id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 16213 Crash on Mac waking from sleep lyuf2@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-14.6.1-arm64-arm-64bit ChimeraX Version: 1.8 (2024-06-10 23:15:52 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. 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reserved VM space 4.1G 4385 \n"", ""legacyInfo"" : { ""threadTriggered"" : { ""name"" : ""CrBrowserMain"", ""queue"" : ""com.apple.main-thread"" } }, ""logWritingSignature"" : ""6adeb57a55f13df3622dee06b3c3cc10cf749019"", ""trialInfo"" : { ""rollouts"" : [ { ""rolloutId"" : ""5ffde50ce2aacd000d47a95f"", ""factorPackIds"" : { }, ""deploymentId"" : 240000448 }, { ""rolloutId"" : ""6425c75e4327780c10cc4252"", ""factorPackIds"" : { ""SIRI_HOME_AUTOMATION_INTENT_SELECTION_CACHE"" : ""642600a457e7664b1698eb32"" }, ""deploymentId"" : 240000004 } ], ""experiments"" : [ { ""treatmentId"" : ""45f4e2a5-551b-4bc2-a2dc-19c244dda8f8"", ""experimentId"" : ""6643969b3099cf28e049862f"", ""deploymentId"" : 400000007 } ] } } ===== Log before crash start ===== Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 1.8 (2024-06-10) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""/Users/fanyanglv/Library/CloudStorage/OneDrive- > McMasterUniversity/RhsP2 writing/RhsP2 writing/alforld/Toxic plus > NAD/DT_plus_nad/fold_dt_plus_nad_model_0.cif"" Chain information for fold_dt_plus_nad_model_0.cif #1 --- Chain | Description A | . > open ""/Users/fanyanglv/Library/CloudStorage/OneDrive- > McMasterUniversity/RhsP2 writing/RhsP2 writing/alforld/Toxic plus > NAD/fold_ctdoxin_plus_nad/fold_ctdoxin_plus_nad_model_0.cif"" Chain information for fold_ctdoxin_plus_nad_model_0.cif #2 --- Chain | Description A | . > ui tool show Matchmaker The cached device pixel ratio value was stale on window expose. Please file a QTBUG which explains how to reproduce. > matchmaker #2 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker fold_dt_plus_nad_model_0.cif, chain A (#1) with fold_ctdoxin_plus_nad_model_0.cif, chain A (#2), sequence alignment score = 26.2 RMSD between 4 pruned atom pairs is 0.800 angstroms; (across all 71 pairs: 18.468) > hide #1 models > select add #2 1561 atoms, 1614 bonds, 191 residues, 1 model selected Alignment identifier is 2/A > select #2/A:3 8 atoms, 7 bonds, 1 residue, 1 model selected > select #2/A:3-6 36 atoms, 36 bonds, 4 residues, 1 model selected > select #2/A:5 11 atoms, 10 bonds, 1 residue, 1 model selected > select #2/A:5 11 atoms, 10 bonds, 1 residue, 1 model selected > show #1 models > hide #2 models > select #2/A:1-2 17 atoms, 16 bonds, 2 residues, 1 model selected > select #2/A 1517 atoms, 1566 bonds, 190 residues, 1 model selected > hide #1 atoms > undo > select #2/A:1-2 17 atoms, 16 bonds, 2 residues, 1 model selected > select #2/A 1517 atoms, 1566 bonds, 190 residues, 1 model selected > hide #1 atoms > show #1 atoms > undo > select #2/A:190 12 atoms, 11 bonds, 1 residue, 1 model selected > select #2/A:190 12 atoms, 11 bonds, 1 residue, 1 model selected > select add #1 1489 atoms, 1519 bonds, 188 residues, 2 models selected > select subtract #1 12 atoms, 11 bonds, 1 residue, 1 model selected > select #2/A:1-2 17 atoms, 16 bonds, 2 residues, 1 model selected > select #2/A:1-25 196 atoms, 199 bonds, 25 residues, 1 model selected > select #2/A:1 8 atoms, 7 bonds, 1 residue, 1 model selected > select #2/A:1-71 560 atoms, 571 bonds, 71 residues, 1 model selected > select add #2 1561 atoms, 1614 bonds, 191 residues, 1 model selected > show #2 models > select subtract #2 Nothing selected > hide #2 models Alignment identifier is 1/A Destroying pre-existing alignment with identifier 2/A Alignment identifier is 2/A > select #1/A:9 6 atoms, 5 bonds, 1 residue, 1 model selected > select #1/A:9 6 atoms, 5 bonds, 1 residue, 1 model selected > select #1/A:2 8 atoms, 7 bonds, 1 residue, 1 model selected > select #1/A:2-186 1425 atoms, 1452 bonds, 185 residues, 1 model selected > select #1/A:186 5 atoms, 4 bonds, 1 residue, 1 model selected > select #1/A 1433 atoms, 1460 bonds, 186 residues, 1 model selected > select #1/A:186 5 atoms, 4 bonds, 1 residue, 1 model selected > select #1/A:186 5 atoms, 4 bonds, 1 residue, 1 model selected > open ""/Users/fanyanglv/Library/CloudStorage/OneDrive- > McMasterUniversity/RhsP2 writing/RhsP2 writing/alforld/Toxic plus > NAD/fold_rhsp2_plus_nad/fold_rhsp2_plus_nad_model_0.cif"" Chain information for fold_rhsp2_plus_nad_model_0.cif #3 --- Chain | Description A | . The cached device pixel ratio value was stale on window expose. Please file a QTBUG which explains how to reproduce. > ui tool show Matchmaker > matchmaker #2-3 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker fold_dt_plus_nad_model_0.cif, chain A (#1) with fold_ctdoxin_plus_nad_model_0.cif, chain A (#2), sequence alignment score = 26.2 RMSD between 4 pruned atom pairs is 0.800 angstroms; (across all 71 pairs: 18.468) Matchmaker fold_dt_plus_nad_model_0.cif, chain A (#1) with fold_rhsp2_plus_nad_model_0.cif, chain A (#3), sequence alignment score = 32.9 RMSD between 14 pruned atom pairs is 1.401 angstroms; (across all 106 pairs: 14.244) > hide #3 models The cached device pixel ratio value was stale on window expose. Please file a QTBUG which explains how to reproduce. > select #1/A:1 8 atoms, 7 bonds, 1 residue, 1 model selected > select #1/A 1433 atoms, 1460 bonds, 186 residues, 1 model selected > color sel dark gray > select #1/A:186 5 atoms, 4 bonds, 1 residue, 1 model selected > select #1/A:186 5 atoms, 4 bonds, 1 residue, 1 model selected > select #1/A:1 8 atoms, 7 bonds, 1 residue, 1 model selected > select #1/A 1433 atoms, 1460 bonds, 186 residues, 1 model selected > color sel light gray > select #1/A:12 8 atoms, 7 bonds, 1 residue, 1 model selected > select #1/A:12 8 atoms, 7 bonds, 1 residue, 1 model selected > select #1/A:10-13,16-21,51-54,77-82,86-91,131-137,145-149,158-164 354 atoms, 353 bonds, 45 residues, 1 model selected > select #1/A:8 9 atoms, 8 bonds, 1 residue, 1 model selected > select #1/A:8-173 1286 atoms, 1311 bonds, 166 residues, 1 model selected > hide sel atoms > select #1/A:19 10 atoms, 10 bonds, 1 residue, 1 model selected > select #1/A:19 10 atoms, 10 bonds, 1 residue, 1 model selected > show sel atoms > select #1/A:16 6 atoms, 5 bonds, 1 residue, 1 model selected > select #1/A:16-22 54 atoms, 55 bonds, 7 residues, 1 model selected > select #1/A:16-22,49-55 111 atoms, 113 bonds, 14 residues, 1 model selected > select #1/A:16-22,49-58 140 atoms, 143 bonds, 17 residues, 1 model selected > select #1/A:144-145 13 atoms, 12 bonds, 2 residues, 1 model selected > select #1/A:144-147 34 atoms, 34 bonds, 4 residues, 1 model selected > select #1/A:16-21,144-147 79 atoms, 80 bonds, 10 residues, 1 model selected > select #1/A:16-21,50-58,144-147 156 atoms, 159 bonds, 19 residues, 1 model selected > ui tool show ""Color Actions"" The cached device pixel ratio value was stale on window expose. Please file a QTBUG which explains how to reproduce. > color sel orange > color sel #ffbc55ff > color sel #f6ca46ff > color sel #f6cb48ff > color sel #f6ca46ff > color sel #f67880ff > color sel #f6777fff > color sel #f6ca46ff > select #1/A:144 6 atoms, 5 bonds, 1 residue, 1 model selected > select #1/A:144-147 34 atoms, 34 bonds, 4 residues, 1 model selected > color sel #f5c946ff > select #1/A:19 10 atoms, 10 bonds, 1 residue, 1 model selected > select #1/A:19 10 atoms, 10 bonds, 1 residue, 1 model selected > select #1/A:19,63-64 28 atoms, 28 bonds, 3 residues, 1 model selected > select #1/A:58 12 atoms, 12 bonds, 1 residue, 1 model selected > select #1/A:58 12 atoms, 12 bonds, 1 residue, 1 model selected > select #1/A:52 12 atoms, 12 bonds, 1 residue, 1 model selected > select #1/A:52 12 atoms, 12 bonds, 1 residue, 1 model selected > select #1/A:52,146 21 atoms, 20 bonds, 2 residues, 1 model selected > show sel atoms > color sel byhetero > select #1/A:19,52,146 31 atoms, 30 bonds, 3 residues, 1 model selected > color sel byhetero > select #1/A:186 5 atoms, 4 bonds, 1 residue, 1 model selected > select #1/A:186 5 atoms, 4 bonds, 1 residue, 1 model selected > save image.png supersample 4 transparentBackground true > select clear > save image.png supersample 4 transparentBackground true > lighting flat > lighting soft > lighting simple > lighting flat > lighting full > lighting soft > lighting simple > lighting shadows true > graphics silhouettes false > lighting simple > ui tool show ""Side View"" > lighting simple > lighting shadows true > graphics silhouettes true > graphics silhouettes false > lighting flat > lighting full > lighting soft > lighting simple > lighting shadows true > graphics silhouettes false > lighting simple > set bgColor white > save image.png supersample 4 transparentBackground true > hide #1 models > show #2 models > ui tool show ""Side View"" > lighting simple > ui tool show ""Side View"" Alignment identifier is 1/A Alignment identifier is 2/A Alignment identifier is 3/A > select #2/A:1 8 atoms, 7 bonds, 1 residue, 1 model selected > select #2/A 1517 atoms, 1566 bonds, 190 residues, 1 model selected > color sel gray > color sel light gray > select add #2 1561 atoms, 1614 bonds, 191 residues, 1 model selected > ui tool show ""Color Actions"" > color sel #cab28fff > color sel #cab290ff > color sel #c9b18fff > color sel #c8b18fff > color sel #c8b08eff > color sel #c7b08eff > color sel #c7af8dff > color sel #c6af8dff > color sel #c6ae8dff > color sel #c5ae8cff > color sel #c5ad8cff > color sel #c4ad8cff > color sel #c4ad8bff > color sel #c3ac8bff > color sel #c2ab8aff > color sel #c1aa89ff > color sel #c0a989ff > color sel #c0a988ff > color sel #bfa888ff > color sel #bea887ff > color sel #bea787ff > color sel #bda787ff > color sel #bda786ff > color sel #bda686ff > color sel #bca686ff > color sel #bda686ff > color sel #bda787ff > color sel #bea787ff > color sel #bea887ff > color sel #bfa888ff > color sel #bfa988ff > color sel #c0a989ff > color sel #c1aa89ff > color sel #c1aa8aff > color sel #c2ab8aff > color sel #c3ac8bff > color sel #c4ac8bff > color sel #c4ad8bff > color sel #c5ad8cff > color sel #c5ae8cff > color sel #c6ae8dff > color sel #c6af8dff > color sel #c7af8dff > color sel #c7b08eff > color sel #c8b08eff > color sel #c9b18fff > color sel #cab28fff > color sel #cab290ff > color sel #cbb290ff > color sel #cbb390ff > color sel #cbb391ff > color sel #ccb491ff > color sel #cdb492ff > color sel #cdb592ff > color sel #ceb592ff > color sel #cfb693ff > color sel #cfb793ff > color sel #d0b794ff > color sel #d0b894ff > color sel #d1b895ff > color sel #d1b995ff > color sel #d2b995ff > color sel #d2b996ff > color sel #d2ba96ff > color sel #d3ba96ff > color sel #d3ba97ff > color sel #d4bb97ff > color sel #f7dcb1ff > color sel #f2d5abff > color sel byhetero > select subtract #2 Nothing selected > select #2/A:1 8 atoms, 7 bonds, 1 residue, 1 model selected > select #2/A 1517 atoms, 1566 bonds, 190 residues, 1 model selected > color sel light gray > select #2/A:1-2 17 atoms, 16 bonds, 2 residues, 1 model selected > select #2/A:1-6 53 atoms, 53 bonds, 6 residues, 1 model selected > select #2/A:8-9 17 atoms, 16 bonds, 2 residues, 1 model selected > select #2/A:1-9 78 atoms, 78 bonds, 9 residues, 1 model selected > select #2/A:1 8 atoms, 7 bonds, 1 residue, 1 model selected > select #2/A:1-6 53 atoms, 53 bonds, 6 residues, 1 model selected > select #2/A:9 11 atoms, 10 bonds, 1 residue, 1 model selected > select #2/A:8-9 17 atoms, 16 bonds, 2 residues, 1 model selected > select #2/A:7 8 atoms, 7 bonds, 1 residue, 1 model selected > select #2/A:2-7 53 atoms, 53 bonds, 6 residues, 1 model selected > select #2/A:2-7,55-60 97 atoms, 97 bonds, 12 residues, 1 model selected > ui tool show ""Color Actions"" > color sel #f6ca46ff > select #2/A:106-107 15 atoms, 15 bonds, 2 residues, 1 model selected > select #2/A:106-110 42 atoms, 42 bonds, 5 residues, 1 model selected > select #2/A:105 10 atoms, 10 bonds, 1 residue, 1 model selected > select #2/A:105-110 52 atoms, 53 bonds, 6 residues, 1 model selected > select #2/A:108-109 18 atoms, 17 bonds, 2 residues, 1 model selected > select #2/A:108-111 34 atoms, 33 bonds, 4 residues, 1 model selected > ui tool show ""Color Actions"" > color sel #f6ca46ff > select #2/A:10-11 14 atoms, 15 bonds, 2 residues, 1 model selected > select #2/A:10-102 724 atoms, 741 bonds, 93 residues, 1 model selected > select #2/A:2-3 17 atoms, 16 bonds, 2 residues, 1 model selected > select #2/A:2-12 92 atoms, 94 bonds, 11 residues, 1 model selected > hide sel atoms > select #2/A:56 4 atoms, 3 bonds, 1 residue, 1 model selected > select #2/A:56-64 64 atoms, 64 bonds, 9 residues, 1 model selected > hide sel atoms > select #2/A:95 7 atoms, 6 bonds, 1 residue, 1 model selected > select #2/A:95-152 482 atoms, 497 bonds, 58 residues, 1 model selected > hide sel atoms > select #2/A:8-48 325 atoms, 331 bonds, 41 residues, 1 model selected > select #2/A:8-181 1396 atoms, 1441 bonds, 174 residues, 1 model selected > hide sel atoms > undo > hide sel atoms > select #2/A:5 11 atoms, 10 bonds, 1 residue, 1 model selected > select #2/A:5 11 atoms, 10 bonds, 1 residue, 1 model selected > select #2/A:5,59 17 atoms, 15 bonds, 2 residues, 1 model selected > select #2/A:5,59,110 26 atoms, 23 bonds, 3 residues, 1 model selected > show sel atoms > color sel byhetero > hide sel atoms > select clear > select #2/A:188 5 atoms, 4 bonds, 1 residue, 1 model selected > select #2/A:188-190 24 atoms, 24 bonds, 3 residues, 1 model selected > hide sel cartoons > lighting simple > lighting soft > lighting full > lighting flat > lighting shadows true intensity 0.5 > graphics silhouettes false > lighting simple > save image.png supersample 4 transparentBackground true > select #2/A:5-6 16 atoms, 15 bonds, 2 residues, 1 model selected > select #2/A:5-6 16 atoms, 15 bonds, 2 residues, 1 model selected > select #2/A:5-6 16 atoms, 15 bonds, 2 residues, 1 model selected > select #2/A:5 11 atoms, 10 bonds, 1 residue, 1 model selected > select #2/A:5 11 atoms, 10 bonds, 1 residue, 1 model selected > select #2/A:5,59 17 atoms, 15 bonds, 2 residues, 1 model selected > select #2/A:5,59,110 26 atoms, 23 bonds, 3 residues, 1 model selected > show sel atoms > select clear > ui tool show ""Side View"" The cached device pixel ratio value was stale on window expose. Please file a QTBUG which explains how to reproduce. > save image.png supersample 4 transparentBackground true > hide #2 models > show #1 models Alignment identifier is 1/A Alignment identifier is 2/A Alignment identifier is 3/A > select #3/A:8 8 atoms, 7 bonds, 1 residue, 1 model selected > select #3/A:8-97 705 atoms, 720 bonds, 90 residues, 1 model selected > select #1/A:3 7 atoms, 6 bonds, 1 residue, 1 model selected > select #1/A:3-85 634 atoms, 650 bonds, 83 residues, 1 model selected > hide sel atoms > select #1/A:88 9 atoms, 8 bonds, 1 residue, 1 model selected > select #1/A:88-180 733 atoms, 743 bonds, 93 residues, 1 model selected > hide sel atoms > select clear > lighting soft > lighting simple > lighting soft > lighting full > lighting flat > lighting shadows true intensity 0.5 > graphics silhouettes false > ui tool show ""Side View"" > lighting simple > save image.png supersample 4 transparentBackground true ===== Log before crash end ===== Log: Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 1.8 (2024-06-10) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""/Users/fanyanglv/Library/CloudStorage/OneDrive- > McMasterUniversity/RhsP2 writing/RhsP2 writing/alforld/Toxic plus > NAD/fold_ctdoxin_plus_nad/fold_ctdoxin_plus_nad_model_0.cif"" Chain information for fold_ctdoxin_plus_nad_model_0.cif #1 --- Chain | Description A | . OpenGL version: 4.1 Metal - 88.1 OpenGL renderer: Apple M3 OpenGL vendor: Apple Python: 3.11.4 Locale: UTF-8 Qt version: PyQt6 6.6.1, Qt 6.6.1 Qt runtime version: 6.6.3 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Air Model Identifier: Mac15,12 Model Number: Z1BD000MLLL/A Chip: Apple M3 Total Number of Cores: 8 (4 performance and 4 efficiency) Memory: 16 GB System Firmware Version: 10151.140.19 OS Loader Version: 10151.140.19 Software: System Software Overview: System Version: macOS 14.6.1 (23G93) Kernel Version: Darwin 23.6.0 Time since boot: 39 days, 14 hours, 49 minutes Graphics/Displays: Apple M3: Chipset Model: Apple M3 Type: GPU Bus: Built-In Total Number of Cores: 10 Vendor: Apple (0x106b) Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-in Liquid Retina Display Resolution: 2560 x 1664 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal Installed Packages: alabaster: 0.7.16 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 2.4.1 Babel: 2.15.0 beautifulsoup4: 4.12.3 blockdiag: 3.0.0 blosc2: 2.0.0 build: 1.2.1 certifi: 2023.11.17 cftime: 1.6.4 charset-normalizer: 3.3.2 ChimeraX-AddCharge: 1.5.17 ChimeraX-AddH: 2.2.6 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.5 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.12.7 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.1.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.57.1 ChimeraX-AtomicLibrary: 14.0.6 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.4.6 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.12.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.7 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.4 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.6 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.8 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.3 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2.4 ChimeraX-DiffPlot: 1.0 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.3 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-Label: 1.1.10 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.1.6 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.2 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.1.3 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.7.1 ChimeraX-MedicalToolbar: 1.0.3 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.14.1 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.17 ChimeraX-ModelPanel: 1.5 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.13.5 ChimeraX-PDB: 2.7.5 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.1 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.4.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.2 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.2 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.0.15 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.11.2 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.16.5 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.39.1 ChimeraX-uniprot: 2.3 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.4.3 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.4 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.2 contourpy: 1.2.1 cxservices: 1.2.2 cycler: 0.12.1 Cython: 3.0.10 debugpy: 1.8.1 decorator: 5.1.1 docutils: 0.20.1 executing: 2.0.1 filelock: 3.13.4 fonttools: 4.53.0 funcparserlib: 2.0.0a0 glfw: 2.7.0 grako: 3.16.5 h5py: 3.11.0 html2text: 2024.2.26 idna: 3.7 ihm: 1.0 imagecodecs: 2024.1.1 imagesize: 1.4.1 ipykernel: 6.29.2 ipython: 8.21.0 ipywidgets: 8.1.3 jedi: 0.19.1 jinja2: 3.1.4 jupyter-client: 8.6.0 jupyter-core: 5.7.2 jupyterlab-widgets: 3.0.11 kiwisolver: 1.4.5 line-profiler: 4.1.2 lxml: 5.2.1 lz4: 4.3.3 MarkupSafe: 2.1.5 matplotlib: 3.8.4 matplotlib-inline: 0.1.7 msgpack: 1.0.8 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.10.0 numpy: 1.26.4 openvr: 1.26.701 packaging: 23.2 ParmEd: 4.2.2 parso: 0.8.4 pep517: 0.13.1 pexpect: 4.9.0 pillow: 10.3.0 pip: 24.0 pkginfo: 1.10.0 platformdirs: 4.2.2 prompt-toolkit: 3.0.47 psutil: 5.9.8 ptyprocess: 0.7.0 pure-eval: 0.2.2 py-cpuinfo: 9.0.0 pycollada: 0.8 pydicom: 2.4.4 pygments: 2.17.2 pynmrstar: 3.3.4 pynrrd: 1.0.0 PyOpenGL: 3.1.7 PyOpenGL-accelerate: 3.1.7 pyopenxr: 1.0.3401 pyparsing: 3.1.2 pyproject-hooks: 1.1.0 PyQt6-commercial: 6.6.1 PyQt6-Qt6: 6.6.3 PyQt6-sip: 13.6.0 PyQt6-WebEngine-commercial: 6.6.0 PyQt6-WebEngine-Qt6: 6.6.3 python-dateutil: 2.9.0.post0 pytz: 2024.1 pyzmq: 26.0.3 qtconsole: 5.5.1 QtPy: 2.4.1 RandomWords: 0.4.0 requests: 2.31.0 scipy: 1.13.0 setuptools: 69.5.1 setuptools-scm: 8.0.4 sfftk-rw: 0.8.1 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.5 sphinx: 7.2.6 sphinx-autodoc-typehints: 2.0.1 sphinxcontrib-applehelp: 1.0.8 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.6 sphinxcontrib-htmlhelp: 2.0.5 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.7 sphinxcontrib-serializinghtml: 1.1.10 stack-data: 0.6.3 superqt: 0.6.3 tables: 3.8.0 tcia-utils: 1.5.1 tifffile: 2024.1.30 tinyarray: 1.2.4 tornado: 6.4.1 traitlets: 5.14.2 typing-extensions: 4.12.2 tzdata: 2024.1 urllib3: 2.2.1 wcwidth: 0.2.13 webcolors: 1.13 wheel: 0.43.0 wheel-filename: 1.4.1 widgetsnbextension: 4.0.11 }}} " defect closed normal Window Toolkit duplicate all ChimeraX