> select subtract #11

Nothing selected  

> tile

4 models tiled  

> hide #!10 models

> hide #11 models

> tile

2 models tiled  

> surface dust #12 size 29.6

> volume #12 level 0.2

> volume #12 level 0.5

> tile

2 models tiled  

> show #!10 models

> tile

3 models tiled  

> select add #10

2 models selected  

> view matrix models
> #10,0.29649,-0.95114,0.08615,941.77,-0.9454,-0.30508,-0.1146,558.04,0.13529,-0.047467,-0.98967,-53.69

> ui mousemode right "rotate selected models"

> view matrix models
> #10,-0.36498,-0.52841,0.76653,853.23,0.89444,-0.42751,0.13118,182.29,0.25839,0.7335,0.62866,-544.83

> view matrix models
> #10,-0.34315,-0.76369,0.54684,936.88,0.89822,-0.096558,0.4288,60.319,-0.27467,0.63832,0.7191,-443.44

> select subtract #10

Nothing selected  

> tile

3 models tiled  

> ui mousemode right "translate selected models"

> select add #10

2 models selected  

> view matrix models
> #10,-0.34315,-0.76369,0.54684,930.93,0.89822,-0.096558,0.4288,58.684,-0.27467,0.63832,0.7191,-438.61

> volume #12 level 0.5

> volume #10 level 0.791

> volume #10 level 0.4142

> tile

3 models tiled  

> tile

3 models tiled  

> select subtract #10

Nothing selected  

> tile

3 models tiled  

> tile

3 models tiled  

> tile

3 models tiled  

> hide #!12 models

> tile

2 models tiled  

> show #!3 models

> tile

3 models tiled  

> transparency #3.1#10.1 0

> transparency #3.1#10.1 50

> scalebar off

> scalebar 50

> tile

3 models tiled  

> scalebar off

> scalebar 50

> select add #3

2 models selected  

> view matrix models
> #3,-0.25103,-0.42142,-0.87143,442.75,0.626,-0.75734,0.18592,82.073,-0.73832,-0.49884,0.45392,241.96

> ui mousemode right "rotate selected models"

> view matrix models
> #3,0.62326,-0.080194,0.77789,-109.75,-0.7775,-0.17025,0.6054,146.98,0.083885,-0.98213,-0.16846,304.87

> scalebar off

> scalebar 50

> select subtract #3

Nothing selected  

> save /Users/francescappadoo/Desktop/image20.png supersample 3

> select add #3

2 models selected  

> view matrix models
> #3,-0.0063732,-0.51704,-0.85594,412.77,0.90355,-0.36971,0.2166,-51.295,-0.42843,-0.772,0.46953,234.44

> ui mousemode right "translate selected models"

> view matrix models
> #3,-0.0063732,-0.51704,-0.85594,551.25,0.90355,-0.36971,0.2166,4.4364,-0.42843,-0.772,0.46953,171.8

> fitmap #3 inMap #10

Fit map cryosparc_P12_J2741_004_volume_map_sharp.mrc in map
cryosparc_P12_J2768_004_volume_map.mrc using 5172 points  
correlation = 0.7821, correlation about mean = 0.5863, overlap = 3664  
steps = 64, shift = 4.27, angle = 11.9 degrees  
  
Position of cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99878244 0.02127691 0.04450727 -10.28520065  
-0.03060942 0.97481934 0.22088525 -30.37055245  
-0.03868679 -0.22197863 0.97428374 60.65782921  
Axis -0.97635765 0.18341337 -0.11439092  
Axis point 0.00000000 252.95623138 164.28289173  
Rotation angle (degrees) 13.10838751  
Shift along axis -2.46703603  
  

> scalebar off

> scalebar 50

> tile

3 models tiled  

> open
> /Users/francescappadoo/Downloads/rnacomposer-2024-07-03-103043/Kendall_Fran_SHAPE_MaP.pdb

Chain information for Kendall_Fran_SHAPE_MaP.pdb #13  
---  
Chain | Description  
A | No description available  
  

> hide #13 models

> show #13 models

> tile

4 models tiled  

> hide #!3 models

> tile

3 models tiled  

> fitmap #13 inMap #10 search 50

Found 45 unique fits from 50 random placements having fraction of points
inside contour >= 0.100 (50 of 50).  
  
Average map values and times found:  
0.5647 (1), 0.5443 (1), 0.5439 (1), 0.543 (1), 0.5394 (1), 0.5355 (1), 0.519
(1), 0.5069 (1), 0.503 (2), 0.503 (3), 0.5029 (1), 0.4963 (2), 0.4848 (1),
0.4819 (1), 0.481 (1), 0.4797 (1), 0.4797 (1), 0.4627 (2), 0.4596 (1), 0.4552
(1), 0.4517 (1), 0.4491 (1), 0.4474 (1), 0.4417 (1), 0.4389 (1), 0.4379 (1),
0.4331 (1), 0.4313 (1), 0.4307 (1), 0.4299 (1), 0.4247 (1), 0.4243 (1), 0.4066
(1), 0.4023 (1), 0.4021 (1), 0.3929 (1), 0.3805 (1), 0.3787 (1), 0.3681 (1),
0.365 (1), 0.3646 (1), 0.3587 (1), 0.3498 (1), 0.3292 (1), 0.3138 (1)  
  
Best fit found:  
Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5647, steps = 416  
shifted from previous position = 52.2  
rotated from previous position = 79.1 degrees  
atoms outside contour = 7436, contour level = 0.41421  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.42358156 0.04446216 0.90476609 186.25914829  
0.68046249 -0.67491910 -0.28540308 174.18605245  
0.59795435 0.73655089 -0.31613815 231.92713127  
Axis 0.82270775 0.24699391 0.51200193  
Axis point 0.00000000 44.18438715 78.40138422  
Rotation angle (degrees) 141.60409636  
Shift along axis 315.00687577  
  
Found 45 fits.  

> ui tool show "Fit in Map"

> ui tool show "Volume Viewer"

> ui mousemode right "rotate selected models"

[Repeated 1 time(s)]

> view matrix models
> #3,-0.54144,-0.36276,-0.75845,598.6,0.711,-0.67901,-0.1828,177.68,-0.44869,-0.63824,0.62557,120.81

Drag select of 10 cryosparc_P12_J2768_004_volume_map.mrc , 17 residues, 12
shapes  

> ui mousemode right "rotate selected models"

[Repeated 2 time(s)]

> tile

3 models tiled  

> select #13:63-68.

Expected an objects specifier or a keyword  

> select #13:63-68

189 atoms, 203 bonds, 6 residues, 1 model selected  

> color sel magenta

> select clear

> fitmap #11 inMap #3

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#11) to map
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) using 10778 atoms  
average map value = 0, steps = 24  
shifted from previous position = 0  
rotated from previous position = 0 degrees  
atoms outside contour = 10778, contour level = 0.2754  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#11) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
-0.80903330 0.05748218 -0.58494521 160.06230711  
-0.21902580 0.89404195 0.39078989 329.31211276  
0.54542895 0.44428012 -0.71071966 -312.79919237  
Axis 0.04591709 -0.97033594 -0.23736002  
Axis point 148.96047146 0.00000000 -168.36839437  
Rotation angle (degrees) 144.37586887  
Shift along axis -237.94776113  
  

> fitmap #11 inMap #3

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#11) to map
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) using 10778 atoms  
average map value = 0, steps = 24  
shifted from previous position = 0  
rotated from previous position = 0 degrees  
atoms outside contour = 10778, contour level = 0.2754  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#11) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
-0.80903330 0.05748218 -0.58494521 160.06230711  
-0.21902580 0.89404195 0.39078989 329.31211276  
0.54542895 0.44428012 -0.71071966 -312.79919237  
Axis 0.04591709 -0.97033594 -0.23736002  
Axis point 148.96047146 0.00000000 -168.36839437  
Rotation angle (degrees) 144.37586887  
Shift along axis -237.94776113  
  

> ~tile

[Repeated 2 time(s)]

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0, steps = 24  
shifted from previous position = 0  
rotated from previous position = 0 degrees  
atoms outside contour = 10778, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
1.00000000 0.00000000 0.00000000 -0.00000000  
-0.00000000 1.00000000 0.00000000 0.00000000  
0.00000000 0.00000000 1.00000000 0.00000000  
Axis 0.38480103 0.01202503 -0.92292121  
Axis point 5.23219290 -60.69401641 0.00000000  
Rotation angle (degrees) 0.00000000  
Shift along axis -0.00000000  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0, steps = 24  
shifted from previous position = 0  
rotated from previous position = 0 degrees  
atoms outside contour = 10778, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
1.00000000 0.00000000 0.00000000 -0.00000000  
-0.00000000 1.00000000 -0.00000000 0.00000000  
0.00000000 0.00000000 1.00000000 0.00000000  
Axis 0.30212805 0.11329802 -0.94651054  
Axis point 37.84921264 -19.21552297 0.00000000  
Rotation angle (degrees) 0.00000000  
Shift along axis -0.00000000  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0, steps = 24  
shifted from previous position = 0  
rotated from previous position = 0 degrees  
atoms outside contour = 10778, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
1.00000000 0.00000000 0.00000000 -0.00000000  
-0.00000000 1.00000000 -0.00000000 0.00000000  
0.00000000 0.00000000 1.00000000 0.00000000  
Axis 0.26357096 0.09883911 -0.95956302  
Axis point 55.18454281 -76.84118425 0.00000000  
Rotation angle (degrees) 0.00000000  
Shift along axis -0.00000000  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0, steps = 24  
shifted from previous position = 0  
rotated from previous position = 0 degrees  
atoms outside contour = 10778, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
1.00000000 0.00000000 0.00000000 -0.00000000  
-0.00000000 1.00000000 -0.00000000 0.00000000  
0.00000000 0.00000000 1.00000000 0.00000000  
Axis 0.28280888 0.11489111 -0.95227053  
Axis point 71.48470647 -23.90666993 0.00000000  
Rotation angle (degrees) 0.00000000  
Shift along axis -0.00000000  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0, steps = 24  
shifted from previous position = 0  
rotated from previous position = 0 degrees  
atoms outside contour = 10778, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
1.00000000 0.00000000 0.00000000 -0.00000000  
-0.00000000 1.00000000 -0.00000000 0.00000000  
-0.00000000 0.00000000 1.00000000 0.00000000  
Axis 0.26572206 0.11625340 -0.95701460  
Axis point 67.65645128 -12.48279661 0.00000000  
Rotation angle (degrees) 0.00000000  
Shift along axis -0.00000000  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0, steps = 24  
shifted from previous position = 0  
rotated from previous position = 0 degrees  
atoms outside contour = 10778, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
1.00000000 0.00000000 0.00000000 -0.00000000  
-0.00000000 1.00000000 -0.00000000 0.00000000  
-0.00000000 0.00000000 1.00000000 0.00000000  
Axis 0.30421656 0.16161505 -0.93879330  
Axis point 108.84923599 -38.97875546 0.00000000  
Rotation angle (degrees) 0.00000000  
Shift along axis -0.00000000  
  

> fitmap #13 inMap #10 search 50

Found 44 unique fits from 50 random placements having fraction of points
inside contour >= 0.100 (50 of 50).  
  
Average map values and times found:  
0.5647 (2), 0.5477 (1), 0.543 (1), 0.5394 (1), 0.5327 (1), 0.5316 (1), 0.5307
(1), 0.5081 (1), 0.5069 (1), 0.5063 (1), 0.504 (2), 0.4996 (3), 0.497 (1),
0.4907 (1), 0.4903 (2), 0.4893 (2), 0.4831 (1), 0.4819 (1), 0.4767 (1), 0.4716
(1), 0.4585 (1), 0.4581 (1), 0.456 (1), 0.4555 (1), 0.4518 (1), 0.4343 (1),
0.432 (1), 0.4302 (1), 0.4244 (1), 0.419 (1), 0.4171 (1), 0.4157 (1), 0.4096
(1), 0.3927 (1), 0.3705 (1), 0.367 (1), 0.3637 (1), 0.3564 (1), 0.3381 (1),
0.3379 (1), 0.2905 (1), 0.288 (1), 0.2754 (1), 0.2397 (1)  
  
Best fit found:  
Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5647, steps = 328  
shifted from previous position = 68.8  
rotated from previous position = 9.28 degrees  
atoms outside contour = 7437, contour level = 0.41421  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.42284866 0.04480744 0.90509186 186.30457145  
0.68094707 -0.67471539 -0.28472829 174.19587242  
0.59792151 0.73671664 -0.31581400 231.95224663  
Axis 0.82246929 0.24733411 0.51222076  
Axis point 0.00000000 44.15756961 78.33191516  
Rotation angle (degrees) 141.61355435  
Shift along axis 315.12512638  
  
Found 44 fits.  

> ui mousemode right "translate selected models"

> ui mousemode right "move picked models"

Drag select of 4 residues, 10 shapes  

> select down

259 atoms, 8 residues, 1 model selected  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5316, steps = 60  
shifted from previous position = 0.00582  
rotated from previous position = 0.00566 degrees  
atoms outside contour = 7721, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99808326 0.05311813 -0.03175201 226.92702963  
0.06131366 -0.77924082 0.62371814 154.50867058  
0.00838829 -0.62446953 -0.78100412 173.55391971  
Axis -0.99946178 -0.03214156 0.00656241  
Axis point 0.00000000 104.31048531 61.72287957  
Rotation angle (degrees) 141.35964272  
Shift along axis -230.63211161  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5316, steps = 64  
shifted from previous position = 0.0103  
rotated from previous position = 0.0218 degrees  
atoms outside contour = 7721, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99810240 0.05296075 -0.03141144 226.91693916  
0.06097752 -0.77921889 0.62377849 154.48945572  
0.00855940 -0.62451025 -0.78096970 173.55583236  
Axis -0.99946715 -0.03200345 0.00641879  
Axis point 0.00000000 104.31406449 61.70288635  
Rotation angle (degrees) 141.35617979  
Shift along axis -230.62620242  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5316, steps = 44  
shifted from previous position = 0.0436  
rotated from previous position = 0.0501 degrees  
atoms outside contour = 7718, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99805278 0.05359003 -0.03191698 226.91409065  
0.06178185 -0.77896902 0.62401138 154.54600038  
0.00857846 -0.62476824 -0.78076312 173.53205624  
Axis -0.99945314 -0.03241028 0.00655627  
Axis point 0.00000000 104.31402254 61.69952926  
Rotation angle (degrees) 141.33752068  
Shift along axis -230.66115721  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5316, steps = 80  
shifted from previous position = 0.0385  
rotated from previous position = 0.0344 degrees  
atoms outside contour = 7721, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99808246 0.05313601 -0.03174735 226.92914387  
0.06132435 -0.77921343 0.62375131 154.51177420  
0.00840571 -0.62450219 -0.78097782 173.55188085  
Axis -0.99946155 -0.03215007 0.00655631  
Axis point 0.00000000 104.31252674 61.71924413  
Rotation angle (degrees) 141.35721653  
Shift along axis -230.63665841  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5316, steps = 48  
shifted from previous position = 0.0503  
rotated from previous position = 0.0332 degrees  
atoms outside contour = 7720, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99808679 0.05329874 -0.03133574 226.88820697  
0.06119110 -0.77898752 0.62404650 154.49610114  
0.00885076 -0.62477009 -0.78075859 173.57408552  
Axis -0.99946270 -0.03216237 0.00631647  
Axis point 0.00000000 104.31580601 61.69141314  
Rotation angle (degrees) 141.33660161  
Shift along axis -230.63888438  
  
Opened Kendall_Fran_SHAPE_MaP.pdb map 15 as #15, grid size 44,50,38, pixel 5,
shown at level 0.0344, step 1, values float32  
Opened Kendall_Fran_SHAPE_MaP.pdb map 15 as #16, grid size 44,50,38, pixel 5,
shown at level 0.0344, step 1, values float32  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4553, correlation about mean = 0.2032, overlap = 208.1  
steps = 64, shift = 0.459, angle = 1.58 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#16) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99667621 0.07851679 -0.02171571 227.52018001  
0.07470363 -0.77456548 0.62806658 154.57501506  
0.03249355 -0.62760132 -0.77785651 174.27583736  
Axis -0.99906481 -0.04313128 -0.00303392  
Axis point 0.00000000 103.07975871 61.23743975  
Rotation angle (degrees) 141.06622988  
Shift along axis -234.50316248  
  
Average map value = 0.5293 for 10778 atoms, 7660 outside contour  

> fitmap #13 inMap #10 search 50 resolution 15

Found 44 unique fits from 50 random placements having fraction of points
inside contour >= 0.100 (50 of 50).  
  
Correlations and times found:  
0.4819 (1), 0.4674 (1), 0.4673 (2), 0.4643 (1), 0.4572 (1), 0.4555 (2), 0.4473
(1), 0.447 (1), 0.4461 (1), 0.4374 (1), 0.4373 (1), 0.4355 (1), 0.4324 (1),
0.4311 (1), 0.4243 (1), 0.4239 (1), 0.4237 (1), 0.422 (1), 0.4218 (1), 0.4197
(1), 0.4196 (2), 0.4191 (3), 0.417 (1), 0.4144 (1), 0.4127 (1), 0.4123 (1),
0.4103 (1), 0.409 (1), 0.4078 (1), 0.4069 (1), 0.4045 (1), 0.4012 (1), 0.3991
(1), 0.3976 (1), 0.3952 (1), 0.3932 (1), 0.3851 (1), 0.3844 (1), 0.3743 (1),
0.3737 (2), 0.3532 (1), 0.3465 (1), 0.3113 (1), 0.2917 (1)  
  
Best fit found:  
Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4819, correlation about mean = 0.2294, overlap = 224.8  
steps = 116, shift = 16.2, angle = 37.4 degrees  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.43025691 0.03150116 0.90215666 185.84094185  
0.67333708 -0.67684130 -0.29749453 174.47378155  
0.60124549 0.73545463 -0.31242657 231.80816919  
Axis 0.82451846 0.24019267 0.51232489  
Axis point 0.00000000 45.01425311 79.31605692  
Rotation angle (degrees) 141.21531976  
Shift along axis 313.89770550  
  
Found 44 fits.  

> select down

259 atoms, 8 residues, 1 model selected  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4336, correlation about mean = 0.1603, overlap = 193.6  
steps = 52, shift = 2.45, angle = 2.13 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.73627787 -0.31803485 0.59728446 187.78956106  
-0.67654437 -0.36360354 0.64037509 151.12899856  
0.01351317 -0.87558345 -0.48287792 151.07131278  
Axis -0.91127104 0.35091584 -0.21550678  
Axis point 0.00000000 146.52968517 -6.53719177  
Rotation angle (degrees) 123.71772480  
Shift along axis -150.65052018  
  
Average map value = 0.4814 for 10778 atoms, 7916 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4336, correlation about mean = 0.1602, overlap = 193.6  
steps = 36, shift = 0.0213, angle = 0.0842 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.73530763 -0.31881637 0.59806255 187.70547872  
-0.67760244 -0.36318605 0.63949269 151.12801209  
0.01332727 -0.87547250 -0.48308422 151.07578743  
Axis -0.91095144 0.35160243 -0.21573874  
Axis point 0.00000000 146.59350465 -6.55386102  
Rotation angle (degrees) 123.74387170  
Shift along axis -150.44649977  
  
Average map value = 0.4813 for 10778 atoms, 7917 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4336, correlation about mean = 0.1603, overlap = 193.5  
steps = 40, shift = 0.0304, angle = 0.106 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.73648615 -0.31765406 0.59723031 187.81649224  
-0.67631167 -0.36379503 0.64051211 151.11961311  
0.01380817 -0.87564214 -0.48276314 151.07156202  
Axis -0.91134059 0.35068746 -0.21558442  
Axis point 0.00000000 146.49566057 -6.54380212  
Rotation angle (degrees) 123.71319385  
Shift along axis -150.73771472  
  
Average map value = 0.4814 for 10778 atoms, 7918 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4336, correlation about mean = 0.1603, overlap = 193.6  
steps = 28, shift = 0.0543, angle = 0.0614 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.73587489 -0.31847631 0.59754581 187.71319078  
-0.67698522 -0.36348953 0.63997378 151.11687417  
0.01338518 -0.87547032 -0.48308656 151.07732699  
Axis -0.91114375 0.35122002 -0.21554946  
Axis point 0.00000000 146.54558251 -6.51623496  
Rotation angle (degrees) 123.73486548  
Shift along axis -150.52306516  
  
Average map value = 0.4814 for 10778 atoms, 7921 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4336, correlation about mean = 0.1603, overlap = 193.6  
steps = 44, shift = 0.0512, angle = 0.0668 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.73659630 -0.31768974 0.59707547 187.81718047  
-0.67619391 -0.36380829 0.64062891 151.12211223  
0.01369980 -0.87562369 -0.48279970 151.07342801  
Axis -0.91137765 0.35065104 -0.21548698  
Axis point 0.00000000 146.49691423 -6.53108775  
Rotation angle (degrees) 123.71111604  
Shift along axis -150.73561033  
  
Average map value = 0.4814 for 10778 atoms, 7918 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4336, correlation about mean = 0.1603, overlap = 193.5  
steps = 40, shift = 0.00817, angle = 0.00964 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.73664236 -0.31754435 0.59709599 187.82807726  
-0.67614075 -0.36389029 0.64063845 151.11706223  
0.01384634 -0.87564235 -0.48276166 151.07050637  
Axis -0.91139383 0.35057500 -0.21554223  
Axis point 0.00000000 146.48199336 -6.53681111  
Rotation angle (degrees) 123.71104361  
Shift along axis -150.76956168  
  
Average map value = 0.4814 for 10778 atoms, 7917 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4336, correlation about mean = 0.1603, overlap = 193.6  
steps = 28, shift = 0.066, angle = 0.0919 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.73568276 -0.31869538 0.59766558 187.68931644  
-0.67719575 -0.36340825 0.63979717 151.11624241  
0.01329623 -0.87542434 -0.48317233 151.07867023  
Axis -0.91108185 0.35137325 -0.21556134  
Axis point 0.00000000 146.55962081 -6.51202200  
Rotation angle (degrees) 123.74163902  
Shift along axis -150.46884643  
  
Average map value = 0.4813 for 10778 atoms, 7921 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4336, correlation about mean = 0.1603, overlap = 193.6  
steps = 40, shift = 0.0119, angle = 0.0671 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.73647381 -0.31825210 0.59692708 187.74502013  
-0.67633444 -0.36382210 0.64047269 151.11005085  
0.01334351 -0.87541371 -0.48319029 151.07951403  
Axis -0.91135018 0.35085016 -0.21527893  
Axis point 0.00000000 146.50539881 -6.46997050  
Rotation angle (degrees) 123.72926368  
Shift along axis -150.60870853  
  
Average map value = 0.4814 for 10778 atoms, 7920 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4336, correlation about mean = 0.1604, overlap = 193.6  
steps = 44, shift = 0.00997, angle = 0.0255 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.73675689 -0.31797297 0.59672646 187.75637225  
-0.67602366 -0.36397573 0.64071347 151.10494295  
0.01346441 -0.87545128 -0.48311887 151.08015725  
Axis -0.91144404 0.35062860 -0.21524255  
Axis point 0.00000000 146.47809853 -6.46214978  
Rotation angle (degrees) 123.72234426  
Shift along axis -150.66658945  
  
Average map value = 0.4814 for 10778 atoms, 7921 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4336, correlation about mean = 0.1603, overlap = 193.5  
steps = 44, shift = 0.0743, angle = 0.0382 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.73692687 -0.31734263 0.59685211 187.85537606  
-0.67582987 -0.36402039 0.64089251 151.11628486  
0.01388385 -0.87566141 -0.48272602 151.07287370  
Axis -0.91148853 0.35037916 -0.21546020  
Axis point 0.00000000 146.46457227 -6.52743834  
Rotation angle (degrees) 123.70449866  
Shift along axis -150.83021625  
  
Average map value = 0.4814 for 10778 atoms, 7915 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4336, correlation about mean = 0.1603, overlap = 193.6  
steps = 44, shift = 0.0757, angle = 0.0745 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.73627318 -0.31843983 0.59707443 187.72116666  
-0.67655319 -0.36379025 0.64025971 151.10363443  
0.01332569 -0.87535867 -0.48329048 151.08252826  
Axis -0.91128745 0.35098736 -0.21532083  
Axis point 0.00000000 146.51172206 -6.46351587  
Rotation angle (degrees) 123.73852907  
Shift along axis -150.56369165  
  
Average map value = 0.4814 for 10778 atoms, 7919 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4336, correlation about mean = 0.1604, overlap = 193.6  
steps = 40, shift = 0.0286, angle = 0.06 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.73692848 -0.31777103 0.59662216 187.79573854  
-0.67583587 -0.36398700 0.64090515 151.11255955  
0.01350165 -0.87551992 -0.48299343 151.07299732  
Axis -0.91149603 0.35050333 -0.21522638  
Axis point 0.00000000 146.47467228 -6.47904509  
Rotation angle (degrees) 123.71250255  
Shift along axis -150.72451093  
  
Average map value = 0.4814 for 10778 atoms, 7919 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4336, correlation about mean = 0.1603, overlap = 193.5  
steps = 48, shift = 0.0419, angle = 0.0304 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.73674725 -0.31745965 0.59701161 187.83840647  
-0.67602691 -0.36388000 0.64076441 151.12176707  
0.01382376 -0.87567734 -0.48269885 151.07134650  
Axis -0.91142552 0.35051283 -0.21550933  
Axis point 0.00000000 146.48247879 -6.53958243  
Rotation angle (degrees) 123.70491410  
Shift along axis -150.78788505  
  
Average map value = 0.4814 for 10778 atoms, 7918 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4336, correlation about mean = 0.1603, overlap = 193.6  
steps = 36, shift = 0.0124, angle = 0.0395 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.73628708 -0.31779179 0.59740247 187.79800374  
-0.67652973 -0.36364936 0.64036454 151.12361183  
0.01374245 -0.87565267 -0.48274591 151.07431668  
Axis -0.91127143 0.35083553 -0.21563583  
Axis point 0.00000000 146.51523211 -6.55326439  
Rotation angle (degrees) 123.71443917  
Shift along axis -150.69245926  
  
Average map value = 0.4814 for 10778 atoms, 7917 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4336, correlation about mean = 0.1603, overlap = 193.6  
steps = 44, shift = 0.0542, angle = 0.0406 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.73635143 -0.31837622 0.59701186 187.73012438  
-0.67646914 -0.36373072 0.64038233 151.11222304  
0.01326907 -0.87540655 -0.48320532 151.07653162  
Axis -0.91130838 0.35095237 -0.21528927  
Axis point 0.00000000 146.51722722 -6.47391077  
Rotation angle (degrees) 123.73084908  
Shift along axis -150.57200005  
  
Average map value = 0.4814 for 10778 atoms, 7920 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4336, correlation about mean = 0.1603, overlap = 193.5  
steps = 44, shift = 0.0645, angle = 0.0479 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.73662624 -0.31759271 0.59709015 187.82829449  
-0.67616009 -0.36381181 0.64066260 151.12350913  
0.01375870 -0.87565742 -0.48273684 151.07204354  
Axis -0.91138554 0.35061190 -0.21551725  
Axis point 0.00000000 146.49425512 -6.54023692  
Rotation angle (degrees) 123.70804112  
Shift along axis -150.75692254  
  
Average map value = 0.4814 for 10778 atoms, 7918 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4239, correlation about mean = 0.1689, overlap = 185.4  
steps = 68, shift = 0.625, angle = 2.15 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.74634262 -0.45225469 0.48830153 144.04440579  
-0.56060131 0.03171148 -0.82747840 193.15425012  
0.35874622 -0.89132488 -0.27720218 174.69206869  
Axis -0.35361327 0.71754116 -0.60007695  
Axis point 124.79785725 0.00000000 163.76446661  
Rotation angle (degrees) 174.82044143  
Shift along axis -17.16857084  
  
Average map value = 0.4632 for 10778 atoms, 8013 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4239, correlation about mean = 0.1689, overlap = 185.4  
steps = 84, shift = 0.00953, angle = 0.00346 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.74634416 -0.45221854 0.48833265 144.04671200  
-0.56060575 0.03166776 -0.82747707 193.14803377  
0.35873606 -0.89134478 -0.27715135 174.68221085  
Axis -0.35361044 0.71752543 -0.60009742  
Axis point 124.79960014 0.00000000 163.75987084  
Rotation angle (degrees) 174.81867298  
Shift along axis -17.17414043  
  
Average map value = 0.4632 for 10778 atoms, 8015 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4239, correlation about mean = 0.1687, overlap = 185.4  
steps = 48, shift = 0.0577, angle = 0.0439 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.74620034 -0.45202461 0.48873182 144.03443713  
-0.56068971 0.03094272 -0.82744761 193.07583810  
0.35890399 -0.89146860 -0.27653500 174.64210672  
Axis -0.35370143 0.71726927 -0.60034998  
Axis point 124.81403977 0.00000000 163.76343249  
Rotation angle (degrees) 174.80754372  
Shift along axis -17.30420682  
  
Average map value = 0.4631 for 10778 atoms, 8013 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4232, correlation about mean = 0.1703, overlap = 176.9  
steps = 52, shift = 0.651, angle = 2.04 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.30284573 0.63895092 -0.70712527 226.87703411  
0.94881014 0.13231360 -0.28679673 229.85956770  
-0.08968676 -0.75778279 -0.64631374 184.40566180  
Axis -0.56330998 -0.73847040 0.37059862  
Axis point -14.17989783 0.00000000 164.37988785  
Rotation angle (degrees) 155.28831719  
Shift along axis -229.20610088  
  
Average map value = 0.4474 for 10778 atoms, 8068 outside contour  

> select down

259 atoms, 8 residues, 1 model selected  

> fitmap #13 inMap #10 search 200 resolution 15

Found 113 unique fits from 200 random placements having fraction of points
inside contour >= 0.100 (199 of 200).  
  
Correlations and times found:  
0.4818 (3), 0.4674 (3), 0.4673 (2), 0.4642 (6), 0.4632 (1), 0.4618 (2), 0.4603
(2), 0.4597 (3), 0.4572 (5), 0.4572 (2), 0.4555 (1), 0.4552 (3), 0.4515 (1),
0.45 (3), 0.4473 (3), 0.447 (4), 0.4416 (6), 0.4411 (1), 0.44 (2), 0.4396 (6),
0.4375 (1), 0.4373 (1), 0.4365 (1), 0.4359 (1), 0.4354 (3), 0.435 (3), 0.4349
(1), 0.4344 (1), 0.4342 (1), 0.4331 (1), 0.4316 (3), 0.4315 (1), 0.4311 (2),
0.4298 (2), 0.4244 (2), 0.4243 (1), 0.4238 (1), 0.4238 (1), 0.4211 (1), 0.4209
(1), 0.4203 (2), 0.4197 (1), 0.4191 (1), 0.4168 (1), 0.4163 (1), 0.4154 (3),
0.4152 (1), 0.4152 (2), 0.4143 (2), 0.4142 (1), 0.4142 (2), 0.4128 (3), 0.4123
(3), 0.4112 (2), 0.4104 (1), 0.4102 (3), 0.4097 (1), 0.4095 (1), 0.4094 (2),
0.4091 (2), 0.409 (1), 0.4086 (1), 0.4079 (3), 0.4075 (1), 0.4073 (3), 0.407
(1), 0.4069 (6), 0.4053 (2), 0.4045 (3), 0.4044 (1), 0.4041 (2), 0.4023 (2),
0.4012 (1), 0.3999 (1), 0.3992 (3), 0.3978 (1), 0.3976 (1), 0.3975 (1), 0.3973
(1), 0.3965 (1), 0.3953 (2), 0.3945 (2), 0.3939 (1), 0.3937 (1), 0.3936 (2),
0.3926 (1), 0.3906 (1), 0.3871 (1), 0.3861 (2), 0.3857 (1), 0.3852 (3), 0.3851
(1), 0.3843 (1), 0.3838 (1), 0.3801 (1), 0.3794 (1), 0.3785 (1), 0.3781 (1),
0.3762 (2), 0.3747 (1), 0.3743 (1), 0.3702 (1), 0.3687 (1), 0.3687 (1), 0.3667
(1), 0.3647 (1), 0.3642 (1), 0.3632 (1), 0.3572 (1), 0.3572 (1), 0.3258 (1),
0.3045 (1), 0.2903 (1)  
  
Best fit found:  
Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4818, correlation about mean = 0.2293, overlap = 224.8  
steps = 312, shift = 38.5, angle = 80.1 degrees  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.42974315 0.03184233 0.90238957 185.89346305  
0.67365314 -0.67677410 -0.29693139 174.48638300  
0.60125889 0.73550178 -0.31228972 231.83095547  
Axis 0.82436026 0.24044187 0.51246255  
Axis point 0.00000000 44.99841768 79.26089711  
Rotation angle (degrees) 141.22948677  
Shift along axis 314.00169833  
  
Found 113 fits.  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4821, correlation about mean = 0.2307, overlap = 224.8  
steps = 48, shift = 0.265, angle = 1.13 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.41389192 0.04019746 0.90943811 185.79210923  
0.68403797 -0.67291281 -0.28156773 174.47856525  
0.60065424 0.73862880 -0.30600977 231.86511271  
Axis 0.81926214 0.24796687 0.51703190  
Axis point 0.00000000 44.45253499 77.83124765  
Rotation angle (degrees) 141.49145677  
Shift along axis 315.35900325  
  
Average map value = 0.5642 for 10778 atoms, 7419 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4821, correlation about mean = 0.2307, overlap = 224.8  
steps = 56, shift = 0.0424, angle = 0.0957 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.41255411 0.04097854 0.91001094 185.81495611  
0.68454955 -0.67303264 -0.28003384 174.46994619  
0.60099168 0.73847668 -0.30571423 231.84535713  
Axis 0.81886954 0.24844756 0.51742293  
Axis point 0.00000000 44.43408372 77.68090357  
Rotation angle (degrees) 141.54495777  
Shift along axis 315.46694396  
  
Average map value = 0.5642 for 10778 atoms, 7415 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4561, correlation about mean = 0.2275, overlap = 208.4  
steps = 100, shift = 0.898, angle = 0.963 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.15560500 0.54498592 -0.82387954 233.65146427  
0.92291063 0.37755165 0.07543682 221.94783907  
0.35216909 -0.74862883 -0.56172218 186.42637228  
Axis -0.55495447 -0.79199205 0.25450765  
Axis point -31.69496999 0.00000000 154.27028639  
Rotation angle (degrees) 132.05840241  
Shift along axis -257.99990942  
  
Average map value = 0.5343 for 10778 atoms, 7746 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4561, correlation about mean = 0.2275, overlap = 208.4  
steps = 44, shift = 0.0042, angle = 0.0017 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.15560134 0.54500816 -0.82386552 233.64971159  
0.92290800 0.37755450 0.07545477 221.94989750  
0.35217760 -0.74861120 -0.56174034 186.42489581  
Axis -0.55495861 -0.79199394 0.25449270  
Axis point -31.69492092 0.00000000 154.26576571  
Rotation angle (degrees) 132.05885182  
Shift along axis -258.00511991  
  
Average map value = 0.5343 for 10778 atoms, 7746 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4561, correlation about mean = 0.2276, overlap = 208.4  
steps = 64, shift = 0.0598, angle = 0.0341 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.15506261 0.54491660 -0.82402764 233.70337727  
0.92291763 0.37743726 0.07592201 221.92379323  
0.35238990 -0.74873696 -0.56143951 186.46310094  
Axis -0.55511444 -0.79189870 0.25444922  
Axis point -31.75420804 0.00000000 154.29879255  
Rotation angle (degrees) 132.03098688  
Shift along axis -258.02789246  
  
Average map value = 0.5345 for 10778 atoms, 7745 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4561, correlation about mean = 0.2276, overlap = 208.4  
steps = 48, shift = 0.00471, angle = 0.0115 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.15491144 0.54482811 -0.82411458 233.70869249  
0.92291606 0.37741915 0.07603109 221.92239591  
0.35246051 -0.74881048 -0.56129712 186.45748300  
Axis -0.55514459 -0.79187243 0.25446521  
Axis point -31.77758312 0.00000000 154.30544100  
Rotation angle (degrees) 132.02036406  
Shift along axis -258.02940140  
  
Average map value = 0.5345 for 10778 atoms, 7744 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4553, correlation about mean = 0.2033, overlap = 208.1  
steps = 48, shift = 0.478, angle = 0.755 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99664726 0.07883869 -0.02188077 227.57300694  
0.07506398 -0.77466113 0.62790567 154.58414586  
0.03255305 -0.62744292 -0.77798180 174.26282844  
Axis -0.99905670 -0.04332062 -0.00300407  
Axis point 0.00000000 103.05101010 61.24894608  
Rotation angle (degrees) 141.07762382  
Shift along axis -234.57851728  
  
Average map value = 0.5294 for 10778 atoms, 7660 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4553, correlation about mean = 0.2033, overlap = 208.1  
steps = 44, shift = 0.0153, angle = 0.0398 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99667752 0.07850797 -0.02169041 227.57246917  
0.07466840 -0.77432707 0.62836472 154.57271347  
0.03253614 -0.62789658 -0.77761642 174.23775708  
Axis -0.99906503 -0.04312467 -0.00305349  
Axis point 0.00000000 103.08929279 61.20112417  
Rotation angle (degrees) 141.04436197  
Shift along axis -234.55762743  
  
Average map value = 0.5293 for 10778 atoms, 7656 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4553, correlation about mean = 0.2032, overlap = 208.1  
steps = 48, shift = 0.0669, angle = 0.0261 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99667214 0.07860229 -0.02159612 227.51472537  
0.07469678 -0.77459975 0.62802517 154.57334584  
0.03263584 -0.62754834 -0.77789329 174.28539816  
Axis -0.99906366 -0.04315254 -0.00310763  
Axis point 0.00000000 103.07235813 61.23749394  
Rotation angle (degrees) 141.06965540  
Shift along axis -234.51354097  
  
Average map value = 0.5293 for 10778 atoms, 7660 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4553, correlation about mean = 0.2033, overlap = 208.2  
steps = 48, shift = 0.0596, angle = 0.0428 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99668649 0.07827405 -0.02211936 227.56347262  
0.07475639 -0.77433093 0.62834950 154.58058276  
0.03205573 -0.62792102 -0.77761663 174.22788026  
Axis -0.99906756 -0.04308354 -0.00279747  
Axis point 0.00000000 103.10714168 61.22171308  
Rotation angle (degrees) 141.04413900  
Shift along axis -234.49855870  
  
Average map value = 0.5294 for 10778 atoms, 7656 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4553, correlation about mean = 0.2032, overlap = 208.1  
steps = 48, shift = 0.0626, angle = 0.0444 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99667299 0.07861263 -0.02151904 227.51215711  
0.07465434 -0.77456249 0.62807617 154.57061955  
0.03270685 -0.62759304 -0.77785425 174.28777675  
Axis -0.99906388 -0.04314443 -0.00314939  
Axis point 0.00000000 103.07365400 61.23161383  
Rotation angle (degrees) 141.06613819  
Shift along axis -234.51693885  
  
Average map value = 0.5293 for 10778 atoms, 7658 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4553, correlation about mean = 0.2033, overlap = 208.1  
steps = 44, shift = 0.0709, angle = 0.037 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99669033 0.07826592 -0.02197497 227.56816488  
0.07466125 -0.77437474 0.62830682 154.57535061  
0.03215812 -0.62786800 -0.77765521 174.22750671  
Axis -0.99906866 -0.04305346 -0.00286688  
Axis point 0.00000000 103.10181489 61.21595500  
Rotation angle (degrees) 141.04771872  
Shift along axis -234.51071495  
  
Average map value = 0.5294 for 10778 atoms, 7657 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4553, correlation about mean = 0.2032, overlap = 208.1  
steps = 48, shift = 0.0727, angle = 0.0318 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99667061 0.07860635 -0.02165157 227.51167420  
0.07473261 -0.77455577 0.62807515 154.57566470  
0.03260032 -0.62760212 -0.77785140 174.28502188  
Axis -0.99906321 -0.04316481 -0.00308209  
Axis point 0.00000000 103.07647230 61.23753323  
Rotation angle (degrees) 141.06581020  
Shift along axis -234.50793587  
  
Average map value = 0.5293 for 10778 atoms, 7659 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4553, correlation about mean = 0.2032, overlap = 208.1  
steps = 64, shift = 0.0146, angle = 0.00564 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99667823 0.07850876 -0.02165495 227.52039489  
0.07465911 -0.77456720 0.62806980 154.57241502  
0.03253574 -0.62760023 -0.77785563 174.27515256  
Axis -0.99906536 -0.04311646 -0.00306295  
Axis point 0.00000000 103.07884625 61.23363625  
Rotation angle (degrees) 141.06617661  
Shift along axis -234.50615564  
  
Average map value = 0.5293 for 10778 atoms, 7662 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4553, correlation about mean = 0.2032, overlap = 208.1  
steps = 48, shift = 0.0183, angle = 0.0123 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99667471 0.07859314 -0.02151027 227.50520714  
0.07463831 -0.77465297 0.62796648 154.56975178  
0.03269084 -0.62748380 -0.77794305 174.29271683  
Axis -0.99906441 -0.04313225 -0.00314718  
Axis point 0.00000000 103.06881050 61.23968326  
Rotation angle (degrees) 141.07423298  
Shift along axis -234.50782944  
  
Average map value = 0.5293 for 10778 atoms, 7661 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4553, correlation about mean = 0.2032, overlap = 208.1  
steps = 76, shift = 0.0191, angle = 0.0153 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99667757 0.07850030 -0.02171620 227.52183331  
0.07469069 -0.77455941 0.62807564 154.57462058  
0.03248361 -0.62761089 -0.77784920 174.27384784  
Axis -0.99906517 -0.04312314 -0.00303105  
Axis point 0.00000000 103.08078320 61.23603497  
Rotation angle (degrees) 141.06555897  
Shift along axis -234.50311300  
  
Average map value = 0.5293 for 10778 atoms, 7661 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4553, correlation about mean = 0.2033, overlap = 208.2  
steps = 48, shift = 0.0582, angle = 0.033 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99668797 0.07826789 -0.02207480 227.57079867  
0.07472262 -0.77431405 0.62837432 154.57801824  
0.03208868 -0.62794260 -0.77759784 174.22398838  
Axis -0.99906796 -0.04307272 -0.00281932  
Axis point 0.00000000 103.10676508 61.21615460  
Rotation angle (degrees) 141.04244679  
Shift along axis -234.50798402  
  
Average map value = 0.5294 for 10778 atoms, 7659 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4553, correlation about mean = 0.2033, overlap = 208.1  
steps = 40, shift = 0.0226, angle = 0.0184 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99668599 0.07836234 -0.02182741 227.55055365  
0.07464659 -0.77443442 0.62823500 154.57286020  
0.03232604 -0.62778235 -0.77771739 174.24655441  
Axis -0.99906747 -0.04307500 -0.00295560  
Axis point 0.00000000 103.09331129 61.22079392  
Rotation angle (degrees) 141.05346982  
Shift along axis -234.51158523  
  
Average map value = 0.5294 for 10778 atoms, 7662 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4553, correlation about mean = 0.2032, overlap = 208.1  
steps = 60, shift = 0.0341, angle = 0.0255 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99667829 0.07853585 -0.02155385 227.52232882  
0.07461978 -0.77462929 0.62799789 154.56873140  
0.03262408 -0.62752019 -0.77791650 174.28055273  
Axis -0.99906541 -0.04311152 -0.00311617  
Axis point 0.00000000 103.07148804 61.23477652  
Rotation angle (degrees) 141.07177968  
Shift along axis -234.51646871  
  
Average map value = 0.5293 for 10778 atoms, 7663 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4553, correlation about mean = 0.2033, overlap = 208.2  
steps = 48, shift = 0.0586, angle = 0.0456 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99668786 0.07825231 -0.02213475 227.57300258  
0.07474888 -0.77432629 0.62835611 154.57957322  
0.03203077 -0.62792944 -0.77761086 174.22292363  
Axis -0.99906794 -0.04307543 -0.00278612  
Axis point 0.00000000 103.10739338 61.22003354  
Rotation angle (degrees) 141.04360255  
Shift along axis -234.50487804  
  
Average map value = 0.5294 for 10778 atoms, 7659 outside contour  

> select add #13

10778 atoms, 11624 bonds, 336 residues, 1 model selected  

> select subtract #13

Nothing selected  

> open /Users/francescappadoo/Downloads/rnacomposer-2024-07-03-153612/264.pdb

Chain information for 264.pdb #17  
---  
Chain | Description  
A | No description available  
  

> hide #13 models

> tile

3 models tiled  

> ui mousemode right "rotate selected models"

> select add #17

8451 atoms, 9112 bonds, 264 residues, 1 model selected  

> view matrix models
> #17,-0.5088,0.69981,0.50139,477.86,-0.29255,-0.68831,0.66381,150.72,0.80965,0.19107,0.55494,63.121

> view matrix models
> #17,-0.57726,-0.76614,0.28248,412.04,0.81336,-0.50892,0.28186,176.22,-0.072184,0.39246,0.91693,58.309

> select #13:63-68

189 atoms, 203 bonds, 6 residues, 1 model selected  

> color #9-10,17 magenta

> select #13:63-68

189 atoms, 203 bonds, 6 residues, 1 model selected  

> select add #17

8640 atoms, 9315 bonds, 270 residues, 2 models selected  

> select #13:63-68

189 atoms, 203 bonds, 6 residues, 1 model selected  

> color #17 silver

> select #13:63-68

189 atoms, 203 bonds, 6 residues, 1 model selected  

> color #9-10,17 red

> select add #17

8640 atoms, 9315 bonds, 270 residues, 2 models selected  

> select #13:63-68

189 atoms, 203 bonds, 6 residues, 1 model selected  

> select #17:63-68

189 atoms, 203 bonds, 6 residues, 1 model selected  

> color sel bynucleotide

> select add #17

8451 atoms, 9112 bonds, 264 residues, 1 model selected  

> color sel bynucleotide

> color #17 #0433ffff

> close #17

> open /Users/francescappadoo/Downloads/rnacomposer-2024-07-03-153612/264.pdb

Chain information for 264.pdb #17  
---  
Chain | Description  
A | No description available  
  

> tile

3 models tiled  

> select add #17

8451 atoms, 9112 bonds, 264 residues, 1 model selected  

> view matrix models
> #17,0.78543,0.6179,0.036096,506.3,-0.55959,0.73381,-0.3852,245.48,-0.2645,0.28235,0.92213,60.301

> select up

40785 atoms, 43984 bonds, 1272 residues, 28 models selected  

> select #17:63-68

189 atoms, 203 bonds, 6 residues, 1 model selected  

> preset "initial styles" cartoon

Using preset: Initial Styles / Cartoon  
Preset implemented in Python; no expansion to individual ChimeraX commands
available.  

> color sel magenta

> color sel yellow

> color sel red

> color sel forest green

> fitmap #17 inMap #10 search 200

Found 114 unique fits from 200 random placements having fraction of points
inside contour >= 0.100 (199 of 200).  
  
Average map values and times found:  
0.7284 (1), 0.724 (4), 0.701 (8), 0.6886 (4), 0.6841 (7), 0.6763 (4), 0.6755
(4), 0.6728 (4), 0.6716 (2), 0.6624 (4), 0.6531 (2), 0.6498 (4), 0.6476 (2),
0.6442 (1), 0.641 (1), 0.64 (1), 0.636 (3), 0.6332 (1), 0.6295 (1), 0.6258
(1), 0.6141 (2), 0.6101 (1), 0.6081 (1), 0.6038 (1), 0.5948 (3), 0.5939 (1),
0.5921 (1), 0.5921 (2), 0.591 (1), 0.5906 (1), 0.5865 (1), 0.586 (1), 0.5852
(1), 0.5845 (2), 0.5816 (2), 0.5803 (3), 0.5802 (2), 0.5792 (3), 0.5783 (7),
0.5764 (3), 0.576 (3), 0.5723 (1), 0.5717 (1), 0.5706 (1), 0.5702 (1), 0.5672
(2), 0.5629 (4), 0.5623 (3), 0.5591 (1), 0.5591 (1), 0.5591 (1), 0.5568 (3),
0.5549 (3), 0.5522 (1), 0.5477 (1), 0.5444 (2), 0.538 (1), 0.5372 (1), 0.5371
(2), 0.537 (1), 0.5314 (1), 0.5259 (2), 0.5257 (1), 0.524 (2), 0.5205 (1),
0.5171 (1), 0.513 (1), 0.5103 (1), 0.5074 (1), 0.5014 (1), 0.4976 (3), 0.4973
(2), 0.4951 (1), 0.4945 (2), 0.4945 (1), 0.4932 (1), 0.492 (1), 0.4918 (1),
0.4913 (1), 0.4823 (1), 0.4795 (1), 0.4743 (1), 0.4741 (1), 0.4656 (1), 0.4649
(2), 0.4627 (2), 0.4547 (1), 0.452 (1), 0.4518 (2), 0.4498 (1), 0.4486 (1),
0.4422 (1), 0.4406 (1), 0.4392 (2), 0.4388 (1), 0.4376 (2), 0.431 (1), 0.4249
(1), 0.4231 (1), 0.4151 (1), 0.4079 (1), 0.407 (1), 0.404 (1), 0.4013 (2),
0.3963 (1), 0.3749 (1), 0.373 (2), 0.3671 (1), 0.3459 (1), 0.2486 (1), 0.2467
(1), 0.2416 (1), 0.2386 (1), 0.1902 (1)  
  
Best fit found:  
Fit molecule 264.pdb (#17) to map cryosparc_P12_J2768_004_volume_map.mrc (#10)
using 8451 atoms  
average map value = 0.7284, steps = 112  
shifted from previous position = 28.3  
rotated from previous position = 38.7 degrees  
atoms outside contour = 5160, contour level = 0.41421  
Position of 264.pdb (#17) relative to cryosparc_P12_J2768_004_volume_map.mrc
(#10) coordinates:  
Matrix rotation and translation  
-0.84932311 -0.40353876 0.34030386 142.09082368  
0.52577829 -0.58931899 0.61340058 155.97167995  
-0.04698337 0.69989969 0.71269416 209.51610798  
Axis 0.08560059 0.38326421 0.91966357  
Axis point 53.25141698 51.93956621 0.00000000  
Rotation angle (degrees) 149.65215846  
Shift along axis 264.62575304  
  
Found 114 fits.  
Opened 264.pdb map 15 as #18, grid size 37,44,42, pixel 5, shown at level
0.035, step 1, values float32  

> fitmap #17 inMap #10 resolution 15 metric correlation

Fit map 264.pdb map 15 in map cryosparc_P12_J2768_004_volume_map.mrc using
1990 points  
correlation = 0.5526, correlation about mean = 0.2873, overlap = 225.9  
steps = 100, shift = 31.2, angle = 0.987 degrees  
  
Position of 264.pdb map 15 (#18) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.85251231 -0.39744622 0.33949853 142.92729830  
0.52150085 -0.60262118 0.60405672 155.30094800  
-0.03549105 0.69201459 0.72101052 208.89061499  
Axis 0.08827546 0.37634356 0.92226513  
Axis point 53.35770357 52.33876330 0.00000000  
Rotation angle (degrees) 150.11894061  
Shift along axis 263.71601503  
  
Average map value = 0.7271 for 8451 atoms, 5141 outside contour  

> fitmap #17 inMap #10 resolution 15 metric correlation

Fit map 264.pdb map 15 in map cryosparc_P12_J2768_004_volume_map.mrc using
1990 points  
correlation = 0.5404, correlation about mean = 0.225, overlap = 219.9  
steps = 64, shift = 2.18, angle = 1.1 degrees  
  
Position of 264.pdb map 15 (#18) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.83768620 0.37564100 -0.39645386 235.80854243  
-0.54357430 0.64387922 -0.53846679 217.33063804  
0.05299819 0.66656833 0.74355756 208.13130369  
Axis 0.76227238 -0.28431112 -0.58147055  
Axis point 0.00000000 -123.49526667 483.66858573  
Rotation angle (degrees) 52.22505251  
Shift along axis -3.06140370  
  
Average map value = 0.696 for 8451 atoms, 5027 outside contour  

> select down

189 atoms, 203 bonds, 6 residues, 1 model selected  

> fitmap #17 inMap #10 resolution 15 metric correlation

Fit map 264.pdb map 15 in map cryosparc_P12_J2768_004_volume_map.mrc using
1990 points  
correlation = 0.5258, correlation about mean = 0.2171, overlap = 209.1  
steps = 116, shift = 3.16, angle = 15.7 degrees  
  
Position of 264.pdb map 15 (#18) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.97075184 0.11906928 -0.20847875 226.01313250  
0.23869264 -0.57203758 0.78472850 164.83800437  
-0.02582063 -0.81153897 -0.58372750 160.06098267  
Axis -0.99077438 -0.11337259 0.07424806  
Axis point 0.00000000 114.72132918 53.09723398  
Rotation angle (degrees) 126.33508833  
Shift along axis -230.73191740  
  
Average map value = 0.6569 for 8451 atoms, 5269 outside contour  

> fitmap #17 inMap #10 resolution 15 metric correlation

Fit map 264.pdb map 15 in map cryosparc_P12_J2768_004_volume_map.mrc using
1990 points  
correlation = 0.5258, correlation about mean = 0.2171, overlap = 209.1  
steps = 88, shift = 8.75, angle = 0.019 degrees  
  
Position of 264.pdb map 15 (#18) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.97076922 0.11931043 -0.20825983 225.97965134  
0.23865421 -0.57209111 0.78470117 164.83943252  
-0.02552057 -0.81146582 -0.58384238 160.07111617  
Axis -0.99078033 -0.11343078 0.07407964  
Axis point 0.00000000 114.70461245 53.08930251  
Rotation angle (degrees) 126.34045905  
Shift along axis -230.73604789  
  
Average map value = 0.6568 for 8451 atoms, 5268 outside contour  

> fitmap #17 inMap #10 resolution 15 metric correlation

Fit map 264.pdb map 15 in map cryosparc_P12_J2768_004_volume_map.mrc using
1990 points  
correlation = 0.5262, correlation about mean = 0.2273, overlap = 213.9  
steps = 52, shift = 0.201, angle = 0.875 degrees  
  
Position of 264.pdb map 15 (#18) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.87256220 -0.24856775 0.42053455 152.68097691  
0.45110523 -0.07965866 0.88890864 188.03765767  
-0.18745480 0.96533341 0.18163734 236.87775876  
Axis 0.08217080 0.65370133 0.75227823  
Axis point 66.19141531 11.90574424 0.00000000  
Rotation angle (degrees) 152.28744578  
Shift along axis 313.66436529  
  
Average map value = 0.6834 for 8451 atoms, 5203 outside contour  

> fitmap #17 inMap #10 resolution 15 metric correlation

Fit map 264.pdb map 15 in map cryosparc_P12_J2768_004_volume_map.mrc using
1990 points  
correlation = 0.4989, correlation about mean = 0.2259, overlap = 194.7  
steps = 44, shift = 1.36, angle = 1.39 degrees  
  
Position of 264.pdb map 15 (#18) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.49507334 0.15402458 0.85508995 191.69814788  
-0.86296959 -0.02714987 0.50452587 170.36113632  
0.10092497 -0.98769394 0.11947734 157.79273626  
Axis -0.76251240 0.38537228 -0.51967590  
Axis point 0.00000000 172.62860772 -110.35452018  
Rotation angle (degrees) 101.90558652  
Shift along axis -162.52083728  
  
Average map value = 0.6339 for 8451 atoms, 5516 outside contour  

> fitmap #17 inMap #10 resolution 15 metric correlation

Fit map 264.pdb map 15 in map cryosparc_P12_J2768_004_volume_map.mrc using
1990 points  
correlation = 0.5026, correlation about mean = 0.2113, overlap = 190.1  
steps = 96, shift = 3.73, angle = 7.44 degrees  
  
Position of 264.pdb map 15 (#18) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.70105126 -0.41923497 0.57686150 181.62769254  
-0.69093398 -0.19915827 0.69494331 160.84137599  
-0.17645780 -0.88576408 -0.42928386 147.24123359  
Axis -0.89205243 0.42512632 -0.15332994  
Axis point 0.00000000 167.61014411 -13.32262965  
Rotation angle (degrees) 117.62582547  
Shift along axis -116.22001202  
  
Average map value = 0.6017 for 8451 atoms, 5604 outside contour  

> fitmap #17 inMap #10 resolution 15 metric correlation

Fit map 264.pdb map 15 in map cryosparc_P12_J2768_004_volume_map.mrc using
1990 points  
correlation = 0.5027, correlation about mean = 0.2111, overlap = 190.2  
steps = 28, shift = 0.0706, angle = 0.0886 degrees  
  
Position of 264.pdb map 15 (#18) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.70200826 -0.41841342 0.57629387 181.74632507  
-0.69020002 -0.20028101 0.69534987 160.76067513  
-0.17552301 -0.88589938 -0.42938788 147.24054421  
Axis -0.89242934 0.42431226 -0.15339159  
Axis point 0.00000000 167.45000360 -13.28116545  
Rotation angle (degrees) 117.63454818  
Shift along axis -116.56848918  
  
Average map value = 0.6022 for 8451 atoms, 5607 outside contour  

> fitmap #17 inMap #10 resolution 15 metric correlation

Fit map 264.pdb map 15 in map cryosparc_P12_J2768_004_volume_map.mrc using
1990 points  
correlation = 0.5026, correlation about mean = 0.2113, overlap = 190.1  
steps = 48, shift = 0.0784, angle = 0.181 degrees  
  
Position of 264.pdb map 15 (#18) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.69982433 -0.41976610 0.57796397 181.55473675  
-0.69212033 -0.19834580 0.69399451 160.86371657  
-0.17667865 -0.88569484 -0.42933588 147.24343649  
Axis -0.89160079 0.42593182 -0.15372089  
Axis point 0.00000000 167.71428007 -13.38425378  
Rotation angle (degrees) 117.64090965  
Shift along axis -115.99176416  
  
Average map value = 0.6015 for 8451 atoms, 5605 outside contour  

> fitmap #17 inMap #10 resolution 15 metric correlation

Fit map 264.pdb map 15 in map cryosparc_P12_J2768_004_volume_map.mrc using
1990 points  
correlation = 0.5027, correlation about mean = 0.2111, overlap = 190.2  
steps = 28, shift = 0.0801, angle = 0.147 degrees  
  
Position of 264.pdb map 15 (#18) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.70158083 -0.41859379 0.57668327 181.72544653  
-0.69060808 -0.19995671 0.69503797 160.77013614  
-0.17562689 -0.88588743 -0.42937007 147.23595546  
Axis -0.89226906 0.42460136 -0.15352397  
Axis point 0.00000000 167.48981487 -13.31007516  
Rotation angle (degrees) 117.63730716  
Shift along axis -116.48902169  
  
Average map value = 0.6021 for 8451 atoms, 5607 outside contour  

> fitmap #17 inMap #10 resolution 15 metric correlation

Fit map 264.pdb map 15 in map cryosparc_P12_J2768_004_volume_map.mrc using
1990 points  
correlation = 0.5026, correlation about mean = 0.2113, overlap = 190.1  
steps = 44, shift = 0.0726, angle = 0.147 degrees  
  
Position of 264.pdb map 15 (#18) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.69985311 -0.41972860 0.57795634 181.56480463  
-0.69207672 -0.19825543 0.69406382 160.86839465  
-0.17673546 -0.88573284 -0.42923409 147.23261675  
Axis -0.89160314 0.42593177 -0.15370740  
Axis point 0.00000000 167.72163329 -13.40110429  
Rotation angle (degrees) 117.63376475  
Shift along axis -115.99553342  
  
Average map value = 0.6015 for 8451 atoms, 5607 outside contour  

> fitmap #17 inMap #10 resolution 15 metric correlation

Fit map 264.pdb map 15 in map cryosparc_P12_J2768_004_volume_map.mrc using
1990 points  
correlation = 0.5026, correlation about mean = 0.2113, overlap = 190.1  
steps = 40, shift = 0.0128, angle = 0.0551 degrees  
  
Position of 264.pdb map 15 (#18) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.70051192 -0.41937374 0.57741556 181.61117241  
-0.69149313 -0.19887324 0.69446862 160.83999571  
-0.17640941 -0.88576243 -0.42930715 147.23876688  
Axis -0.89185675 0.42544657 -0.15357977  
Axis point 0.00000000 167.64217580 -13.35714762  
Rotation angle (degrees) 117.63480173  
Shift along axis -116.15522099  
  
Average map value = 0.6017 for 8451 atoms, 5606 outside contour  

> fitmap #17 inMap #10 resolution 15 metric correlation

Fit map 264.pdb map 15 in map cryosparc_P12_J2768_004_volume_map.mrc using
1990 points  
correlation = 0.5026, correlation about mean = 0.2113, overlap = 190.1  
steps = 40, shift = 0.00799, angle = 0.0261 degrees  
  
Position of 264.pdb map 15 (#18) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.70083448 -0.41921688 0.57713798 181.63438395  
-0.69118836 -0.19910301 0.69470615 160.82793868  
-0.17632264 -0.88578506 -0.42929610 147.23782102  
Axis -0.89197622 0.42522790 -0.15349158  
Axis point 0.00000000 167.61017213 -13.34103767  
Rotation angle (degrees) 117.63144408  
Shift along axis -116.22478960  
  
Average map value = 0.6017 for 8451 atoms, 5607 outside contour  

> fitmap #17 inMap #10 resolution 15 metric correlation

Fit map 264.pdb map 15 in map cryosparc_P12_J2768_004_volume_map.mrc using
1990 points  
correlation = 0.5026, correlation about mean = 0.2114, overlap = 190.1  
steps = 44, shift = 0.038, angle = 0.0506 degrees  
  
Position of 264.pdb map 15 (#18) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.70022485 -0.41974352 0.57749506 181.55769624  
-0.69172025 -0.19872545 0.69428473 160.84760481  
-0.17665856 -0.88562043 -0.42949760 147.24743371  
Axis -0.89175973 0.42567354 -0.15351421  
Axis point 0.00000000 167.66802357 -13.33116420  
Rotation angle (degrees) 117.64546462  
Shift along axis -116.04184591  
  
Average map value = 0.6015 for 8451 atoms, 5605 outside contour  

> fitmap #17 inMap #10 resolution 15 metric correlation

Fit map 264.pdb map 15 in map cryosparc_P12_J2768_004_volume_map.mrc using
1990 points  
correlation = 0.5027, correlation about mean = 0.2112, overlap = 190.1  
steps = 44, shift = 0.0766, angle = 0.0339 degrees  
  
Position of 264.pdb map 15 (#18) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.70038816 -0.41924867 0.57765647 181.64800520  
-0.69169130 -0.19897091 0.69424326 160.80761874  
-0.17612374 -0.88579970 -0.42934755 147.22833413  
Axis -0.89181961 0.42545424 -0.15377409  
Axis point 0.00000000 167.61723987 -13.37584184  
Rotation angle (degrees) 117.64326913  
Shift along axis -116.22087451  
  
Average map value = 0.6019 for 8451 atoms, 5605 outside contour  

> fitmap #17 inMap #10 resolution 15 metric correlation

Fit map 264.pdb map 15 in map cryosparc_P12_J2768_004_volume_map.mrc using
1990 points  
correlation = 0.5026, correlation about mean = 0.2113, overlap = 190.1  
steps = 60, shift = 0.0625, angle = 0.0356 degrees  
  
Position of 264.pdb map 15 (#18) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.70004733 -0.41965689 0.57777318 181.57120652  
-0.69191683 -0.19853725 0.69414267 160.85462088  
-0.17659226 -0.88570369 -0.42935315 147.24306791  
Axis -0.89168565 0.42577358 -0.15366702  
Axis point 0.00000000 167.68896117 -13.37085754  
Rotation angle (degrees) 117.64044819  
Shift along axis -116.04319556  
  
Average map value = 0.6015 for 8451 atoms, 5605 outside contour  

> fitmap #17 inMap #10 resolution 15 metric correlation

Fit map 264.pdb map 15 in map cryosparc_P12_J2768_004_volume_map.mrc using
1990 points  
correlation = 0.4908, correlation about mean = 0.2138, overlap = 184.3  
steps = 120, shift = 1.63, angle = 3.1 degrees  
  
Position of 264.pdb map 15 (#18) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.18393919 0.65288024 -0.73478829 229.56797066  
0.98146285 0.16292618 -0.10092458 229.11296705  
0.05382458 -0.73973139 -0.67074617 143.36810207  
Axis -0.59883582 -0.73926831 0.30802276  
Axis point -21.84317279 0.00000000 133.53706673  
Rotation angle (degrees) 147.76629877  
Shift along axis -262.68884227  
  
Average map value = 0.5909 for 8451 atoms, 5684 outside contour  

> fitmap #17 inMap #10 resolution 15 metric correlation

Fit map 264.pdb map 15 in map cryosparc_P12_J2768_004_volume_map.mrc using
1990 points  
correlation = 0.4687, correlation about mean = 0.2283, overlap = 161.9  
steps = 208, shift = 12.5, angle = 20.5 degrees  
  
Position of 264.pdb map 15 (#18) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.16849971 0.55486148 -0.81470037 228.78472834  
0.50448692 -0.66151840 -0.55487513 166.34375882  
-0.84681809 -0.50450194 -0.16845467 129.20809173  
Axis 0.64461382 0.41100286 -0.64463143  
Axis point 180.69036200 122.18916356 0.00000000  
Rotation angle (degrees) 177.76074764  
Shift along axis 132.55396031  
  
Average map value = 0.5226 for 8451 atoms, 5898 outside contour  

> fitmap #17 inMap #10 resolution 15 metric correlation

Fit map 264.pdb map 15 in map cryosparc_P12_J2768_004_volume_map.mrc using
1990 points  
correlation = 0.3625, correlation about mean = 0.1073, overlap = 111.7  
steps = 292, shift = 7.26, angle = 20.5 degrees  
  
Position of 264.pdb map 15 (#18) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.63836671 -0.57015423 -0.51711905 177.70033383  
0.51518094 -0.18267777 0.83738724 204.27325201  
-0.57190604 -0.80097000 0.17711718 169.05604147  
Axis -0.83334415 0.02786720 0.55205159  
Axis point 0.00000000 202.84682776 40.91520516  
Rotation angle (degrees) 100.57934210  
Shift along axis -49.06535447  
  
Average map value = 0.3627 for 8451 atoms, 6784 outside contour  

> select down

189 atoms, 203 bonds, 6 residues, 1 model selected  

> select down

189 atoms, 203 bonds, 6 residues, 1 model selected  

> fitmap #17 inMap #10 resolution 15 metric correlation

Fit map 264.pdb map 15 in map cryosparc_P12_J2768_004_volume_map.mrc using
1990 points  
correlation = 0.5526, correlation about mean = 0.2875, overlap = 225.8  
steps = 48, shift = 0.705, angle = 0.937 degrees  
  
Position of 264.pdb map 15 (#18) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.85212065 -0.39819736 0.33960166 142.84172719  
0.52209271 -0.60192919 0.60423538 155.35496006  
-0.03618877 0.69218500 0.72081221 208.87537921  
Axis 0.08813103 0.37656556 0.92218832  
Axis point 53.31650973 52.36564383 0.00000000  
Rotation angle (degrees) 150.06806902  
Shift along axis 263.71255202  
  
Average map value = 0.7273 for 8451 atoms, 5145 outside contour  

> fitmap #17 inMap #10 resolution 15 metric correlation

Fit map 264.pdb map 15 in map cryosparc_P12_J2768_004_volume_map.mrc using
1990 points  
correlation = 0.5526, correlation about mean = 0.2873, overlap = 225.9  
steps = 44, shift = 0.0729, angle = 0.0726 degrees  
  
Position of 264.pdb map 15 (#18) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.85259099 -0.39734266 0.33942221 142.94340094  
0.52138049 -0.60281979 0.60396244 155.29555715  
-0.03536961 0.69190106 0.72112542 208.88767250  
Axis 0.08828118 0.37625181 0.92230201  
Axis point 53.36541299 52.34463431 0.00000000  
Rotation angle (degrees) 150.12827884  
Shift along axis 263.70696862  
  
Average map value = 0.7271 for 8451 atoms, 5140 outside contour  

> fitmap #17 inMap #10 resolution 15 metric correlation

Fit map 264.pdb map 15 in map cryosparc_P12_J2768_004_volume_map.mrc using
1990 points  
correlation = 0.5258, correlation about mean = 0.2171, overlap = 209.1  
steps = 116, shift = 3.16, angle = 15.7 degrees  
  
Position of 264.pdb map 15 (#18) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.97075678 0.11905909 -0.20846154 226.01371536  
0.23867270 -0.57204040 0.78473248 164.83682002  
-0.02581891 -0.81153843 -0.58372824 160.06109820  
Axis -0.99077595 -0.11336292 0.07424196  
Axis point 0.00000000 114.72147677 53.09636204  
Rotation angle (degrees) 126.33504074  
Shift along axis -230.73208564  
  
Average map value = 0.657 for 8451 atoms, 5269 outside contour  

> fitmap #17 inMap #10 resolution 15 metric correlation

Fit map 264.pdb map 15 in map cryosparc_P12_J2768_004_volume_map.mrc using
1990 points  
correlation = 0.5259, correlation about mean = 0.2171, overlap = 209.1  
steps = 40, shift = 0.00357, angle = 0.00832 degrees  
  
Position of 264.pdb map 15 (#18) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.97078565 0.11893378 -0.20839863 226.01092961  
0.23854786 -0.57207575 0.78474467 164.83153053  
-0.02588717 -0.81153189 -0.58373432 160.06174292  
Axis -0.99078513 -0.11328215 0.07424268  
Axis point 0.00000000 114.72739316 53.09341976  
Rotation angle (degrees) 126.33548708  
Shift along axis -230.71732715  
  
Average map value = 0.657 for 8451 atoms, 5268 outside contour  

> fitmap #17 inMap #10 resolution 15 metric correlation

Fit map 264.pdb map 15 in map cryosparc_P12_J2768_004_volume_map.mrc using
1990 points  
correlation = 0.5259, correlation about mean = 0.2171, overlap = 209.1  
steps = 40, shift = 0.00701, angle = 0.00569 degrees  
  
Position of 264.pdb map 15 (#18) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.97076535 0.11901969 -0.20844412 226.00825475  
0.23863482 -0.57206850 0.78472351 164.83592990  
-0.02584679 -0.81152440 -0.58374651 160.06225155  
Axis -0.99077877 -0.11333676 0.07424419  
Axis point 0.00000000 114.72316081 53.09650349  
Rotation angle (degrees) 126.33638502  
Shift along axis -230.72246031  
  
Average map value = 0.6569 for 8451 atoms, 5267 outside contour  

> fitmap #17 inMap #10 resolution 15 metric correlation

Fit map 264.pdb map 15 in map cryosparc_P12_J2768_004_volume_map.mrc using
1990 points  
correlation = 0.5259, correlation about mean = 0.217, overlap = 209.1  
steps = 48, shift = 0.0294, angle = 0.0407 degrees  
  
Position of 264.pdb map 15 (#18) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.97089964 0.11837852 -0.20818362 226.00760133  
0.23804671 -0.57221563 0.78479486 164.81114052  
-0.02622308 -0.81151446 -0.58374356 160.06091313  
Axis -0.99082136 -0.11294201 0.07427746  
Axis point 0.00000000 114.75449368 53.08226296  
Rotation angle (degrees) 126.33673679  
Shift along axis -230.65834254  
  
Average map value = 0.6571 for 8451 atoms, 5269 outside contour  

> fitmap #17 inMap #10 resolution 15 metric correlation

Fit map 264.pdb map 15 in map cryosparc_P12_J2768_004_volume_map.mrc using
1990 points  
correlation = 0.5258, correlation about mean = 0.2171, overlap = 209.1  
steps = 44, shift = 0.0784, angle = 0.0612 degrees  
  
Position of 264.pdb map 15 (#18) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.97076110 0.11943377 -0.20822697 225.97440891  
0.23869971 -0.57208035 0.78469514 164.84186792  
-0.02540348 -0.81145522 -0.58386215 160.07366410  
Axis -0.99077781 -0.11348396 0.07403190  
Axis point 0.00000000 114.69759073 53.08815784  
Rotation angle (degrees) 126.34106991  
Shift along axis -230.74677954  
  
Average map value = 0.6568 for 8451 atoms, 5266 outside contour  

> fitmap #17 inMap #10 resolution 15 metric correlation

Fit map 264.pdb map 15 in map cryosparc_P12_J2768_004_volume_map.mrc using
1990 points  
correlation = 0.5259, correlation about mean = 0.2171, overlap = 209.1  
steps = 44, shift = 0.0575, angle = 0.0406 degrees  
  
Position of 264.pdb map 15 (#18) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.97081418 0.11874205 -0.20837506 226.00400359  
0.23841586 -0.57212155 0.78475139 164.82710562  
-0.02603289 -0.81152768 -0.58373370 160.06084212  
Axis -0.99079422 -0.11317793 0.07428032  
Axis point 0.00000000 114.73803355 53.09187428  
Rotation angle (degrees) 126.33607950  
Shift along axis -230.68888183  
  
Average map value = 0.657 for 8451 atoms, 5268 outside contour  

> fitmap #17 inMap #10 resolution 15 metric correlation

Fit map 264.pdb map 15 in map cryosparc_P12_J2768_004_volume_map.mrc using
1990 points  
correlation = 0.5259, correlation about mean = 0.2171, overlap = 209.1  
steps = 40, shift = 0.00807, angle = 0.0165 degrees  
  
Position of 264.pdb map 15 (#18) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.97076642 0.11901597 -0.20844126 226.00848865  
0.23863031 -0.57206942 0.78472421 164.83565525  
-0.02584818 -0.81152430 -0.58374660 160.06227230  
Axis -0.99077911 -0.11333411 0.07424370  
Axis point 0.00000000 114.72327792 53.09638609  
Rotation angle (degrees) 126.33638273  
Shift along axis -230.72237845  
  
Average map value = 0.6569 for 8451 atoms, 5268 outside contour  

> fitmap #17 inMap #10 resolution 15 metric correlation

Fit map 264.pdb map 15 in map cryosparc_P12_J2768_004_volume_map.mrc using
1990 points  
correlation = 0.5258, correlation about mean = 0.2171, overlap = 209.1  
steps = 48, shift = 0.0715, angle = 0.0691 degrees  
  
Position of 264.pdb map 15 (#18) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.97057208 0.12018282 -0.20867665 225.98820968  
0.23950359 -0.57192862 0.78456078 164.86919803  
-0.02505743 -0.81145158 -0.58388216 160.07620071  
Axis -0.99071808 -0.11398087 0.07406788  
Axis point 0.00000000 114.65800493 53.11857939  
Rotation angle (degrees) 126.34310803  
Shift along axis -230.82603524  
  
Average map value = 0.6567 for 8451 atoms, 5262 outside contour  

> color zone #10 near sel & #17 distance 17.8

[Repeated 1 time(s)]

> undo

[Repeated 1 time(s)]

> color zone #10 near sel & #17 distance 17.8

> undo

> color zone #10 near sel & #17 distance 17.8

> undo

> hide #17 models

> show #13 models

> select up

8451 atoms, 9112 bonds, 264 residues, 1 model selected  

> select up

40785 atoms, 43984 bonds, 1272 residues, 30 models selected  

> hide #13 models

> show #13 models

> select subtract #13

30007 atoms, 32360 bonds, 936 residues, 29 models selected  

> select add #13

40785 atoms, 43984 bonds, 1272 residues, 30 models selected  

> select subtract #10

40785 atoms, 43984 bonds, 1272 residues, 28 models selected  

> select subtract #13

30007 atoms, 32360 bonds, 936 residues, 27 models selected  

> select #13:63-68

189 atoms, 203 bonds, 6 residues, 1 model selected  

> color sel magenta

> color sel red

> color sel orange

> color sel hot pink

> color zone #10 near sel & #13 distance 17.8

[Repeated 2 time(s)]

> undo

[Repeated 2 time(s)]

> select add #13

10778 atoms, 11624 bonds, 336 residues, 1 model selected  

> select subtract #13

Nothing selected  

> select #13:63-68

189 atoms, 203 bonds, 6 residues, 1 model selected  

> color sel lime

> color zone #10 near sel & #13 distance 17.8

> undo

> fitmap #17 inMap #10 resolution 15 metric correlation

Fit map 264.pdb map 15 in map cryosparc_P12_J2768_004_volume_map.mrc using
1990 points  
correlation = 0.4926, correlation about mean = 0.2211, overlap = 185.8  
steps = 224, shift = 11.2, angle = 37.9 degrees  
  
Position of 264.pdb map 15 (#18) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.83127446 -0.24575983 0.49858286 152.46856328  
0.40650300 0.34299872 0.84682179 221.25480560  
-0.37912807 0.90661673 -0.18522397 237.12641867  
Axis 0.05459875 0.80143761 0.59558101  
Axis point 76.59246794 0.00000000 11.31247479  
Rotation angle (degrees) 146.79848712  
Shift along axis 326.87450625  
  
Average map value = 0.6062 for 8451 atoms, 5639 outside contour  

> fitmap #17 inMap #10 resolution 15 metric correlation

Fit map 264.pdb map 15 in map cryosparc_P12_J2768_004_volume_map.mrc using
1990 points  
correlation = 0.4926, correlation about mean = 0.2213, overlap = 185.8  
steps = 40, shift = 0.0261, angle = 0.141 degrees  
  
Position of 264.pdb map 15 (#18) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.82994486 -0.24712786 0.50011933 152.42747177  
0.40755973 0.34353481 0.84609624 221.33172300  
-0.38090236 0.90604170 -0.18439559 237.05227190  
Axis 0.05453175 0.80145605 0.59556233  
Axis point 76.60072454 0.00000000 11.14318975  
Rotation angle (degrees) 146.65780561  
Shift along axis 326.87918837  
  
Average map value = 0.6062 for 8451 atoms, 5646 outside contour  

> fitmap #17 inMap #10 resolution 15 metric correlation

Fit map 264.pdb map 15 in map cryosparc_P12_J2768_004_volume_map.mrc using
1990 points  
correlation = 0.4926, correlation about mean = 0.2213, overlap = 185.8  
steps = 28, shift = 0.0242, angle = 0.0546 degrees  
  
Position of 264.pdb map 15 (#18) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.82964743 -0.24672036 0.50081353 152.46432348  
0.40842107 0.34337018 0.84574765 221.34543772  
-0.38062762 0.90621515 -0.18411040 237.07068098  
Axis 0.05497488 0.80137467 0.59563109  
Axis point 76.55223882 0.00000000 11.13061797  
Rotation angle (degrees) 146.63602585  
Shift along axis 326.96900339  
  
Average map value = 0.6062 for 8451 atoms, 5647 outside contour  

> fitmap #17 inMap #10 resolution 15 metric correlation

Fit map 264.pdb map 15 in map cryosparc_P12_J2768_004_volume_map.mrc using
1990 points  
correlation = 0.5262, correlation about mean = 0.2273, overlap = 213.9  
steps = 124, shift = 15.2, angle = 35.8 degrees  
  
Position of 264.pdb map 15 (#18) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.87256919 -0.24873167 0.42042309 152.68200991  
0.45101475 -0.07961556 0.88895839 188.03441870  
-0.18763987 0.96529468 0.18165175 236.87642667  
Axis 0.08206719 0.65371292 0.75227947  
Axis point 66.20802995 11.91116012 0.00000000  
Rotation angle (degrees) 152.28433559  
Shift along axis 313.64798447  
  
Average map value = 0.6834 for 8451 atoms, 5206 outside contour  

> fitmap #17 inMap #10 resolution 15 metric correlation

Fit map 264.pdb map 15 in map cryosparc_P12_J2768_004_volume_map.mrc using
1990 points  
correlation = 0.5262, correlation about mean = 0.2273, overlap = 213.9  
steps = 40, shift = 0.00577, angle = 0.00231 degrees  
  
Position of 264.pdb map 15 (#18) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.87257981 -0.24873283 0.42040036 152.67716582  
0.45099895 -0.07965223 0.88896312 188.03426866  
-0.18762848 0.96529135 0.18168119 236.87365958  
Axis 0.08206153 0.65370012 0.75229121  
Axis point 66.20573157 11.91426461 0.00000000  
Rotation angle (degrees) 152.28543502  
Shift along axis 313.64491631  
  
Average map value = 0.6834 for 8451 atoms, 5206 outside contour  

> fitmap #17 inMap #10 resolution 15 metric correlation

Fit map 264.pdb map 15 in map cryosparc_P12_J2768_004_volume_map.mrc using
1990 points  
correlation = 0.5262, correlation about mean = 0.2274, overlap = 213.9  
steps = 40, shift = 0.0106, angle = 0.00969 degrees  
  
Position of 264.pdb map 15 (#18) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.87255215 -0.24889469 0.42036196 152.66100672  
0.45098881 -0.07964161 0.88896922 188.03731384  
-0.18778140 0.96525051 0.18174019 236.86722024  
Axis 0.08199474 0.65369312 0.75230457  
Axis point 66.20712209 11.92677700 0.00000000  
Rotation angle (degrees) 152.27944350  
Shift along axis 313.63239007  
  
Average map value = 0.6834 for 8451 atoms, 5203 outside contour  

> fitmap #17 inMap #10 resolution 15 metric correlation

Fit map 264.pdb map 15 in map cryosparc_P12_J2768_004_volume_map.mrc using
1990 points  
correlation = 0.5262, correlation about mean = 0.2272, overlap = 213.9  
steps = 44, shift = 0.0681, angle = 0.0658 degrees  
  
Position of 264.pdb map 15 (#18) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.87264251 -0.24787056 0.42077933 152.76324972  
0.45126112 -0.07986565 0.88881091 188.01414886  
-0.18670423 0.96549550 0.18154852 236.90488386  
Axis 0.08251372 0.65366102 0.75227572  
Axis point 66.18239280 11.86527678 0.00000000  
Rotation angle (degrees) 152.31062692  
Shift along axis 313.72037563  
  
Average map value = 0.6834 for 8451 atoms, 5208 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4553, correlation about mean = 0.2033, overlap = 208.2  
steps = 140, shift = 33, angle = 3.45 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99668320 0.07833475 -0.02205220 227.55746733  
0.07476767 -0.77445274 0.62819799 154.57941129  
0.03213132 -0.62776318 -0.77774093 174.23976967  
Axis -0.99906670 -0.04310081 -0.00283747  
Axis point 0.00000000 103.09548889 61.23210838  
Rotation angle (degrees) 141.05550500  
Shift along axis -234.50198593  
  
Average map value = 0.5294 for 10778 atoms, 7660 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4553, correlation about mean = 0.2032, overlap = 208.1  
steps = 108, shift = 29.7, angle = 0.0181 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99666382 0.07857607 -0.02206961 227.52540657  
0.07495977 -0.77431023 0.62835076 154.59834916  
0.03228458 -0.62790880 -0.77761701 174.24028712  
Axis -0.99906118 -0.04322607 -0.00287593  
Axis point 0.00000000 103.09962918 61.22169675  
Rotation angle (degrees) 141.04424694  
Shift along axis -234.49558197  
  
Average map value = 0.5294 for 10778 atoms, 7661 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4553, correlation about mean = 0.2032, overlap = 208.1  
steps = 152, shift = 32.9, angle = 0.032 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99667459 0.07855148 -0.02166698 227.51452118  
0.07470044 -0.77457478 0.62805551 154.57456179  
0.03255197 -0.62758551 -0.77786682 174.28130355  
Axis -0.99906434 -0.04313989 -0.00306412  
Axis point 0.00000000 103.07757349 61.23786242  
Rotation angle (degrees) 141.06719852  
Shift along axis -234.50399426  
  
Average map value = 0.5293 for 10778 atoms, 7659 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4553, correlation about mean = 0.2033, overlap = 208.1  
steps = 160, shift = 32.1, angle = 0.0233 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99668220 0.07836083 -0.02200468 227.56483627  
0.07476018 -0.77449369 0.62814840 154.58100151  
0.03217972 -0.62770941 -0.77778233 174.23701553  
Axis -0.99906644 -0.04310505 -0.00286440  
Axis point 0.00000000 103.09079823 61.23033444  
Rotation angle (degrees) 141.05930385  
Shift along axis -234.51469756  
  
Average map value = 0.5294 for 10778 atoms, 7658 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4553, correlation about mean = 0.2033, overlap = 208.2  
steps = 136, shift = 33.3, angle = 0.0177 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99668771 0.07826122 -0.02210956 227.56369928  
0.07473981 -0.77432347 0.62836064 154.57997412  
0.03205630 -0.62793179 -0.77760789 174.22746234  
Axis -0.99906790 -0.04307545 -0.00280040  
Axis point 0.00000000 103.10822464 61.22038495  
Rotation angle (degrees) 141.04334641  
Shift along axis -234.49809657  
  
Average map value = 0.5294 for 10778 atoms, 7656 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4553, correlation about mean = 0.2032, overlap = 208.1  
steps = 48, shift = 0.0613, angle = 0.0451 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99667560 0.07856845 -0.02155893 227.51219091  
0.07464835 -0.77462734 0.62799688 154.57036059  
0.03264058 -0.62751851 -0.77791715 174.28709910  
Axis -0.99906465 -0.04312876 -0.00311939  
Axis point 0.00000000 103.07155191 61.23809877  
Rotation angle (degrees) 141.07184365  
Shift along axis -234.50948426  
  
Average map value = 0.5293 for 10778 atoms, 7660 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4553, correlation about mean = 0.2032, overlap = 208.1  
steps = 60, shift = 0.0564, angle = 0.0264 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99666199 0.07869728 -0.02171759 227.56879183  
0.07483469 -0.77435294 0.62831303 154.58294676  
0.03262943 -0.62784095 -0.77765741 174.24701383  
Axis -0.99906068 -0.04322397 -0.00307205  
Axis point 0.00000000 103.08094966 61.20861920  
Rotation angle (degrees) 141.04811715  
Shift along axis -234.57201730  
  
Average map value = 0.5293 for 10778 atoms, 7659 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4553, correlation about mean = 0.2033, overlap = 208.2  
steps = 48, shift = 0.0134, angle = 0.0477 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99667523 0.07833588 -0.02240576 227.57412616  
0.07499519 -0.77452744 0.62807877 154.58851477  
0.03184720 -0.62767088 -0.77782710 174.22633066  
Axis -0.99906450 -0.04316323 -0.00265783  
Axis point 0.00000000 103.09114363 61.25217043  
Rotation angle (degrees) 141.06320093  
Shift along axis -234.49683348  
  
Average map value = 0.5294 for 10778 atoms, 7661 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4553, correlation about mean = 0.2032, overlap = 208.1  
steps = 48, shift = 0.064, angle = 0.0648 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99667880 0.07859644 -0.02130729 227.51607877  
0.07450591 -0.77451764 0.62814909 154.56380294  
0.03286739 -0.62765040 -0.77780119 174.28579258  
Axis -0.99906549 -0.04309928 -0.00325427  
Axis point 0.00000000 103.07457986 61.21480821  
Rotation angle (degrees) 141.06141017  
Shift along axis -234.53222544  
  
Average map value = 0.5293 for 10778 atoms, 7660 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4553, correlation about mean = 0.2032, overlap = 208.1  
steps = 68, shift = 3.31, angle = 0.0194 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99667653 0.07853556 -0.02163534 227.52996776  
0.07466646 -0.77454375 0.62809782 154.57238318  
0.03257048 -0.62762580 -0.77783353 174.27175812  
Axis -0.99906487 -0.04312663 -0.00307829  
Axis point 0.00000000 103.07793789 61.22927823  
Rotation angle (degrees) 141.06417807  
Shift along axis -234.51984298  
  
Average map value = 0.5293 for 10778 atoms, 7663 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4553, correlation about mean = 0.2033, overlap = 208.2  
steps = 52, shift = 2.67, angle = 0.0398 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99668827 0.07823432 -0.02217908 227.57390017  
0.07476355 -0.77434126 0.62833590 154.57968221  
0.03198323 -0.62791321 -0.77762591 174.22069137  
Axis -0.99906807 -0.04307413 -0.00276024  
Axis point 0.00000000 103.10710356 61.22272364  
Rotation angle (degrees) 141.04495161  
Shift along axis -234.50109186  
  
Average map value = 0.5294 for 10778 atoms, 7658 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4553, correlation about mean = 0.2032, overlap = 208.1  
steps = 100, shift = 19.8, angle = 0.0467 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99667808 0.07854479 -0.02153052 227.51785920  
0.07461025 -0.77459435 0.62804209 154.56900250  
0.03265200 -0.62756219 -0.77788144 174.28144484  
Axis -0.99906533 -0.04311221 -0.00313066  
Axis point 0.00000000 103.07391390 61.23128666  
Rotation angle (degrees) 141.06859854  
Shift along axis -234.51463197  
  
Average map value = 0.5293 for 10778 atoms, 7660 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4553, correlation about mean = 0.2033, overlap = 208.1  
steps = 80, shift = 14.4, angle = 0.03 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99667779 0.07842246 -0.02198481 227.56647300  
0.07479272 -0.77443407 0.62821803 154.58576448  
0.03224059 -0.62777527 -0.77772665 174.23404524  
Axis -0.99906517 -0.04313296 -0.00288723  
Axis point 0.00000000 103.09283100 61.22301731  
Rotation angle (degrees) 141.05424959  
Shift along axis -234.52453162  
  
Average map value = 0.5294 for 10778 atoms, 7657 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4553, correlation about mean = 0.2033, overlap = 208.2  
steps = 56, shift = 4.98, angle = 0.0214 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99668795 0.07820770 -0.02228706 227.55843416  
0.07481706 -0.77446398 0.62817826 154.58061594  
0.03186783 -0.62776516 -0.77775017 174.22941440  
Axis -0.99906804 -0.04307871 -0.00269716  
Axis point 0.00000000 103.10194465 61.24211928  
Rotation angle (degrees) 141.05622184  
Shift along axis -234.47541602  
  
Average map value = 0.5294 for 10778 atoms, 7660 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4553, correlation about mean = 0.2032, overlap = 208.1  
steps = 48, shift = 0.0598, angle = 0.0424 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99667263 0.07857290 -0.02167954 227.51101750  
0.07472655 -0.77460288 0.62801775 154.57550162  
0.03255212 -0.62754815 -0.77789695 174.28521848  
Axis -0.99906381 -0.04315256 -0.00306057  
Axis point 0.00000000 103.07519090 61.24250511  
Rotation angle (degrees) 141.06994262  
Shift along axis -234.50176502  
  
Average map value = 0.5293 for 10778 atoms, 7659 outside contour  

> select add #13

10778 atoms, 11624 bonds, 336 residues, 1 model selected  

> hide #13 models

> select subtract #13

Nothing selected  

> hide #!10 models

> tile

1 model tiled  

> open
> /Users/francescappadoo/Downloads/cryosparc_P12_J2761_class_00_final_volume.mrc

Opened cryosparc_P12_J2761_class_00_final_volume.mrc as #19, grid size
128,128,128, pixel 2.96, shown at level 0.147, step 1, values float32  

> open
> /Users/francescappadoo/Downloads/cryosparc_P12_J2761_class_01_final_volume.mrc

Opened cryosparc_P12_J2761_class_01_final_volume.mrc as #20, grid size
128,128,128, pixel 2.96, shown at level 0.12, step 1, values float32  

> open
> /Users/francescappadoo/Downloads/cryosparc_P12_J2761_class_02_final_volume.mrc

Opened cryosparc_P12_J2761_class_02_final_volume.mrc as #21, grid size
128,128,128, pixel 2.96, shown at level 0.113, step 1, values float32  

> open
> /Users/francescappadoo/Downloads/cryosparc_P12_J2761_class_03_final_volume.mrc

Opened cryosparc_P12_J2761_class_03_final_volume.mrc as #22, grid size
128,128,128, pixel 2.96, shown at level 0.117, step 1, values float32  

> open
> /Users/francescappadoo/Downloads/cryosparc_P12_J2761_class_04_final_volume.mrc

Opened cryosparc_P12_J2761_class_04_final_volume.mrc as #23, grid size
128,128,128, pixel 2.96, shown at level 0.121, step 1, values float32  

> open
> /Users/francescappadoo/Downloads/cryosparc_P12_J2761_class_05_final_volume.mrc

Opened cryosparc_P12_J2761_class_05_final_volume.mrc as #24, grid size
128,128,128, pixel 2.96, shown at level 0.13, step 1, values float32  

> tile

7 models tiled  

> tile

7 models tiled  

> tile

7 models tiled  

> volume #19 level 0.2731

> volume #20 level 0.273

> volume #21 level 0.273

> volume #22 level 0.273

> volume #23 level 0.273

> volume #24 level 0.273

> tile

7 models tiled  

> surface dust #19 size 29.6

> surface dust #20 size 29.6

> surface dust #21 size 29.6

> surface dust #22 size 29.6

> surface dust #23 size 29.6

> surface dust #24 size 29.6

> volume #21 level 0.5133

> tile

7 models tiled  

> tile

7 models tiled  

> volume #20 level 0.5

> volume #19 level 0.5

> volume #22 level 0.5

> volume #23 level 0.5

> volume #24 level 0.5

> close #24

> close #23

> close #22

> close #21

> close #20

> close #19

> show #!12 models

> tile

2 models tiled  

> hide #!12 models

> show #!10 models

> tile

2 models tiled  

> tile

2 models tiled  

> tile

2 models tiled  

> ui tool show "Scale Bar"

> scalebar off

> scalebar 50

> save /Users/francescappadoo/Desktop/image21.png supersample 3

> movie record

> turn y 2 180

> wait 180

> movie encode /Users/francescappadoo/Desktop/movie7.mp4

Movie saved to /Users/francescappadoo/Desktop/movie7.mp4  
  

> tile

2 models tiled  

> show #13 models

> fitmap #13 inMap #10 search 200 resolution 15

Found 107 unique fits from 200 random placements having fraction of points
inside contour >= 0.100 (199 of 200).  
  
Correlations and times found:  
0.4819 (4), 0.4674 (1), 0.4673 (4), 0.4642 (5), 0.4632 (5), 0.4603 (4), 0.4597
(8), 0.4588 (1), 0.4577 (2), 0.4572 (4), 0.4571 (1), 0.4555 (1), 0.4552 (3),
0.4515 (2), 0.45 (2), 0.4473 (6), 0.447 (3), 0.4461 (1), 0.4416 (5), 0.4411
(2), 0.4397 (2), 0.4377 (1), 0.4371 (3), 0.4355 (3), 0.435 (8), 0.4349 (2),
0.4344 (6), 0.4342 (1), 0.4331 (1), 0.4324 (2), 0.4315 (4), 0.4315 (1), 0.4298
(1), 0.4291 (1), 0.4276 (2), 0.4274 (2), 0.4244 (2), 0.4242 (1), 0.4218 (2),
0.4213 (1), 0.4208 (1), 0.4203 (1), 0.4177 (1), 0.4155 (2), 0.4152 (1), 0.4145
(2), 0.4143 (1), 0.4133 (1), 0.4112 (2), 0.4105 (1), 0.4103 (1), 0.4102 (1),
0.4098 (1), 0.4095 (1), 0.4094 (1), 0.4089 (1), 0.4078 (1), 0.4071 (3), 0.4069
(2), 0.4066 (1), 0.4053 (1), 0.4045 (1), 0.4044 (4), 0.4043 (1), 0.4042 (1),
0.4023 (1), 0.4015 (2), 0.4012 (1), 0.4011 (2), 0.3992 (1), 0.3975 (1), 0.3965
(1), 0.3952 (3), 0.3939 (1), 0.3936 (1), 0.3915 (1), 0.39 (1), 0.3872 (1),
0.3863 (1), 0.3861 (1), 0.3858 (2), 0.3851 (1), 0.3851 (1), 0.385 (1), 0.385
(3), 0.3843 (1), 0.3824 (1), 0.3811 (1), 0.379 (1), 0.3785 (1), 0.3784 (2),
0.3755 (1), 0.3745 (2), 0.3741 (1), 0.3718 (3), 0.3702 (1), 0.3685 (1), 0.3646
(1), 0.3629 (1), 0.3579 (1), 0.3577 (1), 0.3562 (1), 0.353 (1), 0.3465 (3),
0.3379 (1), 0.326 (1), 0.317 (1)  
  
Best fit found:  
Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4819, correlation about mean = 0.2294, overlap = 224.8  
steps = 172, shift = 25.4, angle = 53.4 degrees  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.42971040 0.03186213 0.90240439 185.85081044  
0.67363429 -0.67681681 -0.29687666 174.46902513  
0.60130342 0.73546157 -0.31229866 231.80470154  
Axis 0.82435372 0.24043835 0.51247473  
Axis point 0.00000000 44.99840516 79.25627709  
Rotation angle (degrees) 141.23335060  
Shift along axis 313.94990295  
  
Found 107 fits.  

> ui tool show "Fit in Map"

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4818, correlation about mean = 0.2293, overlap = 224.8  
steps = 36, shift = 0.0488, angle = 0.025 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.43006982 0.03173510 0.90223763 185.89214590  
0.67355147 -0.67673155 -0.29725870 174.48638675  
0.60113922 0.73554552 -0.31241705 231.83723162  
Axis 0.82445840 0.24035834 0.51234385  
Axis point 0.00000000 44.99671949 79.29541528  
Rotation angle (degrees) 141.21842447  
Shift along axis 313.97997902  
  
Average map value = 0.5643 for 10778 atoms, 7426 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4818, correlation about mean = 0.2293, overlap = 224.8  
steps = 48, shift = 0.0129, angle = 0.0332 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.42956656 0.03187923 0.90247226 185.88814977  
0.67371685 -0.67677932 -0.29677477 174.48307707  
0.60131370 0.73549533 -0.31219936 231.82671379  
Axis 0.82430508 0.24048602 0.51253059  
Axis point 0.00000000 44.99760600 79.24387100  
Rotation angle (degrees) 141.23367280  
Shift along axis 314.00757042  
  
Average map value = 0.5643 for 10778 atoms, 7423 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4674, correlation about mean = 0.2145, overlap = 213.4  
steps = 44, shift = 0.0502, angle = 0.0178 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.65473302 0.22703651 0.72095700 204.62053073  
0.73940564 0.00555774 -0.67323720 223.88993598  
-0.15685628 0.97387039 -0.16423325 216.29790688  
Axis 0.85101196 0.45354026 0.26472604  
Axis point 0.00000000 -0.78429236 109.42560915  
Rotation angle (degrees) 104.59419168  
Shift along axis 332.93730661  
  
Average map value = 0.5427 for 10778 atoms, 7557 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4589, correlation about mean = 0.202, overlap = 209  
steps = 76, shift = 0.0282, angle = 0.0186 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.79888372 0.55944586 -0.22091860 248.30204670  
0.56221543 -0.56399820 0.60483035 180.42433001  
0.21377220 -0.60739302 -0.76509813 180.72906724  
Axis -0.94130758 -0.33754319 0.00215061  
Axis point 0.00000000 80.83555026 74.93232863  
Rotation angle (degrees) 139.91645116  
Shift along axis -294.24092668  
  
Average map value = 0.5233 for 10778 atoms, 7737 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4588, correlation about mean = 0.2019, overlap = 209  
steps = 100, shift = 0.0452, angle = 0.0273 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.79891893 0.55939899 -0.22090997 248.25754430  
0.56227525 -0.56431388 0.60448019 180.42394958  
0.21348310 -0.60714293 -0.76537730 180.74406701  
Axis -0.94132777 -0.33748635 0.00223461  
Axis point 0.00000000 80.83497749 74.95454577  
Rotation angle (degrees) 139.94135686  
Shift along axis -294.17844832  
  
Average map value = 0.5232 for 10778 atoms, 7737 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4589, correlation about mean = 0.202, overlap = 209  
steps = 40, shift = 0.0373, angle = 0.113 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.79775547 0.56082463 -0.22149907 248.31231560  
0.56363080 -0.56303304 0.60441213 180.52732821  
0.21425797 -0.60701684 -0.76526078 180.78155596  
Axis -0.94097361 -0.33847291 0.00217968  
Axis point 0.00000000 80.75727764 75.00429927  
Rotation angle (degrees) 139.93094629  
Shift along axis -294.36490032  
  
Average map value = 0.5232 for 10778 atoms, 7734 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4589, correlation about mean = 0.2021, overlap = 209  
steps = 60, shift = 0.0366, angle = 0.0831 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.79859974 0.55968124 -0.22134871 248.28823728  
0.56271735 -0.56386127 0.60449116 180.47781268  
0.21351246 -0.60730330 -0.76524187 180.71515324  
Axis -0.94122711 -0.33776613 0.00235821  
Axis point 0.00000000 80.83136865 74.95848060  
Rotation angle (degrees) 139.92939005  
Shift along axis -294.22874855  
  
Average map value = 0.5233 for 10778 atoms, 7737 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4588, correlation about mean = 0.2019, overlap = 209  
steps = 60, shift = 0.0496, angle = 0.0421 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.79884777 0.55957905 -0.22071118 248.28198186  
0.56219873 -0.56403595 0.60481067 180.41562269  
0.21395040 -0.60723524 -0.76517355 180.75993868  
Axis -0.94129932 -0.33756695 0.00203449  
Axis point 0.00000000 80.82461992 74.93824769  
Rotation angle (degrees) 139.92308657  
Shift along axis -294.24225818  
  
Average map value = 0.5232 for 10778 atoms, 7737 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4589, correlation about mean = 0.2021, overlap = 209  
steps = 76, shift = 0.0348, angle = 0.0166 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.79883709 0.55949196 -0.22097048 248.30088709  
0.56229368 -0.56398402 0.60477084 180.43974738  
0.21374067 -0.60736373 -0.76513020 180.72466097  
Axis -0.94129466 -0.33757908 0.00217570  
Axis point 0.00000000 80.83644833 74.93368965  
Rotation angle (degrees) 139.91932136  
Shift along axis -294.24378006  
  
Average map value = 0.5233 for 10778 atoms, 7736 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4588, correlation about mean = 0.202, overlap = 209  
steps = 44, shift = 0.0251, angle = 0.0539 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.79938281 0.55881560 -0.22070831 248.26588042  
0.56166959 -0.56460740 0.60476912 180.40168008  
0.21334093 -0.60740723 -0.76520723 180.70188211  
Axis -0.94146151 -0.33711321 0.00221661  
Axis point 0.00000000 80.87810265 74.90788907  
Rotation angle (degrees) 139.92620484  
Shift along axis -294.14801425  
  
Average map value = 0.5233 for 10778 atoms, 7735 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4577, correlation about mean = 0.2071, overlap = 207.9  
steps = 44, shift = 0.0649, angle = 0.115 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.58899041 0.76762203 -0.25267887 249.89134862  
0.75941887 -0.41880953 0.49787697 197.49543119  
0.27635708 -0.48513390 -0.82962152 190.96591766  
Axis -0.88055111 -0.47389424 -0.00734814  
Axis point 0.00000000 64.18316681 86.09078219  
Rotation angle (degrees) 146.07001966  
Shift along axis -315.03729590  
  
Average map value = 0.5159 for 10778 atoms, 7773 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4572, correlation about mean = 0.2045, overlap = 206.4  
steps = 64, shift = 4.37, angle = 0.0295 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.57460243 0.33271030 0.74775385 205.70478732  
-0.51954165 -0.55766663 0.64736724 137.15291614  
0.63238317 -0.76046812 -0.14757971 183.71227892  
Axis -0.85336769 0.06993261 -0.51659753  
Axis point 0.00000000 92.12023559 -18.38618748  
Rotation angle (degrees) 124.42465228  
Shift along axis -260.85566776  
  
Average map value = 0.5181 for 10778 atoms, 7613 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4572, correlation about mean = 0.2045, overlap = 206.4  
steps = 52, shift = 5.21, angle = 0.0111 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.57471414 0.33280092 0.74762766 205.71983909  
-0.51944801 -0.55758443 0.64751316 137.15631976  
0.63235858 -0.76048874 -0.14757886 183.70905621  
Axis -0.85339960 0.06986538 -0.51655392  
Axis point 0.00000000 92.11526636 -18.38588073  
Rotation angle (degrees) 124.41788839  
Shift along axis -260.87438273  
  
Average map value = 0.5181 for 10778 atoms, 7614 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208  
steps = 48, shift = 0.00699, angle = 0.0209 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99568228 0.08726398 -0.03164985 228.14045385  
0.08779189 -0.77449454 0.62645888 155.40255504  
0.03015470 -0.62653268 -0.77881161 174.29221404  
Axis -0.99878562 -0.04926569 0.00042081  
Axis point 0.00000000 102.85963849 61.80888857  
Rotation angle (degrees) 141.15192524  
Shift along axis -235.44607611  
  
Average map value = 0.5298 for 10778 atoms, 7666 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208  
steps = 40, shift = 0.0229, angle = 0.028 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99567321 0.08719103 -0.03213275 228.12498977  
0.08803727 -0.77446537 0.62646052 155.42376741  
0.02973608 -0.62657889 -0.77879052 174.27810976  
Axis -0.99878305 -0.04931492 0.00067453  
Axis point 0.00000000 102.87473051 61.82726717  
Rotation angle (degrees) 141.15004418  
Shift along axis -235.39452832  
  
Average map value = 0.5299 for 10778 atoms, 7669 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208.1  
steps = 68, shift = 2.69, angle = 0.02 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99566944 0.08723593 -0.03212753 228.10334276  
0.08805864 -0.77424529 0.62672949 155.41206212  
0.02979878 -0.62684457 -0.77857430 174.29713131  
Axis -0.99878184 -0.04933963 0.00065549  
Axis point 0.00000000 102.88611069 61.82357556  
Rotation angle (degrees) 141.13029461  
Shift along axis -235.37919996  
  
Average map value = 0.5298 for 10778 atoms, 7663 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208.1  
steps = 40, shift = 0.00707, angle = 0.0105 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99567942 0.08717375 -0.03198691 228.10556210  
0.08792505 -0.77431962 0.62665641 155.40272543  
0.02985994 -0.62676140 -0.77863891 174.30215846  
Axis -0.99878470 -0.04928260 0.00059868  
Axis point 0.00000000 102.88130862 61.82314151  
Rotation angle (degrees) 141.13618225  
Shift along axis -235.38264380  
  
Average map value = 0.5298 for 10778 atoms, 7664 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4588, correlation about mean = 0.2019, overlap = 209  
steps = 92, shift = 4.27, angle = 0.0373 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.79833746 0.56018045 -0.22103194 248.29085417  
0.56285748 -0.56358762 0.60461594 180.46630937  
0.21412323 -0.60709707 -0.76523492 180.77510135  
Axis -0.94114786 -0.33798874 0.00207927  
Axis point 0.00000000 80.79151171 74.96947821  
Rotation angle (degrees) 139.92857241  
Shift along axis -294.29810498  
  
Average map value = 0.5232 for 10778 atoms, 7736 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4589, correlation about mean = 0.2021, overlap = 209  
steps = 44, shift = 0.0509, angle = 0.0411 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.79818658 0.56017682 -0.22158539 248.28230372  
0.56328306 -0.56361602 0.60419299 180.52167346  
0.21356589 -0.60707406 -0.76540890 180.73350956  
Axis -0.94110852 -0.33809603 0.00241344  
Axis point 0.00000000 80.80217326 74.99156866  
Rotation angle (degrees) 139.94429618  
Shift along axis -294.25806382  
  
Average map value = 0.5233 for 10778 atoms, 7734 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4577, correlation about mean = 0.2071, overlap = 207.9  
steps = 44, shift = 0.0648, angle = 0.114 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.58898044 0.76763026 -0.25267725 249.89126085  
0.75942583 -0.41880332 0.49787165 197.49601354  
0.27635934 -0.48512631 -0.82962526 190.96653522  
Axis -0.88054826 -0.47389951 -0.00734935  
Axis point 0.00000000 64.18227260 86.09123812  
Rotation angle (degrees) 146.07040210  
Shift along axis -315.03805922  
  
Average map value = 0.5159 for 10778 atoms, 7773 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208  
steps = 68, shift = 3.68, angle = 0.0281 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99567788 0.08725833 -0.03180438 228.12663855  
0.08788730 -0.77454897 0.62637825 155.40468678  
0.03002272 -0.62646622 -0.77887021 174.30063841  
Axis -0.99878441 -0.04928939 0.00050142  
Axis point 0.00000000 102.85861097 61.82645818  
Rotation angle (degrees) 141.15728725  
Shift along axis -235.42173511  
  
Average map value = 0.5298 for 10778 atoms, 7670 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.447, correlation about mean = 0.1915, overlap = 201.8  
steps = 80, shift = 12.3, angle = 0.0145 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.62232009 -0.25342070 -0.74060491 174.04943070  
0.56296960 0.51247026 -0.64841303 238.26442870  
0.54385929 -0.82045855 -0.17625246 179.90261659  
Axis -0.11232717 -0.83861660 0.53301482  
Axis point 2.78421493 0.00000000 210.18393586  
Rotation angle (degrees) 130.01971280  
Shift along axis -123.47222515  
  
Average map value = 0.5049 for 10778 atoms, 7587 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.447, correlation about mean = 0.1915, overlap = 201.8  
steps = 72, shift = 9.67, angle = 0.00596 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.62237040 -0.25343956 -0.74055618 174.04813183  
0.56296685 0.51239142 -0.64847772 238.26640017  
0.54380456 -0.82050196 -0.17621924 179.90026731  
Axis -0.11231919 -0.83859316 0.53305338  
Axis point 2.78877883 0.00000000 210.18884774  
Rotation angle (degrees) 130.02330161  
Shift along axis -123.46107220  
  
Average map value = 0.5049 for 10778 atoms, 7587 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.447, correlation about mean = 0.1915, overlap = 201.8  
steps = 48, shift = 2.07, angle = 0.0116 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.62247749 -0.25355164 -0.74042779 174.03496094  
0.56283438 0.51235162 -0.64862414 238.25559186  
0.54381911 -0.82049219 -0.17621983 179.89795074  
Axis -0.11222628 -0.83858666 0.53308318  
Axis point 2.80846713 0.00000000 210.18436002  
Rotation angle (degrees) 130.02881918  
Shift along axis -123.42868436  
  
Average map value = 0.5049 for 10778 atoms, 7587 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.447, correlation about mean = 0.1915, overlap = 201.8  
steps = 76, shift = 22.9, angle = 0.00303 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.62245579 -0.25351505 -0.74045856 174.03461779  
0.56286924 0.51235975 -0.64858746 238.26054589  
0.54380787 -0.82049842 -0.17622553 179.89793410  
Axis -0.11225281 -0.83858831 0.53307500  
Axis point 2.80167010 0.00000000 210.18410599  
Rotation angle (degrees) 130.02791635  
Shift along axis -123.43929328  
  
Average map value = 0.5049 for 10778 atoms, 7587 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.447, correlation about mean = 0.1913, overlap = 201.8  
steps = 64, shift = 9.36, angle = 0.0393 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.62290526 -0.25360586 -0.74004938 173.95978287  
0.56268264 0.51196717 -0.64905921 238.26845559  
0.54348622 -0.82071538 -0.17620749 179.87742694  
Axis -0.11213715 -0.83849024 0.53325357  
Axis point 2.82770073 0.00000000 210.16977407  
Rotation angle (degrees) 130.05875186  
Shift along axis -123.37284887  
  
Average map value = 0.5049 for 10778 atoms, 7595 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.447, correlation about mean = 0.1915, overlap = 201.8  
steps = 52, shift = 2.95, angle = 0.0495 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.62235300 -0.25345816 -0.74056443 174.05111067  
0.56291818 0.51247156 -0.64845665 238.25880087  
0.54387485 -0.82044617 -0.17626207 179.90291074  
Axis -0.11229315 -0.83861930 0.53301775  
Axis point 2.79430728 0.00000000 210.18272248  
Rotation angle (degrees) 130.02125515  
Shift along axis -123.46172940  
  
Average map value = 0.5049 for 10778 atoms, 7586 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4416, correlation about mean = 0.1808, overlap = 195.9  
steps = 40, shift = 0.0101, angle = 0.0592 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
-0.29717185 -0.18714174 -0.93630488 186.93443380  
0.83083180 0.43256329 -0.35015355 239.80392939  
0.47053951 -0.88196769 0.02693762 181.20371460  
Axis -0.29282915 -0.77464102 0.56051975  
Axis point -58.88291155 -0.00000000 237.77713611  
Rotation angle (degrees) 114.76108700  
Shift along axis -138.93355070  
  
Average map value = 0.4817 for 10778 atoms, 7750 outside contour  

> select down

Nothing selected  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4342, correlation about mean = 0.1884, overlap = 195.7  
steps = 28, shift = 0.0441, angle = 0.0904 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.29840845 -0.70750554 0.64061554 150.86584207  
-0.79637225 -0.55451807 -0.24145588 154.46433817  
0.52606429 -0.43811605 -0.72891067 207.01290761  
Axis -0.80491355 0.46884863 -0.36372400  
Axis point 0.00000000 127.33273152 61.31734174  
Rotation angle (degrees) 172.98308879  
Shift along axis -124.30912950  
  
Average map value = 0.5018 for 10778 atoms, 7973 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4342, correlation about mean = 0.1885, overlap = 195.7  
steps = 28, shift = 0.064, angle = 0.0347 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.29825848 -0.70717068 0.64105497 150.81362734  
-0.79621749 -0.55472608 -0.24148848 154.48064558  
0.52638351 -0.43839327 -0.72851343 207.03346077  
Axis -0.80486463 0.46872908 -0.36398622  
Axis point 0.00000000 127.32484139 61.30116435  
Rotation angle (degrees) 172.97388785  
Shift along axis -124.33231046  
  
Average map value = 0.502 for 10778 atoms, 7977 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4342, correlation about mean = 0.1884, overlap = 195.7  
steps = 68, shift = 7.04, angle = 0.0143 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.29824660 -0.70732903 0.64088576 150.84472432  
-0.79630626 -0.55458874 -0.24151118 154.47053545  
0.52625593 -0.43831154 -0.72865476 207.01355670  
Axis -0.80486180 0.46880592 -0.36389352  
Axis point 0.00000000 127.33274754 61.29720745  
Rotation angle (degrees) 172.97760815  
Shift along axis -124.32334733  
  
Average map value = 0.5019 for 10778 atoms, 7976 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4342, correlation about mean = 0.1884, overlap = 195.7  
steps = 40, shift = 0.0344, angle = 0.0321 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.29806463 -0.70702909 0.64130125 150.81313234  
-0.79619928 -0.55473375 -0.24153087 154.47477783  
0.52652083 -0.43861187 -0.72828258 207.01457000  
Axis -0.80480258 0.46871885 -0.36413658  
Axis point 0.00000000 127.32901348 61.26647565  
Rotation angle (degrees) 172.96702319  
Shift along axis -124.35113453  
  
Average map value = 0.5019 for 10778 atoms, 7977 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4341, correlation about mean = 0.1884, overlap = 195.7  
steps = 28, shift = 0.0269, angle = 0.0568 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.29750118 -0.70663124 0.64200101 150.77777432  
-0.79614882 -0.55474881 -0.24166257 154.48225702  
0.52691565 -0.43923353 -0.72762207 206.99216964  
Axis -0.80462237 0.46869366 -0.36456701  
Axis point 0.00000000 127.34491532 61.19066850  
Rotation angle (degrees) 172.94786311  
Shift along axis -124.37683178  
  
Average map value = 0.5019 for 10778 atoms, 7977 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4043, correlation about mean = 0.1089, overlap = 172.6  
steps = 44, shift = 0.0261, angle = 0.078 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.68750804 -0.67334361 0.27192093 177.97261516  
-0.72471790 -0.61248400 0.31566961 137.77724738  
-0.04600685 -0.41409143 -0.90907189 191.50087286  
Axis -0.91487222 0.39857334 -0.06440589  
Axis point 0.00000000 128.55010263 68.37097667  
Rotation angle (degrees) 156.49480508  
Shift along axis -120.24164701  
  
Average map value = 0.4311 for 10778 atoms, 7726 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4012, correlation about mean = 0.1457, overlap = 162.9  
steps = 64, shift = 0.00247, angle = 0.00212 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.53897189 0.48176411 -0.69095046 228.19835799  
0.77379651 0.04089931 0.63211247 225.45181486  
0.33278855 -0.87534595 -0.35074388 172.93272974  
Axis -0.81684305 -0.55473112 0.15824293  
Axis point 0.00000000 124.06911388 80.90835541  
Rotation angle (degrees) 112.67083127  
Shift along axis -284.10199704  
  
Average map value = 0.4097 for 10778 atoms, 8248 outside contour  

> select down

189 atoms, 203 bonds, 6 residues, 1 model selected  

> select down

189 atoms, 203 bonds, 6 residues, 1 model selected  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208  
steps = 48, shift = 0.00725, angle = 0.0214 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99568020 0.08727749 -0.03167713 228.14117241  
0.08781959 -0.77449481 0.62645463 155.40392159  
0.03014169 -0.62653039 -0.77881393 174.29176443  
Axis -0.99878504 -0.04927729 0.00043212  
Axis point 0.00000000 102.85920160 61.81033803  
Rotation angle (degrees) 141.15213895  
Shift along axis -235.44655991  
  
Average map value = 0.5298 for 10778 atoms, 7666 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.203, overlap = 208.1  
steps = 56, shift = 6.3, angle = 0.0145 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99567800 0.08721753 -0.03191067 228.09264202  
0.08792143 -0.77453242 0.62639385 155.40201854  
0.02991675 -0.62649225 -0.77885329 174.32629758  
Axis -0.99878445 -0.04928801 0.00056114  
Axis point 0.00000000 102.86659169 61.84504136  
Rotation angle (degrees) 141.15575448  
Shift along axis -235.37701860  
  
Average map value = 0.5298 for 10778 atoms, 7664 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208  
steps = 40, shift = 0.0464, angle = 0.0059 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99568102 0.08720316 -0.03185578 228.12671440  
0.08787328 -0.77448261 0.62646218 155.40649783  
0.02995781 -0.62655582 -0.77880057 174.29458546  
Axis -0.99878526 -0.04927184 0.00053416  
Axis point 0.00000000 102.86723077 61.82158502  
Rotation angle (degrees) 141.15093455  
Shift along axis -235.41366465  
  
Average map value = 0.5299 for 10778 atoms, 7670 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208.1  
steps = 44, shift = 0.0439, angle = 0.0254 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99567565 0.08713942 -0.03219613 228.08801929  
0.08802866 -0.77429430 0.62667311 155.42275549  
0.02967873 -0.62679739 -0.77861686 174.29188075  
Axis -0.99878363 -0.04930279 0.00070856  
Axis point 0.00000000 102.89393160 61.82612736  
Rotation angle (degrees) 141.13419185  
Shift along axis -235.34985948  
  
Average map value = 0.5299 for 10778 atoms, 7661 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208  
steps = 48, shift = 0.0492, angle = 0.0309 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99567737 0.08726927 -0.03178863 228.13300903  
0.08788426 -0.77451455 0.62642116 155.40505845  
0.03004664 -0.62650714 -0.77883631 174.29715352  
Axis -0.99878426 -0.04929260 0.00049025  
Axis point 0.00000000 102.85985053 61.82139502  
Rotation angle (degrees) 141.15419175  
Shift along axis -235.43052892  
  
Average map value = 0.5298 for 10778 atoms, 7667 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208  
steps = 44, shift = 0.0164, angle = 0.0228 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99565016 0.08747680 -0.03206930 228.14896440  
0.08822742 -0.77460388 0.62626244 155.42202136  
0.02994251 -0.62636773 -0.77895244 174.28850132  
Axis -0.99877668 -0.04944472 0.00059850  
Axis point 0.00000000 102.84462260 61.84025145  
Rotation angle (degrees) 141.16482033  
Shift along axis -235.45035148  
  
Average map value = 0.5299 for 10778 atoms, 7669 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208  
steps = 44, shift = 0.0168, angle = 0.0368 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99569224 0.08720674 -0.03149321 228.14372126  
0.08765390 -0.77460585 0.62634054 155.39320054  
0.03022637 -0.62640296 -0.77891315 174.29920793  
Axis -0.99878850 -0.04920784 0.00035651  
Axis point 0.00000000 102.85203996 61.81095849  
Rotation angle (degrees) 141.16119327  
Shift along axis -235.45174889  
  
Average map value = 0.5298 for 10778 atoms, 7666 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208.1  
steps = 40, shift = 0.0167, angle = 0.0199 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99568757 0.08717090 -0.03173902 228.13679041  
0.08777266 -0.77444247 0.62652591 155.39266057  
0.03003486 -0.62660993 -0.77875407 174.29726016  
Axis -0.99878707 -0.04923565 0.00047962  
Axis point 0.00000000 102.86600534 61.81479379  
Rotation angle (degrees) 141.14667829  
Shift along axis -235.42733887  
  
Average map value = 0.5298 for 10778 atoms, 7667 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208  
steps = 48, shift = 0.0183, angle = 0.0135 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99567902 0.08723987 -0.03181754 228.12883532  
0.08788190 -0.77456536 0.62635867 155.40641125  
0.02999876 -0.62644841 -0.77888539 174.29762681  
Axis -0.99878476 -0.04928227 0.00051184  
Axis point 0.00000000 102.85893230 61.82652974  
Rotation angle (degrees) 141.15867904  
Shift along axis -235.42117214  
  
Average map value = 0.5299 for 10778 atoms, 7668 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208.1  
steps = 44, shift = 0.0432, angle = 0.0301 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99569029 0.08705989 -0.03195757 228.09416876  
0.08781532 -0.77427322 0.62672910 155.39877354  
0.02981916 -0.62683448 -0.77858162 174.30394420  
Axis -0.99878772 -0.04922114 0.00060189  
Axis point 0.00000000 102.89148341 61.81874126  
Rotation angle (degrees) 141.13095227  
Shift along axis -235.36164820  
  
Average map value = 0.5298 for 10778 atoms, 7663 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208  
steps = 56, shift = 1.16, angle = 0.0277 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99571741 0.08688103 -0.03159747 228.11325560  
0.08745836 -0.77447272 0.62653248 155.39820312  
0.02996249 -0.62661280 -0.77875455 174.28946123  
Axis -0.99879547 -0.04906519 0.00046015  
Axis point 0.00000000 102.88638584 61.80045796  
Rotation angle (degrees) 141.14671879  
Shift along axis -235.38293001  
  
Average map value = 0.5299 for 10778 atoms, 7665 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208  
steps = 60, shift = 0.0178, angle = 0.0187 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99568906 0.08719584 -0.03162363 228.14070650  
0.08772223 -0.77449801 0.62646432 155.39911872  
0.03013273 -0.62653780 -0.77880832 174.29537732  
Axis -0.99878753 -0.04922695 0.00041959  
Axis point 0.00000000 102.86305598 61.80911780  
Rotation angle (degrees) 141.15162431  
Shift along axis -235.44078499  
  
Average map value = 0.5298 for 10778 atoms, 7666 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208.1  
steps = 44, shift = 0.0497, angle = 0.0325 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99569249 0.08703903 -0.03194580 228.09785090  
0.08778888 -0.77421602 0.62680346 155.40089091  
0.02982349 -0.62690803 -0.77852224 174.29762679  
Axis -0.99878830 -0.04920945 0.00059738  
Axis point 0.00000000 102.89711569 61.81041696  
Rotation angle (degrees) 141.12553003  
Shift along axis -235.36453499  
  
Average map value = 0.5298 for 10778 atoms, 7663 outside contour  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5316, steps = 52  
shifted from previous position = 0.296  
rotated from previous position = 1.96 degrees  
atoms outside contour = 7722, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99806737 0.05324783 -0.03203243 226.94871535  
0.06159132 -0.77932345 0.62358750 154.52170590  
0.00824114 -0.62435530 -0.78109701 173.54844723  
Axis -0.99945735 -0.03225445 0.00668217  
Axis point 0.00000000 104.30032378 61.74241366  
Rotation angle (degrees) 141.36842576  
Shift along axis -230.64989548  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5316, steps = 48  
shifted from previous position = 0.0167  
rotated from previous position = 0.0219 degrees  
atoms outside contour = 7720, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99808726 0.05306853 -0.03170835 226.93553594  
0.06124818 -0.77928625 0.62366778 154.49928987  
0.00838733 -0.62441699 -0.78104614 173.55867098  
Axis -0.99946292 -0.03210851 0.00655024  
Axis point 0.00000000 104.30644125 61.72703046  
Rotation angle (degrees) 141.36347151  
Shift along axis -230.63754449  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5316, steps = 60  
shifted from previous position = 0.00923  
rotated from previous position = 0.00885 degrees  
atoms outside contour = 7721, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99808300 0.05313464 -0.03173172 226.93317623  
0.06131326 -0.77919678 0.62377317 154.51037923  
0.00841878 -0.62452301 -0.78096103 173.55229712  
Axis -0.99946170 -0.03214693 0.00654830  
Axis point 0.00000000 104.31320887 61.71758150  
Rotation angle (degrees) 141.35565738  
Shift along axis -230.64158138  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5316, steps = 76  
shifted from previous position = 0.0516  
rotated from previous position = 0.00515 degrees  
atoms outside contour = 7721, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99808832 0.05306480 -0.03168120 226.88496719  
0.06122694 -0.77918565 0.62379555 154.49675509  
0.00841613 -0.62454284 -0.78094520 173.57341454  
Axis -0.99946319 -0.03210331 0.00653490  
Axis point 0.00000000 104.31645553 61.72575856  
Rotation angle (degrees) 141.35417647  
Shift along axis -230.58874631  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5316, steps = 64  
shifted from previous position = 0.0563  
rotated from previous position = 0.0273 degrees  
atoms outside contour = 7720, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99807654 0.05344254 -0.03141648 226.94367435  
0.06135555 -0.77910298 0.62388617 154.51097583  
0.00886547 -0.62461376 -0.78088350 173.55561773  
Axis -0.99945986 -0.03224685 0.00633459  
Axis point 0.00000000 104.30053917 61.69380580  
Rotation angle (degrees) 141.34809500  
Shift along axis -230.70418215  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5316, steps = 60  
shifted from previous position = 0.0154  
rotated from previous position = 0.0271 degrees  
atoms outside contour = 7720, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99808865 0.05307216 -0.03165858 226.91972142  
0.06121895 -0.77921395 0.62376098 154.50435125  
0.00843561 -0.62450690 -0.78097373 173.55539556  
Axis -0.99946329 -0.03210262 0.00652297  
Axis point 0.00000000 104.31394495 61.71622896  
Rotation angle (degrees) 141.35676901  
Shift along axis -230.62583045  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5316, steps = 64  
shifted from previous position = 0.0114  
rotated from previous position = 0.00578 degrees  
atoms outside contour = 7721, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99808393 0.05311066 -0.03174262 226.93122126  
0.06130183 -0.77923467 0.62372695 154.51154886  
0.00839168 -0.62447778 -0.78099749 173.55154243  
Axis -0.99946197 -0.03213632 0.00655883  
Axis point 0.00000000 104.31241997 61.72016523  
Rotation angle (degrees) 141.35902586  
Shift along axis -230.63626262  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5316, steps = 48  
shifted from previous position = 0.0175  
rotated from previous position = 0.0252 degrees  
atoms outside contour = 7719, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99808915 0.05315118 -0.03151002 226.91461525  
0.06118503 -0.77900850 0.62402087 154.51778068  
0.00862095 -0.62475644 -0.78077210 173.53818498  
Axis -0.99946337 -0.03211896 0.00642992  
Axis point 0.00000000 104.32815874 61.68194849  
Rotation angle (degrees) 141.33807470  
Shift along axis -230.63996028  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5316, steps = 48  
shifted from previous position = 0.0172  
rotated from previous position = 0.0261 degrees  
atoms outside contour = 7721, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99808505 0.05309642 -0.03173143 226.93094153  
0.06128392 -0.77925013 0.62370940 154.51181737  
0.00839009 -0.62445970 -0.78101197 173.55136468  
Axis -0.99946229 -0.03212701 0.00655608  
Axis point 0.00000000 104.31232766 61.72029435  
Rotation angle (degrees) 141.36034809  
Shift along axis -230.63510523  
  

> color zone #10 near #13 distance 17.8

[Repeated 1 time(s)]

> undo

[Repeated 1 time(s)]

> select #13:63-68

189 atoms, 203 bonds, 6 residues, 1 model selected  

> color zone #10 near sel & #13 distance 17.8

[Repeated 1 time(s)]

> undo

[Repeated 1 time(s)]

> select add #13

10778 atoms, 11624 bonds, 336 residues, 1 model selected  

> select subtract #13

Nothing selected  

> scalebar off

> scalebar 50

> select #13:63-68

189 atoms, 203 bonds, 6 residues, 1 model selected  

> color sel magenta

> color sel lime

> select add #13

10778 atoms, 11624 bonds, 336 residues, 1 model selected  

> ui mousemode right "translate selected models"

> view matrix models
> #13,0.59289,-0.80001,0.091995,343.21,-0.80152,-0.57522,0.16334,117.13,-0.077759,-0.17058,-0.98227,-14.948

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5316, steps = 72  
shifted from previous position = 3.17  
rotated from previous position = 0.0302 degrees  
atoms outside contour = 7719, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99808640 0.05321000 -0.03149762 226.92630976  
0.06122266 -0.77896694 0.62406906 154.50503271  
0.00867119 -0.62480326 -0.78073408 173.54479902  
Axis -0.99946259 -0.03214678 0.00641247  
Axis point 0.00000000 104.32195928 61.68421729  
Rotation angle (degrees) 141.33455115  
Shift along axis -230.65834560  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5316, steps = 44  
shifted from previous position = 0.0436  
rotated from previous position = 0.00444 degrees  
atoms outside contour = 7719, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99809050 0.05313990 -0.03148622 226.88633216  
0.06116108 -0.77898953 0.62404690 154.49229013  
0.00863443 -0.62478106 -0.78075225 173.56449596  
Axis -0.99946374 -0.03210942 0.00641952  
Axis point 0.00000000 104.32268613 61.69643727  
Rotation angle (degrees) 141.33623264  
Shift along axis -230.61112047  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5316, steps = 64  
shifted from previous position = 0.0553  
rotated from previous position = 0.0335 degrees  
atoms outside contour = 7721, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99807685 0.05317531 -0.03185676 226.93755727  
0.06142399 -0.77925658 0.62368756 154.51690303  
0.00834026 -0.62444493 -0.78102430 173.55069087  
Axis -0.99945999 -0.03218834 0.00660525  
Axis point 0.00000000 104.30867983 61.72802546  
Rotation angle (degrees) 141.36158598  
Shift along axis -230.64230811  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5316, steps = 60  
shifted from previous position = 0.0496  
rotated from previous position = 0.0301 degrees  
atoms outside contour = 7721, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99808744 0.05316542 -0.03153990 226.89246293  
0.06121479 -0.77900544 0.62402178 154.49575524  
0.00860670 -0.62475905 -0.78077016 173.56227346  
Axis -0.99946289 -0.03213137 0.00644232  
Axis point 0.00000000 104.32093952 61.69944402  
Rotation angle (degrees) 141.33792352  
Shift along axis -230.61661306  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5316, steps = 64  
shifted from previous position = 0.0486  
rotated from previous position = 0.028 degrees  
atoms outside contour = 7721, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99808029 0.05314178 -0.03180494 226.93588399  
0.06136536 -0.77925367 0.62369697 154.51314731  
0.00836033 -0.62445142 -0.78101890 173.55157324  
Axis -0.99946096 -0.03216254 0.00658507  
Axis point 0.00000000 104.30953183 61.72540869  
Rotation angle (degrees) 141.36104660  
Shift along axis -230.64024202  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5316, steps = 76  
shifted from previous position = 0.0503  
rotated from previous position = 0.0305 degrees  
atoms outside contour = 7721, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99809101 0.05312687 -0.03149183 226.88953205  
0.06115450 -0.77899669 0.62403861 154.49300128  
0.00862126 -0.62477324 -0.78075865 173.56306328  
Axis -0.99946389 -0.03210379 0.00642477  
Axis point 0.00000000 104.32307462 61.69641828  
Rotation angle (degrees) 141.33683094  
Shift along axis -230.61260269  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5316, steps = 60  
shifted from previous position = 0.0394  
rotated from previous position = 0.0264 degrees  
atoms outside contour = 7721, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99808354 0.05312064 -0.03173829 226.92534075  
0.06130690 -0.77923239 0.62372931 154.50731802  
0.00840148 -0.62447978 -0.78099579 173.55527718  
Axis -0.99946186 -0.03214058 0.00655487  
Axis point 0.00000000 104.31054931 61.72232958  
Rotation angle (degrees) 141.35886084  
Shift along axis -230.63154567  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5316, steps = 84  
shifted from previous position = 0.0102  
rotated from previous position = 0.00723 degrees  
atoms outside contour = 7721, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99808982 0.05306172 -0.03163909 226.93082308  
0.06119851 -0.77920656 0.62377221 154.50797478  
0.00844512 -0.62451701 -0.78096555 173.55034087  
Axis -0.99946362 -0.03209409 0.00651486  
Axis point 0.00000000 104.31599610 61.71135402  
Rotation angle (degrees) 141.35600056  
Shift along axis -230.63723932  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5316, steps = 76  
shifted from previous position = 0.0477  
rotated from previous position = 0.00208 degrees  
atoms outside contour = 7723, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99808932 0.05305075 -0.03167323 226.88948626  
0.06121131 -0.77920905 0.62376786 154.49632723  
0.00841136 -0.62451484 -0.78096764 173.57018267  
Axis -0.99946348 -0.03209456 0.00653392  
Axis point 0.00000000 104.31478596 61.72527687  
Rotation angle (degrees) 141.35623358  
Shift along axis -230.59215433  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5316, steps = 48  
shifted from previous position = 0.0569  
rotated from previous position = 0.0152 degrees  
atoms outside contour = 7720, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99807681 0.05316606 -0.03187348 226.94398819  
0.06142749 -0.77927789 0.62366059 154.51896673  
0.00831935 -0.62441912 -0.78104516 173.54798361  
Axis -0.99945999 -0.03218635 0.00661574  
Axis point 0.00000000 104.30812754 61.72886262  
Rotation angle (degrees) 141.36352257  
Shift along axis -230.64668938  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5316, steps = 64  
shifted from previous position = 0.0617  
rotated from previous position = 0.0177 degrees  
atoms outside contour = 7721, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99808837 0.05303843 -0.03172384 226.88517840  
0.06123238 -0.77913968 0.62385243 154.49643512  
0.00837093 -0.62460242 -0.78089803 173.56615714  
Axis -0.99946319 -0.03209827 0.00655975  
Axis point 0.00000000 104.32025912 61.72169349  
Rotation angle (degrees) 141.34990245  
Shift along axis -230.58390320  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5316, steps = 48  
shifted from previous position = 0.0207  
rotated from previous position = 0.0428 degrees  
atoms outside contour = 7717, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99811102 0.05296546 -0.03112767 226.86166472  
0.06079913 -0.77888597 0.62421152 154.47535695  
0.00881682 -0.62492497 -0.78063502 173.56853602  
Axis -0.99946947 -0.03196072 0.00626795  
Axis point 0.00000000 104.33538271 61.67017806  
Rotation angle (degrees) 141.32516870  
Shift along axis -230.59053325  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5316, steps = 60  
shifted from previous position = 0.0608  
rotated from previous position = 0.0302 degrees  
atoms outside contour = 7719, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99808628 0.05318974 -0.03153588 226.92568984  
0.06123144 -0.77901643 0.62400642 154.50389602  
0.00862384 -0.62474327 -0.78078260 173.54600132  
Axis -0.99946257 -0.03214267 0.00643634  
Axis point 0.00000000 104.31917730 61.69077425  
Rotation angle (degrees) 141.33905169  
Shift along axis -230.65289855  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5316, steps = 40  
shifted from previous position = 0.0443  
rotated from previous position = 0.0286 degrees  
atoms outside contour = 7721, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99805638 0.05354024 -0.03188705 226.90177455  
0.06172408 -0.77895968 0.62402874 154.53809725  
0.00857200 -0.62478410 -0.78075050 173.54352570  
Axis -0.99945416 -0.03238033 0.00654971  
Axis point 0.00000000 104.31637900 61.70374282  
Rotation angle (degrees) 141.33634809  
Shift along axis -230.64525586  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5316, steps = 48  
shifted from previous position = 0.0413  
rotated from previous position = 0.0428 degrees  
atoms outside contour = 7717, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99809880 0.05308036 -0.03132317 226.87534813  
0.06101127 -0.77889434 0.62418037 154.48593380  
0.00873436 -0.62490479 -0.78065211 173.56616573  
Axis -0.99946604 -0.03205237 0.00634599  
Axis point 0.00000000 104.33141988 61.68098433  
Rotation angle (degrees) 141.32689577  
Shift along axis -230.60439739  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5316, steps = 60  
shifted from previous position = 0.0562  
rotated from previous position = 0.0364 degrees  
atoms outside contour = 7721, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99808535 0.05310926 -0.03170024 226.92664595  
0.06127377 -0.77919900 0.62377428 154.50991646  
0.00842747 -0.62452241 -0.78096142 173.55255076  
Axis -0.99946236 -0.03212869 0.00653701  
Axis point 0.00000000 104.31470514 61.71573269  
Rotation angle (degrees) 141.35566922  
Shift along axis -230.63432816  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5316, steps = 44  
shifted from previous position = 0.0474  
rotated from previous position = 0.0227 degrees  
atoms outside contour = 7719, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99809195 0.05311815 -0.03147676 226.88487234  
0.06113833 -0.77900215 0.62403338 154.49142981  
0.00862711 -0.62476717 -0.78076344 173.56494468  
Axis -0.99946416 -0.03209670 0.00641887  
Axis point 0.00000000 104.32288080 61.69695161  
Rotation angle (degrees) 141.33725771  
Shift along axis -230.60787172  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5316, steps = 60  
shifted from previous position = 0.0448  
rotated from previous position = 0.0257 degrees  
atoms outside contour = 7721, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99808447 0.05311075 -0.03172559 226.92530593  
0.06129117 -0.77922768 0.62373674 154.50762631  
0.00840574 -0.62448650 -0.78099037 173.55438240  
Axis -0.99946212 -0.03213347 0.00655013  
Axis point 0.00000000 104.31158980 61.72064135  
Rotation angle (degrees) 141.35835346  
Shift along axis -230.63131130  
  

> select subtract #13

Nothing selected  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5316, steps = 116  
shifted from previous position = 22  
rotated from previous position = 0.0288 degrees  
atoms outside contour = 7721, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99809631 0.05301734 -0.03150866 226.88792540  
0.06107896 -0.77896178 0.62408958 154.49358177  
0.00854361 -0.62482607 -0.78071723 173.55840474  
Axis -0.99946537 -0.03205249 0.00645145  
Axis point 0.00000000 104.33263292 61.69219360  
Rotation angle (degrees) 141.33308779  
Shift along axis -230.59882381  
  

> scalebar off

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208  
steps = 100, shift = 22.3, angle = 1.98 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99567792 0.08725618 -0.03180723 228.14468265  
0.08788674 -0.77453569 0.62639467 155.41038747  
0.03002105 -0.62648282 -0.77885686 174.28681527  
Axis -0.99878443 -0.04928903 0.00050268  
Axis point 0.00000000 102.85971265 61.81797170  
Rotation angle (degrees) 141.15607097  
Shift along axis -235.43977425  
  
Average map value = 0.5299 for 10778 atoms, 7666 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.203, overlap = 208.1  
steps = 44, shift = 0.0703, angle = 0.0333 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99568965 0.08704447 -0.03201971 228.08662725  
0.08784019 -0.77422717 0.62678249 155.39974989  
0.02976750 -0.62689350 -0.77853608 174.30451995  
Axis -0.99878751 -0.04922507 0.00063394  
Axis point 0.00000000 102.89670444 61.81962970  
Rotation angle (degrees) 141.12680101  
Shift along axis -235.34913963  
  
Average map value = 0.5298 for 10778 atoms, 7662 outside contour  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5316, steps = 52  
shifted from previous position = 0.302  
rotated from previous position = 1.97 degrees  
atoms outside contour = 7720, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99807268 0.05319649 -0.03195211 226.94508480  
0.06150089 -0.77931414 0.62360806 154.51912019  
0.00827311 -0.62437129 -0.78108389 173.54913666  
Axis -0.99945884 -0.03221483 0.00665067  
Axis point 0.00000000 104.30348225 61.73711779  
Rotation angle (degrees) 141.36715248  
Shift along axis -230.64586126  
  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208  
steps = 48, shift = 0.268, angle = 1.96 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99569634 0.08701445 -0.03189281 228.13206906  
0.08773830 -0.77425793 0.62675877 155.40336946  
0.02984389 -0.62685967 -0.77856040 174.26938961  
Axis -0.99878941 -0.04918718 0.00057671  
Axis point 0.00000000 102.89120185 61.79537233  
Rotation angle (degrees) 141.12900929  
Shift along axis -235.39924533  
  
Average map value = 0.5299 for 10778 atoms, 7669 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208  
steps = 44, shift = 0.00944, angle = 0.0266 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99567940 0.08725956 -0.03175176 228.13421604  
0.08785178 -0.77447920 0.62646941 155.40157557  
0.03007445 -0.62655218 -0.77879900 174.29767095  
Axis -0.99878481 -0.04928173 0.00047206  
Axis point 0.00000000 102.86156373 61.81736749  
Rotation angle (degrees) 141.15078107  
Shift along axis -235.43316926  
  
Average map value = 0.5298 for 10778 atoms, 7669 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.203, overlap = 208.1  
steps = 40, shift = 0.0432, angle = 0.0152 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99569495 0.08712394 -0.03163634 228.09408149  
0.08766797 -0.77437257 0.62662696 155.39487837  
0.03009598 -0.62670284 -0.77867694 174.31736279  
Axis -0.99878910 -0.04919500 0.00043354  
Axis point 0.00000000 102.88042847 61.81221184  
Rotation angle (degrees) 141.13962748  
Shift along axis -235.38695975  
  
Average map value = 0.5298 for 10778 atoms, 7663 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208  
steps = 48, shift = 0.059, angle = 0.023 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99567978 0.08723181 -0.03181592 228.14368607  
0.08787476 -0.77456952 0.62635452 155.40867966  
0.02999447 -0.62644439 -0.77888879 174.28908351  
Axis -0.99878498 -0.04927789 0.00051259  
Axis point 0.00000000 102.85845363 61.82211330  
Rotation angle (degrees) 141.15898972  
Shift along axis -235.43535860  
  
Average map value = 0.5299 for 10778 atoms, 7666 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208.1  
steps = 136, shift = 28.2, angle = 0.0345 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99569690 0.08698798 -0.03194752 228.09104563  
0.08775142 -0.77424469 0.62677329 155.39767669  
0.02978662 -0.62687971 -0.77854646 174.30119267  
Axis -0.99878956 -0.04918380 0.00060824  
Axis point 0.00000000 102.89775655 61.81442523  
Rotation angle (degrees) 141.12774301  
Shift along axis -235.35198659  
  
Average map value = 0.5298 for 10778 atoms, 7663 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208.1  
steps = 112, shift = 26.9, angle = 0.00495 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99569652 0.08697728 -0.03198861 228.09035645  
0.08776661 -0.77419596 0.62683136 155.40058435  
0.02975471 -0.62694137 -0.77849802 174.29785616  
Axis -0.99878942 -0.04918641 0.00062880  
Axis point 0.00000000 102.90298413 61.81154199  
Rotation angle (degrees) 141.12332533  
Shift along axis -235.34823221  
  
Average map value = 0.5298 for 10778 atoms, 7663 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4553, correlation about mean = 0.203, overlap = 208.1  
steps = 60, shift = 4.51, angle = 0.0224 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99572385 0.08675247 -0.03174724 228.06844499  
0.08743404 -0.77409345 0.62700441 155.38543741  
0.02981893 -0.62709908 -0.77836854 174.30604087  
Axis -0.99879703 -0.04903272 0.00054282  
Axis point 0.00000000 102.92131563 61.79366773  
Rotation angle (degrees) 141.11149018  
Shift along axis -235.31843805  
  
Average map value = 0.5298 for 10778 atoms, 7663 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4553, correlation about mean = 0.203, overlap = 208.1  
steps = 48, shift = 0.00166, angle = 0.00877 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99571590 0.08678975 -0.03189455 228.07243327  
0.08755594 -0.77409348 0.62698735 155.38957707  
0.02972679 -0.62709388 -0.77837625 174.30283884  
Axis -0.99879479 -0.04907742 0.00061022  
Axis point 0.00000000 102.91986317 61.80133064  
Rotation angle (degrees) 141.11220668  
Shift along axis -235.31731446  
  
Average map value = 0.5298 for 10778 atoms, 7663 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208.1  
steps = 76, shift = 16.1, angle = 0.0494 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99568574 0.08705862 -0.03210265 228.08751154  
0.08791922 -0.77455971 0.62636042 155.40198882  
0.02966473 -0.62648062 -0.77887228 174.32005017  
Axis -0.99878664 -0.04924203 0.00068608  
Axis point 0.00000000 102.87447395 61.85528470  
Rotation angle (degrees) 141.15751527  
Shift along axis -235.34347006  
  
Average map value = 0.5299 for 10778 atoms, 7662 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208.1  
steps = 40, shift = 0.0101, angle = 0.0132 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99568275 0.08715767 -0.03192610 228.09776856  
0.08788251 -0.77449426 0.62644650 155.40145309  
0.02987312 -0.62654776 -0.77881031 174.31768838  
Axis -0.99878576 -0.04926134 0.00057778  
Axis point 0.00000000 102.87172772 61.83887724  
Rotation angle (degrees) 141.15183192  
Shift along axis -235.37536938  
  
Average map value = 0.5298 for 10778 atoms, 7664 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208  
steps = 40, shift = 0.0494, angle = 0.00775 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99567425 0.08727703 -0.03186509 228.13621587  
0.08793677 -0.77447985 0.62645669 155.41371239  
0.02999649 -0.62654895 -0.77880461 174.28776539  
Axis -0.99878336 -0.04931048 0.00052589  
Axis point 0.00000000 102.86437815 61.81792366  
Rotation angle (degrees) 141.15130215  
Shift along axis -235.43052519  
  
Average map value = 0.5299 for 10778 atoms, 7668 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208  
steps = 44, shift = 0.0219, angle = 0.0248 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99569538 0.08718387 -0.03145709 228.14713972  
0.08761191 -0.77457740 0.62638159 155.39112151  
0.03024450 -0.62644132 -0.77888160 174.29619436  
Axis -0.99878936 -0.04919042 0.00034125  
Axis point 0.00000000 102.85418903 61.80536695  
Rotation angle (degrees) 141.15830845  
Shift along axis -235.45521177  
  
Average map value = 0.5298 for 10778 atoms, 7666 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.203, overlap = 208.1  
steps = 40, shift = 0.0725, angle = 0.0388 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99570556 0.08692997 -0.03183530 228.08445301  
0.08763617 -0.77426038 0.62677002 155.38708493  
0.02983637 -0.62686836 -0.77855369 174.30764466  
Axis -0.99879200 -0.04913472 0.00056264  
Axis point 0.00000000 102.89685119 61.81274159  
Rotation angle (degrees) 141.12839430  
Shift along axis -235.34575474  
  
Average map value = 0.5298 for 10778 atoms, 7662 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.203, overlap = 208.1  
steps = 48, shift = 0.0351, angle = 0.0328 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99566669 0.08718716 -0.03234352 228.07762567  
0.08815651 -0.77424709 0.62671347 155.42900415  
0.02959957 -0.62684906 -0.77857827 174.29382285  
Axis -0.99878108 -0.04935341 0.00077234  
Axis point 0.00000000 102.89759679 61.83271318  
Rotation angle (degrees) 141.13068381  
Shift along axis -235.33595439  
  
Average map value = 0.5299 for 10778 atoms, 7665 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208  
steps = 48, shift = 0.0664, angle = 0.0439 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99567730 0.08727954 -0.03176260 228.13433996  
0.08787904 -0.77457947 0.62634162 155.40549422  
0.03006423 -0.62642544 -0.77890134 174.29810343  
Axis -0.99878429 -0.04929222 0.00047795  
Axis point 0.00000000 102.85464793 61.82459860  
Rotation angle (degrees) 141.16013076  
Shift along axis -235.43396857  
  
Average map value = 0.5298 for 10778 atoms, 7667 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208.1  
steps = 48, shift = 0.0603, angle = 0.0398 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99569764 0.08691786 -0.03211499 228.08063602  
0.08780399 -0.77428646 0.62671431 155.39943362  
0.02960655 -0.62683783 -0.77858705 174.30561908  
Axis -0.99878979 -0.04917772 0.00070604  
Axis point 0.00000000 102.90123017 61.82963267  
Rotation angle (degrees) 141.13146936  
Shift along axis -235.32373438  
  
Average map value = 0.5299 for 10778 atoms, 7663 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208  
steps = 44, shift = 0.0622, angle = 0.0381 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99567841 0.08730075 -0.03166954 228.13631073  
0.08783230 -0.77447999 0.62647118 155.40449034  
0.03016406 -0.62654548 -0.77880093 174.29448481  
Axis -0.99878453 -0.04928781 0.00042370  
Axis point 0.00000000 102.85956689 61.81020253  
Rotation angle (degrees) 141.15094999  
Shift along axis -235.44471529  
  
Average map value = 0.5298 for 10778 atoms, 7667 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.203, overlap = 208.1  
steps = 44, shift = 0.043, angle = 0.0183 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99567344 0.08728456 -0.03186959 228.11017186  
0.08793759 -0.77431470 0.62666069 155.39856958  
0.03002079 -0.62675199 -0.77864029 174.31168090  
Axis -0.99878302 -0.04931740 0.00052037  
Axis point 0.00000000 102.87351732 61.82137991  
Rotation angle (degrees) 141.13629390  
Shift along axis -235.40571463  
  
Average map value = 0.5298 for 10778 atoms, 7667 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.203, overlap = 208.1  
steps = 44, shift = 0.0177, angle = 0.0235 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99569179 0.08700251 -0.03206704 228.08639299  
0.08783509 -0.77418287 0.62683792 155.40363547  
0.02971080 -0.62695403 -0.77848951 174.29815481  
Axis -0.99878808 -0.04921308 0.00066324  
Axis point 0.00000000 102.90373901 61.81556274  
Rotation angle (degrees) 141.12255518  
Shift along axis -235.34226152  
  
Average map value = 0.5299 for 10778 atoms, 7662 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208.1  
steps = 44, shift = 0.00978, angle = 0.0169 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99568421 0.08702637 -0.03223716 228.08034231  
0.08796740 -0.77432187 0.62664765 155.40833988  
0.02957301 -0.62677903 -0.77863565 174.30462722  
Axis -0.99878605 -0.04925309 0.00074985  
Axis point 0.00000000 102.89501271 61.83877548  
Rotation angle (degrees) 141.13591786  
Shift along axis -235.32710232  
  
Average map value = 0.5299 for 10778 atoms, 7663 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208  
steps = 28, shift = 0.0647, angle = 0.0233 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99568766 0.08711746 -0.03188279 228.12723976  
0.08782153 -0.77444653 0.62651405 155.41733053  
0.02988887 -0.62661234 -0.77875775 174.27983012  
Axis -0.99878710 -0.04923425 0.00056117  
Axis point 0.00000000 102.87874509 61.81102569  
Rotation angle (degrees) 141.14702761  
Shift along axis -235.40459983  
  
Average map value = 0.5299 for 10778 atoms, 7665 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208  
steps = 48, shift = 0.0127, angle = 0.0186 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99567694 0.08729412 -0.03173383 228.13410568  
0.08787260 -0.77458477 0.62633597 155.40474947  
0.03009499 -0.62641686 -0.77890706 174.29960827  
Axis -0.99878419 -0.04929436 0.00046120  
Axis point 0.00000000 102.85316403 61.82404834  
Rotation angle (degrees) 141.16065050  
Shift along axis -235.43692727  
  
Average map value = 0.5298 for 10778 atoms, 7667 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.203, overlap = 208.1  
steps = 48, shift = 0.061, angle = 0.0358 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99569442 0.08701972 -0.03193834 228.08284100  
0.08777138 -0.77426424 0.62674634 155.39352768  
0.02981065 -0.62685115 -0.77856853 174.31147269  
Axis -0.99878888 -0.04919777 0.00059888  
Axis point 0.00000000 102.89400672 61.82117177  
Rotation angle (degrees) 141.12975626  
Shift along axis -235.34722862  
  
Average map value = 0.5298 for 10778 atoms, 7661 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208.1  
steps = 80, shift = 14.2, angle = 0.00492 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99568922 0.08705308 -0.03200964 228.10045748  
0.08784306 -0.77427928 0.62671772 155.40417688  
0.02977338 -0.62682794 -0.77858865 174.29616398  
Axis -0.99878743 -0.04922685 0.00062943  
Axis point 0.00000000 102.89260237 61.81775211  
Rotation angle (degrees) 141.13159887  
Shift along axis -235.36421957  
  
Average map value = 0.5299 for 10778 atoms, 7663 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208  
steps = 48, shift = 4.79, angle = 0.0334 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99568858 0.08720246 -0.03162049 228.13613770  
0.08772776 -0.77454647 0.62640363 155.39622296  
0.03013248 -0.62647698 -0.77885726 174.29947965  
Axis -0.99878743 -0.04922902 0.00041877  
Axis point 0.00000000 102.85834687 61.81478912  
Rotation angle (degrees) 141.15609466  
Shift along axis -235.43651994  
  
Average map value = 0.5298 for 10778 atoms, 7667 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208.1  
steps = 40, shift = 0.0487, angle = 0.0303 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99567961 0.08717431 -0.03197843 228.10026937  
0.08791851 -0.77428589 0.62669897 155.40010257  
0.02987168 -0.62680292 -0.77860502 174.30641583  
Axis -0.99878473 -0.04928189 0.00059298  
Axis point 0.00000000 102.88337461 61.82282671  
Rotation angle (degrees) 141.13308660  
Shift along axis -235.37811807  
  
Average map value = 0.5298 for 10778 atoms, 7663 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4553, correlation about mean = 0.203, overlap = 208.1  
steps = 48, shift = 0.0162, angle = 0.0236 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99570309 0.08688463 -0.03203576 228.07780332  
0.08772044 -0.77412352 0.62692727 155.39901759  
0.02967079 -0.62704366 -0.77841884 174.29932353  
Axis -0.99879121 -0.04914943 0.00066572  
Axis point 0.00000000 102.91466559 61.80995900  
Rotation angle (degrees) 141.11610565  
Shift along axis -235.32384447  
  
Average map value = 0.5298 for 10778 atoms, 7662 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4553, correlation about mean = 0.203, overlap = 208.1  
steps = 44, shift = 0.00794, angle = 0.0133 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99571375 0.08684271 -0.03181740 228.08053134  
0.08755279 -0.77417832 0.62688303 155.38872860  
0.02980796 -0.62698180 -0.77846343 174.30458424  
Axis -0.99879425 -0.04908906 0.00056563  
Axis point 0.00000000 102.90956843 61.80350321  
Rotation angle (degrees) 141.12015500  
Shift along axis -235.33481750  
  
Average map value = 0.5298 for 10778 atoms, 7663 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208  
steps = 68, shift = 5.26, angle = 0.0424 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99567859 0.08725678 -0.03178483 228.12799994  
0.08787309 -0.77453522 0.62639717 155.40467980  
0.03003901 -0.62648333 -0.77885576 174.29941124  
Axis -0.99878462 -0.04928538 0.00049132  
Axis point 0.00000000 102.85952015 61.82362184  
Rotation angle (degrees) 141.15596857  
Shift along axis -235.42427911  
  
Average map value = 0.5298 for 10778 atoms, 7669 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208.1  
steps = 48, shift = 0.0431, angle = 0.0333 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99569083 0.08701649 -0.03205888 228.08836037  
0.08784422 -0.77425346 0.62674945 155.40505581  
0.02971592 -0.62686491 -0.77856107 174.29887667  
Axis -0.99878786 -0.04921762 0.00065948  
Axis point 0.00000000 102.89826098 61.82007127  
Rotation angle (degrees) 141.12908780  
Shift along axis -235.34560676  
  
Average map value = 0.5299 for 10778 atoms, 7662 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.203, overlap = 208.1  
steps = 56, shift = 3.29, angle = 0.00633 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99569103 0.08701865 -0.03204669 228.08434832  
0.08783500 -0.77418517 0.62683509 155.40250313  
0.02973635 -0.62694895 -0.77849262 174.30081973  
Axis -0.99878787 -0.04921753 0.00065032  
Axis point 0.00000000 102.90241320 61.81600426  
Rotation angle (degrees) 141.12283690  
Shift along axis -235.34305717  
  
Average map value = 0.5298 for 10778 atoms, 7662 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4553, correlation about mean = 0.203, overlap = 208.1  
steps = 44, shift = 0.00811, angle = 0.0352 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99573897 0.08664429 -0.03156791 228.07014252  
0.08724107 -0.77418807 0.62691446 155.37990545  
0.02987914 -0.62699722 -0.77844828 174.30697244  
Axis -0.99880134 -0.04894555 0.00047537  
Axis point 0.00000000 102.91948408 61.78903594  
Rotation angle (degrees) 141.11875700  
Shift along axis -235.31905799  
  
Average map value = 0.5298 for 10778 atoms, 7664 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208  
steps = 64, shift = 0.0701, angle = 0.0525 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99568058 0.08724699 -0.03174922 228.14340683  
0.08784385 -0.77455230 0.62638015 155.40601831  
0.03005843 -0.62646357 -0.77887091 174.29089622  
Axis -0.99878519 -0.04927395 0.00047583  
Axis point 0.00000000 102.85777199 61.81802086  
Rotation angle (degrees) 141.15734961  
Shift along axis -235.44079179  
  
Average map value = 0.5298 for 10778 atoms, 7667 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208  
steps = 60, shift = 0.0121, angle = 0.0119 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99567091 0.08728381 -0.03195067 228.13673456  
0.08799763 -0.77451569 0.62640384 155.41787664  
0.02992870 -0.62650371 -0.77884362 174.28587829  
Axis -0.99878245 -0.04932848 0.00056904  
Axis point 0.00000000 102.86281589 61.82438342  
Rotation angle (degrees) 141.15487246  
Shift along axis -235.42631824  
  
Average map value = 0.5299 for 10778 atoms, 7667 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.203, overlap = 208.1  
steps = 48, shift = 0.065, angle = 0.0318 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99569473 0.08700387 -0.03197182 228.08347302  
0.08777865 -0.77423422 0.62678240 155.39620508  
0.02977889 -0.62689042 -0.77853813 174.30701018  
Axis -0.99878894 -0.04919620 0.00061725  
Axis point 0.00000000 102.89785927 61.81852030  
Rotation angle (degrees) 141.12698412  
Shift along axis -235.34456148  
  
Average map value = 0.5298 for 10778 atoms, 7662 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4553, correlation about mean = 0.203, overlap = 208.1  
steps = 48, shift = 0.0071, angle = 0.0216 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99572148 0.08675427 -0.03181662 228.07262057  
0.08748007 -0.77411309 0.62697374 155.38629729  
0.02976306 -0.62707458 -0.77839041 174.30407124  
Axis -0.99879637 -0.04904561 0.00057807  
Axis point 0.00000000 102.91958954 61.79849085  
Rotation angle (degrees) 141.11349254  
Shift along axis -235.31836162  
  
Average map value = 0.5298 for 10778 atoms, 7663 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4553, correlation about mean = 0.203, overlap = 208.1  
steps = 44, shift = 0.00437, angle = 0.00786 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99572157 0.08677828 -0.03174840 228.07622286  
0.08745946 -0.77418834 0.62688369 155.38376073  
0.02982072 -0.62697835 -0.77846572 174.30742058  
Axis -0.99879645 -0.04904449 0.00054261  
Axis point 0.00000000 102.91159185 61.80145694  
Rotation angle (degrees) 141.12035987  
Shift along axis -235.32785708  
  
Average map value = 0.5298 for 10778 atoms, 7662 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4553, correlation about mean = 0.203, overlap = 208.1  
steps = 52, shift = 5.13, angle = 0.00862 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99573366 0.08668098 -0.03163481 228.07224430  
0.08731218 -0.77419443 0.62689670 155.38044433  
0.02984861 -0.62698429 -0.77845987 174.30742436  
Axis -0.99879985 -0.04897564 0.00050279  
Axis point 0.00000000 102.91661396 61.79427673  
Rotation angle (degrees) 141.11981896  
Shift along axis -235.32073970  
  
Average map value = 0.5298 for 10778 atoms, 7663 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4553, correlation about mean = 0.203, overlap = 208.1  
steps = 44, shift = 0.00427, angle = 0.0156 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99571177 0.08685964 -0.03183322 228.07690733  
0.08757703 -0.77420038 0.62685241 155.38595433  
0.02980296 -0.62695222 -0.77848744 174.30926088  
Axis -0.99879370 -0.04910002 0.00057148  
Axis point 0.00000000 102.90622305 61.80896267  
Rotation angle (degrees) 141.12234809  
Shift along axis -235.33161744  
  
Average map value = 0.5298 for 10778 atoms, 7661 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208  
steps = 108, shift = 25.6, angle = 0.0307 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99569589 0.08706222 -0.03177645 228.12698764  
0.08771391 -0.77449857 0.62646480 155.40336909  
0.02993068 -0.62655570 -0.77880171 174.28932583  
Axis -0.99878945 -0.04918709 0.00051946  
Axis point 0.00000000 102.87360651 61.81440258  
Rotation angle (degrees) 141.15103615  
Shift along axis -235.40413030  
  
Average map value = 0.5299 for 10778 atoms, 7667 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208.1  
steps = 76, shift = 0.285, angle = 0.0331 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99566675 0.08721466 -0.03226761 228.09305819  
0.08813258 -0.77429664 0.62665562 155.42472547  
0.02966893 -0.62678403 -0.77862798 174.29166105  
Axis -0.99878113 -0.04935303 0.00073143  
Axis point 0.00000000 102.88915684 61.83110218  
Rotation angle (degrees) 141.13521275  
Shift along axis -235.35824159  
  
Average map value = 0.5299 for 10778 atoms, 7661 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208.1  
steps = 48, shift = 0.0633, angle = 0.04 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99569182 0.08717161 -0.03160360 228.14198649  
0.08768924 -0.77446799 0.62650605 155.38535002  
0.03013764 -0.62657828 -0.77877556 174.30144058  
Axis -0.99878828 -0.04921172 0.00041258  
Axis point 0.00000000 102.86120392 61.81104823  
Rotation angle (degrees) 141.14863128  
Shift along axis -235.44040969  
  
Average map value = 0.5298 for 10778 atoms, 7668 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208.1  
steps = 60, shift = 0.0607, angle = 0.0344 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99569519 0.08695265 -0.03209668 228.08641694  
0.08781985 -0.77429025 0.62670741 155.40158502  
0.02964180 -0.62682833 -0.77859335 174.30399778  
Axis -0.99878911 -0.04919183 0.00069097  
Axis point 0.00000000 102.89916690 61.82778814  
Rotation angle (degrees) 141.13204190  
Shift along axis -235.33428015  
  
Average map value = 0.5299 for 10778 atoms, 7662 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208  
steps = 48, shift = 0.0572, angle = 0.0349 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99568129 0.08722533 -0.03178642 228.13580166  
0.08785111 -0.77456878 0.62635876 155.40468998  
0.03001366 -0.62644621 -0.77888659 174.29509494  
Axis -0.99878540 -0.04926946 0.00049889  
Axis point 0.00000000 102.85827144 61.82371311  
Rotation angle (degrees) 141.15878635  
Shift along axis -235.42845733  
  
Average map value = 0.5299 for 10778 atoms, 7666 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208  
steps = 40, shift = 0.00796, angle = 0.00829 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99567217 0.08728195 -0.03191663 228.13180296  
0.08797599 -0.77454150 0.62637496 155.41184028  
0.02995055 -0.62647205 -0.77886824 174.29310021  
Axis -0.99878282 -0.04932117 0.00055330  
Axis point 0.00000000 102.85944159 61.82852225  
Rotation angle (degrees) 141.15711866  
Shift along axis -235.42278143  
  
Average map value = 0.5299 for 10778 atoms, 7670 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208  
steps = 48, shift = 0.0342, angle = 0.0354 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99570700 0.08709424 -0.03133746 228.14928182  
0.08746387 -0.77452186 0.62647096 155.38182639  
0.03029054 -0.62652246 -0.77881454 174.30342007  
Axis -0.99879258 -0.04912523 0.00029464  
Axis point 0.00000000 102.86144196 61.79834299  
Rotation angle (degrees) 141.15217797  
Shift along axis -235.45562204  
  
Average map value = 0.5298 for 10778 atoms, 7667 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208  
steps = 44, shift = 0.021, angle = 0.0228 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99568367 0.08722866 -0.03170265 228.14433271  
0.08779969 -0.77454114 0.62640015 155.40446801  
0.03008512 -0.62647993 -0.77885672 174.29117601  
Axis -0.99878605 -0.04925672 0.00045522  
Axis point 0.00000000 102.85922661 61.81448573  
Rotation angle (degrees) 141.15605052  
Shift along axis -235.44274997  
  
Average map value = 0.5298 for 10778 atoms, 7667 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208  
steps = 48, shift = 0.00693, angle = 0.0204 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99568225 0.08726861 -0.03163929 228.14052001  
0.08778857 -0.77448878 0.62646649 155.40234459  
0.03016657 -0.62653914 -0.77880593 174.29228607  
Axis -0.99878560 -0.04926618 0.00041447  
Axis point 0.00000000 102.85967181 61.80790150  
Rotation angle (degrees) 141.15140510  
Shift along axis -235.44730616  
  
Average map value = 0.5298 for 10778 atoms, 7667 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208  
steps = 40, shift = 0.0254, angle = 0.0282 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99567498 0.08717534 -0.03212152 228.12130134  
0.08801722 -0.77445053 0.62648169 155.42331902  
0.02973721 -0.62659941 -0.77877396 174.27949620  
Axis -0.99878353 -0.04930525 0.00067103  
Axis point 0.00000000 102.87708512 61.82614146  
Rotation angle (degrees) 141.14853023  
Shift along axis -235.39003747  
  
Average map value = 0.5299 for 10778 atoms, 7669 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208  
steps = 48, shift = 0.0273, angle = 0.0291 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99564417 0.08754504 -0.03207096 228.15736927  
0.08828377 -0.77464327 0.62620583 155.42516991  
0.02997765 -0.62630954 -0.77899788 174.28647434  
Axis -0.99877501 -0.04947852 0.00058907  
Axis point 0.00000000 102.83786766 61.84203110  
Rotation angle (degrees) 141.16896986  
Shift along axis -235.46541940  
  
Average map value = 0.5299 for 10778 atoms, 7670 outside contour  

> scalebar 50

> scalebar off

> scalebar 50

> save /Users/francescappadoo/Desktop/image22.png supersample 3

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5316, steps = 100  
shifted from previous position = 17.7  
rotated from previous position = 1.99 degrees  
atoms outside contour = 7721, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99807885 0.05314340 -0.03184950 226.93730242  
0.06139509 -0.77929797 0.62363874 154.51303327  
0.00832202 -0.62439605 -0.78106358 173.55265380  
Axis -0.99946055 -0.03217045 0.00660818  
Axis point 0.00000000 104.30612563 61.73189123  
Rotation angle (degrees) 141.36519615  
Shift along axis -230.63876856  
  

> select add #13

10778 atoms, 11624 bonds, 336 residues, 1 model selected  

> view matrix models
> #13,-0.32421,-0.81016,0.4884,310.31,0.94187,-0.22835,0.24644,191.55,-0.088132,0.53991,0.8371,15.185

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5316, steps = 68  
shifted from previous position = 6.11  
rotated from previous position = 0.0426 degrees  
atoms outside contour = 7720, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99809759 0.05307249 -0.03137708 226.88362940  
0.06103979 -0.77896048 0.62409508 154.48777433  
0.00868076 -0.62482306 -0.78071813 173.56445368  
Axis -0.99946571 -0.03205689 0.00637595  
Axis point 0.00000000 104.32737056 61.68783936  
Rotation angle (degrees) 141.33301170  
Shift along axis -230.60816662  
  

> ui mousemode right "rotate selected models"

> view matrix models
> #13,-0.10358,-0.7087,0.69787,318.24,0.92886,-0.31982,-0.18691,196.27,0.35566,0.62886,0.69141,25.615

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5316, steps = 116  
shifted from previous position = 1.56  
rotated from previous position = 29.7 degrees  
atoms outside contour = 7721, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99808315 0.05311880 -0.03175564 226.92863099  
0.06131655 -0.77924870 0.62370803 154.50893480  
0.00838506 -0.62445963 -0.78101207 173.55414417  
Axis -0.99946174 -0.03214240 0.00656430  
Axis point 0.00000000 104.30998660 61.72373375  
Rotation angle (degrees) 141.36037523  
Shift along axis -230.63351180  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5316, steps = 64  
shifted from previous position = 0.0452  
rotated from previous position = 0.00758 degrees  
atoms outside contour = 7720, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99808962 0.05305819 -0.03165346 226.88597642  
0.06120493 -0.77921842 0.62375682 154.49712301  
0.00843043 -0.62450256 -0.78097725 173.57348426  
Axis -0.99946355 -0.03209461 0.00652297  
Axis point 0.00000000 104.31463129 61.72614788  
Rotation angle (degrees) 141.35709199  
Shift along axis -230.59057266  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5316, steps = 48  
shifted from previous position = 0.0222  
rotated from previous position = 0.0391 degrees  
atoms outside contour = 7718, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99810495 0.05296288 -0.03132794 226.86270065  
0.06092208 -0.77886307 0.62422814 154.48172653  
0.00866073 -0.62495377 -0.78061371 173.56232726  
Axis -0.99946775 -0.03199485 0.00636814  
Axis point 0.00000000 104.33917735 61.67734433  
Rotation angle (degrees) 141.32342112  
Shift along axis -230.57930287  
  

> view matrix models
> #13,-0.24727,-0.7953,0.5535,313.64,0.96855,-0.18646,0.16477,197.34,-0.027831,0.57683,0.81639,12.967

> ui mousemode right "translate selected models"

> view matrix models
> #13,-0.24727,-0.7953,0.5535,309.39,0.96855,-0.18646,0.16477,192.9,-0.027831,0.57683,0.81639,17.932

> view matrix models
> #13,-0.24727,-0.7953,0.5535,309.08,0.96855,-0.18646,0.16477,192.77,-0.027831,0.57683,0.81639,17.543

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208  
steps = 72, shift = 8.25, angle = 6.03 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99567742 0.08726150 -0.03181045 228.13536283  
0.08789336 -0.77454424 0.62638322 155.40700578  
0.03002052 -0.62647157 -0.77886593 174.29447135  
Axis -0.99878428 -0.04929207 0.00050373  
Axis point 0.00000000 102.85859325 61.82314149  
Rotation angle (degrees) 141.15689954  
Shift along axis -235.43054968  
  
Average map value = 0.5299 for 10778 atoms, 7667 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4553, correlation about mean = 0.203, overlap = 208.1  
steps = 76, shift = 13.8, angle = 0.0412 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99570414 0.08691606 -0.03191964 228.07759384  
0.08767427 -0.77417301 0.62687266 155.39214125  
0.02977397 -0.62697825 -0.77846759 174.30493603  
Axis -0.99879153 -0.04914384 0.00060397  
Axis point 0.00000000 102.90648610 61.80992191  
Rotation angle (degrees) 141.12054191  
Shift along axis -235.33325950  
  
Average map value = 0.5298 for 10778 atoms, 7662 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4553, correlation about mean = 0.203, overlap = 208.1  
steps = 48, shift = 0.00726, angle = 0.0197 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99573213 0.08667509 -0.03170087 228.06804029  
0.08734625 -0.77413267 0.62696826 155.37977757  
0.02980184 -0.62706140 -0.77839954 174.30795889  
Axis -0.99879936 -0.04898518 0.00053456  
Axis point 0.00000000 102.92143639 61.79471214  
Rotation angle (degrees) 141.11431777  
Shift along axis -235.31234026  
  
Average map value = 0.5298 for 10778 atoms, 7664 outside contour  

> scalebar off

> scalebar 50

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208  
steps = 80, shift = 14.9, angle = 0.0529 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99567780 0.08724860 -0.03183388 228.13367643  
0.08789739 -0.77453109 0.62639892 155.40815959  
0.02999609 -0.62648962 -0.77885235 174.29341856  
Axis -0.99878438 -0.04928994 0.00051720  
Axis point 0.00000000 102.86088674 61.82295166  
Rotation angle (degrees) 141.15566090  
Shift along axis -235.42626670  
  
Average map value = 0.5299 for 10778 atoms, 7667 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208.1  
steps = 44, shift = 0.055, angle = 0.0339 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99568820 0.08699283 -0.03220646 228.08478497  
0.08792034 -0.77428931 0.62669453 155.40879278  
0.02958080 -0.62682396 -0.77859919 174.29935037  
Axis -0.99878713 -0.04923128 0.00073903  
Axis point 0.00000000 102.89906732 61.83161784  
Rotation angle (degrees) 141.13258551  
Shift along axis -235.33030967  
  
Average map value = 0.5299 for 10778 atoms, 7661 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208  
steps = 28, shift = 0.0546, angle = 0.0272 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99569191 0.08708893 -0.03182980 228.12491798  
0.08776724 -0.77447440 0.62648725 155.41127386  
0.02990872 -0.62658192 -0.77878146 174.28453835  
Axis -0.99878830 -0.04921015 0.00054066  
Axis point 0.00000000 102.87662277 61.81264078  
Rotation angle (degrees) 141.14918987  
Shift along axis -235.40208168  
  
Average map value = 0.5299 for 10778 atoms, 7667 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208.1  
steps = 48, shift = 0.0469, angle = 0.0264 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99569405 0.08701321 -0.03196955 228.09456186  
0.08778297 -0.77420113 0.62682271 155.40022234  
0.02979098 -0.62693004 -0.77850576 174.29785552  
Axis -0.99878872 -0.04920087 0.00061322  
Axis point 0.00000000 102.89981708 61.81098600  
Rotation angle (degrees) 141.12402789  
Shift along axis -235.35721711  
  
Average map value = 0.5298 for 10778 atoms, 7663 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208.1  
steps = 44, shift = 0.00282, angle = 0.00349 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99569275 0.08703335 -0.03195543 228.09699830  
0.08779146 -0.77423544 0.62677914 155.40044464  
0.02980965 -0.62688487 -0.77854141 174.29845341  
Axis -0.99878837 -0.04920796 0.00060398  
Axis point 0.00000000 102.89600114 61.81282031  
Rotation angle (degrees) 141.12728151  
Shift along axis -235.36229497  
  
Average map value = 0.5298 for 10778 atoms, 7663 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208.1  
steps = 60, shift = 0.00223, angle = 0.00194 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99569145 0.08703915 -0.03198010 228.09842865  
0.08781211 -0.77424780 0.62676099 155.40211590  
0.02979221 -0.62686881 -0.77855502 174.29722222  
Axis -0.99878802 -0.04921504 0.00061583  
Axis point 0.00000000 102.89521042 61.81443142  
Rotation angle (degrees) 141.12852576  
Shift along axis -235.36276127  
  
Average map value = 0.5298 for 10778 atoms, 7663 outside contour  

> scalebar off

> scalebar 50

> select subtract #13

Nothing selected  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208  
steps = 84, shift = 16.8, angle = 0.0289 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99568149 0.08723152 -0.03176523 228.14005007  
0.08783962 -0.77450563 0.62643849 155.40628737  
0.03004282 -0.62652347 -0.77882332 174.29095795  
Axis -0.99878540 -0.04926964 0.00048474  
Axis point 0.00000000 102.86258059 61.81572986  
Rotation angle (degrees) 141.15300407  
Shift along axis -235.43527538  
  
Average map value = 0.5298 for 10778 atoms, 7666 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.203, overlap = 208.1  
steps = 60, shift = 1.9, angle = 0.0333 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99570739 0.08690772 -0.03184079 228.08572887  
0.08762056 -0.77422461 0.62681644 155.39210630  
0.02982325 -0.62691568 -0.77851609 174.30363601  
Axis -0.99879248 -0.04912499 0.00056789  
Axis point 0.00000000 102.90287945 61.80762602  
Rotation angle (degrees) 141.12496249  
Shift along axis -235.34496087  
  
Average map value = 0.5298 for 10778 atoms, 7663 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208  
steps = 48, shift = 0.069, angle = 0.0392 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99567977 0.08726980 -0.03171399 228.14760262  
0.08784000 -0.77456129 0.62636962 155.40768129  
0.03009871 -0.62644933 -0.77888080 174.28880143  
Axis -0.99878495 -0.04927894 0.00045458  
Axis point 0.00000000 102.85591228 61.81516720  
Rotation angle (degrees) 141.15825046  
Shift along axis -235.44949067  
  
Average map value = 0.5298 for 10778 atoms, 7668 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208  
steps = 44, shift = 0.0233, angle = 0.0326 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99566390 0.08724625 -0.03227220 228.13397706  
0.08816832 -0.77446818 0.62643862 155.43167350  
0.02966062 -0.62656771 -0.77880238 174.26741666  
Axis -0.99878043 -0.04936709 0.00073499  
Axis point 0.00000000 102.87225487 61.83036469  
Rotation angle (degrees) 141.15114075  
Shift along axis -235.40087750  
  
Average map value = 0.5299 for 10778 atoms, 7671 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4553, correlation about mean = 0.203, overlap = 208.1  
steps = 48, shift = 0.0795, angle = 0.0452 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99571208 0.08683608 -0.03188967 228.07299228  
0.08759275 -0.77417009 0.62688766 155.38643968  
0.02974842 -0.62699293 -0.77845674 174.30724325  
Axis -0.99879376 -0.04909857 0.00060273  
Axis point 0.00000000 102.91006457 61.80931682  
Rotation angle (degrees) 141.11955113  
Shift along axis -235.32207251  
  
Average map value = 0.5298 for 10778 atoms, 7663 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208.1  
steps = 48, shift = 0.0804, angle = 0.0419 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99571013 0.08702954 -0.03141966 228.14663013  
0.08746453 -0.77451173 0.62648343 155.37357983  
0.03018766 -0.62654402 -0.77880119 174.30415763  
Axis -0.99879344 -0.04910745 0.00034673  
Axis point 0.00000000 102.86272705 61.80441393  
Rotation angle (degrees) 141.15096397  
Shift along axis -235.44092226  
  
Average map value = 0.5298 for 10778 atoms, 7666 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208.1  
steps = 56, shift = 0.0444, angle = 0.0252 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99568903 0.08712791 -0.03181312 228.11520406  
0.08778262 -0.77437803 0.62660420 155.38547827  
0.02995933 -0.62669559 -0.77868805 174.31252089  
Axis -0.99878743 -0.04922808 0.00052175  
Axis point 0.00000000 102.87340532 61.82367428  
Rotation angle (degrees) 141.14065513  
Shift along axis -235.39697799  
  
Average map value = 0.5298 for 10778 atoms, 7669 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208  
steps = 60, shift = 0.0424, angle = 0.0193 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99567719 0.08727749 -0.03177358 228.13803798  
0.08788328 -0.77455685 0.62636904 155.40625675  
0.03005745 -0.62645375 -0.77887884 174.29455393  
Axis -0.99878423 -0.04929338 0.00048296  
Axis point 0.00000000 102.85614943 61.82188290  
Rotation angle (degrees) 141.15807520  
Shift along axis -235.43699602  
  
Average map value = 0.5298 for 10778 atoms, 7666 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.203, overlap = 208.1  
steps = 44, shift = 0.0637, angle = 0.0357 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99568646 0.08705179 -0.03210077 228.07936664  
0.08789822 -0.77425350 0.62674188 155.41108371  
0.02970485 -0.62686001 -0.77856544 174.29944552  
Axis -0.99878662 -0.04924261 0.00067438  
Axis point 0.00000000 102.89904963 61.82221389  
Rotation angle (degrees) 141.12948917  
Shift along axis -235.33792300  
  
Average map value = 0.5299 for 10778 atoms, 7664 outside contour  

> scalebar off

> scalebar 50

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208  
steps = 44, shift = 0.0537, angle = 0.0284 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99568248 0.08719145 -0.03184418 228.12705364  
0.08785812 -0.77450899 0.62643175 155.40751933  
0.02995588 -0.62652490 -0.77882552 174.29341702  
Axis -0.99878568 -0.04926349 0.00053143  
Axis point 0.00000000 102.86640565 61.82177849  
Rotation angle (degrees) 141.15321289  
Shift along axis -235.41332552  
  
Average map value = 0.5299 for 10778 atoms, 7669 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208.1  
steps = 44, shift = 0.0393, angle = 0.0245 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99566149 0.08732232 -0.03214055 228.11145140  
0.08813746 -0.77431003 0.62663843 155.40350642  
0.02983276 -0.62675255 -0.77864706 174.30718705  
Axis -0.99877965 -0.04938418 0.00064955  
Axis point 0.00000000 102.87243906 61.83605869  
Rotation angle (degrees) 141.13693664  
Shift along axis -235.39432750  
  
Average map value = 0.5298 for 10778 atoms, 7665 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4553, correlation about mean = 0.2031, overlap = 208.1  
steps = 60, shift = 1.23, angle = 0.0317 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99570888 0.08688497 -0.03185640 228.08278282  
0.08761352 -0.77424390 0.62679359 155.38755730  
0.02979430 -0.62689501 -0.77853384 174.30619641  
Axis -0.99879291 -0.04911609 0.00058043  
Axis point 0.00000000 102.90126488 61.81187064  
Rotation angle (degrees) 141.12658534  
Shift along axis -235.33832322  
  
Average map value = 0.5298 for 10778 atoms, 7662 outside contour  

> select add #13

10778 atoms, 11624 bonds, 336 residues, 1 model selected  

> view matrix models
> #13,-0.37281,-0.66202,-0.65019,319.16,0.73256,0.22009,-0.64414,208.72,0.56953,-0.71644,0.40292,-22.924

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208.1  
steps = 64, shift = 2.16, angle = 0.00861 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99569655 0.08698640 -0.03196468 228.09146542  
0.08775975 -0.77421812 0.62680498 155.39905096  
0.02977586 -0.62691278 -0.77852024 174.29950844  
Axis -0.99878943 -0.04918635 0.00061610  
Axis point 0.00000000 102.90022530 61.81264639  
Rotation angle (degrees) 141.12535053  
Shift along axis -235.35146991  
  
Average map value = 0.5298 for 10778 atoms, 7662 outside contour  

> view matrix models
> #13,-0.37281,-0.66208,-0.65013,319.57,0.73247,0.22015,-0.64422,208.7,0.56965,-0.71637,0.40288,-21.717

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5316, steps = 68  
shifted from previous position = 0.756  
rotated from previous position = 1.97 degrees  
atoms outside contour = 7721, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99808751 0.05307947 -0.03168414 226.92632269  
0.06124078 -0.77922258 0.62374810 154.50838201  
0.00841921 -0.62449557 -0.78098297 173.55276149  
Axis -0.99946296 -0.03211057 0.00653472  
Axis point 0.00000000 104.31423322 61.71653570  
Rotation angle (degrees) 141.35764144  
Shift along axis -230.63168666  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5316, steps = 44  
shifted from previous position = 0.0453  
rotated from previous position = 0.0216 degrees  
atoms outside contour = 7720, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99808968 0.05314263 -0.03150936 226.88182052  
0.06117813 -0.77902048 0.62400664 154.50961184  
0.00861490 -0.62474229 -0.78078349 173.55448169  
Axis -0.99946351 -0.03211433 0.00643139  
Axis point 0.00000000 104.32710531 61.69197086  
Rotation angle (degrees) 141.33912238  
Shift along axis -230.60587700  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5316, steps = 80  
shifted from previous position = 0.0222  
rotated from previous position = 0.0204 degrees  
atoms outside contour = 7719, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99810373 0.05304088 -0.03123468 226.87950831  
0.06092532 -0.77890843 0.62417122 154.48733828  
0.00877762 -0.62489062 -0.78066296 173.56506730  
Axis -0.99946742 -0.03201682 0.00630893  
Axis point 0.00000000 104.33357694 61.67528442  
Rotation angle (degrees) 141.32781438  
Shift along axis -230.60986037  
  

> view matrix models
> #13,-0.39484,-0.64673,-0.65257,318.81,0.73992,0.19721,-0.64314,207.58,0.54463,-0.73679,0.40066,-23.225

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5316, steps = 72  
shifted from previous position = 1.59  
rotated from previous position = 0.0397 degrees  
atoms outside contour = 7720, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99806638 0.05341418 -0.03178724 226.93846768  
0.06156364 -0.77899120 0.62400528 154.51861376  
0.00856874 -0.62475564 -0.78077331 173.53879706  
Axis -0.99945696 -0.03229927 0.00652249  
Axis point 0.00000000 104.31152546 61.70024692  
Rotation angle (degrees) 141.33838198  
Shift along axis -230.67416386  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5316, steps = 60  
shifted from previous position = 0.00948  
rotated from previous position = 0.0237 degrees  
atoms outside contour = 7721, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99807600 0.05320160 -0.03184147 226.93548919  
0.06143449 -0.77921743 0.62373548 154.51782658  
0.00837228 -0.62449160 -0.78098665 173.55015365  
Axis -0.99945973 -0.03219929 0.00659210  
Axis point 0.00000000 104.31030534 61.72402988  
Rotation angle (degrees) 141.35810219  
Shift along axis -230.64418762  
  

> view matrix models
> #13,-0.39516,-0.64645,-0.65265,317.77,0.73948,0.19765,-0.64351,207.16,0.54499,-0.73691,0.39994,-24.312

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5316, steps = 88  
shifted from previous position = 3.11  
rotated from previous position = 0.0512 degrees  
atoms outside contour = 7718, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99811051 0.05296718 -0.03114307 226.86566273  
0.06081083 -0.77893467 0.62414964 154.47464102  
0.00880101 -0.62486416 -0.78068388 173.57037302  
Axis -0.99946933 -0.03196353 0.00627654  
Axis point 0.00000000 104.33146015 61.67557992  
Rotation angle (degrees) 141.32966578  
Shift along axis -230.59340476  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5316, steps = 60  
shifted from previous position = 0.0589  
rotated from previous position = 0.02 degrees  
atoms outside contour = 7720, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99809204 0.05314618 -0.03142866 226.92506609  
0.06112979 -0.77897317 0.62407043 154.50058930  
0.00868486 -0.62480097 -0.78073575 173.54464248  
Axis -0.99946416 -0.03210260 0.00638924  
Axis point 0.00000000 104.32366727 61.68058321  
Rotation angle (degrees) 141.33465630  
Shift along axis -230.65452346  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5316, steps = 44  
shifted from previous position = 0.0421  
rotated from previous position = 0.00722 degrees  
atoms outside contour = 7720, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99808925 0.05314132 -0.03152526 226.88913302  
0.06118705 -0.77902056 0.62400566 154.49328573  
0.00860164 -0.62474229 -0.78078363 173.56389430  
Axis -0.99946339 -0.03211647 0.00643958  
Axis point 0.00000000 104.32054916 61.70063237  
Rotation angle (degrees) 141.33915254  
Shift along axis -230.61148172  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5316, steps = 48  
shifted from previous position = 0.01  
rotated from previous position = 0.0117 degrees  
atoms outside contour = 7719, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99809319 0.05313892 -0.03140430 226.87953353  
0.06110817 -0.77892148 0.62413706 154.48967257  
0.00870447 -0.62486603 -0.78068347 173.56581359  
Axis -0.99946446 -0.03209543 0.00637707  
Axis point 0.00000000 104.32705631 61.68754621  
Rotation angle (degrees) 141.32983583  
Shift along axis -230.60960236  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5316, steps = 60  
shifted from previous position = 0.0514  
rotated from previous position = 0.00444 degrees  
atoms outside contour = 7719, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99809102 0.05316777 -0.03142441 226.92508324  
0.06114385 -0.77896275 0.62408206 154.50191727  
0.00870259 -0.62481212 -0.78072663 173.54507401  
Axis -0.99946387 -0.03211280 0.00638310  
Axis point 0.00000000 104.32374083 61.67967658  
Rotation angle (degrees) 141.33380686  
Shift along axis -230.65715518  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2768_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5316, steps = 44  
shifted from previous position = 0.0444  
rotated from previous position = 0.00252 degrees  
atoms outside contour = 7719, contour level = 0.41421  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99809113 0.05314789 -0.03145469 226.88634935  
0.06114704 -0.77894693 0.62410150 154.49314949  
0.00866813 -0.62483354 -0.78070987 173.56358592  
Axis -0.99946389 -0.03210840 0.00640135  
Axis point 0.00000000 104.32570361 61.69091857  
Rotation angle (degrees) 141.33230777  
Shift along axis -230.61420157  
  

> select subtract #13

Nothing selected  

> movie record

> turn y 2 180

> wait 180

> movie encode /Users/francescappadoo/Desktop/movie8.mp4

Movie saved to /Users/francescappadoo/Desktop/movie8.mp4  
  

> scalebar off

> scalebar 50

> movie record

> turn y 2 180

> wait 180

> movie encode /Users/francescappadoo/Desktop/movie9.mp4

Movie saved to /Users/francescappadoo/Desktop/movie9.mp4  
  

> color zone #10 near #13 distance 17.8

[Repeated 1 time(s)]

> undo

[Repeated 1 time(s)]

> select #13:63-68

189 atoms, 203 bonds, 6 residues, 1 model selected  

> color zone #10 near sel & #13 distance 17.8

> save /Users/francescappadoo/Desktop/image23.png supersample 3

> select add #13

10778 atoms, 11624 bonds, 336 residues, 1 model selected  

> select subtract #13

Nothing selected  

> hide #13 models

> hide #!10 models

> show #!3 models

> select #13:63-68

189 atoms, 203 bonds, 6 residues, 1 model selected  

> tile

2 models tiled  

> scalebar off

> scalebar 50

> save /Users/francescappadoo/Desktop/image24.png supersample 3

> select add #3

189 atoms, 203 bonds, 6 residues, 3 models selected  

> ui mousemode right "rotate selected models"

> view matrix models
> #3,-0.56057,-0.80442,-0.19663,578.32,0.819,-0.50344,-0.27528,141.4,0.12244,-0.31536,0.94104,-110.41,#13,-0.80071,0.52163,-0.29457,319.82,0.59886,0.70956,-0.37133,197.57,0.015322,-0.47374,-0.88053,103.52

> movie record

> turn y 2 180

> wait 180

> movie encode /Users/francescappadoo/Desktop/movie10.mp4

Movie saved to /Users/francescappadoo/Desktop/movie10.mp4  
  

> select subtract #3

189 atoms, 203 bonds, 6 residues, 1 model selected  

> movie record

> turn y 2 180

> wait 180

> movie encode /Users/francescappadoo/Desktop/movie11.mp4

Movie saved to /Users/francescappadoo/Desktop/movie11.mp4  
  

> hide #!3 models

> show #13 models

> show #!10 models

> scalebar off

> scalebar 50

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.0005328, correlation about mean = 0.1663, overlap = 0.001634  
steps = 444, shift = 82.5, angle = 34.2 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.82241635 -0.42277162 -0.38065139 218.98359820  
-0.54572666 -0.77527728 -0.31800556 339.97441475  
-0.16066669 0.46926457 -0.86831848 203.08092798  
Axis 0.95239329 -0.26612460 -0.14874380  
Axis point 0.00000000 176.03381719 159.90762334  
Rotation angle (degrees) 155.58697339  
Shift along axis 87.87592397  
  
Average map value = 0.0007994 for 4505 atoms, 10778 outside contour  

> tile

3 models tiled  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0, correlation about mean = 0, overlap = 0  
steps = 36, shift = 7.38, angle = 4.04 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.81601249 -0.41696168 -0.40033304 240.74576082  
-0.56071851 -0.73924084 -0.37298487 50.25426442  
-0.14042218 0.52883445 -0.83702792 10.50519017  
Axis 0.94981103 -0.27374242 -0.15140707  
Axis point 0.00000000 54.13003826 38.88265673  
Rotation angle (degrees) 151.65782531  
Shift along axis 213.31569391  
  
Average map value = 0 for 2918 atoms, 10778 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208  
steps = 48, shift = 0.00682, angle = 0.015 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99568093 0.08729982 -0.03159396 228.14106749  
0.08778112 -0.77442046 0.62655198 155.40233163  
0.03023086 -0.62661926 -0.77873896 174.29015706  
Axis -0.99878519 -0.04927476 0.00038360  
Axis point 0.00000000 102.86226439 61.79940038  
Rotation angle (degrees) 141.14528690  
Shift along axis -235.45447350  
  
Average map value = 0.5298 for 10778 atoms, 7667 outside contour  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2768_004_volume_map.mrc using 2552 points  
correlation = 0.4552, correlation about mean = 0.2031, overlap = 208  
steps = 36, shift = 0.0265, angle = 0.0239 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2768_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99570207 0.08696973 -0.03183695 228.10989924  
0.08767857 -0.77447649 0.62649708 155.39971989  
0.02982930 -0.62659591 -0.77877324 174.29409621  
Axis -0.99879116 -0.04915175 0.00056499  
Axis point 0.00000000 102.88114581 61.81910769  
Rotation angle (degrees) 141.14844529  
Shift along axis -235.37384534  
  
Average map value = 0.5299 for 10778 atoms, 7668 outside contour  

> undo

[Repeated 9 time(s)]

> show #!10 models

> hide #!10 models

> show #!10 models

> hide #!3 models

Color zone shortcut requires 1 displayed atomic model and 1 map, got 0 atomic
models, 1 maps.  

[Repeated 1 time(s)]

> show #13 models

> select add #13

10778 atoms, 11624 bonds, 336 residues, 1 model selected  

> select subtract #13

Nothing selected  

> color zone #10 near #13 distance 17.8

[Repeated 1 time(s)]

> undo

[Repeated 5 time(s)]

> show #13 models

> close #10

> hide #!3 models

> open
> /Users/francescappadoo/Downloads/rnacomposer-2024-07-03-103043/Kendall_Fran_SHAPE_MaP_fit_h3.pdb

Chain information for Kendall_Fran_SHAPE_MaP_fit_h3.pdb #10  
---  
Chain | Description  
A | No description available  
  

> tile

3 models tiled  

> close #10

> tile

2 models tiled  

> select #13:79-81

101 atoms, 109 bonds, 3 residues, 1 model selected  

> select #13:77-79

97 atoms, 104 bonds, 3 residues, 1 model selected  

> color sel red

> select up

10778 atoms, 11624 bonds, 336 residues, 1 model selected  

> select up

40785 atoms, 43984 bonds, 1272 residues, 28 models selected  

> select up

40785 atoms, 43984 bonds, 1272 residues, 28 models selected  

> select down

10778 atoms, 11624 bonds, 336 residues, 1 model selected  

> select down

97 atoms, 104 bonds, 3 residues, 1 model selected  

> open /Users/francescappadoo/Downloads/cryosparc_P12_J2768_004_volume_map.mrc

Opened cryosparc_P12_J2768_004_volume_map.mrc as #10, grid size 128,128,128,
pixel 2.96, shown at level 0.0253, step 1, values float32  

> select #13:79-81

101 atoms, 109 bonds, 3 residues, 1 model selected  

> tile

3 models tiled  

> surface dust #10 size 29.6

> close #10

> tile

2 models tiled  

> open /Users/francescappadoo/Downloads/cryosparc_P12_J2769_004_volume_map.mrc

Opened cryosparc_P12_J2769_004_volume_map.mrc as #10, grid size 128,128,128,
pixel 2.96, shown at level 0.0593, step 1, values float32  

> tile

3 models tiled  

> surface dust #10 size 29.6

> volume #10 level 0.5111

> tile

3 models tiled  

> volume #10 level 0.3981

> surface dust #10 size 29.6

> transparency #10.1 50

> color #10 #fffb00ff models

> color #10 #fffc79ff models

> color #10 #ffd479ff models

> color #10 #fffc79ff models

> color #10 #fffb00ff models

> color #10 #fdfe9cff models

> transparency #10.1 50

> tile

3 models tiled  

> fitmap #13 inMap

Missing "inMap" keyword's argument  

> fitmap #13 inMap #10 resolution 15 search 200

Found 109 unique fits from 200 random placements having fraction of points
inside contour >= 0.100 (199 of 200).  
  
Correlations and times found:  
0.491 (5), 0.4793 (4), 0.4761 (5), 0.4757 (5), 0.4672 (3), 0.4668 (5), 0.4652
(10), 0.4641 (5), 0.4635 (3), 0.463 (2), 0.462 (5), 0.4592 (1), 0.4579 (3),
0.4542 (2), 0.4521 (1), 0.4505 (2), 0.4505 (2), 0.4499 (6), 0.4491 (4), 0.4484
(2), 0.4458 (1), 0.4438 (2), 0.4415 (5), 0.4406 (3), 0.4395 (1), 0.4394 (3),
0.439 (1), 0.4388 (1), 0.4385 (2), 0.4381 (2), 0.4374 (2), 0.436 (1), 0.4348
(1), 0.4335 (1), 0.4333 (2), 0.4329 (1), 0.432 (1), 0.4289 (1), 0.4271 (1),
0.4264 (2), 0.4254 (1), 0.4246 (1), 0.4243 (2), 0.4238 (3), 0.4233 (1), 0.4227
(3), 0.4226 (2), 0.4221 (3), 0.4218 (1), 0.4216 (1), 0.4216 (1), 0.4199 (1),
0.4188 (1), 0.4173 (1), 0.4142 (1), 0.4136 (2), 0.4135 (2), 0.413 (1), 0.4124
(1), 0.4122 (1), 0.4122 (1), 0.4119 (1), 0.4118 (1), 0.4109 (1), 0.4108 (1),
0.4096 (1), 0.4083 (1), 0.4066 (3), 0.4052 (1), 0.4043 (2), 0.4031 (3), 0.4029
(1), 0.4018 (1), 0.4009 (1), 0.3989 (1), 0.3979 (1), 0.3975 (1), 0.3967 (1),
0.3965 (1), 0.3946 (1), 0.3945 (1), 0.3915 (2), 0.391 (1), 0.3905 (1), 0.3901
(1), 0.3889 (1), 0.3869 (1), 0.3859 (1), 0.3841 (1), 0.383 (1), 0.3824 (3),
0.3824 (1), 0.3794 (1), 0.3759 (1), 0.3755 (3), 0.3745 (1), 0.3744 (1), 0.3703
(1), 0.3677 (2), 0.3676 (1), 0.3625 (1), 0.3588 (1), 0.3584 (1), 0.3558 (1),
0.3534 (1), 0.3454 (1), 0.3287 (1), 0.3284 (1), 0.3129 (1)  
  
Best fit found:  
Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.491, correlation about mean = 0.2303, overlap = 225.2  
steps = 160, shift = 26.4, angle = 32.7 degrees  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.42771306 0.04102041 0.90298321 186.23525627  
0.67763140 -0.67568866 -0.29027644 174.41118311  
0.59822835 0.73604485 -0.31679759 231.81335998  
Axis 0.82396662 0.24466787 0.51109357  
Axis point 0.00000000 44.49638620 78.80728730  
Rotation angle (degrees) 141.47961564  
Shift along axis 314.60276527  
  
Found 109 fits.  

> fitmap #13 inMap #10 resolution 15

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4592, correlation about mean = 0.2024, overlap = 206.3  
steps = 96, shift = 23.1, angle = 0.00486 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99904479 0.04316920 -0.00676603 226.04598368  
0.03809490 -0.78462571 0.61879818 152.96613221  
0.02140427 -0.61846493 -0.78552078 174.07441971  
Axis -0.99973250 -0.02276214 -0.00410014  
Axis point 0.00000000 103.91767221 60.96888229  
Rotation angle (degrees) 141.77165500  
Shift along axis -230.18108263  
  
Average map value = 0.521 for 10778 atoms, 7681 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4591, correlation about mean = 0.2019, overlap = 206.3  
steps = 48, shift = 0.404, angle = 0.577 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99934290 0.03624081 0.00048697 225.67300367  
0.02814780 -0.78450087 0.61948849 152.29686433  
0.02283283 -0.61906779 -0.78500550 174.12614665  
Axis -0.99981595 -0.01803854 -0.00653302  
Axis point 0.00000000 104.06738991 60.61714618  
Rotation angle (degrees) 141.72824009  
Shift along axis -229.51625138  
  
Average map value = 0.5204 for 10778 atoms, 7671 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4591, correlation about mean = 0.202, overlap = 206.3  
steps = 44, shift = 0.0647, angle = 0.0461 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99934148 0.03628114 0.00037245 225.73545521  
0.02823227 -0.78400498 0.62011212 152.30195039  
0.02279042 -0.61969332 -0.78451303 174.07296819  
Axis -0.99981550 -0.01807851 -0.00649085  
Axis point 0.00000000 104.09575962 60.56294645  
Rotation angle (degrees) 141.68261498  
Shift along axis -229.57708135  
  
Average map value = 0.5204 for 10778 atoms, 7672 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4591, correlation about mean = 0.2019, overlap = 206.3  
steps = 36, shift = 0.0494, angle = 0.0452 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99933944 0.03633389 0.00062371 225.68837182  
0.02813510 -0.78447092 0.61952700 152.29294338  
0.02299915 -0.61910029 -0.78497502 174.12319939  
Axis -0.99981498 -0.01806137 -0.00661803  
Axis point 0.00000000 104.06103033 60.60578687  
Rotation angle (degrees) 141.72560500  
Shift along axis -229.54958608  
  
Average map value = 0.5204 for 10778 atoms, 7669 outside contour  

> select #13:79-81

101 atoms, 109 bonds, 3 residues, 1 model selected  

> color zone #10 near sel & #13 distance 17.8

[Repeated 1 time(s)]

> undo

[Repeated 1 time(s)]

> select #13:79-81

101 atoms, 109 bonds, 3 residues, 1 model selected  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4591, correlation about mean = 0.2019, overlap = 206.3  
steps = 92, shift = 19.2, angle = 0.00551 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99934082 0.03629723 0.00054933 225.67550212  
0.02815349 -0.78450050 0.61948870 152.29683440  
0.02291671 -0.61906495 -0.78500530 174.12797619  
Axis -0.99981537 -0.01805595 -0.00657399  
Axis point 0.00000000 104.06401785 60.61420040  
Rotation angle (degrees) 141.72830964  
Shift along axis -229.52841360  
  
Average map value = 0.5204 for 10778 atoms, 7669 outside contour  

> select #13:79-81

101 atoms, 109 bonds, 3 residues, 1 model selected  

> color zone #10 near sel & #13 distance 17.8

[Repeated 1 time(s)]

> undo

[Repeated 1 time(s)]

> color sel magenta

> color zone #10 near sel & #13 distance 17.8

> scalebar off

> scalebar 50

> select up

10778 atoms, 11624 bonds, 336 residues, 1 model selected  

> select down

101 atoms, 109 bonds, 3 residues, 1 model selected  

> select #13:77-79

97 atoms, 104 bonds, 3 residues, 1 model selected  

> color sel magenta

> color zone #10 near sel & #13 distance 17.8

> select #13:63-68

189 atoms, 203 bonds, 6 residues, 1 model selected  

> color sel lime

> color zone #10 near sel & #13 distance 17.8

> undo

[Repeated 3 time(s)]

> color zone #10 near sel & #13 distance 17.8

> scalebar off

> scalebar 50

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4591, correlation about mean = 0.2019, overlap = 206.3  
steps = 48, shift = 0.878, angle = 0.0129 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99933961 0.03633206 0.00044301 225.68025355  
0.02824218 -0.78437615 0.61964212 152.30328112  
0.02286040 -0.61922047 -0.78488428 174.12118465  
Axis -0.99981501 -0.01809179 -0.00652888  
Axis point 0.00000000 104.07330914 60.60800796  
Rotation angle (degrees) 141.71701797  
Shift along axis -229.53076058  
  
Average map value = 0.5204 for 10778 atoms, 7668 outside contour  

> save /Users/francescappadoo/Desktop/image25.png supersample 3

> undo

> save /Users/francescappadoo/Desktop/image26.png supersample 3

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4591, correlation about mean = 0.2019, overlap = 206.3  
steps = 60, shift = 4.5, angle = 0.00524 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99934286 0.03624274 0.00042546 225.68550234  
0.02818276 -0.78437344 0.61964824 152.29999484  
0.02279151 -0.61922913 -0.78487945 174.11304635  
Axis -0.99981592 -0.01805016 -0.00650467  
Axis point 0.00000000 104.07627066 60.60521149  
Rotation angle (degrees) 141.71651924  
Shift along axis -229.52554611  
  
Average map value = 0.5204 for 10778 atoms, 7670 outside contour  

> scalebar off

> scalebar 50

> scalebar off

> scalebar 50

> scalebar off

> scalebar 50

> scalebar off

> scalebar 50

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4591, correlation about mean = 0.2019, overlap = 206.3  
steps = 60, shift = 1.39, angle = 0.00721 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99934110 0.03629063 0.00047606 225.67443104  
0.02819142 -0.78443814 0.61956594 152.30090562  
0.02285792 -0.61914436 -0.78494439 174.12406972  
Axis -0.99981544 -0.01806534 -0.00653722  
Axis point 0.00000000 104.07061698 60.61191236  
Rotation angle (degrees) 141.72259557  
Shift along axis -229.52243515  
  
Average map value = 0.5204 for 10778 atoms, 7669 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4591, correlation about mean = 0.2019, overlap = 206.3  
steps = 40, shift = 0.0102, angle = 0.00775 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99933905 0.03634653 0.00049904 225.66684600  
0.02822384 -0.78451195 0.61947101 152.30243902  
0.02290716 -0.61904756 -0.78501930 174.13342644  
Axis -0.99981487 -0.01808934 -0.00655718  
Axis point 0.00000000 104.06370417 60.62008691  
Rotation angle (degrees) 141.72956815  
Shift along axis -229.52194292  
  
Average map value = 0.5204 for 10778 atoms, 7671 outside contour  

> select #13:63-68

189 atoms, 203 bonds, 6 residues, 1 model selected  

> color sel cyan

> color sel #f4ffb9ff

> color sel #f7ff9bff

> color sel #e9ff7eff

> color sel #e3ff23ff

> color sel #c3ff00ff

> color sel #7dff09ff

> color sel #00ff08ff

> color sel #00ff4bff

> color sel #00ff61ff

> color sel #00ff60ff

> scalebar off

> scalebar 50

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4591, correlation about mean = 0.2019, overlap = 206.3  
steps = 56, shift = 3.2, angle = 0.0273 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99934129 0.03628662 0.00034942 225.68990167  
0.02825921 -0.78423236 0.61982331 152.30760468  
0.02276537 -0.61940522 -0.78474124 174.10403665  
Axis -0.99981547 -0.01808529 -0.00647655  
Axis point 0.00000000 104.08647300 60.59464539  
Rotation angle (degrees) 141.70367925  
Shift along axis -229.53037605  
  
Average map value = 0.5204 for 10778 atoms, 7670 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4591, correlation about mean = 0.202, overlap = 206.3  
steps = 44, shift = 0.0492, angle = 0.0212 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99934119 0.03628929 0.00037110 225.73454927  
0.02823947 -0.78400397 0.62011307 152.30291533  
0.02279445 -0.61969412 -0.78451228 174.07351530  
Axis -0.99981542 -0.01808282 -0.00649161  
Axis point 0.00000000 104.09588814 60.56309010  
Rotation angle (degrees) 141.68254723  
Shift along axis -229.57696623  
  
Average map value = 0.5204 for 10778 atoms, 7672 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4591, correlation about mean = 0.2019, overlap = 206.3  
steps = 40, shift = 0.0676, angle = 0.0537 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99934290 0.03624029 0.00052400 225.66846686  
0.02812737 -0.78458019 0.61938896 152.29407289  
0.02285799 -0.61896730 -0.78508401 174.13288836  
Axis -0.99981596 -0.01803187 -0.00655015  
Axis point 0.00000000 104.06111608 60.62409769  
Rotation angle (degrees) 141.73554035  
Shift along axis -229.51367856  
  
Average map value = 0.5204 for 10778 atoms, 7669 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4591, correlation about mean = 0.2019, overlap = 206.3  
steps = 40, shift = 0.00646, angle = 0.00718 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99933951 0.03633364 0.00052138 225.66689552  
0.02820037 -0.78452581 0.61945452 152.30054756  
0.02291611 -0.61903074 -0.78503229 174.13420806  
Axis -0.99981500 -0.01807901 -0.00656589  
Axis point 0.00000000 104.06267725 60.62029897  
Rotation angle (degrees) 141.73078933  
Shift along axis -229.52193796  
  
Average map value = 0.5204 for 10778 atoms, 7670 outside contour  

> save /Users/francescappadoo/Desktop/image27.png supersample 3

> select #13:63-68

189 atoms, 203 bonds, 6 residues, 1 model selected  

> color sel orange

> hide #13 models

> movie record

> turn y 2 180

> wait 180

> movie encode /Users/francescappadoo/Desktop/movie12.mp4

Movie saved to /Users/francescappadoo/Desktop/movie12.mp4  
  

> hide #!10 models

> show #!3 models

> scalebar off

> scalebar 50

> movie record

> turn y 2 180

> wait 180

> movie encode /Users/francescappadoo/Desktop/movie13.mp4

Movie saved to /Users/francescappadoo/Desktop/movie13.mp4  
  

> show #!10 models

> tile

3 models tiled  

> select add #10

189 atoms, 203 bonds, 6 residues, 3 models selected  

> view matrix models
> #13,-0.45442,-0.88681,0.084049,170.41,0.57936,-0.22256,0.78409,-18.346,-0.67664,0.405,0.61492,-229.18,#10,-0.4863,0.73498,0.47257,31.612,0.5713,0.67666,-0.46449,-60.226,-0.66116,0.044101,-0.74895,216.34

> view matrix models
> #13,-0.58107,-0.70277,0.41045,90.669,0.79504,-0.59798,0.10167,144.87,0.17399,0.3854,0.9062,-231.54,#10,-0.60601,0.78921,0.099508,117.61,0.77284,0.55453,0.30857,-227.69,0.18835,0.2639,-0.94598,51.268

> select subtract #10

189 atoms, 203 bonds, 6 residues, 1 model selected  

> select add #10

189 atoms, 203 bonds, 6 residues, 3 models selected  

> ui mousemode right "translate selected models"

> view matrix models
> #13,-0.58107,-0.70277,0.41045,190.1,0.79504,-0.59798,0.10167,193.22,0.17399,0.3854,0.9062,-139.99,#10,-0.60601,0.78921,0.099508,217.04,0.77284,0.55453,0.30857,-179.34,0.18835,0.2639,-0.94598,142.82

> fitmap #10 inMap #3

Fit map cryosparc_P12_J2769_004_volume_map.mrc in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 4164 points  
correlation = 0.8568, correlation about mean = 0.5777, overlap = 3558  
steps = 72, shift = 8.38, angle = 16.9 degrees  
  
Position of cryosparc_P12_J2769_004_volume_map.mrc (#10) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.99754650 -0.05891673 -0.03781178 17.10569699  
0.04862661 0.97169289 -0.23118896 40.23935708  
0.05036233 0.22878308 0.97217379 -54.08942390  
Axis 0.95720688 -0.18349129 0.22379886  
Axis point 0.00000000 250.51338671 140.90842104  
Rotation angle (degrees) 13.90234875  
Shift along axis -3.11503189  
  

> fitmap #10 inMap #3

Fit map cryosparc_P12_J2769_004_volume_map.mrc in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 4164 points  
correlation = 0.8568, correlation about mean = 0.578, overlap = 3558  
steps = 60, shift = 13.1, angle = 0.0643 degrees  
  
Position of cryosparc_P12_J2769_004_volume_map.mrc (#10) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.99762035 -0.05819987 -0.03696405 16.85215219  
0.04813073 0.97175517 -0.23103089 40.28308393  
0.04936597 0.22870201 0.97224397 -53.90007579  
Axis 0.95837312 -0.17996616 0.22165999  
Axis point 0.00000000 249.89099617 141.43868794  
Rotation angle (degrees) 13.87772852  
Shift along axis -3.04643256  
  

> fitmap #10 inMap #3

Fit map cryosparc_P12_J2769_004_volume_map.mrc in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 4164 points  
correlation = 0.8568, correlation about mean = 0.578, overlap = 3558  
steps = 44, shift = 0.00415, angle = 0.00974 degrees  
  
Position of cryosparc_P12_J2769_004_volume_map.mrc (#10) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.99760935 -0.05833038 -0.03705523 16.90051369  
0.04823386 0.97173557 -0.23109181 40.27876223  
0.04948755 0.22875204 0.97222602 -53.93012691  
Axis 0.95821192 -0.18033583 0.22205608  
Axis point 0.00000000 249.96408034 141.34885480  
Rotation angle (degrees) 13.88352672  
Shift along axis -3.04494328  
  

> fitmap #10 inMap #3

Fit map cryosparc_P12_J2769_004_volume_map.mrc in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 4164 points  
correlation = 0.8568, correlation about mean = 0.5777, overlap = 3558  
steps = 56, shift = 1.77, angle = 0.0366 degrees  
  
Position of cryosparc_P12_J2769_004_volume_map.mrc (#10) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.99757097 -0.05862415 -0.03762060 17.02112739  
0.04839194 0.97173462 -0.23106275 40.25037141  
0.05010309 0.22868096 0.97221121 -54.02820514  
Axis 0.95756634 -0.18271321 0.22289593  
Axis point 0.00000000 250.38870779 141.11743889  
Rotation angle (degrees) 13.88998879  
Shift along axis -3.09808285  
  

> fitmap #10 inMap #3

Fit map cryosparc_P12_J2769_004_volume_map.mrc in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 4164 points  
correlation = 0.8568, correlation about mean = 0.5777, overlap = 3558  
steps = 40, shift = 0.00228, angle = 0.00516 degrees  
  
Position of cryosparc_P12_J2769_004_volume_map.mrc (#10) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.99757474 -0.05861271 -0.03753838 17.00033941  
0.04839788 0.97172620 -0.23109691 40.25714738  
0.05002224 0.22871966 0.97220627 -54.01927581  
Axis 0.95764074 -0.18235883 0.22286647  
Axis point 0.00000000 250.31024207 141.12953326  
Rotation angle (degrees) 13.89113282  
Shift along axis -3.10011401  
  

> fitmap #10 inMap #3

Fit map cryosparc_P12_J2769_004_volume_map.mrc in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 4164 points  
correlation = 0.8568, correlation about mean = 0.5777, overlap = 3558  
steps = 44, shift = 0.0071, angle = 0.00758 degrees  
  
Position of cryosparc_P12_J2769_004_volume_map.mrc (#10) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.99756591 -0.05870570 -0.03762753 17.02972928  
0.04846645 0.97171550 -0.23112752 40.25342427  
0.05013176 0.22874127 0.97219555 -54.04211734  
Axis 0.95750561 -0.18272607 0.22314612  
Axis point 0.00000000 250.37303984 141.06383989  
Rotation angle (degrees) 13.89474226  
Shift along axis -3.10857722  
  

> fitmap #10 inMap #3

Fit map cryosparc_P12_J2769_004_volume_map.mrc in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 4164 points  
correlation = 0.8568, correlation about mean = 0.578, overlap = 3558  
steps = 40, shift = 0.0533, angle = 0.0522 degrees  
  
Position of cryosparc_P12_J2769_004_volume_map.mrc (#10) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.99762424 -0.05817912 -0.03689181 16.83124820  
0.04812720 0.97175598 -0.23102823 40.28411862  
0.04929085 0.22870387 0.97224735 -53.88649375  
Axis 0.95843668 -0.17967121 0.22162444  
Axis point 0.00000000 249.82773717 141.45546820  
Rotation angle (degrees) 13.87676497  
Shift along axis -3.04877451  
  

> fitmap #10 inMap #3

Fit map cryosparc_P12_J2769_004_volume_map.mrc in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 4164 points  
correlation = 0.8568, correlation about mean = 0.578, overlap = 3558  
steps = 68, shift = 15.1, angle = 0.00935 degrees  
  
Position of cryosparc_P12_J2769_004_volume_map.mrc (#10) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.99763504 -0.05805791 -0.03679049 16.79499558  
0.04803446 0.97177048 -0.23098652 40.28926127  
0.04916250 0.22867304 0.97226110 -53.85901933  
Axis 0.95860145 -0.17925148 0.22125136  
Axis point 0.00000000 249.75796724 141.54093807  
Rotation angle (degrees) 13.87209893  
Shift along axis -3.03858401  
  

> fitmap #10 inMap #3

Fit map cryosparc_P12_J2769_004_volume_map.mrc in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 4164 points  
correlation = 0.8568, correlation about mean = 0.5777, overlap = 3558  
steps = 84, shift = 14.9, angle = 0.0607 degrees  
  
Position of cryosparc_P12_J2769_004_volume_map.mrc (#10) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.99756621 -0.05871316 -0.03760803 17.03126741  
0.04847772 0.97171274 -0.23113678 40.25295702  
0.05011497 0.22875109 0.97219410 -54.04061297  
Axis 0.95751380 -0.18264448 0.22317776  
Axis point 0.00000000 250.35908129 141.05882998  
Rotation angle (degrees) 13.89520920  
Shift along axis -3.10496988  
  

> fitmap #10 inMap #3

Fit map cryosparc_P12_J2769_004_volume_map.mrc in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 4164 points  
correlation = 0.8567, correlation about mean = 0.5776, overlap = 3558  
steps = 60, shift = 8.39, angle = 0.0279 degrees  
  
Position of cryosparc_P12_J2769_004_volume_map.mrc (#10) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.99759865 -0.05834172 -0.03732442 16.89618169  
0.04818808 0.97176047 -0.23099666 40.27366138  
0.04974714 0.22864336 0.97223833 -53.95848659  
Axis 0.95800134 -0.18147826 0.22203394  
Axis point 0.00000000 250.14105589 141.32975362  
Rotation angle (degrees) 13.88036104  
Shift along axis -3.10284480  
  

> fitmap #10 inMap #3

Fit map cryosparc_P12_J2769_004_volume_map.mrc in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 4164 points  
correlation = 0.8568, correlation about mean = 0.5781, overlap = 3558  
steps = 68, shift = 12.2, angle = 0.0269 degrees  
  
Position of cryosparc_P12_J2769_004_volume_map.mrc (#10) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.99760788 -0.05845259 -0.03690185 16.88932889  
0.04838391 0.97170872 -0.23117335 40.27447034  
0.04937053 0.22883490 0.97221247 -53.91984614  
Axis 0.95821629 -0.17970897 0.22254487  
Axis point 0.00000000 249.81264920 141.27142853  
Rotation angle (degrees) 13.88852501  
Shift along axis -3.05363860  
  

> fitmap #10 inMap #3

Fit map cryosparc_P12_J2769_004_volume_map.mrc in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 4164 points  
correlation = 0.8568, correlation about mean = 0.578, overlap = 3558  
steps = 56, shift = 11.6, angle = 0.0197 degrees  
  
Position of cryosparc_P12_J2769_004_volume_map.mrc (#10) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.99759306 -0.05849224 -0.03723824 16.95991802  
0.04834821 0.97172350 -0.23111866 40.26346278  
0.04970392 0.22876197 0.97221265 -53.96915476  
Axis 0.95795157 -0.18110436 0.22255336  
Axis point 0.00000000 250.09868372 141.21783061  
Rotation angle (degrees) 13.88850860  
Shift along axis -3.05612548  
  

> fitmap #10 inMap #3

Fit map cryosparc_P12_J2769_004_volume_map.mrc in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 4164 points  
correlation = 0.8568, correlation about mean = 0.578, overlap = 3558  
steps = 64, shift = 11.5, angle = 0.0358 degrees  
  
Position of cryosparc_P12_J2769_004_volume_map.mrc (#10) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.99763403 -0.05807447 -0.03679185 16.80093953  
0.04805017 0.97176923 -0.23098853 40.28552330  
0.04916772 0.22867416 0.97226057 -53.85878549  
Axis 0.95858535 -0.17926098 0.22131342  
Axis point 0.00000000 249.75553465 141.52422145  
Rotation angle (degrees) 13.87243317  
Shift along axis -3.03615974  
  

> fitmap #10 inMap #3

Fit map cryosparc_P12_J2769_004_volume_map.mrc in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 4164 points  
correlation = 0.8568, correlation about mean = 0.5777, overlap = 3558  
steps = 76, shift = 5.59, angle = 0.0621 degrees  
  
Position of cryosparc_P12_J2769_004_volume_map.mrc (#10) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.99756358 -0.05874597 -0.03762639 17.03267726  
0.04850469 0.97170779 -0.23115192 40.25528116  
0.05014110 0.22876368 0.97218979 -54.04780324  
Axis 0.95747580 -0.18271885 0.22327991  
Axis point 0.00000000 250.36666823 141.04458248  
Rotation angle (degrees) 13.89662639  
Shift along axis -3.11481096  
  

> fitmap #10 inMap #3

Fit map cryosparc_P12_J2769_004_volume_map.mrc in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 4164 points  
correlation = 0.8568, correlation about mean = 0.5781, overlap = 3558  
steps = 44, shift = 7.16, angle = 0.0449 degrees  
  
Position of cryosparc_P12_J2769_004_volume_map.mrc (#10) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.99761003 -0.05840145 -0.03692473 16.89545401  
0.04833157 0.97172405 -0.23111983 40.26468255  
0.04937838 0.22878283 0.97222432 -53.91200502  
Axis 0.95823323 -0.17981743 0.22238430  
Axis point 0.00000000 249.84511255 141.28381304  
Rotation angle (degrees) 13.88502314  
Shift along axis -3.03968957  
  

> fitmap #10 inMap #3

Fit map cryosparc_P12_J2769_004_volume_map.mrc in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 4164 points  
correlation = 0.8568, correlation about mean = 0.578, overlap = 3558  
steps = 48, shift = 1.8, angle = 0.00836 degrees  
  
Position of cryosparc_P12_J2769_004_volume_map.mrc (#10) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.99761276 -0.05829589 -0.03701777 16.88582648  
0.04820957 0.97174018 -0.23107750 40.27940210  
0.04944252 0.22874126 0.97223085 -53.92000798  
Axis 0.95826339 -0.18018346 0.22195762  
Axis point 0.00000000 249.93305584 141.37145220  
Rotation angle (degrees) 13.88199349  
Shift along axis -3.04456971  
  

> transparency sel 0

> fitmap #10 inMap #3

Fit map cryosparc_P12_J2769_004_volume_map.mrc in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 4164 points  
correlation = 0.8568, correlation about mean = 0.5777, overlap = 3558  
steps = 72, shift = 13.9, angle = 0.0465 degrees  
  
Position of cryosparc_P12_J2769_004_volume_map.mrc (#10) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.99756281 -0.05869859 -0.03772062 17.05066249  
0.04844003 0.97172527 -0.23109201 40.24794974  
0.05021885 0.22870161 0.97220038 -54.05210616  
Axis 0.95744179 -0.18311895 0.22309791  
Axis point 0.00000000 250.46172604 141.05984982  
Rotation angle (degrees) 13.89337027  
Shift along axis -3.10405733  
  

> fitmap #10 inMap #3

Fit map cryosparc_P12_J2769_004_volume_map.mrc in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 4164 points  
correlation = 0.8568, correlation about mean = 0.578, overlap = 3558  
steps = 40, shift = 0.0518, angle = 0.0612 degrees  
  
Position of cryosparc_P12_J2769_004_volume_map.mrc (#10) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.99763034 -0.05811013 -0.03683542 16.80896704  
0.04807429 0.97176501 -0.23100123 40.28662163  
0.04921888 0.22868300 0.97225590 -53.87024704  
Axis 0.95852858 -0.17943949 0.22141459  
Axis point 0.00000000 249.78670315 141.50377468  
Rotation angle (degrees) 13.87393446  
Shift along axis -3.04479436  
  

> fitmap #10 inMap #3

Fit map cryosparc_P12_J2769_004_volume_map.mrc in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 4164 points  
correlation = 0.8568, correlation about mean = 0.5777, overlap = 3558  
steps = 48, shift = 4.82, angle = 0.0281 degrees  
  
Position of cryosparc_P12_J2769_004_volume_map.mrc (#10) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.99760112 -0.05833302 -0.03727202 16.90354102  
0.04819126 0.97175870 -0.23100342 40.27010628  
0.04969453 0.22865309 0.97223874 -53.95120164  
Axis 0.95804464 -0.18126108 0.22202451  
Axis point 0.00000000 250.11712382 141.32930292  
Rotation angle (degrees) 13.88022881  
Shift along axis -3.08354508  
  

> fitmap #10 inMap #3

Fit map cryosparc_P12_J2769_004_volume_map.mrc in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 4164 points  
correlation = 0.8568, correlation about mean = 0.5781, overlap = 3558  
steps = 48, shift = 0.0405, angle = 0.0167 degrees  
  
Position of cryosparc_P12_J2769_004_volume_map.mrc (#10) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.99760845 -0.05837462 -0.03700971 16.90040137  
0.04828569 0.97172506 -0.23112518 40.27730340  
0.04945511 0.22878539 0.97221982 -53.92943270  
Axis 0.95820875 -0.18014664 0.22222329  
Axis point 0.00000000 249.92130233 141.31760663  
Rotation angle (degrees) 13.88562857  
Shift along axis -3.04608421  
  

> fitmap #10 inMap #3

Fit map cryosparc_P12_J2769_004_volume_map.mrc in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 4164 points  
correlation = 0.8568, correlation about mean = 0.5777, overlap = 3558  
steps = 64, shift = 1.39, angle = 0.0417 degrees  
  
Position of cryosparc_P12_J2769_004_volume_map.mrc (#10) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.99756244 -0.05877019 -0.03761883 17.04149601  
0.04852926 0.97170308 -0.23116656 40.25274180  
0.05014003 0.22877746 0.97218660 -54.04938466  
Axis 0.95746215 -0.18268698 0.22336449  
Axis point 0.00000000 250.36179417 141.02457003  
Rotation angle (degrees) 13.89770440  
Shift along axis -3.10977751  
  

> fitmap #10 inMap #3

Fit map cryosparc_P12_J2769_004_volume_map.mrc in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 4164 points  
correlation = 0.8568, correlation about mean = 0.5777, overlap = 3558  
steps = 40, shift = 0.012, angle = 0.0211 degrees  
  
Position of cryosparc_P12_J2769_004_volume_map.mrc (#10) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.99758636 -0.05846557 -0.03745882 16.95960118  
0.04827606 0.97174741 -0.23103321 40.26271302  
0.04990800 0.22866721 0.97222448 -53.99106688  
Axis 0.95781062 -0.18203347 0.22240194  
Axis point 0.00000000 250.25890652 141.23192274  
Rotation angle (degrees) 13.88504114  
Shift along axis -3.09279317  
  

> fitmap #10 inMap #3

Fit map cryosparc_P12_J2769_004_volume_map.mrc in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 4164 points  
correlation = 0.8568, correlation about mean = 0.5777, overlap = 3558  
steps = 60, shift = 0.00183, angle = 0.00457 degrees  
  
Position of cryosparc_P12_J2769_004_volume_map.mrc (#10) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.99758103 -0.05852745 -0.03750415 16.97925172  
0.04832478 0.97173957 -0.23105599 40.25973348  
0.04996738 0.22868470 0.97221732 -54.00431086  
Axis 0.95773040 -0.18222041 0.22259426  
Axis point 0.00000000 250.29137890 141.18788159  
Rotation angle (degrees) 13.88746841  
Shift along axis -3.09564909  
  

> fitmap #10 inMap #3

Fit map cryosparc_P12_J2769_004_volume_map.mrc in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 4164 points  
correlation = 0.8568, correlation about mean = 0.578, overlap = 3558  
steps = 44, shift = 0.027, angle = 0.0287 degrees  
  
Position of cryosparc_P12_J2769_004_volume_map.mrc (#10) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.99758039 -0.05877171 -0.03713754 16.98324872  
0.04863423 0.97166601 -0.23130030 40.26103021  
0.04967919 0.22893449 0.97217330 -53.98927955  
Axis 0.95780609 -0.18067647 0.22352518  
Axis point 0.00000000 249.96894356 141.04064366  
Rotation angle (degrees) 13.90157254  
Shift along axis -3.07552502  
  

> fitmap #10 inMap #3

Fit map cryosparc_P12_J2769_004_volume_map.mrc in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 4164 points  
correlation = 0.8568, correlation about mean = 0.5777, overlap = 3558  
steps = 52, shift = 6.38, angle = 0.0316 degrees  
  
Position of cryosparc_P12_J2769_004_volume_map.mrc (#10) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.99755755 -0.05882016 -0.03767035 17.06293387  
0.04856590 0.97170025 -0.23117077 40.24572003  
0.05020178 0.22877666 0.97218361 -54.05942813  
Axis 0.95738291 -0.18290629 0.22352462  
Axis point 0.00000000 250.40169959 140.98129724  
Rotation angle (degrees) 13.89898295  
Shift along axis -3.10904704  
  

> fitmap #10 inMap #3

Fit map cryosparc_P12_J2769_004_volume_map.mrc in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 4164 points  
correlation = 0.8568, correlation about mean = 0.5779, overlap = 3558  
steps = 52, shift = 5.58, angle = 0.102 degrees  
  
Position of cryosparc_P12_J2769_004_volume_map.mrc (#10) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.99767561 -0.05748361 -0.03659159 16.65158091  
0.04753466 0.97186145 -0.23070700 40.30705835  
0.04882382 0.22843138 0.97233496 -53.75952260  
Axis 0.95917992 -0.17844021 0.21939226  
Axis point 0.00000000 249.63561483 141.93192880  
Rotation angle (degrees) 13.84753326  
Shift along axis -3.01496132  
  

> fitmap #10 inMap #3

Fit map cryosparc_P12_J2769_004_volume_map.mrc in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 4164 points  
correlation = 0.8568, correlation about mean = 0.5777, overlap = 3558  
steps = 52, shift = 2.82, angle = 0.105 degrees  
  
Position of cryosparc_P12_J2769_004_volume_map.mrc (#10) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.99755375 -0.05882880 -0.03775751 17.07076267  
0.04855418 0.97170015 -0.23117364 40.25279800  
0.05028865 0.22877485 0.97217954 -54.07703991  
Axis 0.95732097 -0.18325625 0.22350324  
Axis point 0.00000000 250.47274074 140.98736275  
Rotation angle (degrees) 13.89993288  
Shift along axis -3.12077149  
  

> surface dust #10 size 29.6

[Repeated 1 time(s)]

> fitmap #10 inMap #3

Fit map cryosparc_P12_J2769_004_volume_map.mrc in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 4164 points  
correlation = 0.8568, correlation about mean = 0.5777, overlap = 3558  
steps = 68, shift = 2.1, angle = 0.0137 degrees  
  
Position of cryosparc_P12_J2769_004_volume_map.mrc (#10) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.99756944 -0.05863951 -0.03763726 17.02343676  
0.04840184 0.97172834 -0.23108710 40.25342177  
0.05012402 0.22870372 0.97220478 -54.03528877  
Axis 0.95754956 -0.18276957 0.22292179  
Axis point 0.00000000 250.39304543 141.10460914  
Rotation angle (degrees) 13.89168886  
Shift along axis -3.10195938  
  

> open
> /Volumes/astbury/Users/um18fa/240607_RNA_MSI2_1/Class3D/job008/run_it011_class005.mrc

Opened run_it011_class005.mrc as #19, grid size 128,128,128, pixel 2.92, shown
at level 0.00366, step 1, values float32  

> open
> /Volumes/astbury/Users/um18fa/240607_RNA_MSI2_1/Class3D/job008/run_it011_class006.mrc

Opened run_it011_class006.mrc as #20, grid size 128,128,128, pixel 2.92, shown
at level 0.00513, step 1, values float32  

> show #11 models

> hide #11 models

> hide #!10 models

> hide #!3 models

> tile

3 models tiled  

> surface dust #19 size 29.2

> surface dust #20 size 29.2

> volume #19 level 0.006384

> volume #18 level 0.03422

> volume #20 level 0.009231

> tile

3 models tiled  

> close #19

> close #20

> show #13 models

> tile

2 models tiled  

> show #!10 models

> tile

3 models tiled  

> ui mousemode right "rotate selected models"

> view matrix models
> #13,0.041911,-0.78613,0.61663,202.36,-0.619,-0.50489,-0.6016,185.7,0.78427,-0.35648,-0.50777,-126.02,#10,0.63952,0.45109,-0.62252,12.456,-0.75426,0.21155,-0.62157,317.95,-0.14869,0.86705,0.47552,-493.51

> select add #13

10778 atoms, 11624 bonds, 336 residues, 3 models selected  

> select subtract #13

2 models selected  

> view matrix models
> #10,0.77501,0.0652,0.62858,-186.55,-0.59706,0.4015,0.6945,-6.8623,-0.20709,-0.91354,0.35009,-121.02

> view matrix models
> #10,0.57872,0.37525,0.72406,-226.46,-0.72878,0.63642,0.25267,60.789,-0.36599,-0.67391,0.64179,-193.35

> view matrix models
> #10,-0.54484,-0.29115,0.78637,101.91,0.83819,-0.21614,0.50072,-126.13,0.024183,0.93194,0.36181,-516.43

> view matrix models
> #10,-0.86106,-0.37933,-0.33866,400.28,-0.14463,-0.4558,0.87825,32.662,-0.48751,0.80521,0.33761,-389.97

> view matrix models
> #10,-0.6145,-0.044817,0.78765,68.388,0.66904,-0.55868,0.49017,-26.979,0.41807,0.82817,0.37329,-574.31

> view matrix models
> #10,0.54071,-0.6166,-0.57222,223.31,-0.83443,-0.47934,-0.27196,395.12,-0.1066,0.62453,-0.77369,-209.98

> select add #13

10778 atoms, 11624 bonds, 336 residues, 3 models selected  

> select subtract #10

10778 atoms, 11624 bonds, 336 residues, 1 model selected  

> view matrix models
> #13,-0.71363,0.57259,-0.40359,243.79,-0.24932,0.3308,0.91017,203.88,0.65466,0.75015,-0.093307,-96.516

> view matrix models
> #13,-0.70898,0.67782,-0.1947,244.66,-0.21149,0.05902,0.9756,194.79,0.67277,0.73285,0.10151,-99.171

> select subtract #13

Nothing selected  

> transparency #10.1 50

> select add #13

10778 atoms, 11624 bonds, 336 residues, 1 model selected  

> fitmap #13 inMap #10 resolution 15 search 200

Found 107 unique fits from 200 random placements having fraction of points
inside contour >= 0.100 (198 of 200).  
  
Correlations and times found:  
0.491 (2), 0.4793 (4), 0.4761 (3), 0.4757 (2), 0.4672 (3), 0.4668 (3), 0.4652
(10), 0.4641 (5), 0.4636 (7), 0.4631 (1), 0.4622 (1), 0.462 (3), 0.4612 (1),
0.4591 (1), 0.4579 (3), 0.4542 (2), 0.4506 (1), 0.4504 (2), 0.4498 (1), 0.449
(2), 0.4484 (1), 0.4458 (5), 0.4438 (1), 0.4415 (2), 0.4407 (2), 0.4407 (3),
0.44 (2), 0.4395 (6), 0.4395 (2), 0.4389 (2), 0.4385 (2), 0.4375 (2), 0.4335
(1), 0.4333 (1), 0.4329 (1), 0.4324 (1), 0.432 (1), 0.4312 (2), 0.4292 (3),
0.4285 (1), 0.4254 (3), 0.4247 (1), 0.4238 (2), 0.4234 (1), 0.4223 (2), 0.422
(1), 0.4218 (1), 0.4217 (1), 0.4216 (2), 0.4211 (2), 0.4209 (1), 0.4198 (1),
0.4197 (1), 0.4195 (1), 0.4177 (2), 0.4173 (1), 0.4168 (2), 0.4159 (1), 0.4159
(1), 0.4146 (2), 0.4146 (3), 0.4136 (1), 0.4135 (2), 0.4127 (1), 0.4125 (3),
0.4122 (2), 0.4118 (1), 0.4112 (1), 0.4108 (1), 0.4096 (1), 0.4071 (1), 0.4068
(4), 0.4057 (2), 0.404 (2), 0.4029 (2), 0.4027 (2), 0.4021 (1), 0.4017 (1),
0.4016 (2), 0.4013 (1), 0.4011 (1), 0.3993 (1), 0.399 (2), 0.398 (1), 0.3975
(1), 0.3967 (1), 0.3945 (1), 0.3914 (3), 0.391 (1), 0.3888 (1), 0.388 (2),
0.3831 (3), 0.3804 (1), 0.3777 (1), 0.3767 (2), 0.3755 (1), 0.3698 (1), 0.3688
(1), 0.3678 (2), 0.357 (1), 0.3567 (1), 0.3562 (1), 0.3558 (2), 0.3477 (1),
0.344 (2), 0.3267 (1), 0.3234 (1)  
  
Best fit found:  
Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.491, correlation about mean = 0.2304, overlap = 225.2  
steps = 124, shift = 47, angle = 11.6 degrees  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.42761401 0.04108881 0.90302704 186.23097556  
0.67770147 -0.67566364 -0.29017119 174.40957083  
0.59821975 0.73606408 -0.31676921 231.81231164  
Axis 0.82393540 0.24472119 0.51111838  
Axis point 0.00000000 44.49185029 78.79852013  
Rotation angle (degrees) 141.48171200  
Shift along axis 314.60754440  
  
Found 107 fits.  

> ui tool show "Fit in Map"

> fitmap #11 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0, correlation about mean = 0, overlap = 0  
steps = 24, shift = 0, angle = 0 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.41648523 0.34668768 0.84044500 391.03847331  
0.59373831 -0.80379144 0.03733895 128.01660093  
0.68848736 0.48345326 -0.54060903 -284.82118000  
Axis 0.83838433 0.28557457 0.46428319  
Axis point 0.00000000 29.12925896 -245.69960966  
Rotation angle (degrees) 164.57029226  
Shift along axis 232.16112926  
  
Average map value = 0 for 0 atoms, 10778 outside contour  
Average map value = 0.5611 for 10778 atoms, 7384 outside contour  
Correlation = 0.491, Correlation about mean = 0.2304, Overlap = 225.2  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2769_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5622, steps = 64  
shifted from previous position = 0.925  
rotated from previous position = 1.28 degrees  
atoms outside contour = 7433, contour level = 0.39813  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.42163610 0.06068111 0.90473238 186.95420656  
0.69033841 -0.66840431 -0.27689081 174.28513956  
0.58792498 0.74131873 -0.32371391 232.51576155  
Axis 0.82221066 0.25582399 0.50845227  
Axis point 0.00000000 42.96088868 78.13282084  
Rotation angle (degrees) 141.74297890  
Shift along axis 316.52522861  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2769_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5622, steps = 40  
shifted from previous position = 0.0513  
rotated from previous position = 0.0493 degrees  
atoms outside contour = 7434, contour level = 0.39813  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.42235231 0.06031716 0.90442260 186.91470955  
0.68998615 -0.66846014 -0.27763308 174.27520527  
0.58782442 0.74129809 -0.32394370 232.50422387  
Axis 0.82243087 0.25554241 0.50823768  
Axis point 0.00000000 42.97493998 78.20692940  
Rotation angle (degrees) 141.72306147  
Shift along axis 316.42654074  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2769_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5622, steps = 44  
shifted from previous position = 0.0551  
rotated from previous position = 0.055 degrees  
atoms outside contour = 7433, contour level = 0.39813  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.42155478 0.06072339 0.90476744 186.95751029  
0.69038246 -0.66839308 -0.27680809 174.28516355  
0.58793156 0.74132539 -0.32368668 232.51367253  
Axis 0.82218533 0.25585821 0.50847602  
Axis point 0.00000000 42.95890662 78.12304705  
Rotation angle (degrees) 141.74496169  
Shift along axis 316.53363789  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2769_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5622, steps = 28  
shifted from previous position = 0.0734  
rotated from previous position = 0.056 degrees  
atoms outside contour = 7433, contour level = 0.39813  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.42231912 0.06021335 0.90444502 186.89493452  
0.68992963 -0.66851238 -0.27764774 174.26676671  
0.58791459 0.74125942 -0.32386855 232.49071698  
Axis 0.82242013 0.25549040 0.50828120  
Axis point 0.00000000 42.98226923 78.20368709  
Rotation angle (degrees) 141.72353668  
Shift along axis 316.40030377  
  

> select subtract #13

Nothing selected  

> select #13:63-68

189 atoms, 203 bonds, 6 residues, 1 model selected  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2769_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5176, steps = 48  
shifted from previous position = 0.699  
rotated from previous position = 1.49 degrees  
atoms outside contour = 7519, contour level = 0.39813  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.57137038 0.33590728 0.74880042 205.59475359  
-0.51447228 -0.56426749 0.64569378 136.57733688  
0.63941700 -0.75416737 -0.14959078 184.94023207  
Axis -0.85276237 0.06663379 -0.51803116  
Axis point 0.00000000 91.39087698 -17.15588709  
Rotation angle (degrees) 124.83701548  
Shift along axis -262.02760524  
  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4664, correlation about mean = 0.2127, overlap = 203.9  
steps = 80, shift = 4.14, angle = 5.26 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.60489013 0.37469466 0.70264623 209.45794322  
-0.51168387 -0.49321182 0.70350672 140.82989280  
0.61015366 -0.78507703 -0.10661377 179.28007843  
Axis -0.85799068 0.05331091 -0.51089132  
Axis point -0.00000000 91.94775297 -25.01144793  
Rotation angle (degrees) 119.83260762  
Shift along axis -263.79782867  
  
Average map value = 0.5058 for 10778 atoms, 7502 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4664, correlation about mean = 0.2127, overlap = 203.9  
steps = 48, shift = 0.029, angle = 0.0337 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.60528385 0.37468136 0.70231420 209.44330661  
-0.51159666 -0.49282974 0.70383783 140.84591401  
0.60983626 -0.78532328 -0.10661617 179.26010632  
Axis -0.85810421 0.05328886 -0.51070291  
Axis point 0.00000000 91.97279154 -25.00867785  
Rotation angle (degrees) 119.80707005  
Shift along axis -263.76732217  
  
Average map value = 0.5059 for 10778 atoms, 7504 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4664, correlation about mean = 0.2127, overlap = 203.9  
steps = 44, shift = 0.0593, angle = 0.0444 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.60526048 0.37536717 0.70196804 209.53013432  
-0.51119501 -0.49268925 0.70422791 140.85809836  
0.61019617 -0.78508389 -0.10631954 179.26780236  
Axis -0.85807388 0.05287479 -0.51079690  
Axis point 0.00000000 91.90484632 -25.03040885  
Rotation angle (degrees) 119.79341072  
Shift along axis -263.91393061  
  
Average map value = 0.5057 for 10778 atoms, 7497 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4664, correlation about mean = 0.2127, overlap = 203.9  
steps = 52, shift = 2.94, angle = 0.0227 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.60553007 0.37518804 0.70183129 209.48875290  
-0.51121764 -0.49249170 0.70434965 140.86429832  
0.60990968 -0.78529344 -0.10641582 179.25778016  
Axis -0.85815980 0.05295459 -0.51064427  
Axis point 0.00000000 91.93880274 -25.01398010  
Rotation angle (degrees) 119.78116913  
Shift along axis -263.85237394  
  
Average map value = 0.5058 for 10778 atoms, 7504 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4664, correlation about mean = 0.2127, overlap = 203.9  
steps = 56, shift = 0.0026, angle = 0.00419 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.60547455 0.37520468 0.70187030 209.48520130  
-0.51123338 -0.49252647 0.70431392 140.86176581  
0.60995160 -0.78526368 -0.10639511 179.25922139  
Axis -0.85814175 0.05295412 -0.51067464  
Axis point 0.00000000 91.93498372 -25.01499875  
Rotation angle (degrees) 119.78346569  
Shift along axis -263.85192667  
  
Average map value = 0.5059 for 10778 atoms, 7504 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4664, correlation about mean = 0.2127, overlap = 203.9  
steps = 72, shift = 7.41, angle = 0.0147 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.60542621 0.37500494 0.70201872 209.47502517  
-0.51139304 -0.49258372 0.70415795 140.85972933  
0.60986573 -0.78532318 -0.10644820 179.25328457  
Axis -0.85813108 0.05309188 -0.51067828  
Axis point 0.00000000 91.95245135 -25.02230525  
Rotation angle (degrees) 119.78870334  
Shift along axis -263.81928081  
  
Average map value = 0.5058 for 10778 atoms, 7504 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4664, correlation about mean = 0.2127, overlap = 203.9  
steps = 68, shift = 10.4, angle = 0.0124 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.60541189 0.37482280 0.70212834 209.46237062  
-0.51152292 -0.49261762 0.70403989 140.85731506  
0.60977102 -0.78538887 -0.10650614 179.24823833  
Axis -0.85813095 0.05321146 -0.51066604  
Axis point 0.00000000 91.96936038 -25.02515917  
Rotation angle (degrees) 119.79220775  
Shift along axis -263.78690922  
  
Average map value = 0.5059 for 10778 atoms, 7504 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4664, correlation about mean = 0.2127, overlap = 203.9  
steps = 48, shift = 0.0209, angle = 0.0738 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.60587864 0.37563594 0.70129067 209.53046367  
-0.51095129 -0.49193397 0.70493243 140.89371421  
0.60978669 -0.78542888 -0.10612065 179.23226469  
Axis -0.85823388 0.05269314 -0.51054680  
Axis point -0.00000000 91.92340715 -25.04668903  
Rotation angle (degrees) 119.74151968  
Shift along axis -263.90847000  
  
Average map value = 0.5057 for 10778 atoms, 7500 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4645, correlation about mean = 0.2035, overlap = 207.5  
steps = 68, shift = 1.22, angle = 3.72 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.79378421 0.56416031 -0.22722164 248.75042098  
0.56543854 -0.54692993 0.61737095 181.11440386  
0.22402186 -0.61853919 -0.75314236 179.88191854  
Axis -0.93934752 -0.34296544 0.00097151  
Axis point 0.00000000 81.13282039 74.14416084  
Rotation angle (degrees) 138.86346336  
Shift along axis -295.60431439  
  
Average map value = 0.5191 for 10778 atoms, 7696 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4645, correlation about mean = 0.2035, overlap = 207.5  
steps = 92, shift = 4.38, angle = 0.0282 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.79387342 0.56413717 -0.22696727 248.77723694  
0.56517145 -0.54679945 0.61773100 181.08454638  
0.22437943 -0.61867565 -0.75292380 179.89703253  
Axis -0.93936678 -0.34291315 0.00078580  
Axis point 0.00000000 81.13038893 74.12527114  
Rotation angle (degrees) 138.84438188  
Shift along axis -295.64798233  
  
Average map value = 0.519 for 10778 atoms, 7695 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4645, correlation about mean = 0.2035, overlap = 207.5  
steps = 100, shift = 0.00514, angle = 0.00751 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.79380905 0.56418861 -0.22706456 248.77550828  
0.56527714 -0.54674782 0.61767999 181.09398453  
0.22434095 -0.61867437 -0.75293632 179.89592875  
Axis -0.93934769 -0.34296536 0.00082703  
Axis point 0.00000000 81.12948357 74.13144555  
Rotation angle (degrees) 138.84548202  
Shift along axis -295.64688169  
  
Average map value = 0.5191 for 10778 atoms, 7695 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4645, correlation about mean = 0.2035, overlap = 207.5  
steps = 80, shift = 0.0361, angle = 0.0362 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.79353899 0.56438603 -0.22751744 248.75396139  
0.56577045 -0.54662085 0.61734061 181.13891830  
0.22405262 -0.61860649 -0.75307792 179.88517029  
Axis -0.93927077 -0.34317533 0.00105210  
Axis point 0.00000000 81.12661350 74.16141544  
Rotation angle (degrees) 138.85787684  
Shift along axis -295.62047611  
  
Average map value = 0.5191 for 10778 atoms, 7700 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4591, correlation about mean = 0.2019, overlap = 206.3  
steps = 48, shift = 0.417, angle = 0.604 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99934056 0.03630652 0.00038827 225.67641298  
0.02825492 -0.78434686 0.61967865 152.30679843  
0.02280290 -0.61925904 -0.78485551 174.11707172  
Axis -0.99981528 -0.01808848 -0.00649759  
Axis point 0.00000000 104.07831674 60.60675136  
Rotation angle (degrees) 141.71428852  
Shift along axis -229.52106495  
  
Average map value = 0.5204 for 10778 atoms, 7668 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4591, correlation about mean = 0.202, overlap = 206.3  
steps = 44, shift = 0.0651, angle = 0.0311 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99934153 0.03628010 0.00037658 225.73505771  
0.02822907 -0.78401154 0.62010402 152.30169398  
0.02279267 -0.61968507 -0.78451948 174.07357623  
Axis -0.99981551 -0.01807723 -0.00649267  
Axis point 0.00000000 104.09530719 60.56347312  
Rotation angle (degrees) 141.68321334  
Shift along axis -229.57680785  
  
Average map value = 0.5204 for 10778 atoms, 7672 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4591, correlation about mean = 0.2019, overlap = 206.3  
steps = 36, shift = 0.0491, angle = 0.0431 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99933649 0.03641416 0.00068421 225.69040160  
0.02815917 -0.78443167 0.61957565 152.29420549  
0.02309804 -0.61914528 -0.78493662 174.12381381  
Axis -0.99981414 -0.01809097 -0.00666289  
Axis point 0.00000000 104.05954481 60.59950456  
Rotation angle (degrees) 141.72214962  
Shift along axis -229.56377268  
  
Average map value = 0.5204 for 10778 atoms, 7669 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4591, correlation about mean = 0.2019, overlap = 206.3  
steps = 56, shift = 0.0157, angle = 0.013 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99934101 0.03629267 0.00050376 225.67481553  
0.02817700 -0.78447076 0.61952535 152.29927250  
0.02287941 -0.61910289 -0.78497646 174.12579377  
Axis -0.99981542 -0.01806153 -0.00655093  
Axis point 0.00000000 104.06745103 60.61353212  
Rotation angle (degrees) 141.72559034  
Shift along axis -229.52460355  
  
Average map value = 0.5204 for 10778 atoms, 7669 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4592, correlation about mean = 0.202, overlap = 206.3  
steps = 44, shift = 0.053, angle = 0.0425 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99933088 0.03657359 0.00020328 225.71810034  
0.02856945 -0.78407330 0.62001034 152.33314008  
0.02283538 -0.61958967 -0.78459359 174.06157524  
Axis -0.99981254 -0.01825416 -0.00645583  
Axis point 0.00000000 104.08496089 60.56811710  
Rotation angle (degrees) 141.68998352  
Shift along axis -229.58021247  
  
Average map value = 0.5205 for 10778 atoms, 7671 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4591, correlation about mean = 0.202, overlap = 206.3  
steps = 44, shift = 0.0339, angle = 0.0174 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99933928 0.03634212 0.00035790 225.72581253  
0.02828929 -0.78400897 0.62010452 152.30784089  
0.02281650 -0.61968468 -0.78451909 174.07866816  
Axis -0.99981488 -0.01811150 -0.00649412  
Axis point 0.00000000 104.09547251 60.56613209  
Rotation angle (degrees) 141.68318057  
Shift along axis -229.57303771  
  
Average map value = 0.5204 for 10778 atoms, 7672 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4591, correlation about mean = 0.2018, overlap = 206.3  
steps = 104, shift = 25.6, angle = 0.0621 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99933850 0.03636104 0.00056762 225.65512870  
0.02819861 -0.78467163 0.61926992 152.29820702  
0.02296268 -0.61884426 -0.78517794 174.14823745  
Axis -0.99981473 -0.01808470 -0.00659141  
Axis point 0.00000000 104.05098474 60.63487816  
Rotation angle (degrees) 141.74431940  
Shift along axis -229.51547128  
  
Average map value = 0.5204 for 10778 atoms, 7671 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4591, correlation about mean = 0.202, overlap = 206.3  
steps = 76, shift = 20.3, angle = 0.049 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99934605 0.03615298 0.00055936 225.70436318  
0.02802141 -0.78416385 0.61992083 152.29427524  
0.02285061 -0.61949975 -0.78466414 174.09313002  
Axis -0.99981679 -0.01798192 -0.00655958  
Axis point 0.00000000 104.09195659 60.57300727  
Rotation angle (degrees) 141.69672788  
Shift along axis -229.54353499  
  
Average map value = 0.5204 for 10778 atoms, 7671 outside contour  

> view matrix models
> #13,0.56468,0.82272,0.06534,151.72,-0.81967,0.5683,-0.071966,90.24,-0.096341,-0.01292,0.99526,-272.35

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4592, correlation about mean = 0.202, overlap = 206.3  
steps = 52, shift = 1.2, angle = 2.26 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99934127 0.03628843 0.00022559 225.74786882  
0.02832103 -0.78378529 0.62038577 152.31127132  
0.02268963 -0.61997072 -0.78429675 174.05417559  
Axis -0.99981542 -0.01810762 -0.00642229  
Axis point 0.00000000 104.11348094 60.54621685  
Rotation angle (degrees) 141.66248450  
Shift along axis -229.58202060  
  
Average map value = 0.5204 for 10778 atoms, 7672 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4591, correlation about mean = 0.2019, overlap = 206.3  
steps = 36, shift = 0.0685, angle = 0.0539 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99934113 0.03629046 0.00043278 225.68206550  
0.02821511 -0.78435792 0.61966647 152.30305740  
0.02282743 -0.61924597 -0.78486511 174.11554794  
Axis -0.99981544 -0.01807272 -0.00651690  
Axis point 0.00000000 104.07634400 60.60451170  
Rotation angle (degrees) 141.71521749  
Shift along axis -229.52763588  
  
Average map value = 0.5204 for 10778 atoms, 7670 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4591, correlation about mean = 0.202, overlap = 206.3  
steps = 52, shift = 2.14, angle = 0.0248 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99934420 0.03620463 0.00052381 225.71455776  
0.02808192 -0.78410608 0.61999115 152.29675045  
0.02285726 -0.61956984 -0.78460860 174.08687586  
Axis -0.99981627 -0.01801392 -0.00655169  
Axis point 0.00000000 104.09306589 60.56787966  
Rotation angle (degrees) 141.69157698  
Shift along axis -229.55711192  
  
Average map value = 0.5204 for 10778 atoms, 7672 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4591, correlation about mean = 0.2019, overlap = 206.3  
steps = 44, shift = 0.0537, angle = 0.0254 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99933940 0.03633837 0.00039366 225.67229147  
0.02827668 -0.78434878 0.61967523 152.30875518  
0.02282675 -0.61925474 -0.78485821 174.12027029  
Axis -0.99981495 -0.01810347 -0.00650577  
Axis point 0.00000000 104.07765303 60.60788213  
Rotation angle (degrees) 141.71455601  
Shift along axis -229.52063590  
  
Average map value = 0.5204 for 10778 atoms, 7669 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4591, correlation about mean = 0.2019, overlap = 206.3  
steps = 40, shift = 0.00391, angle = 0.0184 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99934011 0.03631725 0.00053394 225.66809806  
0.02817982 -0.78453042 0.61944967 152.29888864  
0.02291560 -0.61902585 -0.78503616 174.13333989  
Axis -0.99981517 -0.01806860 -0.00656931  
Axis point 0.00000000 104.06241355 60.61961728  
Rotation angle (degrees) 141.73115307  
Shift along axis -229.52215074  
  
Average map value = 0.5204 for 10778 atoms, 7670 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4591, correlation about mean = 0.2019, overlap = 206.3  
steps = 40, shift = 0.00182, angle = 0.0123 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99933390 0.03648552 0.00066627 225.67315512  
0.02822999 -0.78452835 0.61945000 152.29876439  
0.02312365 -0.61901857 -0.78503580 174.13855728  
Axis -0.99981343 -0.01812981 -0.00666467  
Axis point 0.00000000 104.05237152 60.61408320  
Rotation angle (degrees) 141.73132777  
Shift along axis -229.55277377  
  
Average map value = 0.5204 for 10778 atoms, 7669 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4591, correlation about mean = 0.2019, overlap = 206.3  
steps = 92, shift = 18.8, angle = 0.0119 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99934044 0.03630748 0.00056766 225.67589855  
0.02815037 -0.78450702 0.61948064 152.29633231  
0.02293711 -0.61905608 -0.78501170 174.12878939  
Axis -0.99981526 -0.01805785 -0.00658487  
Axis point 0.00000000 104.06273787 60.61399074  
Rotation angle (degrees) 141.72892351  
Shift along axis -229.53096698  
  
Average map value = 0.5204 for 10778 atoms, 7669 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4591, correlation about mean = 0.202, overlap = 206.3  
steps = 100, shift = 22.3, angle = 0.0429 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99933967 0.03633131 0.00036512 225.71495933  
0.02827805 -0.78405596 0.62004562 152.30802937  
0.02281333 -0.61962586 -0.78456564 174.08512574  
Axis -0.99981500 -0.01810485 -0.00649508  
Axis point 0.00000000 104.09387610 60.57207437  
Rotation angle (degrees) 141.68748489  
Shift along axis -229.56141225  
  
Average map value = 0.5204 for 10778 atoms, 7669 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4591, correlation about mean = 0.202, overlap = 206.3  
steps = 56, shift = 1.02, angle = 0.0125 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99934059 0.03630518 0.00043476 225.71049554  
0.02821909 -0.78418543 0.61988456 152.30189784  
0.02284594 -0.61946353 -0.78469287 174.09470601  
Axis -0.99981527 -0.01807970 -0.00652327  
Axis point 0.00000000 104.08424781 60.58232121  
Rotation angle (degrees) 141.69930532  
Shift along axis -229.55803901  
  
Average map value = 0.5204 for 10778 atoms, 7669 outside contour  

> scalebar off

> scalebar 50

> movie record

> turn y 2 180

> wait 180

> movie encode /Users/francescappadoo/Desktop/movie14.mp4

Movie saved to /Users/francescappadoo/Desktop/movie14.mp4  
  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4591, correlation about mean = 0.2019, overlap = 206.3  
steps = 44, shift = 0.0329, angle = 0.0218 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99934213 0.03626278 0.00044796 225.67875121  
0.02818625 -0.78442053 0.61958853 152.30007496  
0.02281939 -0.61916829 -0.78492663 174.12001234  
Axis -0.99981572 -0.01805625 -0.00651867  
Axis point 0.00000000 104.07263774 60.61053136  
Rotation angle (degrees) 141.72091129  
Shift along axis -229.52216263  
  
Average map value = 0.5204 for 10778 atoms, 7670 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4591, correlation about mean = 0.202, overlap = 206.3  
steps = 44, shift = 0.0601, angle = 0.0402 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99934136 0.03628487 0.00036453 225.73565493  
0.02823938 -0.78398663 0.62013504 152.30285932  
0.02278730 -0.61971630 -0.78449497 174.07178380  
Axis -0.99981546 -0.01808171 -0.00648788  
Axis point 0.00000000 104.09718084 60.56144283  
Rotation angle (degrees) 141.68093746  
Shift along axis -229.57725079  
  
Average map value = 0.5204 for 10778 atoms, 7672 outside contour  

> view matrix models
> #13,0.50526,0.83445,0.22,149.94,-0.76052,0.55105,-0.34345,92.415,-0.40782,0.0062201,0.91304,-282.49

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4591, correlation about mean = 0.2019, overlap = 206.3  
steps = 40, shift = 0.0908, angle = 0.988 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99933828 0.03636829 0.00047986 225.67395774  
0.02824611 -0.78433158 0.61969839 152.30534568  
0.02291373 -0.61927477 -0.78483987 174.12294567  
Axis -0.99981464 -0.01810347 -0.00655436  
Axis point 0.00000000 104.07580288 60.60319318  
Rotation angle (degrees) 141.71296481  
Shift along axis -229.53064520  
  
Average map value = 0.5204 for 10778 atoms, 7669 outside contour  

> ui mousemode right "translate selected models"

> view matrix models
> #13,0.50211,0.83373,0.22974,149.89,-0.75405,0.55215,-0.35572,92.143,-0.42343,0.0053757,0.90591,-279.69

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2769_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5224, steps = 48  
shifted from previous position = 2.91  
rotated from previous position = 1.59 degrees  
atoms outside contour = 7718, contour level = 0.39813  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99976891 0.01424379 -0.01609736 225.34517496  
0.02116570 -0.78286239 0.62183475 152.73496254  
-0.00374474 -0.62203176 -0.78298299 173.30095979  
Axis -0.99993521 -0.00993018 0.00556448  
Axis point 0.00000000 105.69585518 61.02789320  
Rotation angle (degrees) 141.53960222  
Shift along axis -225.88293196  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2769_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5224, steps = 40  
shifted from previous position = 0.0223  
rotated from previous position = 0.0265 degrees  
atoms outside contour = 7718, contour level = 0.39813  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99976305 0.01414784 -0.01653940 225.32770914  
0.02136512 -0.78292170 0.62175325 152.73864345  
-0.00415260 -0.62195930 -0.78303850 173.30437622  
Axis -0.99993357 -0.00995887 0.00580263  
Axis point 0.00000000 105.69977066 61.06083200  
Rotation angle (degrees) 141.54516065  
Shift along axis -225.82822468  
  

> view matrix models
> #13,0.52431,0.82304,0.21843,150.89,-0.74755,0.56772,-0.34477,92.521,-0.40776,0.017477,0.91292,-277.74

> view matrix models
> #13,0.52431,0.82304,0.21843,150.25,-0.74755,0.56772,-0.34477,92.324,-0.40776,0.017477,0.91292,-278.75

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2769_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5224, steps = 64  
shifted from previous position = 3.13  
rotated from previous position = 0.0144 degrees  
atoms outside contour = 7718, contour level = 0.39813  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99976641 0.01417159 -0.01631428 225.32908177  
0.02124413 -0.78285658 0.62183940 152.73660214  
-0.00395929 -0.62204072 -0.78297482 173.30410211  
Axis -0.99993451 -0.00993197 0.00568550  
Axis point 0.00000000 105.70230647 61.04236777  
Rotation angle (degrees) 141.53907259  
Shift along axis -225.84598023  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2769_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5224, steps = 60  
shifted from previous position = 0.0538  
rotated from previous position = 0.03 degrees  
atoms outside contour = 7719, contour level = 0.39813  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99976546 0.01458885 -0.01600230 225.38684086  
0.02137695 -0.78282433 0.62187544 152.75010630  
-0.00345455 -0.62207166 -0.78295263 173.29127175  
Axis -0.99993424 -0.01008638 0.00545654  
Axis point 0.00000000 105.68233836 61.01243304  
Rotation angle (degrees) 141.53660974  
Shift along axis -225.96714530  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2769_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5224, steps = 44  
shifted from previous position = 0.00739  
rotated from previous position = 0.0153 degrees  
atoms outside contour = 7719, contour level = 0.39813  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99976640 0.01453934 -0.01598854 225.37866580  
0.02133053 -0.78266198 0.62208134 152.74857005  
-0.00346898 -0.62227707 -0.78278932 173.28321178  
Axis -0.99993450 -0.01006040 0.00545723  
Axis point 0.00000000 105.69598924 60.99660935  
Rotation angle (degrees) 141.52157011  
Shift along axis -225.95496942  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2769_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5224, steps = 40  
shifted from previous position = 0.0102  
rotated from previous position = 0.00501 degrees  
atoms outside contour = 7719, contour level = 0.39813  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99976688 0.01456001 -0.01593940 225.38598927  
0.02131589 -0.78270536 0.62202726 152.74644643  
-0.00341914 -0.62222202 -0.78283330 173.27985245  
Axis -0.99993464 -0.01006184 0.00542933  
Axis point 0.00000000 105.68963219 60.99520527  
Rotation angle (degrees) 141.52557024  
Shift along axis -225.96737471  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2769_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5224, steps = 40  
shifted from previous position = 0.00349  
rotated from previous position = 0.022 degrees  
atoms outside contour = 7718, contour level = 0.39813  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99977193 0.01461030 -0.01557269 225.38608629  
0.02112678 -0.78277048 0.62195177 152.74059387  
-0.00310295 -0.62213892 -0.78290066 173.29429485  
Axis -0.99993606 -0.01002254 0.00523761  
Axis point 0.00000000 105.68106779 60.98469768  
Rotation angle (degrees) 141.53143799  
Shift along axis -225.99487461  
  

> view matrix models
> #13,0.52371,0.82333,0.21875,147.93,-0.74748,0.56729,-0.34562,92.688,-0.40865,0.017494,0.91252,-280.42

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2769_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5224, steps = 68  
shifted from previous position = 2.38  
rotated from previous position = 0.0246 degrees  
atoms outside contour = 7719, contour level = 0.39813  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99976651 0.01455817 -0.01596461 225.38127882  
0.02133038 -0.78266223 0.62208104 152.74901310  
-0.00343854 -0.62227632 -0.78279005 173.28278244  
Axis -0.99993453 -0.01006563 0.00544198  
Axis point 0.00000000 105.69490185 60.99485332  
Rotation angle (degrees) 141.52161010  
Shift along axis -225.96103839  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2769_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5224, steps = 44  
shifted from previous position = 0.0024  
rotated from previous position = 0.011 degrees  
atoms outside contour = 7719, contour level = 0.39813  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99976566 0.01445057 -0.01611429 225.37764299  
0.02133910 -0.78269573 0.62203859 152.74773063  
-0.00362378 -0.62223668 -0.78282072 173.28116762  
Axis -0.99993430 -0.01003772 0.00553581  
Axis point 0.00000000 105.69826918 61.00589049  
Rotation angle (degrees) 141.52460344  
Shift along axis -225.93682227  
  

> view matrix models
> #13,0.52396,0.82328,0.21836,150.34,-0.74758,0.56736,-0.34529,92.752,-0.40816,0.017673,0.91274,-278.57

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2769_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5224, steps = 52  
shifted from previous position = 3.26  
rotated from previous position = 0.0129 degrees  
atoms outside contour = 7719, contour level = 0.39813  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99977013 0.01437754 -0.01590100 225.36878143  
0.02114921 -0.78269861 0.62204144 152.75016839  
-0.00350227 -0.62223475 -0.78282281 173.27249534  
Axis -0.99993555 -0.00996397 0.00544190  
Axis point 0.00000000 105.70256853 60.98765720  
Rotation angle (degrees) 141.52462669  
Shift along axis -225.93332162  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2769_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5224, steps = 48  
shifted from previous position = 0.058  
rotated from previous position = 0.0341 degrees  
atoms outside contour = 7718, contour level = 0.39813  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99976690 0.01411441 -0.01633408 225.32266539  
0.02121145 -0.78289188 0.62179606 152.73359078  
-0.00401154 -0.62199759 -0.78300882 173.30698697  
Axis -0.99993465 -0.00990657 0.00570559  
Axis point 0.00000000 105.70226182 61.04789548  
Rotation angle (degrees) 141.54224236  
Shift along axis -225.83218823  
  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4591, correlation about mean = 0.202, overlap = 206.3  
steps = 40, shift = 0.628, angle = 1.6 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99934087 0.03629771 0.00042913 225.71358306  
0.02821605 -0.78416758 0.61990727 152.30161403  
0.02283771 -0.61948656 -0.78467493 174.09213335  
Axis -0.99981534 -0.01807694 -0.00651945  
Axis point 0.00000000 104.08549729 60.58019604  
Rotation angle (degrees) 141.69763906  
Shift along axis -229.56003548  
  
Average map value = 0.5204 for 10778 atoms, 7669 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4591, correlation about mean = 0.202, overlap = 206.3  
steps = 44, shift = 0.024, angle = 0.0154 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99934083 0.03630044 0.00022393 225.73667387  
0.02834138 -0.78405540 0.62004343 152.31188379  
0.02268342 -0.61962837 -0.78456743 174.07013110  
Axis -0.99981532 -0.01811394 -0.00641911  
Axis point 0.00000000 104.09498244 60.57281782  
Rotation angle (degrees) 141.68748768  
Shift along axis -229.57132942  
  
Average map value = 0.5205 for 10778 atoms, 7673 outside contour  

> ui mousemode right "rotate selected models"

> view matrix models
> #13,0.022252,0.95882,0.28316,141.94,-0.76277,0.19937,-0.61516,83.752,-0.64628,-0.2023,0.7358,-293.03

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2769_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5176, steps = 212  
shifted from previous position = 15.5  
rotated from previous position = 43.8 degrees  
atoms outside contour = 7519, contour level = 0.39813  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.57138224 0.33587311 0.74880671 205.59828939  
-0.51449111 -0.56426264 0.64568301 136.57487571  
0.63939120 -0.75418621 -0.14960592 184.93604869  
Axis -0.85276673 0.06665330 -0.51802147  
Axis point 0.00000000 91.39193496 -17.15813926  
Rotation angle (degrees) 124.83696130  
Shift along axis -262.02505866  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2769_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5176, steps = 40  
shifted from previous position = 0.0553  
rotated from previous position = 0.0469 degrees  
atoms outside contour = 7520, contour level = 0.39813  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.57093420 0.33544835 0.74933867 205.51042290  
-0.51490952 -0.56459040 0.64506267 136.56829261  
0.63945462 -0.75412996 -0.14961841 184.94675313  
Axis -0.85263968 0.06696112 -0.51819088  
Axis point 0.00000000 91.42339668 -17.15574725  
Rotation angle (degrees) 124.86447981  
Shift along axis -261.91929539  
  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4664, correlation about mean = 0.2127, overlap = 203.9  
steps = 80, shift = 4.15, angle = 5.29 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.60489659 0.37471335 0.70263071 209.46033740  
-0.51165005 -0.49322824 0.70351979 140.82860635  
0.61017555 -0.78505778 -0.10662997 179.28307857  
Axis -0.85799455 0.05328981 -0.51088702  
Axis point -0.00000000 91.94449566 -25.00651606  
Rotation angle (degrees) 119.83347176  
Shift along axis -263.80449601  
  
Average map value = 0.5058 for 10778 atoms, 7502 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4664, correlation about mean = 0.2127, overlap = 203.9  
steps = 60, shift = 0.0287, angle = 0.0373 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.60530809 0.37484018 0.70220856 209.45257728  
-0.51145383 -0.49282313 0.70394625 140.84690209  
0.60993194 -0.78525163 -0.10659637 179.26638638  
Axis -0.85811106 0.05317197 -0.51070358  
Axis point -0.00000000 91.95667801 -24.99966694  
Rotation angle (degrees) 119.80539800  
Shift along axis -263.79645174  
  
Average map value = 0.5059 for 10778 atoms, 7505 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4664, correlation about mean = 0.2127, overlap = 203.9  
steps = 48, shift = 0.0528, angle = 0.0342 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.60509058 0.37531340 0.70214325 209.51691939  
-0.51117842 -0.49298365 0.70403389 140.84256643  
0.61037848 -0.78492476 -0.10644764 179.29058708  
Axis -0.85803817 0.05288104 -0.51085624  
Axis point 0.00000000 91.89424146 -25.00190151  
Rotation angle (degrees) 119.81296905  
Shift along axis -263.91732805  
  
Average map value = 0.5057 for 10778 atoms, 7500 outside contour  

> view matrix models
> #13,0.30284,0.90345,0.30343,146.27,-0.751,0.42224,-0.50766,90.004,-0.58676,-0.074139,0.80636,-287.86

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2769_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5224, steps = 96  
shifted from previous position = 1  
rotated from previous position = 16.3 degrees  
atoms outside contour = 7720, contour level = 0.39813  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99976672 0.01448907 -0.01601256 225.37547631  
0.02130605 -0.78268431 0.62205404 152.74671807  
-0.00351980 -0.62225014 -0.78281045 173.28427877  
Axis -0.99993460 -0.01003930 0.00547819  
Axis point 0.00000000 105.69675926 61.00043735  
Rotation angle (degrees) 141.52355783  
Shift along axis -225.94492184  
  

> view matrix models
> #13,0.39716,0.88423,0.24575,148.58,-0.78292,0.46616,-0.41199,89.34,-0.47885,-0.02878,0.87742,-284.63

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4591, correlation about mean = 0.2019, overlap = 206.3  
steps = 76, shift = 0.604, angle = 7.06 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99934261 0.03624853 0.00047611 225.67883327  
0.02815836 -0.78443999 0.61956511 152.29806193  
0.02283180 -0.61914445 -0.78494502 174.12065106  
Axis -0.99981587 -0.01804424 -0.00652992  
Axis point 0.00000000 104.07118381 60.61070932  
Rotation angle (degrees) 141.72264157  
Shift along axis -229.52237511  
  
Average map value = 0.5204 for 10778 atoms, 7670 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4591, correlation about mean = 0.202, overlap = 206.3  
steps = 44, shift = 0.0531, angle = 0.0384 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99934077 0.03630035 0.00037955 225.73070851  
0.02824375 -0.78402665 0.62008419 152.30350313  
0.02280685 -0.61966474 -0.78453507 174.07655727  
Axis -0.99981531 -0.01808685 -0.00649738  
Axis point 0.00000000 104.09427443 60.56555886  
Rotation angle (degrees) 141.68466927  
Shift along axis -229.57474985  
  
Average map value = 0.5204 for 10778 atoms, 7673 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4591, correlation about mean = 0.202, overlap = 206.3  
steps = 44, shift = 0.0239, angle = 0.00981 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99933718 0.03639959 0.00032961 225.72544173  
0.02835552 -0.78410334 0.61998212 152.31868989  
0.02282554 -0.61956188 -0.78461576 174.06446737  
Axis -0.99981431 -0.01814519 -0.00648833  
Axis point 0.00000000 104.08733857 60.56560921  
Rotation angle (degrees) 141.69210743  
Shift along axis -229.57676608  
  
Average map value = 0.5205 for 10778 atoms, 7673 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4591, correlation about mean = 0.2019, overlap = 206.3  
steps = 44, shift = 0.0496, angle = 0.0147 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99933810 0.03637262 0.00047529 225.68916864  
0.02824891 -0.78423722 0.61981763 152.30722463  
0.02291713 -0.61939399 -0.78474564 174.11041578  
Axis -0.99981458 -0.01810641 -0.00655433  
Axis point 0.00000000 104.08143261 60.59041074  
Rotation angle (degrees) 141.70425615  
Shift along axis -229.54623721  
  
Average map value = 0.5204 for 10778 atoms, 7669 outside contour  

> view matrix models
> #13,0.55509,0.80335,0.21565,150.07,-0.73398,0.59504,-0.32741,94.37,-0.39135,0.023456,0.91994,-281.59

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4591, correlation about mean = 0.2019, overlap = 206.3  
steps = 48, shift = 0.233, angle = 3.74 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99934045 0.03630856 0.00042885 225.67645892  
0.02823250 -0.78437629 0.61964238 152.30475152  
0.02283470 -0.61922163 -0.78488405 174.11935818  
Axis -0.99981525 -0.01808246 -0.00651772  
Axis point 0.00000000 104.07529586 60.60769314  
Rotation angle (degrees) 141.71697620  
Shift along axis -229.52367193  
  
Average map value = 0.5204 for 10778 atoms, 7668 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4591, correlation about mean = 0.202, overlap = 206.3  
steps = 44, shift = 0.0643, angle = 0.0342 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99934135 0.03628436 0.00037291 225.73517793  
0.02823462 -0.78400793 0.62010828 152.30223868  
0.02279259 -0.61968936 -0.78451604 174.07358927  
Axis -0.99981547 -0.01808001 -0.00649159  
Axis point 0.00000000 104.09557788 60.56338855  
Rotation angle (degrees) 141.68289786  
Shift along axis -229.57716250  
  
Average map value = 0.5204 for 10778 atoms, 7672 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4591, correlation about mean = 0.2019, overlap = 206.3  
steps = 40, shift = 0.0508, angle = 0.0309 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99933738 0.03639177 0.00051638 225.69117381  
0.02824167 -0.78432335 0.61970897 152.30355252  
0.02295731 -0.61928380 -0.78483142 174.11622379  
Axis -0.99981439 -0.01810888 -0.00657679  
Axis point 0.00000000 104.07267584 60.59730554  
Rotation angle (degrees) 141.71223661  
Shift along axis -229.55245552  
  
Average map value = 0.5204 for 10778 atoms, 7670 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4591, correlation about mean = 0.202, overlap = 206.3  
steps = 36, shift = 0.035, angle = 0.0292 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99934023 0.03631531 0.00035213 225.72218088  
0.02827250 -0.78402643 0.62008317 152.30712006  
0.02279459 -0.61966415 -0.78453590 174.08042203  
Axis -0.99981516 -0.01809910 -0.00648626  
Axis point 0.00000000 104.09586252 60.56864115  
Rotation angle (degrees) 141.68472157  
Shift along axis -229.56620978  
  
Average map value = 0.5204 for 10778 atoms, 7672 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4591, correlation about mean = 0.2019, overlap = 206.3  
steps = 28, shift = 0.0632, angle = 0.0393 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99933330 0.03650663 0.00022088 225.67267678  
0.02851864 -0.78441758 0.61957700 152.31904665  
0.02279192 -0.61915767 -0.78493575 174.12511914  
Axis -0.99981326 -0.01821765 -0.00644730  
Axis point 0.00000000 104.06716763 60.62475325  
Rotation angle (degrees) 141.72160707  
Shift along axis -229.52806584  
  
Average map value = 0.5204 for 10778 atoms, 7670 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4591, correlation about mean = 0.2019, overlap = 206.3  
steps = 48, shift = 0.00882, angle = 0.0205 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99934190 0.03626809 0.00048146 225.66456545  
0.02817145 -0.78446766 0.61952947 152.30043689  
0.02284684 -0.61910824 -0.78497314 174.13005580  
Axis -0.99981567 -0.01805311 -0.00653553  
Axis point 0.00000000 104.07072119 60.61661747  
Rotation angle (degrees) 141.72525501  
Shift along axis -229.51049649  
  
Average map value = 0.5204 for 10778 atoms, 7671 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4591, correlation about mean = 0.202, overlap = 206.3  
steps = 44, shift = 0.0584, angle = 0.0313 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99934096 0.03629433 0.00044126 225.71902419  
0.02820451 -0.78412923 0.61995627 152.30107705  
0.02284690 -0.61953529 -0.78463614 174.08757346  
Axis -0.99981537 -0.01807314 -0.00652552  
Axis point 0.00000000 104.08757922 60.57458872  
Rotation angle (degrees) 141.69407070  
Shift along axis -229.56592041  
  
Average map value = 0.5204 for 10778 atoms, 7671 outside contour  

> ui mousemode right "translate selected models"

> view matrix models
> #13,0.50218,0.83377,0.22945,151.33,-0.75402,0.55209,-0.35588,94.324,-0.4234,0.0057059,0.90592,-282.03

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4591, correlation about mean = 0.2019, overlap = 206.3  
steps = 44, shift = 2.37, angle = 0.0278 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99934152 0.03627862 0.00047019 225.67585839  
0.02818532 -0.78443013 0.61957636 152.30043623  
0.02284621 -0.61915518 -0.78493614 174.12273828  
Axis -0.99981556 -0.01806032 -0.00653233  
Axis point 0.00000000 104.07154710 60.61111908  
Rotation angle (degrees) 141.72182525  
Shift along axis -229.52225682  
  
Average map value = 0.5204 for 10778 atoms, 7670 outside contour  

> view matrix models
> #13,0.50219,0.83365,0.22986,154.15,-0.75401,0.55227,-0.35562,96.822,-0.42341,0.0052732,0.90592,-280.31

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2769_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5224, steps = 72  
shifted from previous position = 6.93  
rotated from previous position = 1.57 degrees  
atoms outside contour = 7719, contour level = 0.39813  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99976681 0.01453517 -0.01596528 225.38193172  
0.02131282 -0.78266691 0.62207570 152.74800703  
-0.00345352 -0.62227095 -0.78279420 173.28221415  
Axis -0.99993462 -0.01005422 0.00544640  
Axis point 0.00000000 105.69541522 60.99508453  
Rotation angle (degrees) 141.52200473  
Shift along axis -225.95919550  
  

> view matrix models
> #13,0.52385,0.82333,0.2184,153.39,-0.74758,0.56728,-0.34542,96.637,-0.4083,0.017677,0.91268,-280.87

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2769_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5224, steps = 56  
shifted from previous position = 5.31  
rotated from previous position = 0.00731 degrees  
atoms outside contour = 7719, contour level = 0.39813  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99976689 0.01444038 -0.01604588 225.38119838  
0.02128867 -0.78268496 0.62205383 152.74655959  
-0.00357618 -0.62225046 -0.78280994 173.27854584  
Axis -0.99993465 -0.01002077 0.00550335  
Axis point 0.00000000 105.69872944 60.99971643  
Rotation angle (degrees) 141.52355641  
Shift along axis -225.94349468  
  

> view matrix models
> #13,0.52395,0.82328,0.21838,152.75,-0.74755,0.56736,-0.34535,94.64,-0.40822,0.017693,0.91271,-279.15

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2769_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5224, steps = 56  
shifted from previous position = 4.35  
rotated from previous position = 0.00896 degrees  
atoms outside contour = 7718, contour level = 0.39813  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99976676 0.01455336 -0.01595177 225.38487219  
0.02131874 -0.78265144 0.62209496 152.74878708  
-0.00343111 -0.62228998 -0.78277917 173.28046094  
Axis -0.99993461 -0.01006107 0.00543637  
Axis point 0.00000000 105.69552054 60.99219669  
Rotation angle (degrees) 141.52060281  
Shift along axis -225.96493404  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2769_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5224, steps = 40  
shifted from previous position = 0.055  
rotated from previous position = 0.0369 degrees  
atoms outside contour = 7718, contour level = 0.39813  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99976775 0.01410209 -0.01629140 225.32716550  
0.02117561 -0.78284607 0.62185492 152.73458251  
-0.00398421 -0.62205552 -0.78296289 173.30603642  
Axis -0.99993489 -0.00989331 0.00568615  
Axis point 0.00000000 105.70694011 61.04142291  
Rotation angle (degrees) 141.53797941  
Shift along axis -225.83810140  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2769_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5224, steps = 40  
shifted from previous position = 0.00852  
rotated from previous position = 0.0144 degrees  
atoms outside contour = 7720, contour level = 0.39813  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99976778 0.01417892 -0.01622238 225.33253529  
0.02119371 -0.78270365 0.62203355 152.73556248  
-0.00387755 -0.62223296 -0.78282241 173.29345245  
Axis -0.99993490 -0.00992072 0.00563733  
Axis point 0.00000000 105.71134748 61.02098799  
Rotation angle (degrees) 141.52495015  
Shift along axis -225.85620003  
  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4591, correlation about mean = 0.2019, overlap = 206.3  
steps = 48, shift = 0.417, angle = 0.604 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99934054 0.03630649 0.00038852 225.67641663  
0.02825482 -0.78434715 0.61967825 152.30677591  
0.02280308 -0.61925867 -0.78485575 174.11706652  
Axis -0.99981528 -0.01808843 -0.00649766  
Axis point 0.00000000 104.07828430 60.60676269  
Rotation angle (degrees) 141.71431592  
Shift along axis -229.52107271  
  
Average map value = 0.5204 for 10778 atoms, 7668 outside contour  

> fitmap #13 inMap #10 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2769_004_volume_map.mrc using 2552 points  
correlation = 0.4591, correlation about mean = 0.202, overlap = 206.3  
steps = 44, shift = 0.0647, angle = 0.0309 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99934147 0.03628101 0.00037821 225.73473646  
0.02822891 -0.78401363 0.62010134 152.30186299  
0.02279443 -0.61968236 -0.78452152 174.07382534  
Axis -0.99981550 -0.01807741 -0.00649356  
Axis point 0.00000000 104.09521791 60.56361625  
Rotation angle (degrees) 141.68340860  
Shift along axis -229.57667180  
  
Average map value = 0.5204 for 10778 atoms, 7672 outside contour  

> view matrix models
> #13,0.50221,0.8338,0.22927,147.71,-0.75403,0.55203,-0.35594,91.356,-0.42335,0.005881,0.90595,-281.09

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2769_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5224, steps = 44  
shifted from previous position = 2.46  
rotated from previous position = 1.59 degrees  
atoms outside contour = 7717, contour level = 0.39813  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99976685 0.01423889 -0.01622743 225.33523951  
0.02124296 -0.78284223 0.62185746 152.73757684  
-0.00384896 -0.62205724 -0.78296220 173.30336558  
Axis -0.99993464 -0.00995057 0.00563030  
Axis point 0.00000000 105.69945478 61.03546731  
Rotation angle (degrees) 141.53781224  
Shift along axis -225.86458934  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2769_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5224, steps = 60  
shifted from previous position = 0.0521  
rotated from previous position = 0.0272 degrees  
atoms outside contour = 7718, contour level = 0.39813  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99976742 0.01452972 -0.01593178 225.38678563  
0.02128755 -0.78269680 0.62203897 152.74624765  
-0.00343170 -0.62223349 -0.78282408 173.28028546  
Axis -0.99993480 -0.01004544 0.00543080  
Axis point 0.00000000 105.69222363 60.99435736  
Rotation angle (degrees) 141.52472825  
Shift along axis -225.96544261  
  

> fitmap #13 inMap #10

Fit molecule Kendall_Fran_SHAPE_MaP.pdb (#13) to map
cryosparc_P12_J2769_004_volume_map.mrc (#10) using 10778 atoms  
average map value = 0.5224, steps = 48  
shifted from previous position = 0.00526  
rotated from previous position = 0.00731 degrees  
atoms outside contour = 7718, contour level = 0.39813  
  
Position of Kendall_Fran_SHAPE_MaP.pdb (#13) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99976672 0.01463801 -0.01587597 225.39421593  
0.02133772 -0.78267254 0.62206777 152.75109423  
-0.00331985 -0.62226146 -0.78280233 173.28137390  
Axis -0.99993460 -0.01009001 0.00538384  
Axis point 0.00000000 105.68973364 60.98903891  
Rotation angle (degrees) 141.52264134  
Shift along axis -225.98781645  
  

> open
> /Users/francescappadoo/Downloads/cryosparc_P12_J2780_class_00_final_volume.mrc

Opened cryosparc_P12_J2780_class_00_final_volume.mrc as #19, grid size
128,128,128, pixel 2.92, shown at level 0.0192, step 1, values float32  

> hide #13 models

> select add #13

10778 atoms, 11624 bonds, 336 residues, 1 model selected  

> select subtract #13

Nothing selected  

> hide #!10 models

> tile

2 models tiled  

> surface dust #19 size 29.2

> select add #19

2 models selected  

> volume #19 level 0.04245

> tile

2 models tiled  

> volume #19 level 0.1069

> open
> /Users/francescappadoo/Downloads/cryosparc_P12_J2780_class_00_final_volume.mrc

Opened cryosparc_P12_J2780_class_00_final_volume.mrc as #20, grid size
128,128,128, pixel 2.92, shown at level 0.0192, step 1, values float32  

> tile

3 models tiled  

> surface dust #19 size 29.2

> select subtract #19

Nothing selected  

> surface dust #19 size 29.2

> surface dust #20 size 29.2

> volume #20 level 0.1404

> tile

3 models tiled  

> close #20

> open
> /Users/francescappadoo/Downloads/cryosparc_P12_J2780_class_01_final_volume.mrc

Opened cryosparc_P12_J2780_class_01_final_volume.mrc as #20, grid size
128,128,128, pixel 2.92, shown at level 0.0186, step 1, values float32  

> tile

3 models tiled  

> surface dust #19 size 29.2

> surface dust #20 size 29.2

> volume #20 level 0.08281

> tile

3 models tiled  

> tile

3 models tiled  

> volume #19 level 0.1791

> scalebar off

> scalebar 50

> show #!3 models

> show #!10 models

> hide #!19 models

> hide #!20 models

> tile

3 models tiled  

> select add #10

2 models selected  

> view matrix models
> #10,0.53221,-0.49737,-0.68511,421.56,-0.73364,-0.67481,-0.080027,439.73,-0.42252,0.54522,-0.72403,181.1

> select subtract #10

Nothing selected  

> fitmap #3 inMap #10

Fit map cryosparc_P12_J2741_004_volume_map_sharp.mrc in map
cryosparc_P12_J2769_004_volume_map.mrc using 5172 points  
correlation = 0.629, correlation about mean = 0.2118, overlap = 2654  
steps = 172, shift = 47.7, angle = 65.6 degrees  
  
Position of cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99589877 -0.02448857 0.08709795 -10.71057302  
-0.06285098 -0.87972635 0.47130818 275.73846156  
0.06508068 -0.47484941 -0.87765748 435.26516359  
Axis -0.99890907 0.02324480 -0.04050124  
Axis point 0.00000000 192.60452361 183.09300743  
Rotation angle (degrees) 151.73206130  
Shift along axis -0.52040264  
  

> show #!8 models

> hide #!8 models

> select add #3

2 models selected  

> ui mousemode right "rotate selected models"

> view matrix models
> #3,0.70806,-0.48272,-0.51539,367.16,-0.62749,-0.76487,-0.14569,457.85,-0.32388,0.42656,-0.84448,212.79

> fitmap #3 inMap #10

Fit map cryosparc_P12_J2741_004_volume_map_sharp.mrc in map
cryosparc_P12_J2769_004_volume_map.mrc using 5172 points  
correlation = 0.7933, correlation about mean = 0.5952, overlap = 3659  
steps = 88, shift = 23.9, angle = 20.8 degrees  
  
Position of cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99830286 0.02697477 0.05161266 -12.57566365  
-0.03784317 0.97411570 0.22286007 -28.99204961  
-0.04426510 -0.22443501 0.97348324 62.52491046  
Axis -0.96811947 0.20751653 -0.14029108  
Axis point 0.00000000 258.32700219 157.66118636  
Rotation angle (degrees) 13.35667865  
Shift along axis -2.61327211  
  

> transparency sel 0

> transparency sel 50

> select subtract #3

Nothing selected  

> fitmap #3 inMap #10

Fit map cryosparc_P12_J2741_004_volume_map_sharp.mrc in map
cryosparc_P12_J2769_004_volume_map.mrc using 5172 points  
correlation = 0.7932, correlation about mean = 0.5943, overlap = 3658  
steps = 72, shift = 17, angle = 0.0796 degrees  
  
Position of cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99823335 0.02686502 0.05299584 -12.72855023  
-0.03804471 0.97412042 0.22280509 -28.95982523  
-0.04563866 -0.22442766 0.97342151 62.78692779  
Axis -0.96687014 0.21323740 -0.14032799  
Axis point 0.00000000 259.43131778 157.54802978  
Rotation angle (degrees) 13.37235923  
Shift along axis -2.67922579  
  

> fitmap #3 inMap #10

Fit map cryosparc_P12_J2741_004_volume_map_sharp.mrc in map
cryosparc_P12_J2769_004_volume_map.mrc using 5172 points  
correlation = 0.7933, correlation about mean = 0.5952, overlap = 3659  
steps = 92, shift = 17.8, angle = 0.0443 degrees  
  
Position of cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99827281 0.02690115 0.05222868 -12.66362966  
-0.03791113 0.97410706 0.22288628 -28.97842817  
-0.04488043 -0.22448135 0.97344438 62.65347358  
Axis -0.96759272 0.21003323 -0.14017977  
Axis point 0.00000000 258.82392834 157.61724474  
Rotation angle (degrees) 13.36629232  
Shift along axis -2.61594672  
  

> fitmap #3 inMap #10

Fit map cryosparc_P12_J2741_004_volume_map_sharp.mrc in map
cryosparc_P12_J2769_004_volume_map.mrc using 5172 points  
correlation = 0.7933, correlation about mean = 0.5947, overlap = 3658  
steps = 56, shift = 4.16, angle = 0.0641 degrees  
  
Position of cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99821525 0.02684882 0.05334381 -12.80164604  
-0.03810858 0.97411120 0.22283451 -28.94250190  
-0.04597996 -0.22446964 0.97339577 62.86231302  
Axis -0.96655816 0.21462399 -0.14036334  
Axis point 0.00000000 259.71750376 157.49360711  
Rotation angle (degrees) 13.37893089  
Shift along axis -2.66178400  
  

> fitmap #3 inMap #10

Fit map cryosparc_P12_J2741_004_volume_map_sharp.mrc in map
cryosparc_P12_J2769_004_volume_map.mrc using 5172 points  
correlation = 0.7933, correlation about mean = 0.5952, overlap = 3659  
steps = 40, shift = 0.0588, angle = 0.0789 degrees  
  
Position of cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99828667 0.02688990 0.05196878 -12.62077770  
-0.03783982 0.97411905 0.22284597 -28.98394877  
-0.04463146 -0.22443063 0.97346752 62.59016032  
Axis -0.96782764 0.20902587 -0.14006371  
Axis point 0.00000000 258.61760680 157.64978912  
Rotation angle (degrees) 13.36021844  
Shift along axis -2.61026745  
  

> fitmap #3 inMap #10

Fit map cryosparc_P12_J2741_004_volume_map_sharp.mrc in map
cryosparc_P12_J2769_004_volume_map.mrc using 5172 points  
correlation = 0.7932, correlation about mean = 0.5944, overlap = 3658  
steps = 28, shift = 0.0754, angle = 0.073 degrees  
  
Position of cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99822301 0.02677386 0.05323608 -12.75358994  
-0.03800948 0.97412339 0.22279811 -28.96396198  
-0.04589334 -0.22442565 0.97341000 62.83606113  
Axis -0.96668480 0.21427058 -0.14003074  
Axis point 0.00000000 259.64562487 157.58325438  
Rotation angle (degrees) 13.37469672  
Shift along axis -2.67640342  
  

> fitmap #3 inMap #10

Fit map cryosparc_P12_J2741_004_volume_map_sharp.mrc in map
cryosparc_P12_J2769_004_volume_map.mrc using 5172 points  
correlation = 0.7933, correlation about mean = 0.5952, overlap = 3659  
steps = 40, shift = 0.0789, angle = 0.0919 degrees  
  
Position of cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99830489 0.02685534 0.05163567 -12.55916741  
-0.03772855 0.97413646 0.22278875 -28.99982433  
-0.04431712 -0.22435922 0.97349835 62.51400939  
Axis -0.96813554 0.20775069 -0.13983282  
Axis point 0.00000000 258.37711663 157.73115504  
Rotation angle (degrees) 13.35197839  
Shift along axis -2.60726736  
  

> fitmap #3 inMap #10

Fit map cryosparc_P12_J2741_004_volume_map_sharp.mrc in map
cryosparc_P12_J2769_004_volume_map.mrc using 5172 points  
correlation = 0.7932, correlation about mean = 0.5944, overlap = 3658  
steps = 28, shift = 0.0955, angle = 0.141 degrees  
  
Position of cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99816869 0.02723761 0.05401379 -12.96076774  
-0.03865658 0.97400437 0.22320676 -28.90381563  
-0.04653005 -0.22488596 0.97327353 63.06858875  
Axis -0.96584674 0.21671841 -0.14203241  
Axis point 0.00000000 260.06220863 157.15644239  
Rotation angle (degrees) 13.41301299  
Shift along axis -2.70365749  
  

> select add #3

2 models selected  

> view matrix models
> #3,0.42977,-0.50886,-0.74589,452.6,-0.79107,-0.61046,-0.039326,423.66,-0.43533,0.60695,-0.6649,154.27

> fitmap #3 inMap #10

Fit map cryosparc_P12_J2741_004_volume_map_sharp.mrc in map
cryosparc_P12_J2769_004_volume_map.mrc using 5172 points  
correlation = 0.7932, correlation about mean = 0.5943, overlap = 3658  
steps = 100, shift = 5.83, angle = 31.9 degrees  
  
Position of cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99828402 0.02689801 0.05201558 -12.58053911  
-0.03785874 0.97411591 0.22285647 -29.00313077  
-0.04467481 -0.22444328 0.97346262 62.60371733  
Axis -0.96778341 0.20920055 -0.14010853  
Axis point -0.00000000 258.62257438 157.68059117  
Rotation angle (degrees) 13.36154439  
Shift along axis -2.66354883  
  

> view matrix models
> #3,0.91342,-0.26712,-0.30711,229.32,-0.39689,-0.75183,-0.52652,473.2,-0.090251,0.60282,-0.79276,115.8

> fitmap #3 inMap #10

Fit map cryosparc_P12_J2741_004_volume_map_sharp.mrc in map
cryosparc_P12_J2769_004_volume_map.mrc using 5172 points  
correlation = 0.7933, correlation about mean = 0.5947, overlap = 3658  
steps = 60, shift = 1.45, angle = 11.1 degrees  
  
Position of cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99829313 0.02677012 0.05190653 -12.55865704  
-0.03770307 0.97415362 0.22271799 -29.00513414  
-0.04460274 -0.22429486 0.97350013 62.55434816  
Axis -0.96790652 0.20896927 -0.13960230  
Axis point 0.00000000 258.61124820 157.76897369  
Rotation angle (degrees) 13.35108599  
Shift along axis -2.63830653  
  

> fitmap #3 inMap #10

Fit map cryosparc_P12_J2741_004_volume_map_sharp.mrc in map
cryosparc_P12_J2769_004_volume_map.mrc using 5172 points  
correlation = 0.7933, correlation about mean = 0.5947, overlap = 3658  
steps = 40, shift = 0.0248, angle = 0.0723 degrees  
  
Position of cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99822436 0.02690254 0.05314593 -12.77950248  
-0.03811842 0.97410137 0.22287576 -28.94772277  
-0.04577359 -0.22450583 0.97339715 62.83113242  
Axis -0.96673135 0.21375175 -0.14050154  
Axis point 0.00000000 259.53698329 157.48937596  
Rotation angle (degrees) 13.37884819  
Shift along axis -2.66115177  
  

> fitmap #3 inMap #10

Fit map cryosparc_P12_J2741_004_volume_map_sharp.mrc in map
cryosparc_P12_J2769_004_volume_map.mrc using 5172 points  
correlation = 0.7933, correlation about mean = 0.5951, overlap = 3659  
steps = 40, shift = 0.0519, angle = 0.0747 degrees  
  
Position of cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99829306 0.02689191 0.05184497 -12.59600948  
-0.03781366 0.97412136 0.22284031 -28.99253134  
-0.04451069 -0.22442036 0.97347542 62.56726776  
Axis -0.96793950 0.20852817 -0.14003261  
Axis point 0.00000000 258.52674727 157.68043880  
Rotation angle (degrees) 13.35816105  
Shift along axis -2.61504208  
  

> fitmap #3 inMap #10

Fit map cryosparc_P12_J2741_004_volume_map_sharp.mrc in map
cryosparc_P12_J2769_004_volume_map.mrc using 5172 points  
correlation = 0.7933, correlation about mean = 0.5951, overlap = 3659  
steps = 40, shift = 0.0122, angle = 0.0306 degrees  
  
Position of cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99826340 0.02710589 0.05230260 -12.70485172  
-0.03813243 0.97407418 0.22299218 -28.95597042  
-0.04490220 -0.22459934 0.97341616 62.68513659  
Axis -0.96745629 0.21010541 -0.14101076  
Axis point 0.00000000 258.80790379 157.46229209  
Rotation angle (degrees) 13.37502642  
Shift along axis -2.63169600  
  

> fitmap #3 inMap #10

Fit map cryosparc_P12_J2741_004_volume_map_sharp.mrc in map
cryosparc_P12_J2769_004_volume_map.mrc using 5172 points  
correlation = 0.7932, correlation about mean = 0.5944, overlap = 3658  
steps = 44, shift = 0.0443, angle = 0.0261 degrees  
  
Position of cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99824891 0.02691681 0.05267538 -12.69467955  
-0.03802385 0.97411780 0.22282013 -28.96357693  
-0.04531441 -0.22443285 0.97343546 62.72458042  
Axis -0.96715043 0.21189545 -0.14042924  
Axis point 0.00000000 259.16258366 157.55293580  
Rotation angle (degrees) 13.36902754  
Shift along axis -2.66795059  
  

> fitmap #3 inMap #10

Fit map cryosparc_P12_J2741_004_volume_map_sharp.mrc in map
cryosparc_P12_J2769_004_volume_map.mrc using 5172 points  
correlation = 0.7933, correlation about mean = 0.5952, overlap = 3659  
steps = 40, shift = 0.0495, angle = 0.0178 degrees  
  
Position of cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99826286 0.02695971 0.05238831 -12.69787697  
-0.03800608 0.97409400 0.22292717 -28.96657222  
-0.04502108 -0.22453097 0.97342644 62.69139938  
Axis -0.96742804 0.21060422 -0.14045946  
Axis point 0.00000000 258.92411117 157.54972372  
Rotation angle (degrees) 13.37136487  
Shift along axis -2.62180005  
  

> fitmap #3 inMap #10

Fit map cryosparc_P12_J2741_004_volume_map_sharp.mrc in map
cryosparc_P12_J2769_004_volume_map.mrc using 5172 points  
correlation = 0.7932, correlation about mean = 0.5946, overlap = 3658  
steps = 40, shift = 0.0286, angle = 0.0239 degrees  
  
Position of cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) relative to
cryosparc_P12_J2769_004_volume_map.mrc (#10) coordinates:  
Matrix rotation and translation  
0.99828478 0.02679976 0.05205168 -12.58279098  
-0.03776642 0.97414227 0.22275692 -29.00021233  
-0.04473591 -0.22434063 0.97348348 62.59091197  
Axis -0.96776890 0.20950241 -0.13975729  
Axis point 0.00000000 258.70777408 157.73022395  
Rotation angle (degrees) 13.35559658  
Shift along axis -2.64591682  
  

> select subtract #3

Nothing selected  

> hide #!3 models

> volume #10 level 0.3642

> show #!3 models

> tile

3 models tiled  

> select add #10

2 models selected  

> view matrix models
> #10,0.17173,-0.53467,-0.82743,603.12,-0.76886,-0.59786,0.22675,454.19,-0.61592,0.59724,-0.51376,269.41

> view matrix models
> #10,0.80994,-0.46574,-0.3565,375.55,-0.57785,-0.73774,-0.34904,557.53,-0.10044,0.4887,-0.86665,261.01

> select subtract #10

Nothing selected  

> scalebar off

> scalebar 50

> save /Users/francescappadoo/Desktop/image28.png supersample 3

> open /Users/francescappadoo/Downloads/cryosparc_P12_J2788_007_volume_map.mrc

Opened cryosparc_P12_J2788_007_volume_map.mrc as #23, grid size 128,128,128,
pixel 2.92, shown at level 0.04, step 1, values float32  

> hide #!10 models

> hide #!3 models

> tile

2 models tiled  

> surface dust #23 size 29.2

> volume #23 level 0.139

> tile

2 models tiled  

> scalebar off

> volume #23 level 0.2795

> tile

1 model tiled  

> show #13 models

> hide #!23 models

> tile

1 model tiled  

> scalebar 50

> save /Users/francescappadoo/Desktop/image29.png supersample 3

> select #13:77-79

97 atoms, 104 bonds, 3 residues, 1 model selected  

> select add #13

10778 atoms, 11624 bonds, 336 residues, 1 model selected  

> select subtract #13

Nothing selected  

> hide #13 models

> show #!23 models

> select #13:77-79

97 atoms, 104 bonds, 3 residues, 1 model selected  

> tile

2 models tiled  

> volume #23 level 0.1677

> show #!10 models

> tile

3 models tiled  

> close #23

> open /Users/francescappadoo/Downloads/cryosparc_P12_J2789_005_volume_map.mrc

Opened cryosparc_P12_J2789_005_volume_map.mrc as #9, grid size 128,128,128,
pixel 2.92, shown at level 0.0451, step 1, values float32  

> tile

3 models tiled  

> surface dust #10 size 29.6

> surface dust #9 size 29.2

> volume #9 level 0.15

> volume #9 level 0.1703

> tile

3 models tiled  

> tile

3 models tiled  

> hide #!9 models

> show #!9 models

> hide #!10 models

> show #!10 models

> select add #10

97 atoms, 104 bonds, 3 residues, 3 models selected  

> select subtract #10

97 atoms, 104 bonds, 3 residues, 1 model selected  

> select add #10

97 atoms, 104 bonds, 3 residues, 3 models selected  

> view matrix models
> #13,0.47718,-0.060922,0.87669,205.79,-0.69659,0.58198,0.41959,730.41,-0.53578,-0.81092,0.23527,131.66,#10,-0.96265,0.045825,0.26685,494.46,0.23396,-0.35528,0.90501,83.362,0.13628,0.93363,0.33129,-104.15

> select subtract #10

97 atoms, 104 bonds, 3 residues, 1 model selected  

> hide #!10 models

> close #9

> show #!8 models

> tile

2 models tiled  

> close #8

> show #!3 models

> tile

2 models tiled  

> show #!10 models

> tile

3 models tiled  

> tile

3 models tiled  

> select add #3

97 atoms, 104 bonds, 3 residues, 3 models selected  

> view matrix models
> #3,0.59496,-0.49578,-0.63263,397.02,-0.73219,-0.65899,-0.17214,448.19,-0.33155,0.56563,-0.75508,160.66,#13,0.32298,0.40572,0.85503,409.41,-0.93939,0.24722,0.23754,717.11,-0.115,-0.87993,0.46098,-47.96

> view matrix models
> #3,-0.86029,0.068494,0.50518,335.36,0.41374,-0.48515,0.77036,16.128,0.29785,0.87174,0.38903,-240.41,#13,-0.74052,-0.17747,-0.64818,470.5,0.22283,0.84509,-0.48596,192.19,0.63402,-0.5043,-0.58626,-498.75

> view matrix models
> #3,-0.68154,-0.020231,0.7315,275.04,0.64804,-0.48101,0.59048,6.8722,0.33991,0.87648,0.34094,-239.76,#13,-0.60135,0.044575,-0.79774,438.8,0.43162,0.85834,-0.2774,134.88,0.67237,-0.51113,-0.53541,-509.56

> select subtract #3

97 atoms, 104 bonds, 3 residues, 1 model selected  

> tile

3 models tiled  

> tile

3 models tiled  

> scalebar off

> scalebar 50

> tile

3 models tiled  

> tile

3 models tiled  

> scalebar off

> scalebar 50

> scalebar off

> scalebar 50

> scalebar off

> scalebar 50

> show #13 models

> hide #!10 models

> tile

3 models tiled  

> view matrix models
> #13,0.8253,0.078268,-0.55924,434,0.18252,-0.97416,0.13303,243.58,-0.53437,-0.21186,-0.81827,194.07

> view matrix models
> #13,0.54353,-0.39448,-0.74092,413.58,0.30588,-0.72891,0.61248,248.73,-0.78167,-0.55953,-0.27552,169.55

> fitmap #13 inMap #3 search 200 resolution 15

Found 74 unique fits from 200 random placements having fraction of points
inside contour >= 0.100 (200 of 200).  
  
Correlations and times found:  
0.592 (7), 0.5692 (6), 0.5649 (16), 0.5649 (4), 0.5619 (5), 0.5535 (8), 0.55
(7), 0.5485 (2), 0.5468 (3), 0.5423 (5), 0.542 (4), 0.54 (5), 0.5398 (2),
0.5375 (5), 0.5345 (3), 0.5331 (3), 0.5311 (3), 0.5286 (4), 0.5285 (1), 0.5275
(6), 0.5256 (7), 0.5253 (1), 0.522 (3), 0.5196 (10), 0.5192 (1), 0.519 (2),
0.5158 (1), 0.5152 (4), 0.5062 (1), 0.5048 (4), 0.5042 (2), 0.5028 (3), 0.5024
(1), 0.5008 (2), 0.4986 (1), 0.4984 (1), 0.4958 (4), 0.4942 (4), 0.4933 (1),
0.4917 (1), 0.4909 (1), 0.4905 (1), 0.4883 (2), 0.4866 (1), 0.4863 (4), 0.4857
(1), 0.4848 (1), 0.4836 (3), 0.4784 (1), 0.4758 (1), 0.4756 (2), 0.4752 (1),
0.4746 (1), 0.4725 (2), 0.4694 (1), 0.4684 (1), 0.4674 (1), 0.4648 (1), 0.4641
(1), 0.4619 (1), 0.4583 (1), 0.4578 (1), 0.4577 (2), 0.4573 (2), 0.4511 (1),
0.4484 (2), 0.4438 (2), 0.4436 (1), 0.4429 (1), 0.4328 (1), 0.4306 (2), 0.4286
(1), 0.406 (1), 0.4003 (1)  
  
Best fit found:  
Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.592, correlation about mean = 0.2329, overlap = 108.6  
steps = 204, shift = 32.7, angle = 47.8 degrees  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
-0.47960592 -0.27444890 -0.83346009 174.25692059  
0.64470982 0.53411772 -0.54687044 237.54792387  
0.59525392 -0.79962233 -0.07922605 186.57269817  
Axis -0.14715884 -0.83183510 0.53515853  
Axis point -20.10358580 0.00000000 222.97786351  
Rotation angle (degrees) 120.82096775  
Shift along axis -123.39817585  
  
Found 74 fits.  

> ui tool show "Fit in Map"

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.5941, correlation about mean = 0.2252, overlap = 108  
steps = 72, shift = 0.28, angle = 4.87 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
-0.54034387 -0.30350888 -0.78479974 170.92043165  
0.61337885 0.49639782 -0.61429258 236.33716207  
0.57601625 -0.81330891 -0.08205953 185.79488732  
Axis -0.12040363 -0.82328510 0.55471129  
Axis point -11.45272808 0.00000000 223.07032510  
Rotation angle (degrees) 124.26371937  
Shift along axis -112.08978055  
  
Average map value = 0.2652 for 10778 atoms, 6713 outside contour  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.5726, correlation about mean = 0.1853, overlap = 103.2  
steps = 72, shift = 3.42, angle = 7.52 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.41464719 0.07024538 0.90726682 190.77901155  
0.70263683 0.60883691 -0.36826472 233.19587650  
-0.57824654 0.79017912 0.20309547 200.88908328  
Axis 0.58297517 0.74756961 0.31824461  
Axis point 71.66359982 0.00000000 60.52075920  
Rotation angle (degrees) 83.49500727  
Shift along axis 349.48144510  
  
Average map value = 0.2523 for 10778 atoms, 7190 outside contour  

> select up

10778 atoms, 11624 bonds, 336 residues, 1 model selected  

> select up

40785 atoms, 43984 bonds, 1272 residues, 32 models selected  

> select down

10778 atoms, 11624 bonds, 336 residues, 1 model selected  

> select down

97 atoms, 104 bonds, 3 residues, 1 model selected  

> select #13:63-68

189 atoms, 203 bonds, 6 residues, 1 model selected  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.5726, correlation about mean = 0.1854, overlap = 103.2  
steps = 44, shift = 0.0608, angle = 0.0331 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.41429630 0.07067440 0.90739379 190.84242523  
0.70258930 0.60892225 -0.36821428 233.20728673  
-0.57855572 0.79007509 0.20261911 200.87202850  
Axis 0.58287267 0.74775731 0.31799128  
Axis point 71.73790452 0.00000000 60.48720535  
Rotation angle (degrees) 83.51639838  
Shift along axis 349.49484112  
  
Average map value = 0.2523 for 10778 atoms, 7184 outside contour  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.5352, correlation about mean = 0.1685, overlap = 91.02  
steps = 52, shift = 0.467, angle = 2.55 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.86608194 0.24549135 -0.43547212 220.48674420  
0.45015040 -0.76183665 0.46579977 150.20599311  
-0.21740891 -0.59944879 -0.77032102 140.17927581  
Axis -0.96277831 -0.19708689 0.18497212  
Axis point 0.00000000 80.76739228 74.39829778  
Rotation angle (degrees) 146.41207967  
Shift along axis -215.95422869  
  
Average map value = 0.2256 for 10778 atoms, 7440 outside contour  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.5352, correlation about mean = 0.1685, overlap = 91.03  
steps = 40, shift = 0.0166, angle = 0.0145 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.86606488 0.24556344 -0.43546540 220.48687253  
0.45014927 -0.76196713 0.46558738 150.19273047  
-0.21747919 -0.59925339 -0.77045321 140.19810311  
Axis -0.96277637 -0.19709235 0.18497639  
Axis point 0.00000000 80.75014489 74.41800438  
Rotation angle (degrees) 146.42656783  
Shift along axis -215.94805048  
  
Average map value = 0.2256 for 10778 atoms, 7443 outside contour  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.5211, correlation about mean = 0.1509, overlap = 94.72  
steps = 64, shift = 1.96, angle = 2.3 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.63176598 -0.36149646 0.68570542 179.19402635  
0.32674144 -0.67798478 -0.65846529 179.13110055  
0.70293072 0.64004446 -0.31021195 230.64494508  
Axis 0.88350441 -0.01172007 0.46827620  
Axis point 0.00000000 64.25947318 112.99215311  
Rotation angle (degrees) 132.70434242  
Shift along axis 264.22482127  
  
Average map value = 0.2316 for 10778 atoms, 7382 outside contour  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.521, correlation about mean = 0.1509, overlap = 94.72  
steps = 60, shift = 0.0534, angle = 0.0355 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.63175860 -0.36180387 0.68555007 179.23792860  
0.32618389 -0.67820339 -0.65851658 179.10871333  
0.70319625 0.63963902 -0.31044634 230.64423708  
Axis 0.88351895 -0.01200991 0.46824142  
Axis point 0.00000000 64.28542178 112.97784931  
Rotation angle (degrees) 132.72229287  
Shift along axis 264.20621182  
  
Average map value = 0.2315 for 10778 atoms, 7378 outside contour  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.5195, correlation about mean = 0.09215, overlap = 92.84  
steps = 64, shift = 4.82, angle = 4.71 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
-0.66626530 0.40411496 -0.62672286 194.48178422  
0.74365893 0.42242677 -0.51819581 224.46131093  
0.05533391 -0.81132406 -0.58197200 157.12309929  
Axis -0.35907491 -0.83550280 0.41593303  
Axis point 18.74513903 0.00000000 150.46241151  
Rotation angle (degrees) 155.90997987  
Shift along axis -192.01889527  
  
Average map value = 0.2252 for 10778 atoms, 7589 outside contour  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.5195, correlation about mean = 0.09217, overlap = 92.84  
steps = 60, shift = 0.00911, angle = 0.0107 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
-0.66625470 0.40408971 -0.62675040 194.48726392  
0.74365648 0.42257015 -0.51808242 224.46292130  
0.05549432 -0.81126197 -0.58204328 157.12372722  
Axis -0.35905641 -0.83554375 0.41586674  
Axis point 18.74688870 0.00000000 150.45495495  
Rotation angle (degrees) 155.90417635  
Shift along axis -192.03795705  
  
Average map value = 0.2252 for 10778 atoms, 7589 outside contour  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.5195, correlation about mean = 0.09205, overlap = 92.83  
steps = 60, shift = 7.22, angle = 0.0446 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
-0.66637610 0.40423116 -0.62653008 194.49966638  
0.74359989 0.42204213 -0.51859379 224.45710657  
0.05479040 -0.81146633 -0.58182505 157.12986486  
Axis -0.35910473 -0.83539893 0.41611588  
Axis point 18.76999302 0.00000000 150.48514217  
Rotation angle (degrees) 155.93445039  
Shift along axis -191.97274499  
  
Average map value = 0.2252 for 10778 atoms, 7589 outside contour  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.5168, correlation about mean = 0.1346, overlap = 85.1  
steps = 112, shift = 23.2, angle = 22.9 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
-0.56237319 0.55385770 -0.61398531 213.39878905  
0.78246990 0.59653088 -0.17858228 241.60561208  
0.26735210 -0.58085503 -0.76884996 194.15469014  
Axis -0.40412740 -0.88540074 0.22966621  
Axis point 13.50332438 0.00000000 144.98685533  
Rotation angle (degrees) 150.15169523  
Shift along axis -255.56731551  
  
Average map value = 0.2086 for 10778 atoms, 7585 outside contour  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.5169, correlation about mean = 0.1345, overlap = 85.12  
steps = 28, shift = 0.0439, angle = 0.0186 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
-0.56232470 0.55409952 -0.61381151 213.36487881  
0.78252248 0.59651760 -0.17839617 241.59215024  
0.26730021 -0.58063800 -0.76903191 194.15738848  
Axis -0.40420019 -0.88540152 0.22953507  
Axis point 13.49498689 0.00000000 144.95480518  
Rotation angle (degrees) 150.16014285  
Shift along axis -255.58225348  
  
Average map value = 0.2086 for 10778 atoms, 7584 outside contour  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.5195, correlation about mean = 0.09241, overlap = 92.85  
steps = 112, shift = 29.3, angle = 22.8 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
-0.66691220 0.40406223 -0.62606846 194.53006399  
0.74300944 0.42404778 -0.51780338 224.48438853  
0.05625823 -0.81050429 -0.58302469 157.13313330  
Axis -0.35862865 -0.83601347 0.41529143  
Axis point 18.88522122 0.00000000 150.34905200  
Rotation angle (degrees) 155.91549605  
Shift along axis -192.17998367  
  
Average map value = 0.2252 for 10778 atoms, 7583 outside contour  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.5195, correlation about mean = 0.09247, overlap = 92.86  
steps = 48, shift = 0.0801, angle = 0.0502 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
-0.66631651 0.40421993 -0.62660070 194.48732078  
0.74351443 0.42399351 -0.51712249 224.48561635  
0.05664349 -0.81045404 -0.58305724 157.10780676  
Axis -0.35890115 -0.83597254 0.41513838  
Axis point 18.78059752 0.00000000 150.32903723  
Rotation angle (degrees) 155.87979745  
Shift along axis -192.24405358  
  
Average map value = 0.2253 for 10778 atoms, 7589 outside contour  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.5195, correlation about mean = 0.09221, overlap = 92.83  
steps = 48, shift = 0.116, angle = 0.0977 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
-0.66670092 0.40407252 -0.62628681 194.52898247  
0.74326508 0.42288208 -0.51838947 224.45449074  
0.05537862 -0.81110798 -0.58226888 157.14014340  
Axis -0.35884562 -0.83565831 0.41581848  
Axis point 18.84075179 0.00000000 150.43820254  
Rotation angle (degrees) 155.92944170  
Shift along axis -192.03135785  
  
Average map value = 0.2252 for 10778 atoms, 7589 outside contour  

> ui tool show ViewDockX

No suitable models found for ViewDockX  

> open 6dbp fromDatabase pdb format mmcif

Summary of feedback from opening 6dbp fetched from pdb  
---  
note | Fetching compressed mmCIF 6dbp from http://files.rcsb.org/download/6dbp.cif  
  
6dbp title:  
RNA-recognition motif 1 of human MSI2 [more info...]  
  
Chain information for 6dbp #9  
---  
Chain | Description | UniProt  
A B | RNA-binding protein Musashi homolog 2 | MSI2H_HUMAN 2-84  
  

> hide #9 models

> show #9 models

> hide #9 models

> show #9 models

> hide #9 models

> show #9 models

> tile

4 models tiled  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.1129, correlation about mean = 0.1109, overlap = 0.0491  
steps = 2000, shift = 20.4, angle = 15.3 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
-0.67024222 0.51161026 -0.53761531 101.17265145  
0.71357088 0.24518835 -0.65627675 221.13328006  
-0.20394083 -0.82349112 -0.52940576 379.06371678  
Axis -0.39403240 -0.78628743 0.47591022  
Axis point -31.77225864 0.00000000 262.46131483  
Rotation angle (degrees) 167.74965653  
Shift along axis -33.33932414  
  
Average map value = 0.001199 for 1452 atoms, 10778 outside contour  

> select add #9

1657 atoms, 1566 bonds, 312 residues, 2 models selected  

> view matrix models
> #13,0.18396,-0.91697,0.354,390.71,-0.74452,-0.36513,-0.5589,242.61,0.64175,-0.16075,-0.74988,246.32,#9,0.91895,-0.24329,-0.31039,337.94,0.33791,0.89153,0.30163,120.19,0.20334,-0.38207,0.90149,360.76

Fit in map shortcut requires 1 displayed atomic model and 1 map or two maps,
got 2 atomic models, 1 maps.  

[Repeated 1 time(s)]

> select add #13

12246 atoms, 12987 bonds, 642 residues, 2 models selected  

> select subtract #13

1468 atoms, 1363 bonds, 306 residues, 1 model selected  

> view matrix models
> #9,0.38918,-0.78366,-0.48417,345.12,0.69265,0.59545,-0.40703,128.43,0.60727,-0.17695,0.77454,359.39

> fitmap #9 inMap #3

Fit molecule 6dbp (#9) to map cryosparc_P12_J2741_004_volume_map_sharp.mrc
(#3) using 1468 atoms  
average map value = 0, steps = 24  
shifted from previous position = 0  
rotated from previous position = 0 degrees  
atoms outside contour = 1468, contour level = 0.2754  
  
Position of 6dbp (#9) relative to cryosparc_P12_J2741_004_volume_map_sharp.mrc
(#3) coordinates:  
Matrix rotation and translation  
0.13079600 0.97109624 0.19966101 145.94459268  
0.39041028 -0.23556977 0.88999255 483.04799544  
0.91130250 -0.03845776 -0.40993754 285.58775589  
Axis -0.71090855 -0.54489940 -0.44462757  
Axis point 0.00000000 202.83167498 41.25380225  
Rotation angle (degrees) 139.23162849  
Shift along axis -493.94601259  
  

> hide #13 models

> ui mousemode right "translate selected models"

> tile

3 models tiled  

> view matrix models
> #9,0.42574,-0.78847,-0.4439,293.75,0.66819,0.60476,-0.43334,127.34,0.61013,-0.11212,0.78432,89.549

> view matrix models
> #9,0.42574,-0.78847,-0.4439,293.7,0.66819,0.60476,-0.43334,127.31,0.61013,-0.11212,0.78432,89.422

> view matrix models
> #9,0.42574,-0.78847,-0.4439,286.74,0.66819,0.60476,-0.43334,122.58,0.61013,-0.11212,0.78432,74.513

> fitmap #9 inMap #3

Fit molecule 6dbp (#9) to map cryosparc_P12_J2741_004_volume_map_sharp.mrc
(#3) using 1468 atoms  
average map value = 0.7617, steps = 128  
shifted from previous position = 41.6  
rotated from previous position = 74.2 degrees  
atoms outside contour = 164, contour level = 0.2754  
  
Position of 6dbp (#9) relative to cryosparc_P12_J2741_004_volume_map_sharp.mrc
(#3) coordinates:  
Matrix rotation and translation  
0.64380154 0.68130484 -0.34834365 185.84288696  
-0.24615308 0.61543737 0.74876268 171.65371919  
0.72451933 -0.39630871 0.56392480 160.15078034  
Axis -0.62821238 -0.58859720 -0.50882466  
Axis point 0.00000000 8.47122977 10.35692440  
Rotation angle (degrees) 65.69575701  
Shift along axis -299.27236819  
  

> fitmap #9 inMap #3

Fit molecule 6dbp (#9) to map cryosparc_P12_J2741_004_volume_map_sharp.mrc
(#3) using 1468 atoms  
average map value = 0.7617, steps = 60  
shifted from previous position = 0.0101  
rotated from previous position = 0.0402 degrees  
atoms outside contour = 164, contour level = 0.2754  
  
Position of 6dbp (#9) relative to cryosparc_P12_J2741_004_volume_map_sharp.mrc
(#3) coordinates:  
Matrix rotation and translation  
0.64359468 0.68173292 -0.34788811 185.83586302  
-0.24639929 0.61489454 0.74912758 171.64544050  
0.72461942 -0.39641515 0.56372135 160.15432738  
Axis -0.62832270 -0.58826337 -0.50907445  
Axis point 0.00000000 8.44273018 10.21769458  
Rotation angle (degrees) 65.72571445  
Shift along axis -299.26809210  
  

> fitmap #9 inMap #3

Fit molecule 6dbp (#9) to map cryosparc_P12_J2741_004_volume_map_sharp.mrc
(#3) using 1468 atoms  
average map value = 0.7617, steps = 60  
shifted from previous position = 0.00105  
rotated from previous position = 0.00433 degrees  
atoms outside contour = 164, contour level = 0.2754  
  
Position of 6dbp (#9) relative to cryosparc_P12_J2741_004_volume_map_sharp.mrc
(#3) coordinates:  
Matrix rotation and translation  
0.64357555 0.68177709 -0.34783694 185.83496325  
-0.24642439 0.61483568 0.74916764 171.64459708  
0.72462788 -0.39643047 0.56369970 160.15474850  
Axis -0.62833759 -0.58822544 -0.50909989  
Axis point 0.00000000 8.44105729 10.20252383  
Rotation angle (degrees) 65.72884564  
Shift along axis -299.26757746  
  

> fitmap #9 inMap #3 search 50 resolution 15

Opened 6dbp map 15 as #21, grid size 27,28,28, pixel 5, shown at level 0.0336,
step 1, values float32  
Found 12 unique fits from 50 random placements having fraction of points
inside contour >= 0.100 (50 of 50).  
  
Correlations and times found:  
0.9337 (4), 0.9331 (2), 0.9225 (7), 0.9184 (4), 0.9141 (2), 0.9126 (1), 0.8949
(3), 0.8928 (7), 0.8909 (2), 0.8907 (4), 0.8897 (7), 0.8894 (7)  
  
Best fit found:  
Fit map 6dbp map 15 in map cryosparc_P12_J2741_004_volume_map_sharp.mrc using
429 points  
correlation = 0.9337, correlation about mean = 0.7355, overlap = 41.29  
steps = 152, shift = 35.1, angle = 55.3 degrees  
Position of 6dbp map 15 (#21) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.36801039 -0.27987883 0.88669959 181.84914115  
0.18234355 0.95682960 0.22633602 175.92587655  
-0.91176709 0.07838995 0.40315729 220.46186980  
Axis -0.07942138 0.96546472 0.24813326  
Axis point 225.82310726 0.00000000 -62.95099516  
Rotation angle (degrees) 68.65402978  
Shift along axis 210.11144016  
  
Found 12 fits.  

> fitmap #9 inMap #3 resolution 15 metric correlation

Fit map 6dbp map 15 in map cryosparc_P12_J2741_004_volume_map_sharp.mrc using
429 points  
correlation = 0.9373, correlation about mean = 0.7523, overlap = 41.15  
steps = 88, shift = 1.76, angle = 11.3 degrees  
  
Position of 6dbp map 15 (#21) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.51203876 -0.15342060 0.84514994 181.16112656  
0.11335600 0.98738355 0.11056303 176.79516588  
-0.85144980 0.03919026 0.52296975 221.43569421  
Axis -0.04152167 0.98701018 0.15519937  
Axis point 263.70304588 0.00000000 -71.99239030  
Rotation angle (degrees) 59.25647047  
Shift along axis 201.34319798  
  
Average map value = 0.5722 for 1468 atoms, 114 outside contour  

> fitmap #9 inMap #3 resolution 15 metric correlation

Fit map 6dbp map 15 in map cryosparc_P12_J2741_004_volume_map_sharp.mrc using
429 points  
correlation = 0.9373, correlation about mean = 0.7524, overlap = 41.14  
steps = 28, shift = 0.0528, angle = 0.15 degrees  
  
Position of 6dbp map 15 (#21) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.51147653 -0.15099988 0.84592600 181.08967416  
0.11187432 0.98776209 0.10867487 176.79367643  
-0.85198353 0.03905276 0.52211009 221.46222490  
Axis -0.04048860 0.98741593 0.15287398  
Axis point 263.85841980 0.00000000 -71.31900326  
Rotation angle (degrees) 59.29124168  
Shift along axis 201.09263541  
  
Average map value = 0.5721 for 1468 atoms, 114 outside contour  

> fitmap #9 inMap #3 resolution 15 metric correlation

Fit map 6dbp map 15 in map cryosparc_P12_J2741_004_volume_map_sharp.mrc using
429 points  
correlation = 0.9373, correlation about mean = 0.7523, overlap = 41.15  
steps = 80, shift = 1.77, angle = 11.3 degrees  
  
Position of 6dbp map 15 (#21) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.51107357 -0.15171729 0.84604119 181.09661505  
0.11221643 0.98765159 0.10932446 176.80488794  
-0.85218033 0.03906689 0.52178775 221.45461183  
Axis -0.04084637 0.98731249 0.15344586  
Axis point 263.70012478 0.00000000 -71.37090494  
Rotation angle (degrees) 59.31908689  
Shift along axis 201.14582728  
  
Average map value = 0.5722 for 1468 atoms, 114 outside contour  

> show #!21 models

> hide #!21 models

> show #!21 models

> hide #!21 models

> select down

1468 atoms, 1363 bonds, 306 residues, 1 model selected  

> select down

1468 atoms, 1363 bonds, 306 residues, 1 model selected  

> select down

1468 atoms, 1363 bonds, 306 residues, 1 model selected  

> select down

1468 atoms, 1363 bonds, 306 residues, 1 model selected  

> select down

1468 atoms, 1363 bonds, 306 residues, 1 model selected  

> select down

1468 atoms, 1363 bonds, 306 residues, 1 model selected  

> select down

1468 atoms, 1363 bonds, 306 residues, 1 model selected  

> select down

1468 atoms, 1363 bonds, 306 residues, 1 model selected  

> fitmap #9 inMap #3 search 200 resolution 15

Found 12 unique fits from 200 random placements having fraction of points
inside contour >= 0.100 (200 of 200).  
  
Correlations and times found:  
0.9337 (16), 0.9331 (24), 0.9227 (21), 0.9182 (18), 0.9141 (6), 0.9127 (8),
0.8949 (17), 0.8929 (11), 0.8908 (8), 0.8906 (27), 0.8898 (25), 0.8891 (19)  
  
Best fit found:  
Fit map 6dbp map 15 in map cryosparc_P12_J2741_004_volume_map_sharp.mrc using
429 points  
correlation = 0.9337, correlation about mean = 0.7355, overlap = 41.29  
steps = 196, shift = 17.5, angle = 131 degrees  
Position of 6dbp map 15 (#21) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.36832144 -0.27961072 0.88665510 181.84804383  
0.18223994 0.95691378 0.22606364 175.92874039  
-0.91166222 0.07831986 0.40340809 220.46002799  
Axis -0.07932354 0.96551540 0.24796732  
Axis point 225.88068834 0.00000000 -62.96727407  
Rotation angle (degrees) 68.63415923  
Shift along axis 210.10395988  
  
Found 12 fits.  

> select down

1468 atoms, 1363 bonds, 306 residues, 1 model selected  

> select down

1468 atoms, 1363 bonds, 306 residues, 1 model selected  

> select down

1468 atoms, 1363 bonds, 306 residues, 1 model selected  

> select down

1468 atoms, 1363 bonds, 306 residues, 1 model selected  

> fitmap #9 inMap #3 search 200 resolution 15

Found 12 unique fits from 200 random placements having fraction of points
inside contour >= 0.100 (200 of 200).  
  
Correlations and times found:  
0.9337 (16), 0.9331 (24), 0.9227 (21), 0.9182 (17), 0.9141 (7), 0.9127 (8),
0.8949 (17), 0.8929 (11), 0.891 (8), 0.8907 (27), 0.8897 (25), 0.8891 (19)  
  
Best fit found:  
Fit map 6dbp map 15 in map cryosparc_P12_J2741_004_volume_map_sharp.mrc using
429 points  
correlation = 0.9337, correlation about mean = 0.7355, overlap = 41.29  
steps = 196, shift = 17.5, angle = 131 degrees  
Position of 6dbp map 15 (#21) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.36899961 -0.27864125 0.88667834 181.81540778  
0.18111945 0.95727107 0.22545069 175.94028776  
-0.91161134 0.07740348 0.40369997 220.46273490  
Axis -0.07950863 0.96577005 0.24691412  
Axis point 226.15264457 0.00000000 -62.93337024  
Rotation angle (degrees) 68.59332252  
Shift along axis 209.89732862  
  
Found 12 fits.  

> select down

1468 atoms, 1363 bonds, 306 residues, 1 model selected  

> select down

1468 atoms, 1363 bonds, 306 residues, 1 model selected  

> select down

1468 atoms, 1363 bonds, 306 residues, 1 model selected  

> show #13 models

> fitmap #13 #9 inMap #3 search 200 resolution 15

Opened map 15 as #22, grid size 44,50,42, pixel 5, shown at level 0.0347, step
1, values float32  
Found 85 unique fits from 200 random placements having fraction of points
inside contour >= 0.100 (200 of 200).  
  
Correlations and times found:  
0.5472 (15), 0.5452 (16), 0.5275 (6), 0.5205 (1), 0.5184 (1), 0.5157 (4),
0.515 (4), 0.5144 (3), 0.5097 (2), 0.5094 (3), 0.5082 (2), 0.5072 (5), 0.507
(2), 0.507 (1), 0.5065 (2), 0.5055 (2), 0.5046 (12), 0.5041 (5), 0.5038 (6),
0.5031 (5), 0.5023 (2), 0.501 (4), 0.5 (1), 0.4991 (7), 0.4954 (1), 0.4942
(3), 0.4883 (2), 0.4865 (1), 0.485 (1), 0.4847 (1), 0.4844 (1), 0.4837 (1),
0.4824 (1), 0.4822 (1), 0.4801 (1), 0.4797 (2), 0.4797 (1), 0.478 (1), 0.4779
(1), 0.4769 (8), 0.4769 (5), 0.4755 (1), 0.4721 (1), 0.4704 (1), 0.4703 (1),
0.468 (1), 0.4672 (2), 0.4525 (2), 0.4521 (2), 0.4493 (1), 0.4488 (1), 0.4488
(1), 0.4484 (1), 0.448 (1), 0.4449 (1), 0.4441 (3), 0.4437 (1), 0.4435 (1),
0.4408 (1), 0.4406 (1), 0.4403 (1), 0.4363 (1), 0.436 (2), 0.4316 (3), 0.431
(2), 0.4305 (1), 0.4295 (2), 0.4292 (1), 0.4245 (1), 0.4236 (1), 0.4212 (1),
0.4187 (1), 0.4167 (2), 0.4144 (1), 0.4122 (1), 0.4111 (1), 0.4044 (1), 0.4014
(1), 0.4011 (1), 0.3885 (1), 0.3839 (1), 0.3738 (2), 0.3687 (1), 0.3599 (2),
0.3419 (1)  
  
Best fit found:  
Fit map map 15 in map cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2970
points  
correlation = 0.5472, correlation about mean = 0.1921, overlap = 109.4  
steps = 344, shift = 43.9, angle = 90.3 degrees  
Position of map 15 (#22) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
-0.51757609 -0.28183139 -0.80788974 171.87147517  
0.60661002 0.54503293 -0.57875997 236.97956803  
0.60343935 -0.78962642 -0.11113424 187.76201676  
Axis -0.12544370 -0.83959468 0.52853065  
Axis point -13.53163529 0.00000000 219.32671802  
Rotation angle (degrees) 122.80889827  
Shift along axis -121.28899770  
  
Found 85 fits.  

> select #13:63-68

189 atoms, 203 bonds, 6 residues, 1 model selected  

> fitmap #9 inMap #3 resolution 15 metric correlation

Fit map 6dbp map 15 in map cryosparc_P12_J2741_004_volume_map_sharp.mrc using
429 points  
correlation = -0.119, correlation about mean = 0.3136, overlap = -0.4336  
steps = 92, shift = 23.8, angle = 29.3 degrees  
  
Position of 6dbp map 15 (#21) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
-0.78502341 0.17604170 0.59392569 256.94822942  
0.12975391 -0.89077313 0.43553104 156.17108955  
0.60572461 0.41896618 0.67643553 200.88744645  
Axis -0.32763715 -0.23337130 -0.91552812  
Axis point 93.11615534 51.39700887 0.00000000  
Rotation angle (degrees) 178.55144959  
Shift along axis -304.54974235  
  
Average map value = -0.001517 for 1468 atoms, 1468 outside contour  

> fitmap #9 inMap #3 resolution 15 metric correlation

Fit map 6dbp map 15 in map cryosparc_P12_J2741_004_volume_map_sharp.mrc using
429 points  
correlation = -0.119, correlation about mean = 0.3132, overlap = -0.4336  
steps = 24, shift = 0.0469, angle = 0.0534 degrees  
  
Position of 6dbp map 15 (#21) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
-0.78456117 0.17671968 0.59433499 256.98420008  
0.12936611 -0.89077825 0.43563593 156.15965104  
0.60640606 0.41866977 0.67600836 200.89172355  
Axis -0.32797953 -0.23335066 -0.91541078  
Axis point 93.10472756 51.36510503 0.00000000  
Rotation angle (degrees) 178.51789928  
Shift along axis -304.62396382  
  
Average map value = -0.001519 for 1468 atoms, 1468 outside contour  

> select down

189 atoms, 203 bonds, 6 residues, 1 model selected  

> select down

189 atoms, 203 bonds, 6 residues, 1 model selected  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.545, correlation about mean = 0.1442, overlap = 95.77  
steps = 192, shift = 55, angle = 59.8 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
-0.81219708 0.22750499 -0.53719377 181.24170091  
0.57965563 0.21078863 -0.78712596 215.60956370  
-0.06584075 -0.95068895 -0.30307652 141.64502301  
Axis -0.26783512 -0.77184269 0.57664826  
Axis point 31.07330223 0.00000000 166.11067555  
Rotation angle (degrees) 162.22121786  
Shift along axis -133.28020007  
  
Average map value = 0.235 for 10778 atoms, 7382 outside contour  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.5941, correlation about mean = 0.2252, overlap = 108  
steps = 164, shift = 25.3, angle = 41.6 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
-0.54061853 -0.30353447 -0.78460069 170.90251462  
0.61305907 0.49652565 -0.61450844 236.32593319  
0.57609889 -0.81322134 -0.08234644 185.80543853  
Axis -0.12024155 -0.82336188 0.55463248  
Axis point -11.40167211 0.00000000 223.03286812  
Rotation angle (degrees) 124.27875513  
Shift along axis -112.07761644  
  
Average map value = 0.2652 for 10778 atoms, 6713 outside contour  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.5941, correlation about mean = 0.2251, overlap = 108  
steps = 48, shift = 0.202, angle = 0.0542 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
-0.54125410 -0.30360169 -0.78413636 170.82050410  
0.61237692 0.49673266 -0.61502109 236.35280657  
0.57622760 -0.81306981 -0.08293995 185.82962380  
Axis -0.11989023 -0.82350618 0.55449428  
Axis point -11.32022944 0.00000000 222.95993948  
Rotation angle (degrees) 124.31419778  
Shift along axis -112.07624075  
  
Average map value = 0.2652 for 10778 atoms, 6715 outside contour  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.5941, correlation about mean = 0.2252, overlap = 108  
steps = 44, shift = 0.0516, angle = 0.0525 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
-0.54069108 -0.30371088 -0.78448243 170.88374999  
0.61300996 0.49637657 -0.61467786 236.33741075  
0.57608307 -0.81324649 -0.08220861 185.80001490  
Axis -0.12015841 -0.82330920 0.55472868  
Axis point -11.39687762 0.00000000 223.05134621  
Rotation angle (degrees) 124.28166082  
Shift along axis -112.04328719  
  
Average map value = 0.2652 for 10778 atoms, 6713 outside contour  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.5941, correlation about mean = 0.2251, overlap = 108  
steps = 48, shift = 0.0526, angle = 0.0343 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
-0.54098771 -0.30360908 -0.78431731 170.82809495  
0.61260671 0.49669737 -0.61482072 236.35640441  
0.57623352 -0.81308861 -0.08271424 185.82265944  
Axis -0.12000026 -0.82346392 0.55453323  
Axis point -11.36489874 0.00000000 222.98495051  
Rotation angle (degrees) 124.29835495  
Shift along axis -112.08554809  
  
Average map value = 0.2652 for 10778 atoms, 6714 outside contour  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.5941, correlation about mean = 0.2251, overlap = 108  
steps = 64, shift = 7.48, angle = 0.00612 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
-0.54091890 -0.30358595 -0.78437372 170.83371769  
0.61268591 0.49667985 -0.61475595 236.35941235  
0.57621391 -0.81310795 -0.08266071 185.82330700  
Axis -0.12004597 -0.82345057 0.55454317  
Axis point -11.37810726 0.00000000 222.99364521  
Rotation angle (degrees) 124.29472036  
Shift along axis -112.09114577  
  
Average map value = 0.2652 for 10778 atoms, 6715 outside contour  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.5941, correlation about mean = 0.2252, overlap = 108  
steps = 40, shift = 0.0627, angle = 0.0411 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
-0.54047019 -0.30358465 -0.78468347 170.90667371  
0.61320663 0.49644204 -0.61442876 236.33725744  
0.57608103 -0.81325365 -0.08215203 185.79897769  
Axis -0.12029646 -0.82331318 0.55469286  
Axis point -11.42924476 0.00000000 223.05876219  
Rotation angle (degrees) 124.26977158  
Shift along axis -112.07768066  
  
Average map value = 0.2652 for 10778 atoms, 6713 outside contour  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.5941, correlation about mean = 0.2251, overlap = 108  
steps = 72, shift = 0.83, angle = 3.47 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
-0.54085816 -0.30357220 -0.78442093 170.84233630  
0.61275109 0.49666581 -0.61470232 236.35661942  
0.57620162 -0.81312166 -0.08261160 185.82080888  
Axis -0.12008198 -0.82343913 0.55455236  
Axis point -11.38555155 0.00000000 222.99952583  
Rotation angle (degrees) 124.29139752  
Shift along axis -112.09300480  
  
Average map value = 0.2652 for 10778 atoms, 6716 outside contour  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.5941, correlation about mean = 0.2252, overlap = 108  
steps = 48, shift = 0.00553, angle = 0.0169 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
-0.54067522 -0.30344260 -0.78459717 170.85905014  
0.61294766 0.49669219 -0.61448499 236.35903655  
0.57616424 -0.81315392 -0.08255476 185.81972562  
Axis -0.12021982 -0.82343273 0.55453199  
Axis point -11.41775492 0.00000000 223.00696212  
Rotation angle (degrees) 124.28216904  
Shift along axis -112.12342886  
  
Average map value = 0.2652 for 10778 atoms, 6718 outside contour  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.5627, correlation about mean = 0.1485, overlap = 88.73  
steps = 940, shift = 24.3, angle = 76.2 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
-0.04858265 0.71067080 -0.70184504 236.74996735  
-0.97287130 -0.19279360 -0.12787452 153.21829828  
-0.22618798 0.67659248 0.70075774 232.50498101  
Axis 0.41778624 -0.24702440 -0.87431893  
Axis point 225.10689483 -84.60296619 0.00000000  
Rotation angle (degrees) 105.68267187  
Shift along axis -142.22128579  
  
Average map value = 0.2142 for 10778 atoms, 7609 outside contour  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.5627, correlation about mean = 0.1485, overlap = 88.73  
steps = 68, shift = 0.0198, angle = 0.0305 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
-0.04811130 0.71077353 -0.70177348 236.77400208  
-0.97294270 -0.19230395 -0.12806840 153.25162511  
-0.22598150 0.67662391 0.70079400 232.50236943  
Axis 0.41784256 -0.24705858 -0.87428237  
Axis point 225.17233922 -84.67643312 0.00000000  
Rotation angle (degrees) 105.65299991  
Shift along axis -142.20059555  
  
Average map value = 0.2142 for 10778 atoms, 7613 outside contour  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.5549, correlation about mean = 0.1738, overlap = 91.66  
steps = 124, shift = 15.9, angle = 11.9 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.83954253 0.38020665 0.38808628 220.73760317  
0.05881172 0.64652368 -0.76062352 226.76197023  
-0.54010115 0.66139991 0.52042355 194.94043847  
Axis 0.82279339 0.53705619 -0.18596151  
Axis point 0.00000000 -217.25199808 210.45721219  
Rotation angle (degrees) 59.78508263  
Shift along axis 267.15394199  
  
Average map value = 0.2215 for 10778 atoms, 7536 outside contour  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.5548, correlation about mean = 0.1737, overlap = 91.64  
steps = 48, shift = 0.0739, angle = 0.24 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.83926664 0.38250182 0.38642408 220.89497610  
0.05486105 0.64750471 -0.76008405 226.67241394  
-0.54094500 0.65911291 0.52244469 194.77565157  
Axis 0.82191439 0.53707696 -0.18975003  
Axis point 0.00000000 -218.91230479 211.54715716  
Rotation angle (degrees) 59.69466020  
Shift along axis 266.33860495  
  
Average map value = 0.2214 for 10778 atoms, 7530 outside contour  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.5551, correlation about mean = 0.1284, overlap = 95.65  
steps = 452, shift = 11.7, angle = 61 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.67765978 -0.45950656 0.57413471 175.39322001  
-0.71189064 -0.60565189 0.35552394 130.47178956  
0.18436020 -0.64964550 -0.73754449 170.45803018  
Axis -0.90781270 0.35202250 -0.22793915  
Axis point 0.00000000 121.83148707 32.59195722  
Rotation angle (degrees) 146.38417197  
Shift along axis -152.14924709  
  
Average map value = 0.2318 for 10778 atoms, 7515 outside contour  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.5536, correlation about mean = 0.1407, overlap = 96.76  
steps = 112, shift = 28.9, angle = 14.2 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.50580435 -0.63423788 0.58472558 160.40890420  
-0.85448309 -0.46139754 0.23868543 142.14103663  
0.11840761 -0.62036635 -0.77532256 176.92191540  
Axis -0.85736855 0.46540427 -0.21981366  
Axis point 0.00000000 138.52068224 37.59896282  
Rotation angle (degrees) 149.93503363  
Shift along axis -110.26635758  
  
Average map value = 0.2366 for 10778 atoms, 7344 outside contour  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.5566, correlation about mean = 0.1936, overlap = 88.08  
steps = 156, shift = 23.5, angle = 46.5 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.15983713 -0.05412089 0.98565857 175.04370798  
-0.93632050 -0.32456693 0.13401489 151.14921595  
0.31265918 -0.94431299 -0.10255241 172.75853881  
Axis -0.69693004 0.43496371 -0.57017111  
Axis point 0.00000000 158.91505020 -59.44516805  
Rotation angle (degrees) 129.31927320  
Shift along axis -154.75072323  
  
Average map value = 0.216 for 10778 atoms, 7279 outside contour  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.5566, correlation about mean = 0.1935, overlap = 88.13  
steps = 80, shift = 10.5, angle = 0.0526 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.16065197 -0.05449927 0.98550523 175.11591638  
-0.93618033 -0.32470639 0.13465474 151.12016539  
0.31266127 -0.94424328 -0.10318592 172.75945001  
Axis -0.69728307 0.43485362 -0.56982335  
Axis point 0.00000000 158.87077592 -59.35576831  
Rotation angle (degrees) 129.31772298  
Shift along axis -154.83258256  
  
Average map value = 0.2161 for 10778 atoms, 7276 outside contour  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.5566, correlation about mean = 0.1936, overlap = 88.1  
steps = 44, shift = 0.0462, angle = 0.0481 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.15990795 -0.05413787 0.98564615 175.06204028  
-0.93626956 -0.32469397 0.13406302 151.12797214  
0.31277548 -0.94426834 -0.10260884 172.76396614  
Axis -0.69697386 0.43490645 -0.57016122  
Axis point 0.00000000 158.88968511 -59.42820154  
Rotation angle (degrees) 129.32344496  
Shift along axis -154.79045014  
  
Average map value = 0.2161 for 10778 atoms, 7275 outside contour  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.4612, correlation about mean = 0.1711, overlap = 74  
steps = 64, shift = 0.619, angle = 2.48 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.77940594 0.51145874 0.36185105 226.67145904  
0.52488743 -0.84840273 0.06859896 171.46522192  
0.34208095 0.13646460 -0.92970849 199.93235150  
Axis 0.94322160 0.27477209 0.18663686  
Axis point 0.00000000 51.34040111 78.39411491  
Rotation angle (degrees) 177.93831356  
Shift along axis 298.23001919  
  
Average map value = 0.1776 for 10778 atoms, 8271 outside contour  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.521, correlation about mean = 0.1509, overlap = 94.72  
steps = 124, shift = 16, angle = 37.1 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.63178507 -0.36181350 0.68552061 179.22106413  
0.32607943 -0.67826601 -0.65850380 179.10169461  
0.70322091 0.63956706 -0.31053843 230.64343919  
Axis 0.88353261 -0.01204772 0.46821468  
Axis point 0.00000000 64.28464177 112.97995799  
Rotation angle (degrees) 132.72729755  
Shift along axis 264.18053174  
  
Average map value = 0.2316 for 10778 atoms, 7380 outside contour  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.5211, correlation about mean = 0.1509, overlap = 94.73  
steps = 44, shift = 0.0383, angle = 0.0341 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.63192433 -0.36139246 0.68561434 179.20116900  
0.32654066 -0.67812898 -0.65841637 179.11799776  
0.70288167 0.63995030 -0.31051690 230.64050834  
Axis 0.88356855 -0.01175082 0.46815440  
Axis point 0.00000000 64.25613133 112.98711579  
Rotation angle (degrees) 132.71568371  
Shift along axis 264.20710119  
  
Average map value = 0.2316 for 10778 atoms, 7382 outside contour  

> hide #!3 models

> select #13:63-68

189 atoms, 203 bonds, 6 residues, 1 model selected  

> tile

3 models tiled  

> tile

3 models tiled  

Fit in map shortcut requires 1 displayed atomic model and 1 map or two maps,
got 2 atomic models, 0 maps.  

> select add #9

1657 atoms, 1566 bonds, 312 residues, 2 models selected  

> select add #13

12246 atoms, 12987 bonds, 642 residues, 2 models selected  

> select subtract #13

1468 atoms, 1363 bonds, 306 residues, 1 model selected  

> view matrix models
> #9,0.8309,0.056325,-0.55356,306.28,-0.10414,-0.96154,-0.25415,188.9,-0.54659,0.26882,-0.79308,95.61

> ui mousemode right "translate selected models"

Fit in map shortcut requires 1 displayed atomic model and 1 map or two maps,
got 2 atomic models, 0 maps.  

[Repeated 3 time(s)]

> ui tool show "Scale Bar"

> scalebar off

> scalebar 50

> view matrix models
> #9,-0.066751,-0.11539,0.99107,265.41,-0.95389,0.29872,-0.029466,140.4,-0.29265,-0.94734,-0.13001,77.32

Fit in map shortcut requires 1 displayed atomic model and 1 map or two maps,
got 2 atomic models, 0 maps.  

> view matrix models
> #9,-0.68589,-0.0065446,-0.72767,314.58,0.47051,0.75884,-0.45032,180.77,0.55513,-0.65125,-0.5174,96.643

> ui tool show ViewDockX

No suitable models found for ViewDockX  

> ui tool show ViewDockX

No suitable models found for ViewDockX  

> view matrix models
> #9,-0.99583,0.04987,0.076444,302.79,-0.033725,0.57722,-0.81589,181.82,-0.084814,-0.81507,-0.57313,94.141

> view matrix models
> #9,-0.87843,0.089993,0.46932,287.87,-0.35715,0.52887,-0.76989,165.36,-0.3175,-0.84392,-0.43244,94.64

> view matrix models
> #9,-0.17833,0.2497,0.95176,262.25,-0.83274,0.47695,-0.28117,145.39,-0.52415,-0.84271,0.12288,61.077

> tile

3 models tiled  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.4618, correlation about mean = 0.1224, overlap = 66.79  
steps = 208, shift = 18.3, angle = 35.5 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.61509516 -0.66490325 0.42374680 168.37858463  
-0.33965771 0.26155925 0.90344850 171.05193985  
-0.71154086 -0.69963573 -0.06495565 170.75086764  
Axis -0.80511857 0.57017664 0.16334838  
Axis point 0.00000000 242.56978737 2.53268969  
Rotation angle (degrees) 95.40243551  
Shift along axis -10.14302662  
  
Average map value = 0.165 for 10778 atoms, 8236 outside contour  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.4618, correlation about mean = 0.1224, overlap = 66.8  
steps = 84, shift = 0.00519, angle = 0.014 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.61507232 -0.66495249 0.42370267 168.37864732  
-0.33946361 0.26169295 0.90348274 171.05723390  
-0.71165322 -0.69953892 -0.06476705 170.75134352  
Axis -0.80507570 0.57020280 0.16346828  
Axis point -0.00000000 242.59597651 2.53416876  
Rotation angle (degrees) 95.39381821  
Shift along axis -10.10781595  
  
Average map value = 0.165 for 10778 atoms, 8237 outside contour  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.5325, correlation about mean = 0.1728, overlap = 71.78  
steps = 136, shift = 17.3, angle = 31.1 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.99667241 -0.03970518 -0.07118574 221.63283588  
0.04783640 -0.42219101 0.90524374 155.32704599  
-0.06599686 -0.90563677 -0.41888680 191.95398916  
Axis -0.99882948 -0.00286203 0.04828541  
Axis point 0.00000000 141.86732651 51.96801736  
Rotation angle (degrees) 114.97373434  
Shift along axis -212.54938351  
  
Average map value = 0.1718 for 10778 atoms, 8155 outside contour  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.5325, correlation about mean = 0.1729, overlap = 71.77  
steps = 40, shift = 0.0559, angle = 0.155 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.99686401 -0.03962426 -0.06849716 221.56154822  
0.04542291 -0.42226949 0.90533145 155.23057666  
-0.06479737 -0.90560373 -0.41914544 191.99948237  
Axis -0.99889697 -0.00204078 0.04691132  
Axis point 0.00000000 141.82272488 51.81913313  
Rotation angle (degrees) 114.97833294  
Shift along axis -212.62700093  
  
Average map value = 0.1717 for 10778 atoms, 8156 outside contour  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.5566, correlation about mean = 0.1935, overlap = 88.13  
steps = 136, shift = 27.8, angle = 20.7 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.16049043 -0.05430156 0.98554245 175.11560706  
-0.93619233 -0.32470992 0.13456314 151.12138555  
0.31270846 -0.94425342 -0.10294954 172.75504673  
Axis -0.69720413 0.43483077 -0.56993737  
Axis point 0.00000000 158.87089711 -59.39319337  
Rotation angle (degrees) 129.31508292  
Shift along axis -154.83865281  
  
Average map value = 0.2161 for 10778 atoms, 7275 outside contour  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.5566, correlation about mean = 0.1934, overlap = 88.13  
steps = 48, shift = 0.0133, angle = 0.0286 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.16090828 -0.05455747 0.98546018 175.13128167  
-0.93612450 -0.32477722 0.13487222 151.11798092  
0.31269676 -0.94421552 -0.10333193 172.76469775  
Axis -0.69739113 0.43479248 -0.56973775  
Axis point 0.00000000 158.85569593 -59.32872077  
Rotation angle (degrees) 129.31626165  
Shift along axis -154.86061078  
  
Average map value = 0.2161 for 10778 atoms, 7277 outside contour  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.5566, correlation about mean = 0.1936, overlap = 88.11  
steps = 40, shift = 0.0416, angle = 0.0503 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.16023391 -0.05401524 0.98559992 175.08974489  
-0.93618805 -0.32478942 0.13440091 151.11983015  
0.31285277 -0.94424250 -0.10261070 172.76481307  
Axis -0.69709118 0.43477400 -0.57011880  
Axis point 0.00000000 158.86064501 -59.42203525  
Rotation angle (degrees) 129.31497844  
Shift along axis -154.84701256  
  
Average map value = 0.2161 for 10778 atoms, 7275 outside contour  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.5566, correlation about mean = 0.1935, overlap = 88.12  
steps = 44, shift = 0.0245, angle = 0.0312 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.16017103 -0.05452748 0.98558194 175.09332041  
-0.93627715 -0.32461607 0.13419891 151.12896333  
0.31261824 -0.94427267 -0.10304692 172.75572740  
Axis -0.69710034 0.43498895 -0.56994362  
Axis point 0.00000000 158.90366936 -59.38832302  
Rotation angle (degrees) 129.32704123  
Shift along axis -154.77920805  
  
Average map value = 0.2161 for 10778 atoms, 7275 outside contour  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.5566, correlation about mean = 0.1936, overlap = 88.08  
steps = 48, shift = 0.0615, angle = 0.0514 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.15935353 -0.05418959 0.98573308 175.02208172  
-0.93639474 -0.32455036 0.13353574 151.14350633  
0.31268382 -0.94431471 -0.10246109 172.76182045  
Axis -0.69676010 0.43508250 -0.57028816  
Axis point 0.00000000 158.93403749 -59.46030323  
Rotation angle (degrees) 129.33318806  
Shift along axis -154.71252821  
  
Average map value = 0.216 for 10778 atoms, 7278 outside contour  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.5566, correlation about mean = 0.1936, overlap = 88.08  
steps = 44, shift = 0.00709, angle = 0.0104 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.15951575 -0.05411197 0.98571111 175.03428193  
-0.93636050 -0.32457684 0.13371138 151.13683376  
0.31270365 -0.94431006 -0.10244343 172.75984387  
Axis -0.69681401 0.43502013 -0.57026986  
Axis point 0.00000000 158.91916448 -59.46050948  
Rotation angle (degrees) 129.32750649  
Shift along axis -154.73850761  
  
Average map value = 0.216 for 10778 atoms, 7277 outside contour  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.5566, correlation about mean = 0.1935, overlap = 88.13  
steps = 40, shift = 0.0647, angle = 0.0754 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.16075921 -0.05444507 0.98549073 175.12183719  
-0.93613812 -0.32478230 0.13476541 151.11643352  
0.31273266 -0.94422026 -0.10317986 172.76252541  
Axis -0.69732593 0.43478950 -0.56981982  
Axis point 0.00000000 158.85504984 -59.34848420  
Rotation angle (degrees) 129.31633854  
Shift along axis -154.85667169  
  
Average map value = 0.2161 for 10778 atoms, 7276 outside contour  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.5566, correlation about mean = 0.1936, overlap = 88.11  
steps = 40, shift = 0.0344, angle = 0.0415 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.16019913 -0.05400149 0.98560633 175.08764983  
-0.93619282 -0.32478747 0.13437242 151.11989166  
0.31285632 -0.94424396 -0.10258648 172.76507620  
Axis -0.69707689 0.43477783 -0.57013336  
Axis point 0.00000000 158.86169738 -59.42527394  
Rotation angle (degrees) 129.31529736  
Shift along axis -154.84510930  
  
Average map value = 0.2161 for 10778 atoms, 7275 outside contour  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.5566, correlation about mean = 0.1936, overlap = 88.1  
steps = 40, shift = 0.0085, angle = 0.0106 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.16011373 -0.05415471 0.98561180 175.07212320  
-0.93623253 -0.32472360 0.13425003 151.12529507  
0.31278118 -0.94425715 -0.10269411 172.76620785  
Axis -0.69705397 0.43485965 -0.57009898  
Axis point 0.00000000 158.87841484 -59.41182067  
Rotation angle (degrees) 129.32007999  
Shift along axis -154.81026453  
  
Average map value = 0.2161 for 10778 atoms, 7275 outside contour  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.5566, correlation about mean = 0.1935, overlap = 88.13  
steps = 44, shift = 0.0402, angle = 0.0222 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.16024482 -0.05450381 0.98557125 175.10226651  
-0.93626007 -0.32463408 0.13427449 151.12662510  
0.31263158 -0.94426785 -0.10305067 172.75508492  
Axis -0.69712686 0.43496144 -0.56993218  
Axis point 0.00000000 158.89764215 -59.38832820  
Rotation angle (degrees) 129.32511422  
Shift along axis -154.79292105  
  
Average map value = 0.2161 for 10778 atoms, 7276 outside contour  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.5566, correlation about mean = 0.1936, overlap = 88.07  
steps = 48, shift = 0.0702, angle = 0.0632 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.15923591 -0.05413033 0.98575534 175.01787396  
-0.93644492 -0.32443887 0.13345473 151.14760972  
0.31259344 -0.94435641 -0.10235239 172.75416225  
Axis -0.69669684 0.43513168 -0.57032792  
Axis point 0.00000000 158.95030550 -59.48792355  
Rotation angle (degrees) 129.32938926  
Shift along axis -154.69180879  
  
Average map value = 0.216 for 10778 atoms, 7279 outside contour  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.5566, correlation about mean = 0.1936, overlap = 88.09  
steps = 156, shift = 1.43, angle = 44.3 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.15977635 -0.05403610 0.98567306 175.04550236  
-0.93628560 -0.32468583 0.13397097 151.12983753  
0.31279484 -0.94427693 -0.10247034 172.76658376  
Axis -0.69691438 0.43490788 -0.57023284  
Axis point 0.00000000 158.89199487 -59.44186249  
Rotation angle (degrees) 129.32288856  
Shift along axis -154.78135043  
  
Average map value = 0.216 for 10778 atoms, 7277 outside contour  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.5566, correlation about mean = 0.1936, overlap = 88.1  
steps = 164, shift = 1.29, angle = 45.8 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.15994937 -0.05410045 0.98564147 175.06144922  
-0.93625613 -0.32471254 0.13411217 151.12728913  
0.31279465 -0.94426406 -0.10258944 172.76653549  
Axis -0.69698728 0.43488132 -0.57016398  
Axis point 0.00000000 158.88459378 -59.42645545  
Rotation angle (degrees) 129.32188105  
Shift along axis -154.79842532  
  
Average map value = 0.2161 for 10778 atoms, 7275 outside contour  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.4832, correlation about mean = 0.08746, overlap = 75.58  
steps = 92, shift = 16.2, angle = 16.9 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
-0.22637985 0.77655855 -0.58797004 227.35394463  
0.72580050 0.53705544 0.42986610 230.48944722  
0.64958874 -0.32943592 -0.68520523 209.79765192  
Axis -0.52264238 -0.85183584 -0.03493776  
Axis point -7.20050958 0.00000000 115.03231517  
Rotation angle (degrees) 133.41398780  
Shift along axis -322.49383848  
  
Average map value = 0.1839 for 10778 atoms, 8062 outside contour  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.4832, correlation about mean = 0.08767, overlap = 75.61  
steps = 28, shift = 0.081, angle = 0.0581 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
-0.22613784 0.77601144 -0.58878494 227.43036214  
0.72574946 0.53739119 0.42953253 230.51474770  
0.64973004 -0.33017679 -0.68471449 209.76045994  
Axis -0.52255939 -0.85190166 -0.03457226  
Axis point -7.22085841 0.00000000 115.10567397  
Rotation angle (degrees) 133.37186361  
Shift along axis -322.47366203  
  
Average map value = 0.184 for 10778 atoms, 8052 outside contour  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.5402, correlation about mean = 0.1433, overlap = 87.67  
steps = 200, shift = 28.7, angle = 20.3 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
-0.84992894 -0.37029252 0.37483867 143.29808717  
0.35973749 0.11197978 0.92630950 205.73418187  
-0.38497983 0.92214084 0.03803323 241.03090680  
Axis -0.00395620 0.72109513 0.69282477  
Axis point 76.74419989 0.00000000 -6.86186477  
Rotation angle (degrees) 148.20710322  
Shift along axis 314.77918299  
  
Average map value = 0.218 for 10778 atoms, 7617 outside contour  

> fitmap #13 inMap #3 resolution 15 metric correlation

Fit map Kendall_Fran_SHAPE_MaP.pdb map 15 in map
cryosparc_P12_J2741_004_volume_map_sharp.mrc using 2552 points  
correlation = 0.5402, correlation about mean = 0.1432, overlap = 87.66  
steps = 156, shift = 0.0158, angle = 0.0102 degrees  
  
Position of Kendall_Fran_SHAPE_MaP.pdb map 15 (#15) relative to
cryosparc_P12_J2741_004_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
-0.84996351 -0.37036368 0.37468994 143.29515567  
0.35958027 0.11197574 0.92637103 205.71344185  
-0.38505037 0.92211275 0.03800016 241.02705194  
Axis -0.00404170 0.72110006 0.69281914  
Axis point 76.75797321 0.00000000 -6.85317863  
Rotation angle (degrees) 148.21100132  
Shift along axis 314.74897549  
  
Average map value = 0.218 for 10778 atoms, 7617 outside contour  

> view matrix models
> #9,0.98081,-0.14932,-0.12532,295.8,0.11515,0.9625,-0.24562,147.87,0.1573,0.22647,0.96123,63.947

Fit in map shortcut requires 1 displayed atomic model and 1 map or two maps,
got 2 atomic models, 0 maps.  

> view matrix models
> #9,-0.70193,-0.54603,-0.45732,267.45,0.66073,-0.25947,-0.70435,120.32,0.26593,-0.79658,0.54291,31.554

> close

> open
> /Users/francescappadoo/Downloads/rnacomposer-2024-07-05-162506/Kendall.pdb

Chain information for Kendall.pdb  
---  
Chain | Description  
1.1/A 1.2/A 1.3/A 1.4/A 1.5/A 1.6/A 1.7/A 1.8/A 1.9/A 1.10/A | No description available  
  

> tile

10 models tiled  

> tile

10 models tiled  

> select add #1.1

10778 atoms, 11624 bonds, 336 residues, 1 model selected  

> select add #1.2

21556 atoms, 23248 bonds, 672 residues, 2 models selected  

> select subtract #1.1

10778 atoms, 11624 bonds, 336 residues, 1 model selected  

> view matrix models
> #1.2,-0.77608,0.42708,0.464,246,-0.42804,0.18361,-0.88491,-39.84,-0.46313,-0.88537,0.040314,-1.4679

> ui mousemode right "rotate selected models"

> view matrix models
> #1.2,-0.99685,0.0053658,0.079142,235.11,-0.03062,0.89435,-0.44632,-29.436,-0.073175,-0.44733,-0.89137,-40.89

> select subtract #1.2

Nothing selected  

> select add #1.1

10778 atoms, 11624 bonds, 336 residues, 1 model selected  

> view matrix models
> #1.1,-0.84624,0.45526,0.27681,12.141,-0.26343,0.094082,-0.96008,-13.671,-0.46313,-0.88537,0.040314,-14.144

> view matrix models
> #1.1,-0.94779,0.15957,0.27611,10.526,-0.25925,0.11866,-0.95849,-13.508,-0.18572,-0.98003,-0.071099,-16.38

> select subtract #1.1

Nothing selected  

> select add #1.3

10778 atoms, 11624 bonds, 336 residues, 1 model selected  

> view matrix models
> #1.3,-0.83903,0.45263,0.30191,438.71,-0.28555,0.106,-0.95248,-5.9169,-0.46313,-0.88537,0.040314,-5.1623

> view matrix models
> #1.3,-0.42479,-0.28635,-0.85881,436.79,0.29892,0.85108,-0.43163,-10.677,0.85452,-0.44007,-0.27594,-13.804

> select subtract #1.3

Nothing selected  

> select add #1.3

10778 atoms, 11624 bonds, 336 residues, 1 model selected  

> select subtract #1.3

Nothing selected  

> select add #1.4

10778 atoms, 11624 bonds, 336 residues, 1 model selected  

> view matrix models
> #1.4,0.46433,0.34235,0.81682,649.68,0.2095,0.85364,-0.47687,-9.0617,-0.86053,0.39255,0.32464,-16.519

> select subtract #1.4

Nothing selected  

> select add #1.5

10778 atoms, 11624 bonds, 336 residues, 1 model selected  

> view matrix models
> #1.5,-0.77504,0.42843,0.4645,10.53,-0.22508,0.49968,-0.83645,-249,-0.59047,-0.75283,-0.29084,-36.702

> view matrix models
> #1.5,-0.7507,0.44259,0.49047,11.965,0.039705,0.7713,-0.63523,-235.24,-0.65945,-0.4574,-0.59659,-46.06

> select subtract #1.5

Nothing selected  

> select add #1.6

10778 atoms, 11624 bonds, 336 residues, 1 model selected  

> view matrix models
> #1.6,0.3037,0.42988,0.85027,224.32,0.02731,0.88813,-0.45878,-234.87,-0.95238,0.16255,0.25799,-37.932

> select subtract #1.6

Nothing selected  

> select add #1.7

10778 atoms, 11624 bonds, 336 residues, 1 model selected  

> view matrix models
> #1.7,-0.62352,-0.17127,0.76281,453.65,-0.57891,0.75689,-0.30326,-238.5,-0.52543,-0.6307,-0.57109,-26.497

> select subtract #1.7

Nothing selected  

> select add #1.8

10778 atoms, 11624 bonds, 336 residues, 1 model selected  

> view matrix models
> #1.8,-0.94566,-0.23092,0.22889,646.42,-0.25693,0.96215,-0.090827,-235,-0.19926,-0.1447,-0.9692,-28.549

> select subtract #1.8

Nothing selected  

> select add #1.9

10778 atoms, 11624 bonds, 336 residues, 1 model selected  

> view matrix models
> #1.9,-0.28764,0.063823,0.95561,-1.3162,-0.93083,-0.2535,-0.26325,-445.56,0.22545,-0.96523,0.13233,-4.2972

> select add #1.10

21556 atoms, 23248 bonds, 672 residues, 2 models selected  

> select subtract #1.9

10778 atoms, 11624 bonds, 336 residues, 1 model selected  

> view matrix models
> #1.10,-0.32208,0.20437,0.92439,228.03,-0.19088,0.94235,-0.27484,-455.15,-0.92727,-0.26497,-0.2645,-9.0846

> select subtract #1.10

Nothing selected  

> select #1:63-68

1890 atoms, 2030 bonds, 60 residues, 10 models selected  

> hide #1.6 models

> show #1.6 models

> hide #1.7 models

> hide #1.8 models

> hide #1.9 models

> hide #1.10 models

> hide #1.3 models

> hide #1.4 models

> hide #1.5 models

> hide #1.2 models

> hide #1.1 models

> select #1:63-68

1890 atoms, 2030 bonds, 60 residues, 10 models selected  

> tile

1 model tiled  

> select #1.6:63-68

189 atoms, 203 bonds, 6 residues, 1 model selected  

> color sel lime

> select #1.6:85-99

481 atoms, 518 bonds, 15 residues, 1 model selected  

> color sel red

> select up

10778 atoms, 11624 bonds, 336 residues, 1 model selected  

> select up

107780 atoms, 116240 bonds, 3360 residues, 10 models selected  

> select down

10778 atoms, 11624 bonds, 336 residues, 1 model selected  

> select down

481 atoms, 518 bonds, 15 residues, 1 model selected  

> select down

481 atoms, 518 bonds, 15 residues, 1 model selected  

> select #1.6:77-79

97 atoms, 104 bonds, 3 residues, 1 model selected  

> color sel magenta

> molmap #1.6 20

Opened Kendall.pdb map 20 as #2, grid size 31,41,35, pixel 6.67, shown at
level 0.0292, step 1, values float32  

> open /Users/francescappadoo/Downloads/cryosparc_P12_J2773_004_volume_map.mrc

Opened cryosparc_P12_J2773_004_volume_map.mrc as #3, grid size 128,128,128,
pixel 2.96, shown at level 0.117, step 1, values float32  

> tile

3 models tiled  

> hide #!2 models

> tile

2 models tiled  

> surface dust #3 size 29.6

> volume #3 level 0.15

> volume #3 level 0.2

> volume #3 level 0.25

> volume #3 level 0.3

> volume #3 level 0.35

> volume #3 level 0.4

> tile

2 models tiled  

> transparency #3.1 50

> view matrix models
> #1.6,0.87646,0.38949,-0.28304,236.83,0.27866,0.069028,0.9579,-210.62,0.39263,-0.91844,-0.048037,14.582

> fitmap #1.6 inMap 3 search 200 res 15

Invalid "inMap" argument: invalid density map specifier  

> fitmap #1.6 inMap #3 search 200 resolution 15

Opened Kendall.pdb map 15 as #2, grid size 35,49,41, pixel 5, shown at level
0.0384, step 1, values float32  
Found 60 unique fits from 200 random placements having fraction of points
inside contour >= 0.100 (199 of 200).  
  
Correlations and times found:  
0.5948 (13), 0.579 (12), 0.5596 (5), 0.5595 (16), 0.5591 (11), 0.556 (9),
0.5531 (20), 0.5459 (2), 0.5446 (5), 0.544 (5), 0.5428 (15), 0.5424 (2),
0.5423 (4), 0.5402 (1), 0.5386 (1), 0.538 (7), 0.5332 (6), 0.532 (4), 0.5281
(1), 0.528 (1), 0.5214 (4), 0.5193 (1), 0.517 (2), 0.5119 (1), 0.5045 (1),
0.5003 (3), 0.4932 (1), 0.4886 (3), 0.4874 (1), 0.482 (1), 0.482 (1), 0.4774
(2), 0.4769 (5), 0.4743 (1), 0.4726 (2), 0.4717 (3), 0.4662 (1), 0.4654 (1),
0.4624 (1), 0.4599 (1), 0.4554 (1), 0.4554 (1), 0.4546 (1), 0.451 (1), 0.4497
(2), 0.4478 (1), 0.4476 (1), 0.4476 (1), 0.4472 (1), 0.4425 (1), 0.4383 (2),
0.4382 (1), 0.4381 (1), 0.4374 (1), 0.4374 (2), 0.4373 (1), 0.4319 (1), 0.43
(1), 0.3909 (1), 0.3356 (1)  
  
Best fit found:  
Fit map Kendall.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc using
2303 points  
correlation = 0.5948, correlation about mean = 0.3334, overlap = 285.9  
steps = 876, shift = 34.5, angle = 80.7 degrees  
Position of Kendall.pdb map 15 (#2) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#3) coordinates:  
Matrix rotation and translation  
-0.87408150 0.14816280 0.46263306 177.93677106  
0.46471903 0.53241160 0.70751260 209.33605278  
-0.14148413 0.83341805 -0.53422519 181.54195966  
Axis 0.18153653 0.87104523 0.45642600  
Axis point 71.85390074 0.00000000 23.19565781  
Rotation angle (degrees) 159.70968164  
Shift along axis 297.50366517  
  
Found 60 fits.  

> ui tool show "Fit in Map"

> fitmap #1.6 inMap #3

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#3) using 10778 atoms  
average map value = 0, steps = 24  
shifted from previous position = 0  
rotated from previous position = 0 degrees  
atoms outside contour = 10778, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#3) coordinates:  
Matrix rotation and translation  
-0.87408150 0.14816280 0.46263306 177.93677106  
0.46471903 0.53241160 0.70751260 209.33605278  
-0.14148413 0.83341805 -0.53422519 181.54195966  
Axis 0.18153653 0.87104523 0.45642600  
Axis point 71.85390074 0.00000000 23.19565781  
Rotation angle (degrees) 159.70968164  
Shift along axis 297.50366517  
  

> fitmap #1.6 inMap #3 resolution 15 metric correlation

Fit map Kendall.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc using
2303 points  
correlation = 0.595, correlation about mean = 0.3341, overlap = 285.7  
steps = 164, shift = 2.76, angle = 19.5 degrees  
  
Position of Kendall.pdb map 15 (#2) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#3) coordinates:  
Matrix rotation and translation  
-0.74337579 -0.38469320 0.54717786 236.93637367  
0.29723199 0.54285966 0.78546579 147.62822717  
-0.59920412 0.74653500 -0.28920557 135.26653498  
Axis -0.02917389 0.85907367 0.51101987  
Axis point 129.58037976 0.00000000 -30.23508069  
Rotation angle (degrees) 138.14714868  
Shift along axis 189.03505541  
  
Average map value = 0 for 2554 atoms, 10778 outside contour  

> close #1.10

> close #1.9

> close #1.8

> close #1.7

> close #1.1

> close #1.2

> close #1.3

> close #1.4

> close #1.5

> fitmap #1.6 inMap #3 search 200 resolution 15

Found 63 unique fits from 200 random placements having fraction of points
inside contour >= 0.100 (199 of 200).  
  
Correlations and times found:  
0.5948 (11), 0.579 (13), 0.5596 (7), 0.5595 (23), 0.5591 (9), 0.5559 (9),
0.553 (8), 0.5445 (2), 0.544 (4), 0.5428 (9), 0.5425 (4), 0.5424 (1), 0.5401
(1), 0.5386 (1), 0.538 (7), 0.5332 (6), 0.5326 (2), 0.5281 (2), 0.5281 (1),
0.5215 (5), 0.517 (1), 0.5119 (1), 0.5064 (1), 0.5003 (2), 0.4993 (1), 0.4992
(1), 0.4989 (4), 0.4932 (2), 0.4891 (1), 0.4886 (3), 0.4875 (6), 0.4851 (2),
0.4848 (3), 0.4821 (2), 0.4774 (2), 0.4769 (2), 0.4763 (1), 0.4743 (2), 0.4725
(2), 0.4717 (5), 0.4704 (1), 0.4699 (1), 0.4694 (1), 0.4634 (2), 0.4624 (1),
0.4554 (5), 0.4554 (1), 0.4498 (1), 0.4413 (1), 0.4383 (3), 0.4377 (1), 0.4372
(1), 0.4364 (1), 0.432 (1), 0.4289 (1), 0.4249 (1), 0.4067 (1), 0.3956 (1),
0.3778 (1), 0.3758 (1), 0.374 (1), 0.3664 (1), 0.3537 (1)  
  
Best fit found:  
Fit map Kendall.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc using
2303 points  
correlation = 0.5948, correlation about mean = 0.3334, overlap = 285.9  
steps = 280, shift = 17.7, angle = 92.5 degrees  
Position of Kendall.pdb map 15 (#2) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#3) coordinates:  
Matrix rotation and translation  
-0.87459978 0.14947307 0.46122995 177.90706234  
0.46440818 0.53154921 0.70836467 209.31072644  
-0.13928493 0.83373451 -0.53430930 181.62489061  
Axis 0.18180623 0.87084217 0.45670605  
Axis point 71.77342620 0.00000000 23.28456824  
Rotation angle (degrees) 159.83103917  
Shift along axis 297.57040459  
  
Found 63 fits.  

> fitmap #1.6 inMap #3 resolution 15 metric correlation

Fit map Kendall.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc using
2303 points  
correlation = 0.5951, correlation about mean = 0.3342, overlap = 285.7  
steps = 364, shift = 9.77, angle = 77.1 degrees  
  
Position of Kendall.pdb map 15 (#2) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#3) coordinates:  
Matrix rotation and translation  
0.81225459 0.29049049 -0.50582380 208.97203839  
0.55671805 -0.64488711 0.52362734 421.46322127  
-0.17409050 -0.70692000 -0.68553383 403.36980388  
Axis -0.94513009 -0.25478997 0.20447785  
Axis point 0.00000000 270.43957712 152.87062948  
Rotation angle (degrees) 139.38344004  
Shift along axis -222.41017387  
  
Average map value = 2.893e-05 for 941 atoms, 10778 outside contour  

> fitmap #1.6 inMap #3 resolution 15 metric correlation

Fit map Kendall.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc using
2303 points  
correlation = 0, correlation about mean = 0, overlap = 0  
steps = 24, shift = 0, angle = 0 degrees  
  
Position of Kendall.pdb map 15 (#2) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#3) coordinates:  
Matrix rotation and translation  
0.81225459 0.29049049 -0.50582380 208.97203839  
0.55671805 -0.64488711 0.52362734 421.46322127  
-0.17409050 -0.70692000 -0.68553383 403.36980388  
Axis -0.94513009 -0.25478997 0.20447785  
Axis point 0.00000000 270.43957712 152.87062948  
Rotation angle (degrees) 139.38344004  
Shift along axis -222.41017387  
  
Average map value = 2.893e-05 for 941 atoms, 10778 outside contour  

> fitmap #1.6 inMap #3 resolution 15 metric correlation

Fit map Kendall.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc using
2303 points  
correlation = 0, correlation about mean = 0, overlap = 0  
steps = 24, shift = 0, angle = 0 degrees  
  
Position of Kendall.pdb map 15 (#2) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#3) coordinates:  
Matrix rotation and translation  
0.81225459 0.29049049 -0.50582380 208.97203839  
0.55671805 -0.64488711 0.52362734 421.46322127  
-0.17409050 -0.70692000 -0.68553383 403.36980388  
Axis -0.94513009 -0.25478997 0.20447785  
Axis point 0.00000000 270.43957712 152.87062948  
Rotation angle (degrees) 139.38344004  
Shift along axis -222.41017387  
  
Average map value = 2.893e-05 for 941 atoms, 10778 outside contour  

> select add #1.6

10778 atoms, 11624 bonds, 336 residues, 1 model selected  

> fitmap #1.6 inMap #3 resolution 15 metric correlation

Fit map Kendall.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc using
2303 points  
correlation = 0, correlation about mean = 0, overlap = 0  
steps = 24, shift = 0, angle = 0 degrees  
  
Position of Kendall.pdb map 15 (#2) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#3) coordinates:  
Matrix rotation and translation  
0.63356809 0.67491722 -0.37825676 73.97662416  
0.69537550 -0.28241110 0.66083044 327.03694801  
0.33918194 -0.68171161 -0.64824756 450.68616277  
Axis -0.88188667 -0.47126988 0.01343860  
Axis point 0.00000000 262.48474417 166.60955065  
Rotation angle (degrees) 130.43201254  
Shift along axis -213.30507170  
  
Average map value = -0.0001145 for 4965 atoms, 10778 outside contour  

> fitmap #1.6 inMap #3 resolution 15 metric correlation

Fit map Kendall.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc using
2303 points  
correlation = 0, correlation about mean = 0, overlap = 0  
steps = 24, shift = 0, angle = 0 degrees  
  
Position of Kendall.pdb map 15 (#2) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#3) coordinates:  
Matrix rotation and translation  
0.63356809 0.67491722 -0.37825676 73.97662416  
0.69537550 -0.28241110 0.66083044 327.03694801  
0.33918194 -0.68171161 -0.64824756 450.68616277  
Axis -0.88188667 -0.47126988 0.01343860  
Axis point 0.00000000 262.48474417 166.60955065  
Rotation angle (degrees) 130.43201254  
Shift along axis -213.30507170  
  
Average map value = -0.0001145 for 4965 atoms, 10778 outside contour  

> fitmap #1.6 inMap #3

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#3) using 10778 atoms  
average map value = 0.000569, steps = 216  
shifted from previous position = 25.3  
rotated from previous position = 30.9 degrees  
atoms outside contour = 10778, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#3) coordinates:  
Matrix rotation and translation  
-0.68862778 -0.15837686 0.70760762 188.47826197  
0.64061688 0.32429713 0.69601820 224.20952583  
-0.33970826 0.93260289 -0.12186112 156.16022669  
Axis 0.17677079 0.78253099 0.59699024  
Axis point 62.99666340 0.00000000 -40.58258028  
Rotation angle (degrees) 137.99581087  
Shift along axis 301.99448289  
  

> fitmap #1.6 inMap #3

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#3) using 10778 atoms  
average map value = 0.0005692, steps = 76  
shifted from previous position = 0.111  
rotated from previous position = 0.129 degrees  
atoms outside contour = 10778, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#3) coordinates:  
Matrix rotation and translation  
-0.68784005 -0.15955983 0.70810784 188.57230042  
0.64151253 0.32280132 0.69588860 224.31759397  
-0.33961398 0.93292014 -0.11967604 156.12854890  
Axis 0.17688813 0.78187719 0.59781155  
Axis point 62.89732235 0.00000000 -40.92205964  
Rotation angle (degrees) 137.93261908  
Shift along axis 302.08046169  
  

> hide #!3 models

> show #!3 models

> tile

2 models tiled  

> view matrix models
> #1.6,-0.92786,-0.1317,0.3489,375.79,0.33352,0.12554,0.93435,-183.38,-0.16685,0.98331,-0.072556,-23.801

> view matrix models
> #1.6,0.08694,0.83393,-0.54498,385.57,0.47097,0.44765,0.76013,-185.2,0.87785,-0.32276,-0.35384,24.021

> view matrix models
> #1.6,0.77479,-0.3495,-0.52684,422.75,0.6186,0.24699,0.74588,-178.11,-0.13056,-0.9038,0.40756,8.0181

> ui mousemode right "translate selected models"

> view matrix models
> #1.6,0.77479,-0.3495,-0.52684,431.22,0.6186,0.24699,0.74588,-186.5,-0.13056,-0.9038,0.40756,195.62

> fitmap #1.6 inMap #3

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#3) using 10778 atoms  
average map value = 0.6452, steps = 80  
shifted from previous position = 15.1  
rotated from previous position = 14.7 degrees  
atoms outside contour = 6305, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#3) coordinates:  
Matrix rotation and translation  
0.18666217 -0.90141055 0.39066132 264.95750741  
0.29114401 0.43054350 0.85432280 291.33537296  
-0.93829223 -0.04573105 0.34280650 280.79213176  
Axis -0.45011691 0.66460964 0.59639651  
Axis point 331.84332001 0.00000000 -265.97646267  
Rotation angle (degrees) 91.14564310  
Shift along axis 241.82588876  
  

> select add #1

10778 atoms, 11624 bonds, 336 residues, 2 models selected  

> select subtract #1

Nothing selected  

> hide #!1 models

> select add #1.6

10778 atoms, 11624 bonds, 336 residues, 1 model selected  

> select add #1

10778 atoms, 11624 bonds, 336 residues, 2 models selected  

> select subtract #1

Nothing selected  

> show #!1 models

> tile

2 models tiled  

> tile

2 models tiled  

> fitmap #1.6 inMap #3

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#3) using 10778 atoms  
average map value = 0.002113, steps = 188  
shifted from previous position = 9.97  
rotated from previous position = 13.5 degrees  
atoms outside contour = 10778, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#3) coordinates:  
Matrix rotation and translation  
-0.86549418 0.23184666 0.44403487 93.88621740  
0.42072349 -0.14464846 0.89558280 168.52700508  
0.27186685 0.96193756 0.02764910 339.31132873  
Axis 0.25130191 0.65204290 0.71532329  
Axis point -9.10122261 -70.41400052 0.00000000  
Rotation angle (degrees) 172.41354794  
Shift along axis 376.19791819  
  

> fitmap #1.6 inMap #3

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#3) using 10778 atoms  
average map value = 0.002113, steps = 80  
shifted from previous position = 0.0948  
rotated from previous position = 0.208 degrees  
atoms outside contour = 10778, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#3) coordinates:  
Matrix rotation and translation  
-0.86725625 0.23069090 0.44118966 93.80572638  
0.41823052 -0.14317106 0.89698677 168.37863855  
0.27009228 0.96243633 0.02768405 339.23533441  
Axis 0.24965283 0.65263917 0.71535696  
Axis point -8.74933095 -70.56013357 0.00000000  
Rotation angle (degrees) 172.46792768  
Shift along axis 375.98371685  
  

> fitmap #1.6 inMap #3

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#3) using 10778 atoms  
average map value = 0.002112, steps = 92  
shifted from previous position = 0.0817  
rotated from previous position = 0.0656 degrees  
atoms outside contour = 10778, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#3) coordinates:  
Matrix rotation and translation  
-0.86770982 0.22972128 0.44080359 93.81100123  
0.41785326 -0.14319658 0.89715850 168.39489369  
0.26921798 0.96266442 0.02826333 339.14031969  
Axis 0.24914890 0.65261829 0.71555167  
Axis point -8.58758531 -70.45217185 0.00000000  
Rotation angle (degrees) 172.44606655  
Shift along axis 375.94291798  
  

> fitmap #1.6 inMap #3

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#3) using 10778 atoms  
average map value = 0.002112, steps = 96  
shifted from previous position = 0.0827  
rotated from previous position = 0.181 degrees  
atoms outside contour = 10778, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#3) coordinates:  
Matrix rotation and translation  
-0.86615525 0.23134440 0.44300662 93.85132214  
0.41983434 -0.14408220 0.89609119 168.47715310  
0.27113505 0.96214345 0.02767127 339.26037623  
Axis 0.25067460 0.65226896 0.71533730  
Axis point -8.96387895 -70.45583233 0.00000000  
Rotation angle (degrees) 172.42932802  
Shift along axis 376.10416036  
  

> select add #1

10778 atoms, 11624 bonds, 336 residues, 2 models selected  

> select up

10778 atoms, 11624 bonds, 336 residues, 6 models selected  

> select up

10778 atoms, 11624 bonds, 336 residues, 6 models selected  

> fitmap #1 inMap #3 search 200 resolution 15

Found 68 unique fits from 200 random placements having fraction of points
inside contour >= 0.100 (198 of 200).  
  
Correlations and times found:  
0.5948 (11), 0.579 (13), 0.5596 (5), 0.5595 (23), 0.5591 (5), 0.556 (5),
0.5531 (10), 0.5445 (5), 0.544 (4), 0.5428 (15), 0.5423 (3), 0.5422 (3),
0.5402 (2), 0.5392 (1), 0.538 (3), 0.5332 (4), 0.5281 (2), 0.5215 (6), 0.5201
(1), 0.5192 (1), 0.5188 (1), 0.5171 (1), 0.5119 (2), 0.5042 (1), 0.5038 (2),
0.5003 (2), 0.4992 (1), 0.4953 (1), 0.4895 (1), 0.4886 (2), 0.4877 (1), 0.4875
(8), 0.4819 (1), 0.4773 (4), 0.477 (4), 0.4742 (4), 0.4718 (4), 0.4712 (1),
0.4654 (1), 0.4634 (1), 0.4624 (1), 0.4599 (1), 0.4554 (1), 0.4551 (1), 0.4548
(1), 0.4497 (3), 0.4476 (1), 0.4472 (1), 0.4452 (2), 0.4425 (1), 0.4383 (2),
0.4377 (1), 0.4377 (1), 0.4363 (1), 0.4346 (1), 0.4333 (1), 0.4306 (1), 0.43
(1), 0.43 (1), 0.4289 (1), 0.4273 (1), 0.4269 (1), 0.4249 (1), 0.4233 (1),
0.4068 (1), 0.3996 (2), 0.3664 (1), 0.3441 (1)  
  
Best fit found:  
Fit map Kendall.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc using
2303 points  
correlation = 0.5948, correlation about mean = 0.3334, overlap = 285.9  
steps = 200, shift = 40.1, angle = 37.3 degrees  
Position of Kendall.pdb map 15 (#2) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#3) coordinates:  
Matrix rotation and translation  
-0.87389102 0.14678494 0.46343143 177.90313902  
0.46449608 0.53331357 0.70697950 209.30667955  
-0.14338031 0.83308507 -0.53423898 181.48585683  
Axis 0.18106520 0.87127387 0.45617676  
Axis point 71.93066120 0.00000000 23.15242392  
Rotation angle (degrees) 159.62075578  
Shift along axis 297.36513814  
  
Found 68 fits.  

> fitmap sel inMap #3 resolution 15 metric correlation

Fit map Kendall.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc using
2303 points  
correlation = 0.5951, correlation about mean = 0.3342, overlap = 285.7  
steps = 96, shift = 0.825, angle = 2.3 degrees  
  
Position of Kendall.pdb map 15 (#2) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#3) coordinates:  
Matrix rotation and translation  
-0.87069065 0.11921757 0.47716348 182.28613045  
0.45695563 0.55490824 0.69517507 205.48232679  
-0.18190485 0.82332492 -0.53763057 176.33650413  
Axis 0.17050909 0.87691977 0.44937553  
Axis point 76.25779356 0.00000000 20.75585514  
Rotation angle (degrees) 157.92709992  
Shift along axis 290.51426718  
  
Average map value = -0.003925 for 10778 atoms, 10778 outside contour  

> fitmap sel inMap #3 resolution 15 metric correlation

Fit map Kendall.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc using
2303 points  
correlation = 0.5951, correlation about mean = 0.3342, overlap = 285.7  
steps = 72, shift = 5.85, angle = 4.46 degrees  
  
Position of Kendall.pdb map 15 (#2) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#3) coordinates:  
Matrix rotation and translation  
-0.85000365 0.07274214 0.52173020 188.17274663  
0.46001284 0.58508743 0.66787788 201.23631950  
-0.25667491 0.80770118 -0.53078878 171.60523100  
Axis 0.15878315 0.88395580 0.43978409  
Axis point 82.18601291 0.00000000 16.95155280  
Rotation angle (degrees) 153.87720648  
Shift along axis 283.23192552  
  
Average map value = -0.003218 for 10778 atoms, 10778 outside contour  

> close #3

> close #2

> hide #!1 models

> show #!1 models

> select subtract #1

Nothing selected  

> tile

1 model tiled  

> open /Users/francescappadoo/Downloads/cryosparc_P12_J2773_004_volume_map.mrc

Opened cryosparc_P12_J2773_004_volume_map.mrc as #2, grid size 128,128,128,
pixel 2.96, shown at level 0.117, step 1, values float32  

> tile

2 models tiled  

> surface dust #2 size 29.6

> volume #2 level 0.4

> select add #2

2 models selected  

> view matrix models #2,1,0,0,681.03,0,1,0,-449.37,0,0,1,165.67

> ui mousemode right "rotate selected models"

> view matrix models
> #2,0.026468,-0.12603,-0.99167,1086,0.075081,0.98947,-0.12375,-437.37,0.99683,-0.07118,0.035652,178.49

> transparency sel 50

> select up

3 models selected  

> select down

2 models selected  
Must specify one map, got 0  

> fitmap #1 inMap #2 search 200 resolution 15

Opened Kendall.pdb map 15 as #3, grid size 35,49,41, pixel 5, shown at level
0.0384, step 1, values float32  
Found 65 unique fits from 200 random placements having fraction of points
inside contour >= 0.100 (199 of 200).  
  
Correlations and times found:  
0.5948 (11), 0.579 (14), 0.5596 (5), 0.5595 (22), 0.5591 (6), 0.5559 (5),
0.5531 (11), 0.5446 (3), 0.544 (2), 0.5428 (11), 0.5425 (3), 0.5423 (1),
0.5387 (1), 0.538 (5), 0.5332 (6), 0.528 (1), 0.5259 (1), 0.5215 (9), 0.5201
(1), 0.5191 (1), 0.5187 (2), 0.5119 (1), 0.5003 (2), 0.4992 (1), 0.4989 (2),
0.4886 (1), 0.4877 (1), 0.4874 (5), 0.4848 (2), 0.4848 (1), 0.4823 (1), 0.4773
(3), 0.4769 (4), 0.4743 (1), 0.4725 (2), 0.4717 (2), 0.4712 (2), 0.4699 (1),
0.4671 (1), 0.4663 (1), 0.4654 (1), 0.4636 (2), 0.4634 (7), 0.4624 (1), 0.457
(2), 0.4554 (3), 0.4551 (1), 0.4548 (1), 0.4497 (4), 0.4472 (2), 0.4425 (2),
0.4413 (1), 0.4383 (2), 0.4379 (1), 0.4378 (1), 0.4377 (3), 0.4374 (1), 0.4357
(1), 0.4289 (1), 0.4249 (2), 0.4157 (1), 0.3956 (1), 0.3664 (1), 0.2802 (1),
0.2795 (1)  
  
Best fit found:  
Fit map Kendall.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc using
2303 points  
correlation = 0.5948, correlation about mean = 0.3334, overlap = 285.9  
steps = 932, shift = 41.3, angle = 73.9 degrees  
Position of Kendall.pdb map 15 (#3) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.87426424 0.14844872 0.46219597 177.89462799  
0.46459970 0.53190260 0.70797372 209.31817280  
-0.14074548 0.83369209 -0.53399264 181.59112004  
Axis 0.18159226 0.87091088 0.45666015  
Axis point 71.81317259 0.00000000 23.21714376  
Rotation angle (degrees) 159.74764365  
Shift along axis 297.52718868  
  
Found 65 fits.  

> fitmap #1.6 inMap #2 resolution 15 metric correlation

Fit map Kendall.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc using
2303 points  
correlation = 0.5951, correlation about mean = 0.3342, overlap = 285.7  
steps = 84, shift = 0.828, angle = 2.14 degrees  
  
Position of Kendall.pdb map 15 (#3) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.87774142 0.17996620 0.44405209 180.36951193  
0.46580292 0.53761481 0.70284991 209.40356146  
-0.11223978 0.82376112 -0.55571555 181.07055391  
Axis 0.18981028 0.87328480 0.44871564  
Axis point 71.84585082 0.00000000 25.15268824  
Rotation angle (degrees) 161.42743799  
Shift along axis 298.35412342  
  
Average map value = -0.0134 for 10778 atoms, 10778 outside contour  

> fitmap #1.6 inMap #2 search 200 resolution 15

Found 70 unique fits from 200 random placements having fraction of points
inside contour >= 0.100 (199 of 200).  
  
Correlations and times found:  
0.5948 (14), 0.579 (11), 0.5596 (4), 0.5595 (23), 0.5591 (7), 0.5559 (5),
0.5531 (12), 0.5459 (1), 0.5445 (2), 0.544 (2), 0.5428 (12), 0.5423 (2), 0.542
(3), 0.5402 (1), 0.538 (6), 0.5332 (5), 0.5326 (1), 0.5281 (1), 0.5214 (6),
0.5193 (1), 0.5166 (1), 0.5119 (1), 0.5036 (1), 0.5035 (1), 0.5003 (2), 0.4992
(2), 0.4989 (2), 0.4928 (1), 0.4886 (1), 0.4876 (1), 0.4875 (6), 0.4848 (2),
0.4848 (1), 0.4773 (2), 0.4769 (5), 0.4743 (1), 0.4726 (1), 0.4717 (2), 0.4713
(1), 0.47 (2), 0.4672 (1), 0.4662 (1), 0.4654 (1), 0.4636 (1), 0.4634 (5),
0.4624 (1), 0.4599 (1), 0.457 (1), 0.4554 (1), 0.4554 (2), 0.4552 (1), 0.4548
(2), 0.4511 (1), 0.4497 (3), 0.4472 (2), 0.4413 (1), 0.4405 (1), 0.4383 (3),
0.4378 (1), 0.4377 (2), 0.4356 (1), 0.4288 (1), 0.4233 (2), 0.4066 (1), 0.3956
(2), 0.3356 (1), 0.3249 (1), 0.3123 (1), 0.2802 (1), 0.2796 (1)  
  
Best fit found:  
Fit map Kendall.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc using
2303 points  
correlation = 0.5948, correlation about mean = 0.3334, overlap = 285.9  
steps = 260, shift = 52.9, angle = 77.1 degrees  
Position of Kendall.pdb map 15 (#3) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.87411572 0.14826364 0.46253623 177.94078347  
0.46469472 0.53240157 0.70753617 209.33925839  
-0.14135315 0.83340644 -0.53427792 181.54043474  
Axis 0.18155438 0.87104574 0.45641793  
Axis point 71.85141827 0.00000000 23.20041052  
Rotation angle (degrees) 159.71768355  
Shift along axis 297.50830682  
  
Found 70 fits.  

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.4906, steps = 636  
shifted from previous position = 62.8  
rotated from previous position = 35.4 degrees  
atoms outside contour = 7615, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.86179178 0.42763774 0.27283893 147.70717188  
-0.31224525 -0.87109806 0.37906617 215.99244846  
0.39977236 0.24148344 0.88423280 146.78081492  
Axis -0.18027185 -0.16631829 -0.96945360  
Axis point 78.81262261 84.07554335 0.00000000  
Rotation angle (degrees) 157.56730465  
Shift along axis -204.84813020  
  

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.4906, steps = 48  
shifted from previous position = 0.37  
rotated from previous position = 1.3 degrees  
atoms outside contour = 7629, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.85448778 0.42816103 0.29415804 148.40523984  
-0.30658405 -0.87278755 0.37980020 215.98303204  
0.41935303 0.23435046 0.87705344 147.17782014  
Axis -0.19153388 -0.16486163 -0.96754091  
Axis point 78.18034035 84.35627562 0.00000000  
Rotation angle (degrees) 157.68507696  
Shift along axis -206.43250899  
  

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.4906, steps = 40  
shifted from previous position = 0.0223  
rotated from previous position = 0.146 degrees  
atoms outside contour = 7620, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.85395725 0.42754928 0.29657851 148.46442122  
-0.30541732 -0.87330410 0.37955275 216.01028530  
0.42128064 0.23354160 0.87634513 147.21397313  
Axis -0.19270301 -0.16457973 -0.96735674  
Axis point 78.07984434 84.43172301 0.00000000  
Rotation angle (degrees) 157.73752242  
Shift along axis -206.56888483  
  

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = -0.004741, steps = 76  
shifted from previous position = 9.78  
rotated from previous position = 8.88 degrees  
atoms outside contour = 10778, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.79789300 0.11640909 0.59145233 189.79346595  
0.55223764 0.53451336 0.63978836 207.03384525  
-0.24166201 0.83710470 -0.49076985 176.65496604  
Axis 0.20538639 0.86718793 0.45365353  
Axis point 76.45382627 0.00000000 15.22135585  
Rotation angle (degrees) 151.29147759  
Shift along axis 298.65839562  
  

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = -0.005659, steps = 180  
shifted from previous position = 7.96  
rotated from previous position = 21.3 degrees  
atoms outside contour = 10778, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.91510608 0.07793345 0.39561019 185.31816762  
0.39901037 0.31632323 0.86065694 200.56055427  
-0.05806681 0.94544479 -0.32056560 175.17128763  
Axis 0.15080644 0.80692470 0.57107788  
Axis point 74.77640111 0.00000000 4.02778075  
Rotation angle (degrees) 163.67324881  
Shift along axis 289.82088621  
  

> fitmap #1.6 inMap #2 resolution 15 metric correlation

Fit map Kendall.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc using
2303 points  
correlation = 0.5713, correlation about mean = 0.4103, overlap = 248.4  
steps = 96, shift = 8.33, angle = 14.2 degrees  
  
Position of Kendall.pdb map 15 (#3) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.55621596 0.22526295 0.79992536 205.64912164  
0.82631778 -0.25235758 -0.50350237 203.84925214  
0.08844674 0.94104846 -0.32650395 176.83542626  
Axis 0.84045253 0.41394459 0.34969904  
Axis point 0.00000000 29.20388708 69.91520083  
Rotation angle (degrees) 120.75198081  
Shift along axis 319.05979953  
  
Average map value = -0.01418 for 10778 atoms, 10765 outside contour  

> fitmap #1.6 inMap #2 resolution 15 metric correlation

Fit map Kendall.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc using
2303 points  
correlation = 0.56, correlation about mean = 0.2603, overlap = 267.8  
steps = 52, shift = 1.23, angle = 1.29 degrees  
  
Position of Kendall.pdb map 15 (#3) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.84115312 0.10647669 0.53021156 179.60092264  
-0.50028332 -0.52553310 -0.68813633 177.40566033  
0.20537321 -0.84408382 0.49532231 216.87775327  
Axis -0.22098608 0.46031361 -0.85981192  
Axis point 87.78613591 131.10406675 0.00000000  
Rotation angle (degrees) 159.33859715  
Shift along axis -144.50114055  
  
Average map value = -0.02281 for 10778 atoms, 10778 outside contour  

> fitmap #1.6 inMap #2 resolution 15 metric correlation

Fit map Kendall.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc using
2303 points  
correlation = 0.5601, correlation about mean = 0.3562, overlap = 263.6  
steps = 64, shift = 0.864, angle = 2.11 degrees  
  
Position of Kendall.pdb map 15 (#3) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.77797566 -0.09886450 -0.62046744 198.23592066  
0.46345954 -0.57647455 0.67296538 199.45234213  
-0.42421599 -0.81111206 -0.40266348 159.17547237  
Axis -0.92805447 -0.12272408 0.35164428  
Axis point 0.00000000 143.88943483 68.50045743  
Rotation angle (degrees) 126.91153396  
Shift along axis -152.47819249  
  
Average map value = -0.01475 for 10778 atoms, 10751 outside contour  

> fitmap #1.6 inMap #2 resolution 15 metric correlation

Fit map Kendall.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc using
2303 points  
correlation = 0.5611, correlation about mean = 0.3141, overlap = 258.2  
steps = 96, shift = 5.61, angle = 14.6 degrees  
  
Position of Kendall.pdb map 15 (#3) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.71274708 -0.08168613 -0.69664850 185.08517784  
-0.70141290 -0.07816709 -0.70845601 160.37195084  
0.00341611 0.99358801 -0.11300904 175.37476945  
Axis 0.87646876 -0.36049876 -0.31912874  
Axis point 0.00000000 32.95009561 200.87196003  
Rotation angle (degrees) 103.84018569  
Shift along axis 48.44035874  
  
Average map value = -0.0151 for 10778 atoms, 10778 outside contour  

> fitmap #1.6 inMap #2 resolution 15 metric correlation

Fit map Kendall.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc using
2303 points  
correlation = 0.5541, correlation about mean = 0.2889, overlap = 263.5  
steps = 84, shift = 1.48, angle = 1.6 degrees  
  
Position of Kendall.pdb map 15 (#3) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.92947599 -0.08962228 -0.35783013 203.59839064  
-0.33942590 0.17205505 -0.92476332 172.35373880  
0.14444591 0.98100190 0.12950092 186.64661455  
Axis 0.95930457 -0.25283056 -0.12574358  
Axis point 0.00000000 -5.68536821 226.53442893  
Rotation angle (degrees) 83.36661312  
Shift along axis 128.26695935  
  
Average map value = -0.0163 for 10778 atoms, 10778 outside contour  

> ui mousemode right "translate selected models"

> view matrix models
> #2,0.026468,-0.12603,-0.99167,1043.1,0.075081,0.98947,-0.12375,-496.13,0.99683,-0.07118,0.035652,178.49

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.6452, steps = 172  
shifted from previous position = 39.9  
rotated from previous position = 20.9 degrees  
atoms outside contour = 6308, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.89787581 -0.30655422 -0.31598037 173.22481185  
-0.28021104 0.15564412 -0.94723634 227.68413771  
0.33955986 0.93904164 0.05384922 133.46236825  
Axis 0.94450105 -0.32824347 0.01319061  
Axis point 0.00000000 70.05764427 209.32591948  
Rotation angle (degrees) 86.92262100  
Shift along axis 90.63563488  
  

> view matrix models
> #2,-0.15586,-0.2096,-0.96529,1073.4,0.19242,0.95206,-0.2378,-486.49,0.96886,-0.2228,-0.10805,240.64

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.6452, steps = 120  
shifted from previous position = 13  
rotated from previous position = 0.126 degrees  
atoms outside contour = 6308, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.89366109 -0.12326910 -0.43147963 167.05462046  
-0.38622883 0.27825215 -0.87943336 225.71807731  
0.22846715 0.95256510 0.20105306 130.32840665  
Axis 0.93235447 -0.33586509 -0.13382745  
Axis point 0.00000000 53.12473133 236.93392138  
Rotation angle (degrees) 79.25238427  
Shift along axis 62.50178162  
  

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.6452, steps = 56  
shifted from previous position = 3.9  
rotated from previous position = 0.0675 degrees  
atoms outside contour = 6305, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.91729819 -0.33690508 -0.21227111 167.44899919  
-0.08944131 0.34513222 -0.93428260 212.85233521  
0.38802623 0.87600143 0.28645596 123.40099075  
Axis 0.94128424 -0.31213358 0.12867249  
Axis point 0.00000000 57.01286097 223.62886597  
Rotation angle (degrees) 74.07116491  
Shift along axis 107.05705606  
  

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.6452, steps = 28  
shifted from previous position = 0.083  
rotated from previous position = 0.0484 degrees  
atoms outside contour = 6309, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.91758739 -0.33615601 -0.21220873 167.53370898  
-0.08970054 0.34496636 -0.93431901 212.85313039  
0.38728189 0.87635446 0.28638343 123.38918306  
Axis 0.94149383 -0.31171646 0.12814917  
Axis point 0.00000000 56.98033059 223.63169988  
Rotation angle (degrees) 74.06965143  
Shift along axis 107.19435043  
  

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.6452, steps = 104  
shifted from previous position = 25.1  
rotated from previous position = 0.0246 degrees  
atoms outside contour = 6310, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.96481487 0.25121300 0.07761658 250.19852719  
-0.15829201 -0.31925497 -0.93435534 240.22934986  
-0.20994280 -0.91376587 0.34778698 238.03972372  
Axis 0.04111250 0.57419083 -0.81768860  
Axis point 151.84630984 184.07851199 0.00000000  
Rotation angle (degrees) 165.49857927  
Shift along axis -46.41859204  
  

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.6452, steps = 28  
shifted from previous position = 0.0496  
rotated from previous position = 0.0271 degrees  
atoms outside contour = 6309, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.96492503 0.25087866 0.07732802 250.14635322  
-0.15793905 -0.31947148 -0.93434107 240.24722468  
-0.20970221 -0.91378206 0.34788959 238.04777435  
Axis 0.04112288 0.57412827 -0.81773201  
Axis point 151.78549934 184.11679070 0.00000000  
Rotation angle (degrees) 165.52423524  
Shift along axis -46.43982444  
  

> view matrix models
> #2,-0.089943,-0.28722,-0.95363,1057.8,0.067258,0.95358,-0.29354,-451.63,0.99367,-0.090542,-0.06645,202.83

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.647, steps = 112  
shifted from previous position = 28.7  
rotated from previous position = 13 degrees  
atoms outside contour = 6582, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.96594815 -0.22382108 -0.12980116 114.52700272  
-0.03325870 0.39010184 -0.92017084 221.23699937  
0.25658936 0.89315421 0.36937419 130.20945085  
Axis 0.97291700 -0.20731303 0.10224388  
Axis point 0.00000000 31.02846190 237.63437020  
Rotation angle (degrees) 68.73315039  
Shift along axis 78.87307526  
  

> select subtract #2

Nothing selected  

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.647, steps = 68  
shifted from previous position = 0.891  
rotated from previous position = 0.0208 degrees  
atoms outside contour = 6579, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.96429435 -0.25472638 -0.07246319 112.48357482  
0.02717594 0.36734931 -0.92968593 217.51230085  
0.26343489 0.89452151 0.36115533 129.79439772  
Axis 0.97230180 -0.17903353 0.15025382  
Axis point 0.00000000 33.28721331 228.62911439  
Rotation angle (degrees) 69.73274928  
Shift along axis 89.92809017  
  

> select add #1.6

10778 atoms, 11624 bonds, 336 residues, 1 model selected  

> view matrix models
> #1.6,-0.32232,-0.94356,-0.076205,869.97,-0.041933,0.094654,-0.99463,-273.68,0.9457,-0.31739,-0.070076,289.58

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.647, steps = 72  
shifted from previous position = 11  
rotated from previous position = 0.0234 degrees  
atoms outside contour = 6584, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.96436908 -0.25438644 -0.07266261 112.43659745  
0.02689459 0.36749619 -0.92963606 217.49713378  
0.26319009 0.89455792 0.36124361 129.78788417  
Axis 0.97235394 -0.17902027 0.14993182  
Axis point 0.00000000 33.23838593 228.64743542  
Rotation angle (degrees) 69.72328556  
Shift along axis 89.85110637  
  

> ui mousemode right "rotate selected models"

> view matrix models
> #1.6,0.085691,-0.99002,-0.1119,871.44,-0.25909,0.086308,-0.96199,-276.15,0.96205,0.11143,-0.2491,280.6

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.6452, steps = 104  
shifted from previous position = 11.3  
rotated from previous position = 23.3 degrees  
atoms outside contour = 6309, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.94119561 -0.22104523 -0.25551886 109.62849908  
-0.18537685 0.29441719 -0.93752542 221.26127828  
0.28246474 0.92976196 0.23612752 133.12324185  
Axis 0.96075175 -0.27680189 0.01835200  
Axis point 0.00000000 38.88020021 220.48023257  
Rotation angle (degrees) 76.35707808  
Shift along axis 46.52331000  
  

> ui mousemode right zoom

> ui mousemode right "translate selected models"

> view matrix models
> #1.6,-0.27855,-0.9587,0.057499,868.57,-0.25124,0.01495,-0.96781,-272.57,0.92698,-0.28403,-0.24502,287.18

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.647, steps = 112  
shifted from previous position = 7.14  
rotated from previous position = 13 degrees  
atoms outside contour = 6580, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.96430981 -0.25464845 -0.07253133 112.47524878  
0.02708930 0.36738118 -0.92967587 217.50899460  
0.26338722 0.89453061 0.36116756 129.79303153  
Axis 0.97231268 -0.17904655 0.15016786  
Axis point 0.00000000 33.27652127 228.63376510  
Rotation angle (degrees) 69.73093089  
Shift along axis 89.90761818  
  

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.647, steps = 76  
shifted from previous position = 9.5  
rotated from previous position = 0.0254 degrees  
atoms outside contour = 6583, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.90177494 -0.40732369 0.14453148 114.79477343  
-0.33594765 -0.87097334 -0.35853099 255.52407575  
0.27192130 0.27475921 -0.92226146 198.55518010  
Axis 0.97443195 -0.19601236 0.10982500  
Axis point 0.00000000 123.07919910 116.10966747  
Rotation angle (degrees) 161.03723945  
Shift along axis 83.58013914  
  

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.647, steps = 40  
shifted from previous position = 0.0618  
rotated from previous position = 0.036 degrees  
atoms outside contour = 6579, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.90153695 -0.40769950 0.14495596 114.85530169  
-0.33621201 -0.87090401 -0.35845159 255.51842698  
0.27238333 0.27442138 -0.92222570 198.58474884  
Axis 0.97437007 -0.19618694 0.11006201  
Axis point 0.00000000 123.10238909 116.09522316  
Rotation angle (degrees) 161.04896009  
Shift along axis 83.63882650  
  

> view matrix models
> #1.6,-0.32234,-0.94356,-0.07614,859.15,-0.041869,0.094565,-0.99464,-280.03,0.9457,-0.31742,-0.069988,289.16

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.647, steps = 48  
shifted from previous position = 2.98  
rotated from previous position = 0.0164 degrees  
atoms outside contour = 6579, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.90162688 -0.40758644 0.14471440 114.84597748  
-0.33615873 -0.87090572 -0.35849741 255.51045771  
0.27215135 0.27458385 -0.92224583 198.58375150  
Axis 0.97439333 -0.19614182 0.10993643  
Axis point 0.00000000 123.08869588 116.10845245  
Rotation angle (degrees) 161.04295482  
Shift along axis 83.62045602  
  

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.647, steps = 40  
shifted from previous position = 0.0523  
rotated from previous position = 0.0154 degrees  
atoms outside contour = 6583, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.90171953 -0.40741846 0.14461012 114.80278467  
-0.33598997 -0.87091991 -0.35862113 255.52148135  
0.27205277 0.27478809 -0.92221408 198.55196092  
Axis 0.97441703 -0.19605380 0.10988337  
Axis point 0.00000000 123.07835140 116.10962991  
Rotation angle (degrees) 161.03323789  
Shift along axis 83.58738965  
  

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.647, steps = 48  
shifted from previous position = 0.00833  
rotated from previous position = 0.00482 degrees  
atoms outside contour = 6583, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.90172316 -0.40738506 0.14468152 114.79556078  
-0.33594748 -0.87095069 -0.35858618 255.52452762  
0.27209319 0.27474003 -0.92221647 198.55598661  
Axis 0.97441819 -0.19603207 0.10991189  
Axis point 0.00000000 123.08004155 116.10726581  
Rotation angle (degrees) 161.03584212  
Shift along axis 83.59154523  
  

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.647, steps = 28  
shifted from previous position = 0.049  
rotated from previous position = 0.017 degrees  
atoms outside contour = 6581, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.90171701 -0.40749573 0.14440797 114.83565189  
-0.33613324 -0.87087924 -0.35858562 255.50772619  
0.27188408 0.27480239 -0.92225956 198.57223505  
Axis 0.97441642 -0.19611172 0.10978543  
Axis point 0.00000000 123.07633952 116.12216577  
Rotation angle (degrees) 161.03388494  
Shift along axis 83.59002409  
  

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.647, steps = 40  
shifted from previous position = 0.0284  
rotated from previous position = 0.0486 degrees  
atoms outside contour = 6578, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.90145440 -0.40781389 0.14514748 114.86654078  
-0.33621242 -0.87082719 -0.35863780 255.50720110  
0.27265591 0.27449520 -0.92212318 198.59365911  
Axis 0.97434765 -0.19622661 0.11018968  
Axis point 0.00000000 123.09310174 116.10236234  
Rotation angle (degrees) 161.04042351  
Shift along axis 83.66560369  
  

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.647, steps = 24  
shifted from previous position = 0.00762  
rotated from previous position = 0.00585 degrees  
atoms outside contour = 6580, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.90145051 -0.40781824 0.14515943 114.87002495  
-0.33624077 -0.87085466 -0.35854450 255.50764421  
0.27263381 0.27440156 -0.92215758 198.60023870  
Axis 0.97434707 -0.19623204 0.11018521  
Axis point 0.00000000 123.09846680 116.09857505  
Rotation angle (degrees) 161.04622298  
Shift along axis 83.66729487  
  

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.647, steps = 40  
shifted from previous position = 0.0572  
rotated from previous position = 0.0332 degrees  
atoms outside contour = 6582, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.90167970 -0.40744447 0.14478503 114.81725913  
-0.33598400 -0.87094904 -0.35855596 255.52232646  
0.27219209 0.27465714 -0.92221198 198.56518919  
Axis 0.97440698 -0.19605774 0.10996548  
Axis point 0.00000000 123.08528388 116.10398446  
Rotation angle (degrees) 161.03913140  
Shift along axis 83.61692529  
  

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.647, steps = 24  
shifted from previous position = 0.013  
rotated from previous position = 0.0112 degrees  
atoms outside contour = 6583, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.90173912 -0.40736668 0.14463381 114.80442568  
-0.33593294 -0.87094162 -0.35862182 255.52001133  
0.27205825 0.27479602 -0.92221010 198.55790003  
Axis 0.97442219 -0.19602416 0.10989053  
Axis point 0.00000000 123.07557422 116.11206617  
Rotation angle (degrees) 161.03307413  
Shift along axis 83.59951630  
  

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.647, steps = 40  
shifted from previous position = 0.0568  
rotated from previous position = 0.0211 degrees  
atoms outside contour = 6579, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.90159490 -0.40761395 0.14483608 114.85547372  
-0.33613616 -0.87089471 -0.35854532 255.50922843  
0.27228511 0.27457795 -0.92220810 198.58932413  
Axis 0.97438479 -0.19614569 0.11000523  
Axis point 0.00000000 123.08815588 116.10893488  
Rotation angle (degrees) 161.04147613  
Shift along axis 83.64225738  
  

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.647, steps = 44  
shifted from previous position = 0.0623  
rotated from previous position = 0.0211 degrees  
atoms outside contour = 6583, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.90173979 -0.40737571 0.14460416 114.79879360  
-0.33596349 -0.87094840 -0.35857674 255.52134520  
0.27201828 0.27476115 -0.92223228 198.55602009  
Axis 0.97442255 -0.19603310 0.10987133  
Axis point 0.00000000 123.07828626 116.10942519  
Rotation angle (degrees) 161.03556688  
Shift along axis 83.58750603  
  

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.647, steps = 28  
shifted from previous position = 0.0749  
rotated from previous position = 0.0356 degrees  
atoms outside contour = 6579, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.90150092 -0.40775464 0.14502492 114.86838283  
-0.33622080 -0.87086627 -0.35853504 255.50674832  
0.27249170 0.27445923 -0.92218242 198.59854430  
Axis 0.97436027 -0.19620804 0.11011116  
Axis point 0.00000000 123.09496103 116.10310525  
Rotation angle (degrees) 161.04499119  
Shift along axis 83.65862562  
  

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.647, steps = 40  
shifted from previous position = 0.0519  
rotated from previous position = 0.0122 degrees  
atoms outside contour = 6583, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.90158562 -0.40757343 0.14500780 114.82414226  
-0.33603899 -0.87092016 -0.35857457 255.52073746  
0.27243575 0.27455736 -0.92216974 198.57233189  
Axis 0.97438232 -0.19611006 0.11009063  
Axis point 0.00000000 123.09035146 116.09819966  
Rotation angle (degrees) 161.04115674  
Shift along axis 83.63337929  
  

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.647, steps = 44  
shifted from previous position = 0.0464  
rotated from previous position = 0.0131 degrees  
atoms outside contour = 6580, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.90150005 -0.40775233 0.14503683 114.86520573  
-0.33622571 -0.87087910 -0.35849928 255.51077770  
0.27248852 0.27442196 -0.92219445 198.59392057  
Axis 0.97436021 -0.19620744 0.11011274  
Axis point 0.00000000 123.09896856 116.09831548  
Rotation angle (degrees) 161.04726026  
Shift along axis 83.65469011  
  

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.647, steps = 40  
shifted from previous position = 0.0582  
rotated from previous position = 0.0313 degrees  
atoms outside contour = 6584, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.90171356 -0.40740531 0.14468436 114.81116897  
-0.33597884 -0.87095621 -0.35854339 255.52361112  
0.27208629 0.27469251 -0.92223266 198.55999294  
Axis 0.97441586 -0.19604457 0.10991020  
Axis point 0.00000000 123.08404246 116.10528715  
Rotation angle (degrees) 161.03860231  
Shift along axis 83.60357647  
  

> view matrix models
> #1.6,-0.32202,-0.94366,-0.076248,868.39,-0.042118,0.094738,-0.99461,-285.46,0.9458,-0.31707,-0.070252,295.01

> ui mousemode right "rotate selected models"

> view matrix models
> #1.6,0.034654,-0.94027,0.33865,879.47,0.22693,0.33741,0.9136,-275.53,-0.97329,0.04519,0.22507,237.95

> view matrix models
> #1.6,0.1184,-0.99285,-0.014991,881.39,0.63176,0.063674,0.77254,-260.71,-0.76607,-0.10094,0.63479,247.24

> ui mousemode right "translate selected models"

> view matrix models
> #1.6,0.1184,-0.99285,-0.014991,884.1,0.63176,0.063674,0.77254,-242.17,-0.76607,-0.10094,0.63479,242.72

> ui mousemode right "rotate selected models"

> view matrix models
> #1.6,0.088896,-0.88638,0.45434,883.21,-0.36815,0.3946,0.84188,-274.37,-0.92551,-0.2421,-0.29124,237.48

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.6904, steps = 160  
shifted from previous position = 30.1  
rotated from previous position = 33.7 degrees  
atoms outside contour = 6073, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.94662623 -0.29755527 0.12393430 74.48166371  
0.28839770 -0.61013133 0.73794746 269.39131856  
-0.14396397 0.73430266 0.66338063 215.29763795  
Axis -0.00565698 0.41579682 0.90943994  
Axis point 25.02920379 92.41325892 0.00000000  
Rotation angle (degrees) 161.20697463  
Shift along axis 307.39098382  
  

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.6902, steps = 116  
shifted from previous position = 18.9  
rotated from previous position = 10.6 degrees  
atoms outside contour = 6169, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.90003069 -0.43216636 0.05636518 57.74596184  
-0.23347108 0.58730161 0.77496323 206.84106680  
-0.36801642 0.68433093 -0.62948787 143.20694749  
Axis -0.18989437 0.88917168 0.41630980  
Axis point 54.11771149 0.00000000 16.24408741  
Rotation angle (degrees) 166.19378974  
Shift along axis 232.57004164  
  

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.6901, steps = 72  
shifted from previous position = 5.54  
rotated from previous position = 0.0334 degrees  
atoms outside contour = 6170, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.79543352 -0.33207597 0.50696264 88.71970001  
-0.08771309 0.89078924 0.44587079 224.37168741  
-0.59965990 0.31019324 -0.73769108 93.13230489  
Axis -0.11887210 0.96955279 0.21409533  
Axis point 65.31328637 0.00000000 3.09677226  
Rotation angle (degrees) 145.20184929  
Shift along axis 226.93308970  
  

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.6902, steps = 44  
shifted from previous position = 0.0633  
rotated from previous position = 0.0242 degrees  
atoms outside contour = 6171, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.79554846 -0.33221728 0.50668963 88.67917884  
-0.08774227 0.89062763 0.44618779 224.34917436  
-0.59950314 0.31050584 -0.73768699 93.17912901  
Axis -0.11891681 0.96950934 0.21426718  
Axis point 65.29617206 0.00000000 3.11365626  
Rotation angle (degrees) 145.21552873  
Shift along axis 226.92840486  
  

> view matrix models
> #1.6,0.46811,-0.75452,0.45996,851.68,0.14994,0.58079,0.80013,-240.26,-0.87085,-0.30559,0.38501,246.48

> ui mousemode right "translate selected models"

> view matrix models
> #1.6,0.46811,-0.75452,0.45996,870.75,0.14994,0.58079,0.80013,-251.27,-0.87085,-0.30559,0.38501,258.19

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.6902, steps = 124  
shifted from previous position = 25.5  
rotated from previous position = 4.55 degrees  
atoms outside contour = 6170, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.79543538 -0.33219973 0.50687864 88.68209950  
-0.08770567 0.89067567 0.44609907 224.35152283  
-0.59965853 0.31038678 -0.73761079 93.17432258  
Axis -0.11890781 0.96952093 0.21421974  
Axis point 65.30007487 0.00000000 3.11005135  
Rotation angle (degrees) 145.20361294  
Shift along axis 226.92828293  
  

> view matrix models
> #1.6,0.40955,-0.76605,0.49541,872.85,0.17887,0.59993,0.7798,-250.93,-0.89458,-0.23075,0.38273,257.75

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.6902, steps = 156  
shifted from previous position = 28.3  
rotated from previous position = 0.0299 degrees  
atoms outside contour = 6167, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.79523110 -0.33264381 0.50690793 88.68025924  
-0.08813087 0.89059779 0.44617076 224.33919035  
-0.59986709 0.31013455 -0.73754730 93.16762973  
Axis -0.11916309 0.96949726 0.21418501  
Axis point 65.33227333 0.00000000 3.09736228  
Rotation angle (degrees) 145.19408144  
Shift along axis 226.88392692  
  

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.6902, steps = 44  
shifted from previous position = 0.00461  
rotated from previous position = 0.00864 degrees  
atoms outside contour = 6166, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.79530622 -0.33255661 0.50684729 88.68178213  
-0.08803959 0.89059314 0.44619805 224.34145904  
-0.59978089 0.31024139 -0.73757247 93.16910893  
Axis -0.11910916 0.96949684 0.21421692  
Axis point 65.32450680 0.00000000 3.09869212  
Rotation angle (degrees) 145.19934842  
Shift along axis 226.89392185  
  

> view matrix models
> #1.6,0.40984,-0.76595,0.49532,872.35,0.17865,0.59991,0.77986,-250.48,-0.89449,-0.23113,0.38271,257.37

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.6902, steps = 120  
shifted from previous position = 27.5  
rotated from previous position = 0.04 degrees  
atoms outside contour = 6170, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.79571104 -0.33220445 0.50644269 88.67589983  
-0.08779158 0.89059028 0.44625264 224.34630857  
-0.59928011 0.31062667 -0.73781732 93.17990911  
Axis -0.11891732 0.96950158 0.21430205  
Axis point 65.28980515 0.00000000 3.11998807  
Rotation angle (degrees) 145.23211649  
Shift along axis 226.92764503  
  

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.6902, steps = 28  
shifted from previous position = 0.027  
rotated from previous position = 0.02 degrees  
atoms outside contour = 6166, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.79550415 -0.33240552 0.50663574 88.66357539  
-0.08789814 0.89056277 0.44628655 224.33666668  
-0.59953911 0.31049039 -0.73766426 93.19138752  
Axis -0.11901658 0.96949096 0.21429496  
Axis point 65.30115367 0.00000000 3.11627633  
Rotation angle (degrees) 145.21541885  
Shift along axis 226.91037986  
  

> view matrix models
> #1.6,0.40953,-0.76612,0.49532,872.75,0.17864,0.59977,0.77998,-247.39,-0.89463,-0.23094,0.38249,256.35

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.6903, steps = 168  
shifted from previous position = 26.1  
rotated from previous position = 10.5 degrees  
atoms outside contour = 6072, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.88989708 -0.22134947 0.39885796 87.08236581  
-0.02449384 0.89630406 0.44276280 226.25889174  
-0.45550336 0.38424368 -0.80304013 97.28329832  
Axis -0.06659755 0.97230388 0.22403108  
Axis point 56.57604967 0.00000000 10.34042538  
Rotation angle (degrees) 153.93765484  
Shift along axis 235.98740990  
  

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.6904, steps = 40  
shifted from previous position = 0.04  
rotated from previous position = 0.123 degrees  
atoms outside contour = 6072, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.89060488 -0.21944457 0.39833039 87.06373812  
-0.02296263 0.89646010 0.44252889 226.28973451  
-0.45419791 0.38497160 -0.80343083 97.34292096  
Axis -0.06564710 0.97235311 0.22409793  
Axis point 56.44496843 0.00000000 10.41844984  
Rotation angle (degrees) 153.99917577  
Shift along axis 236.13239266  
  

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.6904, steps = 48  
shifted from previous position = 0.0481  
rotated from previous position = 0.00932 degrees  
atoms outside contour = 6072, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.89062761 -0.21931200 0.39835259 87.09725423  
-0.02288793 0.89652265 0.44240604 226.31384337  
-0.45415710 0.38490149 -0.80348748 97.32087855  
Axis -0.06558953 0.97237017 0.22404075  
Axis point 56.45384721 0.00000000 10.40999205  
Rotation angle (degrees) 154.00027622  
Shift along axis 236.15200601  
  

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.6904, steps = 44  
shifted from previous position = 0.0112  
rotated from previous position = 0.0031 degrees  
atoms outside contour = 6074, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.89063331 -0.21931031 0.39834077 87.08968729  
-0.02286728 0.89650166 0.44244964 226.31130904  
-0.45414696 0.38495133 -0.80346934 97.32859312  
Axis -0.06558371 0.97236455 0.22406685  
Axis point 56.44940220 0.00000000 10.41220331  
Rotation angle (degrees) 154.00083445  
Shift along axis 236.15354084  
  

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.6904, steps = 44  
shifted from previous position = 0.0124  
rotated from previous position = 0.00407 degrees  
atoms outside contour = 6075, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.89062068 -0.21931099 0.39836864 87.08250938  
-0.02288620 0.89652883 0.44239360 226.31256738  
-0.45417078 0.38488767 -0.80348637 97.31887194  
Axis -0.06558893 0.97237174 0.22403411  
Axis point 56.44650931 0.00000000 10.41129365  
Rotation angle (degrees) 153.99934684  
Shift along axis 236.15104472  
  

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.6904, steps = 40  
shifted from previous position = 0.0432  
rotated from previous position = 0.0197 degrees  
atoms outside contour = 6074, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.89058360 -0.21960562 0.39828921 87.04836000  
-0.02322385 0.89652256 0.44238871 226.28278929  
-0.45422635 0.38473424 -0.80352844 97.32759414  
Axis -0.06576007 0.97237013 0.22399095  
Axis point 56.45163235 0.00000000 10.42400202  
Rotation angle (degrees) 154.00008249  
Shift along axis 236.10681909  
  

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.6904, steps = 40  
shifted from previous position = 0.0414  
rotated from previous position = 0.0237 degrees  
atoms outside contour = 6072, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.89072433 -0.21925840 0.39816578 87.08125145  
-0.02293502 0.89653103 0.44238661 226.29943712  
-0.45396500 0.38491250 -0.80359076 97.33712838  
Axis -0.06558421 0.97237386 0.22402632  
Axis point 56.44464580 0.00000000 10.42979500  
Rotation angle (degrees) 154.01280181  
Shift along axis 236.14258023  
  

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.6904, steps = 40  
shifted from previous position = 0.0375  
rotated from previous position = 0.0227 degrees  
atoms outside contour = 6072, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.89057669 -0.21959341 0.39831140 87.05174054  
-0.02316389 0.89649184 0.44245410 226.28785429  
-0.45424296 0.38481279 -0.80348143 97.33210021  
Axis -0.06574150 0.97236164 0.22403325  
Axis point 56.45086003 0.00000000 10.41972513  
Rotation angle (degrees) 153.99856634  
Shift along axis 236.11634418  
  

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.6904, steps = 40  
shifted from previous position = 0.0211  
rotated from previous position = 0.033 degrees  
atoms outside contour = 6069, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.89042465 -0.22008561 0.39837965 87.04435754  
-0.02364608 0.89649633 0.44241950 226.26905676  
-0.45451610 0.38452103 -0.80346665 97.31439939  
Axis -0.06600836 0.97236159 0.22395499  
Axis point 56.48142561 0.00000000 10.41052388  
Rotation angle (degrees) 153.98737401  
Shift along axis 236.06372973  
  

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.6904, steps = 44  
shifted from previous position = 0.0101  
rotated from previous position = 0.0318 degrees  
atoms outside contour = 6073, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.89057102 -0.21959074 0.39832554 87.03983518  
-0.02317934 0.89651323 0.44240995 226.28991533  
-0.45425328 0.38476448 -0.80349874 97.31711965  
Axis -0.06574474 0.97236736 0.22400747  
Axis point 56.44441154 0.00000000 10.41625246  
Rotation angle (degrees) 153.99792925  
Shift along axis 236.11427773  
  

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.6904, steps = 40  
shifted from previous position = 0.0319  
rotated from previous position = 0.0128 degrees  
atoms outside contour = 6076, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.89062161 -0.21938249 0.39832718 87.06273537  
-0.02298384 0.89653129 0.44238354 226.31155052  
-0.45416402 0.38484118 -0.80351246 97.31056348  
Axis -0.06563425 0.97237259 0.22401716  
Axis point 56.44118823 0.00000000 10.41117230  
Rotation angle (degrees) 154.00095176  
Shift along axis 236.14408753  
  

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.6904, steps = 40  
shifted from previous position = 0.0371  
rotated from previous position = 0.0283 degrees  
atoms outside contour = 6069, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.89050017 -0.21985090 0.39834044 87.05069070  
-0.02339961 0.89647743 0.44247089 226.27701200  
-0.45438088 0.38469931 -0.80345779 97.32640190  
Axis -0.06587686 0.97235710 0.22401317  
Axis point 56.46754775 0.00000000 10.41410360  
Rotation angle (degrees) 153.99296327  
Shift along axis 236.08982968  
  

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.6904, steps = 40  
shifted from previous position = 0.0482  
rotated from previous position = 0.0159 degrees  
atoms outside contour = 6074, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.89054501 -0.21959775 0.39837982 87.08350652  
-0.02322509 0.89656864 0.44229526 226.30005570  
-0.45430194 0.38463135 -0.80353497 97.30297407  
Axis -0.06575882 0.97238203 0.22393965  
Axis point 56.46889332 0.00000000 10.40947495  
Rotation angle (degrees) 153.99497645  
Shift along axis 236.11359245  
  

> view matrix models
> #1.6,0.23701,-0.81175,0.53375,866.86,0.15751,0.57424,0.80339,-246.79,-0.95865,-0.10634,0.26396,254.8

> select add #1

10778 atoms, 11624 bonds, 336 residues, 2 models selected  

> select subtract #1

Nothing selected  

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.6904, steps = 148  
shifted from previous position = 24.7  
rotated from previous position = 0.0403 degrees  
atoms outside contour = 6073, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.89080598 -0.21901569 0.39811669 87.05399435  
-0.02279620 0.89660603 0.44224177 226.29447618  
-0.45381175 0.38487599 -0.80369480 97.34074683  
Axis -0.06547757 0.97239498 0.22396581  
Axis point 56.41860650 0.00000000 10.44972924  
Rotation angle (degrees) 154.02003977  
Shift along axis 236.14852925  
  

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.6904, steps = 48  
shifted from previous position = 0.0513  
rotated from previous position = 0.0457 degrees  
atoms outside contour = 6071, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.89084851 -0.21854913 0.39827788 87.09437585  
-0.02207532 0.89647240 0.44254914 226.33959276  
-0.45376390 0.38545205 -0.80344571 97.35524450  
Axis -0.06515974 0.97235826 0.22421780  
Axis point 56.39712383 0.00000000 10.42213042  
Rotation angle (degrees) 154.01527070  
Shift along axis 236.23690420  
  

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.6904, steps = 44  
shifted from previous position = 0.0229  
rotated from previous position = 0.0422 degrees  
atoms outside contour = 6072, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.89068017 -0.21916605 0.39831538 87.08874007  
-0.02272185 0.89649447 0.44247169 226.31658424  
-0.45406235 0.38505022 -0.80346977 97.33374806  
Axis -0.06550443 0.97236301 0.22409674  
Axis point 56.43850573 0.00000000 10.41457194  
Rotation angle (degrees) 154.00439593  
Shift along axis 236.16935256  
  

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.6904, steps = 52  
shifted from previous position = 3.06  
rotated from previous position = 0.0293 degrees  
atoms outside contour = 6070, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.96714169 -0.10724217 0.23051277 68.27453277  
0.00014136 0.90645355 0.42230529 230.03148137  
-0.25423807 0.40846156 -0.87665394 123.41193000  
Axis -0.02787167 0.97595209 0.21619597  
Axis point 41.91489300 0.00000000 31.36576270  
Rotation angle (degrees) 165.62024413  
Shift along axis 249.27794045  
  

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.6904, steps = 36  
shifted from previous position = 0.036  
rotated from previous position = 0.0204 degrees  
atoms outside contour = 6073, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.96710069 -0.10757189 0.23053119 68.25050344  
-0.00017261 0.90647438 0.42226057 230.00485793  
-0.25439399 0.40832862 -0.87667063 123.42321022  
Axis -0.02803935 0.97595723 0.21615107  
Axis point 41.92585353 0.00000000 31.37694412  
Rotation angle (degrees) 165.61503834  
Shift along axis 249.23926261  
  

> ui mousemode right "move picked models"

> view matrix models
> #2,0.10772,-0.50817,-0.85449,1022.7,0.0025804,0.85963,-0.5109,-384.76,0.99418,0.052831,0.093913,144.2

> view matrix models
> #1.6,0.2364,-0.81203,0.5336,849.56,0.1579,0.57397,0.80351,-242.47,-0.95874,-0.10569,0.26391,245.61

> fitmap #1.6 inMap #2

Fit molecule Kendall.pdb (#1.6) to map cryosparc_P12_J2773_004_volume_map.mrc
(#2) using 10778 atoms  
average map value = 0.6902, steps = 124  
shifted from previous position = 26.3  
rotated from previous position = 10.7 degrees  
atoms outside contour = 6167, contour level = 0.4  
  
Position of Kendall.pdb (#1.6) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.84465104 -0.31070787 0.43591891 72.82528557  
-0.10190289 0.89275224 0.43887249 230.58054040  
-0.52552877 0.32627264 -0.78572620 97.24432703  
Axis -0.11370475 0.97088200 0.21085390  
Axis point 56.39118668 0.00000000 9.98394091  
Rotation angle (degrees) 150.32092971  
Shift along axis 236.09026105  
  

> open
> /Users/francescappadoo/Downloads/rnacomposer-2024-07-05-171619/RNAFramework.pdb

Chain information for RNAFramework.pdb #4  
---  
Chain | Description  
A | No description available  
  

> hide #!1 models

> hide #1.6 models

> tile

2 models tiled  

> tile

2 models tiled  

> close #1

> close #3

> select add #4

10778 atoms, 11624 bonds, 336 residues, 1 model selected  

> select subtract #4

Nothing selected  

> select add #2

2 models selected  

> ui mousemode right "rotate selected models"

> view matrix models
> #2,0.12374,-0.38118,-0.91618,1007.9,0.32666,0.88746,-0.32512,-488.49,0.937,-0.25905,0.23434,186.13

> select subtract #2

Nothing selected  

> select add #4

10778 atoms, 11624 bonds, 336 residues, 1 model selected  

> view matrix models
> #4,-0.75621,-0.38594,0.52839,996.43,-0.57473,0.0057607,-0.81833,-329.27,0.31278,-0.92251,-0.22617,352.6

> view matrix models
> #4,0.30182,-0.15225,0.94113,998.93,-0.94641,0.07118,0.31502,-316.95,-0.11495,-0.98578,-0.1226,355.94

> view matrix models
> #4,0.38574,-0.077279,0.91937,998.94,0.83267,-0.39997,-0.38298,-331.5,0.39732,0.91326,-0.089935,366.15

> view matrix models
> #4,-0.58343,0.12432,-0.8026,987.08,0.36291,-0.84417,-0.39456,-332.43,-0.72657,-0.52147,0.44739,365.96

> view matrix models
> #4,0.053127,-0.12639,0.99056,1001.5,-0.57323,-0.8161,-0.073384,-326.64,0.81767,-0.56392,-0.11581,355.82

> view matrix models
> #4,0.56123,-0.020439,0.82741,999.57,-0.81954,0.12599,0.559,-314.45,-0.11567,-0.99182,0.053958,357.73

> select subtract #4

Nothing selected  

> select #4:77-79

97 atoms, 104 bonds, 3 residues, 1 model selected  

> color sel red

> select #4:63-68

189 atoms, 203 bonds, 6 residues, 1 model selected  

> color sel orange

> select up

10778 atoms, 11624 bonds, 336 residues, 1 model selected  

> select down

189 atoms, 203 bonds, 6 residues, 1 model selected  

> select #4:85-99

481 atoms, 518 bonds, 15 residues, 1 model selected  

> color sel magenta

> select add #4

10778 atoms, 11624 bonds, 336 residues, 1 model selected  

> select subtract #4

Nothing selected  

> select add #4

10778 atoms, 11624 bonds, 336 residues, 1 model selected  

> fitmap #4 inMap #2 search 200 resolution 15

Opened RNAFramework.pdb map 15 as #1, grid size 43,37,50, pixel 5, shown at
level 0.0376, step 1, values float32  
Found 52 unique fits from 200 random placements having fraction of points
inside contour >= 0.100 (199 of 200).  
  
Correlations and times found:  
0.5906 (26), 0.5732 (22), 0.5457 (5), 0.54 (23), 0.5399 (20), 0.5393 (9),
0.5316 (4), 0.519 (8), 0.518 (7), 0.5165 (6), 0.511 (5), 0.5091 (3), 0.5041
(4), 0.5019 (1), 0.4949 (3), 0.4945 (1), 0.4901 (2), 0.4892 (3), 0.4882 (4),
0.4836 (3), 0.4726 (1), 0.4676 (1), 0.467 (1), 0.4614 (1), 0.4518 (1), 0.447
(2), 0.4439 (1), 0.4437 (1), 0.4378 (3), 0.4364 (1), 0.4357 (1), 0.4331 (1),
0.4259 (1), 0.4253 (2), 0.4245 (2), 0.4245 (1), 0.4232 (2), 0.4227 (2), 0.4189
(2), 0.4187 (1), 0.4166 (1), 0.416 (1), 0.4155 (1), 0.4111 (1), 0.4067 (1),
0.4006 (1), 0.3973 (1), 0.3874 (1), 0.3822 (1), 0.3625 (1), 0.3084 (1), 0.2942
(1)  
  
Best fit found:  
Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5906, correlation about mean = 0.3429, overlap = 279.2  
steps = 260, shift = 48.2, angle = 75.3 degrees  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.49213241 0.86363041 -0.10930741 190.58545824  
0.67214664 -0.45677203 -0.58273338 199.08721773  
-0.55319484 0.21331138 -0.80527862 184.27189919  
Axis 0.85473295 0.47661291 -0.20560086  
Axis point 0.00000000 13.24287442 128.68292438  
Rotation angle (degrees) 152.24649187  
Shift along axis 219.90074873  
  
Found 52 fits.  

> transparency #2.1 0

> transparency #2.1 50

> view matrix models
> #4,0.12829,-0.16813,0.97738,785.79,0.92169,-0.34359,-0.18009,-309.29,0.36609,0.92395,0.11088,358.09

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5907, correlation about mean = 0.3438, overlap = 279.1  
steps = 104, shift = 0.932, angle = 20 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.49557426 0.86141054 -0.11125620 190.63323180  
0.67123949 -0.46112305 -0.58034737 199.42361981  
-0.55122014 0.21292567 -0.80673351 184.20431058  
Axis 0.85589840 0.47469713 -0.20518420  
Axis point 0.00000000 13.92851405 128.58413978  
Rotation angle (degrees) 152.39228070  
Shift along axis 220.03268383  
  
Average map value = 0.6806 for 10778 atoms, 6422 outside contour  

> select subtract #4

Nothing selected  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2644, overlap = 254.5  
steps = 28, shift = 0.551, angle = 0.629 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53426205 -0.83762965 -0.11375657 193.08692207  
-0.83144311 0.54499509 -0.10808656 181.36923804  
0.15253328 0.03683557 -0.98761162 190.53399704  
Axis 0.47792145 -0.87816562 0.02040186  
Axis point 137.56875120 -0.00000000 107.06580801  
Rotation angle (degrees) 171.27934831  
Shift along axis -63.10459932  
  
Average map value = 0.621 for 10778 atoms, 6738 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5738, correlation about mean = 0.338, overlap = 267.9  
steps = 44, shift = 1.2, angle = 1.07 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.49204553 -0.84747270 0.19920129 185.91600738  
-0.72036694 0.52483354 0.45345478 169.57192192  
-0.48883807 0.07962238 -0.86873332 188.84320536  
Axis -0.47124467 0.86732686 0.16022665  
Axis point 159.82460844 -0.00000000 51.55326710  
Rotation angle (degrees) 156.63147660  
Shift along axis 89.72006820  
  
Average map value = 0.6535 for 10778 atoms, 6448 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.4974, correlation about mean = 0.2314, overlap = 216.8  
steps = 112, shift = 7.66, angle = 14.8 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.34286674 -0.90684473 -0.24510197 188.65608064  
-0.90808775 0.25317536 0.33358488 199.36691872  
-0.24045591 0.33694926 -0.91030001 188.27787194  
Axis 0.57320547 -0.79157138 -0.21177876  
Axis point 166.35550900 0.00000000 67.69183606  
Rotation angle (degrees) 179.83185341  
Shift along axis -89.54770295  
  
Average map value = 0.5351 for 10778 atoms, 7329 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.4974, correlation about mean = 0.2314, overlap = 216.8  
steps = 28, shift = 0.0316, angle = 0.0581 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.34379833 -0.90656923 -0.24481603 188.68199209  
-0.90774951 0.25410462 0.33379884 199.36857661  
-0.24040287 0.33699112 -0.91029853 188.28022119  
Axis 0.57279911 -0.79186480 -0.21178128  
Axis point 166.29915979 0.00000000 67.69110009  
Rotation angle (degrees) 179.84034148  
Shift along axis -89.67030781  
  
Average map value = 0.535 for 10778 atoms, 7329 outside contour  

> select down

Nothing selected  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5907, correlation about mean = 0.3438, overlap = 279.1  
steps = 48, shift = 0.333, angle = 0.291 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.49553092 0.86143122 -0.11128898 190.63835765  
0.67124110 -0.46110299 -0.58036137 199.42077113  
-0.55125712 0.21288527 -0.80671885 184.20461135  
Axis 0.85588534 0.47471020 -0.20520847  
Axis point 0.00000000 13.92280110 128.58716013  
Rotation angle (degrees) 152.39281897  
Shift along axis 220.03130279  
  
Average map value = 0.6806 for 10778 atoms, 6423 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5907, correlation about mean = 0.3438, overlap = 279.1  
steps = 40, shift = 0.00963, angle = 0.0234 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.49553486 0.86148049 -0.11088932 190.62978591  
0.67132597 -0.46087039 -0.58044796 199.42052790  
-0.55115022 0.21318932 -0.80671160 184.20192908  
Axis 0.85587646 0.47478736 -0.20506695  
Axis point 0.00000000 13.90078186 128.57243195  
Rotation angle (degrees) 152.37775179  
Shift along axis 220.06416257  
  
Average map value = 0.6806 for 10778 atoms, 6420 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5907, correlation about mean = 0.3438, overlap = 279.1  
steps = 40, shift = 0.0419, angle = 0.0288 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.49549535 0.86156528 -0.11040608 190.59061958  
0.67143927 -0.46054968 -0.58057145 199.43104294  
-0.55104772 0.21353949 -0.80668901 184.19384516  
Axis 0.85585163 0.47490074 -0.20490797  
Axis point 0.00000000 13.88411558 128.55322522  
Rotation angle (degrees) 152.35898627  
Shift along axis 220.08445578  
  
Average map value = 0.6806 for 10778 atoms, 6421 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5907, correlation about mean = 0.3438, overlap = 279.1  
steps = 40, shift = 0.014, angle = 0.00719 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.49545178 0.86160441 -0.11029614 190.57719486  
0.67148558 -0.46045057 -0.58059650 199.43485872  
-0.55103046 0.21359531 -0.80668602 184.19167084  
Axis 0.85583571 0.47494341 -0.20487555  
Axis point 0.00000000 13.88019202 128.54850217  
Rotation angle (degrees) 152.35537229  
Shift along axis 220.08667083  
  
Average map value = 0.6806 for 10778 atoms, 6420 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5907, correlation about mean = 0.3438, overlap = 279.1  
steps = 40, shift = 0.0535, angle = 0.0421 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.49546873 0.86150261 -0.11101290 190.62679580  
0.67131748 -0.46088518 -0.58044604 199.42162855  
-0.55122001 0.21306797 -0.80669598 184.20180954  
Axis 0.85585868 0.47479322 -0.20512756  
Axis point 0.00000000 13.90328353 128.57847260  
Rotation angle (degrees) 152.38178627  
Shift along axis 220.04876751  
  
Average map value = 0.6806 for 10778 atoms, 6420 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5907, correlation about mean = 0.3438, overlap = 279.1  
steps = 28, shift = 0.0762, angle = 0.0689 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.49534576 0.86172095 -0.10986104 190.55214102  
0.67160685 -0.46009980 -0.58073430 199.42311964  
-0.55097799 0.21388085 -0.80664620 184.19292189  
Axis 0.85579107 0.47507771 -0.20475063  
Axis point 0.00000000 13.84343076 128.53623951  
Rotation angle (degrees) 152.33780763  
Shift along axis 220.10068117  
  
Average map value = 0.6806 for 10778 atoms, 6417 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5907, correlation about mean = 0.3438, overlap = 279.1  
steps = 28, shift = 0.109, angle = 0.112 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.49567425 0.86129481 -0.11170565 190.65987195  
0.67107783 -0.46146200 -0.58026483 199.41939503  
-0.55132703 0.21265915 -0.80673071 184.20516521  
Axis 0.85593915 0.47455892 -0.20533388  
Axis point 0.00000000 13.95254198 128.60077126  
Rotation angle (degrees) 152.40688881  
Shift along axis 220.00593978  
  
Average map value = 0.6806 for 10778 atoms, 6424 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5907, correlation about mean = 0.3438, overlap = 279.1  
steps = 28, shift = 0.0802, angle = 0.0597 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.49556897 0.86148531 -0.11069931 190.58354008  
0.67135683 -0.46078795 -0.58047771 199.43696108  
-0.55108196 0.21334801 -0.80671628 184.19388792  
Axis 0.85588239 0.47480920 -0.20499161  
Axis point 0.00000000 13.91527365 128.56018150  
Rotation angle (degrees) 152.37084044  
Shift along axis 220.05339747  
  
Average map value = 0.6806 for 10778 atoms, 6420 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5907, correlation about mean = 0.3438, overlap = 279.1  
steps = 40, shift = 0.0455, angle = 0.0116 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.49545507 0.86153019 -0.11085972 190.62456514  
0.67135360 -0.46078246 -0.58048581 199.42112704  
-0.55118830 0.21317857 -0.80668843 184.20054765  
Axis 0.85585045 0.47482968 -0.20507752  
Axis point 0.00000000 13.89274324 128.57330307  
Rotation angle (degrees) 152.37581680  
Shift along axis 220.06179864  
  
Average map value = 0.6806 for 10778 atoms, 6420 outside contour  

> fitmap #4 inMap #2

Fit molecule RNAFramework.pdb (#4) to map
cryosparc_P12_J2773_004_volume_map.mrc (#2) using 10778 atoms  
average map value = 0.6819, steps = 44  
shifted from previous position = 1.51  
rotated from previous position = 1.92 degrees  
atoms outside contour = 6485, contour level = 0.4  
  
Position of RNAFramework.pdb (#4) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.47586908 0.87302436 -0.10666280 190.17563639  
0.66779240 -0.43756952 -0.60215126 197.97097538  
-0.57236514 0.21531657 -0.79122486 183.48589131  
Axis 0.84892958 0.48362576 -0.21313070  
Axis point 0.00000000 10.06209800 129.59434995  
Rotation angle (degrees) 151.21856064  
Shift along axis 218.08311035  
  

> fitmap #4 inMap #2

Fit molecule RNAFramework.pdb (#4) to map
cryosparc_P12_J2773_004_volume_map.mrc (#2) using 10778 atoms  
average map value = 0.6819, steps = 40  
shifted from previous position = 0.0508  
rotated from previous position = 0.0232 degrees  
atoms outside contour = 6490, contour level = 0.4  
  
Position of RNAFramework.pdb (#4) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.47582375 0.87300002 -0.10706355 190.22429268  
0.66768352 -0.43776179 -0.60213224 197.96036903  
-0.57252982 0.21502426 -0.79118520 183.49280551  
Axis 0.84892403 0.48356160 -0.21329832  
Axis point 0.00000000 10.05813235 129.61820123  
Rotation angle (degrees) 151.23034090  
Shift along axis 218.07329870  
  

> fitmap #4 inMap #2

Fit molecule RNAFramework.pdb (#4) to map
cryosparc_P12_J2773_004_volume_map.mrc (#2) using 10778 atoms  
average map value = 0.6819, steps = 40  
shifted from previous position = 0.0477  
rotated from previous position = 0.0405 degrees  
atoms outside contour = 6485, contour level = 0.4  
  
Position of RNAFramework.pdb (#4) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.47580870 0.87309067 -0.10638904 190.17777960  
0.66779334 -0.43732346 -0.60232894 197.96334675  
-0.57241423 0.21554746 -0.79112647 183.48337172  
Axis 0.84889817 0.48370137 -0.21308419  
Axis point 0.00000000 10.02601695 129.59328148  
Rotation angle (degrees) 151.20166306  
Shift along axis 218.09930669  
  

> select add #4

10778 atoms, 11624 bonds, 336 residues, 1 model selected  

> view matrix models
> #4,0.27513,-0.45003,0.84958,783.87,-0.64636,-0.74074,-0.18306,-308.72,0.7117,-0.49877,-0.49468,341.97

> view matrix models
> #4,0.069475,-0.55896,0.82628,783.57,-0.99741,-0.023377,0.06805,-301.1,-0.018721,-0.82886,-0.55914,341.36

> fitmap #4 inMap #2

Fit molecule RNAFramework.pdb (#4) to map
cryosparc_P12_J2773_004_volume_map.mrc (#2) using 10778 atoms  
average map value = 0.4604, steps = 244  
shifted from previous position = 20.6  
rotated from previous position = 28.4 degrees  
atoms outside contour = 7943, contour level = 0.4  
  
Position of RNAFramework.pdb (#4) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.36836019 -0.75755814 -0.53890285 196.52744721  
-0.64523251 0.62564526 -0.43845510 221.62295699  
0.66931734 0.18620824 -0.71926401 181.30282136  
Axis 0.45770347 -0.88528736 0.08230326  
Axis point 113.51383133 0.00000000 154.01711846  
Rotation angle (degrees) 136.96941067  
Shift along axis -91.32689531  
  

> undo

> ui mousemode right "translate selected models"

> view matrix models
> #4,0.27513,-0.45003,0.84958,793.85,-0.64636,-0.74074,-0.18306,-328.56,0.7117,-0.49877,-0.49468,343.72

> fitmap #4 inMap #2

Fit molecule RNAFramework.pdb (#4) to map
cryosparc_P12_J2773_004_volume_map.mrc (#2) using 10778 atoms  
average map value = 0.5555, steps = 136  
shifted from previous position = 20.7  
rotated from previous position = 41.2 degrees  
atoms outside contour = 7364, contour level = 0.4  
  
Position of RNAFramework.pdb (#4) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.04637256 -0.93570188 -0.34973049 185.21851231  
-0.96501570 -0.04848232 0.25767054 196.48875379  
-0.25805855 0.34944427 -0.90071879 181.80449057  
Axis 0.69009704 -0.68933168 -0.22042665  
Axis point 0.00000000 186.62025567 124.42832236  
Rotation angle (degrees) 176.18739841  
Shift along axis -47.70173156  
  

> view matrix models
> #4,0.59854,-0.41746,0.68372,806.55,-0.78766,-0.4623,0.40727,-318.8,0.14607,-0.78231,-0.60552,347.56

> fitmap #4 inMap #2

Fit molecule RNAFramework.pdb (#4) to map
cryosparc_P12_J2773_004_volume_map.mrc (#2) using 10778 atoms  
average map value = 0.5555, steps = 80  
shifted from previous position = 18.7  
rotated from previous position = 0.082 degrees  
atoms outside contour = 7360, contour level = 0.4  
  
Position of RNAFramework.pdb (#4) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.04770402 -0.93582291 -0.34922721 185.20943775  
-0.96492780 -0.04718166 0.25824052 196.50843285  
-0.25814451 0.34929817 -0.90075083 181.81681679  
Axis 0.68961997 -0.68980973 -0.22042422  
Axis point 186.72977148 0.00000000 64.73958526  
Rotation angle (degrees) 176.21456982  
Shift along axis -47.90613196  
  

> fitmap #4 inMap #2

Fit molecule RNAFramework.pdb (#4) to map
cryosparc_P12_J2773_004_volume_map.mrc (#2) using 10778 atoms  
average map value = 0.5554, steps = 40  
shifted from previous position = 0.0424  
rotated from previous position = 0.0513 degrees  
atoms outside contour = 7360, contour level = 0.4  
  
Position of RNAFramework.pdb (#4) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.04858968 -0.93579628 -0.34917648 185.24605231  
-0.96491817 -0.04632738 0.25843109 196.51206614  
-0.25801528 0.34948383 -0.90071584 181.82216209  
Axis 0.68929813 -0.69011926 -0.22046200  
Axis point 186.66063176 0.00000000 64.75245261  
Rotation angle (degrees) 176.21300438  
Shift along axis -48.01188158  
  

> fitmap #4 inMap #2

Fit molecule RNAFramework.pdb (#4) to map
cryosparc_P12_J2773_004_volume_map.mrc (#2) using 10778 atoms  
average map value = 0.5555, steps = 28  
shifted from previous position = 0.0671  
rotated from previous position = 0.0638 degrees  
atoms outside contour = 7358, contour level = 0.4  
  
Position of RNAFramework.pdb (#4) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.04749141 -0.93578938 -0.34934603 185.18720167  
-0.96498546 -0.04734108 0.25799579 196.50373294  
-0.25796813 0.34936644 -0.90077488 181.83598705  
Axis 0.68969435 -0.68974911 -0.22038117  
Axis point 186.72088124 0.00000000 64.77046441  
Rotation angle (degrees) 176.20194886  
Shift along axis -47.88893610  
  

> view matrix models
> #4,0.59831,-0.41783,0.6837,790.24,-0.78803,-0.46129,0.4077,-319.17,0.14503,-0.78271,-0.60526,352.64

> fitmap #4 inMap #2

Fit molecule RNAFramework.pdb (#4) to map
cryosparc_P12_J2773_004_volume_map.mrc (#2) using 10778 atoms  
average map value = 0.5554, steps = 56  
shifted from previous position = 6.67  
rotated from previous position = 0.151 degrees  
atoms outside contour = 7354, contour level = 0.4  
  
Position of RNAFramework.pdb (#4) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.05001978 -0.93592005 -0.34864242 185.22657624  
-0.96488193 -0.04484877 0.25882692 196.52775971  
-0.25787748 0.34934524 -0.90080906 181.85105838  
Axis 0.68878296 -0.69065951 -0.22038030  
Axis point 186.53328180 0.00000000 64.77215039  
Rotation angle (degrees) 176.23244346  
Shift along axis -48.22924819  
  

> color zone #2 near sel & #4 distance 17.8

[Repeated 1 time(s)]

> undo

[Repeated 1 time(s)]

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.4974, correlation about mean = 0.2314, overlap = 216.8  
steps = 148, shift = 8.67, angle = 18.1 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.34393603 -0.90655616 -0.24467078 188.67238303  
-0.90774593 0.25434515 0.33362524 199.36333650  
-0.24021918 0.33684466 -0.91040116 188.29519713  
Axis 0.57273620 -0.79194246 -0.21166101  
Axis point 166.27618169 0.00000000 67.71883032  
Rotation angle (degrees) 179.83896641  
Shift along axis -89.67953968  
  
Average map value = 0.535 for 10778 atoms, 7329 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.4974, correlation about mean = 0.2313, overlap = 216.8  
steps = 28, shift = 0.0238, angle = 0.0215 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.34426821 -0.90643838 -0.24463998 188.69288803  
-0.90759804 0.25461249 0.33382360 199.36744339  
-0.24030212 0.33695963 -0.91033673 188.28841523  
Axis 0.57259115 -0.79202689 -0.21173751  
Axis point 166.26586958 0.00000000 67.70264612  
Rotation angle (degrees) 179.84309803  
Shift along axis -89.72821911  
  
Average map value = 0.535 for 10778 atoms, 7329 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5907, correlation about mean = 0.3438, overlap = 279.1  
steps = 60, shift = 0.349, angle = 0.283 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.49558516 0.86145384 -0.11087150 190.59013794  
0.67132419 -0.46090734 -0.58042069 199.43649211  
-0.55110715 0.21321717 -0.80673366 184.19599250  
Axis 0.85589240 0.47476862 -0.20504379  
Axis point 0.00000000 13.92633107 128.56553524  
Rotation angle (degrees) 152.37828891  
Shift along axis 220.04259402  
  
Average map value = 0.6806 for 10778 atoms, 6423 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5907, correlation about mean = 0.3438, overlap = 279.1  
steps = 40, shift = 0.00537, angle = 0.0081 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.49552837 0.86149756 -0.11078552 190.58486397  
0.67133016 -0.46079571 -0.58050242 199.43564268  
-0.55115095 0.21328177 -0.80668667 184.19375225  
Axis 0.85587059 0.47480893 -0.20504148  
Axis point 0.00000000 13.91329361 128.56630028  
Rotation angle (degrees) 152.37199671  
Shift along axis 220.04244401  
  
Average map value = 0.6806 for 10778 atoms, 6421 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5907, correlation about mean = 0.3438, overlap = 279.1  
steps = 40, shift = 0.0431, angle = 0.00948 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.49542519 0.86157030 -0.11068128 190.62385985  
0.67139776 -0.46064986 -0.58053998 199.41954140  
-0.55116136 0.21330298 -0.80667394 184.19980846  
Axis 0.85583633 0.47487838 -0.20502364  
Axis point 0.00000000 13.87767474 128.56832526  
Rotation angle (degrees) 152.36857541  
Shift along axis 220.07753973  
  
Average map value = 0.6806 for 10778 atoms, 6420 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5907, correlation about mean = 0.3438, overlap = 279.1  
steps = 40, shift = 0.0374, angle = 0.0097 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.49552885 0.86152680 -0.11055578 190.59024981  
0.67139852 -0.46066784 -0.58052484 199.43283617  
-0.55106724 0.21343983 -0.80670205 184.19438913  
Axis 0.85586606 0.47485590 -0.20495161  
Axis point 0.00000000 13.89798089 128.55722030  
Rotation angle (degrees) 152.36501894  
Shift along axis 220.07064730  
  
Average map value = 0.6806 for 10778 atoms, 6422 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5907, correlation about mean = 0.3438, overlap = 279.1  
steps = 40, shift = 0.0068, angle = 0.0108 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.49554478 0.86149528 -0.11072989 190.58424719  
0.67136928 -0.46078955 -0.58046207 199.43661613  
-0.55108854 0.21330432 -0.80672334 184.19501269  
Axis 0.85587626 0.47481542 -0.20500280  
Axis point 0.00000000 13.91564855 128.56116956  
Rotation angle (degrees) 152.37286788  
Shift along axis 220.05161994  
  
Average map value = 0.6806 for 10778 atoms, 6421 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5907, correlation about mean = 0.3438, overlap = 279.1  
steps = 40, shift = 0.0528, angle = 0.0312 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.49556660 0.86141412 -0.11126235 190.63373579  
0.67122934 -0.46111571 -0.58036488 199.42269787  
-0.55123935 0.21292691 -0.80672000 184.20285002  
Axis 0.85589549 0.47469839 -0.20519346  
Axis point 0.00000000 13.92644293 128.58498649  
Rotation angle (degrees) 152.39146938  
Shift along axis 220.03096705  
  
Average map value = 0.6806 for 10778 atoms, 6422 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5907, correlation about mean = 0.3438, overlap = 279.1  
steps = 40, shift = 0.0114, angle = 0.0141 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.49557856 0.86143848 -0.11102024 190.63661306  
0.67127831 -0.46098330 -0.58041343 199.42886345  
-0.55116897 0.21311499 -0.80671843 184.19362245  
Axis 0.85589315 0.47474076 -0.20510517  
Axis point 0.00000000 13.91577542 128.57301191  
Rotation angle (degrees) 152.38244930  
Shift along axis 220.06251677  
  
Average map value = 0.6806 for 10778 atoms, 6423 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5907, correlation about mean = 0.3439, overlap = 279.1  
steps = 48, shift = 0.0603, angle = 0.0235 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.49554726 0.86150781 -0.11062121 190.57757351  
0.67138495 -0.46072483 -0.58049531 199.43861089  
-0.55106722 0.21339346 -0.80671433 184.19301001  
Axis 0.85587387 0.47483508 -0.20496724  
Axis point 0.00000000 13.91147790 128.55720789  
Rotation angle (degrees) 152.36816021  
Shift along axis 220.05727987  
  
Average map value = 0.6806 for 10778 atoms, 6419 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5907, correlation about mean = 0.3438, overlap = 279.1  
steps = 40, shift = 0.059, angle = 0.0293 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.49549762 0.86147130 -0.11112678 190.63201885  
0.67127326 -0.46097332 -0.58042720 199.42114262  
-0.55124789 0.21300388 -0.80669385 184.20152913  
Axis 0.85587000 0.47475637 -0.20516564  
Axis point 0.00000000 13.91027675 128.58253881  
Rotation angle (degrees) 152.38531551  
Shift along axis 220.04085834  
  
Average map value = 0.6806 for 10778 atoms, 6422 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5907, correlation about mean = 0.3438, overlap = 279.1  
steps = 40, shift = 0.00144, angle = 0.00577 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.49557045 0.86143653 -0.11107151 190.63163152  
0.67127030 -0.46100675 -0.58040407 199.42225663  
-0.55118602 0.21307211 -0.80671811 184.20186549  
Axis 0.85589193 0.47473443 -0.20512493  
Axis point 0.00000000 13.91544196 128.57801862  
Rotation angle (degrees) 152.38437993  
Shift along axis 220.04829099  
  
Average map value = 0.6806 for 10778 atoms, 6420 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5907, correlation about mean = 0.3438, overlap = 279.1  
steps = 40, shift = 0.0026, angle = 0.0122 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.49558093 0.86140413 -0.11127585 190.63339004  
0.67122673 -0.46113792 -0.58035026 199.42333275  
-0.55122967 0.21291921 -0.80672866 184.20336181  
Axis 0.85590061 0.47468956 -0.20519252  
Axis point 0.00000000 13.92959722 128.58477055  
Rotation angle (degrees) 152.39249195  
Shift along axis 220.03025798  
  
Average map value = 0.6806 for 10778 atoms, 6423 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5907, correlation about mean = 0.3438, overlap = 279.1  
steps = 40, shift = 0.0467, angle = 0.0353 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.49556808 0.86148933 -0.11067191 190.58982569  
0.67137590 -0.46077603 -0.58046514 199.43509763  
-0.55105953 0.21335755 -0.80672908 184.19585482  
Axis 0.85588219 0.47481625 -0.20497612  
Axis point 0.00000000 13.91188920 128.55908864  
Rotation angle (degrees) 152.37094826  
Shift along axis 220.06171027  
  
Average map value = 0.6806 for 10778 atoms, 6422 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5907, correlation about mean = 0.3438, overlap = 279.1  
steps = 40, shift = 0.00962, angle = 0.0192 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.49548048 0.86157766 -0.11037611 190.58054491  
0.67145695 -0.46052169 -0.58057321 199.43424366  
-0.55103954 0.21354991 -0.80669184 184.19259068  
Axis 0.85584660 0.47491414 -0.20489790  
Axis point 0.00000000 13.88631999 128.55107147  
Rotation angle (degrees) 152.35835002  
Shift along axis 220.08117995  
  
Average map value = 0.6806 for 10778 atoms, 6420 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5907, correlation about mean = 0.3438, overlap = 279.1  
steps = 40, shift = 0.0482, angle = 0.0272 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.49540935 0.86155888 -0.11084096 190.62448828  
0.67137330 -0.46073238 -0.58050279 199.42007331  
-0.55120539 0.21317086 -0.80667878 184.20097901  
Axis 0.85583570 0.47485463 -0.20508128  
Axis point 0.00000000 13.88670208 128.57400631  
Rotation angle (degrees) 152.37495030  
Shift along axis 220.06261483  
  
Average map value = 0.6806 for 10778 atoms, 6420 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5907, correlation about mean = 0.3438, overlap = 279.1  
steps = 28, shift = 0.0647, angle = 0.022 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.49545216 0.86158320 -0.11045992 190.56091457  
0.67146376 -0.46055287 -0.58054061 199.41625167  
-0.55105671 0.21346028 -0.80670383 184.20247892  
Axis 0.85584079 0.47491219 -0.20492669  
Axis point 0.00000000 13.88655263 128.55466156  
Rotation angle (degrees) 152.36276477  
Shift along axis 220.04700834  
  
Average map value = 0.6806 for 10778 atoms, 6418 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5907, correlation about mean = 0.3437, overlap = 279.1  
steps = 44, shift = 0.0717, angle = 0.0104 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.49542071 0.86157930 -0.11063130 190.63206724  
0.67139718 -0.46061155 -0.58057105 199.41581761  
-0.55116609 0.21334940 -0.80665844 184.19990334  
Axis 0.85583290 0.47488910 -0.20501312  
Axis point 0.00000000 13.86828244 128.56843021  
Rotation angle (degrees) 152.36552748  
Shift along axis 220.08619690  
  
Average map value = 0.6806 for 10778 atoms, 6421 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5907, correlation about mean = 0.3438, overlap = 279.1  
steps = 40, shift = 0.0187, angle = 0.00434 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.49535517 0.86161561 -0.11064201 190.61368632  
0.67142630 -0.46056540 -0.58057399 199.42086289  
-0.55118953 0.21330239 -0.80665485 184.19789157  
Axis 0.85581325 0.47491829 -0.20502755  
Axis point 0.00000000 13.87212577 128.56788908  
Rotation angle (degrees) 152.36650401  
Shift along axis 220.07269136  
  
Average map value = 0.6806 for 10778 atoms, 6422 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5907, correlation about mean = 0.3438, overlap = 279.1  
steps = 44, shift = 0.0215, angle = 0.0305 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.49547561 0.86148207 -0.11114136 190.63488355  
0.67123810 -0.46094786 -0.58048807 199.41746234  
-0.55131048 0.21301538 -0.80664804 184.19880701  
Axis 0.85586114 0.47475993 -0.20519435  
Axis point 0.00000000 13.90221400 128.58635879  
Rotation angle (degrees) 152.38227119  
Shift along axis 220.03585504  
  
Average map value = 0.6806 for 10778 atoms, 6422 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5907, correlation about mean = 0.3438, overlap = 279.1  
steps = 40, shift = 0.0114, angle = 0.0136 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.49560625 0.86140452 -0.11116005 190.63003820  
0.67127177 -0.46110227 -0.58032648 199.42657327  
-0.55115204 0.21299484 -0.80676173 184.20507963  
Axis 0.85590729 0.47470344 -0.20513252  
Axis point 0.00000000 13.93038725 128.57826030  
Rotation angle (degrees) 152.39076723  
Shift along axis 220.04366767  
  
Average map value = 0.6806 for 10778 atoms, 6421 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5907, correlation about mean = 0.3438, overlap = 279.1  
steps = 40, shift = 0.00473, angle = 0.00514 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.49557757 0.86141196 -0.11123020 190.63263110  
0.67123678 -0.46110773 -0.58036261 199.42326639  
-0.55122044 0.21295290 -0.80672607 184.20273972  
Axis 0.85589835 0.47470006 -0.20517766  
Axis point 0.00000000 13.92657014 128.58314144  
Rotation angle (degrees) 152.39067343  
Shift along axis 220.03410256  
  
Average map value = 0.6806 for 10778 atoms, 6423 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5907, correlation about mean = 0.3438, overlap = 279.1  
steps = 40, shift = 0.0026, angle = 0.00699 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.49559421 0.86141797 -0.11110948 190.63064611  
0.67126668 -0.46105437 -0.58037044 199.42445103  
-0.55116907 0.21304415 -0.80673707 184.20263524  
Axis 0.85590106 0.47471710 -0.20512692  
Axis point 0.00000000 13.92282522 128.57776153  
Rotation angle (degrees) 152.38702621  
Shift along axis 220.04624920  
  
Average map value = 0.6806 for 10778 atoms, 6421 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5907, correlation about mean = 0.3438, overlap = 279.1  
steps = 28, shift = 0.0395, angle = 0.0377 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.49555477 0.86152174 -0.11047905 190.59329093  
0.67139906 -0.46064191 -0.58054479 199.43078000  
-0.55104327 0.21351622 -0.80669821 184.19506341  
Axis 0.85587178 0.47485833 -0.20492208  
Axis point 0.00000000 13.89273474 128.55520136  
Rotation angle (degrees) 152.36157971  
Shift along axis 220.07915227  
  
Average map value = 0.6806 for 10778 atoms, 6421 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5907, correlation about mean = 0.3438, overlap = 279.1  
steps = 40, shift = 0.0368, angle = 0.0153 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.49543684 0.86155912 -0.11071615 190.62647307  
0.67138196 -0.46067874 -0.58053534 199.41891302  
-0.55117013 0.21328578 -0.80667250 184.19989618  
Axis 0.85584060 0.47486567 -0.20503528  
Axis point 0.00000000 13.87936391 128.56974092  
Rotation angle (degrees) 152.36955017  
Shift along axis 220.07559387  
  
Average map value = 0.6806 for 10778 atoms, 6420 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5907, correlation about mean = 0.3438, overlap = 279.1  
steps = 40, shift = 0.0437, angle = 0.0161 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.49554919 0.86152720 -0.11046147 190.58721199  
0.67142533 -0.46063474 -0.58052010 199.43446861  
-0.55101629 0.21350965 -0.80671838 184.19428983  
Axis 0.85587082 0.47486635 -0.20490749  
Axis point 0.00000000 13.89724743 128.55213608  
Rotation angle (degrees) 152.36272706  
Shift along axis 220.07996272  
  
Average map value = 0.6806 for 10778 atoms, 6421 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5907, correlation about mean = 0.3438, overlap = 279.1  
steps = 40, shift = 0.00416, angle = 0.00413 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.49549743 0.86155982 -0.11043924 190.58282579  
0.67143938 -0.46057415 -0.58055193 199.43416922  
-0.55104571 0.21350875 -0.80669852 184.19319045  
Axis 0.85585360 0.47489398 -0.20491540  
Axis point 0.00000000 13.89130794 128.55286626  
Rotation angle (degrees) 152.36095487  
Shift along axis 220.07706232  
  
Average map value = 0.6806 for 10778 atoms, 6420 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5907, correlation about mean = 0.3438, overlap = 279.1  
steps = 40, shift = 0.0454, angle = 0.0386 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.49550961 0.86146839 -0.11109591 190.62509056  
0.67128842 -0.46097020 -0.58041214 199.42362083  
-0.55121865 0.21302241 -0.80670894 184.20149548  
Axis 0.85587371 0.47475811 -0.20514613  
Axis point 0.00000000 13.91423802 128.57966939  
Rotation angle (degrees) 152.38531424  
Shift along axis 220.04075945  
  
Average map value = 0.6806 for 10778 atoms, 6420 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5907, correlation about mean = 0.3438, overlap = 279.1  
steps = 28, shift = 0.0716, angle = 0.0741 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.49537948 0.86170234 -0.10985488 190.55672806  
0.67160664 -0.46012886 -0.58071152 199.43403843  
-0.55094792 0.21389332 -0.80666344 184.18860222  
Axis 0.85580204 0.47506421 -0.20473609  
Axis point 0.00000000 13.85190655 128.53331726  
Rotation angle (degrees) 152.33858246  
Shift along axis 220.11275659  
  
Average map value = 0.6806 for 10778 atoms, 6419 outside contour  

> fitmap #4 inMap #2

Fit molecule RNAFramework.pdb (#4) to map
cryosparc_P12_J2773_004_volume_map.mrc (#2) using 10778 atoms  
average map value = 0.6819, steps = 60  
shifted from previous position = 1.51  
rotated from previous position = 1.91 degrees  
atoms outside contour = 6485, contour level = 0.4  
  
Position of RNAFramework.pdb (#4) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.47580944 0.87307217 -0.10653739 190.17736201  
0.66776632 -0.43741636 -0.60229144 197.96480713  
-0.57244514 0.21543389 -0.79113505 183.48377262  
Axis 0.84890282 0.48367146 -0.21313356  
Axis point 0.00000000 10.03700833 129.59793598  
Rotation angle (degrees) 151.20765341  
Shift along axis 218.08547707  
  

> fitmap #4 inMap #2

Fit molecule RNAFramework.pdb (#4) to map
cryosparc_P12_J2773_004_volume_map.mrc (#2) using 10778 atoms  
average map value = 0.6819, steps = 28  
shifted from previous position = 0.068  
rotated from previous position = 0.0404 degrees  
atoms outside contour = 6492, contour level = 0.4  
  
Position of RNAFramework.pdb (#4) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.47579234 0.87299679 -0.10722920 190.24268340  
0.66762240 -0.43782318 -0.60215539 197.95217689  
-0.57262720 0.21491232 -0.79114515 183.49523490  
Axis 0.84891649 0.48353891 -0.21337976  
Axis point 0.00000000 10.05176911 129.62981857  
Rotation angle (degrees) 151.23347984  
Shift along axis 218.06356185  
  

> fitmap #4 inMap #2

Fit molecule RNAFramework.pdb (#4) to map
cryosparc_P12_J2773_004_volume_map.mrc (#2) using 10778 atoms  
average map value = 0.6819, steps = 28  
shifted from previous position = 0.0646  
rotated from previous position = 0.0485 degrees  
atoms outside contour = 6486, contour level = 0.4  
  
Position of RNAFramework.pdb (#4) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.47577642 0.87310473 -0.10641792 190.17995027  
0.66775970 -0.43729998 -0.60238329 197.96001768  
-0.57248030 0.21553819 -0.79108120 183.48299564  
Axis 0.84888644 0.48370662 -0.21311900  
Axis point 0.00000000 10.01832473 129.59874334  
Rotation angle (degrees) 151.19949227  
Shift along axis 218.09203984  
  

> fitmap #4 inMap #2

Fit molecule RNAFramework.pdb (#4) to map
cryosparc_P12_J2773_004_volume_map.mrc (#2) using 10778 atoms  
average map value = 0.6819, steps = 28  
shifted from previous position = 0.0602  
rotated from previous position = 0.0234 degrees  
atoms outside contour = 6491, contour level = 0.4  
  
Position of RNAFramework.pdb (#4) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.47570542 0.87309445 -0.10681892 190.23734388  
0.66768317 -0.43748016 -0.60233729 197.94757983  
-0.57262855 0.21521393 -0.79106218 183.49250120  
Axis 0.84887434 0.48365635 -0.21328127  
Axis point 0.00000000 10.01077322 129.62230346  
Rotation angle (degrees) 151.21330103  
Shift along axis 218.09068879  
  

> fitmap #4 inMap #2 search 500 resolution 15

Found 91 unique fits from 500 random placements having fraction of points
inside contour >= 0.100 (499 of 500).  
  
Correlations and times found:  
0.5906 (59), 0.5732 (45), 0.5456 (14), 0.54 (42), 0.5399 (30), 0.5393 (26),
0.5315 (15), 0.5189 (22), 0.518 (20), 0.5165 (22), 0.5109 (10), 0.5091 (6),
0.5048 (1), 0.5041 (10), 0.5019 (4), 0.4949 (17), 0.4945 (10), 0.4902 (1),
0.4892 (9), 0.4889 (3), 0.4882 (12), 0.4836 (5), 0.4827 (1), 0.4818 (5),
0.4778 (2), 0.4726 (1), 0.4676 (7), 0.4672 (1), 0.467 (2), 0.4647 (1), 0.4637
(1), 0.462 (1), 0.4613 (2), 0.4472 (2), 0.4437 (4), 0.4382 (3), 0.438 (3),
0.4368 (3), 0.4363 (3), 0.4363 (1), 0.4361 (2), 0.4357 (1), 0.4357 (1), 0.4353
(1), 0.4317 (1), 0.4314 (2), 0.4295 (2), 0.4292 (1), 0.4282 (2), 0.4268 (1),
0.4266 (1), 0.4259 (1), 0.4255 (1), 0.4245 (3), 0.4245 (1), 0.424 (1), 0.4189
(2), 0.4188 (3), 0.4165 (2), 0.4159 (3), 0.4122 (3), 0.4114 (1), 0.4092 (2),
0.4067 (2), 0.406 (1), 0.4043 (2), 0.3974 (1), 0.3933 (1), 0.3893 (1), 0.3893
(1), 0.3878 (1), 0.3873 (2), 0.3856 (1), 0.3821 (3), 0.3801 (1), 0.3785 (1),
0.376 (2), 0.3756 (1), 0.3751 (1), 0.3709 (1), 0.3629 (1), 0.3464 (1), 0.3426
(1), 0.3417 (1), 0.3197 (1), 0.3192 (1), 0.3152 (1), 0.3143 (1), 0.3111 (1),
0.2722 (1), 0.2628 (2)  
  
Best fit found:  
Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5906, correlation about mean = 0.3429, overlap = 279.2  
steps = 296, shift = 10.9, angle = 85.6 degrees  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.49216114 0.86349117 -0.11027336 190.60913071  
0.67192835 -0.45736794 -0.58251763 199.08772326  
-0.55343436 0.21259676 -0.80530295 184.27720443  
Axis 0.85476661 0.47640846 -0.20593452  
Axis point 0.00000000 13.29889683 128.71740629  
Rotation angle (degrees) 152.28290744  
Shift along axis 219.82435822  
  
Found 91 fits.  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2644, overlap = 254.5  
steps = 40, shift = 0.574, angle = 0.626 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53420875 -0.83769076 -0.11355627 193.07055231  
-0.83150651 0.54490942 -0.10803063 181.37172197  
0.15237416 0.03671186 -0.98764072 190.52464258  
Axis 0.47796195 -0.87814312 0.02042136  
Axis point 137.57798851 0.00000000 107.04978110  
Rotation angle (degrees) 171.29098549  
Shift along axis -63.09918006  
  
Average map value = 0.621 for 10778 atoms, 6739 outside contour  

> select subtract #4

Nothing selected  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.4974, correlation about mean = 0.2314, overlap = 216.8  
steps = 132, shift = 7.61, angle = 14.7 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.34380805 -0.90657882 -0.24476656 188.67838056  
-0.90777064 0.25416603 0.33369447 199.36718971  
-0.24030899 0.33691876 -0.91035002 188.28614843  
Axis 0.57279192 -0.79188507 -0.21172495  
Axis point 166.29260039 0.00000000 67.70413075  
Rotation angle (degrees) 179.83873878  
Shift along axis -89.66732537  
  
Average map value = 0.535 for 10778 atoms, 7329 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.4974, correlation about mean = 0.2313, overlap = 216.8  
steps = 36, shift = 0.035, angle = 0.0841 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.34508787 -0.90623820 -0.24422631 188.69424391  
-0.90735715 0.25557119 0.33374581 199.36185221  
-0.24003599 0.33677213 -0.91047629 188.31389719  
Axis 0.57223297 -0.79232860 -0.21157698  
Axis point 166.19709272 0.00000000 67.73928897  
Rotation angle (degrees) 179.84849215  
Shift along axis -89.82591342  
  
Average map value = 0.5349 for 10778 atoms, 7329 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.4974, correlation about mean = 0.2314, overlap = 216.7  
steps = 28, shift = 0.0534, angle = 0.0355 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.34451212 -0.90646373 -0.24420220 188.64746040  
-0.90754848 0.25504448 0.33362849 199.35282523  
-0.24013970 0.33656441 -0.91052575 188.32729698  
Axis 0.57248440 -0.79216241 -0.21151911  
Axis point 166.22140438 0.00000000 67.74281125  
Rotation angle (degrees) 179.85308283  
Shift along axis -89.75690842  
  
Average map value = 0.5348 for 10778 atoms, 7326 outside contour  

> select down

Nothing selected  

> select down

Nothing selected  

> select down

Nothing selected  

> select down

Nothing selected  

> select down

Nothing selected  

> select down

Nothing selected  

> select down

Nothing selected  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.4327, correlation about mean = 0.1362, overlap = 186.1  
steps = 64, shift = 2.9, angle = 1.52 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.90390778 -0.42729330 0.01925256 214.03885509  
-0.42614854 -0.89579666 0.12627523 200.68333404  
-0.03671024 -0.12234559 -0.99180818 157.38807681  
Axis -0.97558048 0.21959631 0.00449198  
Axis point 0.00000000 129.61535018 71.42607292  
Rotation angle (degrees) 172.67935514  
Shift along axis -164.03582638  
  
Average map value = 0.464 for 10778 atoms, 7791 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2644, overlap = 254.5  
steps = 340, shift = 39.6, angle = 39.9 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53432138 -0.83761530 -0.11358196 193.08762964  
-0.83141762 0.54502817 -0.10811398 181.36422796  
0.15246336 0.03666652 -0.98762851 190.52469055  
Axis 0.47789913 -0.87817647 0.02045763  
Axis point 137.57302895 0.00000000 107.05737056  
Rotation angle (degrees) 171.28752654  
Shift along axis -63.09570315  
  
Average map value = 0.621 for 10778 atoms, 6736 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2644, overlap = 254.5  
steps = 40, shift = 0.01, angle = 0.0143 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53416402 -0.83772802 -0.11349073 193.08141535  
-0.83154542 0.54485409 -0.10800850 181.36957075  
0.15231771 0.03667854 -0.98765054 190.52737049  
Axis 0.47798978 -0.87812789 0.02042491  
Axis point 137.59002042 0.00000000 107.04758641  
Rotation angle (degrees) 171.29485898  
Shift along axis -63.08322932  
  
Average map value = 0.621 for 10778 atoms, 6740 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2644, overlap = 254.5  
steps = 36, shift = 0.00828, angle = 0.00928 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53427936 -0.83765656 -0.11347529 193.08538975  
-0.83146102 0.54496883 -0.10807928 181.36528946  
0.15237389 0.03660585 -0.98764457 190.52272634  
Axis 0.47792802 -0.87816057 0.02046526  
Axis point 137.58204744 0.00000000 107.05017707  
Rotation angle (degrees) 171.29384092  
Shift along axis -63.08783094  
  
Average map value = 0.621 for 10778 atoms, 6738 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2643, overlap = 254.5  
steps = 28, shift = 0.0466, angle = 0.0103 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53440547 -0.83758426 -0.11341512 193.04133386  
-0.83140083 0.54508100 -0.10797662 181.38140939  
0.15226001 0.03659022 -0.98766271 190.51525453  
Axis 0.47786818 -0.87819374 0.02043940  
Axis point 137.56284263 0.00000000 107.03586186  
Rotation angle (degrees) 171.29991620  
Shift along axis -63.14568938  
  
Average map value = 0.621 for 10778 atoms, 6734 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2643, overlap = 254.5  
steps = 40, shift = 0.00848, angle = 0.0244 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53415637 -0.83778155 -0.11313104 193.04229613  
-0.83158732 0.54479126 -0.10800284 181.37555084  
0.15211566 0.03638803 -0.98769242 190.50864422  
Axis 0.47801351 -0.87811308 0.02050632  
Axis point 137.59344766 0.00000000 107.02478578  
Rotation angle (degrees) 171.31325041  
Shift along axis -63.08478702  
  
Average map value = 0.621 for 10778 atoms, 6733 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2644, overlap = 254.5  
steps = 36, shift = 0.0483, angle = 0.0407 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53446983 -0.83751042 -0.11365683 193.08392952  
-0.83130293 0.54518954 -0.10818228 181.36261185  
0.15256838 0.03666318 -0.98761242 190.52100161  
Axis 0.47781513 -0.87822172 0.02047723  
Axis point 137.55478191 0.00000000 107.06308903  
Rotation angle (degrees) 171.28204255  
Shift along axis -63.11681984  
  
Average map value = 0.621 for 10778 atoms, 6736 outside contour  

> scalebar 50

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2644, overlap = 254.5  
steps = 40, shift = 0.0149, angle = 0.0182 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53424977 -0.83765754 -0.11360728 193.07668661  
-0.83147234 0.54495840 -0.10804484 181.37118061  
0.15241589 0.03673847 -0.98763316 190.52794818  
Axis 0.47793738 -0.87815658 0.02041767  
Axis point 137.57479994 0.00000000 107.05442123  
Rotation angle (degrees) 171.28805908  
Shift along axis -63.10359169  
  
Average map value = 0.621 for 10778 atoms, 6738 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2644, overlap = 254.5  
steps = 40, shift = 0.00511, angle = 0.00574 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53421094 -0.83769339 -0.11352549 193.08180220  
-0.83150838 0.54490671 -0.10802819 181.36903355  
0.15235538 0.03668765 -0.98764439 190.52714387  
Axis 0.47796270 -0.87814257 0.02042766  
Axis point 137.58442948 0.00000000 107.05013885  
Rotation angle (degrees) 171.29261510  
Shift along axis -63.08994634  
  
Average map value = 0.621 for 10778 atoms, 6739 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2644, overlap = 254.5  
steps = 36, shift = 0.00767, angle = 0.0065 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53428542 -0.83765228 -0.11347831 193.08655249  
-0.83145713 0.54497523 -0.10807698 181.36545610  
0.15237387 0.03660849 -0.98764447 190.52310702  
Axis 0.47792474 -0.87816239 0.02046381  
Axis point 137.58216009 0.00000000 107.05034338  
Rotation angle (degrees) 171.29376005  
Shift along axis -63.08865330  
  
Average map value = 0.621 for 10778 atoms, 6738 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2644, overlap = 254.5  
steps = 28, shift = 0.00597, angle = 0.0174 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53428123 -0.83761632 -0.11376316 193.08713471  
-0.83141675 0.54501821 -0.10817084 181.36407455  
0.15260873 0.03679104 -0.98760143 190.52976116  
Axis 0.47790863 -0.87817174 0.02043866  
Axis point 137.56339572 -0.00000000 107.07010940  
Rotation angle (degrees) 171.27670144  
Shift along axis -63.09662352  
  
Average map value = 0.621 for 10778 atoms, 6738 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2643, overlap = 254.5  
steps = 36, shift = 0.0412, angle = 0.0338 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53419059 -0.83774563 -0.11323537 193.05164083  
-0.83155757 0.54484047 -0.10798365 181.37714743  
0.15215811 0.03647797 -0.98768257 190.51670697  
Axis 0.47799046 -0.87812636 0.02047489  
Axis point 137.59076601 0.00000000 107.03120782  
Rotation angle (degrees) 171.30853871  
Shift along axis -63.09440096  
  
Average map value = 0.621 for 10778 atoms, 6736 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2643, overlap = 254.5  
steps = 40, shift = 0.0148, angle = 0.0135 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53433453 -0.83765290 -0.11324230 193.04584796  
-0.83144177 0.54498954 -0.10812297 181.37036756  
0.15228546 0.03638064 -0.98766653 190.50543447  
Axis 0.47791044 -0.87816835 0.02054178  
Axis point 137.57225001 0.00000000 107.03599606  
Rotation angle (degrees) 171.30452612  
Shift along axis -63.10176754  
  
Average map value = 0.621 for 10778 atoms, 6739 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2644, overlap = 254.5  
steps = 36, shift = 0.0468, angle = 0.0337 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53453377 -0.83745752 -0.11374595 193.08523724  
-0.83124830 0.54526764 -0.10820843 181.36430585  
0.15264202 0.03671016 -0.98759929 190.52605570  
Axis 0.47777594 -0.87824319 0.02047091  
Axis point 137.54569099 0.00000000 107.07067459  
Rotation angle (degrees) 171.27688620  
Shift along axis -63.13024454  
  
Average map value = 0.621 for 10778 atoms, 6735 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2643, overlap = 254.5  
steps = 40, shift = 0.0564, angle = 0.0552 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53405585 -0.83784955 -0.11310198 193.03757100  
-0.83166751 0.54468419 -0.10792535 181.38096028  
0.15203014 0.03642517 -0.98770422 190.51319974  
Axis 0.47807010 -0.87808302 0.02047411  
Axis point 137.60304061 0.00000000 107.02019941  
Rotation angle (degrees) 171.31673244  
Shift along axis -63.08146270  
  
Average map value = 0.621 for 10778 atoms, 6733 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2644, overlap = 254.5  
steps = 340, shift = 39.6, angle = 39.9 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53423704 -0.83766484 -0.11361353 193.08181429  
-0.83147797 0.54494723 -0.10805774 181.36948982  
0.15242956 0.03673882 -0.98763104 190.52934547  
Axis 0.47794346 -0.87815318 0.02042158  
Axis point 137.57696182 0.00000000 107.05642520  
Rotation angle (degrees) 171.28736714  
Shift along axis -63.09709297  
  
Average map value = 0.621 for 10778 atoms, 6739 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2644, overlap = 254.5  
steps = 36, shift = 0.00977, angle = 0.0108 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53421129 -0.83770582 -0.11343231 193.07796616  
-0.83151349 0.54489378 -0.10805397 181.36666648  
0.15232602 0.03659697 -0.98765228 190.52085737  
Axis 0.47796694 -0.87813948 0.02046118  
Axis point 137.58648546 0.00000000 107.04567592  
Rotation angle (degrees) 171.29662847  
Shift along axis -63.08206207  
  
Average map value = 0.621 for 10778 atoms, 6738 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2644, overlap = 254.5  
steps = 36, shift = 0.00967, angle = 0.00527 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53428275 -0.83765786 -0.11344989 193.08686825  
-0.83146262 0.54496803 -0.10807091 181.36544333  
0.15235303 0.03658904 -0.98764841 190.52242907  
Axis 0.47792799 -0.87816052 0.02046785  
Axis point 137.58429843 0.00000000 107.04863735  
Rotation angle (degrees) 171.29536718  
Shift along axis -63.08676783  
  
Average map value = 0.621 for 10778 atoms, 6738 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2644, overlap = 254.5  
steps = 28, shift = 0.0112, angle = 0.0154 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53422579 -0.83765855 -0.11371275 193.08255980  
-0.83147415 0.54495155 -0.10806537 181.37020484  
0.15248984 0.03681802 -0.98761878 190.53192424  
Axis 0.47794374 -0.87815350 0.02040122  
Axis point 137.57243903 0.00000000 107.06160382  
Rotation angle (degrees) 171.28210635  
Shift along axis -63.10119706  
  
Average map value = 0.621 for 10778 atoms, 6739 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2643, overlap = 254.5  
steps = 36, shift = 0.0145, angle = 0.0193 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53410955 -0.83777007 -0.11343692 193.07133493  
-0.83159005 0.54479088 -0.10798361 181.37251935  
0.15226486 0.03665805 -0.98765944 190.52464182  
Axis 0.47802215 -0.87811029 0.02042418  
Axis point 137.59327652 0.00000000 107.04229952  
Rotation angle (degrees) 171.29820340  
Shift along axis -63.08138950  
  
Average map value = 0.621 for 10778 atoms, 6739 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2644, overlap = 254.5  
steps = 40, shift = 0.00972, angle = 0.0121 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53419989 -0.83769022 -0.11360105 193.07852661  
-0.83150861 0.54490719 -0.10802391 181.37193345  
0.15239262 0.03675401 -0.98763617 190.53022673  
Axis 0.47796464 -0.87814198 0.02040776  
Axis point 137.58014859 -0.00000000 107.05384296  
Rotation angle (degrees) 171.28888619  
Shift along axis -63.09730457  
  
Average map value = 0.621 for 10778 atoms, 6739 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2643, overlap = 254.5  
steps = 36, shift = 0.0471, angle = 0.0367 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53396829 -0.83790770 -0.11308490 193.03787220  
-0.83173565 0.54459240 -0.10786336 181.38431505  
0.15196473 0.03646125 -0.98771295 190.51608952  
Axis 0.47811892 -0.87805708 0.02044677  
Axis point 137.61267736 0.00000000 107.01647747  
Rotation angle (degrees) 171.31919642  
Shift along axis -63.07528450  
  
Average map value = 0.621 for 10778 atoms, 6733 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2643, overlap = 254.5  
steps = 36, shift = 0.0229, angle = 0.035 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53435887 -0.83762480 -0.11333541 193.05366289  
-0.83142317 0.54502640 -0.10808005 181.37293300  
0.15230134 0.03647627 -0.98766055 190.51395101  
Axis 0.47789401 -0.87817821 0.02050219  
Axis point 137.57107405 0.00000000 107.04048348  
Rotation angle (degrees) 171.30102772  
Shift along axis -63.11261551  
  
Average map value = 0.621 for 10778 atoms, 6738 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2643, overlap = 254.5  
steps = 44, shift = 0.0195, angle = 0.0305 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53404781 -0.83786294 -0.11304096 193.03871736  
-0.83167930 0.54466680 -0.10792218 181.38009479  
0.15199367 0.03637834 -0.98771155 190.51137868  
Axis 0.47807785 -0.87807850 0.02048684  
Axis point 137.60747991 -0.00000000 107.01706193  
Rotation angle (degrees) 171.31990481  
Shift along axis -63.07545218  
  
Average map value = 0.621 for 10778 atoms, 6733 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2644, overlap = 254.5  
steps = 36, shift = 0.0365, angle = 0.0358 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53426008 -0.83765713 -0.11356199 193.06970231  
-0.83146816 0.54496220 -0.10805774 181.37103826  
0.15240235 0.03669236 -0.98763696 190.52313031  
Axis 0.47793418 -0.87815792 0.02043470  
Axis point 137.57291097 0.00000000 107.05127763  
Rotation angle (degrees) 171.29001371  
Shift along axis -63.10452145  
  
Average map value = 0.621 for 10778 atoms, 6739 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2643, overlap = 254.5  
steps = 44, shift = 0.0462, angle = 0.034 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53397941 -0.83789096 -0.11315632 193.03137273  
-0.83171946 0.54461479 -0.10787516 181.39076695  
0.15201424 0.03651132 -0.98770348 190.51646016  
Axis 0.47810886 -0.87806281 0.02043579  
Axis point 137.60610736 -0.00000000 107.01989280  
Rotation angle (degrees) 171.31526214  
Shift along axis -63.08912354  
  
Average map value = 0.621 for 10778 atoms, 6733 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2644, overlap = 254.5  
steps = 28, shift = 0.0846, angle = 0.0723 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53468649 -0.83734536 -0.11385403 193.10016583  
-0.83112175 0.54543973 -0.10831301 181.35360720  
0.15279592 0.03671317 -0.98757538 190.52076190  
Axis 0.47768689 -0.87829096 0.02049931  
Axis point 137.53114224 0.00000000 107.07979193  
Rotation angle (degrees) 171.26871877  
Shift along axis -63.13427165  
  
Average map value = 0.6211 for 10778 atoms, 6736 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2644, overlap = 254.5  
steps = 340, shift = 39.6, angle = 39.9 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53419198 -0.83768481 -0.11367802 193.08464058  
-0.83150799 0.54491070 -0.10801123 181.37359197  
0.15242370 0.03682554 -0.98762868 190.53723717  
Axis 0.47796496 -0.87814236 0.02038366  
Axis point 137.58001670 -0.00000000 107.05917629  
Rotation angle (degrees) 171.28532370  
Shift along axis -63.10029392  
  
Average map value = 0.621 for 10778 atoms, 6739 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2644, overlap = 254.5  
steps = 36, shift = 0.0202, angle = 0.0155 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53428511 -0.83765712 -0.11344418 193.08332464  
-0.83145790 0.54497045 -0.10809536 181.36381821  
0.15237053 0.03657040 -0.98764636 190.51996910  
Axis 0.47792633 -0.87816114 0.02048011  
Axis point 137.58159027 0.00000000 107.04888285  
Rotation angle (degrees) 171.29498378  
Shift along axis -63.08518335  
  
Average map value = 0.621 for 10778 atoms, 6738 outside contour  

> volume #2 level 0.3122

> fitmap #4 inMap #2

Fit molecule RNAFramework.pdb (#4) to map
cryosparc_P12_J2773_004_volume_map.mrc (#2) using 10778 atoms  
average map value = 0.6226, steps = 60  
shifted from previous position = 1.01  
rotated from previous position = 1.01 degrees  
atoms outside contour = 6395, contour level = 0.31215  
  
Position of RNAFramework.pdb (#4) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53004801 -0.83800827 -0.12957951 193.29252179  
-0.83156536 0.54360091 -0.11400322 181.31194953  
0.16597515 0.04732674 -0.98499337 189.58267095  
Axis 0.47903526 -0.87758716 0.01913086  
Axis point 136.91350534 0.00000000 107.56214763  
Rotation angle (degrees) 170.30574709  
Shift along axis -62.89622644  
  

> fitmap #4 inMap #2

Fit molecule RNAFramework.pdb (#4) to map
cryosparc_P12_J2773_004_volume_map.mrc (#2) using 10778 atoms  
average map value = 0.6226, steps = 40  
shifted from previous position = 0.0442  
rotated from previous position = 0.0479 degrees  
atoms outside contour = 6393, contour level = 0.31215  
  
Position of RNAFramework.pdb (#4) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.52947493 -0.83833849 -0.12978631 193.28640962  
-0.83197805 0.54304847 -0.11362447 181.33637015  
0.16573599 0.04781814 -0.98500991 189.61504273  
Axis 0.47933557 -0.87742851 0.01888463  
Axis point 136.95396077 0.00000000 107.55648370  
Rotation angle (degrees) 170.30504921  
Shift along axis -62.87983970  
  

> fitmap #4 inMap #2

Fit molecule RNAFramework.pdb (#4) to map
cryosparc_P12_J2773_004_volume_map.mrc (#2) using 10778 atoms  
average map value = 0.6225, steps = 28  
shifted from previous position = 0.0824  
rotated from previous position = 0.0828 degrees  
atoms outside contour = 6391, contour level = 0.31215  
  
Position of RNAFramework.pdb (#4) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.52849570 -0.83896263 -0.12974441 193.23413687  
-0.83273295 0.54203563 -0.11292851 181.37524959  
0.16506886 0.04836030 -0.98509546 189.65024816  
Axis 0.47987375 -0.87714175 0.01853483  
Axis point 137.02605804 0.00000000 107.51818130  
Rotation angle (degrees) 170.32534108  
Shift along axis -62.84867813  
  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2644, overlap = 254.5  
steps = 48, shift = 0.934, angle = 1.02 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53422469 -0.83768425 -0.11352836 193.08411647  
-0.83149552 0.54492175 -0.10805153 181.36639674  
0.15237710 0.03667462 -0.98764149 190.52514015  
Axis 0.47795475 -0.87814665 0.02043814  
Axis point 137.58317902 -0.00000000 107.05100849  
Rotation angle (degrees) 171.29184381  
Shift along axis -63.08684411  
  
Average map value = 0.621 for 10778 atoms, 6371 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2644, overlap = 254.5  
steps = 40, shift = 0.00364, angle = 0.00361 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53423681 -0.83768089 -0.11349610 193.08390614  
-0.83149905 0.54492686 -0.10799850 181.36802137  
0.15231532 0.03667521 -0.98765099 190.52804518  
Axis 0.47795172 -0.87814866 0.02042266  
Axis point 137.58601620 0.00000000 107.04746280  
Rotation angle (degrees) 171.29496769  
Shift along axis -63.09220945  
  
Average map value = 0.621 for 10778 atoms, 6370 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2644, overlap = 254.5  
steps = 36, shift = 0.0125, angle = 0.00771 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53427372 -0.83766737 -0.11342211 193.08039925  
-0.83146694 0.54495591 -0.10809914 181.36330877  
0.15236114 0.03655229 -0.98764848 190.51753339  
Axis 0.47793339 -0.87815715 0.02048644  
Axis point 137.58195214 0.00000000 107.04709803  
Rotation angle (degrees) 171.29598224  
Shift along axis -63.08288941  
  
Average map value = 0.621 for 10778 atoms, 6371 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2643, overlap = 254.5  
steps = 28, shift = 0.0477, angle = 0.0122 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53433679 -0.83762793 -0.11341630 193.03734566  
-0.83145816 0.54501001 -0.10789373 181.38512864  
0.15218778 0.03664940 -0.98767161 190.51548337  
Axis 0.47790673 -0.87817369 0.02039927  
Axis point 137.56893212 0.00000000 107.02972047  
Rotation angle (degrees) 171.30206045  
Shift along axis -63.14742518  
  
Average map value = 0.621 for 10778 atoms, 6373 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2643, overlap = 254.5  
steps = 36, shift = 0.00453, angle = 0.0158 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53412568 -0.83777588 -0.11331786 193.03627074  
-0.83159877 0.54478698 -0.10793639 181.38523140  
0.15216056 0.03658349 -0.98767825 190.51893210  
Axis 0.47802155 -0.87811044 0.02043174  
Axis point 137.58640562 0.00000000 107.03117965  
Rotation angle (degrees) 171.30557593  
Shift along axis -63.10813477  
  
Average map value = 0.621 for 10778 atoms, 6373 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2644, overlap = 254.5  
steps = 36, shift = 0.0577, angle = 0.0399 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53448577 -0.83749181 -0.11371908 193.08609531  
-0.83128138 0.54521616 -0.10821388 181.36496372  
0.15262968 0.03669385 -0.98760177 190.52839057  
Axis 0.47780254 -0.87822856 0.02047759  
Axis point 137.55071689 0.00000000 107.07138124  
Rotation angle (degrees) 171.27803307  
Shift along axis -63.12130133  
  
Average map value = 0.621 for 10778 atoms, 6372 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2644, overlap = 254.5  
steps = 36, shift = 0.00499, angle = 0.0234 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53429253 -0.83765174 -0.11344897 193.08785663  
-0.83145621 0.54497768 -0.10807188 181.36548234  
0.15235372 0.03658594 -0.98764838 190.52203522  
Axis 0.47792287 -0.87816328 0.02046887  
Axis point 137.58419208 0.00000000 107.04851767  
Rotation angle (degrees) 171.29540182  
Shift along axis -63.08763236  
  
Average map value = 0.621 for 10778 atoms, 6371 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2644, overlap = 254.5  
steps = 28, shift = 0.0105, angle = 0.0142 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53423025 -0.83765898 -0.11368850 193.08804049  
-0.83147334 0.54495240 -0.10806763 181.36821694  
0.15247860 0.03679605 -0.98762130 190.53242319  
Axis 0.47794264 -0.87815394 0.02040804  
Axis point 137.57559512 -0.00000000 107.06134088  
Rotation angle (degrees) 171.28328146  
Shift along axis -63.09581437  
  
Average map value = 0.621 for 10778 atoms, 6371 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2643, overlap = 254.5  
steps = 40, shift = 0.0546, angle = 0.037 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53405143 -0.83784905 -0.11312664 193.04019920  
-0.83166807 0.54468360 -0.10792418 181.38145999  
0.15204236 0.03644684 -0.98770150 190.51502143  
Axis 0.47807123 -0.87808255 0.02046775  
Axis point 137.60339605 -0.00000000 107.02194716  
Rotation angle (degrees) 171.31551011  
Shift along axis -63.08151592  
  
Average map value = 0.621 for 10778 atoms, 6373 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2644, overlap = 254.5  
steps = 36, shift = 0.0346, angle = 0.0314 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53426108 -0.83765656 -0.11356140 193.06985037  
-0.83146737 0.54496321 -0.10805899 181.37083283  
0.15240308 0.03669097 -0.98763687 190.52302787  
Axis 0.47793364 -0.87815821 0.02043538  
Axis point 137.57286027 0.00000000 107.05129295  
Rotation angle (degrees) 171.29001161  
Shift along axis -63.10429975  
  
Average map value = 0.621 for 10778 atoms, 6370 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2644, overlap = 254.5  
steps = 40, shift = 0.026, angle = 0.0286 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53456593 -0.83743143 -0.11378693 193.09150318  
-0.83121748 0.54530731 -0.10824542 181.36334665  
0.15269693 0.03671746 -0.98759050 190.52884518  
Axis 0.47775583 -0.87825393 0.02047938  
Axis point 137.54291017 0.00000000 107.07642366  
Rotation angle (degrees) 171.27382836  
Shift along axis -63.13056651  
  
Average map value = 0.621 for 10778 atoms, 6372 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2644, overlap = 254.5  
steps = 40, shift = 0.0135, angle = 0.0142 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53444230 -0.83753148 -0.11363120 193.08186708  
-0.83132700 0.54515749 -0.10815897 181.36311816  
0.15253341 0.03666004 -0.98761790 190.52007005  
Axis 0.47783178 -0.87821279 0.02047175  
Axis point 137.55791359 0.00000000 107.05996007  
Rotation angle (degrees) 171.28395260  
Shift along axis -63.11447740  
  
Average map value = 0.621 for 10778 atoms, 6371 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2644, overlap = 254.5  
steps = 40, shift = 0.0138, angle = 0.0156 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53425045 -0.83765843 -0.11359758 193.07511235  
-0.83147275 0.54495769 -0.10804545 181.37107613  
0.15241102 0.03673005 -0.98763419 190.52679167  
Axis 0.47793765 -0.87815637 0.02042039  
Axis point 137.57452250 0.00000000 107.05352587  
Rotation angle (degrees) 171.28853707  
Shift along axis -63.10366917  
  
Average map value = 0.621 for 10778 atoms, 6370 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2644, overlap = 254.5  
steps = 28, shift = 0.0284, angle = 0.0171 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53437507 -0.83755216 -0.11379485 193.10036512  
-0.83135191 0.54511643 -0.10817444 181.36259398  
0.15263315 0.03679793 -0.98759736 190.53266938  
Axis 0.47785767 -0.87819950 0.02043725  
Axis point 137.56141123 -0.00000000 107.07337423  
Rotation angle (degrees) 171.27512716  
Shift along axis -63.10408372  
  
Average map value = 0.621 for 10778 atoms, 6371 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2644, overlap = 254.5  
steps = 28, shift = 0.0215, angle = 0.0163 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53422145 -0.83767327 -0.11362456 193.08181259  
-0.83148278 0.54493452 -0.10808515 181.36670830  
0.15245795 0.03673555 -0.98762675 190.52560893  
Axis 0.47795021 -0.87814930 0.02043042  
Axis point 137.57594042 -0.00000000 107.05687749  
Rotation angle (degrees) 171.28602695  
Shift along axis -63.09103753  
  
Average map value = 0.621 for 10778 atoms, 6371 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2643, overlap = 254.5  
steps = 40, shift = 0.0522, angle = 0.0384 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53400154 -0.83788854 -0.11306973 193.03578159  
-0.83170812 0.54462492 -0.10791168 181.38135954  
0.15199852 0.03641610 -0.98770939 190.51340890  
Axis 0.47810085 -0.87806630 0.02047327  
Axis point 137.60807411 -0.00000000 107.01813008  
Rotation angle (degrees) 171.31867347  
Shift along axis -63.07385445  
  
Average map value = 0.621 for 10778 atoms, 6372 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2643, overlap = 254.5  
steps = 40, shift = 0.00172, angle = 0.00696 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53407571 -0.83783155 -0.11314170 193.03486098  
-0.83165008 0.54471017 -0.10792878 181.38307766  
0.15205554 0.03645225 -0.98769928 190.51320654  
Axis 0.47805755 -0.87809001 0.02046737  
Axis point 137.59865558 0.00000000 107.02177439  
Rotation angle (degrees) 171.31465259  
Shift along axis -63.08959256  
  
Average map value = 0.621 for 10778 atoms, 6372 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2643, overlap = 254.5  
steps = 36, shift = 0.0113, angle = 0.0158 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53423307 -0.83770901 -0.11330598 193.04375942  
-0.83152046 0.54489408 -0.10799903 181.37948690  
0.15221148 0.03651967 -0.98767277 190.51570115  
Axis 0.47796400 -0.87814094 0.02046726  
Axis point 137.58031560 0.00000000 107.03404892  
Rotation angle (degrees) 171.30459222  
Shift along axis -63.10944934  
  
Average map value = 0.621 for 10778 atoms, 6373 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2644, overlap = 254.5  
steps = 36, shift = 0.0435, angle = 0.0261 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53441044 -0.83754979 -0.11364611 193.08207862  
-0.83134711 0.54512795 -0.10815334 181.36495827  
0.15253544 0.03668118 -0.98761680 190.52339104  
Axis 0.47784785 -0.87820421 0.02046431  
Axis point 137.55983952 -0.00000000 107.06172396  
Rotation angle (degrees) 171.28330755  
Shift along axis -63.11268504  
  
Average map value = 0.621 for 10778 atoms, 6371 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2643, overlap = 254.5  
steps = 40, shift = 0.0534, angle = 0.048 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53402012 -0.83787905 -0.11305225 193.03603735  
-0.83169563 0.54464121 -0.10792576 181.37955809  
0.15200162 0.03639062 -0.98770985 190.51173641  
Axis 0.47809164 -0.87807105 0.02048447  
Axis point 137.60708031 0.00000000 107.01774605  
Rotation angle (degrees) 171.31919520  
Shift along axis -63.07269160  
  
Average map value = 0.621 for 10778 atoms, 6372 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2643, overlap = 254.5  
steps = 36, shift = 0.0174, angle = 0.034 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53432534 -0.83763102 -0.11344738 193.04950390  
-0.83143427 0.54501019 -0.10807673 181.37520009  
0.15235837 0.03657599 -0.98764803 190.51481068  
Axis 0.47790560 -0.87817259 0.02047290  
Axis point 137.56570794 0.00000000 107.04425636  
Rotation angle (degrees) 171.29539382  
Shift along axis -63.11890006  
  
Average map value = 0.621 for 10778 atoms, 6370 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2644, overlap = 254.5  
steps = 44, shift = 0.0396, angle = 0.0275 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53455174 -0.83744333 -0.11376603 193.08346437  
-0.83122938 0.54528988 -0.10824185 181.35985585  
0.15268184 0.03670489 -0.98759330 190.51796771  
Axis 0.47776453 -0.87824913 0.02048204  
Axis point 137.54062260 0.00000000 107.06964366  
Rotation angle (degrees) 171.27496808  
Shift along axis -63.12850882  
  
Average map value = 0.6211 for 10778 atoms, 6372 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2644, overlap = 254.5  
steps = 28, shift = 0.0179, angle = 0.0309 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53417318 -0.83770227 -0.11363769 193.07838314  
-0.83151908 0.54488711 -0.10804484 181.37046984  
0.15242908 0.03677734 -0.98762965 190.52791699  
Axis 0.47797602 -0.87813579 0.02040721  
Axis point 137.57887623 0.00000000 107.05539212  
Rotation angle (degrees) 171.28641153  
Shift along axis -63.09292096  
  
Average map value = 0.621 for 10778 atoms, 6370 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2644, overlap = 254.5  
steps = 36, shift = 0.00593, angle = 0.012 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53420979 -0.83770678 -0.11343215 193.08146460  
-0.83151691 0.54489173 -0.10803823 181.36737413  
0.15231257 0.03660576 -0.98765400 190.52347794  
Axis 0.47796820 -0.87813896 0.02045409  
Axis point 137.58891185 0.00000000 107.04592693  
Rotation angle (degrees) 171.29707214  
Shift along axis -63.08197421  
  
Average map value = 0.621 for 10778 atoms, 6371 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2643, overlap = 254.5  
steps = 36, shift = 0.0335, angle = 0.0118 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53418629 -0.83774742 -0.11324253 193.05071471  
-0.83156002 0.54483728 -0.10798106 181.37763141  
0.15215957 0.03648604 -0.98768201 190.51710518  
Axis 0.47799252 -0.87812530 0.02047201  
Axis point 137.59040303 0.00000000 107.03144128  
Rotation angle (degrees) 171.30824326  
Shift along axis -63.09522126  
  
Average map value = 0.621 for 10778 atoms, 6371 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2643, overlap = 254.5  
steps = 40, shift = 0.00419, angle = 0.0119 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53432366 -0.83764997 -0.11331531 193.05133732  
-0.83145166 0.54498757 -0.10805701 181.37515828  
0.15226935 0.03647887 -0.98766535 190.51501362  
Axis 0.47791425 -0.87816737 0.02049498  
Axis point 137.57463246 0.00000000 107.03857029  
Rotation angle (degrees) 171.30263818  
Shift along axis -63.11115736  
  
Average map value = 0.621 for 10778 atoms, 6370 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2644, overlap = 254.5  
steps = 36, shift = 0.0413, angle = 0.0311 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53452364 -0.83746284 -0.11375441 193.08725093  
-0.83125819 0.54525796 -0.10818137 181.36424434  
0.15262334 0.03673387 -0.98760126 190.52652087  
Axis 0.47778171 -0.87824038 0.02045657  
Axis point 137.54772289 0.00000000 107.06922469  
Rotation angle (degrees) 171.27719447  
Shift along axis -63.13032689  
  
Average map value = 0.621 for 10778 atoms, 6372 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2643, overlap = 254.5  
steps = 40, shift = 0.0574, angle = 0.037 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53419946 -0.83772840 -0.11332113 193.03677708  
-0.83154009 0.54486321 -0.10800374 181.38215380  
0.15222228 0.03653561 -0.98767051 190.51696887  
Axis 0.47798067 -0.87813193 0.02046428  
Axis point 137.57873798 0.00000000 107.03535415  
Rotation angle (degrees) 171.30364595  
Shift along axis -63.11081864  
  
Average map value = 0.621 for 10778 atoms, 6373 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2644, overlap = 254.5  
steps = 28, shift = 0.0756, angle = 0.0664 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53484315 -0.83722234 -0.11402265 193.09740620  
-0.83100109 0.54562156 -0.10832327 181.34873371  
0.15290384 0.03681708 -0.98755477 190.51351915  
Axis 0.47759512 -0.87834152 0.02047148  
Axis point 137.50870832 0.00000000 107.08241435  
Rotation angle (degrees) 171.26009938  
Shift along axis -63.16364926  
  
Average map value = 0.6211 for 10778 atoms, 6374 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2644, overlap = 254.5  
steps = 28, shift = 0.0195, angle = 0.0285 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53451459 -0.83746457 -0.11378421 193.10667482  
-0.83125479 0.54525506 -0.10822212 181.35855748  
0.15267357 0.03673745 -0.98759336 190.52777296  
Axis 0.47778362 -0.87823909 0.02046732  
Axis point 137.55353259 0.00000000 107.07436920  
Rotation angle (degrees) 171.27454058  
Shift along axis -63.11337667  
  
Average map value = 0.621 for 10778 atoms, 6371 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2643, overlap = 254.5  
steps = 28, shift = 0.079, angle = 0.0625 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53396496 -0.83790772 -0.11310030 193.03954088  
-0.83173962 0.54459069 -0.10784161 181.38869293  
0.15195465 0.03648644 -0.98771354 190.52387989  
Axis 0.47812046 -0.87805655 0.02043327  
Axis point 137.61440924 0.00000000 107.01941960  
Rotation angle (degrees) 171.31901526  
Shift along axis -63.08035045  
  
Average map value = 0.621 for 10778 atoms, 6374 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2643, overlap = 254.5  
steps = 40, shift = 0.0132, angle = 0.0097 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53406889 -0.83783556 -0.11314418 193.04554834  
-0.83165420 0.54470379 -0.10792918 181.38034449  
0.15205694 0.03645530 -0.98769895 190.51709199  
Axis 0.47806098 -0.87808816 0.02046666  
Axis point 137.60339708 0.00000000 107.02409694  
Rotation angle (degrees) 171.31450607  
Shift along axis -63.08114128  
  
Average map value = 0.621 for 10778 atoms, 6373 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2643, overlap = 254.5  
steps = 40, shift = 0.00743, angle = 0.029 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53428654 -0.83764308 -0.11354106 193.05001599  
-0.83146010 0.54498361 -0.10801204 181.37839838  
0.15235352 0.03669557 -0.98764435 190.51894431  
Axis 0.47792279 -0.87816446 0.02042041  
Axis point 137.56605848 0.00000000 107.04463853  
Rotation angle (degrees) 171.29238078  
Shift along axis -63.12658712  
  
Average map value = 0.621 for 10778 atoms, 6371 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2643, overlap = 254.5  
steps = 40, shift = 0.0102, angle = 0.0145 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53435080 -0.83763168 -0.11332251 193.04835046  
-0.83142409 0.54501781 -0.10811659 181.37277094  
0.15232464 0.03644697 -0.98765801 190.51102907  
Axis 0.47789785 -0.87817568 0.02052104  
Axis point 137.56861181 -0.00000000 107.04114475  
Rotation angle (degrees) 171.30065880  
Shift along axis -63.11028105  
  
Average map value = 0.621 for 10778 atoms, 6371 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2643, overlap = 254.5  
steps = 40, shift = 0.0277, angle = 0.0173 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53422280 -0.83769540 -0.11345494 193.07270081  
-0.83152697 0.54490312 -0.10790330 181.37776151  
0.15221201 0.03669652 -0.98766613 190.52318558  
Axis 0.47796414 -0.87814267 0.02038930  
Axis point 137.58942630 0.00000000 107.03642735  
Rotation angle (degrees) 171.29967589  
Shift along axis -63.10908954  
  
Average map value = 0.621 for 10778 atoms, 6370 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2644, overlap = 254.5  
steps = 44, shift = 0.0218, angle = 0.0141 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53428554 -0.83763711 -0.11358975 193.08970146  
-0.83144598 0.54499246 -0.10807607 181.36538598  
0.15243405 0.03670034 -0.98763174 190.52768873  
Axis 0.47791875 -0.87816626 0.02043745  
Axis point 137.57739236 0.00000000 107.05636427  
Rotation angle (degrees) 171.28813424  
Shift along axis -63.09387309  
  
Average map value = 0.621 for 10778 atoms, 6371 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2643, overlap = 254.5  
steps = 28, shift = 0.0836, angle = 0.08 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53341255 -0.83830889 -0.11273361 193.02054919  
-0.83208486 0.54399834 -0.10816758 181.39106689  
0.15200470 0.03610607 -0.98771982 190.51226250  
Axis 0.47842024 -0.87788843 0.02063925  
Axis point 137.65286112 0.00000000 107.02497294  
Rotation angle (degrees) 171.32779230  
Shift along axis -62.96414970  
  
Average map value = 0.621 for 10778 atoms, 6374 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2644, overlap = 254.5  
steps = 28, shift = 0.0979, angle = 0.107 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53463785 -0.83739113 -0.11374566 193.09759396  
-0.83116265 0.54537527 -0.10832401 181.35112888  
0.15274360 0.03662711 -0.98758664 190.51557860  
Axis 0.47771800 -0.87827339 0.02052730  
Axis point 137.53828943 0.00000000 107.07423288  
Rotation angle (degrees) 171.27384538  
Shift along axis -63.11890471  
  
Average map value = 0.621 for 10778 atoms, 6373 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2643, overlap = 254.5  
steps = 40, shift = 0.0307, angle = 0.0457 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53415102 -0.83774804 -0.11340420 193.07847112  
-0.83156273 0.54482797 -0.10800712 181.36793783  
0.15226850 0.03661067 -0.98766061 190.52238509  
Axis 0.47800146 -0.87812108 0.02044413  
Axis point 137.59402716 0.00000000 107.04198659  
Rotation angle (degrees) 171.29927059  
Shift along axis -63.07615369  
  
Average map value = 0.621 for 10778 atoms, 6370 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2644, overlap = 254.5  
steps = 36, shift = 0.0108, angle = 0.0121 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53429384 -0.83764691 -0.11347844 193.08777033  
-0.83145169 0.54498367 -0.10807651 181.36562836  
0.15237382 0.03660731 -0.98764449 190.52294996  
Axis 0.47792045 -0.87816472 0.02046409  
Axis point 137.58228825 0.00000000 107.05029950  
Rotation angle (degrees) 171.29378027  
Shift along axis -63.08942318  
  
Average map value = 0.621 for 10778 atoms, 6371 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2644, overlap = 254.5  
steps = 28, shift = 0.00998, angle = 0.013 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53422314 -0.83766307 -0.11369182 193.08647229  
-0.83147830 0.54494568 -0.10806327 181.36892385  
0.15247644 0.03680247 -0.98762140 190.53239049  
Axis 0.47794631 -0.87815201 0.02040500  
Axis point 137.57542776 0.00000000 107.06106903  
Rotation angle (degrees) 171.28322432  
Shift along axis -63.09670370  
  
Average map value = 0.621 for 10778 atoms, 6371 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2643, overlap = 254.5  
steps = 40, shift = 0.0582, angle = 0.042 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53399427 -0.83789350 -0.11306730 193.03568549  
-0.83171447 0.54461700 -0.10790269 181.38212730  
0.15198930 0.03642037 -0.98771065 190.51356565  
Axis 0.47810506 -0.87806409 0.02046951  
Axis point 137.60912396 0.00000000 107.01746633  
Rotation angle (degrees) 171.31903602  
Shift along axis -63.07407440  
  
Average map value = 0.621 for 10778 atoms, 6372 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2644, overlap = 254.5  
steps = 36, shift = 0.0573, angle = 0.0466 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53438846 -0.83756614 -0.11362897 193.08510766  
-0.83136760 0.54510243 -0.10812440 181.36554435  
0.15250073 0.03668710 -0.98762194 190.52632177  
Axis 0.47786118 -0.87819719 0.02045444  
Axis point 137.56469303 -0.00000000 107.06054804  
Rotation angle (degrees) 171.28494854  
Shift along axis -63.10972456  
  
Average map value = 0.621 for 10778 atoms, 6371 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2643, overlap = 254.5  
steps = 40, shift = 0.056, angle = 0.0451 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53400853 -0.83788206 -0.11308470 193.03674866  
-0.83170224 0.54463411 -0.10791066 181.38192361  
0.15200616 0.03642767 -0.98770778 190.51389259  
Axis 0.47809641 -0.87806880 0.02046962  
Axis point 137.60743026 0.00000000 107.01884482  
Rotation angle (degrees) 171.31795207  
Shift along axis -63.07588502  
  
Average map value = 0.621 for 10778 atoms, 6372 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2644, overlap = 254.5  
steps = 36, shift = 0.0393, angle = 0.0359 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53429104 -0.83764090 -0.11353595 193.07012742  
-0.83144644 0.54499000 -0.10808493 181.36823679  
0.15241228 0.03665033 -0.98763696 190.51950655  
Axis 0.47791854 -0.87816598 0.02045424  
Axis point 137.57106069 0.00000000 107.05059826  
Rotation angle (degrees) 171.29062558  
Shift along axis -63.10269120  
  
Average map value = 0.621 for 10778 atoms, 6370 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5907, correlation about mean = 0.3438, overlap = 279.1  
steps = 44, shift = 0.337, angle = 0.241 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.49535462 0.86162871 -0.11054133 190.61195681  
0.67146087 -0.46051048 -0.58057734 199.42255838  
-0.55114757 0.21336745 -0.80666612 184.19746072  
Axis 0.85581132 0.47493959 -0.20498628  
Axis point 0.00000000 13.86864226 128.56314159  
Rotation angle (degrees) 152.36384948  
Shift along axis 220.08358560  
  
Average map value = 0.6806 for 10778 atoms, 5984 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5907, correlation about mean = 0.3438, overlap = 279.1  
steps = 40, shift = 0.0324, angle = 0.0146 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.49549815 0.86157210 -0.11033914 190.58306337  
0.67146281 -0.46051656 -0.58057028 199.43320787  
-0.55101618 0.21358282 -0.80669888 184.19337537  
Axis 0.85585144 0.47491356 -0.20487902  
Axis point 0.00000000 13.88477110 128.54942719  
Rotation angle (degrees) 152.35738480  
Shift along axis 220.08696636  
  
Average map value = 0.6806 for 10778 atoms, 5983 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5738, correlation about mean = 0.3382, overlap = 268  
steps = 40, shift = 1.19, angle = 1.14 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.49215113 -0.84728133 0.19975292 185.85957607  
-0.72055547 0.52525949 0.45266095 169.55566703  
-0.48845341 0.07884463 -0.86902033 188.86940022  
Axis -0.47117897 0.86745372 0.15973235  
Axis point 159.78719221 0.00000000 51.62942566  
Rotation angle (degrees) 156.62908660  
Shift along axis 89.67712291  
  
Average map value = 0.6536 for 10778 atoms, 6075 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5738, correlation about mean = 0.3382, overlap = 268  
steps = 44, shift = 0.0138, angle = 0.00919 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.49214813 -0.84729204 0.19971489 185.86650803  
-0.72064369 0.52525054 0.45253088 169.54942286  
-0.48832629 0.07878905 -0.86909681 188.88064864  
Axis -0.47119837 0.86745410 0.15967306  
Axis point 159.78776548 0.00000000 51.64874152  
Rotation angle (degrees) 156.63503918  
Shift along axis 89.65549533  
  
Average map value = 0.6536 for 10778 atoms, 6076 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2644, overlap = 254.5  
steps = 40, shift = 0.574, angle = 0.626 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53420938 -0.83769019 -0.11355659 193.07058148  
-0.83150583 0.54491011 -0.10803091 181.37174889  
0.15237452 0.03671193 -0.98764052 190.52469034  
Axis 0.47796188 -0.87814315 0.02042165  
Axis point 137.57797685 0.00000000 107.04986103  
Rotation angle (degrees) 171.29096245  
Shift along axis -63.09915262  
  
Average map value = 0.621 for 10778 atoms, 6370 outside contour  

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2643, overlap = 254.5  
steps = 44, shift = 0.0427, angle = 0.03 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53407485 -0.83783922 -0.11308897 193.03321112  
-0.83165510 0.54470146 -0.10793415 181.38200177  
0.15203114 0.03640619 -0.98770475 190.51112837  
Axis 0.47806072 -0.87808794 0.02048206  
Axis point 137.60043610 0.00000000 107.01930863  
Rotation angle (degrees) 171.31717752  
Shift along axis -63.08569084  
  
Average map value = 0.621 for 10778 atoms, 6371 outside contour  

> select add #1

2 models selected  

> select subtract #1

Nothing selected  

> select add #4

10778 atoms, 11624 bonds, 336 residues, 1 model selected  

> view matrix models
> #4,0.11164,-0.34466,0.93206,794.58,-0.96195,0.19787,0.18839,-326.28,-0.24936,-0.91763,-0.30946,361.91

> fitmap #4 inMap #2 resolution 15 metric correlation

Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2773_004_volume_map.mrc
using 2353 points  
correlation = 0.5458, correlation about mean = 0.2644, overlap = 254.5  
steps = 52, shift = 7.05, angle = 0.0234 degrees  
  
Position of RNAFramework.pdb map 15 (#1) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53418288 -0.83772126 -0.11345202 193.08607997  
-0.83153736 0.54486688 -0.10800629 181.36637483  
0.15229537 0.03664457 -0.98765523 190.52462277  
Axis 0.47798220 -0.87813180 0.02043399  
Axis point 137.59258411 0.00000000 107.04485658  
Rotation angle (degrees) 171.29691267  
Shift along axis -63.07869342  
  
Average map value = 0.621 for 10778 atoms, 6370 outside contour  

> view matrix models
> #4,0.11134,-0.34493,0.932,794.93,-0.96197,0.19798,0.18819,-326.22,-0.24943,-0.91751,-0.30977,361.79

> fitmap #4 inMap #2

Fit molecule RNAFramework.pdb (#4) to map
cryosparc_P12_J2773_004_volume_map.mrc (#2) using 10778 atoms  
average map value = 0.6226, steps = 56  
shifted from previous position = 6.36  
rotated from previous position = 0.949 degrees  
atoms outside contour = 6385, contour level = 0.31215  
  
Position of RNAFramework.pdb (#4) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53190292 -0.83704389 -0.12820463 193.24700721  
-0.83033860 0.54525913 -0.11502149 181.21356652  
0.16618274 0.04527308 -0.98505492 189.42969289  
Axis 0.47811174 -0.87807128 0.01999992  
Axis point 136.79314203 0.00000000 107.51392871  
Rotation angle (degrees) 170.34977617  
Shift along axis -62.93618704  
  

> view matrix models
> #4,0.09844,-0.3529,0.93047,796.47,-0.96468,0.19575,0.1763,-328.48,-0.24435,-0.91496,-0.32117,362.36

> fitmap #4 inMap #2

Fit molecule RNAFramework.pdb (#4) to map
cryosparc_P12_J2773_004_volume_map.mrc (#2) using 10778 atoms  
average map value = 0.6226, steps = 56  
shifted from previous position = 8.01  
rotated from previous position = 0.0179 degrees  
atoms outside contour = 6388, contour level = 0.31215  
  
Position of RNAFramework.pdb (#4) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53169311 -0.83715480 -0.12835074 193.25224117  
-0.83047804 0.54507030 -0.11490977 181.22369450  
0.16615740 0.04549583 -0.98504893 189.44546918  
Axis 0.47821674 -0.87801624 0.01990540  
Axis point 136.80700667 0.00000000 107.51855505  
Rotation angle (degrees) 170.34516858  
Shift along axis -62.92990353  
  

> view matrix models
> #4,0.098542,-0.35305,0.9304,794.71,-0.96472,0.19547,0.17635,-327.08,-0.24412,-0.91496,-0.32133,362.64

> color zone #2 near sel & #4 distance 17.8

> undo

> fitmap #4 inMap #2

Fit molecule RNAFramework.pdb (#4) to map
cryosparc_P12_J2773_004_volume_map.mrc (#2) using 10778 atoms  
average map value = 0.6226, steps = 52  
shifted from previous position = 6.05  
rotated from previous position = 0.0702 degrees  
atoms outside contour = 6393, contour level = 0.31215  
  
Position of RNAFramework.pdb (#4) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53089169 -0.83757954 -0.12889588 193.25725059  
-0.83102426 0.54434298 -0.11440748 181.26800321  
0.16598889 0.04637771 -0.98503622 189.51079741  
Axis 0.47862090 -0.87780479 0.01951359  
Axis point 136.85689145 0.00000000 107.53222240  
Rotation angle (degrees) 170.33035193  
Shift along axis -62.92292655  
  

> fitmap #4 inMap #2

Fit molecule RNAFramework.pdb (#4) to map
cryosparc_P12_J2773_004_volume_map.mrc (#2) using 10778 atoms  
average map value = 0.6226, steps = 40  
shifted from previous position = 0.0431  
rotated from previous position = 0.0382 degrees  
atoms outside contour = 6392, contour level = 0.31215  
  
Position of RNAFramework.pdb (#4) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53122800 -0.83735074 -0.12899677 193.29376853  
-0.83071752 0.54471496 -0.11486372 181.25352503  
0.16644765 0.04614114 -0.98496991 189.50375859  
Axis 0.47842325 -0.87790813 0.01971050  
Axis point 136.82922571 0.00000000 107.56771628  
Rotation angle (degrees) 170.31297517  
Shift along axis -62.91249648  
  

> fitmap #4 inMap #2

Fit molecule RNAFramework.pdb (#4) to map
cryosparc_P12_J2773_004_volume_map.mrc (#2) using 10778 atoms  
average map value = 0.6226, steps = 28  
shifted from previous position = 0.122  
rotated from previous position = 0.113 degrees  
atoms outside contour = 6394, contour level = 0.31215  
  
Position of RNAFramework.pdb (#4) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.52995005 -0.83804600 -0.12973618 193.31287857  
-0.83162013 0.54352752 -0.11395372 181.32047194  
0.16601360 0.04750153 -0.98497850 189.59861916  
Axis 0.47907878 -0.87756479 0.01906718  
Axis point 136.92454516 -0.00000000 107.57251801  
Rotation angle (degrees) 170.29903562  
Shift along axis -62.89325427  
  

> fitmap #4 inMap #2

Fit molecule RNAFramework.pdb (#4) to map
cryosparc_P12_J2773_004_volume_map.mrc (#2) using 10778 atoms  
average map value = 0.6226, steps = 40  
shifted from previous position = 0.0201  
rotated from previous position = 0.0165 degrees  
atoms outside contour = 6394, contour level = 0.31215  
  
Position of RNAFramework.pdb (#4) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.52978157 -0.83816427 -0.12966018 193.29427727  
-0.83176399 0.54334009 -0.11379750 181.32256783  
0.16583053 0.04755894 -0.98500657 189.59584147  
Axis 0.47917684 -0.87751256 0.01900678  
Axis point 136.93631002 0.00000000 107.55597960  
Rotation angle (degrees) 170.30703303  
Shift along axis -62.88708304  
  

> fitmap #4 inMap #2

Fit molecule RNAFramework.pdb (#4) to map
cryosparc_P12_J2773_004_volume_map.mrc (#2) using 10778 atoms  
average map value = 0.6226, steps = 36  
shifted from previous position = 0.0414  
rotated from previous position = 0.0344 degrees  
atoms outside contour = 6394, contour level = 0.31215  
  
Position of RNAFramework.pdb (#4) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.52938667 -0.83838035 -0.12987592 193.28437128  
-0.83204256 0.54297091 -0.11352285 181.34468762  
0.16569414 0.04796490 -0.98500983 189.62636808  
Axis 0.47937977 -0.87740588 0.01881388  
Axis point 136.95872688 -0.00000000 107.55754702  
Rotation angle (degrees) 170.30321457  
Shift along axis -62.88867039  
  

> view matrix models
> #4,0.099848,-0.35466,0.92965,794.25,-0.96521,0.1924,0.17707,-327.37,-0.24167,-0.91499,-0.32311,364.41

> fitmap #4 inMap #2

Fit molecule RNAFramework.pdb (#4) to map
cryosparc_P12_J2773_004_volume_map.mrc (#2) using 10778 atoms  
average map value = 0.6226, steps = 68  
shifted from previous position = 5.22  
rotated from previous position = 0.203 degrees  
atoms outside contour = 6389, contour level = 0.31215  
  
Position of RNAFramework.pdb (#4) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53173684 -0.83713082 -0.12832590 193.25510142  
-0.83044856 0.54511055 -0.11493188 181.22106584  
0.16616478 0.04545464 -0.98504959 189.44175652  
Axis 0.47819455 -0.87802792 0.01992326  
Axis point 136.80569671 -0.00000000 107.51760880  
Rotation angle (degrees) 170.34587574  
Shift along axis -62.92932183  
  

> vop gaussian #2 sdev 8.88

Opened cryosparc_P12_J2773_004_volume_map.mrc gaussian as #5, grid size
128,128,128, pixel 2.96, shown at step 1, values float32  

> undo

[Repeated 5 time(s)]

> close #5

> show #!2 models

> fitmap #4 inMap #2

Fit molecule RNAFramework.pdb (#4) to map
cryosparc_P12_J2773_004_volume_map.mrc (#2) using 10778 atoms  
average map value = 0.6226, steps = 44  
shifted from previous position = 0.962  
rotated from previous position = 1.03 degrees  
atoms outside contour = 6395, contour level = 0.31215  
  
Position of RNAFramework.pdb (#4) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.52914486 -0.83856373 -0.12967738 193.24722886  
-0.83226637 0.54268456 -0.11325109 181.34890410  
0.16534213 0.04799998 -0.98506727 189.61838733  
Axis 0.47952738 -0.87732707 0.01872702  
Axis point 136.97742982 0.00000000 107.52488922  
Rotation angle (degrees) 170.32057303  
Shift along axis -62.88397659  
  

> select add #4

10778 atoms, 11624 bonds, 336 residues, 1 model selected  

> view matrix models
> #4,0.10029,-0.3546,0.92962,792.67,-0.96521,0.19208,0.17739,-325.87,-0.24146,-0.91507,-0.32301,364.3

> fitmap #4 inMap #2

Fit molecule RNAFramework.pdb (#4) to map
cryosparc_P12_J2773_004_volume_map.mrc (#2) using 10778 atoms  
average map value = 0.6226, steps = 52  
shifted from previous position = 3.55  
rotated from previous position = 0.175 degrees  
atoms outside contour = 6391, contour level = 0.31215  
  
Position of RNAFramework.pdb (#4) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53120309 -0.83742956 -0.12858704 193.25224617  
-0.83082795 0.54460800 -0.11457181 181.25639005  
0.16597531 0.04597290 -0.98505748 189.47200844  
Axis 0.47847078 -0.87788303 0.01967475  
Axis point 136.84453472 0.00000000 107.51472475  
Rotation angle (degrees) 170.34189502  
Shift along axis -62.92854182  
  

> ui mousemode right "rotate selected models"

> view matrix models
> #4,0.12275,-0.52685,0.84105,787.07,-0.88557,0.3244,0.33246,-324.1,-0.448,-0.78562,-0.42674,364.9

> fitmap #4 inMap #2

Fit molecule RNAFramework.pdb (#4) to map
cryosparc_P12_J2773_004_volume_map.mrc (#2) using 10778 atoms  
average map value = 0.6226, steps = 76  
shifted from previous position = 3.5  
rotated from previous position = 16.1 degrees  
atoms outside contour = 6395, contour level = 0.31215  
  
Position of RNAFramework.pdb (#4) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.52910670 -0.83858293 -0.12970890 193.24033137  
-0.83228718 0.54265207 -0.11325382 181.35107916  
0.16535948 0.04803179 -0.98506281 189.61962927  
Axis 0.47954537 -0.87731741 0.01871893  
Axis point 136.97519165 0.00000000 107.52652574  
Rotation angle (degrees) 170.31884619  
Shift along axis -62.88547644  
  

> fitmap #4 inMap #2

Fit molecule RNAFramework.pdb (#4) to map
cryosparc_P12_J2773_004_volume_map.mrc (#2) using 10778 atoms  
average map value = 0.6226, steps = 40  
shifted from previous position = 0.111  
rotated from previous position = 0.11 degrees  
atoms outside contour = 6395, contour level = 0.31215  
  
Position of RNAFramework.pdb (#4) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53037666 -0.83783796 -0.12933592 193.28646569  
-0.83134087 0.54389704 -0.11422798 181.29135134  
0.16604992 0.04693848 -0.98499937 189.55134496  
Axis 0.47887030 -0.87767338 0.01930466  
Axis point 136.89110691 0.00000000 107.55483250  
Rotation angle (degrees) 170.31229878  
Shift along axis -62.89622149  
  

> fitmap #4 inMap #2

Fit molecule RNAFramework.pdb (#4) to map
cryosparc_P12_J2773_004_volume_map.mrc (#2) using 10778 atoms  
average map value = 0.6226, steps = 40  
shifted from previous position = 0.105  
rotated from previous position = 0.0954 degrees  
atoms outside contour = 6393, contour level = 0.31215  
  
Position of RNAFramework.pdb (#4) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.52926826 -0.83844308 -0.12995359 193.28720234  
-0.83211429 0.54286534 -0.11350194 181.34857492  
0.16571217 0.04806335 -0.98500200 189.63353006  
Axis 0.47943778 -0.87737490 0.01878039  
Axis point 136.96502607 -0.00000000 107.56220773  
Rotation angle (degrees) 170.29969884  
Shift along axis -62.88011042  
  

> fitmap #4 inMap #2

Fit molecule RNAFramework.pdb (#4) to map
cryosparc_P12_J2773_004_volume_map.mrc (#2) using 10778 atoms  
average map value = 0.6226, steps = 44  
shifted from previous position = 0.0195  
rotated from previous position = 0.0142 degrees  
atoms outside contour = 6392, contour level = 0.31215  
  
Position of RNAFramework.pdb (#4) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.52942533 -0.83835713 -0.12986823 193.28916294  
-0.83200082 0.54301306 -0.11362708 181.33802457  
0.16578017 0.04789351 -0.98499883 189.61837429  
Axis 0.47935653 -0.87741750 0.01886410  
Axis point 136.95425476 -0.00000000 107.56116607  
Rotation angle (degrees) 170.30074936  
Shift along axis -62.87775456  
  

> fitmap #4 inMap #2

Fit molecule RNAFramework.pdb (#4) to map
cryosparc_P12_J2773_004_volume_map.mrc (#2) using 10778 atoms  
average map value = 0.6225, steps = 28  
shifted from previous position = 0.0947  
rotated from previous position = 0.0863 degrees  
atoms outside contour = 6392, contour level = 0.31215  
  
Position of RNAFramework.pdb (#4) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.52840892 -0.83900084 -0.12985079 193.23139885  
-0.83278411 0.54196525 -0.11288909 181.38379555  
0.16508861 0.04848616 -0.98508598 189.66284489  
Axis 0.47991408 -0.87712067 0.01848794  
Axis point 137.02747640 0.00000000 107.52509258  
Rotation angle (degrees) 170.32092736  
Shift along axis -62.85453356  
  

> fitmap #4 inMap #2

Fit molecule RNAFramework.pdb (#4) to map
cryosparc_P12_J2773_004_volume_map.mrc (#2) using 10778 atoms  
average map value = 0.6226, steps = 40  
shifted from previous position = 0.172  
rotated from previous position = 0.158 degrees  
atoms outside contour = 6394, contour level = 0.31215  
  
Position of RNAFramework.pdb (#4) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53031734 -0.83791946 -0.12905083 193.24133936  
-0.83144074 0.54378200 -0.11404865 181.28718225  
0.16573906 0.04681624 -0.98505754 189.53162525  
Axis 0.47892456 -0.87764413 0.01928837  
Axis point 136.89388468 0.00000000 107.52008015  
Rotation angle (degrees) 170.33170630  
Shift along axis -62.90185149  
  

> fitmap #4 inMap #2

Fit molecule RNAFramework.pdb (#4) to map
cryosparc_P12_J2773_004_volume_map.mrc (#2) using 10778 atoms  
average map value = 0.6226, steps = 40  
shifted from previous position = 0.00903  
rotated from previous position = 0.0104 degrees  
atoms outside contour = 6393, contour level = 0.31215  
  
Position of RNAFramework.pdb (#4) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53044188 -0.83784621 -0.12901455 193.24584193  
-0.83134950 0.54390357 -0.11413397 181.28252563  
0.16579815 0.04671484 -0.98505241 189.52679273  
Axis 0.47885865 -0.87767894 0.01934118  
Axis point 136.88617931 -0.00000000 107.52305641  
Rotation angle (degrees) 170.33133830  
Shift along axis -62.90474039  
  

> fitmap #4 inMap #2

Fit molecule RNAFramework.pdb (#4) to map
cryosparc_P12_J2773_004_volume_map.mrc (#2) using 10778 atoms  
average map value = 0.6226, steps = 40  
shifted from previous position = 0.00663  
rotated from previous position = 0.00906 degrees  
atoms outside contour = 6394, contour level = 0.31215  
  
Position of RNAFramework.pdb (#4) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53054871 -0.83778287 -0.12898662 193.24671481  
-0.83127026 0.54400855 -0.11421083 181.27865681  
0.16585366 0.04662842 -0.98504716 189.52230498  
Axis 0.47880178 -0.87770894 0.01938738  
Axis point 136.87783103 -0.00000000 107.52571314  
Rotation angle (degrees) 170.33075876  
Shift along axis -62.90868588  
  

> fitmap #4 inMap #2

Fit molecule RNAFramework.pdb (#4) to map
cryosparc_P12_J2773_004_volume_map.mrc (#2) using 10778 atoms  
average map value = 0.6226, steps = 40  
shifted from previous position = 0.00255  
rotated from previous position = 0.00596 degrees  
atoms outside contour = 6394, contour level = 0.31215  
  
Position of RNAFramework.pdb (#4) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53061436 -0.83774063 -0.12899092 193.24739434  
-0.83121746 0.54407713 -0.11426838 181.27705774  
0.16590824 0.04658715 -0.98503992 189.52120946  
Axis 0.47876520 -0.87772828 0.01941535  
Axis point 136.87137788 -0.00000000 107.52969861  
Rotation angle (degrees) 170.32902441  
Shift along axis -62.91225338  
  

> fitmap #4 inMap #2

Fit molecule RNAFramework.pdb (#4) to map
cryosparc_P12_J2773_004_volume_map.mrc (#2) using 10778 atoms  
average map value = 0.6226, steps = 40  
shifted from previous position = 0.0154  
rotated from previous position = 0.0134 degrees  
atoms outside contour = 6391, contour level = 0.31215  
  
Position of RNAFramework.pdb (#4) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53045111 -0.83782579 -0.12910920 193.24241393  
-0.83132018 0.54393221 -0.11421111 181.28407307  
0.16591563 0.04674776 -0.98503107 189.53300530  
Axis 0.47884554 -0.87768581 0.01935391  
Axis point 136.87624110 -0.00000000 107.53505785  
Rotation angle (degrees) 170.32439089  
Shift along axis -62.90898552  
  

> fitmap #4 inMap #2

Fit molecule RNAFramework.pdb (#4) to map
cryosparc_P12_J2773_004_volume_map.mrc (#2) using 10778 atoms  
average map value = 0.6226, steps = 28  
shifted from previous position = 0.0718  
rotated from previous position = 0.0432 degrees  
atoms outside contour = 6393, contour level = 0.31215  
  
Position of RNAFramework.pdb (#4) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53095900 -0.83753101 -0.12893396 193.29818267  
-0.83094869 0.54442384 -0.11457148 181.25869633  
0.16615185 0.04630484 -0.98501217 189.50458316  
Axis 0.47857787 -0.87782675 0.01958123  
Axis point 136.86336984 0.00000000 107.54403816  
Rotation angle (degrees) 170.32394045  
Shift along axis -62.89476797  
  

> fitmap #4 inMap #2

Fit molecule RNAFramework.pdb (#4) to map
cryosparc_P12_J2773_004_volume_map.mrc (#2) using 10778 atoms  
average map value = 0.6226, steps = 40  
shifted from previous position = 0.099  
rotated from previous position = 0.0775 degrees  
atoms outside contour = 6394, contour level = 0.31215  
  
Position of RNAFramework.pdb (#4) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53009082 -0.83797768 -0.12960230 193.29560725  
-0.83152881 0.54364900 -0.11404061 181.31196808  
0.16602161 0.04731626 -0.98498607 189.58365265  
Axis 0.47901023 -0.87760053 0.01914436  
Axis point 136.90971400 0.00000000 107.56638492  
Rotation angle (degrees) 170.30360307  
Shift along axis -62.89944955  
  

> fitmap #4 inMap #2

Fit molecule RNAFramework.pdb (#4) to map
cryosparc_P12_J2773_004_volume_map.mrc (#2) using 10778 atoms  
average map value = 0.6226, steps = 40  
shifted from previous position = 0.0419  
rotated from previous position = 0.0343 degrees  
atoms outside contour = 6393, contour level = 0.31215  
  
Position of RNAFramework.pdb (#4) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.52974331 -0.83820808 -0.12953326 193.25968399  
-0.83182280 0.54327514 -0.11367765 181.32432651  
0.16565769 0.04752884 -0.98503710 189.59123822  
Axis 0.47920853 -0.87749581 0.01898112  
Axis point 136.93313178 -0.00000000 107.53913739  
Rotation angle (degrees) 170.31677429  
Shift along axis -62.90099425  
  

> fitmap #4 inMap #2

Fit molecule RNAFramework.pdb (#4) to map
cryosparc_P12_J2773_004_volume_map.mrc (#2) using 10778 atoms  
average map value = 0.6226, steps = 28  
shifted from previous position = 0.0615  
rotated from previous position = 0.0357 degrees  
atoms outside contour = 6393, contour level = 0.31215  
  
Position of RNAFramework.pdb (#4) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53017505 -0.83796402 -0.12934576 193.30043256  
-0.83151945 0.54368480 -0.11393813 181.29954192  
0.16579934 0.04714646 -0.98503164 189.55796749  
Axis 0.47898499 -0.87761390 0.01916293  
Axis point 136.92199640 0.00000000 107.53717401  
Rotation angle (degrees) 170.31960764  
Shift along axis -62.89050742  
  

> fitmap #4 inMap #2

Fit molecule RNAFramework.pdb (#4) to map
cryosparc_P12_J2773_004_volume_map.mrc (#2) using 10778 atoms  
average map value = 0.6226, steps = 28  
shifted from previous position = 0.0703  
rotated from previous position = 0.0434 degrees  
atoms outside contour = 6394, contour level = 0.31215  
  
Position of RNAFramework.pdb (#4) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.52973103 -0.83815780 -0.12990828 193.31024775  
-0.83176169 0.54333369 -0.11384481 181.33352954  
0.16600342 0.04774570 -0.98496841 189.61852239  
Axis 0.47918674 -0.87750801 0.01896726  
Axis point 136.93416513 0.00000000 107.58002936  
Rotation angle (degrees) 170.29303871  
Shift along axis -62.89337370  
  

> fitmap #4 inMap #2

Fit molecule RNAFramework.pdb (#4) to map
cryosparc_P12_J2773_004_volume_map.mrc (#2) using 10778 atoms  
average map value = 0.6226, steps = 40  
shifted from previous position = 0.0381  
rotated from previous position = 0.0225 degrees  
atoms outside contour = 6394, contour level = 0.31215  
  
Position of RNAFramework.pdb (#4) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.52988676 -0.83811466 -0.12955101 193.29696583  
-0.83170482 0.54342707 -0.11381466 181.31707977  
0.16579122 0.04743942 -0.98501895 189.58610908  
Axis 0.47912775 -0.87753853 0.01904529  
Axis point 136.93521963 0.00000000 107.54883253  
Rotation angle (degrees) 170.31223978  
Shift along axis -62.88805910  
  

> fitmap #4 inMap #2

Fit molecule RNAFramework.pdb (#4) to map
cryosparc_P12_J2773_004_volume_map.mrc (#2) using 10778 atoms  
average map value = 0.6226, steps = 40  
shifted from previous position = 0.0251  
rotated from previous position = 0.0206 degrees  
atoms outside contour = 6395, contour level = 0.31215  
  
Position of RNAFramework.pdb (#4) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.52963879 -0.83823915 -0.12975942 193.29019466  
-0.83185345 0.54321275 -0.11375147 181.32886535  
0.16583787 0.04769372 -0.98499881 189.60610643  
Axis 0.47924717 -0.87747526 0.01895582  
Axis point 136.94085879 0.00000000 107.56081005  
Rotation angle (degrees) 170.30308708  
Shift along axis -62.88367546  
  

> fitmap #4 inMap #2

Fit molecule RNAFramework.pdb (#4) to map
cryosparc_P12_J2773_004_volume_map.mrc (#2) using 10778 atoms  
average map value = 0.6225, steps = 28  
shifted from previous position = 0.106  
rotated from previous position = 0.101 degrees  
atoms outside contour = 6392, contour level = 0.31215  
  
Position of RNAFramework.pdb (#4) relative to
cryosparc_P12_J2773_004_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.52843581 -0.83898094 -0.12986988 193.23217232  
-0.83276475 0.54199510 -0.11288860 181.38201811  
0.16510018 0.04849678 -0.98508352 189.66121991  
Axis 0.47989887 -0.87712906 0.01848460  
Axis point 137.02462183 0.00000000 107.52489227  
Rotation angle (degrees) 170.32000494  
Shift along axis -62.85772700  
  

> isolde start

> set selectionWidth 4

Done loading forcefield  

> isolde set simFidelityMode Medium/Medium

ISOLDE: setting sim fidelity mode to Medium/Medium  
nonbonded_cutoff_distance = 0.900000  
use_gbsa = True  
gbsa_cutoff = 1.100000  
ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
chains...  
Opened RNAFramework.pdb map 15 as #1, grid size 49,43,35, pixel 5, shown at
level 0.038, step 1, values float32  
Chain information for RNAFramework.pdb  
---  
Chain | Description  
4.2/A | No description available  
  

> isolde sim start /A

ISOLDE: started sim  

> isolde sim pause

> isolde sim resume

> isolde sim stop discardTo start

Sim termination reason: None  
reverting to start  
ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
chains...  
ISOLDE: stopped sim  

> isolde sim start /A

> isolde stepto next

> isolde stepto /A:1

> isolde stepto prev

[Repeated 57 time(s)]

> isolde sim start /A:279

ISOLDE: started sim  

> close #4

Sim termination reason: model deleted  
ISOLDE: model deleted during running simulation.  

> hide #!2 models

> show #!2 models

> fitmap #4 inMap #2 search 500 resolution 15

No atoms or maps for #4  

> close

> open
> /Users/francescappadoo/Downloads/cryosparc_P12_J2803_class_02_00122_volume.mrc

Opened cryosparc_P12_J2803_class_02_00122_volume.mrc as #1, grid size
128,128,128, pixel 2.96, shown at level 0.0617, step 1, values float32  

> open
> /Users/francescappadoo/Downloads/cryosparc_P12_J2803_class_04_00122_volume.mrc

Opened cryosparc_P12_J2803_class_04_00122_volume.mrc as #2, grid size
128,128,128, pixel 2.96, shown at level 0.0457, step 1, values float32  

> open
> /Users/francescappadoo/Downloads/cryosparc_P12_J2803_class_03_00122_volume.mrc

Opened cryosparc_P12_J2803_class_03_00122_volume.mrc as #3, grid size
128,128,128, pixel 2.96, shown at level 0.0375, step 1, values float32  

> tile

3 models tiled  

> surface dust #1 size 29.6

> surface dust #2 size 29.6

> surface dust #3 size 29.6

> volume #1 level 0.474

> volume #2 level 0.2388

> volume #3 level 0.1425

> tile

3 models tiled  

> tile

3 models tiled  

> volume #3 level 0.1634

> volume #3 level 0.1844

> volume #2 level 0.246

> volume #1 level 0.3936

> volume #2 level 0.246

> volume #3 level 0.1669

> tile

3 models tiled  

> tile

3 models tiled  

> tile

3 models tiled  

> open
> /Users/francescappadoo/Downloads/cryosparc_P12_J2806_class_07_00122_volume.mrc

Opened cryosparc_P12_J2806_class_07_00122_volume.mrc as #4, grid size
128,128,128, pixel 2.96, shown at level 0.0543, step 1, values float32  

> hide #!1 models

> hide #!2 models

> hide #!3 models

> tile

1 model tiled  

> surface dust #4 size 29.6

> volume #4 level 0.285

> tile

1 model tiled  

> tile

1 model tiled  

> volume #4 level 0.2698

> tile

1 model tiled  

> open
> /Users/francescappadoo/Downloads/rnacomposer-2024-07-05-171619/RNAFramework.pdb

Chain information for RNAFramework.pdb #5  
---  
Chain | Description  
A | No description available  
  

> tile

2 models tiled  

> select add #5

10778 atoms, 11624 bonds, 336 residues, 1 model selected  

> ui mousemode right "rotate selected models"

> view matrix models
> #5,0.86474,-0.39715,-0.3074,316.77,-0.31872,0.039053,-0.94705,168.76,0.38812,0.91692,-0.092806,168.38

> transparency #4.1 50

> fitmap #5 inMap #4 search 200 resolution 17

Opened RNAFramework.pdb map 17 as #6, grid size 40,35,46, pixel 5.67, shown at
level 0.0337, step 1, values float32  
Found 49 unique fits from 200 random placements having fraction of points
inside contour >= 0.100 (200 of 200).  
  
Correlations and times found:  
0.6081 (35), 0.5682 (16), 0.5597 (18), 0.5595 (9), 0.5593 (4), 0.5472 (12),
0.5412 (10), 0.5395 (5), 0.539 (2), 0.5389 (6), 0.5384 (16), 0.5366 (4),
0.5335 (2), 0.5299 (5), 0.5268 (2), 0.5231 (3), 0.5227 (1), 0.5197 (2), 0.5149
(1), 0.5142 (1), 0.5136 (7), 0.5125 (1), 0.5121 (1), 0.5025 (2), 0.5024 (2),
0.4986 (3), 0.4984 (1), 0.4971 (4), 0.4957 (1), 0.4914 (2), 0.4897 (2), 0.4884
(1), 0.4825 (3), 0.4657 (1), 0.4538 (1), 0.4538 (1), 0.4535 (1), 0.4466 (1),
0.4313 (1), 0.4309 (1), 0.4257 (1), 0.4189 (1), 0.4119 (1), 0.4102 (1), 0.3959
(1), 0.379 (1), 0.3769 (1), 0.3714 (1), 0.3638 (1)  
  
Best fit found:  
Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6081, correlation about mean = 0.3929, overlap = 81.7  
steps = 296, shift = 26.2, angle = 88.1 degrees  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.55368455 0.82448955 -0.11683522 192.07393883  
0.61628074 -0.50007327 -0.60837881 199.46519740  
-0.56002810 0.26484663 -0.78499988 181.43939336  
Axis 0.87222578 0.44268552 -0.20797046  
Axis point 0.00000000 16.10805354 129.44736902  
Rotation angle (degrees) 149.96208011  
Shift along axis 218.09816304  
  
Found 49 fits.  

> ui tool show "Fit in Map"

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6082, correlation about mean = 0.3944, overlap = 81.77  
steps = 44, shift = 0.186, angle = 1.13 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54094746 0.83252214 -0.11951068 191.85561540  
0.61475831 -0.48835855 -0.61933686 199.40984889  
-0.57397567 0.26155849 -0.77597623 181.24368313  
Axis 0.86799889 0.44781154 -0.21457573  
Axis point 0.00000000 14.44952029 130.39178679  
Rotation angle (degrees) 149.50728210  
Shift along axis 216.93799866  
  
Average map value = 0.2964 for 10778 atoms, 7036 outside contour  

> select subtract #5

Nothing selected  

> fitmap #5 inMap #4

Fit molecule RNAFramework.pdb (#5) to map
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) using 10778 atoms  
average map value = 0.2972, steps = 156  
shifted from previous position = 31  
rotated from previous position = 1.66 degrees  
atoms outside contour = 6999, contour level = 0.26984  
  
Position of RNAFramework.pdb (#5) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.55528491 0.82029785 -0.13700432 192.19235747  
0.60830693 -0.51294174 -0.60568428 199.59357804  
-0.56711670 0.25298664 -0.78382168 180.30416990  
Axis 0.87308557 0.43733275 -0.21554964  
Axis point 0.00000000 17.50346716 129.68755581  
Rotation angle (degrees) 150.54466008  
Shift along axis 216.22468332  
  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6083, correlation about mean = 0.3945, overlap = 81.76  
steps = 64, shift = 1.03, angle = 1.69 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54099542 0.83260494 -0.11871406 191.80567645  
0.61501151 -0.48792970 -0.61942349 199.41978603  
-0.57365913 0.26209473 -0.77602936 181.23179173  
Axis 0.86799757 0.44796716 -0.21425601  
Axis point 0.00000000 14.43163523 130.35017899  
Rotation angle (degrees) 149.48337092  
Shift along axis 216.99037725  
  
Average map value = 0.2965 for 10778 atoms, 7033 outside contour  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6082, correlation about mean = 0.3944, overlap = 81.77  
steps = 44, shift = 0.062, angle = 0.0718 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54103290 0.83240423 -0.11994439 191.86322812  
0.61460597 -0.48869774 -0.61922049 199.41057952  
-0.57405827 0.26130010 -0.77600218 181.24571427  
Axis 0.86803600 0.44767516 -0.21471017  
Axis point 0.00000000 14.48245043 130.40560250  
Rotation angle (degrees) 149.52307662  
Shift along axis 216.90005285  
  
Average map value = 0.2964 for 10778 atoms, 7036 outside contour  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6083, correlation about mean = 0.3945, overlap = 81.76  
steps = 40, shift = 0.0513, angle = 0.0569 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54104633 0.83253643 -0.11896230 191.81602175  
0.61492984 -0.48812831 -0.61934808 199.41935131  
-0.57369866 0.26194252 -0.77605153 181.23423692  
Axis 0.86801981 0.44788878 -0.21432979  
Axis point 0.00000000 14.44903698 130.35828413  
Rotation angle (degrees) 149.49295572  
Shift along axis 216.97390055  
  
Average map value = 0.2964 for 10778 atoms, 7033 outside contour  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6082, correlation about mean = 0.3944, overlap = 81.77  
steps = 44, shift = 0.0547, angle = 0.0597 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54110533 0.83235243 -0.11997718 191.86759612  
0.61459637 -0.48879060 -0.61915674 199.41247673  
-0.57400029 0.26129145 -0.77604798 181.24563664  
Axis 0.86806093 0.44763534 -0.21469239  
Axis point 0.00000000 14.49418119 130.40225076  
Rotation angle (degrees) 149.52681783  
Shift along axis 216.90477586  
  
Average map value = 0.2964 for 10778 atoms, 7035 outside contour  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6082, correlation about mean = 0.3944, overlap = 81.77  
steps = 40, shift = 0.0166, angle = 0.0439 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54086688 0.83259975 -0.11933460 191.85074707  
0.61482051 -0.48817486 -0.61941993 199.40839817  
-0.57398499 0.26165434 -0.77593702 181.24335110  
Axis 0.86796853 0.44788759 -0.21453983  
Axis point 0.00000000 14.42968443 130.38928457  
Rotation angle (degrees) 149.49924841  
Shift along axis 216.94903904  
  
Average map value = 0.2964 for 10778 atoms, 7035 outside contour  

> select #5:63-68

189 atoms, 203 bonds, 6 residues, 1 model selected  

> color sel lime

> select add #5

10778 atoms, 11624 bonds, 336 residues, 1 model selected  

> select subtract #5

Nothing selected  

> select ~sel & ##selected

Nothing selected  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.5684, correlation about mean = 0.3004, overlap = 75.83  
steps = 60, shift = 0.377, angle = 0.262 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
-0.56237354 -0.82479315 -0.05875638 193.12681077  
-0.82186279 0.56536447 -0.07003265 180.31040203  
0.09098118 0.00890520 -0.99581280 187.18058168  
Axis 0.46627144 -0.88447235 0.01730911  
Axis point 139.57692851 0.00000000 100.72345694  
Rotation angle (degrees) 175.14421867  
Shift along axis -66.19012084  
  
Average map value = 0.2775 for 10778 atoms, 7222 outside contour  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.5683, correlation about mean = 0.3003, overlap = 75.82  
steps = 44, shift = 0.0566, angle = 0.0191 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
-0.56239504 -0.82475937 -0.05902411 193.17632161  
-0.82181376 0.56541203 -0.07022379 180.28493965  
0.09129063 0.00901334 -0.99578351 187.18788493  
Axis 0.46624825 -0.88448411 0.01733262  
Axis point 139.57444055 0.00000000 100.75052425  
Rotation angle (degrees) 175.12552123  
Shift along axis -66.14658609  
  
Average map value = 0.2776 for 10778 atoms, 7218 outside contour  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.5605, correlation about mean = 0.3428, overlap = 74.41  
steps = 68, shift = 1.15, angle = 2.28 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
-0.51089319 -0.81995624 0.25818590 186.87620090  
-0.58161945 0.55086344 0.59855516 175.40729663  
-0.63301423 0.15563184 -0.75833484 178.00361529  
Axis -0.43282160 0.87087459 0.23290106  
Axis point 160.98205834 0.00000000 28.26810334  
Rotation angle (degrees) 149.22489434  
Shift along axis 113.33093182  
  
Average map value = 0.2659 for 10778 atoms, 7240 outside contour  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.5404, correlation about mean = 0.246, overlap = 72.18  
steps = 44, shift = 0.788, angle = 0.871 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
-0.16367215 -0.95167012 -0.25987591 189.47019210  
0.94595777 -0.07664353 -0.31510265 194.20893971  
0.27995600 -0.29740516 0.91278411 213.46189027  
Axis 0.00896984 -0.27360988 0.96179893  
Axis point -10.39545472 210.35326594 0.00000000  
Rotation angle (degrees) 99.42554375  
Shift along axis 153.86944923  
  
Average map value = 0.264 for 10778 atoms, 7402 outside contour  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6082, correlation about mean = 0.3944, overlap = 81.77  
steps = 44, shift = 0.186, angle = 1.13 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54094655 0.83252282 -0.11951010 191.85551426  
0.61475845 -0.48835727 -0.61933775 199.40985365  
-0.57397638 0.26155875 -0.77597562 181.24365382  
Axis 0.86799858 0.44781207 -0.21457590  
Axis point 0.00000000 14.44939206 130.39181190  
Rotation angle (degrees) 149.50722625  
Shift along axis 216.93793175  
  
Average map value = 0.2964 for 10778 atoms, 7036 outside contour  

> volume #4 level 0.2812

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6082, correlation about mean = 0.3944, overlap = 81.77  
steps = 40, shift = 0.00622, angle = 0.018 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54084336 0.83262701 -0.11925100 191.84920028  
0.61484964 -0.48810229 -0.61944822 199.40789842  
-0.57397595 0.26170300 -0.77592730 181.24333645  
Axis 0.86795901 0.44791701 -0.21451691  
Axis point 0.00000000 14.42212529 130.38727289  
Rotation angle (degrees) 149.49593068  
Shift along axis 216.95567169  
  
Average map value = 0.2964 for 10778 atoms, 7112 outside contour  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6082, correlation about mean = 0.3944, overlap = 81.77  
steps = 40, shift = 0.00226, angle = 0.0026 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54084187 0.83263435 -0.11920654 191.84710454  
0.61486387 -0.48807421 -0.61945622 199.40825595  
-0.57396211 0.26173204 -0.77592774 181.24283745  
Axis 0.86795755 0.44792758 -0.21450074  
Axis point 0.00000000 14.42023912 130.38532888  
Rotation angle (degrees) 149.49445496  
Shift along axis 216.95887926  
  
Average map value = 0.2964 for 10778 atoms, 7111 outside contour  

> fitmap #5 inMap #4

Fit molecule RNAFramework.pdb (#5) to map
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) using 10778 atoms  
average map value = 0.2972, steps = 44  
shifted from previous position = 1.03  
rotated from previous position = 1.66 degrees  
atoms outside contour = 7100, contour level = 0.28119  
  
Position of RNAFramework.pdb (#5) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.55503935 0.82050465 -0.13676087 192.18118400  
0.60857020 -0.51262887 -0.60568471 199.58442244  
-0.56707463 0.25295024 -0.78386387 180.31005488  
Axis 0.87300948 0.43751771 -0.21548247  
Axis point 0.00000000 17.47305454 129.67731639  
Rotation angle (degrees) 150.54319567  
Shift along axis 216.24406041  
  

> fitmap #5 inMap #4

Fit molecule RNAFramework.pdb (#5) to map
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) using 10778 atoms  
average map value = 0.2972, steps = 40  
shifted from previous position = 0.0663  
rotated from previous position = 0.0448 degrees  
atoms outside contour = 7101, contour level = 0.28119  
  
Position of RNAFramework.pdb (#5) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.55538639 0.82016811 -0.13736926 192.24836510  
0.60810461 -0.51322456 -0.60564788 199.58829818  
-0.56723430 0.25283368 -0.78378594 180.32237241  
Axis 0.87312194 0.43719587 -0.21567999  
Axis point 0.00000000 17.50863922 129.71524978  
Rotation angle (degrees) 150.55314316  
Shift along axis 216.22351685  
  

> fitmap #5 inMap #4

Fit molecule RNAFramework.pdb (#5) to map
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) using 10778 atoms  
average map value = 0.2972, steps = 44  
shifted from previous position = 0.0641  
rotated from previous position = 0.0313 degrees  
atoms outside contour = 7101, contour level = 0.28119  
  
Position of RNAFramework.pdb (#5) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.55526757 0.82033321 -0.13686288 192.18896474  
0.60836762 -0.51284669 -0.60570384 199.59812971  
-0.56706859 0.25306473 -0.78383129 180.29878815  
Axis 0.87307779 0.43737401 -0.21549746  
Axis point 0.00000000 17.49848683 129.67954871  
Rotation angle (degrees) 150.54069216  
Shift along axis 216.24101816  
  

> select #5:77-79

97 atoms, 104 bonds, 3 residues, 1 model selected  

> color sel orange

> select add #5

10778 atoms, 11624 bonds, 336 residues, 1 model selected  

> select subtract #5

Nothing selected  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6083, correlation about mean = 0.3946, overlap = 81.76  
steps = 132, shift = 51.9, angle = 1.65 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54123147 0.83238115 -0.11920660 191.80892238  
0.61484362 -0.48845700 -0.61917454 199.42723301  
-0.57361646 0.26182331 -0.77615253 181.23096506  
Axis 0.86808642 0.44775027 -0.21434942  
Axis point 0.00000000 14.49415804 130.35465560  
Rotation angle (degrees) 149.50675878  
Shift along axis 216.95356521  
  
Average map value = 0.2965 for 10778 atoms, 7118 outside contour  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6083, correlation about mean = 0.3945, overlap = 81.76  
steps = 68, shift = 4.42, angle = 0.0336 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54099701 0.83259592 -0.11877021 191.80722363  
0.61499280 -0.48796452 -0.61941464 199.41980505  
-0.57367770 0.26205862 -0.77602784 181.23217652  
Axis 0.86799928 0.44795388 -0.21427688  
Axis point 0.00000000 14.43447143 130.35260008  
Rotation angle (degrees) 149.48515973  
Shift along axis 216.98553966  
  
Average map value = 0.2965 for 10778 atoms, 7118 outside contour  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6082, correlation about mean = 0.3944, overlap = 81.77  
steps = 44, shift = 0.0629, angle = 0.0723 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54109156 0.83235912 -0.11999295 191.86656155  
0.61458929 -0.48878525 -0.61916800 199.41230046  
-0.57402086 0.26128017 -0.77603657 181.24581546  
Axis 0.86805656 0.44763782 -0.21470489  
Axis point 0.00000000 14.49311690 130.40402967  
Rotation angle (degrees) 149.52664865  
Shift along axis 216.90115157  
  
Average map value = 0.2964 for 10778 atoms, 7110 outside contour  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6082, correlation about mean = 0.3944, overlap = 81.77  
steps = 40, shift = 0.0145, angle = 0.0422 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54088577 0.83258462 -0.11935461 191.85212865  
0.61481326 -0.48820544 -0.61940303 199.40855562  
-0.57397495 0.26164546 -0.77594744 181.24362596  
Axis 0.86797522 0.44787454 -0.21454000  
Axis point 0.00000000 14.43299675 130.38909416  
Rotation angle (degrees) 149.50049618  
Shift along axis 216.94890232  
  
Average map value = 0.2964 for 10778 atoms, 7109 outside contour  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6083, correlation about mean = 0.3945, overlap = 81.76  
steps = 72, shift = 7.31, angle = 0.0387 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54099564 0.83260836 -0.11868923 191.80328525  
0.61502371 -0.48791701 -0.61942138 199.42073078  
-0.57364585 0.26210755 -0.77603485 181.23255279  
Axis 0.86799736 0.44797299 -0.21424469  
Axis point 0.00000000 14.43176583 130.34910977  
Rotation angle (degrees) 149.48295229  
Shift along axis 216.99173272  
  
Average map value = 0.2965 for 10778 atoms, 7118 outside contour  

> select #5:85-99

481 atoms, 518 bonds, 15 residues, 1 model selected  

> color sel white

> select add #5

10778 atoms, 11624 bonds, 336 residues, 1 model selected  

> select subtract #5

Nothing selected  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6083, correlation about mean = 0.3946, overlap = 81.76  
steps = 48, shift = 0.474, angle = 0.00897 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54100249 0.83262592 -0.11853465 191.79844967  
0.61506891 -0.48782957 -0.61944537 199.42138870  
-0.57359092 0.26221449 -0.77603933 181.23050588  
Axis 0.86799605 0.44800389 -0.21418535  
Axis point 0.00000000 14.42546914 130.34190997  
Rotation angle (degrees) 149.47788562  
Shift along axis 217.00493590  
  
Average map value = 0.2965 for 10778 atoms, 7119 outside contour  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6082, correlation about mean = 0.3944, overlap = 81.77  
steps = 40, shift = 0.0618, angle = 0.0624 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54102345 0.83245922 -0.11960500 191.85621399  
0.61472367 -0.48848936 -0.61926809 199.41173720  
-0.57394114 0.26151452 -0.77601659 181.24325630  
Axis 0.86802604 0.44775590 -0.21458203  
Axis point 0.00000000 14.46577627 130.39071599  
Rotation angle (degrees) 149.51265565  
Shift along axis 216.93242467  
  
Average map value = 0.2964 for 10778 atoms, 7109 outside contour  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6082, correlation about mean = 0.3944, overlap = 81.77  
steps = 40, shift = 0.00677, angle = 0.0258 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54084676 0.83262317 -0.11926246 191.84953860  
0.61484542 -0.48811231 -0.61944451 199.40793910  
-0.57397727 0.26169656 -0.77592850 181.24336236  
Axis 0.86796036 0.44791288 -0.21452008  
Axis point 0.00000000 14.42310692 130.38757829  
Rotation angle (degrees) 149.49637227  
Shift along axis 216.95483807  
  
Average map value = 0.2964 for 10778 atoms, 7109 outside contour  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6082, correlation about mean = 0.3944, overlap = 81.77  
steps = 40, shift = 0.00179, angle = 0.00249 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54084542 0.83263015 -0.11921979 191.84786962  
0.61485939 -0.48808558 -0.61945171 199.40817035  
-0.57396357 0.26172419 -0.77592931 181.24301498  
Axis 0.86795901 0.44792301 -0.21450438  
Axis point 0.00000000 14.42117086 130.38574746  
Rotation angle (degrees) 149.49498542  
Shift along axis 216.95817445  
  
Average map value = 0.2964 for 10778 atoms, 7112 outside contour  

> fitmap #5 inMap #4

Fit molecule RNAFramework.pdb (#5) to map
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) using 10778 atoms  
average map value = 0.2972, steps = 48  
shifted from previous position = 3.2  
rotated from previous position = 1.67 degrees  
atoms outside contour = 7101, contour level = 0.28119  
  
Position of RNAFramework.pdb (#5) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.55525119 0.82034899 -0.13683470 192.19117166  
0.60839785 -0.51282267 -0.60569381 199.59747876  
-0.56705219 0.25306225 -0.78384395 180.30062620  
Axis 0.87307296 0.43738993 -0.21548472  
Axis point 0.00000000 17.49570561 129.67839431  
Rotation angle (degrees) 150.54098427  
Shift along axis 216.24681130  
  

> fitmap #5 inMap #4

Fit molecule RNAFramework.pdb (#5) to map
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) using 10778 atoms  
average map value = 0.2972, steps = 36  
shifted from previous position = 0.0527  
rotated from previous position = 0.0259 degrees  
atoms outside contour = 7102, contour level = 0.28119  
  
Position of RNAFramework.pdb (#5) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.55532188 0.82022949 -0.13726355 192.23886153  
0.60818358 -0.51311588 -0.60566067 199.58736536  
-0.56721279 0.25285516 -0.78379458 180.32146015  
Axis 0.87310090 0.43725352 -0.21564829  
Axis point 0.00000000 17.50072967 129.70992213  
Rotation angle (degrees) 150.55107240  
Shift along axis 216.22818489  
  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6082, correlation about mean = 0.3944, overlap = 81.77  
steps = 48, shift = 1.02, angle = 1.66 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54099961 0.83245657 -0.11973122 191.86136635  
0.61467700 -0.48853802 -0.61927604 199.41065427  
-0.57401361 0.26143205 -0.77599078 181.24345343  
Axis 0.86802045 0.44773791 -0.21464220  
Axis point 0.00000000 14.46689987 130.39816036  
Rotation angle (degrees) 149.51529223  
Shift along axis 216.92080372  
  
Average map value = 0.2964 for 10778 atoms, 7110 outside contour  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6082, correlation about mean = 0.3944, overlap = 81.77  
steps = 40, shift = 0.00973, angle = 0.0307 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54087348 0.83260798 -0.11924728 191.85193381  
0.61485079 -0.48813034 -0.61942497 199.40788416  
-0.57394634 0.26171123 -0.77594643 181.24412686  
Axis 0.86796898 0.44790428 -0.21450315  
Axis point 0.00000000 14.42519211 130.38564208  
Rotation angle (degrees) 149.49689370  
Shift along axis 216.95973680  
  
Average map value = 0.2964 for 10778 atoms, 7109 outside contour  

> ui mousemode right "translate selected models"

> select add #5

10778 atoms, 11624 bonds, 336 residues, 1 model selected  

> view matrix models
> #5,0.22993,-0.044138,0.9722,187.89,0.80333,-0.55528,-0.21521,189.85,0.54935,0.83049,-0.092221,160.32

> fitmap #5 inMap #4

Fit molecule RNAFramework.pdb (#5) to map
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) using 10778 atoms  
average map value = 0.2972, steps = 56  
shifted from previous position = 3.49  
rotated from previous position = 1.7 degrees  
atoms outside contour = 7101, contour level = 0.28119  
  
Position of RNAFramework.pdb (#5) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.55540555 0.82013447 -0.13749255 192.25241663  
0.60803015 -0.51330197 -0.60565704 199.58586284  
-0.56729535 0.25278565 -0.78375725 180.32511278  
Axis 0.87312888 0.43715585 -0.21573300  
Axis point 0.00000000 17.51188320 129.72355337  
Rotation angle (degrees) 150.55486513  
Shift along axis 216.20918756  
  

> fitmap #5 inMap #4

Fit molecule RNAFramework.pdb (#5) to map
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) using 10778 atoms  
average map value = 0.2104, steps = 216  
shifted from previous position = 13  
rotated from previous position = 35.2 degrees  
atoms outside contour = 8308, contour level = 0.28119  
  
Position of RNAFramework.pdb (#5) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.78737904 0.39003429 -0.47739666 196.93981582  
0.12407595 -0.85882283 -0.49701966 189.00051463  
-0.60385380 0.33210939 -0.72461297 220.45219657  
Axis 0.94232583 0.14372169 -0.30226828  
Axis point 0.00000000 46.93759140 162.47402637  
Rotation angle (degrees) 153.90010315  
Shift along axis 146.10924251  
  

> fitmap #5 inMap #4

Fit molecule RNAFramework.pdb (#5) to map
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) using 10778 atoms  
average map value = 0.2104, steps = 36  
shifted from previous position = 0.0294  
rotated from previous position = 0.2 degrees  
atoms outside contour = 8312, contour level = 0.28119  
  
Position of RNAFramework.pdb (#5) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.78772803 0.38714958 -0.47916576 196.93391207  
0.12186099 -0.86039826 -0.49483813 188.96790474  
-0.60384970 0.33140623 -0.72493826 220.45395526  
Axis 0.94244763 0.14221953 -0.30259887  
Axis point 0.00000000 47.22208192 162.44766850  
Rotation angle (degrees) 154.00133103  
Shift along axis 145.76570748  
  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.477, correlation about mean = 0.2347, overlap = 52.98  
steps = 56, shift = 4.78, angle = 3.76 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.79938045 0.36171954 -0.47973945 196.70162229  
0.13808676 -0.88770016 -0.43922718 188.88431905  
-0.58474178 0.28486394 -0.75955883 225.36203808  
Axis 0.94642727 0.13724387 -0.29230045  
Axis point 0.00000000 52.01797343 160.78938897  
Rotation angle (degrees) 157.50894276  
Shift along axis 146.21356859  
  
Average map value = 0.1997 for 10778 atoms, 8347 outside contour  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6082, correlation about mean = 0.3944, overlap = 81.77  
steps = 44, shift = 0.186, angle = 1.13 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54094682 0.83252257 -0.11951047 191.85557728  
0.61475838 -0.48835783 -0.61933736 199.40983424  
-0.57397615 0.26155853 -0.77597583 181.24365590  
Axis 0.86799869 0.44781185 -0.21457590  
Axis point 0.00000000 14.44943411 130.39180246  
Rotation angle (degrees) 149.50725416  
Shift along axis 216.93795632  
  
Average map value = 0.2964 for 10778 atoms, 7109 outside contour  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6082, correlation about mean = 0.3944, overlap = 81.77  
steps = 40, shift = 0.00634, angle = 0.0182 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54084288 0.83262758 -0.11924906 191.84912828  
0.61485013 -0.48810064 -0.61944902 199.40790391  
-0.57397583 0.26170430 -0.77592692 181.24330054  
Axis 0.86795881 0.44791763 -0.21451642  
Axis point 0.00000000 14.42196792 130.38722077  
Rotation angle (degrees) 149.49584275  
Shift along axis 216.95579380  
  
Average map value = 0.2964 for 10778 atoms, 7112 outside contour  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6082, correlation about mean = 0.3944, overlap = 81.77  
steps = 40, shift = 0.00203, angle = 0.0023 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54084264 0.83263339 -0.11920958 191.84725275  
0.61486284 -0.48807683 -0.61945517 199.40826084  
-0.57396244 0.26173024 -0.77592808 181.24289006  
Axis 0.86795789 0.44792654 -0.21450158  
Axis point 0.00000000 14.42047144 130.38543274  
Rotation angle (degrees) 149.49457785  
Shift along axis 216.95870083  
  
Average map value = 0.2964 for 10778 atoms, 7111 outside contour  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6082, correlation about mean = 0.3944, overlap = 81.77  
steps = 40, shift = 0.000358, angle = 0.00117 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54084496 0.83263478 -0.11918929 191.84695318  
0.61486954 -0.48806712 -0.61945617 199.40828950  
-0.57395308 0.26174390 -0.77593040 181.24286248  
Axis 0.86795823 0.44793003 -0.21449288  
Axis point 0.00000000 14.41976627 130.38444462  
Rotation angle (degrees) 149.49402927  
Shift along axis 216.96080068  
  
Average map value = 0.2964 for 10778 atoms, 7111 outside contour  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6082, correlation about mean = 0.3944, overlap = 81.77  
steps = 40, shift = 0.000259, angle = 0.000663 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54084141 0.83263556 -0.11920001 191.84667913  
0.61486597 -0.48806989 -0.61945753 199.40832108  
-0.57396025 0.26173626 -0.77592766 181.24273156  
Axis 0.86795727 0.44792923 -0.21449845  
Axis point 0.00000000 14.41997907 130.38503433  
Rotation angle (degrees) 149.49423220  
Shift along axis 216.95925097  
  
Average map value = 0.2964 for 10778 atoms, 7111 outside contour  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6082, correlation about mean = 0.3944, overlap = 81.77  
steps = 40, shift = 0.00353, angle = 0.00325 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54087932 0.83260992 -0.11920710 191.85036867  
0.61486297 -0.48811193 -0.61942738 199.40820990  
-0.57392773 0.26173944 -0.77595065 181.24371919  
Axis 0.86797004 0.44791052 -0.21448586  
Axis point 0.00000000 14.42431742 130.38350612  
Rotation angle (degrees) 149.49576238  
Shift along axis 216.96319128  
  
Average map value = 0.2964 for 10778 atoms, 7110 outside contour  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6082, correlation about mean = 0.3944, overlap = 81.77  
steps = 40, shift = 0.00096, angle = 0.00315 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54084389 0.83262923 -0.11923295 191.84912932  
0.61485566 -0.48809220 -0.61945019 199.40789190  
-0.57396896 0.26171481 -0.77592846 181.24339144  
Axis 0.86795883 0.44792080 -0.21450976  
Axis point 0.00000000 14.42121484 130.38653895  
Rotation angle (degrees) 149.49539581  
Shift along axis 216.95761036  
  
Average map value = 0.2964 for 10778 atoms, 7111 outside contour  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6082, correlation about mean = 0.3944, overlap = 81.77  
steps = 40, shift = 0.00111, angle = 0.000549 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54084632 0.83262898 -0.11922370 191.84813175  
0.61485822 -0.48808892 -0.61945023 199.40813743  
-0.57396393 0.26172171 -0.77592985 181.24307166  
Axis 0.86795941 0.44792173 -0.21450545  
Axis point 0.00000000 14.42143490 130.38586551  
Rotation angle (degrees) 149.49515287  
Shift along axis 216.95800301  
  
Average map value = 0.2964 for 10778 atoms, 7112 outside contour  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6082, correlation about mean = 0.3944, overlap = 81.77  
steps = 40, shift = 0.000943, angle = 0.000889 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54084333 0.83263295 -0.11920953 191.84722489  
0.61486276 -0.48807745 -0.61945477 199.40825512  
-0.57396188 0.26173048 -0.77592841 181.24286137  
Axis 0.86795811 0.44792623 -0.21450132  
Axis point 0.00000000 14.42056209 130.38537745  
Rotation angle (degrees) 149.49459234  
Shift along axis 216.95870828  
  
Average map value = 0.2964 for 10778 atoms, 7111 outside contour  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6082, correlation about mean = 0.3944, overlap = 81.77  
steps = 40, shift = 0.000912, angle = 0.00146 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54085711 0.83262648 -0.11919217 191.84823056  
0.61486840 -0.48808097 -0.61944639 199.40825573  
-0.57394284 0.26174450 -0.77593777 181.24318618  
Axis 0.86796234 0.44792390 -0.21448906  
Axis point 0.00000000 14.42116625 130.38398585  
Rotation angle (degrees) 149.49454104  
Shift along axis 216.96208106  
  
Average map value = 0.2964 for 10778 atoms, 7112 outside contour  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6082, correlation about mean = 0.3944, overlap = 81.77  
steps = 40, shift = 0.00127, angle = 0.00311 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54085172 0.83262227 -0.11924603 191.84932821  
0.61485090 -0.48810764 -0.61944274 199.40803090  
-0.57396667 0.26170816 -0.77593240 181.24334307  
Axis 0.86796169 0.44791431 -0.21451173  
Axis point 0.00000000 14.42300300 130.38656906  
Rotation angle (degrees) 149.49604753  
Shift along axis 216.95675399  
  
Average map value = 0.2964 for 10778 atoms, 7111 outside contour  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6082, correlation about mean = 0.3944, overlap = 81.77  
steps = 40, shift = 0.00141, angle = 0.00163 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54084527 0.83263009 -0.11922068 191.84795393  
0.61485919 -0.48808606 -0.61945152 199.40815399  
-0.57396387 0.26172351 -0.77592929 181.24303210  
Axis 0.86795900 0.44792287 -0.21450473  
Axis point 0.00000000 14.42118199 130.38579198  
Rotation angle (degrees) 149.49501846  
Shift along axis 216.95814257  
  
Average map value = 0.2964 for 10778 atoms, 7112 outside contour  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6082, correlation about mean = 0.3944, overlap = 81.77  
steps = 40, shift = 0.00105, angle = 0.00102 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54084143 0.83263490 -0.11920454 191.84694273  
0.61486455 -0.48807264 -0.61945677 199.40827726  
-0.57396175 0.26173324 -0.77592757 181.24279610  
Axis 0.86795738 0.44792822 -0.21450014  
Axis point 0.00000000 14.42013725 130.38524700  
Rotation angle (degrees) 149.49438117  
Shift along axis 216.95895819  
  
Average map value = 0.2964 for 10778 atoms, 7111 outside contour  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6082, correlation about mean = 0.3944, overlap = 81.77  
steps = 40, shift = 0.000382, angle = 0.00104 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54084884 0.83263229 -0.11918908 191.84737096  
0.61486964 -0.48807091 -0.61945308 199.40827476  
-0.57394931 0.26174475 -0.77593290 181.24298994  
Axis 0.86795952 0.44792833 -0.21449119  
Axis point 0.00000000 14.42015239 130.38425616  
Rotation angle (degrees) 149.49416555  
Shift along axis 216.96134499  
  
Average map value = 0.2964 for 10778 atoms, 7111 outside contour  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6082, correlation about mean = 0.3944, overlap = 81.77  
steps = 40, shift = 0.000518, angle = 0.00181 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54084675 0.83262917 -0.11922039 191.84781297  
0.61485919 -0.48808734 -0.61945051 199.40823649  
-0.57396248 0.26172405 -0.77593014 181.24299163  
Axis 0.86795948 0.44792226 -0.21450406  
Axis point 0.00000000 14.42144856 130.38567009  
Rotation angle (degrees) 149.49505484  
Shift along axis 216.95815883  
  
Average map value = 0.2964 for 10778 atoms, 7112 outside contour  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6082, correlation about mean = 0.3944, overlap = 81.77  
steps = 40, shift = 0.0011, angle = 0.00134 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54084110 0.83263583 -0.11919956 191.84673964  
0.61486616 -0.48806934 -0.61945778 199.40831346  
-0.57396034 0.26173646 -0.77592754 181.24274739  
Axis 0.86795716 0.44792947 -0.21449838  
Axis point 0.00000000 14.41989291 130.38504366  
Rotation angle (degrees) 149.49421119  
Shift along axis 216.95933604  
  
Average map value = 0.2964 for 10778 atoms, 7111 outside contour  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6082, correlation about mean = 0.3944, overlap = 81.77  
steps = 40, shift = 0.000632, angle = 0.000877 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54084974 0.83263162 -0.11918968 191.84741982  
0.61486930 -0.48807212 -0.61945247 199.40829615  
-0.57394882 0.26174464 -0.77593329 181.24298162  
Axis 0.86795983 0.44792778 -0.21449111  
Axis point 0.00000000 14.42029338 130.38423480  
Rotation angle (degrees) 149.49420480  
Shift along axis 216.96136115  
  
Average map value = 0.2964 for 10778 atoms, 7111 outside contour  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6082, correlation about mean = 0.3944, overlap = 81.77  
steps = 40, shift = 0.000871, angle = 0.00205 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54084772 0.83262786 -0.11922515 191.84819051  
0.61485765 -0.48809115 -0.61944904 199.40817568  
-0.57396321 0.26172111 -0.77593058 181.24309888  
Axis 0.86795990 0.44792077 -0.21450546  
Axis point 0.00000000 14.42169807 130.38585849  
Rotation angle (degrees) 149.49524065  
Shift along axis 216.95796520  
  
Average map value = 0.2964 for 10778 atoms, 7112 outside contour  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6082, correlation about mean = 0.3944, overlap = 81.77  
steps = 40, shift = 0.00108, angle = 0.00113 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54084262 0.83263367 -0.11920773 191.84713235  
0.61486363 -0.48807579 -0.61945521 199.40827394  
-0.57396162 0.26173129 -0.77592833 181.24286239  
Axis 0.86795785 0.44792698 -0.21450081  
Axis point 0.00000000 14.42042919 130.38532229  
Rotation angle (degrees) 149.49453435  
Shift along axis 216.95882934  
  
Average map value = 0.2964 for 10778 atoms, 7111 outside contour  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6082, correlation about mean = 0.3944, overlap = 81.77  
steps = 40, shift = 0.00104, angle = 0.00144 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54085759 0.83262611 -0.11919261 191.84827535  
0.61486815 -0.48808166 -0.61944610 199.40823386  
-0.57394267 0.26174440 -0.77593793 181.24319170  
Axis 0.86796250 0.44792358 -0.21448909  
Axis point 0.00000000 14.42122011 130.38398575  
Rotation angle (degrees) 149.49456213  
Shift along axis 216.96207150  
  
Average map value = 0.2964 for 10778 atoms, 7112 outside contour  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6082, correlation about mean = 0.3944, overlap = 81.77  
steps = 40, shift = 0.0011, angle = 0.00297 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54085065 0.83262329 -0.11924381 191.84919892  
0.61485139 -0.48810512 -0.61944424 199.40805287  
-0.57396716 0.26170961 -0.77593154 181.24331988  
Axis 0.86796127 0.44791526 -0.21451143  
Axis point 0.00000000 14.42275240 130.38656560  
Rotation angle (degrees) 149.49591809  
Shift along axis 216.95682057  
  
Average map value = 0.2964 for 10778 atoms, 7111 outside contour  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6082, correlation about mean = 0.3944, overlap = 81.77  
steps = 40, shift = 0.000932, angle = 0.00113 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54084702 0.83262824 -0.11922564 191.84829541  
0.61485747 -0.48809073 -0.61944954 199.40810953  
-0.57396406 0.26172068 -0.77593011 181.24312513  
Axis 0.86795968 0.44792097 -0.21450594  
Axis point 0.00000000 14.42156047 130.38593918  
Rotation angle (degrees) 149.49522935  
Shift along axis 216.95793149  
  
Average map value = 0.2964 for 10778 atoms, 7112 outside contour  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6082, correlation about mean = 0.3944, overlap = 81.77  
steps = 40, shift = 0.00131, angle = 0.00127 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54084199 0.83263436 -0.11920579 191.84703448  
0.61486422 -0.48807398 -0.61945605 199.40827817  
-0.57396158 0.26173247 -0.77592796 181.24282532  
Axis 0.86795759 0.44792769 -0.21450035  
Axis point 0.00000000 14.42026347 130.38526978  
Rotation angle (degrees) 149.49444702  
Shift along axis 216.95893120  
  
Average map value = 0.2964 for 10778 atoms, 7111 outside contour  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6082, correlation about mean = 0.3944, overlap = 81.77  
steps = 40, shift = 0.000974, angle = 0.00135 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54085567 0.83262751 -0.11919148 191.84809711  
0.61486874 -0.48807916 -0.61944748 199.40825011  
-0.57394384 0.26174458 -0.77593700 181.24314542  
Axis 0.86796185 0.44792471 -0.21448934  
Axis point 0.00000000 14.42098128 130.38401539  
Rotation angle (degrees) 149.49447715  
Shift along axis 216.96198924  
  
Average map value = 0.2964 for 10778 atoms, 7112 outside contour  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6082, correlation about mean = 0.3944, overlap = 81.77  
steps = 40, shift = 0.0013, angle = 0.00306 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54085119 0.83262285 -0.11924443 191.84923567  
0.61485114 -0.48810601 -0.61944379 199.40803921  
-0.57396692 0.26170935 -0.77593181 181.24331198  
Axis 0.86796146 0.44791488 -0.21451146  
Axis point 0.00000000 14.42284082 130.38655411  
Rotation angle (degrees) 149.49595276  
Shift along axis 216.95680208  
  
Average map value = 0.2964 for 10778 atoms, 7111 outside contour  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6082, correlation about mean = 0.3944, overlap = 81.77  
steps = 40, shift = 0.00095, angle = 0.00116 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54084697 0.83262823 -0.11922599 191.84830663  
0.61485736 -0.48809090 -0.61944952 199.40810479  
-0.57396423 0.26172043 -0.77593007 181.24313648  
Axis 0.86795967 0.44792091 -0.21450610  
Axis point 0.00000000 14.42156660 130.38596192  
Rotation angle (degrees) 149.49523914  
Shift along axis 216.95789594  
  
Average map value = 0.2964 for 10778 atoms, 7112 outside contour  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6082, correlation about mean = 0.3944, overlap = 81.77  
steps = 40, shift = 0.00131, angle = 0.00126 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54084230 0.83263411 -0.11920613 191.84704842  
0.61486395 -0.48807442 -0.61945597 199.40828242  
-0.57396158 0.26173245 -0.77592797 181.24282479  
Axis 0.86795769 0.44792746 -0.21450042  
Axis point 0.00000000 14.42030549 130.38528050  
Rotation angle (degrees) 149.49445488  
Shift along axis 216.95890582  
  
Average map value = 0.2964 for 10778 atoms, 7111 outside contour  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6082, correlation about mean = 0.3944, overlap = 81.77  
steps = 40, shift = 0.000874, angle = 0.0013 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54085492 0.83262807 -0.11919102 191.84800197  
0.61486873 -0.48807805 -0.61944836 199.40824673  
-0.57394456 0.26174488 -0.77593636 181.24313058  
Axis 0.86796158 0.44792514 -0.21448955  
Axis point 0.00000000 14.42085949 130.38405343  
Rotation angle (degrees) 149.49442111  
Shift along axis 216.96190381  
  
Average map value = 0.2964 for 10778 atoms, 7112 outside contour  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6082, correlation about mean = 0.3944, overlap = 81.77  
steps = 40, shift = 0.0012, angle = 0.00283 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54085050 0.83262391 -0.11924012 191.84904806  
0.61485274 -0.48810284 -0.61944470 199.40805519  
-0.57396585 0.26171187 -0.77593175 181.24328624  
Axis 0.86796115 0.44791617 -0.21451002  
Axis point 0.00000000 14.42259036 130.38638896  
Rotation angle (degrees) 149.49580949  
Shift along axis 216.95711099  
  
Average map value = 0.2964 for 10778 atoms, 7111 outside contour  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6082, correlation about mean = 0.3944, overlap = 81.77  
steps = 40, shift = 0.00111, angle = 0.00124 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54084553 0.83262990 -0.11922085 191.84796995  
0.61485890 -0.48808633 -0.61945160 199.40815977  
-0.57396393 0.26172364 -0.77592920 181.24303327  
Axis 0.86795907 0.44792269 -0.21450479  
Axis point 0.00000000 14.42120062 130.38580813  
Rotation angle (degrees) 149.49501350  
Shift along axis 216.95812759  
  
Average map value = 0.2964 for 10778 atoms, 7112 outside contour  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6082, correlation about mean = 0.3944, overlap = 81.77  
steps = 40, shift = 0.000908, angle = 0.000858 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54084247 0.83263384 -0.11920723 191.84709129  
0.61486339 -0.48807515 -0.61945594 199.40826356  
-0.57396201 0.26173193 -0.77592782 181.24284079  
Axis 0.86795776 0.44792712 -0.21450085  
Axis point 0.00000000 14.42034490 130.38534174  
Rotation angle (degrees) 149.49447852  
Shift along axis 216.95879781  
  
Average map value = 0.2964 for 10778 atoms, 7111 outside contour  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6082, correlation about mean = 0.3944, overlap = 81.77  
steps = 40, shift = 0.000109, angle = 0.00111 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54084742 0.83263324 -0.11918889 191.84723048  
0.61486975 -0.48806940 -0.61945417 199.40829519  
-0.57395054 0.26174456 -0.77593205 181.24295048  
Axis 0.86795905 0.44792902 -0.21449168  
Axis point 0.00000000 14.42000542 130.38431491  
Rotation angle (degrees) 149.49411242  
Shift along axis 216.96119685  
  
Average map value = 0.2964 for 10778 atoms, 7111 outside contour  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6082, correlation about mean = 0.3944, overlap = 81.77  
steps = 40, shift = 0.0004, angle = 0.0016 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54084525 0.83263069 -0.11921662 191.84755744  
0.61486048 -0.48808361 -0.61945217 199.40823061  
-0.57396252 0.26172618 -0.77592939 181.24292934  
Axis 0.86795890 0.44792379 -0.21450322  
Axis point 0.00000000 14.42111333 130.38557121  
Rotation angle (degrees) 149.49488709  
Shift along axis 216.95829336  
  
Average map value = 0.2964 for 10778 atoms, 7112 outside contour  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6082, correlation about mean = 0.3944, overlap = 81.77  
steps = 40, shift = 0.000922, angle = 0.00155 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54084155 0.83263675 -0.11919102 191.84667045  
0.61486908 -0.48806477 -0.61945848 199.40829814  
-0.57395678 0.26174202 -0.77592829 181.24278280  
Axis 0.86795714 0.44793119 -0.21449489  
Axis point 0.00000000 14.41949856 130.38467662  
Rotation angle (degrees) 149.49397040  
Shift along axis 216.96023270  
  
Average map value = 0.2964 for 10778 atoms, 7111 outside contour  

> fitmap #5 inMap #4 resolution 17 metric correlation

Fit map RNAFramework.pdb map 17 in map
cryosparc_P12_J2806_class_07_00122_volume.mrc using 1791 points  
correlation = 0.6082, correlation about mean = 0.3944, overlap = 81.77  
steps = 40, shift = 0.000561, angle = 0.000553 degrees  
  
Position of RNAFramework.pdb map 17 (#6) relative to
cryosparc_P12_J2806_class_07_00122_volume.mrc (#4) coordinates:  
Matrix rotation and translation  
0.54084837 0.83263251 -0.11918975 191.84727275  
0.61486911 -0.48807069 -0.61945378 199.40827772  
-0.57395033 0.26174449 -0.77593223 181.24291406  
Axis 0.86795936 0.44792837 -0.21449177  
Axis point 0.00000000 14.42012968 130.38430405  
Rotation angle (degrees) 149.49414240  
Shift along axis 216.96114727  
  
Average map value = 0.2964 for 10778 atoms, 7111 outside contour  

> close #5

> select #5:85-99

Nothing selected  

> close

> open
> /Users/francescappadoo/Downloads/cryosparc_P12_J2809_class_09_00122_volume.mrc

Opened cryosparc_P12_J2809_class_09_00122_volume.mrc as #1, grid size
128,128,128, pixel 2.96, shown at level 0.0565, step 1, values float32  

> open
> /Users/francescappadoo/Downloads/cryosparc_P12_J2809_class_08_00122_volume.mrc

Opened cryosparc_P12_J2809_class_08_00122_volume.mrc as #2, grid size
128,128,128, pixel 2.96, shown at level 0.0538, step 1, values float32  

> open
> /Users/francescappadoo/Downloads/cryosparc_P12_J2809_class_07_00122_volume.mrc

Opened cryosparc_P12_J2809_class_07_00122_volume.mrc as #3, grid size
128,128,128, pixel 2.96, shown at level 0.0478, step 1, values float32  

> open
> /Users/francescappadoo/Downloads/cryosparc_P12_J2809_class_06_00122_volume.mrc

Opened cryosparc_P12_J2809_class_06_00122_volume.mrc as #4, grid size
128,128,128, pixel 2.96, shown at level 0.0482, step 1, values float32  

> open
> /Users/francescappadoo/Downloads/cryosparc_P12_J2809_class_05_00122_volume.mrc

Opened cryosparc_P12_J2809_class_05_00122_volume.mrc as #5, grid size
128,128,128, pixel 2.96, shown at level 0.0828, step 1, values float32  

> open
> /Users/francescappadoo/Downloads/cryosparc_P12_J2809_class_04_00122_volume.mrc

Opened cryosparc_P12_J2809_class_04_00122_volume.mrc as #6, grid size
128,128,128, pixel 2.96, shown at level 0.0787, step 1, values float32  

> open
> /Users/francescappadoo/Downloads/cryosparc_P12_J2809_class_03_00122_volume.mrc

Opened cryosparc_P12_J2809_class_03_00122_volume.mrc as #7, grid size
128,128,128, pixel 2.96, shown at level 0.0597, step 1, values float32  

> open
> /Users/francescappadoo/Downloads/cryosparc_P12_J2809_class_02_00122_volume.mrc

Opened cryosparc_P12_J2809_class_02_00122_volume.mrc as #8, grid size
128,128,128, pixel 2.96, shown at level 0.0642, step 1, values float32  

> select #5:85-99

Nothing selected  

> tile

8 models tiled  

> surface dust #1 size 29.6

> surface dust #2 size 29.6

> surface dust #3 size 29.6

> surface dust #4 size 29.6

> surface dust #5 size 29.6

> surface dust #6 size 29.6

> surface dust #7 size 29.6

> surface dust #8 size 29.6

> volume #1 level 0.2191

> tile

8 models tiled  

> volume #2 level 0.219

> volume #3 level 0.219

> volume #4 level 0.219

> volume #5 level 0.219

> volume #6 level 0.219

> volume #7 level 0.219

> volume #8 level 0.219

> tile

8 models tiled  

> tile

8 models tiled  

> volume #8 level 0.45

> volume #8 level 0.7

> volume #8 level 0.6

> volume #7 level 0.6

> volume #6 level 0.6

> volume #5 level 0.6

> volume #3 level 0.1

> volume #3 level 0.2

> volume #3 level 0.15

> close

> open
> /Users/francescappadoo/Downloads/cryosparc_P12_J2810_class_02_00102_volume.mrc

Opened cryosparc_P12_J2810_class_02_00102_volume.mrc as #1, grid size
128,128,128, pixel 2.96, shown at level 0.0627, step 1, values float32  

> open
> /Users/francescappadoo/Downloads/cryosparc_P12_J2810_class_03_00102_volume.mrc

Opened cryosparc_P12_J2810_class_03_00102_volume.mrc as #2, grid size
128,128,128, pixel 2.96, shown at level 0.082, step 1, values float32  

> open
> /Users/francescappadoo/Downloads/cryosparc_P12_J2810_class_04_00102_volume.mrc

Opened cryosparc_P12_J2810_class_04_00102_volume.mrc as #3, grid size
128,128,128, pixel 2.96, shown at level 0.0488, step 1, values float32  

> open
> /Users/francescappadoo/Downloads/cryosparc_P12_J2810_class_05_00102_volume.mrc

Opened cryosparc_P12_J2810_class_05_00102_volume.mrc as #4, grid size
128,128,128, pixel 2.96, shown at level 0.0483, step 1, values float32  

> open
> /Users/francescappadoo/Downloads/cryosparc_P12_J2810_class_06_00102_volume.mrc

Opened cryosparc_P12_J2810_class_06_00102_volume.mrc as #5, grid size
128,128,128, pixel 2.96, shown at level 0.0568, step 1, values float32  

> open
> /Users/francescappadoo/Downloads/cryosparc_P12_J2810_class_07_00102_volume.mrc

Opened cryosparc_P12_J2810_class_07_00102_volume.mrc as #6, grid size
128,128,128, pixel 2.96, shown at level 0.0591, step 1, values float32  

> open
> /Users/francescappadoo/Downloads/cryosparc_P12_J2810_class_08_00102_volume.mrc

Opened cryosparc_P12_J2810_class_08_00102_volume.mrc as #7, grid size
128,128,128, pixel 2.96, shown at level 0.061, step 1, values float32  

> open
> /Users/francescappadoo/Downloads/cryosparc_P12_J2810_class_09_00102_volume.mrc

Opened cryosparc_P12_J2810_class_09_00102_volume.mrc as #8, grid size
128,128,128, pixel 2.96, shown at level 0.0622, step 1, values float32  

> tile

8 models tiled  

> surface dust #1 size 29.6

> surface dust #2 size 29.6

> surface dust #3 size 29.6

> surface dust #4 size 29.6

> surface dust #5 size 29.6

> surface dust #6 size 29.6

> surface dust #7 size 29.6

> surface dust #8 size 29.6

> volume #1 level 0.2

> volume #2 level 0.2

> volume #3 level 0.2

> volume #4 level 0.2

> volume #5 level 0.2

> volume #6 level 0.2

> volume #7 level 0.2

> volume #8 level 0.2

> tile

8 models tiled  

> volume #7 level 0.3301

> volume #8 level 0.233

> tile

8 models tiled  

> volume #6 level 0.4064

> volume #5 level 0.4297

> volume #6 level 0.4499

> volume #4 level 0.2

> volume #3 level 0.2328

> volume #2 level 0.3833

> close #1-2

> volume #4 level 0.233

> hide #!3 models

> hide #!4 models

> tile

4 models tiled  

> tile

4 models tiled  

> volume #5 level 0.45

> hide #!5 models

> hide #!6 models

> tile

2 models tiled  

> close #4

> tile

2 models tiled  

> close

> open /Users/francescappadoo/Downloads/cryosparc_P12_J2812_005_volume_map.mrc

Opened cryosparc_P12_J2812_005_volume_map.mrc as #1, grid size 128,128,128,
pixel 2.96, shown at level 0.0331, step 1, values float32  

> open /Users/francescappadoo/Downloads/cryosparc_P12_J2813_005_volume_map.mrc

Opened cryosparc_P12_J2813_005_volume_map.mrc as #2, grid size 128,128,128,
pixel 2.96, shown at level 0.0431, step 1, values float32  

> open /Users/francescappadoo/Downloads/cryosparc_P12_J2814_005_volume_map.mrc

Opened cryosparc_P12_J2814_005_volume_map.mrc as #3, grid size 128,128,128,
pixel 2.96, shown at level 0.0502, step 1, values float32  

> tile

3 models tiled  

> surface dust #1 size 29.6

> surface dust #2 size 29.6

> surface dust #3 size 29.6

> volume #1 level 0.3611

> volume #2 level 0.2577

> volume #1 level 0.258

> volume #3 level 0.258

> tile

3 models tiled  

> volume #2 level 0.4353

> tile

3 models tiled  

> volume #3 level 0.2938

> tile

3 models tiled  

> tile

3 models tiled  

> volume #2 level 0.3687

> volume #2 level 0.3872

> close #1

> tile

2 models tiled  

> tile

2 models tiled  

> tile

2 models tiled  

> tile

2 models tiled  

> fitmap #2 inMap #3

Fit map cryosparc_P12_J2813_005_volume_map.mrc in map
cryosparc_P12_J2814_005_volume_map.mrc using 2444 points  
correlation = 0.9524, correlation about mean = 0.8198, overlap = 1695  
steps = 576, shift = 107, angle = 0.513 degrees  
  
Position of cryosparc_P12_J2813_005_volume_map.mrc (#2) relative to
cryosparc_P12_J2814_005_volume_map.mrc (#3) coordinates:  
Matrix rotation and translation  
0.99996369 0.00762587 0.00380386 -2.09520822  
-0.00763629 0.99996710 0.00273431 0.64836021  
-0.00378289 -0.00276326 0.99998903 0.94048014  
Axis -0.30698020 0.42363881 -0.85222844  
Axis point 77.28516154 270.43439045 0.00000000  
Rotation angle (degrees) 0.51304843  
Shift along axis 0.11635405  
  

> transparency 50

> fitmap #2 inMap #3

Fit map cryosparc_P12_J2813_005_volume_map.mrc in map
cryosparc_P12_J2814_005_volume_map.mrc using 2444 points  
correlation = 0.9525, correlation about mean = 0.8199, overlap = 1694  
steps = 76, shift = 20.1, angle = 0.0941 degrees  
  
Position of cryosparc_P12_J2813_005_volume_map.mrc (#2) relative to
cryosparc_P12_J2814_005_volume_map.mrc (#3) coordinates:  
Matrix rotation and translation  
0.99995317 0.00803449 0.00539475 -2.39805690  
-0.00804933 0.99996386 0.00273517 0.71122236  
-0.00537258 -0.00277847 0.99998171 1.25325851  
Axis -0.27396650 0.53501665 -0.79918680  
Axis point 84.63403521 297.73889718 0.00000000  
Rotation angle (degrees) 0.57655535  
Shift along axis 0.03591540  
  

> fitmap #2 inMap #3

Fit map cryosparc_P12_J2813_005_volume_map.mrc in map
cryosparc_P12_J2814_005_volume_map.mrc using 2444 points  
correlation = 0.9524, correlation about mean = 0.8198, overlap = 1695  
steps = 88, shift = 19.3, angle = 0.0684 degrees  
  
Position of cryosparc_P12_J2813_005_volume_map.mrc (#2) relative to
cryosparc_P12_J2814_005_volume_map.mrc (#3) coordinates:  
Matrix rotation and translation  
0.99996034 0.00784337 0.00421798 -2.18723497  
-0.00785465 0.99996561 0.00266284 0.69795564  
-0.00419695 -0.00269586 0.99998756 1.00826760  
Axis -0.28810422 0.45241899 -0.84398638  
Axis point 82.18196504 275.79164297 0.00000000  
Rotation angle (degrees) 0.53285412  
Shift along axis 0.09495590  
  

Color zone shortcut requires 1 displayed atomic model and 1 map, got 0 atomic
models, 2 maps.  

> surface dust #2 size 29.6

> surface dust #3 size 29.6

> vop subtract #2 #3 minrms True

Opened volume difference as #1, grid size 128,128,128, pixel 2.96, shown at
step 1, values float32  
Minimum RMS scale factor for "cryosparc_P12_J2814_005_volume_map.mrc #3" above
level 0.29384 is 0.7766  
  

> hide #!1 models

> show #!2 models

> show #!3 models

> select ~sel

6 models selected  

> select up

6 models selected  

> close

> open
> /Users/francescappadoo/Downloads/cryosparc_P12_J2817_class_00_00102_volume.mrc

Opened cryosparc_P12_J2817_class_00_00102_volume.mrc as #1, grid size
128,128,128, pixel 2.96, shown at level 0.0544, step 1, values float32  

> open
> /Users/francescappadoo/Downloads/cryosparc_P12_J2817_class_01_00102_volume.mrc

Opened cryosparc_P12_J2817_class_01_00102_volume.mrc as #2, grid size
128,128,128, pixel 2.96, shown at level 0.0537, step 1, values float32  

> open
> /Users/francescappadoo/Downloads/cryosparc_P12_J2817_class_02_00102_volume.mrc

Opened cryosparc_P12_J2817_class_02_00102_volume.mrc as #3, grid size
128,128,128, pixel 2.96, shown at level 0.0579, step 1, values float32  

> open
> /Users/francescappadoo/Downloads/cryosparc_P12_J2817_class_03_00102_volume.mrc

Opened cryosparc_P12_J2817_class_03_00102_volume.mrc as #4, grid size
128,128,128, pixel 2.96, shown at level 0.0598, step 1, values float32  

> tile

4 models tiled  

> surface dust #1 size 29.6

> surface dust #2 size 29.6

> surface dust #3 size 29.6

> surface dust #4 size 29.6

> volume #1 level 0.3

> volume #2 level 0.3

> volume #3 level 0.3

> volume #4 level 0.3

> tile

4 models tiled  

> tile

4 models tiled  

> volume #3 level 0.2547

> volume #1 level 0.255

> volume #2 level 0.255

> volume #4 level 0.255

> volume #4 level 0.2495

> tile

4 models tiled  

> tile

4 models tiled  

> tile

4 models tiled  

> scalebar 50

> tile

5 models tiled  

> scalebar off

> scalebar 50

> tile

5 models tiled  

> tile

5 models tiled  

> scalebar off

> tile

4 models tiled  

> volume #4 level 0.244

> volume #1 level 0.3702

> volume #2 level 0.3871

> tile

4 models tiled  

> volume #3 level 0.232

> tile

4 models tiled  

> tile

4 models tiled  

> tile

4 models tiled  

> tile

4 models tiled  

> tile

4 models tiled  

> close

> open /Users/francescappadoo/Downloads/cryosparc_P12_J2818_007_volume_map.mrc

Opened cryosparc_P12_J2818_007_volume_map.mrc as #1, grid size 128,128,128,
pixel 2.96, shown at level 0.0455, step 1, values float32  

> tile

1 model tiled  

> surface dust #1 size 29.6

> volume #1 level 0.4017

> tile

1 model tiled  

> tile

1 model tiled  

> tile

1 model tiled  

> open /Users/francescappadoo/Downloads/cryosparc_P12_J2819_007_volume_map.mrc

Opened cryosparc_P12_J2819_007_volume_map.mrc as #2, grid size 128,128,128,
pixel 2.96, shown at level 0.0532, step 1, values float32  

> tile

2 models tiled  

> surface dust #1 size 29.6

> surface dust #2 size 29.6

> volume #2 level 0.4074

> tile

2 models tiled  

> select add #2

2 models selected  

> ui mousemode right "rotate selected models"

> view matrix models
> #2,0.88558,0.46448,0,18.047,-0.46448,0.88558,0,120.62,0,0,1,-16.91

> view matrix models
> #2,-0.17366,0.17138,0.96978,88.013,0.11139,-0.975,0.19225,321.41,0.97849,0.14142,0.15023,-66.249

> select subtract #2

Nothing selected  

> tile

2 models tiled  

> volume #2 level 0.2693

> tile

2 models tiled  

> tile

2 models tiled  

> scalebar 50

> scalebar off

> scalebar 50

> tile

3 models tiled  

> select add #1

2 models selected  

> ui mousemode right "translate selected models"

> view matrix models
> #1,-0.33304,0.010429,0.94285,125.34,-0.18526,-0.98117,-0.054586,431.2,0.92453,-0.19286,0.3287,-30.857

> transparency sel 50

> fitmap #1 inMap #2

Fit map cryosparc_P12_J2818_007_volume_map.mrc in map
cryosparc_P12_J2819_007_volume_map.mrc using 2290 points  
correlation = 0.9421, correlation about mean = 0.7819, overlap = 1664  
steps = 144, shift = 58.8, angle = 19.1 degrees  
  
Position of cryosparc_P12_J2818_007_volume_map.mrc (#1) relative to
cryosparc_P12_J2819_007_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.99996913 0.00415055 0.00667112 -1.99638937  
-0.00415099 0.99999138 0.00005165 0.46837791  
-0.00667085 -0.00007934 0.99997774 1.12894591  
Axis -0.00833547 0.84903075 -0.52827767  
Axis point 153.81424804 0.00000000 300.19753960  
Rotation angle (degrees) 0.45018788  
Shift along axis -0.18208882  
  

> transparency sel 0

> transparency sel 50

> select subtract #1

Nothing selected  

> transparency 0

> transparency 50

> fitmap #1 inMap #2

Fit map cryosparc_P12_J2818_007_volume_map.mrc in map
cryosparc_P12_J2819_007_volume_map.mrc using 2290 points  
correlation = 0.9422, correlation about mean = 0.782, overlap = 1663  
steps = 72, shift = 21.7, angle = 0.0751 degrees  
  
Position of cryosparc_P12_J2818_007_volume_map.mrc (#1) relative to
cryosparc_P12_J2819_007_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.99995835 0.00454896 0.00791196 -2.25248334  
-0.00454833 0.99998965 -0.00009773 0.55963971  
-0.00791232 0.00006174 0.99996869 1.34299381  
Axis 0.00873662 0.86691277 -0.49838330  
Axis point 155.76589802 0.00000000 285.28842643  
Rotation angle (degrees) 0.52293426  
Shift along axis -0.20384597  
  

> vop subtract #1 #2 minrms True

Opened volume difference as #5, grid size 128,128,128, pixel 2.96, shown at
step 1, values float32  
Minimum RMS scale factor for "cryosparc_P12_J2819_007_volume_map.mrc #2" above
level 0.26934 is 0.75554  
  

> close #5

> show #!1 models

> show #!2 models

> tile

3 models tiled  

> fitmap #1 inMap #2

Fit map cryosparc_P12_J2818_007_volume_map.mrc in map
cryosparc_P12_J2819_007_volume_map.mrc using 2290 points  
correlation = 0.9421, correlation about mean = 0.782, overlap = 1664  
steps = 564, shift = 124, angle = 0.05 degrees  
  
Position of cryosparc_P12_J2818_007_volume_map.mrc (#1) relative to
cryosparc_P12_J2819_007_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.99996570 0.00414084 0.00717203 -2.05720799  
-0.00414182 0.99999141 0.00012291 0.44516601  
-0.00717146 -0.00015261 0.99997427 1.24408914  
Axis -0.01663273 0.86586809 -0.49999579  
Axis point 158.33521295 0.00000000 288.06380832  
Rotation angle (degrees) 0.47457076  
Shift along axis -0.20236731  
  

> vop subtract #1 #2 minrms True

Opened volume difference as #3, grid size 128,128,128, pixel 2.96, shown at
step 1, values float32  
Minimum RMS scale factor for "cryosparc_P12_J2819_007_volume_map.mrc #2" above
level 0.26934 is 0.67804  
  

> show #!2 models

> show #!1 models

> tile

4 models tiled  

> tile

4 models tiled  

> close #3

> open /Users/francescappadoo/Downloads/cryosparc_P12_J2821_007_volume_map.mrc

Opened cryosparc_P12_J2821_007_volume_map.mrc as #3, grid size 128,128,128,
pixel 2.96, shown at level 0.00753, step 1, values float32  

> close #1-2

> tile

2 models tiled  

> tile

2 models tiled  

> surface dust #3 size 29.6

> volume #3 level 0.3

> volume #3 level 0.4

> tile

2 models tiled  

> volume #3 level 0.3938

> open /Users/francescappadoo/Downloads/cryosparc_P12_J2822_007_volume_map.mrc

Opened cryosparc_P12_J2822_007_volume_map.mrc as #1, grid size 128,128,128,
pixel 2.96, shown at level 0.0127, step 1, values float32  

> volume #1 level 0.573

> tile

3 models tiled  

> surface dust #3 size 29.6

> surface dust #1 size 29.6

> select add #1

2 models selected  

> view matrix models
> #1,0.97223,-0.21106,-0.10114,380.42,0.22848,0.94958,0.21468,-275.43,0.050733,-0.23183,0.97143,18.353

> ui mousemode right "rotate selected models"

> view matrix models
> #1,-0.051286,0.012031,0.99861,321.51,-0.08411,-0.99643,0.0076852,185.93,0.99514,-0.083599,0.052114,-11.552

> volume #1 level 0.286

> surface dust #1 size 29.6

[Repeated 5 time(s)]

> volume #1 level 0.4

> select subtract #1

Nothing selected  

> tile

3 models tiled  

> close #1

> close

> open /Users/francescappadoo/Downloads/cryosparc_P12_J2821_005_volume_map.mrc

Opened cryosparc_P12_J2821_005_volume_map.mrc as #1, grid size 128,128,128,
pixel 2.96, shown at level 0.0073, step 1, values float32  

> tile

1 model tiled  

> surface dust #1 size 29.6

> volume #1 level 0.3975

> tile

1 model tiled  

> volume #1 level 0.4

> volume #1 level 0.3825

> tile

1 model tiled  

> open /Users/francescappadoo/Downloads/cryosparc_P12_J2822_005_volume_map.mrc

Opened cryosparc_P12_J2822_005_volume_map.mrc as #2, grid size 128,128,128,
pixel 2.96, shown at level 0.0126, step 1, values float32  

> tile

2 models tiled  

> surface dust #1 size 29.6

> surface dust #2 size 29.6

> volume #2 level 0.4943

> tile

2 models tiled  

> select add #2

2 models selected  

> view matrix models
> #2,0.99447,-0.10498,0,136.19,0.10498,0.99447,0,-35.791,0,0,1,0.7

> view matrix models
> #2,0.92683,-0.37547,0,199.54,0.37547,0.92683,0,-74.55,0,0,1,0.7

> view matrix models
> #2,-0.13744,0.20727,0.96858,106.61,-0.077827,-0.9771,0.19804,328.92,0.98745,-0.048162,0.15043,-14.472

> tile

2 models tiled  

> volume #2 level 0.325

> tile

2 models tiled  

> select subtract #2

Nothing selected  

> volume #2 level 0.3576

> volume #2 level 0.383

> fitmap #1 inMap #2

Fit map cryosparc_P12_J2821_005_volume_map.mrc in map
cryosparc_P12_J2822_005_volume_map.mrc using 2499 points  
correlation = 0.9329, correlation about mean = 0.7838, overlap = 1733  
steps = 252, shift = 115, angle = 13.1 degrees  
  
Position of cryosparc_P12_J2821_005_volume_map.mrc (#1) relative to
cryosparc_P12_J2822_005_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.99986367 0.01408905 0.00861070 -4.21776779  
-0.01406473 0.99989695 -0.00287889 3.05898223  
-0.00865037 0.00275739 0.99995879 1.01377657  
Axis 0.16823976 0.51523339 -0.84037488  
Axis point 214.75038890 301.61653129 0.00000000  
Rotation angle (degrees) 0.95979097  
Shift along axis 0.01454116  
  

> vop subtract #1 #2 minrms True

Opened volume difference as #3, grid size 128,128,128, pixel 2.96, shown at
step 1, values float32  
Minimum RMS scale factor for "cryosparc_P12_J2822_005_volume_map.mrc #2" above
level 0.383 is 0.74831  
  

> close #3

> show #!2 models

> show #!1 models

> fitmap #1 inMap #2

Fit map cryosparc_P12_J2821_005_volume_map.mrc in map
cryosparc_P12_J2822_005_volume_map.mrc using 2499 points  
correlation = 0.933, correlation about mean = 0.7838, overlap = 1732  
steps = 56, shift = 5.02, angle = 0.03 degrees  
  
Position of cryosparc_P12_J2821_005_volume_map.mrc (#1) relative to
cryosparc_P12_J2822_005_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.99985758 0.01420410 0.00911423 -4.31684383  
-0.01417765 0.99989511 -0.00296025 3.09314746  
-0.00915532 0.00283061 0.99995409 1.09790908  
Axis 0.16909240 0.53346925 -0.82874503  
Axis point 215.51896605 306.19844274 0.00000000  
Rotation angle (degrees) 0.98114281  
Shift along axis 0.01026686  
  

> fitmap #1 inMap #2

Fit map cryosparc_P12_J2821_005_volume_map.mrc in map
cryosparc_P12_J2822_005_volume_map.mrc using 2499 points  
correlation = 0.9329, correlation about mean = 0.7839, overlap = 1733  
steps = 40, shift = 0.0492, angle = 0.0398 degrees  
  
Position of cryosparc_P12_J2821_005_volume_map.mrc (#1) relative to
cryosparc_P12_J2822_005_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.99986166 0.01433770 0.00843224 -4.25885057  
-0.01431303 0.99989313 -0.00297978 3.13705429  
-0.00847406 0.00285868 0.99996001 0.95662847  
Axis 0.17286149 0.50055124 -0.84827317  
Axis point 216.14940696 299.39645368 0.00000000  
Rotation angle (degrees) 0.96763870  
Shift along axis 0.02258289  
  

> fitmap #1 inMap #2

Fit map cryosparc_P12_J2821_005_volume_map.mrc in map
cryosparc_P12_J2822_005_volume_map.mrc using 2499 points  
correlation = 0.9329, correlation about mean = 0.7838, overlap = 1733  
steps = 40, shift = 0.00179, angle = 0.0176 degrees  
  
Position of cryosparc_P12_J2821_005_volume_map.mrc (#1) relative to
cryosparc_P12_J2822_005_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.99986626 0.01416021 0.00818251 -4.17933891  
-0.01413629 0.99989566 -0.00297394 3.10101918  
-0.00822377 0.00285787 0.99996211 0.90849306  
Axis 0.17552757 0.49380027 -0.85167562  
Axis point 216.33321702 297.48675606 0.00000000  
Rotation angle (degrees) 0.95185593  
Shift along axis 0.02395348  
  

> fitmap #1 inMap #2

Fit map cryosparc_P12_J2821_005_volume_map.mrc in map
cryosparc_P12_J2822_005_volume_map.mrc using 2499 points  
correlation = 0.9329, correlation about mean = 0.7838, overlap = 1732  
steps = 40, shift = 0.0323, angle = 0.0446 degrees  
  
Position of cryosparc_P12_J2821_005_volume_map.mrc (#1) relative to
cryosparc_P12_J2822_005_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.99985575 0.01446824 0.00889707 -4.34250930  
-0.01444198 0.99989118 -0.00300914 3.15911421  
-0.00893963 0.00288021 0.99995590 1.04540061  
Axis 0.17082184 0.51735734 -0.83854713  
Axis point 215.89373206 302.48199933 0.00000000  
Rotation angle (degrees) 0.98772950  
Shift along axis 0.01597784  
  

> vop subtract #1 #2 minrms True

Opened volume difference as #3, grid size 128,128,128, pixel 2.96, shown at
step 1, values float32  
Minimum RMS scale factor for "cryosparc_P12_J2822_005_volume_map.mrc #2" above
level 0.383 is 0.74849  
  

> close #3

> show #!2 models

> show #!1 models

> tile

2 models tiled  

> tile

2 models tiled  

> volume #2 level 0.3309

> fitmap #1 inMap #2

Fit map cryosparc_P12_J2821_005_volume_map.mrc in map
cryosparc_P12_J2822_005_volume_map.mrc using 2499 points  
correlation = 0.9329, correlation about mean = 0.7838, overlap = 1733  
steps = 920, shift = 127, angle = 0.0599 degrees  
  
Position of cryosparc_P12_J2821_005_volume_map.mrc (#1) relative to
cryosparc_P12_J2822_005_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.99987023 0.01400269 0.00796610 -4.11419036  
-0.01397990 0.99989805 -0.00290899 3.05817413  
-0.00800602 0.00279724 0.99996404 0.87753868  
Axis 0.17438787 0.48812340 -0.85517508  
Axis point 215.72763897 296.12310142 0.00000000  
Rotation angle (degrees) 0.93744325  
Shift along axis 0.02485227  
  

> vop subtract #1 #2 minrms True

Opened volume difference as #3, grid size 128,128,128, pixel 2.96, shown at
step 1, values float32  
Minimum RMS scale factor for "cryosparc_P12_J2822_005_volume_map.mrc #2" above
level 0.33092 is 0.74609  
  

> close #3

> show #!2 models

> show #!1 models

> tile

2 models tiled  

> hide #!2 models

> open
> /Users/francescappadoo/Downloads/rnacomposer-2024-07-05-171619/RNAFramework.pdb
> format pdb

Chain information for RNAFramework.pdb #3  
---  
Chain | Description  
A | No description available  
  

> transparency #1.1 50

> tile

2 models tiled  

> select add #3

10778 atoms, 11624 bonds, 336 residues, 1 model selected  

> view matrix models
> #3,-0.33015,0.011227,-0.94386,570.9,-0.56855,0.79583,0.20833,192.84,0.7535,0.60541,-0.25636,181.83

> view matrix models
> #3,-0.33078,-0.079337,-0.94037,570.24,-0.71759,0.66831,0.19603,192.41,0.61291,0.73964,-0.27799,182.76

> fitmap #3 inMap #1

Fit molecule RNAFramework.pdb (#3) to map
cryosparc_P12_J2821_005_volume_map.mrc (#1) using 10778 atoms  
average map value = 0.0001867, steps = 272  
shifted from previous position = 49.9  
rotated from previous position = 52.2 degrees  
atoms outside contour = 10778, contour level = 0.38253  
  
Position of RNAFramework.pdb (#3) relative to
cryosparc_P12_J2821_005_volume_map.mrc (#1) coordinates:  
Matrix rotation and translation  
0.14917059 0.54482354 -0.82517601 144.60378530  
0.66711748 -0.67142498 -0.32271155 219.06293694  
-0.72986464 -0.50235027 -0.46361817 371.17593286  
Axis -0.75701879 -0.40165338 0.51536115  
Axis point 0.00000000 85.89031387 226.29287795  
Rotation angle (degrees) 173.18587352  
Shift along axis -6.16549766  
  

> fitmap #3 inMap #1

Fit molecule RNAFramework.pdb (#3) to map
cryosparc_P12_J2821_005_volume_map.mrc (#1) using 10778 atoms  
average map value = 0.0001863, steps = 44  
shifted from previous position = 0.0751  
rotated from previous position = 0.0679 degrees  
atoms outside contour = 10778, contour level = 0.38253  
  
Position of RNAFramework.pdb (#3) relative to
cryosparc_P12_J2821_005_volume_map.mrc (#1) coordinates:  
Matrix rotation and translation  
0.14851792 0.54414586 -0.82574070 144.62991725  
0.66741450 -0.67130945 -0.32233756 219.03537411  
-0.72972618 -0.50323841 -0.46287232 371.11667397  
Axis -0.75678768 -0.40167087 0.51568684  
Axis point 0.00000000 85.96492578 226.25210055  
Rotation angle (degrees) 173.13566257  
Shift along axis -6.05428471  
  

> view matrix models
> #3,-0.66102,-0.65126,-0.37271,614.17,-0.74996,0.58971,0.29967,175.68,0.024628,0.4776,-0.87823,162.08

> tile

2 models tiled  

> view matrix models
> #3,-0.1464,0.32546,-0.93415,644.1,-0.78463,0.53689,0.31002,191.61,0.60244,0.77835,0.17677,187.02

> ui mousemode right "translate selected models"

> view matrix models
> #3,-0.1464,0.32546,-0.93415,440.69,-0.78463,0.53689,0.31002,170.68,0.60244,0.77835,0.17677,187.02

> fitmap #3 inMap #1

Fit molecule RNAFramework.pdb (#3) to map
cryosparc_P12_J2821_005_volume_map.mrc (#1) using 10778 atoms  
average map value = 0.2663, steps = 168  
shifted from previous position = 18.6  
rotated from previous position = 32.3 degrees  
atoms outside contour = 7895, contour level = 0.38253  
  
Position of RNAFramework.pdb (#3) relative to
cryosparc_P12_J2821_005_volume_map.mrc (#1) coordinates:  
Matrix rotation and translation  
0.42116682 0.90348570 -0.07957448 190.04332499  
0.65163889 -0.36245340 -0.66632896 194.46179074  
-0.63086073 0.22878183 -0.74139976 184.33555862  
Axis 0.82803758 0.50997679 -0.23297521  
Axis point 0.00000000 -2.78479300 134.06413330  
Rotation angle (degrees) 147.28222808  
Shift along axis 213.58839894  
  

> fitmap #3 inMap #1

Fit molecule RNAFramework.pdb (#3) to map
cryosparc_P12_J2821_005_volume_map.mrc (#1) using 10778 atoms  
average map value = 0.2663, steps = 132  
shifted from previous position = 36.1  
rotated from previous position = 0.0125 degrees  
atoms outside contour = 7898, contour level = 0.38253  
  
Position of RNAFramework.pdb (#3) relative to
cryosparc_P12_J2821_005_volume_map.mrc (#1) coordinates:  
Matrix rotation and translation  
0.42127992 0.90343835 -0.07951332 190.01131411  
0.65151012 -0.36245960 -0.66645150 194.47843198  
-0.63091821 0.22895890 -0.74129618 184.34728502  
Axis 0.82806382 0.50993202 -0.23297993  
Axis point 0.00000000 -2.77446531 134.07710592  
Rotation angle (degrees) 147.27107396  
Shift along axis 213.56305591  
  

> select up

10778 atoms, 11624 bonds, 336 residues, 5 models selected  

> select up

10778 atoms, 11624 bonds, 336 residues, 5 models selected  

> select down

10778 atoms, 11624 bonds, 336 residues, 1 model selected  

> select up

10778 atoms, 11624 bonds, 336 residues, 5 models selected  

> select down

10778 atoms, 11624 bonds, 336 residues, 1 model selected  

> fitmap #3 inMap #1 search 200 resolution 15

Opened RNAFramework.pdb map 15 as #4, grid size 43,37,50, pixel 5, shown at
level 0.0376, step 1, values float32  
Found 52 unique fits from 200 random placements having fraction of points
inside contour >= 0.100 (200 of 200).  
  
Correlations and times found:  
0.5725 (33), 0.5616 (20), 0.549 (8), 0.534 (19), 0.5285 (1), 0.5262 (1),
0.5178 (4), 0.5177 (8), 0.5174 (4), 0.5155 (4), 0.5044 (4), 0.5042 (6), 0.5032
(2), 0.5028 (1), 0.5019 (3), 0.5013 (1), 0.5001 (7), 0.4977 (1), 0.4977 (1),
0.497 (2), 0.4953 (10), 0.4946 (4), 0.494 (5), 0.4923 (2), 0.4917 (2), 0.4888
(1), 0.4852 (1), 0.485 (1), 0.4844 (1), 0.4844 (1), 0.4824 (2), 0.4809 (1),
0.4721 (2), 0.465 (4), 0.4623 (5), 0.4585 (2), 0.4554 (1), 0.4553 (2), 0.4415
(1), 0.4368 (5), 0.4332 (1), 0.4331 (4), 0.4322 (1), 0.4216 (1), 0.418 (1),
0.3986 (2), 0.3846 (1), 0.3835 (1), 0.3817 (1), 0.3815 (1), 0.3756 (1), 0.3599
(2)  
  
Best fit found:  
Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2821_005_volume_map.mrc
using 2353 points  
correlation = 0.5725, correlation about mean = 0.3095, overlap = 107  
steps = 452, shift = 20.2, angle = 105 degrees  
Position of RNAFramework.pdb map 15 (#4) relative to
cryosparc_P12_J2821_005_volume_map.mrc (#1) coordinates:  
Matrix rotation and translation  
0.48220738 0.87323413 -0.07027229 190.18022175  
0.67216748 -0.42023230 -0.60958647 196.19389648  
-0.56184242 0.24671235 -0.78959866 183.62545689  
Axis 0.84981539 0.48784822 -0.19954429  
Axis point 0.00000000 7.30102482 128.22094810  
Rotation angle (degrees) 149.74730431  
Shift along axis 220.68951131  
  
Found 52 fits.  

> ui tool show "Fit in Map"

Opened RNAFramework.pdb map 20 as #4, grid size 37,32,42, pixel 6.67, shown at
level 0.0286, step 1, values float32  
Opened RNAFramework.pdb map 20 as #5, grid size 37,32,42, pixel 6.67, shown at
level 0.0286, step 1, values float32  

> fitmap #3 inMap #1 resolution 20 metric correlation

Fit map RNAFramework.pdb map 20 in map cryosparc_P12_J2821_005_volume_map.mrc
using 1268 points  
correlation = 0.5946, correlation about mean = 0.4182, overlap = 42.97  
steps = 72, shift = 1.98, angle = 3.86 degrees  
  
Position of RNAFramework.pdb map 20 (#5) relative to
cryosparc_P12_J2821_005_volume_map.mrc (#1) coordinates:  
Matrix rotation and translation  
0.52300102 0.84899342 -0.07536652 190.82843055  
0.67703002 -0.46752308 -0.56837707 198.36850067  
-0.51778400 0.24623639 -0.81930903 183.47405654  
Axis 0.86402279 0.46925174 -0.18239362  
Axis point 0.00000000 14.83307688 125.36294115  
Rotation angle (degrees) 151.87430724  
Shift along axis 224.50037909  
  
Average map value = 0.2611 for 10778 atoms, 7908 outside contour  

> fitmap #3 inMap #1 resolution 20 metric correlation

Fit map RNAFramework.pdb map 20 in map cryosparc_P12_J2821_005_volume_map.mrc
using 1268 points  
correlation = 0.5946, correlation about mean = 0.4183, overlap = 42.97  
steps = 100, shift = 32.9, angle = 0.0253 degrees  
  
Position of RNAFramework.pdb map 20 (#4) relative to
cryosparc_P12_J2821_005_volume_map.mrc (#1) coordinates:  
Matrix rotation and translation  
0.52323619 0.84887949 -0.07501667 190.77806226  
0.67698675 -0.46751743 -0.56843324 198.40322954  
-0.51760294 0.24663956 -0.81930217 183.47938799  
Axis 0.86408545 0.46920025 -0.18222914  
Axis point 0.00000000 14.86227869 125.35366714  
Rotation angle (degrees) 151.85925879  
Shift along axis 224.50410194  
  
Average map value = 0.261 for 10778 atoms, 7911 outside contour  

> fitmap #3 inMap #1 resolution 20 metric correlation

Fit map RNAFramework.pdb map 20 in map cryosparc_P12_J2821_005_volume_map.mrc
using 1268 points  
correlation = 0.5947, correlation about mean = 0.4183, overlap = 42.97  
steps = 68, shift = 13.2, angle = 0.0264 degrees  
  
Position of RNAFramework.pdb map 20 (#4) relative to
cryosparc_P12_J2821_005_volume_map.mrc (#1) coordinates:  
Matrix rotation and translation  
0.52303137 0.84897085 -0.07541008 190.79180727  
0.67692096 -0.46753253 -0.56849919 198.39682827  
-0.51789592 0.24629625 -0.81922029 183.47902367  
Axis 0.86402785 0.46922218 -0.18244568  
Axis point 0.00000000 14.85139546 125.37779860  
Rotation angle (degrees) 151.86764486  
Shift along axis 224.46667252  
  
Average map value = 0.261 for 10778 atoms, 7907 outside contour  

> select subtract #3

Nothing selected  

> select down

Nothing selected  

> select #3:63-68

189 atoms, 203 bonds, 6 residues, 1 model selected  

> color sel orange

> fitmap #3 inMap #1 resolution 20 metric correlation

Fit map RNAFramework.pdb map 20 in map cryosparc_P12_J2821_005_volume_map.mrc
using 1268 points  
correlation = 0.5947, correlation about mean = 0.4184, overlap = 42.97  
steps = 52, shift = 3.8, angle = 0.037 degrees  
  
Position of RNAFramework.pdb map 20 (#4) relative to
cryosparc_P12_J2821_005_volume_map.mrc (#1) coordinates:  
Matrix rotation and translation  
0.52277747 0.84907534 -0.07599199 190.79646872  
0.67684058 -0.46761518 -0.56852690 198.39895416  
-0.51825720 0.24577859 -0.81914729 183.47964272  
Axis 0.86396004 0.46923356 -0.18273726  
Axis point 0.00000000 14.85460458 125.40940339  
Rotation angle (degrees) 151.88366182  
Shift along axis 224.40740714  
  
Average map value = 0.261 for 10778 atoms, 7908 outside contour  

> fitmap #3 inMap #1 resolution 20 metric correlation

Fit map RNAFramework.pdb map 20 in map cryosparc_P12_J2821_005_volume_map.mrc
using 1268 points  
correlation = 0.5947, correlation about mean = 0.4183, overlap = 42.97  
steps = 44, shift = 0.01, angle = 0.0426 degrees  
  
Position of RNAFramework.pdb map 20 (#4) relative to
cryosparc_P12_J2821_005_volume_map.mrc (#1) coordinates:  
Matrix rotation and translation  
0.52306744 0.84895654 -0.07532097 190.79063410  
0.67693720 -0.46751879 -0.56849114 198.39678351  
-0.51783826 0.24637164 -0.81923407 183.47904317  
Axis 0.86403754 0.46922200 -0.18240024  
Axis point 0.00000000 14.85125551 125.37276377  
Rotation angle (degrees) 151.86545631  
Shift along axis 224.47578377  
  
Average map value = 0.261 for 10778 atoms, 7907 outside contour  

> fitmap #3 inMap #1 resolution 20 metric correlation

Fit map RNAFramework.pdb map 20 in map cryosparc_P12_J2821_005_volume_map.mrc
using 1268 points  
correlation = 0.5772, correlation about mean = 0.4185, overlap = 40.7  
steps = 44, shift = 0.735, angle = 1.03 degrees  
  
Position of RNAFramework.pdb map 20 (#4) relative to
cryosparc_P12_J2821_005_volume_map.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.46549444 -0.86965418 0.16436700 187.88701322  
-0.77314804 0.48995422 0.40272437 168.18463505  
-0.43076320 0.06038592 -0.90044239 192.95859825  
Axis -0.49376873 0.85838060 0.13919475  
Axis point 161.28338062 0.00000000 59.23013495  
Rotation angle (degrees) 159.71691777  
Shift along axis 78.45252100  
  
Average map value = 0.2525 for 10778 atoms, 7947 outside contour  

> fitmap #3 inMap #1 resolution 20 metric correlation

Fit map RNAFramework.pdb map 20 in map cryosparc_P12_J2821_005_volume_map.mrc
using 1268 points  
correlation = 0.5652, correlation about mean = 0.3603, overlap = 40.47  
steps = 60, shift = 1.37, angle = 1.93 degrees  
  
Position of RNAFramework.pdb map 20 (#4) relative to
cryosparc_P12_J2821_005_volume_map.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.52676158 -0.84634551 -0.07887641 192.42309184  
-0.84260823 0.53214147 -0.08268476 178.84285558  
0.11195333 0.02290675 -0.99344936 188.58374838  
Axis 0.48408202 -0.87485487 0.01713349  
Axis point 139.76375642 0.00000000 102.96734513  
Rotation angle (degrees) 173.73865756  
Shift along axis -60.08188424  
  
Average map value = 0.2493 for 10778 atoms, 8093 outside contour  

> fitmap #3 inMap #1 resolution 20 metric correlation

Fit map RNAFramework.pdb map 20 in map cryosparc_P12_J2821_005_volume_map.mrc
using 1268 points  
correlation = 0.5652, correlation about mean = 0.3603, overlap = 40.47  
steps = 28, shift = 0.0511, angle = 0.0248 degrees  
  
Position of RNAFramework.pdb map 20 (#4) relative to
cryosparc_P12_J2821_005_volume_map.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.52688305 -0.84624920 -0.07909822 192.46507861  
-0.84247972 0.53229475 -0.08300697 178.81576367  
0.11234819 0.02290367 -0.99340485 188.58844444  
Axis 0.48400397 -0.87489623 0.01722624  
Axis point 139.74793201 -0.00000000 103.00124996  
Rotation angle (degrees) 173.71864061  
Shift along axis -60.04270678  
  
Average map value = 0.2495 for 10778 atoms, 8088 outside contour  

> fitmap #3 inMap #1 resolution 20 metric correlation

Fit map RNAFramework.pdb map 20 in map cryosparc_P12_J2821_005_volume_map.mrc
using 1268 points  
correlation = 0.5457, correlation about mean = 0.3501, overlap = 36.67  
steps = 68, shift = 1.25, angle = 4.44 degrees  
  
Position of RNAFramework.pdb map 20 (#4) relative to
cryosparc_P12_J2821_005_volume_map.mrc (#1) coordinates:  
Matrix rotation and translation  
0.57869561 0.74887648 -0.32294799 193.28898432  
-0.64385703 0.66257154 0.38268397 188.62991332  
0.50055919 -0.01352524 0.86559659 200.38866384  
Axis -0.23785080 -0.49436469 -0.83608047  
Axis point 109.38237612 -99.13642631 0.00000000  
Rotation angle (degrees) 56.39722504  
Shift along axis -306.76695640  
  
Average map value = 0.2203 for 10778 atoms, 8305 outside contour  

> fitmap #3 inMap #1 resolution 20 metric correlation

Fit map RNAFramework.pdb map 20 in map cryosparc_P12_J2821_005_volume_map.mrc
using 1268 points  
correlation = 0.5196, correlation about mean = 0.2823, overlap = 36.78  
steps = 68, shift = 2.2, angle = 2.76 degrees  
  
Position of RNAFramework.pdb map 20 (#4) relative to
cryosparc_P12_J2821_005_volume_map.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.27622428 -0.96109318 0.00029408 196.13098039  
0.95673476 -0.27494249 0.09521146 209.49368048  
-0.09142626 0.02658109 0.99545699 196.99965941  
Axis -0.03572180 0.04774003 0.99822084  
Axis point 26.29576756 176.57324184 0.00000000  
Rotation angle (degrees) 106.13221934  
Shift along axis 199.64424837  
  
Average map value = 0.2252 for 10778 atoms, 8351 outside contour  

> fitmap #3 inMap #1 resolution 20 metric correlation

Fit map RNAFramework.pdb map 20 in map cryosparc_P12_J2821_005_volume_map.mrc
using 1268 points  
correlation = 0.5196, correlation about mean = 0.2824, overlap = 36.77  
steps = 28, shift = 0.0537, angle = 0.017 degrees  
  
Position of RNAFramework.pdb map 20 (#4) relative to
cryosparc_P12_J2821_005_volume_map.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.27618214 -0.96110534 0.00002104 196.08278610  
0.95672980 -0.27492269 0.09531837 209.46975477  
-0.09160524 0.02634538 0.99544680 197.00430204  
Axis -0.03589985 0.04769070 0.99821681  
Axis point 26.29149011 176.56315761 0.00000000  
Rotation angle (degrees) 106.13067596  
Shift along axis 199.60342224  
  
Average map value = 0.2251 for 10778 atoms, 8353 outside contour  

> fitmap #3 inMap #1 resolution 20 metric correlation

Fit map RNAFramework.pdb map 20 in map cryosparc_P12_J2821_005_volume_map.mrc
using 1268 points  
correlation = 0.5196, correlation about mean = 0.2823, overlap = 36.79  
steps = 52, shift = 4.13, angle = 0.019 degrees  
  
Position of RNAFramework.pdb map 20 (#4) relative to
cryosparc_P12_J2821_005_volume_map.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.27610543 -0.96112732 0.00031410 196.13700509  
0.95677155 -0.27482302 0.09518665 209.49227138  
-0.09140021 0.02658209 0.99545936 197.00061896  
Axis -0.03570707 0.04773516 0.99822160  
Axis point 26.28779192 176.58411995 0.00000000  
Rotation angle (degrees) 106.12504160  
Shift along axis 199.64694119  
  
Average map value = 0.2252 for 10778 atoms, 8352 outside contour  

> select down

189 atoms, 203 bonds, 6 residues, 1 model selected  

> select down

189 atoms, 203 bonds, 6 residues, 1 model selected  

> select down

189 atoms, 203 bonds, 6 residues, 1 model selected  

> select down

189 atoms, 203 bonds, 6 residues, 1 model selected  

> fitmap #3 inMap #1 resolution 20 metric correlation

Fit map RNAFramework.pdb map 20 in map cryosparc_P12_J2821_005_volume_map.mrc
using 1268 points  
correlation = 0.5946, correlation about mean = 0.4182, overlap = 42.97  
steps = 72, shift = 1.98, angle = 3.86 degrees  
  
Position of RNAFramework.pdb map 20 (#4) relative to
cryosparc_P12_J2821_005_volume_map.mrc (#1) coordinates:  
Matrix rotation and translation  
0.52300054 0.84899370 -0.07536681 190.82847917  
0.67703012 -0.46752279 -0.56837724 198.36853323  
-0.51778436 0.24623600 -0.81930891 183.47401480  
Axis 0.86402266 0.46925188 -0.18239383  
Axis point 0.00000000 14.83305542 125.36295022  
Rotation angle (degrees) 151.87431120  
Shift along axis 224.50040889  
  
Average map value = 0.2611 for 10778 atoms, 7908 outside contour  

> fitmap #3 inMap #1 resolution 20 metric correlation

Fit map RNAFramework.pdb map 20 in map cryosparc_P12_J2821_005_volume_map.mrc
using 1268 points  
correlation = 0.5947, correlation about mean = 0.4183, overlap = 42.97  
steps = 40, shift = 0.0321, angle = 0.0157 degrees  
  
Position of RNAFramework.pdb map 20 (#4) relative to
cryosparc_P12_J2821_005_volume_map.mrc (#1) coordinates:  
Matrix rotation and translation  
0.52294154 0.84901450 -0.07554159 190.80379769  
0.67689974 -0.46751535 -0.56853861 198.38855178  
-0.51801435 0.24617837 -0.81918084 183.47664664  
Axis 0.86400154 0.46923920 -0.18252647  
Axis point 0.00000000 14.83995181 125.38571089  
Rotation angle (degrees) 151.86966188  
Shift along axis 224.45711452  
  
Average map value = 0.2611 for 10778 atoms, 7908 outside contour  

> select add #3

10778 atoms, 11624 bonds, 336 residues, 1 model selected  

> view matrix models
> #3,-0.35283,0.18449,-0.91732,412.63,-0.74405,0.53913,0.39462,169.67,0.56736,0.82177,-0.052956,184.95

> fitmap #3 inMap #1

Fit molecule RNAFramework.pdb (#3) to map
cryosparc_P12_J2821_005_volume_map.mrc (#1) using 10778 atoms  
average map value = 0.2663, steps = 92  
shifted from previous position = 9.72  
rotated from previous position = 9.37 degrees  
atoms outside contour = 7899, contour level = 0.38253  
  
Position of RNAFramework.pdb (#3) relative to
cryosparc_P12_J2821_005_volume_map.mrc (#1) coordinates:  
Matrix rotation and translation  
0.42166250 0.90326335 -0.07947364 189.99625655  
0.65158664 -0.36278984 -0.66619697 194.48668114  
-0.63058351 0.22912632 -0.74152915 184.34566206  
Axis 0.82819858 0.50979173 -0.23280786  
Axis point -0.00000000 -2.71462857 134.04770180  
Rotation angle (degrees) 147.28064696  
Shift along axis 213.58521399  
  

> fitmap #3 inMap #1

Fit molecule RNAFramework.pdb (#3) to map
cryosparc_P12_J2821_005_volume_map.mrc (#1) using 10778 atoms  
average map value = 0.2663, steps = 148  
shifted from previous position = 21.8  
rotated from previous position = 0.00836 degrees  
atoms outside contour = 7900, contour level = 0.38253  
  
Position of RNAFramework.pdb (#3) relative to
cryosparc_P12_J2821_005_volume_map.mrc (#1) coordinates:  
Matrix rotation and translation  
0.42153738 0.90331747 -0.07952230 190.00096666  
0.65160433 -0.36272364 -0.66621571 194.48868578  
-0.63064888 0.22901775 -0.74150709 184.33191072  
Axis 0.82815945 0.50983426 -0.23285391  
Axis point 0.00000000 -2.72138513 134.04649584  
Rotation angle (degrees) 147.28260084  
Shift along axis 213.58568499  
  

> fitmap #3 inMap #1

Fit molecule RNAFramework.pdb (#3) to map
cryosparc_P12_J2821_005_volume_map.mrc (#1) using 10778 atoms  
average map value = 0.2663, steps = 48  
shifted from previous position = 0.0223  
rotated from previous position = 0.0136 degrees  
atoms outside contour = 7899, contour level = 0.38253  
  
Position of RNAFramework.pdb (#3) relative to
cryosparc_P12_J2821_005_volume_map.mrc (#1) coordinates:  
Matrix rotation and translation  
0.42174548 0.90322580 -0.07946020 189.98682693  
0.65156498 -0.36284402 -0.66618865 194.49239763  
-0.63055040 0.22918857 -0.74153806 184.34754129  
Axis 0.82822476 0.50975895 -0.23278650  
Axis point 0.00000000 -2.70276906 134.04656501  
Rotation angle (degrees) 147.27959330  
Shift along axis 213.58241756  
  

> fitmap #3 inMap #1

Fit molecule RNAFramework.pdb (#3) to map
cryosparc_P12_J2821_005_volume_map.mrc (#1) using 10778 atoms  
average map value = 0.2663, steps = 28  
shifted from previous position = 0.0756  
rotated from previous position = 0.0154 degrees  
atoms outside contour = 7893, contour level = 0.38253  
  
Position of RNAFramework.pdb (#3) relative to
cryosparc_P12_J2821_005_volume_map.mrc (#1) coordinates:  
Matrix rotation and translation  
0.42182874 0.90319590 -0.07935806 190.04924002  
0.65171306 -0.36289476 -0.66601614 194.45927482  
-0.63034164 0.22922607 -0.74170394 184.32146553  
Axis 0.82825892 0.50975821 -0.23266654  
Axis point 0.00000000 -2.71856138 134.01124249  
Rotation angle (degrees) 147.28666186  
Shift along axis 213.65175469  
  

> fitmap #3 inMap #1

Fit molecule RNAFramework.pdb (#3) to map
cryosparc_P12_J2821_005_volume_map.mrc (#1) using 10778 atoms  
average map value = 0.2663, steps = 28  
shifted from previous position = 0.0842  
rotated from previous position = 0.0112 degrees  
atoms outside contour = 7900, contour level = 0.38253  
  
Position of RNAFramework.pdb (#3) relative to
cryosparc_P12_J2821_005_volume_map.mrc (#1) coordinates:  
Matrix rotation and translation  
0.42176877 0.90321301 -0.07948193 189.97720373  
0.65160978 -0.36289653 -0.66611622 194.49872714  
-0.63048853 0.22915582 -0.74160079 184.33976167  
Axis 0.82823713 0.50974911 -0.23276404  
Axis point 0.00000000 -2.68533320 134.03708081  
Rotation angle (degrees) 147.28446682  
Shift along axis 213.58405880  
  

> fitmap #3 inMap #1

Fit molecule RNAFramework.pdb (#3) to map
cryosparc_P12_J2821_005_volume_map.mrc (#1) using 10778 atoms  
average map value = 0.2663, steps = 164  
shifted from previous position = 26.1  
rotated from previous position = 0.0155 degrees  
atoms outside contour = 7899, contour level = 0.38253  
  
Position of RNAFramework.pdb (#3) relative to
cryosparc_P12_J2821_005_volume_map.mrc (#1) coordinates:  
Matrix rotation and translation  
0.42157607 0.90330209 -0.07949196 189.99730653  
0.65156861 -0.36272184 -0.66625162 194.48561735  
-0.63065992 0.22908127 -0.74147808 184.34857683  
Axis 0.82816856 0.50982152 -0.23284942  
Axis point 0.00000000 -2.72660324 134.05584018  
Rotation angle (degrees) 147.27891732  
Shift along axis 213.57728868  
  

> fitmap #3 inMap #1

Fit molecule RNAFramework.pdb (#3) to map
cryosparc_P12_J2821_005_volume_map.mrc (#1) using 10778 atoms  
average map value = 0.2663, steps = 44  
shifted from previous position = 0.0568  
rotated from previous position = 0.0186 degrees  
atoms outside contour = 7896, contour level = 0.38253  
  
Position of RNAFramework.pdb (#3) relative to
cryosparc_P12_J2821_005_volume_map.mrc (#1) coordinates:  
Matrix rotation and translation  
0.42128661 0.90343175 -0.07955298 190.04418777  
0.65166509 -0.36255089 -0.66625031 194.46163653  
-0.63075366 0.22884044 -0.74147271 184.33285694  
Axis 0.82807948 0.50993485 -0.23291806  
Axis point 0.00000000 -2.76950162 134.05342293  
Rotation angle (degrees) 147.28491405  
Shift along axis 213.60000569  
  

> fitmap #3 inMap #1

Fit molecule RNAFramework.pdb (#3) to map
cryosparc_P12_J2821_005_volume_map.mrc (#1) using 10778 atoms  
average map value = 0.2663, steps = 28  
shifted from previous position = 0.0678  
rotated from previous position = 0.012 degrees  
atoms outside contour = 7898, contour level = 0.38253  
  
Position of RNAFramework.pdb (#3) relative to
cryosparc_P12_J2821_005_volume_map.mrc (#1) coordinates:  
Matrix rotation and translation  
0.42131912 0.90341562 -0.07956402 189.98779273  
0.65152069 -0.36253482 -0.66640026 194.49059834  
-0.63088110 0.22892957 -0.74133676 184.35407693  
Axis 0.82808063 0.50990706 -0.23297482  
Axis point 0.00000000 -2.75117292 134.07827763  
Rotation angle (degrees) 147.27513419  
Shift along axis 213.54748052  
  

> fitmap #3 inMap #1

Fit molecule RNAFramework.pdb (#3) to map
cryosparc_P12_J2821_005_volume_map.mrc (#1) using 10778 atoms  
average map value = 0.2663, steps = 24  
shifted from previous position = 0.0264  
rotated from previous position = 0.0814 degrees  
atoms outside contour = 7900, contour level = 0.38253  
  
Position of RNAFramework.pdb (#3) relative to
cryosparc_P12_J2821_005_volume_map.mrc (#1) coordinates:  
Matrix rotation and translation  
0.42237169 0.90294122 -0.07936825 189.98674416  
0.65172014 -0.36337614 -0.66574669 194.49531789  
-0.62997064 0.22946666 -0.74194471 184.33245716  
Axis 0.82844612 0.50953708 -0.23248439  
Axis point 0.00000000 -2.61530487 133.98860569  
Rotation angle (degrees) 147.29616256  
Shift along axis 213.64193805  
  

> hide #!1 models

> show #!2 models

> transparency #2.1 50

> fitmap #3 inMap #2 search 200 resolution 15

Opened RNAFramework.pdb map 15 as #4, grid size 43,37,50, pixel 5, shown at
level 0.0376, step 1, values float32  
Found 42 unique fits from 200 random placements having fraction of points
inside contour >= 0.100 (199 of 200).  
  
Correlations and times found:  
0.6021 (28), 0.5683 (22), 0.5634 (17), 0.5542 (10), 0.5489 (17), 0.539 (6),
0.5382 (4), 0.5367 (6), 0.5351 (6), 0.5283 (8), 0.5278 (5), 0.5265 (5), 0.5251
(6), 0.5246 (4), 0.5183 (8), 0.5142 (4), 0.5113 (4), 0.5089 (3), 0.5068 (1),
0.5044 (2), 0.5019 (3), 0.4996 (2), 0.4989 (3), 0.4968 (1), 0.496 (2), 0.4916
(1), 0.4912 (1), 0.4878 (2), 0.473 (2), 0.4596 (1), 0.4567 (1), 0.4553 (2),
0.4535 (1), 0.4519 (1), 0.437 (1), 0.4361 (1), 0.4311 (2), 0.4296 (1), 0.4187
(2), 0.4127 (1), 0.4057 (1), 0.3679 (1)  
  
Best fit found:  
Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2822_005_volume_map.mrc
using 2353 points  
correlation = 0.6021, correlation about mean = 0.338, overlap = 135.4  
steps = 256, shift = 11.2, angle = 79.2 degrees  
Position of RNAFramework.pdb map 15 (#4) relative to
cryosparc_P12_J2822_005_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.55599115 0.82149720 -0.12655501 192.43366753  
0.61278467 -0.50798978 -0.60534401 199.62120735  
-0.56157702 0.25901494 -0.78583865 181.56038097  
Axis 0.87316938 0.43945620 -0.21083994  
Axis point 0.00000000 16.89837566 129.79282410  
Rotation angle (degrees) 150.33322218  
Shift along axis 217.47178444  
  
Found 42 fits.  
Opened RNAFramework.pdb map 20 as #4, grid size 37,32,42, pixel 6.67, shown at
level 0.0286, step 1, values float32  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/cmd_line/tool.py", line 319, in execute  
cmd.run(cmd_text)  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/cli.py", line 3213, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_fit/fitcmd.py", line 147, in fitmap  
show_fit_list(fits, show_first, session)  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_fit/fitcmd.py", line 273, in show_fit_list  
flist[0].place_models(session)  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_fit/search.py", line 179, in place_models  
m.position = tf  
^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/drawing.py", line 266, in __setattr__  
super(Drawing, self).__setattr__(key, value)  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/models.py", line 252, in _model_set_position  
if pos != self.position:  
^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position  
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)  
RuntimeError: Tried to get the position of deleted drawing "RNAFramework.pdb
map 15"  
  
RuntimeError: Tried to get the position of deleted drawing "RNAFramework.pdb
map 15"  
  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position  
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)  
  
See log for complete Python traceback.  
  

> fitmap #3 inMap #2 search 200 resolution 15

Opened RNAFramework.pdb map 15 as #4, grid size 43,37,50, pixel 5, shown at
level 0.0376, step 1, values float32  
Found 42 unique fits from 200 random placements having fraction of points
inside contour >= 0.100 (199 of 200).  
  
Correlations and times found:  
0.6021 (26), 0.5683 (22), 0.5633 (16), 0.5543 (10), 0.5489 (18), 0.5391 (4),
0.5383 (4), 0.5367 (9), 0.5351 (5), 0.5283 (6), 0.5278 (6), 0.5265 (4), 0.5252
(8), 0.5246 (4), 0.5183 (8), 0.5141 (4), 0.5111 (5), 0.5093 (1), 0.5089 (5),
0.5068 (1), 0.5026 (1), 0.502 (4), 0.4996 (1), 0.4989 (2), 0.4968 (2), 0.4966
(1), 0.496 (3), 0.4909 (1), 0.4878 (1), 0.473 (2), 0.4568 (1), 0.4553 (2),
0.4535 (1), 0.4519 (1), 0.4369 (1), 0.431 (1), 0.4296 (1), 0.4187 (3), 0.4058
(1), 0.4037 (1), 0.3679 (1), 0.3601 (1)  
  
Best fit found:  
Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2822_005_volume_map.mrc
using 2353 points  
correlation = 0.6021, correlation about mean = 0.338, overlap = 135.4  
steps = 248, shift = 31.5, angle = 63.6 degrees  
Position of RNAFramework.pdb map 15 (#4) relative to
cryosparc_P12_J2822_005_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.55598003 0.82149415 -0.12662401 192.43601485  
0.61277507 -0.50802468 -0.60532447 199.61928023  
-0.56159854 0.25895620 -0.78584266 181.56451051  
Axis 0.87316778 0.43944723 -0.21086527  
Axis point 0.00000000 16.89992108 129.79685150  
Rotation angle (degrees) 150.33611802  
Shift along axis 217.46541876  
  
Found 42 fits.  
Opened RNAFramework.pdb map 20 as #4, grid size 37,32,42, pixel 6.67, shown at
level 0.0286, step 1, values float32  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/cmd_line/tool.py", line 319, in execute  
cmd.run(cmd_text)  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/cli.py", line 3213, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_fit/fitcmd.py", line 147, in fitmap  
show_fit_list(fits, show_first, session)  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_fit/fitcmd.py", line 273, in show_fit_list  
flist[0].place_models(session)  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_fit/search.py", line 179, in place_models  
m.position = tf  
^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/drawing.py", line 266, in __setattr__  
super(Drawing, self).__setattr__(key, value)  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/models.py", line 252, in _model_set_position  
if pos != self.position:  
^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position  
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)  
RuntimeError: Tried to get the position of deleted drawing "RNAFramework.pdb
map 15"  
  
RuntimeError: Tried to get the position of deleted drawing "RNAFramework.pdb
map 15"  
  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position  
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)  
  
See log for complete Python traceback.  
  

> select subtract #3

Nothing selected  

> fitmap #3 inMap #2 search 200 resolution 15

Opened RNAFramework.pdb map 15 as #4, grid size 43,37,50, pixel 5, shown at
level 0.0376, step 1, values float32  
Found 39 unique fits from 200 random placements having fraction of points
inside contour >= 0.100 (200 of 200).  
  
Correlations and times found:  
0.602 (28), 0.5684 (20), 0.5633 (16), 0.5542 (8), 0.5489 (17), 0.5391 (5),
0.5382 (8), 0.5367 (8), 0.5351 (6), 0.5283 (9), 0.5277 (7), 0.5266 (5), 0.525
(7), 0.5247 (1), 0.5184 (5), 0.5142 (4), 0.5108 (5), 0.5093 (1), 0.5089 (2),
0.5042 (1), 0.502 (6), 0.502 (1), 0.4997 (2), 0.4989 (3), 0.4968 (3), 0.496
(1), 0.4917 (2), 0.4877 (2), 0.473 (4), 0.4717 (1), 0.4571 (1), 0.4553 (1),
0.4535 (1), 0.437 (1), 0.4221 (1), 0.4187 (3), 0.4127 (1), 0.39 (1), 0.3679
(2)  
  
Best fit found:  
Fit map RNAFramework.pdb map 15 in map cryosparc_P12_J2822_005_volume_map.mrc
using 2353 points  
correlation = 0.602, correlation about mean = 0.3378, overlap = 135.4  
steps = 644, shift = 31.6, angle = 78.9 degrees  
Position of RNAFramework.pdb map 15 (#4) relative to
cryosparc_P12_J2822_005_volume_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.55642122 0.82107850 -0.12738012 192.49700580  
0.61225611 -0.50879760 -0.60520043 199.61619735  
-0.56172761 0.25875699 -0.78581605 181.57285517  
Axis 0.87331403 0.43905146 -0.21108392  
Axis point 0.00000000 16.95484171 129.83138545  
Rotation angle (degrees) 150.35378473  
Shift along axis 217.42500710  
  
Found 39 fits.  
Opened RNAFramework.pdb map 20 as #4, grid size 37,32,42, pixel 6.67, shown at
level 0.0286, step 1, values float32  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/cmd_line/tool.py", line 319, in execute  
cmd.run(cmd_text)  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/cli.py", line 3213, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_fit/fitcmd.py", line 147, in fitmap  
show_fit_list(fits, show_first, session)  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_fit/fitcmd.py", line 273, in show_fit_list  
flist[0].place_models(session)  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_fit/search.py", line 179, in place_models  
m.position = tf  
^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/drawing.py", line 266, in __setattr__  
super(Drawing, self).__setattr__(key, value)  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/models.py", line 252, in _model_set_position  
if pos != self.position:  
^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position  
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)  
RuntimeError: Tried to get the position of deleted drawing "RNAFramework.pdb
map 15"  
  
RuntimeError: Tried to get the position of deleted drawing "RNAFramework.pdb
map 15"  
  
File
"/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position  
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)  
  
See log for complete Python traceback.  
  




OpenGL version: 4.1 Metal - 83.1
OpenGL renderer: Apple M1
OpenGL vendor: Apple

Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.3
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Air
      Model Identifier: MacBookAir10,1
      Model Number: MGNA3B/A
      Chip: Apple M1
      Total Number of Cores: 8 (4 performance and 4 efficiency)
      Memory: 8 GB
      System Firmware Version: 8422.100.650
      OS Loader Version: 8422.100.650

Software:

    System Software Overview:

      System Version: macOS 13.3 (22E252)
      Kernel Version: Darwin 22.4.0
      Time since boot: 9 days, 1 hour, 26 minutes

Graphics/Displays:

    Apple M1:

      Chipset Model: Apple M1
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 8
      Vendor: Apple (0x106b)
      Metal Support: Metal 3
      Displays:
        Color LCD:
          Display Type: Built-In Retina LCD
          Resolution: 2560 x 1600 Retina
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes
          Connection Type: Internal


Installed Packages:
    alabaster: 0.7.16
    appdirs: 1.4.4
    appnope: 0.1.4
    asttokens: 2.4.1
    Babel: 2.15.0
    beautifulsoup4: 4.12.3
    blockdiag: 3.0.0
    blosc2: 2.0.0
    build: 1.2.1
    certifi: 2023.11.17
    cftime: 1.6.4
    charset-normalizer: 3.3.2
    ChimeraX-AddCharge: 1.5.17
    ChimeraX-AddH: 2.2.6
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.5
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.12.7
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.1.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.57.1
    ChimeraX-AtomicLibrary: 14.0.6
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.4.6
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.12.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.7
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.4
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-Clipper: 0.23.1
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.6
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.8
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.3
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2.4
    ChimeraX-DiffPlot: 1.0
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.3
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ISOLDE: 1.8
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-Label: 1.1.10
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.1.6
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.3
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.7.1
    ChimeraX-MedicalToolbar: 1.0.3
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.14.1
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.17
    ChimeraX-ModelPanel: 1.5
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.13.5
    ChimeraX-PDB: 2.7.5
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.1
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.4.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.2
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.0.15
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.11.2
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.16.5
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.39.1
    ChimeraX-uniprot: 2.3
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.4.3
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.4
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.2
    contourpy: 1.2.1
    cxservices: 1.2.2
    cycler: 0.12.1
    Cython: 3.0.10
    debugpy: 1.8.1
    decorator: 5.1.1
    docutils: 0.20.1
    executing: 2.0.1
    filelock: 3.13.4
    fonttools: 4.53.0
    funcparserlib: 2.0.0a0
    glfw: 2.7.0
    grako: 3.16.5
    h5py: 3.11.0
    html2text: 2024.2.26
    idna: 3.7
    ihm: 1.0
    imagecodecs: 2024.1.1
    imagesize: 1.4.1
    ipykernel: 6.29.2
    ipython: 8.21.0
    ipywidgets: 8.1.3
    jedi: 0.19.1
    jinja2: 3.1.4
    jupyter-client: 8.6.0
    jupyter-core: 5.7.2
    jupyterlab-widgets: 3.0.11
    kiwisolver: 1.4.5
    line-profiler: 4.1.2
    lxml: 5.2.1
    lz4: 4.3.3
    MarkupSafe: 2.1.5
    matplotlib: 3.8.4
    matplotlib-inline: 0.1.7
    msgpack: 1.0.8
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.10.0
    numpy: 1.26.4
    openvr: 1.26.701
    packaging: 23.2
    ParmEd: 4.2.2
    parso: 0.8.4
    pep517: 0.13.1
    pexpect: 4.9.0
    pillow: 10.3.0
    pip: 24.0
    pkginfo: 1.10.0
    platformdirs: 4.2.2
    prompt-toolkit: 3.0.47
    psutil: 5.9.8
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    py-cpuinfo: 9.0.0
    pycollada: 0.8
    pydicom: 2.4.4
    pygments: 2.17.2
    pynmrstar: 3.3.4
    pynrrd: 1.0.0
    PyOpenGL: 3.1.7
    PyOpenGL-accelerate: 3.1.7
    pyopenxr: 1.0.3401
    pyparsing: 3.1.2
    pyproject-hooks: 1.1.0
    PyQt6-commercial: 6.6.1
    PyQt6-Qt6: 6.6.3
    PyQt6-sip: 13.6.0
    PyQt6-WebEngine-commercial: 6.6.0
    PyQt6-WebEngine-Qt6: 6.6.3
    python-dateutil: 2.9.0.post0
    pytz: 2024.1
    pyzmq: 26.0.3
    qtconsole: 5.5.1
    QtPy: 2.4.1
    RandomWords: 0.4.0
    requests: 2.31.0
    scipy: 1.13.0
    setuptools: 69.5.1
    setuptools-scm: 8.0.4
    sfftk-rw: 0.8.1
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.5
    sphinx: 7.2.6
    sphinx-autodoc-typehints: 2.0.1
    sphinxcontrib-applehelp: 1.0.8
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.6
    sphinxcontrib-htmlhelp: 2.0.5
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.7
    sphinxcontrib-serializinghtml: 1.1.10
    stack-data: 0.6.3
    superqt: 0.6.3
    tables: 3.8.0
    tcia-utils: 1.5.1
    tifffile: 2024.1.30
    tinyarray: 1.2.4
    tornado: 6.4.1
    traitlets: 5.14.2
    typing-extensions: 4.12.2
    tzdata: 2024.1
    urllib3: 2.2.1
    wcwidth: 0.2.13
    webcolors: 1.13
    wheel: 0.43.0
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.11