id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 1680 Vseries save: No module named 'chimerax.core.commands.parse' matt.akamatsu@… Tom Goddard "{{{ The following bug report has been submitted: Platform: Darwin-18.2.0-x86_64-i386-64bit ChimeraX Version: 0.9 (2019-02-05) Description (Describe the actions that caused this problem to occur here) Log: Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 0.9 (2019-02-05) © 2016-2019 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""/Users/makamats/Documents/3I_LLSM_demo_working/AP2-rpc3 sample day 02 quad filter.sld - Arp2-rpc3 sample 03 dual color.Deskew.tif"" Opened multi-channel map AP2-rpc3 sample day 02 quad filter.sld - Arp2-rpc3 sample 03 dual color.Deskew.tif, 2 channels, grid size 768,1173,91, pixel 0.104,0.104,0.297, shown at step 2, values uint16 > toolshed show '""Volume Viewer""' > hide #!1.1 models > show #!1.1 models > hide #!1.1 models > toolshed show '""Volume Viewer""' > toolshed show '""Basic Actions""' > save /Users/makamats/Desktop/image1.png supersample 3 > close session > open ""/Users/makamats/Documents/3I_LLSM_demo_working/AP2-rpc3 sample day 02 quad filter.sld - Arp2-rpc3 sample 03 dual color timelapse.Deskew.tif"" Opened AP2-rpc3 sample day 02 quad filter.sld - Arp2-rpc3 sample 03 dual color timelapse.Deskew.tif, grid size 1173,768,1, pixel 1, shown at step 1, values uint16 > show target m > view clip false > view clip false > close session > close > open /Users/makamats/Documents/3I_LLSM_demo_working/AP2-rpc3 sample day 02 quad filter.sld - Arp2-rpc3 sample 03 dual color timelapse.Deskew.tif File not found: /Users/makamats/Documents/3I_LLSM_demo_working/AP2-rpc3 > open /Users/makamats/Documents/3I_LLSM_demo_working/analysis/image_sequence/AP2-rpc3*.tif Opened AP2-rpc3 sample day 02 quad filter.sld - Arp2-rpc3 sample 04 dual color fast timelapse.Deskew_box1_t001_z001_c001.tif, grid size 461,274,9300, pixel 1, shown at step 1, values uint16 > view clip false > close > open /Users/makamats/Documents/3I_LLSM_demo_working/analysis/image_sequence/AP2-rpc3*c001.tif Opened AP2-rpc3 sample day 02 quad filter.sld - Arp2-rpc3 sample 04 dual color fast timelapse.Deskew_box1_t001_z001_c001.tif, grid size 461,274,4650, pixel 1, shown at step 1, values uint16 > open /Users/makamats/Documents/3I_LLSM_demo_working/analysis/image_sequence/AP2-rpc3*c002.tif Opened AP2-rpc3 sample day 02 quad filter.sld - Arp2-rpc3 sample 04 dual color fast timelapse.Deskew_box1_t001_z001_c002.tif, grid size 461,274,4650, pixel 1, shown at step 1, values uint16 > show target m > show #1 target m > show #1 target m > close > open /Users/makamats/Documents/3I_LLSM_demo_working/analysis/stack_sequence/Users/makamats/Documents/3I_LLSM_demo_working/analysis/pylattice_testData/10x10x10_developmentData/.h5 File not found: /Users/makamats/Documents/3I_LLSM_demo_working/analysis/stack_sequence/Users/makamats/Documents/3I_LLSM_demo_working/analysis/pylattice_testData/10x10x10_developmentData/.h5 > open /Users/makamats/Documents/3I_LLSM_demo_working/analysis/stack_sequence/myData/.h5 File not found: /Users/makamats/Documents/3I_LLSM_demo_working/analysis/stack_sequence/myData/.h5 Traceback (most recent call last): File ""/private/var/folders/3y/bljtm6zd0wd14g_yc50sjwlw0000gn/T/AppTranslocation/065667D8-43D3-46A5-9556-72D09E050683/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/undo.py"", line 150, in undo inst.undo() File ""/private/var/folders/3y/bljtm6zd0wd14g_yc50sjwlw0000gn/T/AppTranslocation/065667D8-43D3-46A5-9556-72D09E050683/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/undo.py"", line 350, in undo self._update_owner(owner, attribute, old_value, option) File ""/private/var/folders/3y/bljtm6zd0wd14g_yc50sjwlw0000gn/T/AppTranslocation/065667D8-43D3-46A5-9556-72D09E050683/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/undo.py"", line 379, in _update_owner setattr(owner, attribute, value) File ""/private/var/folders/3y/bljtm6zd0wd14g_yc50sjwlw0000gn/T/AppTranslocation/065667D8-43D3-46A5-9556-72D09E050683/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/graphics/drawing.py"", line 228, in __setattr__ super(Drawing, self).__setattr__(key, value) File ""/private/var/folders/3y/bljtm6zd0wd14g_yc50sjwlw0000gn/T/AppTranslocation/065667D8-43D3-46A5-9556-72D09E050683/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/models.py"", line 250, in _set_display Drawing.set_display(self, display) File ""/private/var/folders/3y/bljtm6zd0wd14g_yc50sjwlw0000gn/T/AppTranslocation/065667D8-43D3-46A5-9556-72D09E050683/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/graphics/drawing.py"", line 317, in set_display dp = empty((len(self._positions),), bool) TypeError: object of type 'NoneType' has no len() undo failed: object of type 'NoneType' has no len(): TypeError: object of type 'NoneType' has no len() File ""/private/var/folders/3y/bljtm6zd0wd14g_yc50sjwlw0000gn/T/AppTranslocation/065667D8-43D3-46A5-9556-72D09E050683/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/graphics/drawing.py"", line 317, in set_display dp = empty((len(self._positions),), bool) See log for complete Python traceback. Traceback (most recent call last): File ""/private/var/folders/3y/bljtm6zd0wd14g_yc50sjwlw0000gn/T/AppTranslocation/065667D8-43D3-46A5-9556-72D09E050683/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/undo.py"", line 150, in undo inst.undo() File ""/private/var/folders/3y/bljtm6zd0wd14g_yc50sjwlw0000gn/T/AppTranslocation/065667D8-43D3-46A5-9556-72D09E050683/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/undo.py"", line 350, in undo self._update_owner(owner, attribute, old_value, option) File ""/private/var/folders/3y/bljtm6zd0wd14g_yc50sjwlw0000gn/T/AppTranslocation/065667D8-43D3-46A5-9556-72D09E050683/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/undo.py"", line 379, in _update_owner setattr(owner, attribute, value) File ""/private/var/folders/3y/bljtm6zd0wd14g_yc50sjwlw0000gn/T/AppTranslocation/065667D8-43D3-46A5-9556-72D09E050683/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/graphics/drawing.py"", line 228, in __setattr__ super(Drawing, self).__setattr__(key, value) File ""/private/var/folders/3y/bljtm6zd0wd14g_yc50sjwlw0000gn/T/AppTranslocation/065667D8-43D3-46A5-9556-72D09E050683/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/models.py"", line 250, in _set_display Drawing.set_display(self, display) File ""/private/var/folders/3y/bljtm6zd0wd14g_yc50sjwlw0000gn/T/AppTranslocation/065667D8-43D3-46A5-9556-72D09E050683/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/graphics/drawing.py"", line 317, in set_display dp = empty((len(self._positions),), bool) TypeError: object of type 'NoneType' has no len() undo failed: object of type 'NoneType' has no len(): TypeError: object of type 'NoneType' has no len() File ""/private/var/folders/3y/bljtm6zd0wd14g_yc50sjwlw0000gn/T/AppTranslocation/065667D8-43D3-46A5-9556-72D09E050683/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/graphics/drawing.py"", line 317, in set_display dp = empty((len(self._positions),), bool) See log for complete Python traceback. > open /Users/makamats/Documents/3I_LLSM_demo_working/analysis/stack_sequence/myData:.h5 Traceback (most recent call last): File ""/private/var/folders/3y/bljtm6zd0wd14g_yc50sjwlw0000gn/T/AppTranslocation/065667D8-43D3-46A5-9556-72D09E050683/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/cmd_line/tool.py"", line 252, in execute cmd.run(cmd_text) File ""/private/var/folders/3y/bljtm6zd0wd14g_yc50sjwlw0000gn/T/AppTranslocation/065667D8-43D3-46A5-9556-72D09E050683/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/commands/cli.py"", line 2615, in run result = ci.function(session, **kw_args) File ""/private/var/folders/3y/bljtm6zd0wd14g_yc50sjwlw0000gn/T/AppTranslocation/065667D8-43D3-46A5-9556-72D09E050683/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/commands/open.py"", line 41, in open from_database=from_database, ignore_cache=ignore_cache, **kw)) File ""/private/var/folders/3y/bljtm6zd0wd14g_yc50sjwlw0000gn/T/AppTranslocation/065667D8-43D3-46A5-9556-72D09E050683/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/commands/open.py"", line 117, in open models = handle_unknown_kw(session.models.open, paths, format=format, name=name, **kw) File ""/private/var/folders/3y/bljtm6zd0wd14g_yc50sjwlw0000gn/T/AppTranslocation/065667D8-43D3-46A5-9556-72D09E050683/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/commands/open.py"", line 62, in handle_unknown_kw return f(*args, **kw) File ""/private/var/folders/3y/bljtm6zd0wd14g_yc50sjwlw0000gn/T/AppTranslocation/065667D8-43D3-46A5-9556-72D09E050683/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/models.py"", line 598, in open session, filenames, format=format, name=name, **kw) File ""/private/var/folders/3y/bljtm6zd0wd14g_yc50sjwlw0000gn/T/AppTranslocation/065667D8-43D3-46A5-9556-72D09E050683/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/io.py"", line 467, in open_multiple_data models, status = open_data(session, fspec, format=format, name=name, **kw) File ""/private/var/folders/3y/bljtm6zd0wd14g_yc50sjwlw0000gn/T/AppTranslocation/065667D8-43D3-46A5-9556-72D09E050683/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/io.py"", line 423, in open_data models, status = open_func(*args, **kw) File ""/private/var/folders/3y/bljtm6zd0wd14g_yc50sjwlw0000gn/T/AppTranslocation/065667D8-43D3-46A5-9556-72D09E050683/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/map/volume.py"", line 3474, in open_map_format return open_map(session, stream, name=name, format=format, **kw) File ""/private/var/folders/3y/bljtm6zd0wd14g_yc50sjwlw0000gn/T/AppTranslocation/065667D8-43D3-46A5-9556-72D09E050683/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/map/volume.py"", line 3076, in open_map verbose = kw.get('verbose')) File ""/private/var/folders/3y/bljtm6zd0wd14g_yc50sjwlw0000gn/T/AppTranslocation/065667D8-43D3-46A5-9556-72D09E050683/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/map/data/fileformats.py"", line 151, in open_file data = open_func(apath, **kw) File ""/private/var/folders/3y/bljtm6zd0wd14g_yc50sjwlw0000gn/T/AppTranslocation/065667D8-43D3-46A5-9556-72D09E050683/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/map/data/emanhdf/__init__.py"", line 18, in open return read_eman_hdf5(path) File ""/private/var/folders/3y/bljtm6zd0wd14g_yc50sjwlw0000gn/T/AppTranslocation/065667D8-43D3-46A5-9556-72D09E050683/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/map/data/emanhdf/eman_hdf_grid.py"", line 48, in read_eman_hdf5 d = EMAN_HDF_Data(path) File ""/private/var/folders/3y/bljtm6zd0wd14g_yc50sjwlw0000gn/T/AppTranslocation/065667D8-43D3-46A5-9556-72D09E050683/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/map/data/emanhdf/eman_hdf_format.py"", line 62, in __init__ raise ValueError('EMAN HDF5 file %s contains no arrays' % path) ValueError: EMAN HDF5 file /Users/makamats/Documents/3I_LLSM_demo_working/analysis/stack_sequence/myData:.h5 contains no arrays ValueError: EMAN HDF5 file /Users/makamats/Documents/3I_LLSM_demo_working/analysis/stack_sequence/myData:.h5 contains no arrays File ""/private/var/folders/3y/bljtm6zd0wd14g_yc50sjwlw0000gn/T/AppTranslocation/065667D8-43D3-46A5-9556-72D09E050683/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/map/data/emanhdf/eman_hdf_format.py"", line 62, in __init__ raise ValueError('EMAN HDF5 file %s contains no arrays' % path) See log for complete Python traceback. > open /Users/makamats/Documents/3I_LLSM_demo_working/analysis/stack_sequence/:Users:makamats:Documents:3I_LLSM_demo_working:analysis:pylattice_testData:10x10x10_developmentData:.h5 Traceback (most recent call last): File ""/private/var/folders/3y/bljtm6zd0wd14g_yc50sjwlw0000gn/T/AppTranslocation/065667D8-43D3-46A5-9556-72D09E050683/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/cmd_line/tool.py"", line 252, in execute cmd.run(cmd_text) File ""/private/var/folders/3y/bljtm6zd0wd14g_yc50sjwlw0000gn/T/AppTranslocation/065667D8-43D3-46A5-9556-72D09E050683/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/commands/cli.py"", line 2615, in run result = ci.function(session, **kw_args) File ""/private/var/folders/3y/bljtm6zd0wd14g_yc50sjwlw0000gn/T/AppTranslocation/065667D8-43D3-46A5-9556-72D09E050683/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/commands/open.py"", line 41, in open from_database=from_database, ignore_cache=ignore_cache, **kw)) File ""/private/var/folders/3y/bljtm6zd0wd14g_yc50sjwlw0000gn/T/AppTranslocation/065667D8-43D3-46A5-9556-72D09E050683/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/commands/open.py"", line 117, in open models = handle_unknown_kw(session.models.open, paths, format=format, name=name, **kw) File ""/private/var/folders/3y/bljtm6zd0wd14g_yc50sjwlw0000gn/T/AppTranslocation/065667D8-43D3-46A5-9556-72D09E050683/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/commands/open.py"", line 62, in handle_unknown_kw return f(*args, **kw) File ""/private/var/folders/3y/bljtm6zd0wd14g_yc50sjwlw0000gn/T/AppTranslocation/065667D8-43D3-46A5-9556-72D09E050683/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/models.py"", line 598, in open session, filenames, format=format, name=name, **kw) File ""/private/var/folders/3y/bljtm6zd0wd14g_yc50sjwlw0000gn/T/AppTranslocation/065667D8-43D3-46A5-9556-72D09E050683/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/io.py"", line 467, in open_multiple_data models, status = open_data(session, fspec, format=format, name=name, **kw) File ""/private/var/folders/3y/bljtm6zd0wd14g_yc50sjwlw0000gn/T/AppTranslocation/065667D8-43D3-46A5-9556-72D09E050683/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/io.py"", line 423, in open_data models, status = open_func(*args, **kw) File ""/private/var/folders/3y/bljtm6zd0wd14g_yc50sjwlw0000gn/T/AppTranslocation/065667D8-43D3-46A5-9556-72D09E050683/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/map/volume.py"", line 3474, in open_map_format return open_map(session, stream, name=name, format=format, **kw) File ""/private/var/folders/3y/bljtm6zd0wd14g_yc50sjwlw0000gn/T/AppTranslocation/065667D8-43D3-46A5-9556-72D09E050683/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/map/volume.py"", line 3076, in open_map verbose = kw.get('verbose')) File ""/private/var/folders/3y/bljtm6zd0wd14g_yc50sjwlw0000gn/T/AppTranslocation/065667D8-43D3-46A5-9556-72D09E050683/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/map/data/fileformats.py"", line 151, in open_file data = open_func(apath, **kw) File ""/private/var/folders/3y/bljtm6zd0wd14g_yc50sjwlw0000gn/T/AppTranslocation/065667D8-43D3-46A5-9556-72D09E050683/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/map/data/emanhdf/__init__.py"", line 18, in open return read_eman_hdf5(path) File ""/private/var/folders/3y/bljtm6zd0wd14g_yc50sjwlw0000gn/T/AppTranslocation/065667D8-43D3-46A5-9556-72D09E050683/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/map/data/emanhdf/eman_hdf_grid.py"", line 48, in read_eman_hdf5 d = EMAN_HDF_Data(path) File ""/private/var/folders/3y/bljtm6zd0wd14g_yc50sjwlw0000gn/T/AppTranslocation/065667D8-43D3-46A5-9556-72D09E050683/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/map/data/emanhdf/eman_hdf_format.py"", line 62, in __init__ raise ValueError('EMAN HDF5 file %s contains no arrays' % path) ValueError: EMAN HDF5 file /Users/makamats/Documents/3I_LLSM_demo_working/analysis/stack_sequence/:Users:makamats:Documents:3I_LLSM_demo_working:analysis:pylattice_testData:10x10x10_developmentData:.h5 contains no arrays ValueError: EMAN HDF5 file /Users/makamats/Documents/3I_LLSM_demo_working/analysis/stack_sequence/:Users:makamats:Documents:3I_LLSM_demo_working:analysis:pylattice_testData:10x10x10_developmentData:.h5 contains no arrays File ""/private/var/folders/3y/bljtm6zd0wd14g_yc50sjwlw0000gn/T/AppTranslocation/065667D8-43D3-46A5-9556-72D09E050683/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/map/data/emanhdf/eman_hdf_format.py"", line 62, in __init__ raise ValueError('EMAN HDF5 file %s contains no arrays' % path) See log for complete Python traceback. > close > open /Users/makamats/Documents/3I_LLSM_demo_working/analysis/stack_sequence/C2-AP2-rpc3 sample day 02 quad filter.sld - Arp2-rpc3 sample 04 dual color fast timelapse.Deskew_box1.tif File not found: /Users/makamats/Documents/3I_LLSM_demo_working/analysis/stack_sequence/C2-AP2-rpc3 > open ""/Users/makamats/Documents/3I_LLSM_demo_working/analysis/stack_sequence/C2-AP2-rpc3 sample day 02 quad filter.sld - Arp2-rpc3 sample 04 dual color fast timelapse.Deskew_box1.tif"" Opened map series C2-AP2-rpc3 sample day 02 quad filter.sld - Arp2-rpc3 sample 04 dual color fast timelapse.Deskew_box1.tif, 150 images, grid size 461,274,31, pixel 0.104,0.104,0.297, shown at step 1, values uint16 > close > open ""/Users/makamats/Documents/3I_LLSM_demo_working/AP2-rpc3 sample day 02 quad filter.sld - Arp2-rpc3 sample 04 dual color fast timelapse.Deskew_box1.tif"" Opened multichannel map series AP2-rpc3 sample day 02 quad filter.sld - Arp2-rpc3 sample 04 dual color fast timelapse.Deskew_box1.tif, 2 channels, 150 images per channel, grid size 461,274,31, pixel 0.104,0.104,0.297, shown at step 1, values uint16 Missing or invalid ""series"" argument: invalid map series specifier > vseries save #1 ""'/Users/makamats/Documents/3I_LLSM_demo_working/AP2-rpc3 sample day 02 quad filter.sld - Arp2-rpc3 sample 04 dual color fast timelapse.Deskew_box1_ch0.cmap'"" Traceback (most recent call last): File ""/private/var/folders/3y/bljtm6zd0wd14g_yc50sjwlw0000gn/T/AppTranslocation/065667D8-43D3-46A5-9556-72D09E050683/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/cmd_line/tool.py"", line 252, in execute cmd.run(cmd_text) File ""/private/var/folders/3y/bljtm6zd0wd14g_yc50sjwlw0000gn/T/AppTranslocation/065667D8-43D3-46A5-9556-72D09E050683/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/commands/cli.py"", line 2615, in run result = ci.function(session, **kw_args) File ""/private/var/folders/3y/bljtm6zd0wd14g_yc50sjwlw0000gn/T/AppTranslocation/065667D8-43D3-46A5-9556-72D09E050683/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/map/series/vseries_command.py"", line 183, in vseries_save from chimerax.core.commands.parse import CommandError ModuleNotFoundError: No module named 'chimerax.core.commands.parse' ModuleNotFoundError: No module named 'chimerax.core.commands.parse' File ""/private/var/folders/3y/bljtm6zd0wd14g_yc50sjwlw0000gn/T/AppTranslocation/065667D8-43D3-46A5-9556-72D09E050683/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/map/series/vseries_command.py"", line 183, in vseries_save from chimerax.core.commands.parse import CommandError See log for complete Python traceback. OpenGL version: 4.1 ATI-2.4.9 OpenGL renderer: AMD Radeon Pro 560X OpenGL Engine OpenGL vendor: ATI Technologies Inc. }}} " defect closed normal Volume Data fixed all ChimeraX