id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 15994 Crash in garbage collection chimerax-bug-report@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: macOS-12.5.1-x86_64-i386-64bit ChimeraX Version: 1.7.1 (2024-01-23 01:58:08 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Segmentation fault Thread 0x000000032363b000 (most recent call first): File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 324 in wait File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 622 in wait File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1392 in run File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x0000000322638000 (most recent call first): File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 579 in _handle_results File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x0000000321635000 (most recent call first): File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 531 in _handle_tasks File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x0000000320632000 (most recent call first): File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/selectors.py"", line 415 in select File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/connection.py"", line 930 in wait File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 502 in _wait_for_updates File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 522 in _handle_workers File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x000000031f62f000 (most recent call first): File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x000000031e62c000 (most recent call first): File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x000000031d629000 (most recent call first): File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x000000031c626000 (most recent call first): File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x000000031b623000 (most recent call first): File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x000000031a620000 (most recent call first): File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x000000031961d000 (most recent call first): File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x000000031861a000 (most recent call first): File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Current thread 0x0000000204a93600 (most recent call first): Garbage-collecting File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/core/_internal.py"", line 283 in data_as File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/molc.py"", line 333 in pointer File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/molc.py"", line 251 in set_cvec_pointer File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/molarray.py"", line 133 in __init__ File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/molarray.py"", line 1188 in __init__ File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/molobject.py"", line 2225 in process_changes File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/molobject.py"", line 2231 in changes File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/changes.py"", line 36 in check_for_changes File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/updateloop.py"", line 69 in draw_new_frame File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/updateloop.py"", line 150 in _redraw_timer_callback File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py"", line 275 in event_loop File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 918 in init File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1069 in File """", line 88 in _run_code File """", line 198 in _run_module_as_main Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtWebChannel, PyQt6.QtNetwork, PyQt6.QtWebEngineCore, PyQt6.QtPrintSupport, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.pdb_lib._load_libs, lxml._elementpath, lxml.etree, openmm._openmm, openmm.app.internal.compiled, chimerax.map._map, chimerax.surface._surface, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, PIL._imagingmath, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.pdb._pdbio (total: 57) {""app_name"":""ChimeraX"",""timestamp"":""2024-09-23 14:34:50.00 +0100"",""app_version"":""1.7.1"",""slice_uuid"":""194a3167-3db5-3029-8d22-1d742b826bb9"",""build_version"":""1.7.1.0"",""platform"":1,""bundleID"":""edu.ucsf.cgl.ChimeraX"",""share_with_app_devs"":1,""is_first_party"":0,""bug_type"":""309"",""os_version"":""macOS 12.5.1 (21G83)"",""incident_id"":""56B7911D-F7F0-4345-A61C-DEC98C737C0D"",""name"":""ChimeraX""} { ""uptime"" : 120000, ""procLaunch"" : ""2024-09-20 12:17:49.7194 +0100"", ""procRole"" : ""Foreground"", ""version"" : 2, ""userID"" : 501, ""deployVersion"" : 210, ""modelCode"" : ""Mac14,7"", ""procStartAbsTime"" : 2370486740012, ""coalitionID"" : 2424, ""osVersion"" : { ""train"" : ""macOS 12.5.1"", ""build"" : ""21G83"", ""releaseType"" : ""User"" }, ""captureTime"" : ""2024-09-23 14:34:46.9388 +0100"", ""incident"" : ""56B7911D-F7F0-4345-A61C-DEC98C737C0D"", ""bug_type"" : ""309"", ""pid"" : 20611, ""procExitAbsTime"" : 3082181366416, ""translated"" : true, ""cpuType"" : ""X86-64"", ""procName"" : ""ChimeraX"", ""procPath"" : ""\/Applications\/ChimeraX-1.7.1.app\/Contents\/MacOS\/ChimeraX"", ""bundleInfo"" : {""CFBundleShortVersionString"":""1.7.1"",""CFBundleVersion"":""1.7.1.0"",""CFBundleIdentifier"":""edu.ucsf.cgl.ChimeraX""}, ""storeInfo"" : {""deviceIdentifierForVendor"":""5A474F56-37F1-5EAE-AE4A-716C4B8E9ECA"",""thirdParty"":true}, ""parentProc"" : ""launchd"", ""parentPid"" : 1, ""coalitionName"" : ""edu.ucsf.cgl.ChimeraX"", ""crashReporterKey"" : ""05C48EED-39CC-5B24-BB62-5216644C543A"", ""wakeTime"" : 813, ""sleepWakeUUID"" : ""6CE54190-846A-4F0C-8ACB-0019D73F9765"", ""sip"" : ""enabled"", ""vmRegionInfo"" : ""0xa9 is not in any region. Bytes before following region: 140722790416215\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n mapped file 7ffc93ef4000-7ffc94530000 [ 6384K] r-x\/r-x SM=COW ...t_id=de16d401"", ""isCorpse"" : 1, ""exception"" : {""codes"":""0x0000000000000001, 0x00000000000000a9"",""rawCodes"":[1,169],""type"":""EXC_BAD_ACCESS"",""signal"":""SIGSEGV"",""subtype"":""KERN_INVALID_ADDRESS at 0x00000000000000a9""}, ""ktriageinfo"" : ""VM - Compressor failed a blocking pager_get\n"", ""vmregioninfo"" : ""0xa9 is not in any region. Bytes before following region: 140722790416215\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n mapped file 7ffc93ef4000-7ffc94530000 [ 6384K] r-x\/r-x SM=COW ...t_id=de16d401"", ""extMods"" : {""caller"":{""thread_create"":0,""thread_set_state"":0,""task_for_pid"":0},""system"":{""thread_create"":0,""thread_set_state"":0,""task_for_pid"":0},""targeted"":{""thread_create"":0,""thread_set_state"":0,""task_for_pid"":0},""warnings"":0}, ""faultingThread"" : 0, ""threads"" : [{""triggered"":true,""id"":923312,""threadState"":{""flavor"":""x86_THREAD_STATE"",""rbp"":{""value"":14757395258967641293},""r12"":{""value"":259},""rosetta"":{""tmp2"":{""value"":140703461044228},""tmp1"":{""value"":140705881991444},""tmp0"":{""value"":18446744073709551615}},""rbx"":{""value"":8668132864,""symbolLocation"":0,""symbol"":""_main_thread""},""r8"":{""value"":11},""r15"":{""value"":22},""r10"":{""value"":8668132864,""symbolLocation"":0,""symbol"":""_main_thread""},""rdx"":{""value"":0},""rdi"":{""value"":4531596400,""symbolLocation"":0,""symbol"":""faulthandler_handlers""},""r9"":{""value"":14757395258967641293},""r13"":{""value"":4513148929},""rflags"":{""value"":643},""rax"":{""value"":0},""rsp"":{""value"":2},""r11"":{""value"":340},""rcx"":{""value"":0},""r14"":{""value"":11},""rsi"":{""value"":4531225629}},""name"":""CrBrowserMain"",""queue"":""com.apple.main-thread"",""frames"":[{""imageOffset"":140705881991488,""imageIndex"":0},{""imageOffset"":32782,""symbol"":""__pthread_kill"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":25087,""symbol"":""pthread_kill"",""symbolLocation"":263,""imageIndex"":2},{""imageOffset"":279256,""symbol"":""raise"",""symbolLocation"":26,""imageIndex"":3},{""imageOffset"":2590164,""symbol"":""faulthandler_fatal_error"",""symbolLocation"":388,""imageIndex"":4},{""imageOffset"":15869,""symbol"":""_sigtramp"",""symbolLocation"":29,""imageIndex"":5},{""imageOffset"":0,""imageIndex"":0},{""imageOffset"":47061,""symbol"":""nanov2_madvise_block"",""symbolLocation"":141,""imageIndex"":6},{""imageOffset"":4513148928,""imageIndex"":0},{""imageOffset"":13107521136,""imageIndex"":0}]},{""id"":923320,""name"":""com.apple.rosetta.exceptionserver"",""frames"":[{""imageOffset"":18756,""imageIndex"":7},{""imageOffset"":74720,""imageIndex"":7},{""imageOffset"":81496,""imageIndex"":7}]},{""id"":923742,""name"":""ThreadPoolServiceThread"",""frames"":[{""imageOffset"":140705881991488,""imageIndex"":0},{""imageOffset"":43210,""symbol"":""kevent64"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":66456106,""imageIndex"":8},{""imageOffset"":66455847,""imageIndex"":8},{""imageOffset"":65919580,""imageIndex"":8},{""imageOffset"":65624472,""imageIndex"":8},{""imageOffset"":66059960,""imageIndex"":8},{""imageOffset"":65958573,""imageIndex"":8},{""imageOffset"":66060362,""imageIndex"":8},{""imageOffset"":66222344,""imageIndex"":8},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":923744,""name"":""ThreadPoolBackgroundWorker"",""frames"":[{""imageOffset"":140705881991488,""imageIndex"":0},{""imageOffset"":6522,""symbol"":""mach_msg_trap"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":7400,""symbol"":""mach_msg"",""symbolLocation"":56,""imageIndex"":1},{""imageOffset"":66252326,""imageIndex"":8},{""imageOffset"":66009023,""imageIndex"":8},{""imageOffset"":66011756,""imageIndex"":8},{""imageOffset"":66010589,""imageIndex"":8},{""imageOffset"":66222344,""imageIndex"":8},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":923745,""name"":""Chrome_IOThread"",""frames"":[{""imageOffset"":140705881991488,""imageIndex"":0},{""imageOffset"":43210,""symbol"":""kevent64"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":66456106,""imageIndex"":8},{""imageOffset"":66455847,""imageIndex"":8},{""imageOffset"":65919580,""imageIndex"":8},{""imageOffset"":65624472,""imageIndex"":8},{""imageOffset"":66059960,""imageIndex"":8},{""imageOffset"":48386978,""imageIndex"":8},{""imageOffset"":66060362,""imageIndex"":8},{""imageOffset"":66222344,""imageIndex"":8},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":923746,""name"":""NetworkConfigWatcher"",""frames"":[{""imageOffset"":140705881991488,""imageIndex"":0},{""imageOffset"":6522,""symbol"":""mach_msg_trap"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":7400,""symbol"":""mach_msg"",""symbolLocation"":56,""imageIndex"":1},{""imageOffset"":66252326,""imageIndex"":8},{""imageOffset"":66251759,""imageIndex"":8},{""imageOffset"":65421769,""imageIndex"":8},{""imageOffset"":65919580,""imageIndex"":8},{""imageOffset"":65624472,""imageIndex"":8},{""imageOffset"":66059960,""imageIndex"":8},{""imageOffset"":66060362,""imageIndex"":8},{""imageOffset"":66222344,""imageIndex"":8},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":923750,""name"":""CompositorTileWorker1"",""frames"":[{""imageOffset"":140705881991488,""imageIndex"":0},{""imageOffset"":17386,""symbol"":""__psynch_cvwait"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":27247,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1249,""imageIndex"":2},{""imageOffset"":66219291,""imageIndex"":8},{""imageOffset"":100616493,""imageIndex"":8},{""imageOffset"":66222344,""imageIndex"":8},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":923751,""name"":""Chrome_InProcGpuThread"",""frames"":[{""imageOffset"":140705881991488,""imageIndex"":0},{""imageOffset"":6522,""symbol"":""mach_msg_trap"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":7400,""symbol"":""mach_msg"",""symbolLocation"":56,""imageIndex"":1},{""imageOffset"":66252326,""imageIndex"":8},{""imageOffset"":65421672,""imageIndex"":8},{""imageOffset"":65919580,""imageIndex"":8},{""imageOffset"":65624472,""imageIndex"":8},{""imageOffset"":66059960,""imageIndex"":8},{""imageOffset"":66060362,""imageIndex"":8},{""imageOffset"":66222344,""imageIndex"":8},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":923752,""name"":""Chrome_ChildIOThread"",""frames"":[{""imageOffset"":140705881991488,""imageIndex"":0},{""imageOffset"":43210,""symbol"":""kevent64"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":66456106,""imageIndex"":8},{""imageOffset"":66455847,""imageIndex"":8},{""imageOffset"":65919580,""imageIndex"":8},{""imageOffset"":65624472,""imageIndex"":8},{""imageOffset"":66059960,""imageIndex"":8},{""imageOffset"":66060362,""imageIndex"":8},{""imageOffset"":66222344,""imageIndex"":8},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":923753,""name"":""NetworkConfigWatcher"",""frames"":[{""imageOffset"":140705881991488,""imageIndex"":0},{""imageOffset"":6522,""symbol"":""mach_msg_trap"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":7400,""symbol"":""mach_msg"",""symbolLocation"":56,""imageIndex"":1},{""imageOffset"":66252326,""imageIndex"":8},{""imageOffset"":66251759,""imageIndex"":8},{""imageOffset"":65421769,""imageIndex"":8},{""imageOffset"":65919580,""imageIndex"":8},{""imageOffset"":65624472,""imageIndex"":8},{""imageOffset"":66059960,""imageIndex"":8},{""imageOffset"":66060362,""imageIndex"":8},{""imageOffset"":66222344,""imageIndex"":8},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":923754,""name"":""VizCompositorThread"",""frames"":[{""imageOffset"":140705881991488,""imageIndex"":0},{""imageOffset"":6522,""symbol"":""mach_msg_trap"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":7400,""symbol"":""mach_msg"",""symbolLocation"":56,""imageIndex"":1},{""imageOffset"":66252326,""imageIndex"":8},{""imageOffset"":66251759,""imageIndex"":8},{""imageOffset"":65421769,""imageIndex"":8},{""imageOffset"":65919580,""imageIndex"":8},{""imageOffset"":65624472,""imageIndex"":8},{""imageOffset"":66059960,""imageIndex"":8},{""imageOffset"":66060362,""imageIndex"":8},{""imageOffset"":66222344,""imageIndex"":8},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":923763,""name"":""NetworkService"",""frames"":[{""imageOffset"":140705881991488,""imageIndex"":0},{""imageOffset"":43210,""symbol"":""kevent64"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":66456106,""imageIndex"":8},{""imageOffset"":66455847,""imageIndex"":8},{""imageOffset"":65919580,""imageIndex"":8},{""imageOffset"":65624472,""imageIndex"":8},{""imageOffset"":66059960,""imageIndex"":8},{""imageOffset"":66060362,""imageIndex"":8},{""imageOffset"":66222344,""imageIndex"":8},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":923764,""name"":""NetworkConfigWatcher"",""frames"":[{""imageOffset"":140705881991488,""imageIndex"":0},{""imageOffset"":6522,""symbol"":""mach_msg_trap"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":7400,""symbol"":""mach_msg"",""symbolLocation"":56,""imageIndex"":1},{""imageOffset"":66252326,""imageIndex"":8},{""imageOffset"":66251759,""imageIndex"":8},{""imageOffset"":65421769,""imageIndex"":8},{""imageOffset"":65919580,""imageIndex"":8},{""imageOffset"":65624472,""imageIndex"":8},{""imageOffset"":66059960,""imageIndex"":8},{""imageOffset"":66060362,""imageIndex"":8},{""imageOffset"":66222344,""imageIndex"":8},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":923765,""name"":""ThreadPoolSingleThreadForegroundBlocking0"",""frames"":[{""imageOffset"":140705881991488,""imageIndex"":0},{""imageOffset"":6522,""symbol"":""mach_msg_trap"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":7400,""symbol"":""mach_msg"",""symbolLocation"":56,""imageIndex"":1},{""imageOffset"":66252326,""imageIndex"":8},{""imageOffset"":66009023,""imageIndex"":8},{""imageOffset"":66011756,""imageIndex"":8},{""imageOffset"":66010829,""imageIndex"":8},{""imageOffset"":66222344,""imageIndex"":8},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":923790,""name"":""NetworkConfigWatcher"",""frames"":[{""imageOffset"":140705881991488,""imageIndex"":0},{""imageOffset"":6522,""symbol"":""mach_msg_trap"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":7400,""symbol"":""mach_msg"",""symbolLocation"":56,""imageIndex"":1},{""imageOffset"":66252326,""imageIndex"":8},{""imageOffset"":66251759,""imageIndex"":8},{""imageOffset"":65421769,""imageIndex"":8},{""imageOffset"":65919580,""imageIndex"":8},{""imageOffset"":65624472,""imageIndex"":8},{""imageOffset"":66059960,""imageIndex"":8},{""imageOffset"":66060362,""imageIndex"":8},{""imageOffset"":66222344,""imageIndex"":8},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":923800,""frames"":[{""imageOffset"":140705881991488,""imageIndex"":0},{""imageOffset"":17386,""symbol"":""__psynch_cvwait"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":27247,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1249,""imageIndex"":2},{""imageOffset"":2482802,""symbol"":""PyThread_acquire_lock_timed"",""symbolLocation"":434,""imageIndex"":4},{""imageOffset"":13491,""symbol"":""_queue_SimpleQueue_get_impl"",""symbolLocation"":211,""imageIndex"":9},{""imageOffset"":12660,""symbol"":""_queue_SimpleQueue_get"",""symbolLocation"":196,""imageIndex"":9},{""imageOffset"":1099109,""symbol"":""cfunction_vectorcall_FASTCALL_KEYWORDS_METHOD"",""symbolLocation"":101,""imageIndex"":4},{""imageOffset"":1917679,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":60207,""imageIndex"":4},{""imageOffset"":1942736,""symbol"":""_PyEval_Vector"",""symbolLocation"":128,""imageIndex"":4},{""imageOffset"":1930570,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":73098,""imageIndex"":4},{""imageOffset"":1942736,""symbol"":""_PyEval_Vector"",""symbolLocation"":128,""imageIndex"":4},{""imageOffset"":698390,""symbol"":""method_vectorcall"",""symbolLocation"":454,""imageIndex"":4},{""imageOffset"":3025702,""symbol"":""thread_run"",""symbolLocation"":230,""imageIndex"":4},{""imageOffset"":2481828,""symbol"":""pythread_wrapper"",""symbolLocation"":36,""imageIndex"":4},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":923801,""frames"":[{""imageOffset"":140705881991488,""imageIndex"":0},{""imageOffset"":17386,""symbol"":""__psynch_cvwait"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":27247,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1249,""imageIndex"":2},{""imageOffset"":2482802,""symbol"":""PyThread_acquire_lock_timed"",""symbolLocation"":434,""imageIndex"":4},{""imageOffset"":13491,""symbol"":""_queue_SimpleQueue_get_impl"",""symbolLocation"":211,""imageIndex"":9},{""imageOffset"":12660,""symbol"":""_queue_SimpleQueue_get"",""symbolLocation"":196,""imageIndex"":9},{""imageOffset"":1099109,""symbol"":""cfunction_vectorcall_FASTCALL_KEYWORDS_METHOD"",""symbolLocation"":101,""imageIndex"":4},{""imageOffset"":1917679,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":60207,""imageIndex"":4},{""imageOffset"":1942736,""symbol"":""_PyEval_Vector"",""symbolLocation"":128,""imageIndex"":4},{""imageOffset"":1930570,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":73098,""imageIndex"":4},{""imageOffset"":1942736,""symbol"":""_PyEval_Vector"",""symbolLocation"":128,""imageIndex"":4},{""imageOffset"":698390,""symbol"":""method_vectorcall"",""symbolLocation"":454,""imageIndex"":4},{""imageOffset"":3025702,""symbol"":""thread_run"",""symbolLocation"":230,""imageIndex"":4},{""imageOffset"":2481828,""symbol"":""pythread_wrapper"",""symbolLocation"":36,""imageIndex"":4},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":923802,""frames"":[{""imageOffset"":140705881991488,""imageIndex"":0},{""imageOffset"":17386,""symbol"":""__psynch_cvwait"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":27247,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1249,""imageIndex"":2},{""imageOffset"":2482802,""symbol"":""PyThread_acquire_lock_timed"",""symbolLocation"":434,""imageIndex"":4},{""imageOffset"":13491,""symbol"":""_queue_SimpleQueue_get_impl"",""symbolLocation"":211,""imageIndex"":9},{""imageOffset"":12660,""symbol"":""_queue_SimpleQueue_get"",""symbolLocation"":196,""imageIndex"":9},{""imageOffset"":1099109,""symbol"":""cfunction_vectorcall_FASTCALL_KEYWORDS_METHOD"",""symbolLocation"":101,""imageIndex"":4},{""imageOffset"":1917679,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":60207,""imageIndex"":4},{""imageOffset"":1942736,""symbol"":""_PyEval_Vector"",""symbolLocation"":128,""imageIndex"":4},{""imageOffset"":1930570,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":73098,""imageIndex"":4},{""imageOffset"":1942736,""symbol"":""_PyEval_Vector"",""symbolLocation"":128,""imageIndex"":4},{""imageOffset"":698390,""symbol"":""method_vectorcall"",""symbolLocation"":454,""imageIndex"":4},{""imageOffset"":3025702,""symbol"":""thread_run"",""symbolLocation"":230,""imageIndex"":4},{""imageOffset"":2481828,""symbol"":""pythread_wrapper"",""symbolLocation"":36,""imageIndex"":4},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":923803,""frames"":[{""imageOffset"":140705881991488,""imageIndex"":0},{""imageOffset"":17386,""symbol"":""__psynch_cvwait"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":27247,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1249,""imageIndex"":2},{""imageOffset"":2482802,""symbol"":""PyThread_acquire_lock_timed"",""symbolLocation"":434,""imageIndex"":4},{""imageOffset"":13491,""symbol"":""_queue_SimpleQueue_get_impl"",""symbolLocation"":211,""imageIndex"":9},{""imageOffset"":12660,""symbol"":""_queue_SimpleQueue_get"",""symbolLocation"":196,""imageIndex"":9},{""imageOffset"":1099109,""symbol"":""cfunction_vectorcall_FASTCALL_KEYWORDS_METHOD"",""symbolLocation"":101,""imageIndex"":4},{""imageOffset"":1917679,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":60207,""imageIndex"":4},{""imageOffset"":1942736,""symbol"":""_PyEval_Vector"",""symbolLocation"":128,""imageIndex"":4},{""imageOffset"":1930570,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":73098,""imageIndex"":4},{""imageOffset"":1942736,""symbol"":""_PyEval_Vector"",""symbolLocation"":128,""imageIndex"":4},{""imageOffset"":698390,""symbol"":""method_vectorcall"",""symbolLocation"":454,""imageIndex"":4},{""imageOffset"":3025702,""symbol"":""thread_run"",""symbolLocation"":230,""imageIndex"":4},{""imageOffset"":2481828,""symbol"":""pythread_wrapper"",""symbolLocation"":36,""imageIndex"":4},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":923804,""frames"":[{""imageOffset"":140705881991488,""imageIndex"":0},{""imageOffset"":17386,""symbol"":""__psynch_cvwait"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":27247,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1249,""imageIndex"":2},{""imageOffset"":2482802,""symbol"":""PyThread_acquire_lock_timed"",""symbolLocation"":434,""imageIndex"":4},{""imageOffset"":13491,""symbol"":""_queue_SimpleQueue_get_impl"",""symbolLocation"":211,""imageIndex"":9},{""imageOffset"":12660,""symbol"":""_queue_SimpleQueue_get"",""symbolLocation"":196,""imageIndex"":9},{""imageOffset"":1099109,""symbol"":""cfunction_vectorcall_FASTCALL_KEYWORDS_METHOD"",""symbolLocation"":101,""imageIndex"":4},{""imageOffset"":1917679,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":60207,""imageIndex"":4},{""imageOffset"":1942736,""symbol"":""_PyEval_Vector"",""symbolLocation"":128,""imageIndex"":4},{""imageOffset"":1930570,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":73098,""imageIndex"":4},{""imageOffset"":1942736,""symbol"":""_PyEval_Vector"",""symbolLocation"":128,""imageIndex"":4},{""imageOffset"":698390,""symbol"":""method_vectorcall"",""symbolLocation"":454,""imageIndex"":4},{""imageOffset"":3025702,""symbol"":""thread_run"",""symbolLocation"":230,""imageIndex"":4},{""imageOffset"":2481828,""symbol"":""pythread_wrapper"",""symbolLocation"":36,""imageIndex"":4},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":923805,""frames"":[{""imageOffset"":140705881991488,""imageIndex"":0},{""imageOffset"":17386,""symbol"":""__psynch_cvwait"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":27247,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1249,""imageIndex"":2},{""imageOffset"":2482802,""symbol"":""PyThread_acquire_lock_timed"",""symbolLocation"":434,""imageIndex"":4},{""imageOffset"":13491,""symbol"":""_queue_SimpleQueue_get_impl"",""symbolLocation"":211,""imageIndex"":9},{""imageOffset"":12660,""symbol"":""_queue_SimpleQueue_get"",""symbolLocation"":196,""imageIndex"":9},{""imageOffset"":1099109,""symbol"":""cfunction_vectorcall_FASTCALL_KEYWORDS_METHOD"",""symbolLocation"":101,""imageIndex"":4},{""imageOffset"":1917679,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":60207,""imageIndex"":4},{""imageOffset"":1942736,""symbol"":""_PyEval_Vector"",""symbolLocation"":128,""imageIndex"":4},{""imageOffset"":1930570,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":73098,""imageIndex"":4},{""imageOffset"":1942736,""symbol"":""_PyEval_Vector"",""symbolLocation"":128,""imageIndex"":4},{""imageOffset"":698390,""symbol"":""method_vectorcall"",""symbolLocation"":454,""imageIndex"":4},{""imageOffset"":3025702,""symbol"":""thread_run"",""symbolLocation"":230,""imageIndex"":4},{""imageOffset"":2481828,""symbol"":""pythread_wrapper"",""symbolLocation"":36,""imageIndex"":4},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":923806,""frames"":[{""imageOffset"":140705881991488,""imageIndex"":0},{""imageOffset"":17386,""symbol"":""__psynch_cvwait"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":27247,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1249,""imageIndex"":2},{""imageOffset"":2482802,""symbol"":""PyThread_acquire_lock_timed"",""symbolLocation"":434,""imageIndex"":4},{""imageOffset"":13491,""symbol"":""_queue_SimpleQueue_get_impl"",""symbolLocation"":211,""imageIndex"":9},{""imageOffset"":12660,""symbol"":""_queue_SimpleQueue_get"",""symbolLocation"":196,""imageIndex"":9},{""imageOffset"":1099109,""symbol"":""cfunction_vectorcall_FASTCALL_KEYWORDS_METHOD"",""symbolLocation"":101,""imageIndex"":4},{""imageOffset"":1917679,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":60207,""imageIndex"":4},{""imageOffset"":1942736,""symbol"":""_PyEval_Vector"",""symbolLocation"":128,""imageIndex"":4},{""imageOffset"":1930570,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":73098,""imageIndex"":4},{""imageOffset"":1942736,""symbol"":""_PyEval_Vector"",""symbolLocation"":128,""imageIndex"":4},{""imageOffset"":698390,""symbol"":""method_vectorcall"",""symbolLocation"":454,""imageIndex"":4},{""imageOffset"":3025702,""symbol"":""thread_run"",""symbolLocation"":230,""imageIndex"":4},{""imageOffset"":2481828,""symbol"":""pythread_wrapper"",""symbolLocation"":36,""imageIndex"":4},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":923807,""frames"":[{""imageOffset"":140705881991488,""imageIndex"":0},{""imageOffset"":17386,""symbol"":""__psynch_cvwait"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":27247,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1249,""imageIndex"":2},{""imageOffset"":2482802,""symbol"":""PyThread_acquire_lock_timed"",""symbolLocation"":434,""imageIndex"":4},{""imageOffset"":13491,""symbol"":""_queue_SimpleQueue_get_impl"",""symbolLocation"":211,""imageIndex"":9},{""imageOffset"":12660,""symbol"":""_queue_SimpleQueue_get"",""symbolLocation"":196,""imageIndex"":9},{""imageOffset"":1099109,""symbol"":""cfunction_vectorcall_FASTCALL_KEYWORDS_METHOD"",""symbolLocation"":101,""imageIndex"":4},{""imageOffset"":1917679,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":60207,""imageIndex"":4},{""imageOffset"":1942736,""symbol"":""_PyEval_Vector"",""symbolLocation"":128,""imageIndex"":4},{""imageOffset"":1930570,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":73098,""imageIndex"":4},{""imageOffset"":1942736,""symbol"":""_PyEval_Vector"",""symbolLocation"":128,""imageIndex"":4},{""imageOffset"":698390,""symbol"":""method_vectorcall"",""symbolLocation"":454,""imageIndex"":4},{""imageOffset"":3025702,""symbol"":""thread_run"",""symbolLocation"":230,""imageIndex"":4},{""imageOffset"":2481828,""symbol"":""pythread_wrapper"",""symbolLocation"":36,""imageIndex"":4},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":923808,""frames"":[{""imageOffset"":140705881991488,""imageIndex"":0},{""imageOffset"":32938,""symbol"":""poll"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":22181,""symbol"":""select_poll_poll"",""symbolLocation"":149,""imageIndex"":10},{""imageOffset"":753176,""symbol"":""method_vectorcall_FASTCALL"",""symbolLocation"":104,""imageIndex"":4},{""imageOffset"":1917679,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":60207,""imageIndex"":4},{""imageOffset"":1942736,""symbol"":""_PyEval_Vector"",""symbolLocation"":128,""imageIndex"":4},{""imageOffset"":698143,""symbol"":""method_vectorcall"",""symbolLocation"":207,""imageIndex"":4},{""imageOffset"":1930570,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":73098,""imageIndex"":4},{""imageOffset"":1942736,""symbol"":""_PyEval_Vector"",""symbolLocation"":128,""imageIndex"":4},{""imageOffset"":698390,""symbol"":""method_vectorcall"",""symbolLocation"":454,""imageIndex"":4},{""imageOffset"":3025702,""symbol"":""thread_run"",""symbolLocation"":230,""imageIndex"":4},{""imageOffset"":2481828,""symbol"":""pythread_wrapper"",""symbolLocation"":36,""imageIndex"":4},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":923809,""frames"":[{""imageOffset"":140705881991488,""imageIndex"":0},{""imageOffset"":17386,""symbol"":""__psynch_cvwait"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":27247,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1249,""imageIndex"":2},{""imageOffset"":2482802,""symbol"":""PyThread_acquire_lock_timed"",""symbolLocation"":434,""imageIndex"":4},{""imageOffset"":13491,""symbol"":""_queue_SimpleQueue_get_impl"",""symbolLocation"":211,""imageIndex"":9},{""imageOffset"":12660,""symbol"":""_queue_SimpleQueue_get"",""symbolLocation"":196,""imageIndex"":9},{""imageOffset"":1099109,""symbol"":""cfunction_vectorcall_FASTCALL_KEYWORDS_METHOD"",""symbolLocation"":101,""imageIndex"":4},{""imageOffset"":872623,""symbol"":""calliter_iternext"",""symbolLocation"":79,""imageIndex"":4},{""imageOffset"":1910669,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":53197,""imageIndex"":4},{""imageOffset"":1942736,""symbol"":""_PyEval_Vector"",""symbolLocation"":128,""imageIndex"":4},{""imageOffset"":1930570,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":73098,""imageIndex"":4},{""imageOffset"":1942736,""symbol"":""_PyEval_Vector"",""symbolLocation"":128,""imageIndex"":4},{""imageOffset"":698390,""symbol"":""method_vectorcall"",""symbolLocation"":454,""imageIndex"":4},{""imageOffset"":3025702,""symbol"":""thread_run"",""symbolLocation"":230,""imageIndex"":4},{""imageOffset"":2481828,""symbol"":""pythread_wrapper"",""symbolLocation"":36,""imageIndex"":4},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":923810,""frames"":[{""imageOffset"":140705881991488,""imageIndex"":0},{""imageOffset"":17386,""symbol"":""__psynch_cvwait"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":27247,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1249,""imageIndex"":2},{""imageOffset"":2482802,""symbol"":""PyThread_acquire_lock_timed"",""symbolLocation"":434,""imageIndex"":4},{""imageOffset"":13491,""symbol"":""_queue_SimpleQueue_get_impl"",""symbolLocation"":211,""imageIndex"":9},{""imageOffset"":12660,""symbol"":""_queue_SimpleQueue_get"",""symbolLocation"":196,""imageIndex"":9},{""imageOffset"":1099109,""symbol"":""cfunction_vectorcall_FASTCALL_KEYWORDS_METHOD"",""symbolLocation"":101,""imageIndex"":4},{""imageOffset"":1917679,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":60207,""imageIndex"":4},{""imageOffset"":1942736,""symbol"":""_PyEval_Vector"",""symbolLocation"":128,""imageIndex"":4},{""imageOffset"":1930570,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":73098,""imageIndex"":4},{""imageOffset"":1942736,""symbol"":""_PyEval_Vector"",""symbolLocation"":128,""imageIndex"":4},{""imageOffset"":698390,""symbol"":""method_vectorcall"",""symbolLocation"":454,""imageIndex"":4},{""imageOffset"":3025702,""symbol"":""thread_run"",""symbolLocation"":230,""imageIndex"":4},{""imageOffset"":2481828,""symbol"":""pythread_wrapper"",""symbolLocation"":36,""imageIndex"":4},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":923853,""name"":""com.apple.NSEventThread"",""frames"":[{""imageOffset"":140705881991488,""imageIndex"":0},{""imageOffset"":6522,""symbol"":""mach_msg_trap"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":7400,""symbol"":""mach_msg"",""symbolLocation"":56,""imageIndex"":1},{""imageOffset"":521568,""symbol"":""__CFRunLoopServiceMachPort"",""symbolLocation"":319,""imageIndex"":11},{""imageOffset"":515056,""symbol"":""__CFRunLoopRun"",""symbolLocation"":1276,""imageIndex"":11},{""imageOffset"":512052,""symbol"":""CFRunLoopRunSpecific"",""symbolLocation"":562,""imageIndex"":11},{""imageOffset"":1755598,""symbol"":""_NSEventThread"",""symbolLocation"":132,""imageIndex"":12},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":923929,""name"":""MemoryInfra"",""frames"":[{""imageOffset"":140705881991488,""imageIndex"":0},{""imageOffset"":6522,""symbol"":""mach_msg_trap"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":7400,""symbol"":""mach_msg"",""symbolLocation"":56,""imageIndex"":1},{""imageOffset"":66252326,""imageIndex"":8},{""imageOffset"":66251759,""imageIndex"":8},{""imageOffset"":65421769,""imageIndex"":8},{""imageOffset"":65919580,""imageIndex"":8},{""imageOffset"":65624472,""imageIndex"":8},{""imageOffset"":66059960,""imageIndex"":8},{""imageOffset"":66060362,""imageIndex"":8},{""imageOffset"":66222344,""imageIndex"":8},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":923930,""name"":""ThreadPoolSingleThreadSharedBackgroundBlocking1"",""frames"":[{""imageOffset"":140705881991488,""imageIndex"":0},{""imageOffset"":6522,""symbol"":""mach_msg_trap"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":7400,""symbol"":""mach_msg"",""symbolLocation"":56,""imageIndex"":1},{""imageOffset"":66252326,""imageIndex"":8},{""imageOffset"":66009023,""imageIndex"":8},{""imageOffset"":66011034,""imageIndex"":8},{""imageOffset"":66010637,""imageIndex"":8},{""imageOffset"":66222344,""imageIndex"":8},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":924426,""frames"":[{""imageOffset"":140705881991488,""imageIndex"":0},{""imageOffset"":6786,""symbol"":""swtch_pri"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":15407,""symbol"":""cthread_yield"",""symbolLocation"":11,""imageIndex"":2},{""imageOffset"":3466795,""symbol"":""blas_thread_server"",""symbolLocation"":123,""imageIndex"":13},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":924427,""frames"":[{""imageOffset"":140705881991488,""imageIndex"":0},{""imageOffset"":6786,""symbol"":""swtch_pri"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":15407,""symbol"":""cthread_yield"",""symbolLocation"":11,""imageIndex"":2},{""imageOffset"":3466795,""symbol"":""blas_thread_server"",""symbolLocation"":123,""imageIndex"":13},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":924428,""frames"":[{""imageOffset"":140705881991488,""imageIndex"":0},{""imageOffset"":17386,""symbol"":""__psynch_cvwait"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":27247,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1249,""imageIndex"":2},{""imageOffset"":3466879,""symbol"":""blas_thread_server"",""symbolLocation"":207,""imageIndex"":13},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":924429,""frames"":[{""imageOffset"":140705881991488,""imageIndex"":0},{""imageOffset"":17386,""symbol"":""__psynch_cvwait"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":27247,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1249,""imageIndex"":2},{""imageOffset"":3466879,""symbol"":""blas_thread_server"",""symbolLocation"":207,""imageIndex"":13},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":924430,""frames"":[{""imageOffset"":140705881991488,""imageIndex"":0},{""imageOffset"":17386,""symbol"":""__psynch_cvwait"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":27247,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1249,""imageIndex"":2},{""imageOffset"":3466879,""symbol"":""blas_thread_server"",""symbolLocation"":207,""imageIndex"":13},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":924431,""frames"":[{""imageOffset"":140705881991488,""imageIndex"":0},{""imageOffset"":17386,""symbol"":""__psynch_cvwait"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":27247,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1249,""imageIndex"":2},{""imageOffset"":3466879,""symbol"":""blas_thread_server"",""symbolLocation"":207,""imageIndex"":13},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":924432,""frames"":[{""imageOffset"":140705881991488,""imageIndex"":0},{""imageOffset"":17386,""symbol"":""__psynch_cvwait"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":27247,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1249,""imageIndex"":2},{""imageOffset"":3466879,""symbol"":""blas_thread_server"",""symbolLocation"":207,""imageIndex"":13},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":1217022,""name"":""ThreadPoolForegroundWorker"",""frames"":[{""imageOffset"":140705881991488,""imageIndex"":0},{""imageOffset"":6522,""symbol"":""mach_msg_trap"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":7400,""symbol"":""mach_msg"",""symbolLocation"":56,""imageIndex"":1},{""imageOffset"":66252326,""imageIndex"":8},{""imageOffset"":66009023,""imageIndex"":8},{""imageOffset"":66011756,""imageIndex"":8},{""imageOffset"":66010733,""imageIndex"":8},{""imageOffset"":66222344,""imageIndex"":8},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":1218134,""frames"":[{""imageOffset"":141332,""imageIndex"":7}]},{""id"":1218230,""frames"":[{""imageOffset"":141332,""imageIndex"":7}]},{""id"":1218231,""frames"":[{""imageOffset"":141332,""imageIndex"":7}]},{""id"":1218232,""frames"":[{""imageOffset"":141332,""imageIndex"":7}]},{""id"":1218235,""frames"":[{""imageOffset"":141332,""imageIndex"":7}]},{""id"":1218247,""frames"":[{""imageOffset"":141332,""imageIndex"":7}]},{""id"":1218259,""frames"":[{""imageOffset"":141332,""imageIndex"":7}]},{""id"":1218300,""name"":""ThreadPoolBackgroundWorker"",""frames"":[{""imageOffset"":140705881991488,""imageIndex"":0},{""imageOffset"":6522,""symbol"":""mach_msg_trap"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":7400,""symbol"":""mach_msg"",""symbolLocation"":56,""imageIndex"":1},{""imageOffset"":66252326,""imageIndex"":8},{""imageOffset"":66009023,""imageIndex"":8},{""imageOffset"":66011756,""imageIndex"":8},{""imageOffset"":66010589,""imageIndex"":8},{""imageOffset"":66222344,""imageIndex"":8},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":1218314,""frames"":[{""imageOffset"":141332,""imageIndex"":7}]},{""id"":1218415,""frames"":[{""imageOffset"":141332,""imageIndex"":7}]},{""id"":1218416,""frames"":[{""imageOffset"":141332,""imageIndex"":7}]},{""id"":1219010,""name"":""ThreadPoolForegroundWorker"",""frames"":[{""imageOffset"":140705881991488,""imageIndex"":0},{""imageOffset"":6522,""symbol"":""mach_msg_trap"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":7400,""symbol"":""mach_msg"",""symbolLocation"":56,""imageIndex"":1},{""imageOffset"":66252326,""imageIndex"":8},{""imageOffset"":66009023,""imageIndex"":8},{""imageOffset"":66011034,""imageIndex"":8},{""imageOffset"":66010733,""imageIndex"":8},{""imageOffset"":66222344,""imageIndex"":8},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":1219014,""frames"":[{""imageOffset"":141332,""imageIndex"":7}]},{""id"":1219033,""frames"":[{""imageOffset"":140705881991488,""imageIndex"":0},{""imageOffset"":17386,""symbol"":""__psynch_cvwait"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":27247,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1249,""imageIndex"":2},{""imageOffset"":2482708,""symbol"":""PyThread_acquire_lock_timed"",""symbolLocation"":340,""imageIndex"":4},{""imageOffset"":3022238,""symbol"":""acquire_timed"",""symbolLocation"":318,""imageIndex"":4},{""imageOffset"":3022812,""symbol"":""lock_PyThread_acquire_lock"",""symbolLocation"":44,""imageIndex"":4},{""imageOffset"":752391,""symbol"":""method_vectorcall_VARARGS_KEYWORDS"",""symbolLocation"":167,""imageIndex"":4},{""imageOffset"":1917679,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":60207,""imageIndex"":4},{""imageOffset"":1942736,""symbol"":""_PyEval_Vector"",""symbolLocation"":128,""imageIndex"":4},{""imageOffset"":698390,""symbol"":""method_vectorcall"",""symbolLocation"":454,""imageIndex"":4},{""imageOffset"":3025702,""symbol"":""thread_run"",""symbolLocation"":230,""imageIndex"":4},{""imageOffset"":2481828,""symbol"":""pythread_wrapper"",""symbolLocation"":36,""imageIndex"":4},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]}], ""usedImages"" : [ { ""size"" : 0, ""source"" : ""A"", ""base"" : 0, ""uuid"" : ""00000000-0000-0000-0000-000000000000"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 140703461011456, ""size"" : 229376, ""uuid"" : ""792406fe-2224-3c14-ba9f-f076fd7839d2"", ""path"" : ""\/usr\/lib\/system\/libsystem_kernel.dylib"", ""name"" : ""libsystem_kernel.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 140703461240832, ""size"" : 49152, ""uuid"" : ""f32b6d06-b156-3da0-b086-a31cf011362b"", ""path"" : ""\/usr\/lib\/system\/libsystem_pthread.dylib"", ""name"" : ""libsystem_pthread.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 140703459995648, ""size"" : 561152, ""uuid"" : ""e8499aa8-6800-372f-bd48-82846d88c6cb"", ""path"" : ""\/usr\/lib\/system\/libsystem_c.dylib"", ""name"" : ""libsystem_c.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4527198208, ""CFBundleShortVersionString"" : ""3.11.2, (c) 2001-2023 Python Software Foundation."", ""CFBundleIdentifier"" : ""org.python.python"", ""size"" : 4079616, ""uuid"" : ""24670b23-d78a-3eaa-bca8-22faf877f190"", ""path"" : ""\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/Python"", ""name"" : ""Python"", ""CFBundleVersion"" : ""3.11.2"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 140703461339136, ""size"" : 40960, ""uuid"" : ""bd2bd848-f9c9-35ff-9795-32d31977523d"", ""path"" : ""\/usr\/lib\/system\/libsystem_platform.dylib"", ""name"" : ""libsystem_platform.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 140703459274752, ""size"" : 180224, ""uuid"" : ""8360f423-5eb8-317d-9cc4-3d42e94f8631"", ""path"" : ""\/usr\/lib\/system\/libsystem_malloc.dylib"", ""name"" : ""libsystem_malloc.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 140703127527424, ""size"" : 196608, ""uuid"" : ""ef33add1-6b70-3cc9-8bbc-c8544b609d2b"", ""path"" : ""\/usr\/libexec\/rosetta\/runtime"", ""name"" : ""runtime"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 5272870912, ""size"" : 165052416, ""uuid"" : ""4aa1de3e-464c-340c-ab61-bcd39bfc7658"", ""path"" : ""\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWebEngineCore.framework\/Versions\/A\/QtWebEngineCore"", ""name"" : ""QtWebEngineCore"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 5041627136, ""size"" : 16384, ""uuid"" : ""e81a2322-9755-3b07-b226-bdaa988e1f3b"", ""path"" : ""\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_queue.cpython-311-darwin.so"", ""name"" : ""_queue.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4521373696, ""size"" : 32768, ""uuid"" : ""fab56287-4c23-300d-9887-cd45a5f7d3a7"", ""path"" : ""\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/select.cpython-311-darwin.so"", ""name"" : ""select.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 140703461556224, ""CFBundleShortVersionString"" : ""6.9"", ""CFBundleIdentifier"" : ""com.apple.CoreFoundation"", ""size"" : 5246976, ""uuid"" : ""32d2d187-4e52-376e-bc07-245a48c37e2b"", ""path"" : ""\/System\/Library\/Frameworks\/CoreFoundation.framework\/Versions\/A\/CoreFoundation"", ""name"" : ""CoreFoundation"", ""CFBundleVersion"" : ""1866"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 140703505264640, ""CFBundleShortVersionString"" : ""6.9"", ""CFBundleIdentifier"" : ""com.apple.AppKit"", ""size"" : 15269888, ""uuid"" : ""bcb46e9b-acd5-3b26-878f-a3988bc5df7e"", ""path"" : ""\/System\/Library\/Frameworks\/AppKit.framework\/Versions\/C\/AppKit"", ""name"" : ""AppKit"", ""CFBundleVersion"" : ""2113.60.148"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4632363008, ""size"" : 64094208, ""uuid"" : ""9d768904-ac4b-327d-8126-cec11a08b966"", ""path"" : ""\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libopenblas64_.0.dylib"", ""name"" : ""libopenblas64_.0.dylib"" } ], ""sharedCache"" : { ""base"" : 140703457984512, ""size"" : 19331678208, ""uuid"" : ""f3387257-f96f-3907-b94c-1d7f0ebef98b"" }, ""vmSummary"" : ""ReadOnly portion of Libraries: Total=1.5G resident=0K(0%) swapped_out_or_unallocated=1.5G(100%)\nWritable regions: Total=3.5G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=3.5G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 640K 5 \nActivity Tracing 256K 1 \nCG backing stores 2176K 4 \nCG image 844K 41 \nColorSync 232K 28 \nCoreAnimation 1156K 21 \nCoreGraphics 12K 2 \nCoreUI image data 4348K 32 \nFoundation 16K 1 \nKernel Alloc Once 8K 1 \nMALLOC 1.7G 461 \nMALLOC guard page 192K 8 \nMALLOC_MEDIUM (reserved) 640.0M 7 reserved VM address space (unallocated)\nMALLOC_NANO (reserved) 256.0M 1 reserved VM address space (unallocated)\nMach message 24K 6 \nOpenGL GLSL 384K 4 \nRosetta Arena 4096K 2 \nRosetta Generic 1352K 335 \nRosetta IndirectBranch 2048K 1 \nRosetta JIT 128.0M 1 \nRosetta Return Stack 1000K 100 \nRosetta Thread Context 1000K 100 \nSTACK GUARD 44K 11 \nStack 353.7M 50 \nStack Guard 56.2M 39 \nVM_ALLOCATE 298.4M 362 \nVM_ALLOCATE (reserved) 128.1M 16 reserved VM address space (unallocated)\n__CTF 756 1 \n__DATA 47.5M 710 \n__DATA_CONST 31.1M 345 \n__DATA_DIRTY 1646K 214 \n__FONT_DATA 4K 1 \n__GLSLBUILTINS 5176K 1 \n__LINKEDIT 744.3M 188 \n__OBJC_RO 82.8M 1 \n__OBJC_RW 3200K 2 \n__TEXT 830.2M 709 \n__UNICODE 592K 1 \ndyld private memory 1280K 3 \nmapped file 5.4G 1270 \nshared memory 3136K 24 \nunshared pmap 11.2M 9 \n=========== ======= ======= \nTOTAL 10.7G 5119 \nTOTAL, minus reserved VM space 9.7G 5119 \n"", ""legacyInfo"" : { ""threadTriggered"" : { ""name"" : ""CrBrowserMain"", ""queue"" : ""com.apple.main-thread"" } }, ""trialInfo"" : { ""rollouts"" : [ { ""rolloutId"" : ""6297d96be2c9387df974efa4"", ""factorPackIds"" : { }, ""deploymentId"" : 240000029 }, { ""rolloutId"" : ""60da5e84ab0ca017dace9abf"", ""factorPackIds"" : { }, ""deploymentId"" : 240000008 } ], ""experiments"" : [ { ""treatmentId"" : ""c47ab4cc-c9c3-4b5d-a87c-e2433ce02597"", ""experimentId"" : ""6639bc6ba73d460582162323"", ""deploymentId"" : 400000006 } ] } } ===== Log before crash start ===== Startup Messages --- warnings | Replacing fetcher for 'ngff' and format OME-Zarr from OME-Zarr bundle with that from OME-Zarr bundle Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR bundle with that from NMRSTAR bundle UCSF ChimeraX version: 1.7.1 (2024-01-23) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open > /Users/joe/Downloads/fold_2024_09_20_myadm_trail_trimer/fold_2024_09_20_myadm_trail_trimer_model_0.cif > /Users/joe/Downloads/fold_2024_09_20_myadm_trail_trimer/fold_2024_09_20_myadm_trail_trimer_model_1.cif > /Users/joe/Downloads/fold_2024_09_20_myadm_trail_trimer/fold_2024_09_20_myadm_trail_trimer_model_2.cif > /Users/joe/Downloads/fold_2024_09_20_myadm_trail_trimer/fold_2024_09_20_myadm_trail_trimer_model_3.cif > /Users/joe/Downloads/fold_2024_09_20_myadm_trail_trimer/fold_2024_09_20_myadm_trail_trimer_model_4.cif Chain information for fold_2024_09_20_myadm_trail_trimer_model_0.cif #1 --- Chain | Description A B C | . D | . Chain information for fold_2024_09_20_myadm_trail_trimer_model_1.cif #2 --- Chain | Description A B C | . D | . Chain information for fold_2024_09_20_myadm_trail_trimer_model_2.cif #3 --- Chain | Description A B C | . D | . Chain information for fold_2024_09_20_myadm_trail_trimer_model_3.cif #4 --- Chain | Description A B C | . D | . Chain information for fold_2024_09_20_myadm_trail_trimer_model_4.cif #5 --- Chain | Description A B C | . D | . > ui tool show ""AlphaFold Error Plot"" > alphafold pae #1 file > /Users/joe/Downloads/fold_2024_09_20_myadm_trail_trimer/fold_2024_09_20_myadm_trail_trimer_full_data_0.json > color bfactor #1 palette alphafold 9810 atoms, 1234 residues, atom bfactor range 14.7 to 92.7 > ui tool show ""AlphaFold Error Plot"" > alphafold pae #2 file > /Users/joe/Downloads/fold_2024_09_20_myadm_trail_trimer/fold_2024_09_20_myadm_trail_trimer_full_data_1.json > color bfactor #2 palette alphafold 9810 atoms, 1234 residues, atom bfactor range 13.5 to 92.6 > ui tool show ""AlphaFold Error Plot"" > alphafold pae #3 file > /Users/joe/Downloads/fold_2024_09_20_myadm_trail_trimer/fold_2024_09_20_myadm_trail_trimer_full_data_2.json > color bfactor #3 palette alphafold 9810 atoms, 1234 residues, atom bfactor range 15.1 to 92.6 > ui tool show ""AlphaFold Error Plot"" > alphafold pae #4 file > /Users/joe/Downloads/fold_2024_09_20_myadm_trail_trimer/fold_2024_09_20_myadm_trail_trimer_full_data_3.json > color bfactor #4 palette alphafold 9810 atoms, 1234 residues, atom bfactor range 13.5 to 92.5 > ui tool show ""AlphaFold Error Plot"" > alphafold pae #5 file > /Users/joe/Downloads/fold_2024_09_20_myadm_trail_trimer/fold_2024_09_20_myadm_trail_trimer_full_data_4.json > color bfactor #5 palette alphafold 9810 atoms, 1234 residues, atom bfactor range 13.1 to 92.3 > hide #2 models > hide #3 models > hide #4 models > hide #5 models > hide #1 models > show #2 models > hide #2 models > show #3 models > hide #3 models > show #4 models > hide #4 models > show #5 models > hide #5 models > show #5 models > hide #5 models > show #4 models > hide #4 models > show #1 models > show #2 models > show #3 models > show #4 models > show #5 models > select add #1 9810 atoms, 10053 bonds, 1234 residues, 1 model selected > ui mousemode right ""translate selected models"" > view matrix models #1,1,0,0,-64.035,0,1,0,159.1,0,0,1,202.23 > select add #2 19620 atoms, 20106 bonds, 2468 residues, 2 models selected > select subtract #1 9810 atoms, 10053 bonds, 1234 residues, 1 model selected > view matrix models #2,1,0,0,-29.522,0,1,0,80.841,0,0,1,112.05 > ui mousemode right ""rotate selected models"" > select subtract #2 Nothing selected > select add #3 9810 atoms, 10053 bonds, 1234 residues, 1 model selected > view matrix models > #3,-0.62242,-0.66271,0.41642,-38.429,0.68585,-0.20548,0.69813,27.644,-0.3771,0.72013,0.58242,-15.639 > view matrix models > #3,-0.8027,-0.49839,0.32754,-44.503,0.52147,-0.32004,0.79098,24.217,-0.28939,0.80572,0.51679,-14.006 > ui mousemode right ""translate selected models"" > view matrix models > #3,-0.8027,-0.49839,0.32754,-79.739,0.52147,-0.32004,0.79098,68.85,-0.28939,0.80572,0.51679,-20.478 > select subtract #3 Nothing selected > select add #4 9810 atoms, 10053 bonds, 1234 residues, 1 model selected > view matrix models #4,1,0,0,-53.542,0,1,0,15.432,0,0,1,-137.68 > select subtract #4 Nothing selected > select add #5 9810 atoms, 10053 bonds, 1234 residues, 1 model selected > view matrix models #5,1,0,0,-55.302,0,1,0,-39.326,0,0,1,-277.06 > select subtract #5 Nothing selected > select add #1 9810 atoms, 10053 bonds, 1234 residues, 1 model selected > ui mousemode right ""rotate selected models"" > view matrix models > #1,0.99991,0.0052477,0.012504,-63.852,-0.0050364,0.99984,-0.016871,159.16,-0.012591,0.016807,0.99978,202.96 > view matrix models > #1,0.51581,-0.11468,0.84899,-51.246,-0.64161,0.60497,0.47153,167.41,-0.56769,-0.78795,0.23846,193.99 > view matrix models > #1,0.57816,-0.067393,0.81313,-51.793,-0.67842,0.51396,0.52497,166.31,-0.4533,-0.85516,0.25143,189.51 > ui mousemode right ""translate selected models"" > view matrix models > #1,0.57816,-0.067393,0.81313,-54.698,-0.67842,0.51396,0.52497,177.96,-0.4533,-0.85516,0.25143,208.42 > select subtract #1 Nothing selected > select add #2 9810 atoms, 10053 bonds, 1234 residues, 1 model selected > ui mousemode right ""rotate selected models"" > view matrix models > #2,-0.55254,-0.76613,0.32826,-23.543,0.68278,-0.19017,0.70544,85.978,-0.47804,0.61391,0.62817,109.57 > view matrix models > #2,-0.93131,0.092752,0.35223,-27.932,0.36423,0.23232,0.90187,83.802,0.0018215,0.96821,-0.25014,107.84 > view matrix models > #2,-0.92496,0.13026,0.35705,-28.157,0.37644,0.18443,0.9079,84.051,0.052406,0.97418,-0.21963,107.71 > select subtract #2 Nothing selected > select add #3 9810 atoms, 10053 bonds, 1234 residues, 1 model selected > view matrix models > #3,-0.35948,0.39377,-0.846,-77.594,0.91934,-0.0059472,-0.39341,72.625,-0.15994,-0.91919,-0.35987,-12.309 > view matrix models > #3,-0.40798,0.58935,-0.69729,-79.207,0.91038,0.20485,-0.35952,71.48,-0.069041,-0.78147,-0.62011,-11.73 > ui mousemode right ""translate selected models"" > view matrix models > #3,-0.40798,0.58935,-0.69729,-83.953,0.91038,0.20485,-0.35952,78.989,-0.069041,-0.78147,-0.62011,-10.347 > ui mousemode right ""rotate selected models"" > view matrix models > #3,-0.41859,0.61249,-0.67055,-84.233,0.89926,0.17631,-0.40032,78.649,-0.12697,-0.77056,-0.62459,-11.98 > select subtract #3 Nothing selected > select add #2 9810 atoms, 10053 bonds, 1234 residues, 1 model selected > view matrix models > #2,-0.96191,0.20294,0.18315,-28.345,0.23299,0.25816,0.93759,83.788,0.14299,0.94455,-0.29561,107.84 > ui mousemode right ""translate selected models"" > view matrix models > #2,-0.96191,0.20294,0.18315,-24.617,0.23299,0.25816,0.93759,79.439,0.14299,0.94455,-0.29561,110.14 > ui mousemode right ""rotate selected models"" > view matrix models > #2,-0.93343,0.26988,0.23636,-25.085,0.32759,0.37264,0.86823,78.741,0.14624,0.88787,-0.43624,110.6 > view matrix models > #2,-0.92616,0.29433,0.23579,-25.232,0.33199,0.3397,0.87999,78.91,0.17891,0.89329,-0.41233,110.5 > ui mousemode right ""translate selected models"" > view matrix models > #2,-0.92616,0.29433,0.23579,-24.109,0.33199,0.3397,0.87999,77.515,0.17891,0.89329,-0.41233,111.01 > select clear > select add #4 9810 atoms, 10053 bonds, 1234 residues, 1 model selected > ui mousemode right ""rotate selected models"" > view matrix models > #4,0.54039,0.79371,0.27928,-58.39,0.30795,0.12232,-0.94351,22.765,-0.78303,0.59587,-0.17832,-137 > view matrix models > #4,0.61563,0.1901,0.76476,-57.675,0.78347,-0.25196,-0.56806,23.636,0.084704,0.94888,-0.30405,-136.51 > view matrix models > #4,-0.85968,0.00082882,0.51083,-58.416,-0.34877,-0.7316,-0.58577,23.728,0.37324,-0.68173,0.62923,-133.07 > view matrix models > #4,-0.79069,0.5399,0.28866,-59.598,-0.51557,-0.33294,-0.78952,22.642,-0.33016,-0.77308,0.5416,-133.54 > view matrix models > #4,-0.88225,0.37591,0.28342,-59.089,-0.36399,-0.16286,-0.91705,22.688,-0.29857,-0.91223,0.28051,-132.01 > ui mousemode right ""translate selected models"" > view matrix models > #4,-0.88225,0.37591,0.28342,-29.863,-0.36399,-0.16286,-0.91705,4.9703,-0.29857,-0.91223,0.28051,-82.9 > select add #2 19620 atoms, 20106 bonds, 2468 residues, 2 models selected > select subtract #4 9810 atoms, 10053 bonds, 1234 residues, 1 model selected > view matrix models > #2,-0.92616,0.29433,0.23579,-21.209,0.33199,0.3397,0.87999,99.203,0.17891,0.89329,-0.41233,161.14 > select subtract #2 Nothing selected > select add #3 9810 atoms, 10053 bonds, 1234 residues, 1 model selected > view matrix models > #3,-0.41859,0.61249,-0.67055,-76.011,0.89926,0.17631,-0.40032,110.52,-0.12697,-0.77056,-0.62459,72.983 > select subtract #3 Nothing selected > select add #4 9810 atoms, 10053 bonds, 1234 residues, 1 model selected > view matrix models > #4,-0.88225,0.37591,0.28342,-46.116,-0.36399,-0.16286,-0.91705,22.307,-0.29857,-0.91223,0.28051,30.649 > select subtract #4 Nothing selected > select add #5 9810 atoms, 10053 bonds, 1234 residues, 1 model selected > view matrix models #5,1,0,0,-78.202,0,1,0,-14.935,0,0,1,-88.375 > ui mousemode right ""rotate selected models"" > view matrix models > #5,0.7302,-0.64342,-0.22981,-80.205,0.071363,0.40634,-0.91093,-18.378,0.6795,0.64876,0.34262,-88.384 > view matrix models > #5,0.38045,-0.8959,-0.2294,-79.636,0.5015,0.40828,-0.76276,-20.855,0.77702,0.17515,0.60462,-91.676 > ui mousemode right ""translate selected models"" > view matrix models > #5,0.38045,-0.8959,-0.2294,-67.166,0.5015,0.40828,-0.76276,-18.449,0.77702,0.17515,0.60462,-67.906 > select clear > ui mousemode right zoom > preset ""overall look"" ""publication 1 (silhouettes)"" Using preset: Overall Look / Publication 1 (Silhouettes) Preset expands to these ChimeraX commands: set bg white graphics silhouettes t lighting depthCue f > ui tool show ""Show Sequence Viewer"" > sequence chain #1/D #2/D #3/D #4/D #5/D Alignment identifier is 1 > select #1/D:64-65 #2/D:64-65 #3/D:64-65 #4/D:64-65 #5/D:64-65 60 atoms, 55 bonds, 10 residues, 5 models selected > select #1/D:64-69 #2/D:64-69 #3/D:64-69 #4/D:64-69 #5/D:64-69 240 atoms, 245 bonds, 30 residues, 5 models selected . [ID: 1] region 5 chains [64-69] RMSD: 194.332 > select #1/D:29 #2/D:29 #3/D:29 #4/D:29 #5/D:29 35 atoms, 35 bonds, 5 residues, 5 models selected > select #1/D:29-32 #2/D:29-32 #3/D:29-32 #4/D:29-32 #5/D:29-32 155 atoms, 155 bonds, 20 residues, 5 models selected . [ID: 1] region 5 chains [29-32] RMSD: 194.559 > select #1/D:35 #2/D:35 #3/D:35 #4/D:35 #5/D:35 35 atoms, 35 bonds, 5 residues, 5 models selected > select #1/D:35-58 #2/D:35-58 #3/D:35-58 #4/D:35-58 #5/D:35-58 855 atoms, 860 bonds, 120 residues, 5 models selected . [ID: 1] region 5 chains [35-58] RMSD: 194.914 > select #1/D:63 #2/D:63 #3/D:63 #4/D:63 #5/D:63 30 atoms, 25 bonds, 5 residues, 5 models selected > select #1/D:63-80 #2/D:63-80 #3/D:63-80 #4/D:63-80 #5/D:63-80 740 atoms, 770 bonds, 90 residues, 5 models selected . [ID: 1] region 5 chains [63-80] RMSD: 193.861 > select #1/D:289 #2/D:289 #3/D:289 #4/D:289 #5/D:289 25 atoms, 20 bonds, 5 residues, 5 models selected > select #1/D:289-296 #2/D:289-296 #3/D:289-296 #4/D:289-296 #5/D:289-296 345 atoms, 350 bonds, 40 residues, 5 models selected . [ID: 1] region 5 chains [289-296] RMSD: 197.040 > select > #1/D:29-31,35-57,63-87,90-93,101-127,132-158,168-170,172-192,194-196,201-225,229-231,236-263,265-267,273-275,277-279,289-316 > #2/D:29-31,35-57,63-87,90-93,101-127,132-158,168-170,172-192,194-196,201-225,229-231,236-263,265-267,273-275,277-279,289-316 > #3/D:29-31,35-57,63-87,90-93,101-127,132-158,168-170,172-192,194-196,201-225,229-231,236-263,265-267,273-275,277-279,289-316 > #4/D:29-31,35-57,63-87,90-93,101-127,132-158,168-170,172-192,194-196,201-225,229-231,236-263,265-267,273-275,277-279,289-316 > #5/D:29-31,35-57,63-87,90-93,101-127,132-158,168-170,172-192,194-196,201-225,229-231,236-263,265-267,273-275,277-279,289-316 8930 atoms, 9105 bonds, 1145 residues, 5 models selected > select #1/D:289 #2/D:289 #3/D:289 #4/D:289 #5/D:289 25 atoms, 20 bonds, 5 residues, 5 models selected > select #1/D:289-316 #2/D:289-316 #3/D:289-316 #4/D:289-316 #5/D:289-316 1085 atoms, 1105 bonds, 140 residues, 5 models selected . [ID: 1] region 5 chains [289-316] RMSD: 197.950 > select #1/D:236 #2/D:236 #3/D:236 #4/D:236 #5/D:236 55 atoms, 55 bonds, 5 residues, 5 models selected > select #1/D:236-260 #2/D:236-260 #3/D:236-260 #4/D:236-260 #5/D:236-260 960 atoms, 990 bonds, 125 residues, 5 models selected . [ID: 1] region 5 chains [236-260] RMSD: 198.025 > open > /Users/joe/Downloads/fold_2024_09_20_myadm_trail_trimer/fold_2024_09_20_myadm_trail_trimer_summary_confidences_0.json Failed opening file /Users/joe/Downloads/fold_2024_09_20_myadm_trail_trimer/fold_2024_09_20_myadm_trail_trimer_summary_confidences_0.json: User did not choose format > open > /Users/joe/Downloads/fold_2024_09_20_myadm_trail_trimer/fold_2024_09_20_myadm_trail_trimer_summary_confidences_1.json Failed opening file /Users/joe/Downloads/fold_2024_09_20_myadm_trail_trimer/fold_2024_09_20_myadm_trail_trimer_summary_confidences_1.json: User did not choose format > close #4 > close > open /Users/joe/Downloads/overlay_MD_vs_XRC.pse Unrecognized file suffix '.pse' > open > /Users/joe/Downloads/fold_2024_09_20_myadm_trail_trimer/fold_2024_09_20_myadm_trail_trimer_model_0.cif Chain information for fold_2024_09_20_myadm_trail_trimer_model_0.cif #1 --- Chain | Description A B C | . D | . > select clear > close > open > /Users/joe/Downloads/fold_2024_09_20_myadm_trail_trimer/fold_2024_09_20_myadm_trail_trimer_full_data_1.json > open > /Users/joe/Downloads/fold_2024_09_20_myadm_trail_trimer/fold_2024_09_20_myadm_trail_trimer_model_1.cif Chain information for fold_2024_09_20_myadm_trail_trimer_model_1.cif #1 --- Chain | Description A B C | . D | . > close > open > /Users/joe/projects/depoKP36/depoKP36_cryoEM_models/apo_depoKP36_c3_chainA_WIP.pdb Chain information for apo_depoKP36_c3_chainA_WIP.pdb #1 --- Chain | Description A | No description available > open > /Users/joe/projects/depoKP36/depoKP36_cryoEM_models/cryosparc_P4_J113_004_volume_map_C1_apo.mrc Opened cryosparc_P4_J113_004_volume_map_C1_apo.mrc as #2, grid size 336,336,336, pixel 1.05, shown at level 0.0741, step 2, values float32 > volume #2 step 1 > volume #2 level 0.3392 > fitmap #1 inMap #2 Fit molecule apo_depoKP36_c3_chainA_WIP.pdb (#1) to map cryosparc_P4_J113_004_volume_map_C1_apo.mrc (#2) using 10542 atoms average map value = 0.3604, steps = 112 shifted from previous position = 6.01 rotated from previous position = 11.1 degrees atoms outside contour = 5906, contour level = 0.33924 Position of apo_depoKP36_c3_chainA_WIP.pdb (#1) relative to cryosparc_P4_J113_004_volume_map_C1_apo.mrc (#2) coordinates: Matrix rotation and translation 0.99609750 -0.06946173 0.05445031 -0.87878229 0.05903330 0.98296974 0.17402746 -33.94933995 -0.06561125 -0.17013394 0.98323426 45.46911358 Axis -0.89048451 0.31064775 0.33246853 Axis point 0.00000000 234.36773024 227.57141502 Rotation angle (degrees) 11.14215530 Shift along axis 5.35330538 > select add #1 10542 atoms, 10642 bonds, 706 residues, 1 model selected > ui mousemode right ""translate selected models"" > view matrix models > #1,0.9961,-0.069462,0.05445,4.3135,0.059033,0.98297,0.17403,-30.309,-0.065611,-0.17013,0.98323,41.483 > view matrix models > #1,0.9961,-0.069462,0.05445,11.036,0.059033,0.98297,0.17403,-29.487,-0.065611,-0.17013,0.98323,41.911 > view matrix models > #1,0.9961,-0.069462,0.05445,7.0925,0.059033,0.98297,0.17403,-22.883,-0.065611,-0.17013,0.98323,43.512 > ui mousemode right ""rotate selected models"" > view matrix models > #1,0.58493,-0.7461,0.31809,153.61,0.75308,0.64523,0.1286,-86.053,-0.30119,0.16433,0.9393,37.6 > view matrix models > #1,0.555,-0.81546,0.16435,197.91,0.75532,0.57678,0.31115,-106.6,-0.34852,-0.048546,0.93604,83.492 > ui mousemode right ""translate selected models"" > view matrix models > #1,0.555,-0.81546,0.16435,196.08,0.75532,0.57678,0.31115,-112.47,-0.34852,-0.048546,0.93604,72.178 > view matrix models > #1,0.555,-0.81546,0.16435,194.4,0.75532,0.57678,0.31115,-115.6,-0.34852,-0.048546,0.93604,74.751 > ui mousemode right ""rotate selected models"" > view matrix models > #1,0.85532,-0.4773,0.2015,74.054,0.40311,0.85742,0.31991,-99.795,-0.32546,-0.1924,0.92577,96.939 > ui mousemode right ""translate selected models"" > view matrix models > #1,0.85532,-0.4773,0.2015,73.795,0.40311,0.85742,0.31991,-102.93,-0.32546,-0.1924,0.92577,97.78 > view matrix models > #1,0.85532,-0.4773,0.2015,74.381,0.40311,0.85742,0.31991,-103.46,-0.32546,-0.1924,0.92577,101.84 > view matrix models > #1,0.85532,-0.4773,0.2015,58.384,0.40311,0.85742,0.31991,-110.81,-0.32546,-0.1924,0.92577,109.26 > ui mousemode right ""rotate selected models"" > view matrix models > #1,0.80573,-0.58088,-0.11566,140.75,0.59123,0.80044,0.098674,-97.388,0.035262,-0.14789,0.98838,23.623 > ui mousemode right ""translate selected models"" > view matrix models > #1,0.80573,-0.58088,-0.11566,157.44,0.59123,0.80044,0.098674,-85.121,0.035262,-0.14789,0.98838,21.66 > view matrix models > #1,0.80573,-0.58088,-0.11566,157.47,0.59123,0.80044,0.098674,-85.681,0.035262,-0.14789,0.98838,20.109 > volume #2 level 0.4183 > fitmap #1 inMap #2 Fit molecule apo_depoKP36_c3_chainA_WIP.pdb (#1) to map cryosparc_P4_J113_004_volume_map_C1_apo.mrc (#2) using 10542 atoms average map value = 0.5573, steps = 120 shifted from previous position = 1.85 rotated from previous position = 7.45 degrees atoms outside contour = 4193, contour level = 0.41831 Position of apo_depoKP36_c3_chainA_WIP.pdb (#1) relative to cryosparc_P4_J113_004_volume_map_C1_apo.mrc (#2) coordinates: Matrix rotation and translation 0.81658487 -0.57718429 -0.00688782 134.77703355 0.57710733 0.81611843 0.02996385 -74.56539665 -0.01167339 -0.02844304 0.99952725 7.06151501 Axis -0.05053469 0.00414056 0.99871372 Axis point 184.88488312 174.74999679 0.00000000 Rotation angle (degrees) 35.30221223 Shift along axis -0.06722600 > volume #2 level 0.302 > close #2 > open > /Users/joe/projects/depoKP36/depoKP36_cryoEM_models/cryosparc_P4_J161_004_volume_map_C1_EPS.mrc Opened cryosparc_P4_J161_004_volume_map_C1_EPS.mrc as #2, grid size 336,336,336, pixel 1.1, shown at level 0.0303, step 2, values float32 > volume #2 step 1 > volume #2 level 0.2036 > volume #2 level 0.289 > volume #2 level 0.17 > view matrix models > #1,0.81658,-0.57718,-0.0068878,173.58,0.57711,0.81612,0.029964,-92.667,-0.011673,-0.028443,0.99953,5.4587 > close > open > /Users/joe/projects/depoKP36/depoKP36_cryoEM_models/cryosparc_P4_J161_004_volume_map_C1_EPS.mrc > format mrc Opened cryosparc_P4_J161_004_volume_map_C1_EPS.mrc as #1, grid size 336,336,336, pixel 1.1, shown at level 0.0303, step 2, values float32 > volume #1 level 0.1842 > volume #1 step 1 > volume #1 level 0.3032 > volume #1 level 0.1402 > open > /Users/joe/projects/depoKP36/depoKP36_cryoEM_models/EPS_depoKP36_c3_chainA.pdb Chain information for EPS_depoKP36_c3_chainA.pdb #2 --- Chain | Description A | No description available > select add #2 10554 atoms, 10654 bonds, 707 residues, 1 model selected > view matrix models #2,1,0,0,0.69164,0,1,0,5.1447,0,0,1,-12.551 ===== Log before crash end ===== Log: Startup Messages --- warnings | Replacing fetcher for 'ngff' and format OME-Zarr from OME-Zarr bundle with that from OME-Zarr bundle Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR bundle with that from NMRSTAR bundle UCSF ChimeraX version: 1.7.1 (2024-01-23) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 76.3 OpenGL renderer: Apple M2 OpenGL vendor: Apple Python: 3.11.2 Locale: UTF-8 Qt version: PyQt6 6.3.1, Qt 6.3.1 Qt runtime version: 6.3.2 Qt platform: cocoa Hardware: Hardware Overview: Model Name: Mac Model Identifier: Mac14,7 Processor Name: Unknown Processor Speed: 2.4 GHz Number of Processors: 1 Total Number of Cores: 8 L2 Cache: 8 MB Memory: 16 GB Software: System Software Overview: System Version: macOS 12.5.1 (21G83) Kernel Version: Darwin 21.6.0 Time since boot: 10 days 21:25 Graphics/Displays: Apple M2: Chipset Model: Apple M2 Type: GPU Bus: Built-In Total Number of Cores: 10 Vendor: Apple (0x106b) Metal Family: Supported, Metal GPUFamily Apple 7 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2560 x 1600 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal Installed Packages: alabaster: 0.7.16 appdirs: 1.4.4 appnope: 0.1.3 asttokens: 2.4.1 Babel: 2.14.0 backcall: 0.2.0 beautifulsoup4: 4.11.2 blockdiag: 3.0.0 blosc2: 2.0.0 build: 0.10.0 certifi: 2022.12.7 cftime: 1.6.3 charset-normalizer: 3.3.2 ChimeraX-AddCharge: 1.5.13 ChimeraX-AddH: 2.2.5 ChimeraX-AlignmentAlgorithms: 2.0.1 ChimeraX-AlignmentHdrs: 3.4.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.12.2 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.1.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.49.1 ChimeraX-AtomicLibrary: 12.1.5 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3.2 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.10.5 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.2 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.3.2 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-Clipper: 0.22.4 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.5 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.7.1 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2 ChimeraX-DistMonitor: 1.4 ChimeraX-DockPrep: 1.1.3 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ISOLDE: 1.7.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-Label: 1.1.8 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.1.6 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.1.4 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.1.2 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.6.1 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.12.1 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.14 ChimeraX-ModelPanel: 1.4 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.1 ChimeraX-NRRD: 1.1 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.13.1 ChimeraX-PDB: 2.7.3 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.2 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.2 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.11 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.2 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.12.4 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1.2 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.2.2 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.33.3 ChimeraX-uniprot: 2.3 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.3.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.3 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.1 contourpy: 1.2.0 cxservices: 1.2.2 cycler: 0.12.1 Cython: 0.29.33 debugpy: 1.8.0 decorator: 5.1.1 docutils: 0.19 executing: 2.0.1 filelock: 3.9.0 fonttools: 4.47.2 funcparserlib: 2.0.0a0 glfw: 2.6.4 grako: 3.16.5 h5py: 3.10.0 html2text: 2020.1.16 idna: 3.6 ihm: 0.38 imagecodecs: 2023.9.18 imagesize: 1.4.1 ipykernel: 6.23.2 ipython: 8.14.0 ipython-genutils: 0.2.0 ipywidgets: 8.1.1 jedi: 0.18.2 Jinja2: 3.1.2 jupyter-client: 8.2.0 jupyter-core: 5.7.1 jupyterlab-widgets: 3.0.9 kiwisolver: 1.4.5 line-profiler: 4.0.2 lxml: 4.9.2 lz4: 4.3.2 MarkupSafe: 2.1.4 matplotlib: 3.7.2 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.6.0 netCDF4: 1.6.2 networkx: 3.1 nibabel: 5.0.1 nptyping: 2.5.0 numexpr: 2.8.8 numpy: 1.25.1 openvr: 1.23.701 packaging: 21.3 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pexpect: 4.9.0 pickleshare: 0.7.5 pillow: 10.2.0 pip: 23.0 pkginfo: 1.9.6 platformdirs: 4.1.0 prompt-toolkit: 3.0.43 psutil: 5.9.5 ptyprocess: 0.7.0 pure-eval: 0.2.2 py-cpuinfo: 9.0.0 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.16.1 pynrrd: 1.0.0 PyOpenGL: 3.1.7 PyOpenGL-accelerate: 3.1.7 pyopenxr: 1.0.2801 pyparsing: 3.0.9 pyproject-hooks: 1.0.0 PyQt6-commercial: 6.3.1 PyQt6-Qt6: 6.3.2 PyQt6-sip: 13.4.0 PyQt6-WebEngine-commercial: 6.3.1 PyQt6-WebEngine-Qt6: 6.3.2 python-dateutil: 2.8.2 pytz: 2023.3.post1 pyzmq: 25.1.2 qtconsole: 5.4.3 QtPy: 2.4.1 RandomWords: 0.4.0 requests: 2.31.0 scipy: 1.11.1 setuptools: 67.4.0 setuptools-scm: 7.0.5 sfftk-rw: 0.7.3 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.5 sphinx: 6.1.3 sphinx-autodoc-typehints: 1.22 sphinxcontrib-applehelp: 1.0.8 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.6 sphinxcontrib-htmlhelp: 2.0.5 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.7 sphinxcontrib-serializinghtml: 1.1.10 stack-data: 0.6.3 superqt: 0.5.0 tables: 3.8.0 tcia-utils: 1.5.1 tifffile: 2023.7.18 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.4 traitlets: 5.9.0 typing-extensions: 4.9.0 tzdata: 2023.4 urllib3: 2.1.0 wcwidth: 0.2.13 webcolors: 1.12 wheel: 0.38.4 wheel-filename: 1.4.1 widgetsnbextension: 4.0.9 }}} " defect closed normal Core duplicate Tom Goddard all ChimeraX