![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 10 months ago
Last modified 10 months ago
#16873 closed defect
ChimeraX bug report submission — at Initial Version
| Reported by: | Owned by: | ||
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-14.5-arm64-arm-64bit
ChimeraX Version: 1.8 (2024-06-10 23:15:52 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
{"app_name":"ChimeraX","timestamp":"2025-02-15 22:32:58.00 +0100","app_version":"1.8.0","slice_uuid":"17982d98-65bc-3327-8526-577ec996453c","build_version":"1.8.0.0","platform":1,"bundleID":"edu.ucsf.cgl.ChimeraX","share_with_app_devs":0,"is_first_party":0,"bug_type":"309","os_version":"macOS 14.5 (23F79)","roots_installed":0,"name":"ChimeraX","incident_id":"8269915B-72BC-417A-A2CC-4F267EBF5E75"}
{
"uptime" : 2400000,
"procRole" : "Foreground",
"version" : 2,
"userID" : 502,
"deployVersion" : 210,
"modelCode" : "Mac14,9",
"coalitionID" : 499,
"osVersion" : {
"train" : "macOS 14.5",
"build" : "23F79",
"releaseType" : "User"
},
"captureTime" : "2025-02-15 22:32:35.8883 +0100",
"codeSigningMonitor" : 1,
"incident" : "8269915B-72BC-417A-A2CC-4F267EBF5E75",
"pid" : 19767,
"translated" : false,
"cpuType" : "ARM-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2025-02-15 22:04:28.4544 +0100",
"procStartAbsTime" : 58888803829441,
"procExitAbsTime" : 58929301335870,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.8.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.8.0","CFBundleVersion":"1.8.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"A2049A84-1994-5227-B901-6C299F9170CF","thirdParty":true},
"parentProc" : "bash",
"parentPid" : 1348,
"coalitionName" : "com.apple.Terminal",
"crashReporterKey" : "189C1DB4-80F1-7CA6-FC0C-413800C90FEF",
"responsiblePid" : 466,
"responsibleProc" : "Terminal",
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 4294967295,
"instructionByteStream" : {"beforePC":"fyMD1f17v6n9AwCRW+D\/l78DAJH9e8Go\/w9f1sADX9YQKYDSARAA1A==","atPC":"AwEAVH8jA9X9e7+p\/QMAkVDg\/5e\/AwCR\/XvBqP8PX9bAA1\/WcAqA0g=="},
"wakeTime" : 4688,
"sleepWakeUUID" : "7C563DAD-BB9E-43FF-A96F-3E5665EA2433",
"sip" : "enabled",
"exception" : {"codes":"0x0000000000000000, 0x0000000000000000","rawCodes":[0,0],"type":"EXC_CRASH","signal":"SIGABRT"},
"termination" : {"flags":0,"code":6,"namespace":"SIGNAL","indicator":"Abort trap: 6","byProc":"ChimeraX","byPid":19767},
"asi" : {"libsystem_c.dylib":["abort() called"]},
"exceptionReason" : {"arguments":["-[__NSArrayM objectAtIndexedSubscript:]","220","219"],"format_string":"*** %s: index %lu beyond bounds [0 .. %lu]","name":"NSRangeException","type":"objc-exception","composed_message":"*** -[__NSArrayM objectAtIndexedSubscript:]: index 220 beyond bounds [0 .. 219]","class":"NSException"},
"extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0},
"lastExceptionBacktrace" : [{"imageOffset":996064,"symbol":"__exceptionPreprocess","symbolLocation":164,"imageIndex":160},{"imageOffset":108424,"symbol":"objc_exception_throw","symbolLocation":60,"imageIndex":158},{"imageOffset":432280,"symbol":"-[__NSCFString hasSuffix:]","symbolLocation":0,"imageIndex":160},{"imageOffset":484988,"imageIndex":83},{"imageOffset":753072,"symbol":"-[NSAccessibilityAttributeAccessorInfo getAttributeValue:forObject:]","symbolLocation":60,"imageIndex":159},{"imageOffset":7077552,"symbol":"___NSAccessibilityEntryPointValueForAttribute_block_invoke.759","symbolLocation":1504,"imageIndex":159},{"imageOffset":7059868,"symbol":"NSAccessibilityPerformEntryPointObject","symbolLocation":44,"imageIndex":159},{"imageOffset":2669812,"symbol":"_NSAccessibilityEntryPointValueForAttribute","symbolLocation":224,"imageIndex":159},{"imageOffset":11578812,"symbol":"-[NSWindow(NSWindowAccessibility) accessibilityFocusedUIElement]","symbolLocation":88,"imageIndex":159},{"imageOffset":1099276,"symbol":"NSAccessibilityHandleFocusChangedForce","symbolLocation":136,"imageIndex":159},{"imageOffset":1227672,"symbol":"-[NSWindow _realMakeFirstResponder:]","symbolLocation":724,"imageIndex":159},{"imageOffset":1287336,"symbol":"-[NSWindow _selectFirstKeyView]","symbolLocation":544,"imageIndex":159},{"imageOffset":1284860,"symbol":"-[NSWindow _setUpFirstResponder]","symbolLocation":152,"imageIndex":159},{"imageOffset":1275068,"symbol":"-[NSWindow _doWindowWillBeVisibleAsSheet:]","symbolLocation":108,"imageIndex":159},{"imageOffset":11510080,"symbol":"-[NSWindow _reallyDoOrderWindowAboveOrBelow:]","symbolLocation":1028,"imageIndex":159},{"imageOffset":11513108,"symbol":"-[NSWindow _reallyDoOrderWindow:]","symbolLocation":64,"imageIndex":159},{"imageOffset":11513716,"symbol":"-[NSWindow _doOrderWindow:]","symbolLocation":264,"imageIndex":159},{"imageOffset":1234608,"symbol":"-[NSWindow makeKeyAndOrderFront:]","symbolLocation":40,"imageIndex":159},{"imageOffset":241140,"imageIndex":83},{"imageOffset":832600,"symbol":"QWindowPrivate::setVisible(bool)","symbolLocation":756,"imageIndex":103},{"imageOffset":349200,"symbol":"QWidgetPrivate::show_sys()","symbolLocation":904,"imageIndex":102},{"imageOffset":354784,"symbol":"QWidgetPrivate::show_helper()","symbolLocation":400,"imageIndex":102},{"imageOffset":357884,"symbol":"QWidgetPrivate::setVisible(bool)","symbolLocation":804,"imageIndex":102},{"imageOffset":1167592,"symbol":"sipQDockWidget::setVisible(bool)","symbolLocation":140,"imageIndex":101},{"imageOffset":2637936,"symbol":"meth_QWidget_show(_object*, _object*)","symbolLocation":88,"imageIndex":101},{"imageOffset":1004504,"symbol":"cfunction_call","symbolLocation":96,"imageIndex":151},{"imageOffset":594156,"symbol":"_PyObject_MakeTpCall","symbolLocation":128,"imageIndex":151},{"imageOffset":1789244,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":54984,"imageIndex":151},{"imageOffset":1811404,"symbol":"_PyEval_Vector","symbolLocation":156,"imageIndex":151},{"imageOffset":661780,"symbol":"property_descr_set","symbolLocation":124,"imageIndex":151},{"imageOffset":1039020,"symbol":"_PyObject_GenericSetAttrWithDict","symbolLocation":296,"imageIndex":151},{"imageOffset":1034116,"symbol":"PyObject_SetAttr","symbolLocation":96,"imageIndex":151},{"imageOffset":1754304,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":20044,"imageIndex":151},{"imageOffset":1811404,"symbol":"_PyEval_Vector","symbolLocation":156,"imageIndex":151},{"imageOffset":661780,"symbol":"property_descr_set","symbolLocation":124,"imageIndex":151},{"imageOffset":1039020,"symbol":"_PyObject_GenericSetAttrWithDict","symbolLocation":296,"imageIndex":151},{"imageOffset":1034116,"symbol":"PyObject_SetAttr","symbolLocation":96,"imageIndex":151},{"imageOffset":1754304,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":20044,"imageIndex":151},{"imageOffset":1811404,"symbol":"_PyEval_Vector","symbolLocation":156,"imageIndex":151},{"imageOffset":611268,"symbol":"method_vectorcall","symbolLocation":164,"imageIndex":151},{"imageOffset":1368824,"symbol":"PyQtSlot::call(_object*, _object*) const","symbolLocation":68,"imageIndex":107},{"imageOffset":1368420,"symbol":"PyQtSlot::invoke(void**, _object*, void*, bool) const","symbolLocation":296,"imageIndex":107},{"imageOffset":1372472,"symbol":"PyQtSlotProxy::unislot(void**)","symbolLocation":92,"imageIndex":107},{"imageOffset":1372328,"symbol":"PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**)","symbolLocation":68,"imageIndex":107},{"imageOffset":836112,"imageIndex":108},{"imageOffset":1209072,"symbol":"QComboBox::currentTextChanged(QString const&)","symbolLocation":52,"imageIndex":102},{"imageOffset":836160,"imageIndex":108},{"imageOffset":1483080,"imageIndex":102},{"imageOffset":836776,"imageIndex":108},{"imageOffset":1503348,"symbol":"QWidgetLineControl::finishChange(int, bool, bool)","symbolLocation":556,"imageIndex":102},{"imageOffset":1508140,"symbol":"QWidgetLineControl::internalSetText(QString const&, int, bool)","symbolLocation":728,"imageIndex":102},{"imageOffset":1491652,"imageIndex":102},{"imageOffset":1184868,"imageIndex":102},{"imageOffset":1198364,"imageIndex":102},{"imageOffset":836160,"imageIndex":108},{"imageOffset":1195004,"symbol":"QComboBoxPrivateContainer::eventFilter(QObject*, QEvent*)","symbolLocation":920,"imageIndex":102},{"imageOffset":534308,"symbol":"QCoreApplicationPrivate::sendThroughObjectEventFilters(QObject*, QEvent*)","symbolLocation":244,"imageIndex":108},{"imageOffset":59176,"symbol":"QApplicationPrivate::notify_helper(QObject*, QEvent*)","symbolLocation":240,"imageIndex":102},{"imageOffset":67444,"symbol":"QApplication::notify(QObject*, QEvent*)","symbolLocation":5072,"imageIndex":102},{"imageOffset":1421860,"symbol":"sipQApplication::notify(QObject*, QEvent*)","symbolLocation":248,"imageIndex":101},{"imageOffset":533584,"symbol":"QCoreApplication::notifyInternal2(QObject*, QEvent*)","symbolLocation":292,"imageIndex":108},{"imageOffset":60648,"symbol":"QApplicationPrivate::sendMouseEvent(QWidget*, QMouseEvent*, QWidget*, QWidget*, QWidget**, QPointer&, bool, bool)","symbolLocation":808,"imageIndex":102},{"imageOffset":445928,"imageIndex":102},{"imageOffset":441208,"imageIndex":102},{"imageOffset":59208,"symbol":"QApplicationPrivate::notify_helper(QObject*, QEvent*)","symbolLocation":272,"imageIndex":102},{"imageOffset":62876,"symbol":"QApplication::notify(QObject*, QEvent*)","symbolLocation":504,"imageIndex":102},{"imageOffset":1421860,"symbol":"sipQApplication::notify(QObject*, QEvent*)","symbolLocation":248,"imageIndex":101},{"imageOffset":533584,"symbol":"QCoreApplication::notifyInternal2(QObject*, QEvent*)","symbolLocation":292,"imageIndex":108},{"imageOffset":508820,"symbol":"QGuiApplicationPrivate::processMouseEvent(QWindowSystemInterfacePrivate::MouseEvent*)","symbolLocation":1760,"imageIndex":103},{"imageOffset":884840,"symbol":"QWindowSystemInterface::sendWindowSystemEvents(QFlags)","symbolLocation":408,"imageIndex":103},{"imageOffset":91108,"imageIndex":83},{"imageOffset":517336,"symbol":"__CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__","symbolLocation":28,"imageIndex":160},{"imageOffset":517228,"symbol":"__CFRunLoopDoSource0","symbolLocation":176,"imageIndex":160},{"imageOffset":516572,"symbol":"__CFRunLoopDoSources0","symbolLocation":244,"imageIndex":160},{"imageOffset":511432,"symbol":"__CFRunLoopRun","symbolLocation":828,"imageIndex":160},{"imageOffset":508980,"symbol":"CFRunLoopRunSpecific","symbolLocation":608,"imageIndex":160},{"imageOffset":209308,"symbol":"RunCurrentEventLoopInMode","symbolLocation":292,"imageIndex":161},{"imageOffset":208428,"symbol":"ReceiveNextEventCommon","symbolLocation":220,"imageIndex":161},{"imageOffset":208176,"symbol":"_BlockUntilNextEventMatchingListInModeWithFilter","symbolLocation":76,"imageIndex":161},{"imageOffset":236904,"symbol":"_DPSNextEvent","symbolLocation":660,"imageIndex":159},{"imageOffset":8583176,"symbol":"-[NSApplication(NSEventRouting) _nextEventMatchingEventMask:untilDate:inMode:dequeue:]","symbolLocation":700,"imageIndex":159},{"imageOffset":184476,"symbol":"-[NSApplication run]","symbolLocation":476,"imageIndex":159},{"imageOffset":81772,"imageIndex":83},{"imageOffset":573772,"symbol":"QEventLoop::exec(QFlags)","symbolLocation":540,"imageIndex":108},{"imageOffset":535260,"symbol":"QCoreApplication::exec()","symbolLocation":112,"imageIndex":108},{"imageOffset":2507676,"symbol":"meth_QApplication_exec(_object*, _object*)","symbolLocation":96,"imageIndex":101},{"imageOffset":1004504,"symbol":"cfunction_call","symbolLocation":96,"imageIndex":151},{"imageOffset":594156,"symbol":"_PyObject_MakeTpCall","symbolLocation":128,"imageIndex":151},{"imageOffset":1789244,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":54984,"imageIndex":151},{"imageOffset":1729512,"symbol":"PyEval_EvalCode","symbolLocation":276,"imageIndex":151},{"imageOffset":1707120,"symbol":"builtin_exec","symbolLocation":428,"imageIndex":151},{"imageOffset":1007044,"symbol":"cfunction_vectorcall_FASTCALL_KEYWORDS","symbolLocation":80,"imageIndex":151},{"imageOffset":1788292,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":54032,"imageIndex":151},{"imageOffset":1811404,"symbol":"_PyEval_Vector","symbolLocation":156,"imageIndex":151},{"imageOffset":2389028,"symbol":"pymain_run_module","symbolLocation":256,"imageIndex":151},{"imageOffset":2387652,"symbol":"Py_RunMain","symbolLocation":1784,"imageIndex":151},{"imageOffset":2392180,"symbol":"pymain_main","symbolLocation":52,"imageIndex":151},{"imageOffset":2392116,"symbol":"Py_Main","symbolLocation":36,"imageIndex":151},{"imageOffset":15700,"symbol":"main","symbolLocation":128,"imageIndex":152},{"imageOffset":24800,"symbol":"start","symbolLocation":2360,"imageIndex":162}],
"faultingThread" : 0,
"threads" : [{"threadState":{"x":[{"value":0},{"value":0},{"value":1},{"value":6100264984},{"value":80},{"value":95},{"value":110},{"value":0},{"value":4791282184205574163},{"value":4791282185240128531},{"value":14757395258967641293},{"value":4294967286},{"value":6100264914},{"value":0},{"value":53},{"value":4294967280},{"value":328},{"value":8725813544},{"value":0},{"value":6},{"value":8554155008,"symbolLocation":0,"symbol":"_main_thread"},{"value":259},{"value":8554155232,"symbolLocation":224,"symbol":"_main_thread"},{"value":1},{"value":4389684784,"symbolLocation":0,"symbol":"faulthandler_handlers"},{"value":0},{"value":216},{"value":8559841280,"symbolLocation":24712,"symbol":"getCGDisplayListGetHashSymbolLoc.ptr"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6811184160},"cpsr":{"value":1073745920},"fp":{"value":6100265056},"sp":{"value":6100265024},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6810954336,"matchesCrashFrame":1},"far":{"value":0}},"id":38511393,"triggered":true,"name":"CrBrowserMain","queue":"com.apple.main-thread","frames":[{"imageOffset":39520,"symbol":"__pthread_kill","symbolLocation":8,"imageIndex":153},{"imageOffset":27680,"symbol":"pthread_kill","symbolLocation":288,"imageIndex":154},{"imageOffset":262624,"symbol":"raise","symbolLocation":32,"imageIndex":155},{"imageOffset":2417160,"symbol":"faulthandler_fatal_error","symbolLocation":392,"imageIndex":151},{"imageOffset":17796,"symbol":"_sigtramp","symbolLocation":56,"imageIndex":156},{"imageOffset":27680,"symbol":"pthread_kill","symbolLocation":288,"imageIndex":154},{"imageOffset":485936,"symbol":"abort","symbolLocation":180,"imageIndex":155},{"imageOffset":85256,"symbol":"abort_message","symbolLocation":132,"imageIndex":157},{"imageOffset":20416,"symbol":"demangling_terminate_handler()","symbolLocation":348,"imageIndex":157},{"imageOffset":147920,"symbol":"_objc_terminate()","symbolLocation":144,"imageIndex":158},{"imageOffset":82124,"symbol":"std::__terminate(void (*)())","symbolLocation":16,"imageIndex":157},{"imageOffset":95736,"symbol":"__cxa_rethrow","symbolLocation":204,"imageIndex":157},{"imageOffset":254676,"symbol":"objc_exception_rethrow","symbolLocation":44,"imageIndex":158},{"imageOffset":7059912,"symbol":"NSAccessibilityPerformEntryPointObject","symbolLocation":88,"imageIndex":159},{"imageOffset":2669812,"symbol":"_NSAccessibilityEntryPointValueForAttribute","symbolLocation":224,"imageIndex":159},{"imageOffset":11578812,"symbol":"-[NSWindow(NSWindowAccessibility) accessibilityFocusedUIElement]","symbolLocation":88,"imageIndex":159},{"imageOffset":1099276,"symbol":"NSAccessibilityHandleFocusChangedForce","symbolLocation":136,"imageIndex":159},{"imageOffset":1227672,"symbol":"-[NSWindow _realMakeFirstResponder:]","symbolLocation":724,"imageIndex":159},{"imageOffset":1287336,"symbol":"-[NSWindow _selectFirstKeyView]","symbolLocation":544,"imageIndex":159},{"imageOffset":1284860,"symbol":"-[NSWindow _setUpFirstResponder]","symbolLocation":152,"imageIndex":159},{"imageOffset":1275068,"symbol":"-[NSWindow _doWindowWillBeVisibleAsSheet:]","symbolLocation":108,"imageIndex":159},{"imageOffset":11510080,"symbol":"-[NSWindow _reallyDoOrderWindowAboveOrBelow:]","symbolLocation":1028,"imageIndex":159},{"imageOffset":11513108,"symbol":"-[NSWindow _reallyDoOrderWindow:]","symbolLocation":64,"imageIndex":159},{"imageOffset":11513716,"symbol":"-[NSWindow _doOrderWindow:]","symbolLocation":264,"imageIndex":159},{"imageOffset":1234608,"symbol":"-[NSWindow makeKeyAndOrderFront:]","symbolLocation":40,"imageIndex":159},{"imageOffset":241140,"imageIndex":83},{"imageOffset":832600,"symbol":"QWindowPrivate::setVisible(bool)","symbolLocation":756,"imageIndex":103},{"imageOffset":349200,"symbol":"QWidgetPrivate::show_sys()","symbolLocation":904,"imageIndex":102},{"imageOffset":354784,"symbol":"QWidgetPrivate::show_helper()","symbolLocation":400,"imageIndex":102},{"imageOffset":357884,"symbol":"QWidgetPrivate::setVisible(bool)","symbolLocation":804,"imageIndex":102},{"imageOffset":1167592,"symbol":"sipQDockWidget::setVisible(bool)","symbolLocation":140,"imageIndex":101},{"imageOffset":2637936,"symbol":"meth_QWidget_show(_object*, _object*)","symbolLocation":88,"imageIndex":101},{"imageOffset":1004504,"symbol":"cfunction_call","symbolLocation":96,"imageIndex":151},{"imageOffset":594156,"symbol":"_PyObject_MakeTpCall","symbolLocation":128,"imageIndex":151},{"imageOffset":1789244,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":54984,"imageIndex":151},{"imageOffset":1811404,"symbol":"_PyEval_Vector","symbolLocation":156,"imageIndex":151},{"imageOffset":661780,"symbol":"property_descr_set","symbolLocation":124,"imageIndex":151},{"imageOffset":1039020,"symbol":"_PyObject_GenericSetAttrWithDict","symbolLocation":296,"imageIndex":151},{"imageOffset":1034116,"symbol":"PyObject_SetAttr","symbolLocation":96,"imageIndex":151},{"imageOffset":1754304,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":20044,"imageIndex":151},{"imageOffset":1811404,"symbol":"_PyEval_Vector","symbolLocation":156,"imageIndex":151},{"imageOffset":661780,"symbol":"property_descr_set","symbolLocation":124,"imageIndex":151},{"imageOffset":1039020,"symbol":"_PyObject_GenericSetAttrWithDict","symbolLocation":296,"imageIndex":151},{"imageOffset":1034116,"symbol":"PyObject_SetAttr","symbolLocation":96,"imageIndex":151},{"imageOffset":1754304,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":20044,"imageIndex":151},{"imageOffset":1811404,"symbol":"_PyEval_Vector","symbolLocation":156,"imageIndex":151},{"imageOffset":611268,"symbol":"method_vectorcall","symbolLocation":164,"imageIndex":151},{"imageOffset":1368824,"symbol":"PyQtSlot::call(_object*, _object*) const","symbolLocation":68,"imageIndex":107},{"imageOffset":1368420,"symbol":"PyQtSlot::invoke(void**, _object*, void*, bool) const","symbolLocation":296,"imageIndex":107},{"imageOffset":1372472,"symbol":"PyQtSlotProxy::unislot(void**)","symbolLocation":92,"imageIndex":107},{"imageOffset":1372328,"symbol":"PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**)","symbolLocation":68,"imageIndex":107},{"imageOffset":836112,"imageIndex":108},{"imageOffset":1209072,"symbol":"QComboBox::currentTextChanged(QString const&)","symbolLocation":52,"imageIndex":102},{"imageOffset":836160,"imageIndex":108},{"imageOffset":1483080,"imageIndex":102},{"imageOffset":836776,"imageIndex":108},{"imageOffset":1503348,"symbol":"QWidgetLineControl::finishChange(int, bool, bool)","symbolLocation":556,"imageIndex":102},{"imageOffset":1508140,"symbol":"QWidgetLineControl::internalSetText(QString const&, int, bool)","symbolLocation":728,"imageIndex":102},{"imageOffset":1491652,"imageIndex":102},{"imageOffset":1184868,"imageIndex":102},{"imageOffset":1198364,"imageIndex":102},{"imageOffset":836160,"imageIndex":108},{"imageOffset":1195004,"symbol":"QComboBoxPrivateContainer::eventFilter(QObject*, QEvent*)","symbolLocation":920,"imageIndex":102},{"imageOffset":534308,"symbol":"QCoreApplicationPrivate::sendThroughObjectEventFilters(QObject*, QEvent*)","symbolLocation":244,"imageIndex":108},{"imageOffset":59176,"symbol":"QApplicationPrivate::notify_helper(QObject*, QEvent*)","symbolLocation":240,"imageIndex":102},{"imageOffset":67444,"symbol":"QApplication::notify(QObject*, QEvent*)","symbolLocation":5072,"imageIndex":102},{"imageOffset":1421860,"symbol":"sipQApplication::notify(QObject*, QEvent*)","symbolLocation":248,"imageIndex":101},{"imageOffset":533584,"symbol":"QCoreApplication::notifyInternal2(QObject*, QEvent*)","symbolLocation":292,"imageIndex":108},{"imageOffset":60648,"symbol":"QApplicationPrivate::sendMouseEvent(QWidget*, QMouseEvent*, QWidget*, QWidget*, QWidget**, QPointer&, bool, bool)","symbolLocation":808,"imageIndex":102},{"imageOffset":445928,"imageIndex":102},{"imageOffset":441208,"imageIndex":102},{"imageOffset":59208,"symbol":"QApplicationPrivate::notify_helper(QObject*, QEvent*)","symbolLocation":272,"imageIndex":102},{"imageOffset":62876,"symbol":"QApplication::notify(QObject*, QEvent*)","symbolLocation":504,"imageIndex":102},{"imageOffset":1421860,"symbol":"sipQApplication::notify(QObject*, QEvent*)","symbolLocation":248,"imageIndex":101},{"imageOffset":533584,"symbol":"QCoreApplication::notifyInternal2(QObject*, QEvent*)","symbolLocation":292,"imageIndex":108},{"imageOffset":508820,"symbol":"QGuiApplicationPrivate::processMouseEvent(QWindowSystemInterfacePrivate::MouseEvent*)","symbolLocation":1760,"imageIndex":103},{"imageOffset":884840,"symbol":"QWindowSystemInterface::sendWindowSystemEvents(QFlags)","symbolLocation":408,"imageIndex":103},{"imageOffset":91108,"imageIndex":83},{"imageOffset":517336,"symbol":"__CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__","symbolLocation":28,"imageIndex":160},{"imageOffset":517228,"symbol":"__CFRunLoopDoSource0","symbolLocation":176,"imageIndex":160},{"imageOffset":516572,"symbol":"__CFRunLoopDoSources0","symbolLocation":244,"imageIndex":160},{"imageOffset":511432,"symbol":"__CFRunLoopRun","symbolLocation":828,"imageIndex":160},{"imageOffset":508980,"symbol":"CFRunLoopRunSpecific","symbolLocation":608,"imageIndex":160},{"imageOffset":209308,"symbol":"RunCurrentEventLoopInMode","symbolLocation":292,"imageIndex":161},{"imageOffset":208428,"symbol":"ReceiveNextEventCommon","symbolLocation":220,"imageIndex":161},{"imageOffset":208176,"symbol":"_BlockUntilNextEventMatchingListInModeWithFilter","symbolLocation":76,"imageIndex":161},{"imageOffset":236904,"symbol":"_DPSNextEvent","symbolLocation":660,"imageIndex":159},{"imageOffset":8583176,"symbol":"-[NSApplication(NSEventRouting) _nextEventMatchingEventMask:untilDate:inMode:dequeue:]","symbolLocation":700,"imageIndex":159},{"imageOffset":184476,"symbol":"-[NSApplication run]","symbolLocation":476,"imageIndex":159},{"imageOffset":81772,"imageIndex":83},{"imageOffset":573772,"symbol":"QEventLoop::exec(QFlags)","symbolLocation":540,"imageIndex":108},{"imageOffset":535260,"symbol":"QCoreApplication::exec()","symbolLocation":112,"imageIndex":108},{"imageOffset":2507676,"symbol":"meth_QApplication_exec(_object*, _object*)","symbolLocation":96,"imageIndex":101},{"imageOffset":1004504,"symbol":"cfunction_call","symbolLocation":96,"imageIndex":151},{"imageOffset":594156,"symbol":"_PyObject_MakeTpCall","symbolLocation":128,"imageIndex":151},{"imageOffset":1789244,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":54984,"imageIndex":151},{"imageOffset":1729512,"symbol":"PyEval_EvalCode","symbolLocation":276,"imageIndex":151},{"imageOffset":1707120,"symbol":"builtin_exec","symbolLocation":428,"imageIndex":151},{"imageOffset":1007044,"symbol":"cfunction_vectorcall_FASTCALL_KEYWORDS","symbolLocation":80,"imageIndex":151},{"imageOffset":1788292,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":54032,"imageIndex":151},{"imageOffset":1811404,"symbol":"_PyEval_Vector","symbolLocation":156,"imageIndex":151},{"imageOffset":2389028,"symbol":"pymain_run_module","symbolLocation":256,"imageIndex":151},{"imageOffset":2387652,"symbol":"Py_RunMain","symbolLocation":1784,"imageIndex":151},{"imageOffset":2392180,"symbol":"pymain_main","symbolLocation":52,"imageIndex":151},{"imageOffset":2392116,"symbol":"Py_Main","symbolLocation":36,"imageIndex":151},{"imageOffset":15700,"symbol":"main","symbolLocation":128,"imageIndex":152},{"imageOffset":24800,"symbol":"start","symbolLocation":2360,"imageIndex":162}]},{"id":38511447,"name":"ThreadPoolServiceThread","threadState":{"x":[{"value":4},{"value":0},{"value":0},{"value":105553136567808},{"value":4},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":3},{"value":1099511628034},{"value":13429131936},{"value":63235},{"value":1},{"value":1},{"value":369},{"value":6117863424},{"value":0},{"value":5264549720},{"value":5593758944},{"value":0},{"value":6117862736},{"value":12297829382473034411},{"value":1},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":13322475960},"cpsr":{"value":2684358656},"fp":{"value":6117862720},"sp":{"value":6117862656},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6810968396},"far":{"value":0}},"frames":[{"imageOffset":53580,"symbol":"kevent64","symbolLocation":8,"imageIndex":153},{"imageOffset":66705848,"imageIndex":91},{"imageOffset":66705328,"imageIndex":91},{"imageOffset":66336288,"imageIndex":91},{"imageOffset":66064512,"imageIndex":91},{"imageOffset":66483648,"imageIndex":91},{"imageOffset":66384288,"imageIndex":91},{"imageOffset":66484032,"imageIndex":91},{"imageOffset":66589352,"imageIndex":91},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":154},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":154}]},{"id":38511448,"name":"ThreadPoolForegroundWorker","threadState":{"x":[{"value":268451845},{"value":17179869442},{"value":0},{"value":195725954646016},{"value":0},{"value":195725954646016},{"value":32},{"value":33000},{"value":18446744073709550527},{"value":45571},{"value":0},{"value":1},{"value":45571},{"value":0},{"value":2043},{"value":3989221596},{"value":18446744073709551569},{"value":8725816136},{"value":0},{"value":33000},{"value":32},{"value":195725954646016},{"value":0},{"value":195725954646016},{"value":6126284048},{"value":0},{"value":17179870466},{"value":17179869442},{"value":1282}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6810995492},"cpsr":{"value":4096},"fp":{"value":6126283392},"sp":{"value":6126283312},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6810919412},"far":{"value":0}},"frames":[{"imageOffset":4596,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":153},{"imageOffset":80676,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":153},{"imageOffset":40500,"symbol":"mach_msg_overwrite","symbolLocation":476,"imageIndex":153},{"imageOffset":5496,"symbol":"mach_msg","symbolLocation":24,"imageIndex":153},{"imageOffset":66741424,"imageIndex":91},{"imageOffset":66197236,"imageIndex":91},{"imageOffset":66429892,"imageIndex":91},{"imageOffset":66433464,"imageIndex":91},{"imageOffset":66432016,"imageIndex":91},{"imageOffset":66431744,"imageIndex":91},{"imageOffset":66589352,"imageIndex":91},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":154},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":154}]},{"id":38511449,"name":"ThreadPoolBackgroundWorker","threadState":{"x":[{"value":268451845},{"value":17179869442},{"value":0},{"value":196825466273792},{"value":0},{"value":196825466273792},{"value":32},{"value":33000},{"value":18446744073709550527},{"value":45827},{"value":0},{"value":1},{"value":45827},{"value":0},{"value":2043},{"value":2773080160},{"value":18446744073709551569},{"value":8725816136},{"value":0},{"value":33000},{"value":32},{"value":196825466273792},{"value":0},{"value":196825466273792},{"value":6134705424},{"value":0},{"value":17179870466},{"value":17179869442},{"value":1282}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6810995492},"cpsr":{"value":4096},"fp":{"value":6134704768},"sp":{"value":6134704688},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6810919412},"far":{"value":0}},"frames":[{"imageOffset":4596,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":153},{"imageOffset":80676,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":153},{"imageOffset":40500,"symbol":"mach_msg_overwrite","symbolLocation":476,"imageIndex":153},{"imageOffset":5496,"symbol":"mach_msg","symbolLocation":24,"imageIndex":153},{"imageOffset":66741424,"imageIndex":91},{"imageOffset":66197236,"imageIndex":91},{"imageOffset":66429892,"imageIndex":91},{"imageOffset":66433464,"imageIndex":91},{"imageOffset":66431884,"imageIndex":91},{"imageOffset":66431792,"imageIndex":91},{"imageOffset":66589352,"imageIndex":91},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":154},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":154}]},{"id":38511450,"name":"Chrome_IOThread","threadState":{"x":[{"value":4},{"value":0},{"value":0},{"value":105553136223936},{"value":3},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":9223372036854775809},{"value":13429131984},{"value":61187},{"value":1},{"value":1},{"value":369},{"value":6143127552},{"value":0},{"value":5264541656},{"value":5088644784},{"value":0},{"value":6143126848},{"value":12297829382473034411},{"value":1},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":13322475960},"cpsr":{"value":1610616832},"fp":{"value":6143126832},"sp":{"value":6143126768},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6810968396},"far":{"value":0}},"frames":[{"imageOffset":53580,"symbol":"kevent64","symbolLocation":8,"imageIndex":153},{"imageOffset":66705848,"imageIndex":91},{"imageOffset":66705328,"imageIndex":91},{"imageOffset":66336288,"imageIndex":91},{"imageOffset":66064512,"imageIndex":91},{"imageOffset":66483648,"imageIndex":91},{"imageOffset":42148336,"imageIndex":91},{"imageOffset":66484032,"imageIndex":91},{"imageOffset":66589352,"imageIndex":91},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":154},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":154}]},{"id":38511451,"name":"NetworkConfigWatcher","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":258398117429248},{"value":0},{"value":258398117429248},{"value":32},{"value":0},{"value":18446744073709550527},{"value":60163},{"value":0},{"value":1},{"value":60163},{"value":48131},{"value":1},{"value":1},{"value":18446744073709551569},{"value":6151548928},{"value":0},{"value":0},{"value":32},{"value":258398117429248},{"value":0},{"value":258398117429248},{"value":6151547984},{"value":0},{"value":17179869186},{"value":17179869186},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6810995492},"cpsr":{"value":4096},"fp":{"value":6151547328},"sp":{"value":6151547248},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6810919412},"far":{"value":0}},"frames":[{"imageOffset":4596,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":153},{"imageOffset":80676,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":153},{"imageOffset":40500,"symbol":"mach_msg_overwrite","symbolLocation":476,"imageIndex":153},{"imageOffset":5496,"symbol":"mach_msg","symbolLocation":24,"imageIndex":153},{"imageOffset":66741424,"imageIndex":91},{"imageOffset":66197236,"imageIndex":91},{"imageOffset":66197084,"imageIndex":91},{"imageOffset":65870644,"imageIndex":91},{"imageOffset":66336288,"imageIndex":91},{"imageOffset":66064512,"imageIndex":91},{"imageOffset":66483648,"imageIndex":91},{"imageOffset":66484032,"imageIndex":91},{"imageOffset":66589352,"imageIndex":91},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":154},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":154}]},{"id":38511456,"name":"Chrome_InProcGpuThread","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":248502512779264},{"value":0},{"value":248502512779264},{"value":32},{"value":0},{"value":18446744073709550527},{"value":57859},{"value":0},{"value":1},{"value":57859},{"value":58115},{"value":1},{"value":1},{"value":18446744073709551569},{"value":6333476864},{"value":0},{"value":0},{"value":32},{"value":248502512779264},{"value":0},{"value":248502512779264},{"value":6333475920},{"value":0},{"value":17179869186},{"value":17179869186},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6810995492},"cpsr":{"value":4096},"fp":{"value":6333475264},"sp":{"value":6333475184},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6810919412},"far":{"value":0}},"frames":[{"imageOffset":4596,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":153},{"imageOffset":80676,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":153},{"imageOffset":40500,"symbol":"mach_msg_overwrite","symbolLocation":476,"imageIndex":153},{"imageOffset":5496,"symbol":"mach_msg","symbolLocation":24,"imageIndex":153},{"imageOffset":66741424,"imageIndex":91},{"imageOffset":66197236,"imageIndex":91},{"imageOffset":66197084,"imageIndex":91},{"imageOffset":65870644,"imageIndex":91},{"imageOffset":66336288,"imageIndex":91},{"imageOffset":66064512,"imageIndex":91},{"imageOffset":66483648,"imageIndex":91},{"imageOffset":66484032,"imageIndex":91},{"imageOffset":66589352,"imageIndex":91},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":154},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":154}]},{"id":38511457,"name":"Chrome_ChildIOThread","threadState":{"x":[{"value":4},{"value":0},{"value":0},{"value":105553158706144},{"value":1},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":1},{"value":5497558140162},{"value":13429132080},{"value":56835},{"value":1},{"value":1},{"value":369},{"value":6341898240},{"value":0},{"value":5277533464},{"value":5593695392},{"value":0},{"value":6341897536},{"value":12297829382473034411},{"value":1},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":13322475960},"cpsr":{"value":2684358656},"fp":{"value":6341897520},"sp":{"value":6341897456},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6810968396},"far":{"value":0}},"frames":[{"imageOffset":53580,"symbol":"kevent64","symbolLocation":8,"imageIndex":153},{"imageOffset":66705848,"imageIndex":91},{"imageOffset":66705328,"imageIndex":91},{"imageOffset":66336288,"imageIndex":91},{"imageOffset":66064512,"imageIndex":91},{"imageOffset":66483648,"imageIndex":91},{"imageOffset":107949588,"imageIndex":91},{"imageOffset":66484032,"imageIndex":91},{"imageOffset":66589352,"imageIndex":91},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":154},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":154}]},{"id":38511458,"name":"CompositorTileWorker1","threadState":{"x":[{"value":260},{"value":0},{"value":512},{"value":0},{"value":0},{"value":161},{"value":0},{"value":0},{"value":6350319192},{"value":0},{"value":5264584032},{"value":2},{"value":0},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8725813472},{"value":0},{"value":5264584008},{"value":5264584136},{"value":6350319840},{"value":0},{"value":0},{"value":512},{"value":513},{"value":768},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6811186524},"cpsr":{"value":1610616832},"fp":{"value":6350319312},"sp":{"value":6350319168},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6810933740},"far":{"value":0}},"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":153},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":154},{"imageOffset":66586532,"imageIndex":91},{"imageOffset":99447652,"imageIndex":91},{"imageOffset":66589352,"imageIndex":91},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":154},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":154}]},{"id":38511459,"name":"ThreadPoolSingleThreadSharedForeground0","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":223213745340416},{"value":0},{"value":223213745340416},{"value":32},{"value":0},{"value":18446744073709550527},{"value":51971},{"value":0},{"value":1},{"value":51971},{"value":2045},{"value":3550556490},{"value":330},{"value":18446744073709551569},{"value":77824},{"value":0},{"value":0},{"value":32},{"value":223213745340416},{"value":0},{"value":223213745340416},{"value":6358740240},{"value":0},{"value":17179869186},{"value":17179869186},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6810995492},"cpsr":{"value":4096},"fp":{"value":6358739584},"sp":{"value":6358739504},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6810919412},"far":{"value":0}},"frames":[{"imageOffset":4596,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":153},{"imageOffset":80676,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":153},{"imageOffset":40500,"symbol":"mach_msg_overwrite","symbolLocation":476,"imageIndex":153},{"imageOffset":5496,"symbol":"mach_msg","symbolLocation":24,"imageIndex":153},{"imageOffset":66741424,"imageIndex":91},{"imageOffset":66197236,"imageIndex":91},{"imageOffset":66429892,"imageIndex":91},{"imageOffset":66432404,"imageIndex":91},{"imageOffset":66432060,"imageIndex":91},{"imageOffset":66431816,"imageIndex":91},{"imageOffset":66589352,"imageIndex":91},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":154},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":154}]},{"id":38511460,"name":"NetworkConfigWatcher","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":232009838362624},{"value":0},{"value":232009838362624},{"value":32},{"value":0},{"value":18446744073709550527},{"value":54019},{"value":0},{"value":1},{"value":54019},{"value":53763},{"value":1},{"value":1},{"value":18446744073709551569},{"value":6367162368},{"value":0},{"value":0},{"value":32},{"value":232009838362624},{"value":0},{"value":232009838362624},{"value":6367161424},{"value":0},{"value":17179869186},{"value":17179869186},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6810995492},"cpsr":{"value":4096},"fp":{"value":6367160768},"sp":{"value":6367160688},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6810919412},"far":{"value":0}},"frames":[{"imageOffset":4596,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":153},{"imageOffset":80676,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":153},{"imageOffset":40500,"symbol":"mach_msg_overwrite","symbolLocation":476,"imageIndex":153},{"imageOffset":5496,"symbol":"mach_msg","symbolLocation":24,"imageIndex":153},{"imageOffset":66741424,"imageIndex":91},{"imageOffset":66197236,"imageIndex":91},{"imageOffset":66197084,"imageIndex":91},{"imageOffset":65870644,"imageIndex":91},{"imageOffset":66336288,"imageIndex":91},{"imageOffset":66064512,"imageIndex":91},{"imageOffset":66483648,"imageIndex":91},{"imageOffset":66484032,"imageIndex":91},{"imageOffset":66589352,"imageIndex":91},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":154},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":154}]},{"id":38511461,"name":"VizCompositorThread","threadState":{"x":[{"value":268451845},{"value":17179869442},{"value":0},{"value":372747326717952},{"value":0},{"value":372747326717952},{"value":32},{"value":14},{"value":18446744073709550527},{"value":86787},{"value":0},{"value":1},{"value":86787},{"value":66307},{"value":1},{"value":1},{"value":18446744073709551569},{"value":6375583744},{"value":0},{"value":14},{"value":32},{"value":372747326717952},{"value":0},{"value":372747326717952},{"value":6375582816},{"value":0},{"value":17179870466},{"value":17179869442},{"value":1282}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6810995492},"cpsr":{"value":4096},"fp":{"value":6375582160},"sp":{"value":6375582080},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6810919412},"far":{"value":0}},"frames":[{"imageOffset":4596,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":153},{"imageOffset":80676,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":153},{"imageOffset":40500,"symbol":"mach_msg_overwrite","symbolLocation":476,"imageIndex":153},{"imageOffset":5496,"symbol":"mach_msg","symbolLocation":24,"imageIndex":153},{"imageOffset":66741424,"imageIndex":91},{"imageOffset":66197236,"imageIndex":91},{"imageOffset":65870544,"imageIndex":91},{"imageOffset":66336288,"imageIndex":91},{"imageOffset":66064512,"imageIndex":91},{"imageOffset":66483648,"imageIndex":91},{"imageOffset":66484032,"imageIndex":91},{"imageOffset":66589352,"imageIndex":91},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":154},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":154}]},{"id":38511462,"name":"NetworkService","threadState":{"x":[{"value":4},{"value":0},{"value":0},{"value":105553118430624},{"value":2},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":2},{"value":5497558140162},{"value":13429132272},{"value":86019},{"value":1},{"value":1},{"value":369},{"value":6384005120},{"value":0},{"value":5302894968},{"value":5088140240},{"value":0},{"value":6384004464},{"value":12297829382473034411},{"value":1},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":13322475960},"cpsr":{"value":2684358656},"fp":{"value":6384004448},"sp":{"value":6384004384},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6810968396},"far":{"value":0}},"frames":[{"imageOffset":53580,"symbol":"kevent64","symbolLocation":8,"imageIndex":153},{"imageOffset":66705848,"imageIndex":91},{"imageOffset":66705328,"imageIndex":91},{"imageOffset":66336288,"imageIndex":91},{"imageOffset":66064512,"imageIndex":91},{"imageOffset":66483648,"imageIndex":91},{"imageOffset":66484032,"imageIndex":91},{"imageOffset":66589352,"imageIndex":91},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":154},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":154}]},{"id":38511463,"name":"NetworkConfigWatcher","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":365050745323520},{"value":0},{"value":365050745323520},{"value":32},{"value":0},{"value":18446744073709550527},{"value":84995},{"value":0},{"value":1},{"value":84995},{"value":85251},{"value":1},{"value":1},{"value":18446744073709551569},{"value":6392426496},{"value":0},{"value":0},{"value":32},{"value":365050745323520},{"value":0},{"value":365050745323520},{"value":6392425552},{"value":0},{"value":17179869186},{"value":17179869186},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6810995492},"cpsr":{"value":4096},"fp":{"value":6392424896},"sp":{"value":6392424816},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6810919412},"far":{"value":0}},"frames":[{"imageOffset":4596,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":153},{"imageOffset":80676,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":153},{"imageOffset":40500,"symbol":"mach_msg_overwrite","symbolLocation":476,"imageIndex":153},{"imageOffset":5496,"symbol":"mach_msg","symbolLocation":24,"imageIndex":153},{"imageOffset":66741424,"imageIndex":91},{"imageOffset":66197236,"imageIndex":91},{"imageOffset":66197084,"imageIndex":91},{"imageOffset":65870644,"imageIndex":91},{"imageOffset":66336288,"imageIndex":91},{"imageOffset":66064512,"imageIndex":91},{"imageOffset":66483648,"imageIndex":91},{"imageOffset":66484032,"imageIndex":91},{"imageOffset":66589352,"imageIndex":91},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":154},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":154}]},{"id":38511464,"name":"ThreadPoolSingleThreadForegroundBlocking1","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":360652698812416},{"value":0},{"value":360652698812416},{"value":32},{"value":0},{"value":18446744073709550527},{"value":83971},{"value":0},{"value":1},{"value":83971},{"value":0},{"value":72057602592209393,"symbolLocation":72057594037927937,"symbol":"OBJC_CLASS_$_NSAutoreleasePool"},{"value":8554281456,"symbolLocation":0,"symbol":"OBJC_CLASS_$_NSAutoreleasePool"},{"value":18446744073709551569},{"value":8726176808},{"value":0},{"value":0},{"value":32},{"value":360652698812416},{"value":0},{"value":360652698812416},{"value":6400847120},{"value":0},{"value":17179869186},{"value":17179869186},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6810995492},"cpsr":{"value":4096},"fp":{"value":6400846464},"sp":{"value":6400846384},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6810919412},"far":{"value":0}},"frames":[{"imageOffset":4596,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":153},{"imageOffset":80676,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":153},{"imageOffset":40500,"symbol":"mach_msg_overwrite","symbolLocation":476,"imageIndex":153},{"imageOffset":5496,"symbol":"mach_msg","symbolLocation":24,"imageIndex":153},{"imageOffset":66741424,"imageIndex":91},{"imageOffset":66197236,"imageIndex":91},{"imageOffset":66429892,"imageIndex":91},{"imageOffset":66433464,"imageIndex":91},{"imageOffset":66432104,"imageIndex":91},{"imageOffset":66431804,"imageIndex":91},{"imageOffset":66589352,"imageIndex":91},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":154},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":154}]},{"id":38511481,"name":"NetworkConfigWatcher","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":317771745329152},{"value":0},{"value":317771745329152},{"value":32},{"value":0},{"value":18446744073709550527},{"value":73987},{"value":0},{"value":1},{"value":73987},{"value":73731},{"value":1},{"value":1},{"value":18446744073709551569},{"value":6441857024},{"value":0},{"value":0},{"value":32},{"value":317771745329152},{"value":0},{"value":317771745329152},{"value":6441856080},{"value":0},{"value":17179869186},{"value":17179869186},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6810995492},"cpsr":{"value":4096},"fp":{"value":6441855424},"sp":{"value":6441855344},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6810919412},"far":{"value":0}},"frames":[{"imageOffset":4596,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":153},{"imageOffset":80676,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":153},{"imageOffset":40500,"symbol":"mach_msg_overwrite","symbolLocation":476,"imageIndex":153},{"imageOffset":5496,"symbol":"mach_msg","symbolLocation":24,"imageIndex":153},{"imageOffset":66741424,"imageIndex":91},{"imageOffset":66197236,"imageIndex":91},{"imageOffset":66197084,"imageIndex":91},{"imageOffset":65870644,"imageIndex":91},{"imageOffset":66336288,"imageIndex":91},{"imageOffset":66064512,"imageIndex":91},{"imageOffset":66483648,"imageIndex":91},{"imageOffset":66484032,"imageIndex":91},{"imageOffset":66589352,"imageIndex":91},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":154},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":154}]},{"id":38511509,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":153},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":154},{"imageOffset":1502040,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":131},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":154},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":154}],"threadState":{"x":[{"value":260},{"value":0},{"value":20224},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":6100840136},{"value":0},{"value":4506853416,"symbolLocation":40,"symbol":"thread_status"},{"value":2},{"value":0},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8725813472},{"value":0},{"value":4506853392,"symbolLocation":16,"symbol":"thread_status"},{"value":4506853456,"symbolLocation":80,"symbol":"thread_status"},{"value":6100840672},{"value":0},{"value":0},{"value":20224},{"value":20225},{"value":20480},{"value":4506767360,"symbolLocation":16,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6811186524},"cpsr":{"value":1610616832},"fp":{"value":6100840256},"sp":{"value":6100840112},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6810933740},"far":{"value":0}}},{"id":38511510,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":153},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":154},{"imageOffset":1502040,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":131},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":154},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":154}],"threadState":{"x":[{"value":260},{"value":0},{"value":20224},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":6101413576},{"value":0},{"value":4506853544,"symbolLocation":168,"symbol":"thread_status"},{"value":2},{"value":0},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8725813472},{"value":0},{"value":4506853520,"symbolLocation":144,"symbol":"thread_status"},{"value":4506853584,"symbolLocation":208,"symbol":"thread_status"},{"value":6101414112},{"value":0},{"value":0},{"value":20224},{"value":20225},{"value":20480},{"value":4506767360,"symbolLocation":16,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6811186524},"cpsr":{"value":1610616832},"fp":{"value":6101413696},"sp":{"value":6101413552},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6810933740},"far":{"value":0}}},{"id":38511511,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":153},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":154},{"imageOffset":1502040,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":131},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":154},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":154}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":6101987016},{"value":0},{"value":4506853672,"symbolLocation":296,"symbol":"thread_status"},{"value":2},{"value":0},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8725813472},{"value":0},{"value":4506853648,"symbolLocation":272,"symbol":"thread_status"},{"value":4506853712,"symbolLocation":336,"symbol":"thread_status"},{"value":6101987552},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":4506767360,"symbolLocation":16,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6811186524},"cpsr":{"value":1610616832},"fp":{"value":6101987136},"sp":{"value":6101986992},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6810933740},"far":{"value":0}}},{"id":38511512,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":153},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":154},{"imageOffset":1502040,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":131},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":154},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":154}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":6102560456},{"value":0},{"value":4506853800,"symbolLocation":424,"symbol":"thread_status"},{"value":2},{"value":0},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8725813472},{"value":0},{"value":4506853776,"symbolLocation":400,"symbol":"thread_status"},{"value":4506853840,"symbolLocation":464,"symbol":"thread_status"},{"value":6102560992},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":4506767360,"symbolLocation":16,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6811186524},"cpsr":{"value":1610616832},"fp":{"value":6102560576},"sp":{"value":6102560432},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6810933740},"far":{"value":0}}},{"id":38511513,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":153},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":154},{"imageOffset":1502040,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":131},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":154},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":154}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":6103133896},{"value":0},{"value":4506853928,"symbolLocation":552,"symbol":"thread_status"},{"value":2},{"value":0},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8725813472},{"value":0},{"value":4506853904,"symbolLocation":528,"symbol":"thread_status"},{"value":4506853968,"symbolLocation":592,"symbol":"thread_status"},{"value":6103134432},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":4506767360,"symbolLocation":16,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6811186524},"cpsr":{"value":1610616832},"fp":{"value":6103134016},"sp":{"value":6103133872},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6810933740},"far":{"value":0}}},{"id":38511514,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":153},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":154},{"imageOffset":1502040,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":131},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":154},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":154}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":6103707336},{"value":0},{"value":4506854056,"symbolLocation":680,"symbol":"thread_status"},{"value":2},{"value":0},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8725813472},{"value":0},{"value":4506854032,"symbolLocation":656,"symbol":"thread_status"},{"value":4506854096,"symbolLocation":720,"symbol":"thread_status"},{"value":6103707872},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":4506767360,"symbolLocation":16,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6811186524},"cpsr":{"value":1610616832},"fp":{"value":6103707456},"sp":{"value":6103707312},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6810933740},"far":{"value":0}}},{"id":38511515,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":153},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":154},{"imageOffset":1502040,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":131},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":154},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":154}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":6104280776},{"value":0},{"value":4506854184,"symbolLocation":808,"symbol":"thread_status"},{"value":2},{"value":0},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8725813472},{"value":0},{"value":4506854160,"symbolLocation":784,"symbol":"thread_status"},{"value":4506854224,"symbolLocation":848,"symbol":"thread_status"},{"value":6104281312},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":4506767360,"symbolLocation":16,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6811186524},"cpsr":{"value":1610616832},"fp":{"value":6104280896},"sp":{"value":6104280752},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6810933740},"far":{"value":0}}},{"id":38511516,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":153},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":154},{"imageOffset":1502040,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":131},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":154},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":154}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":6104854216},{"value":0},{"value":4506854312,"symbolLocation":936,"symbol":"thread_status"},{"value":2},{"value":0},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8725813472},{"value":0},{"value":4506854288,"symbolLocation":912,"symbol":"thread_status"},{"value":4506854352,"symbolLocation":976,"symbol":"thread_status"},{"value":6104854752},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":4506767360,"symbolLocation":16,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6811186524},"cpsr":{"value":1610616832},"fp":{"value":6104854336},"sp":{"value":6104854192},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6810933740},"far":{"value":0}}},{"id":38511517,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":153},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":154},{"imageOffset":1502040,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":131},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":154},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":154}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":6105427656},{"value":0},{"value":4506854440,"symbolLocation":1064,"symbol":"thread_status"},{"value":2},{"value":0},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8725813472},{"value":0},{"value":4506854416,"symbolLocation":1040,"symbol":"thread_status"},{"value":4506854480,"symbolLocation":1104,"symbol":"thread_status"},{"value":6105428192},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":4506767360,"symbolLocation":16,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6811186524},"cpsr":{"value":1610616832},"fp":{"value":6105427776},"sp":{"value":6105427632},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6810933740},"far":{"value":0}}},{"id":38511539,"name":"com.apple.NSEventThread","threadState":{"x":[{"value":268451845},{"value":21592279046},{"value":8589934592,"symbolLocation":120,"symbol":"_OBJC_$_INSTANCE_VARIABLES_AMSPushRegisterTask"},{"value":533276024373248},{"value":0},{"value":533276024373248},{"value":2},{"value":4294967295},{"value":18446744073709550527},{"value":124163},{"value":0},{"value":1},{"value":124163},{"value":93615},{"value":0},{"value":0},{"value":18446744073709551569},{"value":8725797632},{"value":0},{"value":4294967295},{"value":2},{"value":533276024373248},{"value":0},{"value":533276024373248},{"value":13230579816},{"value":8589934592,"symbolLocation":120,"symbol":"_OBJC_$_INSTANCE_VARIABLES_AMSPushRegisterTask"},{"value":21592279046},{"value":21592279046},{"value":4412409862}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6810995492},"cpsr":{"value":4096},"fp":{"value":13230579664},"sp":{"value":13230579584},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6810919412},"far":{"value":0}},"frames":[{"imageOffset":4596,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":153},{"imageOffset":80676,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":153},{"imageOffset":40500,"symbol":"mach_msg_overwrite","symbolLocation":476,"imageIndex":153},{"imageOffset":5496,"symbol":"mach_msg","symbolLocation":24,"imageIndex":153},{"imageOffset":517760,"symbol":"__CFRunLoopServiceMachPort","symbolLocation":160,"imageIndex":160},{"imageOffset":511812,"symbol":"__CFRunLoopRun","symbolLocation":1208,"imageIndex":160},{"imageOffset":508980,"symbol":"CFRunLoopRunSpecific","symbolLocation":608,"imageIndex":160},{"imageOffset":1458568,"symbol":"_NSEventThread","symbolLocation":144,"imageIndex":159},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":154},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":154}]},{"id":38511548,"name":"MemoryInfra","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":423324861595648},{"value":0},{"value":423324861595648},{"value":32},{"value":0},{"value":18446744073709550527},{"value":98563},{"value":0},{"value":1},{"value":98563},{"value":119043},{"value":1},{"value":1},{"value":18446744073709551569},{"value":13247557632},{"value":0},{"value":0},{"value":32},{"value":423324861595648},{"value":0},{"value":423324861595648},{"value":13247556688},{"value":0},{"value":17179869186},{"value":17179869186},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6810995492},"cpsr":{"value":4096},"fp":{"value":13247556032},"sp":{"value":13247555952},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6810919412},"far":{"value":0}},"frames":[{"imageOffset":4596,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":153},{"imageOffset":80676,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":153},{"imageOffset":40500,"symbol":"mach_msg_overwrite","symbolLocation":476,"imageIndex":153},{"imageOffset":5496,"symbol":"mach_msg","symbolLocation":24,"imageIndex":153},{"imageOffset":66741424,"imageIndex":91},{"imageOffset":66197236,"imageIndex":91},{"imageOffset":66197084,"imageIndex":91},{"imageOffset":65870644,"imageIndex":91},{"imageOffset":66336288,"imageIndex":91},{"imageOffset":66064512,"imageIndex":91},{"imageOffset":66483648,"imageIndex":91},{"imageOffset":66484032,"imageIndex":91},{"imageOffset":66589352,"imageIndex":91},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":154},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":154}]},{"id":38511549,"name":"ThreadPoolSingleThreadSharedBackgroundBlocking2","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":510186280189952},{"value":0},{"value":510186280189952},{"value":32},{"value":0},{"value":18446744073709550527},{"value":118787},{"value":0},{"value":1},{"value":118787},{"value":2045},{"value":2198368498},{"value":242},{"value":18446744073709551569},{"value":552960},{"value":0},{"value":0},{"value":32},{"value":510186280189952},{"value":0},{"value":510186280189952},{"value":13544516880},{"value":0},{"value":17179869186},{"value":17179869186},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6810995492},"cpsr":{"value":4096},"fp":{"value":13544516224},"sp":{"value":13544516144},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6810919412},"far":{"value":0}},"frames":[{"imageOffset":4596,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":153},{"imageOffset":80676,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":153},{"imageOffset":40500,"symbol":"mach_msg_overwrite","symbolLocation":476,"imageIndex":153},{"imageOffset":5496,"symbol":"mach_msg","symbolLocation":24,"imageIndex":153},{"imageOffset":66741424,"imageIndex":91},{"imageOffset":66197236,"imageIndex":91},{"imageOffset":66429892,"imageIndex":91},{"imageOffset":66432404,"imageIndex":91},{"imageOffset":66431928,"imageIndex":91},{"imageOffset":66431840,"imageIndex":91},{"imageOffset":66589352,"imageIndex":91},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":154},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":154}]},{"id":38511572,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":153},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":154},{"imageOffset":68372,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":28,"imageIndex":164},{"imageOffset":95156600,"imageIndex":91},{"imageOffset":95160968,"imageIndex":91},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":154},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":154}],"threadState":{"x":[{"value":4},{"value":0},{"value":2816},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":13052178088},{"value":0},{"value":105553142851944},{"value":9895604652290},{"value":2304},{"value":0},{"value":2304},{"value":9895604652288},{"value":305},{"value":8725813472},{"value":0},{"value":105553142851920},{"value":105553142851984},{"value":13052178656},{"value":0},{"value":0},{"value":2816},{"value":2816},{"value":5376},{"value":18446744073709551615},{"value":105553133506968}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6811186524},"cpsr":{"value":1610616832},"fp":{"value":13052178208},"sp":{"value":13052178064},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6810933740},"far":{"value":0}}},{"id":38511573,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":153},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":154},{"imageOffset":68372,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":28,"imageIndex":164},{"imageOffset":95156600,"imageIndex":91},{"imageOffset":95160968,"imageIndex":91},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":154},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":154}],"threadState":{"x":[{"value":4},{"value":0},{"value":3072},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":13052751528},{"value":0},{"value":105553142851944},{"value":9895604652290},{"value":2304},{"value":0},{"value":2304},{"value":9895604652288},{"value":305},{"value":8725813472},{"value":0},{"value":105553142851920},{"value":105553142851984},{"value":13052752096},{"value":0},{"value":0},{"value":3072},{"value":3072},{"value":5632},{"value":18446744073709551615},{"value":105553133512408}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6811186524},"cpsr":{"value":1610616832},"fp":{"value":13052751648},"sp":{"value":13052751504},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6810933740},"far":{"value":0}}},{"id":38511574,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":153},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":154},{"imageOffset":68372,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":28,"imageIndex":164},{"imageOffset":95156600,"imageIndex":91},{"imageOffset":95160968,"imageIndex":91},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":154},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":154}],"threadState":{"x":[{"value":4},{"value":0},{"value":3328},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":13530197672},{"value":0},{"value":105553142851944},{"value":9895604652290},{"value":2304},{"value":0},{"value":2304},{"value":9895604652288},{"value":305},{"value":8725813472},{"value":0},{"value":105553142851920},{"value":105553142851984},{"value":13530198240},{"value":0},{"value":0},{"value":3328},{"value":3328},{"value":5888},{"value":18446744073709551615},{"value":105553133511768}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6811186524},"cpsr":{"value":1610616832},"fp":{"value":13530197792},"sp":{"value":13530197648},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6810933740},"far":{"value":0}}},{"id":38511575,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":153},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":154},{"imageOffset":68372,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":28,"imageIndex":164},{"imageOffset":95156600,"imageIndex":91},{"imageOffset":95160968,"imageIndex":91},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":154},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":154}],"threadState":{"x":[{"value":4},{"value":0},{"value":3584},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":13530771112},{"value":0},{"value":105553142851944},{"value":9895604652290},{"value":2304},{"value":0},{"value":2304},{"value":9895604652288},{"value":305},{"value":8725813472},{"value":0},{"value":105553142851920},{"value":105553142851984},{"value":13530771680},{"value":0},{"value":0},{"value":3584},{"value":3584},{"value":6144},{"value":18446744073709551615},{"value":105553133512408}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6811186524},"cpsr":{"value":1610616832},"fp":{"value":13530771232},"sp":{"value":13530771088},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6810933740},"far":{"value":0}}},{"id":38511576,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":153},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":154},{"imageOffset":68372,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":28,"imageIndex":164},{"imageOffset":95156600,"imageIndex":91},{"imageOffset":95160968,"imageIndex":91},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":154},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":154}],"threadState":{"x":[{"value":4},{"value":0},{"value":3840},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":13531344552},{"value":0},{"value":105553142851944},{"value":9895604652290},{"value":2304},{"value":0},{"value":2304},{"value":9895604652288},{"value":305},{"value":8725813472},{"value":0},{"value":105553142851920},{"value":105553142851984},{"value":13531345120},{"value":0},{"value":0},{"value":3840},{"value":3840},{"value":6400},{"value":18446744073709551615},{"value":105553133095448}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6811186524},"cpsr":{"value":1610616832},"fp":{"value":13531344672},"sp":{"value":13531344528},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6810933740},"far":{"value":0}}},{"id":38511577,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":153},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":154},{"imageOffset":68372,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":28,"imageIndex":164},{"imageOffset":95156600,"imageIndex":91},{"imageOffset":95160968,"imageIndex":91},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":154},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":154}],"threadState":{"x":[{"value":4},{"value":0},{"value":4096},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":13531917992},{"value":0},{"value":105553142851944},{"value":9895604652290},{"value":2304},{"value":0},{"value":2304},{"value":9895604652288},{"value":305},{"value":8725813472},{"value":0},{"value":105553142851920},{"value":105553142851984},{"value":13531918560},{"value":0},{"value":0},{"value":4096},{"value":4096},{"value":6656},{"value":18446744073709551615},{"value":105553133841848}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6811186524},"cpsr":{"value":1610616832},"fp":{"value":13531918112},"sp":{"value":13531917968},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6810933740},"far":{"value":0}}},{"id":38511578,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":153},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":154},{"imageOffset":68372,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":28,"imageIndex":164},{"imageOffset":95156600,"imageIndex":91},{"imageOffset":95160968,"imageIndex":91},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":154},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":154}],"threadState":{"x":[{"value":4},{"value":0},{"value":4352},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":13532491432},{"value":0},{"value":105553142851944},{"value":9895604652290},{"value":2304},{"value":0},{"value":2304},{"value":9895604652288},{"value":305},{"value":8725813472},{"value":0},{"value":105553142851920},{"value":105553142851984},{"value":13532492000},{"value":0},{"value":0},{"value":4352},{"value":4352},{"value":6912},{"value":18446744073709551615},{"value":105553141093560}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6811186524},"cpsr":{"value":1610616832},"fp":{"value":13532491552},"sp":{"value":13532491408},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6810933740},"far":{"value":0}}},{"id":38511579,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":153},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":154},{"imageOffset":68372,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":28,"imageIndex":164},{"imageOffset":95156600,"imageIndex":91},{"imageOffset":95160968,"imageIndex":91},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":154},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":154}],"threadState":{"x":[{"value":4},{"value":0},{"value":4608},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":13533064872},{"value":0},{"value":105553142851944},{"value":9895604652290},{"value":2304},{"value":0},{"value":2304},{"value":9895604652288},{"value":305},{"value":8725813472},{"value":0},{"value":105553142851920},{"value":105553142851984},{"value":13533065440},{"value":0},{"value":0},{"value":4608},{"value":4608},{"value":7168},{"value":18446744073709551615},{"value":105553201173208}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6811186524},"cpsr":{"value":1610616832},"fp":{"value":13533064992},"sp":{"value":13533064848},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6810933740},"far":{"value":0}}},{"id":38511580,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":153},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":154},{"imageOffset":68372,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":28,"imageIndex":164},{"imageOffset":95156600,"imageIndex":91},{"imageOffset":95160968,"imageIndex":91},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":154},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":154}],"threadState":{"x":[{"value":4},{"value":0},{"value":4864},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":13533638312},{"value":0},{"value":105553142851944},{"value":9895604652290},{"value":2304},{"value":0},{"value":2304},{"value":9895604652288},{"value":305},{"value":8725813472},{"value":0},{"value":105553142851920},{"value":105553142851984},{"value":13533638880},{"value":0},{"value":0},{"value":4864},{"value":4864},{"value":7424},{"value":18446744073709551615},{"value":105553200973240}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6811186524},"cpsr":{"value":1610616832},"fp":{"value":13533638432},"sp":{"value":13533638288},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6810933740},"far":{"value":0}}},{"id":38511581,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":153},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":154},{"imageOffset":68372,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":28,"imageIndex":164},{"imageOffset":95156600,"imageIndex":91},{"imageOffset":95160968,"imageIndex":91},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":154},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":154}],"threadState":{"x":[{"value":260},{"value":0},{"value":5120},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":13534211752},{"value":0},{"value":105553142851944},{"value":9895604652290},{"value":2304},{"value":0},{"value":2304},{"value":9895604652288},{"value":305},{"value":8725813472},{"value":0},{"value":105553142851920},{"value":105553142851984},{"value":13534212320},{"value":0},{"value":0},{"value":5120},{"value":5120},{"value":7680},{"value":18446744073709551615},{"value":105553201173208}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6811186524},"cpsr":{"value":1610616832},"fp":{"value":13534211872},"sp":{"value":13534211728},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6810933740},"far":{"value":0}}},{"id":38541289,"frames":[{"imageOffset":7456,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":154}],"threadState":{"x":[{"value":6107082752},{"value":124955},{"value":6106546176},{"value":0},{"value":409604},{"value":18446744073709551615},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":0},"cpsr":{"value":4096},"fp":{"value":0},"sp":{"value":6107082752},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6811163936},"far":{"value":0}}},{"id":38542343,"frames":[{"imageOffset":7456,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":154}],"threadState":{"x":[{"value":6157791232},{"value":165387},{"value":6157254656},{"value":0},{"value":409604},{"value":18446744073709551615},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":0},"cpsr":{"value":4096},"fp":{"value":0},"sp":{"value":6157791232},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6811163936},"far":{"value":0}}},{"id":38542345,"frames":[{"imageOffset":7456,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":154}],"threadState":{"x":[{"value":6169931776},{"value":172631},{"value":6169395200},{"value":0},{"value":409604},{"value":18446744073709551615},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":0},"cpsr":{"value":4096},"fp":{"value":0},"sp":{"value":6169931776},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6811163936},"far":{"value":0}}},{"id":38549998,"name":"Thread (pooled)","threadState":{"x":[{"value":260},{"value":0},{"value":23552},{"value":0},{"value":0},{"value":160},{"value":29},{"value":999999000},{"value":6173552008},{"value":0},{"value":105553124715160},{"value":2},{"value":0},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8725813472},{"value":0},{"value":105553124715136},{"value":105553124715200},{"value":6173552864},{"value":999999000},{"value":29},{"value":23552},{"value":23553},{"value":23808},{"value":18446744072709551616},{"value":5302980832}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6811186524},"cpsr":{"value":1610616832},"fp":{"value":6173552128},"sp":{"value":6173551984},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6810933740},"far":{"value":0}},"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":153},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":154},{"imageOffset":2091160,"imageIndex":108},{"imageOffset":2090828,"symbol":"QWaitCondition::wait(QMutex*, QDeadlineTimer)","symbolLocation":108,"imageIndex":108},{"imageOffset":2068292,"imageIndex":108},{"imageOffset":2051468,"imageIndex":108},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":154},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":154}]},{"id":38549999,"name":"Thread (pooled)","threadState":{"x":[{"value":260},{"value":0},{"value":21248},{"value":0},{"value":0},{"value":160},{"value":29},{"value":999998000},{"value":13115092360},{"value":0},{"value":105553124715928},{"value":2},{"value":0},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8725813472},{"value":0},{"value":105553124715904},{"value":105553124715968},{"value":13115093216},{"value":999998000},{"value":29},{"value":21248},{"value":21249},{"value":21504},{"value":18446744072709551616},{"value":105553124679544}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6811186524},"cpsr":{"value":1610616832},"fp":{"value":13115092480},"sp":{"value":13115092336},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6810933740},"far":{"value":0}},"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":153},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":154},{"imageOffset":2091160,"imageIndex":108},{"imageOffset":2090828,"symbol":"QWaitCondition::wait(QMutex*, QDeadlineTimer)","symbolLocation":108,"imageIndex":108},{"imageOffset":2068292,"imageIndex":108},{"imageOffset":2051468,"imageIndex":108},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":154},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":154}]},{"id":38550000,"name":"Thread (pooled)","threadState":{"x":[{"value":260},{"value":0},{"value":18176},{"value":0},{"value":0},{"value":160},{"value":29},{"value":999999000},{"value":13115665800},{"value":0},{"value":105553125456920},{"value":2},{"value":0},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8725813472},{"value":0},{"value":105553125456896},{"value":105553125456960},{"value":13115666656},{"value":999999000},{"value":29},{"value":18176},{"value":18177},{"value":18432},{"value":18446744072709551616},{"value":105553124679544}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6811186524},"cpsr":{"value":1610616832},"fp":{"value":13115665920},"sp":{"value":13115665776},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6810933740},"far":{"value":0}},"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":153},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":154},{"imageOffset":2091160,"imageIndex":108},{"imageOffset":2090828,"symbol":"QWaitCondition::wait(QMutex*, QDeadlineTimer)","symbolLocation":108,"imageIndex":108},{"imageOffset":2068292,"imageIndex":108},{"imageOffset":2051468,"imageIndex":108},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":154},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":154}]},{"id":38550002,"name":"Thread (pooled)","threadState":{"x":[{"value":260},{"value":0},{"value":17408},{"value":0},{"value":0},{"value":160},{"value":29},{"value":999999000},{"value":13116239240},{"value":0},{"value":105553124714776},{"value":2},{"value":0},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8725813472},{"value":0},{"value":105553124714752},{"value":105553124714816},{"value":13116240096},{"value":999999000},{"value":29},{"value":17408},{"value":17665},{"value":17920},{"value":18446744072709551616},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6811186524},"cpsr":{"value":1610616832},"fp":{"value":13116239360},"sp":{"value":13116239216},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6810933740},"far":{"value":0}},"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":153},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":154},{"imageOffset":2091160,"imageIndex":108},{"imageOffset":2090828,"symbol":"QWaitCondition::wait(QMutex*, QDeadlineTimer)","symbolLocation":108,"imageIndex":108},{"imageOffset":2068292,"imageIndex":108},{"imageOffset":2051468,"imageIndex":108},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":154},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":154}]},{"id":38550372,"frames":[{"imageOffset":7456,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":154}],"threadState":{"x":[{"value":13524529152},{"value":0},{"value":13523992576},{"value":0},{"value":278532},{"value":18446744073709551615},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":0},"cpsr":{"value":4096},"fp":{"value":0},"sp":{"value":13524529152},"esr":{"value":0,"description":" Address size fault"},"pc":{"value":6811163936},"far":{"value":0}}},{"id":38550373,"frames":[{"imageOffset":7456,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":154}],"threadState":{"x":[{"value":13525102592},{"value":0},{"value":13524566016},{"value":0},{"value":278532},{"value":18446744073709551615},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":0},"cpsr":{"value":4096},"fp":{"value":0},"sp":{"value":13525102592},"esr":{"value":0,"description":" Address size fault"},"pc":{"value":6811163936},"far":{"value":0}}},{"id":38550374,"frames":[{"imageOffset":7456,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":154}],"threadState":{"x":[{"value":13535834112},{"value":168303},{"value":13535297536},{"value":0},{"value":409604},{"value":18446744073709551615},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":0},"cpsr":{"value":4096},"fp":{"value":0},"sp":{"value":13535834112},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6811163936},"far":{"value":0}}},{"id":38550628,"name":"ThreadPoolForegroundWorker","threadState":{"x":[{"value":268451845},{"value":17179869442},{"value":0},{"value":600638291443712},{"value":0},{"value":600638291443712},{"value":32},{"value":33000},{"value":18446744073709550527},{"value":139847},{"value":0},{"value":1},{"value":139847},{"value":0},{"value":2043},{"value":3089780731},{"value":18446744073709551569},{"value":8725816136},{"value":0},{"value":33000},{"value":32},{"value":600638291443712},{"value":0},{"value":600638291443712},{"value":13872147728},{"value":0},{"value":17179870466},{"value":17179869442},{"value":1282}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6810995492},"cpsr":{"value":4096},"fp":{"value":13872147072},"sp":{"value":13872146992},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6810919412},"far":{"value":0}},"frames":[{"imageOffset":4596,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":153},{"imageOffset":80676,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":153},{"imageOffset":40500,"symbol":"mach_msg_overwrite","symbolLocation":476,"imageIndex":153},{"imageOffset":5496,"symbol":"mach_msg","symbolLocation":24,"imageIndex":153},{"imageOffset":66741424,"imageIndex":91},{"imageOffset":66197236,"imageIndex":91},{"imageOffset":66429892,"imageIndex":91},{"imageOffset":66433464,"imageIndex":91},{"imageOffset":66432016,"imageIndex":91},{"imageOffset":66431744,"imageIndex":91},{"imageOffset":66589352,"imageIndex":91},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":154},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":154}]},{"id":38550629,"name":"ThreadPoolForegroundWorker","threadState":{"x":[{"value":268451845},{"value":17179869442},{"value":0},{"value":708562229657600},{"value":0},{"value":708562229657600},{"value":32},{"value":33000},{"value":18446744073709550527},{"value":164975},{"value":0},{"value":1},{"value":164975},{"value":2045},{"value":2722513099},{"value":203},{"value":18446744073709551569},{"value":409600},{"value":0},{"value":33000},{"value":32},{"value":708562229657600},{"value":0},{"value":708562229657600},{"value":13917859088},{"value":0},{"value":17179870466},{"value":17179869442},{"value":1282}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6810995492},"cpsr":{"value":4096},"fp":{"value":13917858432},"sp":{"value":13917858352},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6810919412},"far":{"value":0}},"frames":[{"imageOffset":4596,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":153},{"imageOffset":80676,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":153},{"imageOffset":40500,"symbol":"mach_msg_overwrite","symbolLocation":476,"imageIndex":153},{"imageOffset":5496,"symbol":"mach_msg","symbolLocation":24,"imageIndex":153},{"imageOffset":66741424,"imageIndex":91},{"imageOffset":66197236,"imageIndex":91},{"imageOffset":66429892,"imageIndex":91},{"imageOffset":66432404,"imageIndex":91},{"imageOffset":66432016,"imageIndex":91},{"imageOffset":66431744,"imageIndex":91},{"imageOffset":66589352,"imageIndex":91},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":154},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":154}]},{"id":38550630,"name":"ThreadPoolBackgroundWorker","threadState":{"x":[{"value":268451845},{"value":17179869442},{"value":0},{"value":461756228960256},{"value":0},{"value":461756228960256},{"value":32},{"value":33000},{"value":18446744073709550527},{"value":107511},{"value":0},{"value":1},{"value":107511},{"value":2045},{"value":2410301571},{"value":131},{"value":18446744073709551569},{"value":673792},{"value":0},{"value":33000},{"value":32},{"value":461756228960256},{"value":0},{"value":461756228960256},{"value":13442968848},{"value":0},{"value":17179870466},{"value":17179869442},{"value":1282}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6810995492},"cpsr":{"value":4096},"fp":{"value":13442968192},"sp":{"value":13442968112},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6810919412},"far":{"value":0}},"frames":[{"imageOffset":4596,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":153},{"imageOffset":80676,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":153},{"imageOffset":40500,"symbol":"mach_msg_overwrite","symbolLocation":476,"imageIndex":153},{"imageOffset":5496,"symbol":"mach_msg","symbolLocation":24,"imageIndex":153},{"imageOffset":66741424,"imageIndex":91},{"imageOffset":66197236,"imageIndex":91},{"imageOffset":66429892,"imageIndex":91},{"imageOffset":66432404,"imageIndex":91},{"imageOffset":66431884,"imageIndex":91},{"imageOffset":66431792,"imageIndex":91},{"imageOffset":66589352,"imageIndex":91},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":154},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":154}]}],
"usedImages" : [
{
"source" : "P",
"arch" : "arm64",
"base" : 6107594752,
"size" : 32768,
"uuid" : "f6112c45-e8b3-3787-a9ab-c7209e77530f",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/_imagingmath.cpython-311-darwin.so",
"name" : "_imagingmath.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13119160320,
"size" : 147456,
"uuid" : "96691a20-aa26-3905-98c4-0939edf5bdd4",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/pdb\/_pdbio.cpython-311-darwin.so",
"name" : "_pdbio.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13116473344,
"size" : 409600,
"uuid" : "f03f0cb6-82d1-33ee-a10b-cc8d92c14417",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/mmcif\/_mmcif.cpython-311-darwin.so",
"name" : "_mmcif.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13117865984,
"size" : 458752,
"uuid" : "6b6db01c-1280-3773-b08f-d693798baba7",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/mmcif\/mmcif.cpython-311-darwin.so",
"name" : "mmcif.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5592875008,
"size" : 49152,
"uuid" : "12c53516-421d-3f7a-a81e-95bcfdb8a3ff",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/nones_formathandler.cpython-311-darwin.so",
"name" : "nones_formathandler.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5508448256,
"size" : 81920,
"uuid" : "703104dc-b212-3b8d-9c78-4f57b3c9cb18",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/numpy_formathandler.cpython-311-darwin.so",
"name" : "numpy_formathandler.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5519736832,
"size" : 147456,
"uuid" : "0ee9ca02-13c3-3c35-99ec-fdcf207a8b79",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/lxml\/_elementpath.cpython-311-darwin.so",
"name" : "_elementpath.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5587861504,
"size" : 4096000,
"uuid" : "3c92d9be-9b63-3d45-838a-e4fd342ddf46",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/lxml\/etree.cpython-311-darwin.so",
"name" : "etree.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5343444992,
"size" : 16384,
"uuid" : "c802abe8-4352-3827-8717-7d4c0f0892ff",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/graphics\/_graphics.cpython-311-darwin.so",
"name" : "_graphics.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5511315456,
"size" : 81920,
"uuid" : "2f167b0b-b0ab-3b3f-a99e-27fc153b427d",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/_ribbons.cpython-311-darwin.so",
"name" : "_ribbons.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5511626752,
"size" : 49152,
"uuid" : "cf3da9e7-3f71-33cf-8133-69a177c7de19",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtOpenGLWidgets.abi3.so",
"name" : "QtOpenGLWidgets.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5514461184,
"size" : 49152,
"uuid" : "bca2dfd9-9c81-3013-a4e9-0505eec8b180",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtOpenGLWidgets.framework\/Versions\/A\/QtOpenGLWidgets",
"name" : "QtOpenGLWidgets"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5517279232,
"size" : 753664,
"uuid" : "b6b681ee-3078-3901-a867-0f46c38489a1",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtOpenGL.abi3.so",
"name" : "QtOpenGL.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5512052736,
"size" : 131072,
"uuid" : "650aead6-ce16-39bb-9ba1-4bf9986b96d6",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/msgpack\/_cmsgpack.cpython-311-darwin.so",
"name" : "_cmsgpack.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5511823360,
"size" : 131072,
"uuid" : "f5aa887d-ba83-3ffc-a567-69cef02c403b",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/core\/_serialize.cpython-311-darwin.so",
"name" : "_serialize.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5509693440,
"size" : 180224,
"uuid" : "87eed069-25fc-30f6-aa30-1e54859d92e2",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/lz4\/frame\/_frame.cpython-311-darwin.so",
"name" : "_frame.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5510004736,
"size" : 81920,
"uuid" : "d7bd530c-3353-37a6-b81f-ee3179d65811",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/lz4\/_version.cpython-311-darwin.so",
"name" : "_version.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5318574080,
"size" : 16384,
"uuid" : "117d4c42-f31b-3051-a57f-edb1c3f20c84",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/core\/_mac_util.cpython-311-darwin.so",
"name" : "_mac_util.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 5254332416,
"size" : 49152,
"uuid" : "9381bd6d-84a5-3c72-b3b8-88428afa4782",
"path" : "\/usr\/lib\/libobjc-trampolines.dylib",
"name" : "libobjc-trampolines.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5318475776,
"size" : 32768,
"uuid" : "73065b31-2315-3d94-8ece-5a8b66a743b4",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqmacjp2.dylib",
"name" : "libqmacjp2.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5318377472,
"size" : 32768,
"uuid" : "97f0c601-577c-3e3d-9728-1b67a04a846f",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqtga.dylib",
"name" : "libqtga.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5309857792,
"size" : 32768,
"uuid" : "aaf72e4f-a4b5-3143-abe4-cd0b9c88e736",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqicns.dylib",
"name" : "libqicns.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5309759488,
"size" : 32768,
"uuid" : "2170e2a2-3e24-3e7d-889f-70bfe1445514",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqpdf.dylib",
"name" : "libqpdf.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5520654336,
"size" : 8011776,
"uuid" : "2297c440-bc47-3988-b508-c4f43a12de4c",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtPdf.framework\/Versions\/A\/QtPdf",
"name" : "QtPdf"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5309661184,
"size" : 32768,
"uuid" : "77608453-0c22-327c-909a-3e61997f035f",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqsvg.dylib",
"name" : "libqsvg.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5319163904,
"size" : 229376,
"uuid" : "6ae5d9b1-7feb-31a5-b3c1-09bfbb908790",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtSvg.framework\/Versions\/A\/QtSvg",
"name" : "QtSvg"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5320114176,
"size" : 393216,
"uuid" : "d172365c-3e61-356e-841b-8eebabcb45da",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqtiff.dylib",
"name" : "libqtiff.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5319606272,
"size" : 425984,
"uuid" : "faac1c6c-772a-36fc-99b1-1796fe013571",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqjpeg.dylib",
"name" : "libqjpeg.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5309562880,
"size" : 32768,
"uuid" : "df91425d-7fd1-3fc7-90c3-147cb82c19db",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqmacheif.dylib",
"name" : "libqmacheif.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5302501376,
"size" : 32768,
"uuid" : "0552b37d-fa94-3519-9b5c-94cb314a2cd1",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqico.dylib",
"name" : "libqico.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5308825600,
"size" : 442368,
"uuid" : "d64ad34b-954b-3e65-b4b7-cb030bea2c1e",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqwebp.dylib",
"name" : "libqwebp.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5277384704,
"size" : 32768,
"uuid" : "dbf1d60b-d923-3193-a32e-96d3a81b9556",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqwbmp.dylib",
"name" : "libqwbmp.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5277286400,
"size" : 32768,
"uuid" : "e00ce596-2864-3abf-bdff-8a38c7f22299",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqgif.dylib",
"name" : "libqgif.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5273763840,
"size" : 131072,
"uuid" : "3ef700f1-b0ef-333f-8291-6877887bedaa",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/vbo.cpython-311-darwin.so",
"name" : "vbo.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5254201344,
"size" : 49152,
"uuid" : "38eab131-624a-32cf-8d4e-374bca53e017",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/latebind.cpython-311-darwin.so",
"name" : "latebind.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5246910464,
"size" : 65536,
"uuid" : "d9a192eb-4bf9-362f-99d4-f6bc1e368b01",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/formathandler.cpython-311-darwin.so",
"name" : "formathandler.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5253808128,
"size" : 229376,
"uuid" : "33919aef-b02e-386a-8f81-a661fe002ddc",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/wrapper.cpython-311-darwin.so",
"name" : "wrapper.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5251268608,
"size" : 196608,
"uuid" : "c4b0c9bc-a01b-3cf7-b16b-77f9b13b6cd9",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/arraydatatype.cpython-311-darwin.so",
"name" : "arraydatatype.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5097144320,
"size" : 49152,
"uuid" : "4c5d42bf-4e9d-3c59-bf2e-303deda3aeb2",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/errorchecker.cpython-311-darwin.so",
"name" : "errorchecker.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5251710976,
"size" : 114688,
"uuid" : "5d45ac62-e87c-31ae-9f9a-8bdc101f61d2",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/matplotlib\/_image.cpython-311-darwin.so",
"name" : "_image.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5246631936,
"size" : 114688,
"uuid" : "7d718d62-a2e1-318a-8f9d-9b2ac2293986",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/kiwisolver\/_cext.cpython-311-darwin.so",
"name" : "_cext.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5251940352,
"size" : 589824,
"uuid" : "d33db4fb-c546-3a3f-af92-06b3acf9a005",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/matplotlib\/ft2font.cpython-311-darwin.so",
"name" : "ft2font.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5239848960,
"size" : 114688,
"uuid" : "f78c05df-89c8-38d5-90fa-ae102328b198",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/matplotlib\/_path.cpython-311-darwin.so",
"name" : "_path.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5239767040,
"size" : 16384,
"uuid" : "fdd4ed4b-946d-3635-b962-de82abc3462a",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/matplotlib\/_c_internal_utils.cpython-311-darwin.so",
"name" : "_c_internal_utils.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5239685120,
"size" : 16384,
"uuid" : "10cb0192-6e54-3232-ba83-11bac176e9df",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/termios.cpython-311-darwin.so",
"name" : "termios.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5238079488,
"size" : 376832,
"uuid" : "be0ff669-9570-3fbc-b643-583c25c53bcc",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/_imaging.cpython-311-darwin.so",
"name" : "_imaging.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5235539968,
"size" : 688128,
"uuid" : "15feb07e-8bff-3562-a02a-8cf33732e6df",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libtiff.6.dylib",
"name" : "libtiff.6.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5240045568,
"size" : 524288,
"uuid" : "f077add4-3b80-3e03-9f5d-d46370a8594f",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libjpeg.62.4.0.dylib",
"name" : "libjpeg.62.4.0.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5240684544,
"size" : 606208,
"uuid" : "78bac0b1-a0df-3e6e-b906-cbc961cdb354",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libopenjp2.2.5.2.dylib",
"name" : "libopenjp2.2.5.2.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5236359168,
"size" : 114688,
"uuid" : "aa2246c4-3418-31d6-b63c-b12523be454f",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libz.1.3.1.dylib",
"name" : "libz.1.3.1.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5097783296,
"size" : 163840,
"uuid" : "72b5dc2b-0af5-32a5-8a55-1a0cc0dd14e0",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libxcb.1.dylib",
"name" : "libxcb.1.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5236539392,
"size" : 262144,
"uuid" : "8a87fb4d-f743-3c9e-bee7-721b8d2f34ac",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/liblzma.5.dylib",
"name" : "liblzma.5.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5098078208,
"size" : 16384,
"uuid" : "55c39336-6291-32f1-a957-7d880570affd",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libXau.6.0.0.dylib",
"name" : "libXau.6.0.0.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5097390080,
"size" : 262144,
"uuid" : "f2c706bd-a2c4-39ce-b4c0-048c01ea0eca",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_decimal.cpython-311-darwin.so",
"name" : "_decimal.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5097308160,
"size" : 16384,
"uuid" : "8eb0c267-c007-3e24-9604-1f0a78868795",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_uuid.cpython-311-darwin.so",
"name" : "_uuid.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5095260160,
"size" : 32768,
"uuid" : "7503f11a-978c-3a80-b5da-ab207a441c5e",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_multibytecodec.cpython-311-darwin.so",
"name" : "_multibytecodec.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5236883456,
"size" : 1114112,
"uuid" : "5200c6a0-ccdb-3607-9947-1defdd6fb647",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/unicodedata.cpython-311-darwin.so",
"name" : "unicodedata.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5095505920,
"size" : 147456,
"uuid" : "3a5bf6ce-7cc0-327a-8ff1-52f7adac24a4",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/charset_normalizer\/md__mypyc.cpython-311-darwin.so",
"name" : "md__mypyc.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5095424000,
"size" : 16384,
"uuid" : "89141903-d9ce-369c-b76f-2f794585b0e3",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/charset_normalizer\/md.cpython-311-darwin.so",
"name" : "md.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5095833600,
"size" : 147456,
"uuid" : "93458d84-c67a-3585-8201-ff7b58cc50a6",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/surface\/_surface.cpython-311-darwin.so",
"name" : "_surface.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5092327424,
"size" : 16384,
"uuid" : "6ea2ba5a-5354-35d2-a092-0249bbb6d929",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/pdb_lib\/_load_libs.cpython-311-darwin.so",
"name" : "_load_libs.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5092163584,
"size" : 32768,
"uuid" : "b0eab6c4-6692-3eac-bea4-60c69e87993c",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/pdb_lib\/lib\/libpdbconnect.dylib",
"name" : "libpdbconnect.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5091557376,
"size" : 409600,
"uuid" : "358a0dd4-0955-30b7-a45c-561026d32a66",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/map\/_map.cpython-311-darwin.so",
"name" : "_map.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5088739328,
"size" : 49152,
"uuid" : "fe5b0329-3d3a-3bfa-a7e9-e6c0e583311e",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/cytmpl.cpython-311-darwin.so",
"name" : "cytmpl.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5089804288,
"size" : 98304,
"uuid" : "12f930bf-d331-3ae7-88cb-fbf14c2f66f7",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/tinyarray.cpython-311-darwin.so",
"name" : "tinyarray.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5089132544,
"size" : 425984,
"uuid" : "de33f8cb-88d5-3371-851a-e5de0f9689c2",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/cymol.cpython-311-darwin.so",
"name" : "cymol.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5090066432,
"size" : 180224,
"uuid" : "106fe191-9c12-3ced-bb2f-fa38a412daf1",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/libmolc.dylib",
"name" : "libmolc.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5087592448,
"size" : 16384,
"uuid" : "0d834156-6229-3383-833b-5e4dbda14b77",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/_load_libs.cpython-311-darwin.so",
"name" : "_load_libs.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5092442112,
"size" : 1114112,
"uuid" : "fd7b00a2-d609-31e8-8ce3-7c101acdcbbe",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/lib\/libatomstruct.dylib",
"name" : "libatomstruct.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5089001472,
"size" : 32768,
"uuid" : "3db66b4e-c7b2-34b6-ae7b-bb92d644ccb7",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/lib\/libelement.dylib",
"name" : "libelement.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5088903168,
"size" : 16384,
"uuid" : "5f3c3a7c-ae17-3758-b5c7-5e9a0d0a4a39",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/lib\/libpyinstance.dylib",
"name" : "libpyinstance.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5021630464,
"size" : 32768,
"uuid" : "d197680c-26b9-3292-85bc-f61af0ff34bb",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_csv.cpython-311-darwin.so",
"name" : "_csv.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5081661440,
"size" : 16384,
"uuid" : "ecf905dd-b03f-3e39-a475-0f3103f3e6d3",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/grp.cpython-311-darwin.so",
"name" : "grp.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5022105600,
"size" : 16384,
"uuid" : "cd5f3f7c-54a3-322d-a180-6c7b94deed82",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_scproxy.cpython-311-darwin.so",
"name" : "_scproxy.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5055971328,
"size" : 98304,
"uuid" : "5c15959b-b36d-32f8-80b0-b0558dbb9fcc",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_ssl.cpython-311-darwin.so",
"name" : "_ssl.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5082841088,
"size" : 344064,
"uuid" : "edcc52bf-058b-3550-8a40-7e432a5ee6bb",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/libssl.1.1.dylib",
"name" : "libssl.1.1.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5022023680,
"size" : 16384,
"uuid" : "b3287e1f-ce2c-3c6f-bc12-deb15c14593c",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_queue.cpython-311-darwin.so",
"name" : "_queue.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5021794304,
"size" : 16384,
"uuid" : "157e3710-caca-35b5-9fda-d1c4efc75429",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_heapq.cpython-311-darwin.so",
"name" : "_heapq.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5021892608,
"size" : 49152,
"uuid" : "0895ead1-fff8-3401-9c5c-5c4254ce969b",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/array.cpython-311-darwin.so",
"name" : "array.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5020385280,
"size" : 65536,
"uuid" : "ff7c6b72-2303-3d40-a4fa-f3d840425be2",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_socket.cpython-311-darwin.so",
"name" : "_socket.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5055692800,
"size" : 163840,
"uuid" : "78ab6dee-103a-31de-bb4e-ea5e9b694cb0",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/pyexpat.cpython-311-darwin.so",
"name" : "pyexpat.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5052760064,
"size" : 147456,
"uuid" : "240cb694-5652-380e-a13f-72e024b43ffc",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/styles\/libqmacstyle.dylib",
"name" : "libqmacstyle.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 5014175744,
"CFBundleShortVersionString" : "1.0",
"CFBundleIdentifier" : "com.apple.AppleMetalOpenGLRenderer",
"size" : 442368,
"uuid" : "c032830a-fbed-356d-a4a7-acd24492f336",
"path" : "\/System\/Library\/Extensions\/AppleMetalOpenGLRenderer.bundle\/Contents\/MacOS\/AppleMetalOpenGLRenderer",
"name" : "AppleMetalOpenGLRenderer",
"CFBundleVersion" : "1"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5022220288,
"size" : 638976,
"uuid" : "68fd5eb3-4cdf-3190-8b80-e5378d6b4c9d",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/platforms\/libqcocoa.dylib",
"name" : "libqcocoa.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5012570112,
"size" : 229376,
"uuid" : "5b3816f5-31a1-3950-9b9a-77d1f921188c",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWebEngineCore.abi3.so",
"name" : "QtWebEngineCore.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4818862080,
"size" : 32768,
"uuid" : "a169d745-309d-33d5-a2e6-e7c4e96708be",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWebChannel.abi3.so",
"name" : "QtWebChannel.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5013291008,
"size" : 163840,
"uuid" : "88b20f5e-7cfd-31bb-ac2c-68580822b362",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtPrintSupport.abi3.so",
"name" : "QtPrintSupport.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5010718720,
"size" : 491520,
"uuid" : "07f8ba95-385f-3636-aaf1-1cee596fe424",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtNetwork.abi3.so",
"name" : "QtNetwork.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4484759552,
"size" : 65536,
"uuid" : "e159845d-c85f-317e-a1d0-225a578b8d24",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWebEngineWidgets.abi3.so",
"name" : "QtWebEngineWidgets.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4483252224,
"size" : 98304,
"uuid" : "16db4b50-36fd-3e6b-a27f-a1c2f3f65a0e",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWebEngineWidgets.framework\/Versions\/A\/QtWebEngineWidgets",
"name" : "QtWebEngineWidgets"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4484923392,
"size" : 278528,
"uuid" : "69a381be-74c3-3943-839e-c2710e3b1221",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtPrintSupport.framework\/Versions\/A\/QtPrintSupport",
"name" : "QtPrintSupport"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13255770112,
"size" : 165756928,
"uuid" : "72eb72da-af14-3e6d-a878-889044e69fe6",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWebEngineCore.framework\/Versions\/A\/QtWebEngineCore",
"name" : "QtWebEngineCore"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5014962176,
"size" : 3899392,
"uuid" : "cd78ea4b-fdea-35f8-9425-2acf80e29b96",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQuick.framework\/Versions\/A\/QtQuick",
"name" : "QtQuick"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4998643712,
"size" : 409600,
"uuid" : "69fc8b0b-b6a0-3e08-8bac-584a6a3a93b0",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtOpenGL.framework\/Versions\/A\/QtOpenGL",
"name" : "QtOpenGL"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5005312000,
"size" : 540672,
"uuid" : "054ea112-953a-32d0-a58f-bc186ae37747",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQmlModels.framework\/Versions\/A\/QtQmlModels",
"name" : "QtQmlModels"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4747427840,
"size" : 163840,
"uuid" : "bcc67564-cc1c-3017-b5f1-0b6e1b0e993c",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWebChannel.framework\/Versions\/A\/QtWebChannel",
"name" : "QtWebChannel"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5006049280,
"size" : 3833856,
"uuid" : "432c2bd3-2e4c-3089-b092-df3547feaafd",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQml.framework\/Versions\/A\/QtQml",
"name" : "QtQml"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5003804672,
"size" : 1081344,
"uuid" : "fed592df-e45a-3887-b02f-65e20ff51c4b",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtNetwork.framework\/Versions\/A\/QtNetwork",
"name" : "QtNetwork"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5011963904,
"size" : 442368,
"uuid" : "a02974a0-e1a7-316f-8e3b-ae2e03dc4433",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtPositioning.framework\/Versions\/A\/QtPositioning",
"name" : "QtPositioning"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4483481600,
"size" : 81920,
"uuid" : "55f5d063-f2ad-361c-ad8d-afc759bfeec1",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQuickWidgets.framework\/Versions\/A\/QtQuickWidgets",
"name" : "QtQuickWidgets"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4814487552,
"size" : 1572864,
"uuid" : "c8d7e625-2a13-3c34-9dff-b6656a6f86e7",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtGui.abi3.so",
"name" : "QtGui.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4819173376,
"size" : 3112960,
"uuid" : "ee8cff87-6a5d-38d1-8403-031c9916b0fb",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWidgets.abi3.so",
"name" : "QtWidgets.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4825530368,
"size" : 4554752,
"uuid" : "3f78f0e3-d0d9-3375-a27c-2906014b5fe2",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWidgets.framework\/Versions\/A\/QtWidgets",
"name" : "QtWidgets"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4806672384,
"size" : 6537216,
"uuid" : "e1e85506-35dd-32b9-b614-7f3179359271",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtGui.framework\/Versions\/A\/QtGui",
"name" : "QtGui"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4402642944,
"size" : 507904,
"uuid" : "7a365b1d-ddab-3dec-80b0-d21186597d32",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtDBus.framework\/Versions\/A\/QtDBus",
"name" : "QtDBus"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4402446336,
"size" : 81920,
"uuid" : "b6b22843-cb0a-3d00-952e-37e8808d2ee8",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/sip.cpython-311-darwin.so",
"name" : "sip.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 4398170112,
"CFBundleShortVersionString" : "3.0",
"CFBundleIdentifier" : "com.apple.security.csparser",
"size" : 131072,
"uuid" : "5b38c00e-20a2-3dd5-b582-3d7bf058f0ba",
"path" : "\/System\/Library\/Frameworks\/Security.framework\/Versions\/A\/PlugIns\/csparser.bundle\/Contents\/MacOS\/csparser",
"name" : "csparser",
"CFBundleVersion" : "61123.121.1"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4743659520,
"size" : 1769472,
"uuid" : "80f789cb-18ee-3995-a59b-03dc33158c84",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtCore.abi3.so",
"name" : "QtCore.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4476469248,
"size" : 4849664,
"uuid" : "113c92ac-6022-34c0-8532-0a96c67af294",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtCore.framework\/Versions\/A\/QtCore",
"name" : "QtCore"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4395466752,
"size" : 32768,
"uuid" : "0722922a-a378-3dee-b11b-96d1ae381b09",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_json.cpython-311-darwin.so",
"name" : "_json.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4393861120,
"size" : 114688,
"uuid" : "229d2556-e1e0-3432-9458-1636804585a5",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/geometry\/_geometry.cpython-311-darwin.so",
"name" : "_geometry.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4377247744,
"size" : 16384,
"uuid" : "5973ec29-8c62-3285-97ee-5797aef28b1c",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_opcode.cpython-311-darwin.so",
"name" : "_opcode.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4398448640,
"size" : 737280,
"uuid" : "49451e8a-e3c8-3429-83d8-249e81e378cd",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_generator.cpython-311-darwin.so",
"name" : "_generator.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4394106880,
"size" : 49152,
"uuid" : "17a4344b-3221-36c4-9019-53cc1223e124",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_sfc64.cpython-311-darwin.so",
"name" : "_sfc64.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4395302912,
"size" : 81920,
"uuid" : "35fb9307-f991-3159-86db-21f6c67b9198",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_pcg64.cpython-311-darwin.so",
"name" : "_pcg64.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4395155456,
"size" : 65536,
"uuid" : "d3035eea-ed0e-398a-afbe-f9a8016701db",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_philox.cpython-311-darwin.so",
"name" : "_philox.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4395008000,
"size" : 65536,
"uuid" : "7dab4595-a351-3061-861b-c426baee85b3",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_mt19937.cpython-311-darwin.so",
"name" : "_mt19937.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4393467904,
"size" : 311296,
"uuid" : "0033ea49-a161-3564-b09e-6a6c3b902698",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_bounded_integers.cpython-311-darwin.so",
"name" : "_bounded_integers.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4393140224,
"size" : 32768,
"uuid" : "3206e248-2c9b-345c-98ac-8f9dfc6d639b",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_blake2.cpython-311-darwin.so",
"name" : "_blake2.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4393025536,
"size" : 32768,
"uuid" : "322b4be7-35a8-331a-a549-7a0297d9dd70",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_hashlib.cpython-311-darwin.so",
"name" : "_hashlib.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4474142720,
"size" : 1687552,
"uuid" : "59149ee6-b873-3c5d-8fed-d11966210295",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/libcrypto.1.1.dylib",
"name" : "libcrypto.1.1.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4392747008,
"size" : 196608,
"uuid" : "8590d52a-d755-3ffd-8f68-f9cb638359fc",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_common.cpython-311-darwin.so",
"name" : "_common.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4393238528,
"size" : 147456,
"uuid" : "377e255e-f9a4-3173-8265-a899000c5d0f",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/bit_generator.cpython-311-darwin.so",
"name" : "bit_generator.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4394270720,
"size" : 622592,
"uuid" : "05ddaab9-9d7f-3317-a3c4-5e9936fe3ceb",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/mtrand.cpython-311-darwin.so",
"name" : "mtrand.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4377116672,
"size" : 65536,
"uuid" : "7b5335ce-92a1-3ae2-bde0-0e5d5641b2c9",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/fft\/_pocketfft_internal.cpython-311-darwin.so",
"name" : "_pocketfft_internal.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4376936448,
"size" : 98304,
"uuid" : "09f94631-f551-3559-ba88-aff49917d8fe",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/linalg\/_umath_linalg.cpython-311-darwin.so",
"name" : "_umath_linalg.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4377657344,
"size" : 81920,
"uuid" : "6c214dd2-6044-3285-949b-8d8ba72ca17b",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_ctypes.cpython-311-darwin.so",
"name" : "_ctypes.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4377509888,
"size" : 65536,
"uuid" : "340d4f4e-8cd4-3e24-9215-eb9235031bd3",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/core\/_multiarray_tests.cpython-311-darwin.so",
"name" : "_multiarray_tests.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4370382848,
"size" : 16384,
"uuid" : "c1a0a0c0-1986-3338-a63d-eb396e783c91",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_contextvars.cpython-311-darwin.so",
"name" : "_contextvars.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4377329664,
"size" : 98304,
"uuid" : "ad5b1457-a682-3233-ac84-0f75b349239d",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_pickle.cpython-311-darwin.so",
"name" : "_pickle.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4378492928,
"size" : 2670592,
"uuid" : "744b099b-9156-3efd-95ee-949f9bec068e",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/core\/_multiarray_umath.cpython-311-darwin.so",
"name" : "_multiarray_umath.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4485431296,
"size" : 21299200,
"uuid" : "9854a721-2573-3169-81ec-19ea40ce8077",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libopenblas64_.0.dylib",
"name" : "libopenblas64_.0.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4403298304,
"size" : 3522560,
"uuid" : "dd0e012a-b6de-31b1-a28e-260c7b51e595",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libgfortran.5.dylib",
"name" : "libgfortran.5.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4381818880,
"size" : 311296,
"uuid" : "6d39d54b-d80e-3218-a095-b81ad0b3be90",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libquadmath.0.dylib",
"name" : "libquadmath.0.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4370235392,
"size" : 65536,
"uuid" : "d9875303-8f38-33d9-a0d3-ab0adff3b915",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libgcc_s.1.1.dylib",
"name" : "libgcc_s.1.1.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4375805952,
"size" : 16384,
"uuid" : "6fbbcdd9-e49c-3a59-9ff0-32d41317e11c",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/arrays\/_arrays.cpython-311-darwin.so",
"name" : "_arrays.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4377853952,
"size" : 458752,
"uuid" : "3ef7d30f-bd93-3167-a91a-3f0a3f161d1b",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/arrays\/lib\/libarrays.dylib",
"name" : "libarrays.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4374331392,
"size" : 32768,
"uuid" : "d25f2f2d-a87d-3870-ad6a-3d977d50c9ca",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/select.cpython-311-darwin.so",
"name" : "select.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4374249472,
"size" : 16384,
"uuid" : "d685528c-5d21-3c1a-b720-81f8ba0b399a",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_posixsubprocess.cpython-311-darwin.so",
"name" : "_posixsubprocess.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4374167552,
"size" : 16384,
"uuid" : "9e9f3dfb-1383-3420-bfcf-d996842d8e9e",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/fcntl.cpython-311-darwin.so",
"name" : "fcntl.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4374052864,
"size" : 32768,
"uuid" : "167d8231-8346-37b6-9d67-149a1fe3df21",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_struct.cpython-311-darwin.so",
"name" : "_struct.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4373954560,
"size" : 32768,
"uuid" : "c4b2ad90-cc7d-3780-bee9-9f1dbc2aa560",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/binascii.cpython-311-darwin.so",
"name" : "binascii.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4373872640,
"size" : 16384,
"uuid" : "487467f0-5417-397f-8fb9-43ce116abec8",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_sha512.cpython-311-darwin.so",
"name" : "_sha512.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4370743296,
"size" : 16384,
"uuid" : "1eab426b-5d06-3a22-b7b5-6dbc112704d6",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_random.cpython-311-darwin.so",
"name" : "_random.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4370661376,
"size" : 16384,
"uuid" : "a97f3cfd-a5a7-3ce2-9eb6-5ebc0943bd1d",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_bisect.cpython-311-darwin.so",
"name" : "_bisect.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4374462464,
"size" : 196608,
"uuid" : "a4b86716-73ef-3046-b7ee-1d069dfd7cd0",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_lzma.cpython-311-darwin.so",
"name" : "_lzma.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4370579456,
"size" : 16384,
"uuid" : "dc7a591b-ef8a-3b77-9396-ecee27303fdb",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_bz2.cpython-311-darwin.so",
"name" : "_bz2.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4370464768,
"size" : 32768,
"uuid" : "65172ede-2b95-337d-970f-ed6c4a217cb1",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/zlib.cpython-311-darwin.so",
"name" : "zlib.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4368973824,
"size" : 16384,
"uuid" : "39aa96c6-b691-3e20-9540-292b9dd1c861",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_typing.cpython-311-darwin.so",
"name" : "_typing.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4368793600,
"size" : 81920,
"uuid" : "3b2e1e73-f5e1-3fa3-80b3-e46009060893",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_datetime.cpython-311-darwin.so",
"name" : "_datetime.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4369055744,
"size" : 49152,
"uuid" : "51d31d0d-1dcc-31ad-b6c1-73d57e544a3a",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/math.cpython-311-darwin.so",
"name" : "math.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4385406976,
"CFBundleShortVersionString" : "3.11.4, (c) 2001-2023 Python Software Foundation.",
"CFBundleIdentifier" : "org.python.python",
"size" : 3948544,
"uuid" : "88bffd37-99d8-36ab-9b95-9f54b30bd667",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/Python",
"name" : "Python",
"CFBundleVersion" : "3.11.4"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4366598144,
"CFBundleShortVersionString" : "1.8.0",
"CFBundleIdentifier" : "edu.ucsf.cgl.ChimeraX",
"size" : 16384,
"uuid" : "17982d98-65bc-3327-8526-577ec996453c",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/MacOS\/ChimeraX",
"name" : "ChimeraX",
"CFBundleVersion" : "1.8.0.0"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6810914816,
"size" : 241660,
"uuid" : "9b8b53f9-e2b6-36df-98e9-28d8fca732f2",
"path" : "\/usr\/lib\/system\/libsystem_kernel.dylib",
"name" : "libsystem_kernel.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6811156480,
"size" : 53248,
"uuid" : "386b0fc1-7873-3328-8e71-43269fd1b2c7",
"path" : "\/usr\/lib\/system\/libsystem_pthread.dylib",
"name" : "libsystem_pthread.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6809702400,
"size" : 520184,
"uuid" : "05b44e93-dffc-3bd8-90ab-fd97cb73f171",
"path" : "\/usr\/lib\/system\/libsystem_c.dylib",
"name" : "libsystem_c.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6811365376,
"size" : 32744,
"uuid" : "d5bbfc31-d52a-37d6-a41b-48638113ad4c",
"path" : "\/usr\/lib\/system\/libsystem_platform.dylib",
"name" : "libsystem_platform.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6810800128,
"size" : 114684,
"uuid" : "4ac7c5cd-3746-3a53-aad6-c231e183b705",
"path" : "\/usr\/lib\/libc++abi.dylib",
"name" : "libc++abi.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6807126016,
"size" : 327044,
"uuid" : "b326b2c3-1069-3d17-b49d-9dcb24efec6f",
"path" : "\/usr\/lib\/libobjc.A.dylib",
"name" : "libobjc.A.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6870966272,
"CFBundleShortVersionString" : "6.9",
"CFBundleIdentifier" : "com.apple.AppKit",
"size" : 20172800,
"uuid" : "61f710be-9132-3cc2-883d-066365fba1ad",
"path" : "\/System\/Library\/Frameworks\/AppKit.framework\/Versions\/C\/AppKit",
"name" : "AppKit",
"CFBundleVersion" : "2487.60.105"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6811582464,
"CFBundleShortVersionString" : "6.9",
"CFBundleIdentifier" : "com.apple.CoreFoundation",
"size" : 5083136,
"uuid" : "84b539d5-22c9-3f8c-84c8-903e9c7b8d29",
"path" : "\/System\/Library\/Frameworks\/CoreFoundation.framework\/Versions\/A\/CoreFoundation",
"name" : "CoreFoundation",
"CFBundleVersion" : "2503.1"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6987665408,
"CFBundleShortVersionString" : "2.1.1",
"CFBundleIdentifier" : "com.apple.HIToolbox",
"size" : 2899968,
"uuid" : "7db6c397-563f-3756-908c-e25b019a1848",
"path" : "\/System\/Library\/Frameworks\/Carbon.framework\/Versions\/A\/Frameworks\/HIToolbox.framework\/Versions\/A\/HIToolbox",
"name" : "HIToolbox"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6807453696,
"size" : 559640,
"uuid" : "37bbc384-0755-31c7-a808-0ed49e44dd8e",
"path" : "\/usr\/lib\/dyld",
"name" : "dyld"
},
{
"size" : 0,
"source" : "A",
"base" : 0,
"uuid" : "00000000-0000-0000-0000-000000000000"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6810222592,
"size" : 577528,
"uuid" : "ec33cd83-7098-3ad6-82c8-bc03ac81e87b",
"path" : "\/usr\/lib\/libc++.1.dylib",
"name" : "libc++.1.dylib"
}
],
"sharedCache" : {
"base" : 6806700032,
"size" : 4220698624,
"uuid" : "3406ad1b-2469-30eb-9863-5dce861e6dea"
},
"vmSummary" : "ReadOnly portion of Libraries: Total=1.5G resident=0K(0%) swapped_out_or_unallocated=1.5G(100%)\nWritable regions: Total=84.2G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=84.2G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 128K 1 \nActivity Tracing 256K 1 \nCG image 112K 5 \nColorSync 608K 30 \nCoreAnimation 752K 47 \nCoreGraphics 32K 2 \nCoreUI image data 3824K 27 \nFoundation 144K 3 \nKernel Alloc Once 32K 1 \nMALLOC 83.6G 350 \nMALLOC guard page 192K 12 \nMach message 64K 3 \nOpenGL GLSL 384K 4 \nSTACK GUARD 56.8M 51 \nStack 184.2M 51 \nVM_ALLOCATE 249.0M 166 \nVM_ALLOCATE (reserved) 192.0M 2 reserved VM address space (unallocated)\n__AUTH 2192K 402 \n__AUTH_CONST 31.7M 620 \n__CTF 824 1 \n__DATA 22.1M 770 \n__DATA_CONST 42.3M 779 \n__DATA_DIRTY 2024K 232 \n__FONT_DATA 2352 1 \n__GLSLBUILTINS 5174K 1 \n__INFO_FILTER 8 1 \n__LINKEDIT 562.9M 154 \n__OBJC_RO 71.9M 1 \n__OBJC_RW 2199K 1 \n__TEXT 940.3M 796 \ndyld private memory 320K 4 \nmapped file 211.6M 53 \nshared memory 3136K 25 \n=========== ======= ======= \nTOTAL 86.1G 4597 \nTOTAL, minus reserved VM space 85.9G 4597 \n",
"legacyInfo" : {
"threadTriggered" : {
"name" : "CrBrowserMain",
"queue" : "com.apple.main-thread"
}
},
"logWritingSignature" : "a083754281ca4e2f521faa14b00f71d31e642b3d",
"trialInfo" : {
"rollouts" : [
{
"rolloutId" : "63f9578e238e7b23a1f3030a",
"factorPackIds" : {
},
"deploymentId" : 240000005
},
{
"rolloutId" : "645c2d2f9e69a025b0a37e29",
"factorPackIds" : {
},
"deploymentId" : 240000003
}
],
"experiments" : [
]
}
}
Log:
UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
> open ../fitting1.cxs
Opened full.mrc as #5, grid size 128,128,128, pixel 13.3, shown at step 1,
values float32
Opened ref_CR_5.em scaled as #6, grid size 120,120,120, pixel 6.67, shown at
step 1, values float32
Opened ref_IR_5.em scaled as #7, grid size 120,120,120, pixel 6.67, shown at
step 1, values float32
Opened ref_NR_5.em scaled as #8, grid size 120,120,120, pixel 6.67, shown at
step 1, values float32
Opened box /M mark 1 M as #2, grid size 55,55,55, pixel 13.3, shown at step 1,
values float32
Opened box /M mark 1 M resampled as #4, grid size 120,120,120, pixel 6.67,
shown at step 1, values float32
Opened ref_mock_CR_cut_resampled.mrc as #3, grid size 55,55,55, pixel 13.3,
shown at step 1, values float32
Opened ref_mock_IR_cut_resampled.mrc as #9, grid size 55,55,55, pixel 13.3,
shown at step 1, values float32
Opened ref_mock_NR_cut_resampled.mrc as #10, grid size 55,55,55, pixel 13.3,
shown at step 1, values float32
Opened ref_mock_IR_cut_resampled.mrc copy as #11, grid size 55,55,55, pixel
13.3, shown at step 1, values float32
Opened ref_mock_IR_cut_resampled.mrc gaussian as #13, grid size 55,55,55,
pixel 13.3, shown at step 1, values float32
Opened ref_mock_CR_cut_resampled.mrc gaussian as #14, grid size 55,55,55,
pixel 13.3, shown at step 1, values float32
Opened ref_mock_NR_cut_resampled.mrc gaussian as #15, grid size 55,55,55,
pixel 13.3, shown at step 1, values float32
Opened ref_mock_IR_cut_resampled.mrc gaussian copy as #16, grid size 55,55,55,
pixel 13.3, shown at step 1, values float32
Opened ref_mock_IR_cut_resampled.mrc gaussian copy as #17, grid size 55,55,55,
pixel 13.3, shown at step 1, values float32
Opened ref_mock_CR_cut_resampled.mrc gaussian copy as #18, grid size 55,55,55,
pixel 13.3, shown at step 1, values float32
Opened ref_mock_CR_cut_resampled.mrc gaussian copy as #19, grid size 55,55,55,
pixel 13.3, shown at step 1, values float32
Opened ref_mock_NR_cut_resampled.mrc gaussian copy as #20, grid size 55,55,55,
pixel 13.3, shown at step 1, values float32
Opened ref_mock_NR_cut_resampled.mrc gaussian copy as #21, grid size 55,55,55,
pixel 13.3, shown at step 1, values float32
Opened ref_s114_8_symmetrized.em scaled as #22, grid size 128,128,128, pixel
13.3, shown at step 1, values float32
Opened ref_s127_8_symmetrized.em scaled as #23, grid size 128,128,128, pixel
13.3, shown at level 0.025, step 1, values float32
Opened ref_s140_8_symmetrized.em scaled as #24, grid size 128,128,128, pixel
13.3, shown at step 1, values float32
Opened ref_s162_8_symmetrized.em scaled as #25, grid size 128,128,128, pixel
13.3, shown at step 1, values float32
Opened ref_s200_8_symmetrized.em scaled as #26, grid size 128,128,128, pixel
13.3, shown at step 1, values float32
Opened ref_s114_8_symmetrized.em scaled gaussian10 as #27, grid size
128,128,128, pixel 13.3, shown at step 1, values float32
Opened ref_s127_8_symmetrized.em scaled gaussian10 as #28, grid size
128,128,128, pixel 13.3, shown at step 1, values float32
Opened ref_s140_8_symmetrized.em scaled gaussian15 as #29, grid size
128,128,128, pixel 13.3, shown at step 1, values float32
Opened ref_s140_8_symmetrized.em scaled gaussian30 as #30, grid size
128,128,128, pixel 13.3, shown at step 1, values float32
Opened ref_s162_8_symmetrized.em scaled gaussian30 as #31, grid size
128,128,128, pixel 13.3, shown at step 1, values float32
Opened ref_s200_8_symmetrized.em scaled gaussian30 as #32, grid size
128,128,128, pixel 13.3, shown at step 1, values float32
Log from Sat Feb 15 22:04:14 2025UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
> open ../fitting.cxs
Opened full.mrc as #5, grid size 128,128,128, pixel 13.3, shown at level
0.0265, step 1, values float32
Opened ref_CR_5.em scaled as #6, grid size 120,120,120, pixel 6.67, shown at
level 0.0996, step 1, values float32
Opened ref_IR_5.em scaled as #7, grid size 120,120,120, pixel 6.67, shown at
level 0.0648, step 1, values float32
Opened ref_NR_5.em scaled as #8, grid size 120,120,120, pixel 6.67, shown at
level 0.0861, step 1, values float32
Opened box /M mark 1 M as #2, grid size 55,55,55, pixel 13.3, shown at level
0.0851, step 1, values float32
Opened box /M mark 1 M resampled as #4, grid size 120,120,120, pixel 6.67,
shown at level 0.0851, step 1, values float32
Opened ref_mock_CR_cut_resampled.mrc as #3, grid size 55,55,55, pixel 13.3,
shown at level 0.0996, step 1, values float32
Opened ref_mock_IR_cut_resampled.mrc as #9, grid size 55,55,55, pixel 13.3,
shown at level 0.0668, step 1, values float32
Opened ref_mock_NR_cut_resampled.mrc as #10, grid size 55,55,55, pixel 13.3,
shown at level 0.0561, step 1, values float32
Opened ref_mock_IR_cut_resampled.mrc copy as #11, grid size 55,55,55, pixel
13.3, shown at level 0.0643, step 1, values float32
Opened ref_mock_IR_cut_resampled.mrc gaussian as #13, grid size 55,55,55,
pixel 13.3, shown at level 0.0113, step 1, values float32
Opened ref_mock_CR_cut_resampled.mrc gaussian as #14, grid size 55,55,55,
pixel 13.3, shown at level 0.0119, step 1, values float32
Opened ref_mock_NR_cut_resampled.mrc gaussian as #15, grid size 55,55,55,
pixel 13.3, shown at level 0.0508, step 1, values float32
Opened ref_mock_IR_cut_resampled.mrc gaussian copy as #16, grid size 55,55,55,
pixel 13.3, shown at level 0.0431, step 1, values float32
Opened ref_mock_IR_cut_resampled.mrc gaussian copy as #17, grid size 55,55,55,
pixel 13.3, shown at level 0.0431, step 1, values float32
Opened ref_mock_CR_cut_resampled.mrc gaussian copy as #18, grid size 55,55,55,
pixel 13.3, shown at level 0.0527, step 1, values float32
Opened ref_mock_CR_cut_resampled.mrc gaussian copy as #19, grid size 55,55,55,
pixel 13.3, shown at level 0.0527, step 1, values float32
Opened ref_mock_NR_cut_resampled.mrc gaussian copy as #20, grid size 55,55,55,
pixel 13.3, shown at level 0.0508, step 1, values float32
Opened ref_mock_NR_cut_resampled.mrc gaussian copy as #21, grid size 55,55,55,
pixel 13.3, shown at level 0.0508, step 1, values float32
Opened ref_s114_8_symmetrized.em scaled as #22, grid size 128,128,128, pixel
13.3, shown at level 0.0515, step 1, values float32
Opened ref_s127_8_symmetrized.em scaled as #23, grid size 128,128,128, pixel
13.3, shown at level 0.0553, step 1, values float32
Opened ref_s140_8_symmetrized.em scaled as #24, grid size 128,128,128, pixel
13.3, shown at level 0.0645, step 1, values float32
Opened ref_s162_8_symmetrized.em scaled as #25, grid size 128,128,128, pixel
13.3, shown at level 0.0709, step 1, values float32
Opened ref_s200_8_symmetrized.em scaled as #26, grid size 128,128,128, pixel
13.3, shown at level 0.107, step 1, values float32
Opened ref_s114_8_symmetrized.em scaled gaussian10 as #27, grid size
128,128,128, pixel 13.3, shown at level 0.0423, step 1, values float32
Opened ref_s127_8_symmetrized.em scaled gaussian10 as #28, grid size
128,128,128, pixel 13.3, shown at level 0.0417, step 1, values float32
Opened ref_s140_8_symmetrized.em scaled gaussian15 as #29, grid size
128,128,128, pixel 13.3, shown at level 0.0319, step 1, values float32
Opened ref_s140_8_symmetrized.em scaled gaussian30 as #30, grid size
128,128,128, pixel 13.3, shown at level 0.0274, step 1, values float32
Opened ref_s162_8_symmetrized.em scaled gaussian30 as #31, grid size
128,128,128, pixel 13.3, shown at level 0.0122, step 1, values float32
Opened ref_s200_8_symmetrized.em scaled gaussian30 as #32, grid size
128,128,128, pixel 13.3, shown at level 0.0206, step 1, values float32
Log from Sat Dec 7 12:59:06 2024UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
> open mock_maps.cxs
Opened full.mrc as #5, grid size 128,128,128, pixel 13.3, shown at level
0.0265, step 1, values float32
Opened ref_CR_5.em scaled as #6, grid size 120,120,120, pixel 6.67, shown at
level 0.0996, step 1, values float32
Opened ref_IR_5.em scaled as #7, grid size 120,120,120, pixel 6.67, shown at
level 0.0648, step 1, values float32
Opened ref_NR_5.em scaled as #8, grid size 120,120,120, pixel 6.67, shown at
level 0.0861, step 1, values float32
Opened box /M mark 1 M as #2, grid size 55,55,55, pixel 13.3, shown at level
0.0851, step 1, values float32
Opened box /M mark 1 M resampled as #4, grid size 120,120,120, pixel 6.67,
shown at level 0.0851, step 1, values float32
Opened ref_mock_CR_cut_resampled.mrc as #3, grid size 55,55,55, pixel 13.3,
shown at level 0.0996, step 1, values float32
Opened ref_mock_IR_cut_resampled.mrc as #9, grid size 55,55,55, pixel 13.3,
shown at level 0.0668, step 1, values float32
Opened ref_mock_NR_cut_resampled.mrc as #10, grid size 55,55,55, pixel 13.3,
shown at level 0.0561, step 1, values float32
Opened ref_mock_IR_cut_resampled.mrc copy as #11, grid size 55,55,55, pixel
13.3, shown at level 0.0643, step 1, values float32
Opened ref_mock_IR_cut_resampled.mrc gaussian as #13, grid size 55,55,55,
pixel 13.3, shown at level 0.0113, step 1, values float32
Opened ref_mock_CR_cut_resampled.mrc gaussian as #14, grid size 55,55,55,
pixel 13.3, shown at level 0.0119, step 1, values float32
Opened ref_mock_NR_cut_resampled.mrc gaussian as #15, grid size 55,55,55,
pixel 13.3, shown at level 0.0508, step 1, values float32
Opened ref_mock_IR_cut_resampled.mrc gaussian copy as #16, grid size 55,55,55,
pixel 13.3, shown at level 0.0431, step 1, values float32
Opened ref_mock_IR_cut_resampled.mrc gaussian copy as #17, grid size 55,55,55,
pixel 13.3, shown at level 0.0431, step 1, values float32
Opened ref_mock_CR_cut_resampled.mrc gaussian copy as #18, grid size 55,55,55,
pixel 13.3, shown at level 0.0527, step 1, values float32
Opened ref_mock_CR_cut_resampled.mrc gaussian copy as #19, grid size 55,55,55,
pixel 13.3, shown at level 0.0527, step 1, values float32
Opened ref_mock_NR_cut_resampled.mrc gaussian copy as #20, grid size 55,55,55,
pixel 13.3, shown at level 0.0508, step 1, values float32
Opened ref_mock_NR_cut_resampled.mrc gaussian copy as #21, grid size 55,55,55,
pixel 13.3, shown at level 0.0508, step 1, values float32
Log from Sat Dec 7 09:38:15 2024UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
> open cutting_rigid_bodies.cxs
Opened full.mrc as #5, grid size 128,128,128, pixel 13.3, shown at level
0.0265, step 1, values float32
Opened ref_CR_5.em scaled as #6, grid size 120,120,120, pixel 6.67, shown at
level 0.0996, step 1, values float32
Opened ref_IR_5.em scaled as #7, grid size 120,120,120, pixel 6.67, shown at
level 0.0866, step 1, values float32
Opened ref_NR_5.em scaled as #8, grid size 120,120,120, pixel 6.67, shown at
level 0.0861, step 1, values float32
Opened box /M mark 1 M as #2, grid size 55,55,55, pixel 13.3, shown at level
0.0851, step 1, values float32
Opened box /M mark 1 M resampled as #4, grid size 120,120,120, pixel 6.67,
shown at level 0.0851, step 1, values float32
Opened ref_mock_CR_cut_resampled.mrc as #3, grid size 55,55,55, pixel 13.3,
shown at level 0.0996, step 1, values float32
Opened ref_mock_IR_cut_resampled.mrc as #9, grid size 55,55,55, pixel 13.3,
shown at level 0.0668, step 1, values float32
Opened ref_mock_NR_cut_resampled.mrc as #10, grid size 55,55,55, pixel 13.3,
shown at level 0.0561, step 1, values float32
Opened ref_mock_IR_cut_resampled.mrc copy as #11, grid size 55,55,55, pixel
13.3, shown at level 0.0643, step 1, values float32
Opened CR_map 20 as #25, grid size 77,120,72, pixel 6.67, shown at level
0.0439, step 1, values float32
Opened NRmap 20 as #34, grid size 68,120,66, pixel 6.67, shown at level
0.0471, step 1, values float32
Opened IRmap 20 as #44, grid size 60,81,62, pixel 6.67, shown at level 0.0418,
step 1, values float32
Opened ref_mock_CR_cut_resampled.mrc gaussian as #47, grid size 55,55,55,
pixel 13.3, shown at level 0.0119, step 1, values float32
Opened ref_mock_IR_cut_resampled.mrc gaussian as #46, grid size 55,55,55,
pixel 13.3, shown at level 0.0113, step 1, values float32
Opened ref_mock_NR_cut_resampled.mrc gaussian as #48, grid size 55,55,55,
pixel 13.3, shown at level 0.0508, step 1, values float32
Opened ref_mock_IR_cut_resampled.mrc gaussian copy as #49, grid size 55,55,55,
pixel 13.3, shown at level 0.0431, step 1, values float32
Opened ref_mock_IR_cut_resampled.mrc gaussian copy as #50, grid size 55,55,55,
pixel 13.3, shown at level 0.0431, step 1, values float32
Opened ref_mock_CR_cut_resampled.mrc gaussian copy as #51, grid size 55,55,55,
pixel 13.3, shown at level 0.0527, step 1, values float32
Opened ref_mock_CR_cut_resampled.mrc gaussian copy as #52, grid size 55,55,55,
pixel 13.3, shown at level 0.0527, step 1, values float32
Opened ref_mock_NR_cut_resampled.mrc gaussian copy as #53, grid size 55,55,55,
pixel 13.3, shown at level 0.0508, step 1, values float32
Opened ref_mock_NR_cut_resampled.mrc gaussian copy as #54, grid size 55,55,55,
pixel 13.3, shown at level 0.0508, step 1, values float32
Opened volume sum as #82, grid size 55,55,55, pixel 13.3, shown at level
0.0782, step 1, values float32
Opened volume sum as #85, grid size 112,117,59, pixel 13.3, shown at level
0.0744, step 1, values float32
Log from Sat Nov 16 20:51:36 2024UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
> open cutting_rigid_bodies.cxs
Opened full.mrc as #5, grid size 128,128,128, pixel 13.3, shown at level
0.0851, step 1, values float32
Opened ref_CR_5.em scaled as #6, grid size 120,120,120, pixel 6.67, shown at
level 0.0996, step 1, values float32
Opened ref_IR_5.em scaled as #7, grid size 120,120,120, pixel 6.67, shown at
level 0.0866, step 1, values float32
Opened ref_NR_5.em scaled as #8, grid size 120,120,120, pixel 6.67, shown at
level 0.0861, step 1, values float32
Opened box /M mark 1 M as #2, grid size 55,55,55, pixel 13.3, shown at level
0.0851, step 1, values float32
Opened box /M mark 1 M resampled as #4, grid size 120,120,120, pixel 6.67,
shown at level 0.0851, step 1, values float32
Opened ref_mock_CR_cut_resampled.mrc as #3, grid size 55,55,55, pixel 13.3,
shown at level 0.0996, step 1, values float32
Opened ref_mock_IR_cut_resampled.mrc as #9, grid size 55,55,55, pixel 13.3,
shown at level 0.0668, step 1, values float32
Opened ref_mock_NR_cut_resampled.mrc as #10, grid size 55,55,55, pixel 13.3,
shown at level 0.0561, step 1, values float32
Opened ref_mock_IR_cut_resampled.mrc copy as #11, grid size 55,55,55, pixel
13.3, shown at level 0.0643, step 1, values float32
Opened CR_map 20 as #25, grid size 77,120,72, pixel 6.67, shown at level
0.0439, step 1, values float32
Opened NRmap 20 as #34, grid size 68,120,66, pixel 6.67, shown at level
0.0471, step 1, values float32
Opened IRmap 20 as #44, grid size 60,81,62, pixel 6.67, shown at level 0.0418,
step 1, values float32
Opened ref_mock_CR_cut_resampled.mrc gaussian as #47, grid size 55,55,55,
pixel 13.3, shown at level 0.0527, step 1, values float32
Opened ref_mock_IR_cut_resampled.mrc gaussian as #46, grid size 55,55,55,
pixel 13.3, shown at level 0.019, step 1, values float32
Opened ref_mock_NR_cut_resampled.mrc gaussian as #48, grid size 55,55,55,
pixel 13.3, shown at level 0.0508, step 1, values float32
Opened ref_mock_IR_cut_resampled.mrc gaussian copy as #49, grid size 55,55,55,
pixel 13.3, shown at level 0.0431, step 1, values float32
Opened ref_mock_IR_cut_resampled.mrc gaussian copy as #50, grid size 55,55,55,
pixel 13.3, shown at level 0.0431, step 1, values float32
Opened ref_mock_CR_cut_resampled.mrc gaussian copy as #51, grid size 55,55,55,
pixel 13.3, shown at level 0.0527, step 1, values float32
Opened ref_mock_CR_cut_resampled.mrc gaussian copy as #52, grid size 55,55,55,
pixel 13.3, shown at level 0.0527, step 1, values float32
Opened ref_mock_NR_cut_resampled.mrc gaussian copy as #53, grid size 55,55,55,
pixel 13.3, shown at level 0.0508, step 1, values float32
Opened ref_mock_NR_cut_resampled.mrc gaussian copy as #54, grid size 55,55,55,
pixel 13.3, shown at level 0.0508, step 1, values float32
Opened volume sum as #82, grid size 55,55,55, pixel 13.3, shown at level
0.0782, step 1, values float32
Opened volume sum as #85, grid size 112,117,59, pixel 13.3, shown at level
0.0964, step 1, values float32
Log from Sat Nov 16 19:30:18 2024UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
> open 11-11-24_CR_NR_IRfit_(2023-11_15_mock_densityPrepModelling_bin4-on-
> bin2_structureFitting).cxs
Opened full.mrc as #5, grid size 128,128,128, pixel 13.3, shown at level
0.0851, step 1, values float32
Opened ref_CR_5.em scaled as #6, grid size 120,120,120, pixel 6.67, shown at
level 0.0996, step 1, values float32
Opened ref_IR_5.em scaled as #7, grid size 120,120,120, pixel 6.67, shown at
level 0.0866, step 1, values float32
Opened ref_NR_5.em scaled as #8, grid size 120,120,120, pixel 6.67, shown at
level 0.0861, step 1, values float32
Opened box /M mark 1 M as #2, grid size 55,55,55, pixel 13.3, shown at level
0.0851, step 1, values float32
Opened box /M mark 1 M resampled as #4, grid size 120,120,120, pixel 6.67,
shown at level 0.0851, step 1, values float32
Opened ref_mock_CR_cut_resampled.mrc as #3, grid size 55,55,55, pixel 13.3,
shown at level 0.0996, step 1, values float32
Opened ref_mock_IR_cut_resampled.mrc as #9, grid size 55,55,55, pixel 13.3,
shown at level 0.0668, step 1, values float32
Opened ref_mock_NR_cut_resampled.mrc as #10, grid size 55,55,55, pixel 13.3,
shown at level 0.0561, step 1, values float32
Opened ref_mock_IR_cut_resampled.mrc copy as #11, grid size 55,55,55, pixel
13.3, shown at level 0.0643, step 1, values float32
Opened CR_map 20 as #25, grid size 77,120,72, pixel 6.67, shown at level
0.0439, step 1, values float32
Opened NRmap 20 as #34, grid size 68,120,66, pixel 6.67, shown at level
0.0471, step 1, values float32
Opened IRmap 20 as #44, grid size 60,81,62, pixel 6.67, shown at level 0.0418,
step 1, values float32
Opened ref_mock_CR_cut_resampled.mrc gaussian as #47, grid size 55,55,55,
pixel 13.3, shown at level 0.0527, step 1, values float32
Opened ref_mock_IR_cut_resampled.mrc gaussian as #46, grid size 55,55,55,
pixel 13.3, shown at level 0.0431, step 1, values float32
Opened ref_mock_NR_cut_resampled.mrc gaussian as #48, grid size 55,55,55,
pixel 13.3, shown at level 0.0508, step 1, values float32
Opened ref_mock_IR_cut_resampled.mrc gaussian copy as #49, grid size 55,55,55,
pixel 13.3, shown at level 0.0431, step 1, values float32
Opened ref_mock_IR_cut_resampled.mrc gaussian copy as #50, grid size 55,55,55,
pixel 13.3, shown at level 0.0431, step 1, values float32
Opened ref_mock_CR_cut_resampled.mrc gaussian copy as #51, grid size 55,55,55,
pixel 13.3, shown at level 0.0527, step 1, values float32
Opened ref_mock_CR_cut_resampled.mrc gaussian copy as #52, grid size 55,55,55,
pixel 13.3, shown at level 0.0527, step 1, values float32
Opened ref_mock_NR_cut_resampled.mrc gaussian copy as #53, grid size 55,55,55,
pixel 13.3, shown at level 0.0508, step 1, values float32
Opened ref_mock_NR_cut_resampled.mrc gaussian copy as #54, grid size 55,55,55,
pixel 13.3, shown at level 0.0508, step 1, values float32
Log from Mon Nov 11 13:29:20 2024UCSF ChimeraX version: 1.8rc202405230136
(2024-05-23)
© 2016-2024 Regents of the University of California. All rights reserved.
> open
> E:/ownCloud/Manuscripts/FluNPC/Modelling/mock/2023-11_15_mock_densityPrepModelling_bin4-on-
> bin2_structureFitting.cxs
Opened full.mrc as #5, grid size 128,128,128, pixel 13.3, shown at level
0.0851, step 1, values float32
Opened ref_CR_5.em scaled as #6, grid size 120,120,120, pixel 6.67, shown at
level 0.0996, step 1, values float32
Opened ref_IR_5.em scaled as #7, grid size 120,120,120, pixel 6.67, shown at
level 0.0866, step 1, values float32
Opened ref_NR_5.em scaled as #8, grid size 120,120,120, pixel 6.67, shown at
level 0.0861, step 1, values float32
Opened box /M mark 1 M as #2, grid size 55,55,55, pixel 13.3, shown at level
0.0851, step 1, values float32
Opened box /M mark 1 M resampled as #4, grid size 120,120,120, pixel 6.67,
shown at level 0.0851, step 1, values float32
Opened ref_mock_CR_cut_resampled.mrc as #3, grid size 55,55,55, pixel 13.3,
shown at level 0.0996, step 1, values float32
Opened ref_mock_IR_cut_resampled.mrc as #9, grid size 55,55,55, pixel 13.3,
shown at level 0.0866, step 1, values float32
Opened ref_mock_NR_cut_resampled.mrc as #10, grid size 55,55,55, pixel 13.3,
shown at level 0.0861, step 1, values float32
Opened ref_mock_IR_cut_resampled.mrc copy as #11, grid size 55,55,55, pixel
13.3, shown at level 0.0866, step 1, values float32
Log from Mon Sep 23 14:46:37 2024UCSF ChimeraX version: 1.8rc202405230136
(2024-05-23)
© 2016-2024 Regents of the University of California. All rights reserved.
> open
> E:/ownCloud/Manuscripts/FluNPC/Modelling/mock/2023-11_15_mock_densityPrepModelling_bin4-on-
> bin2.cxs
Opened full.mrc as #5, grid size 128,128,128, pixel 13.3, shown at level
0.0851, step 1, values float32
Opened ref_CR_5.em scaled as #6, grid size 120,120,120, pixel 6.67, shown at
level 0.0996, step 1, values float32
Opened ref_IR_5.em scaled as #7, grid size 120,120,120, pixel 6.67, shown at
level 0.0866, step 1, values float32
Opened ref_NR_5.em scaled as #8, grid size 120,120,120, pixel 6.67, shown at
level 0.0861, step 1, values float32
Opened box /M mark 1 M as #2, grid size 55,55,55, pixel 13.3, shown at level
0.0851, step 1, values float32
Opened box /M mark 1 M resampled as #4, grid size 120,120,120, pixel 6.67,
shown at level 0.0851, step 1, values float32
Opened ref_mock_CR_cut_resampled.mrc as #3, grid size 55,55,55, pixel 13.3,
shown at level 0.0996, step 1, values float32
Opened ref_mock_IR_cut_resampled.mrc as #9, grid size 55,55,55, pixel 13.3,
shown at level 0.0866, step 1, values float32
Opened ref_mock_NR_cut_resampled.mrc as #10, grid size 55,55,55, pixel 13.3,
shown at level 0.0861, step 1, values float32
Opened ref_mock_IR_cut_resampled.mrc copy as #11, grid size 55,55,55, pixel
13.3, shown at level 0.0866, step 1, values float32
Log from Fri Nov 17 14:58:14 2023
> lighting soft
UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> //kosinski.embl.de/kosinski/ziemianowicz/cryoET/subtomo/novaSTA/mock/bin4/fullAlign/ref_3_symmetrized.em
Opened ref_3_symmetrized.em as #1, grid size 128,128,128, pixel 1, shown at
level 0.075, step 1, values float32
> open
> //kosinski.embl.de/kosinski/ziemianowicz/cryoET/subtomo/novaSTA/mock/bin2/refs_final/ref_CR_5.em
Opened ref_CR_5.em as #2, grid size 120,120,120, pixel 1, shown at level
0.0845, step 1, values float32
> open
> //kosinski.embl.de/kosinski/ziemianowicz/cryoET/subtomo/novaSTA/mock/bin2/refs_final/ref_IR_5.em
Opened ref_IR_5.em as #3, grid size 120,120,120, pixel 1, shown at level
0.0778, step 1, values float32
> open
> //kosinski.embl.de/kosinski/ziemianowicz/cryoET/subtomo/novaSTA/mock/bin2/refs_final/ref_NR_5.em
Opened ref_NR_5.em as #4, grid size 120,120,120, pixel 1, shown at level
0.0771, step 1, values float32
> volume scale #1-18 factor -1
Opened ref_3_symmetrized.em scaled as #5, grid size 128,128,128, pixel 1,
shown at step 1, values float32
Opened ref_CR_5.em scaled as #6, grid size 120,120,120, pixel 1, shown at step
1, values float32
Opened ref_IR_5.em scaled as #7, grid size 120,120,120, pixel 1, shown at step
1, values float32
Opened ref_NR_5.em scaled as #8, grid size 120,120,120, pixel 1, shown at step
1, values float32
> surface dust #5 size 10
> surface dust #6 size 10
> surface dust #7 size 10
> surface dust #8 size 10
> close #1-4
> volume #6-8 voxelSize 6.672
> volume #5 voxelSize 13.344
> surface dust #5 size 133
> surface dust #6 size 66.7
> surface dust #7 size 66.7
> surface dust #8 size 66.7
> volume #5 level 0.05942
> volume #5 level 0.08509
> volume #5 color #b2b2b264
> lighting simple
> lighting soft
> lighting full
> lighting soft
> ui mousemode right select
> select #6
2 models selected
> ui mousemode right translate
> ui mousemode right select
> select #6
2 models selected
> select add #6
2 models selected
> ui mousemode right "translate selected models"
> view matrix models #6,1,0,0,65.465,0,1,0,233.44,0,0,1,752.29
> view matrix models #6,1,0,0,433.39,0,1,0,624.73,0,0,1,1049.2
> view matrix models #6,1,0,0,394.29,0,1,0,515.34,0,0,1,832.62
> view matrix models #6,1,0,0,887.19,0,1,0,683.01,0,0,1,767.54
> view matrix models #6,1,0,0,851.25,0,1,0,722.48,0,0,1,726.53
> ui mousemode right "rotate selected models"
> view matrix models
> #6,0.99935,0.031179,-0.018259,846.19,-0.025046,0.962,0.27189,645.24,0.026042,-0.27126,0.96215,836.26
> view matrix models
> #6,0.98497,0.054119,-0.16406,897.27,-0.026896,0.98612,0.16382,676.95,0.17065,-0.15695,0.97275,732.43
> view matrix models
> #6,0.81681,-0.57627,0.027167,1135.5,0.5696,0.7981,-0.19645,656.29,0.091528,0.17594,0.98014,630.44
> view matrix models
> #6,0.83083,-0.55578,0.028688,1121.6,0.55079,0.81381,-0.18532,653.22,0.079651,0.16977,0.98226,636.59
> view matrix models
> #6,0.83101,-0.55238,0.065626,1106.4,0.55277,0.83322,0.013683,570.53,-0.062239,0.024906,0.99775,741.52
> ui mousemode right "translate selected models"
> view matrix models
> #6,0.83101,-0.55238,0.065626,1077.2,0.55277,0.83322,0.013683,622.18,-0.062239,0.024906,0.99775,732.27
> ui tool show "Volume Viewer"
> ui tool show "Fit in Map"
> fitmap #6 inMap #5
Fit map ref_CR_5.em scaled in map ref_3_symmetrized.em scaled using 17265
points
correlation = 0.9298, correlation about mean = 0.2619, overlap = 260.9
steps = 88, shift = 19, angle = 11.6 degrees
Position of ref_CR_5.em scaled (#6) relative to ref_3_symmetrized.em scaled
(#5) coordinates:
Matrix rotation and translation
0.70727792 -0.70664600 0.02023306 1190.07123996
0.70627557 0.70756458 0.02296068 621.15883476
-0.03054127 -0.00194947 0.99953161 719.94110053
Axis -0.01761614 0.03590695 0.99919986
Axis point -117.87606667 1750.90808711 0.00000000
Rotation angle (degrees) 44.99349562
Shift along axis 720.70450680
> fitmap #6 inMap #5
Fit map ref_CR_5.em scaled in map ref_3_symmetrized.em scaled using 17265
points
correlation = 0.9298, correlation about mean = 0.2616, overlap = 260.9
steps = 44, shift = 0.211, angle = 0.0208 degrees
Position of ref_CR_5.em scaled (#6) relative to ref_3_symmetrized.em scaled
(#5) coordinates:
Matrix rotation and translation
0.70743731 -0.70648142 0.02040710 1189.83812540
0.70611750 0.70772961 0.02273492 621.23939272
-0.03050450 -0.00167372 0.99953323 720.02969492
Axis -0.01726545 0.03601234 0.99920219
Axis point -118.33151803 1750.80444584 0.00000000
Rotation angle (degrees) 44.98028289
Shift along axis 721.28443697
> select subtract #6
Nothing selected
> show #!7 models
> select add #7
2 models selected
> view matrix models #7,1,0,0,993.82,0,1,0,910.79,0,0,1,24.108
> view matrix models #7,1,0,0,949.46,0,1,0,804.57,0,0,1,497.41
> view matrix models #7,1,0,0,890.84,0,1,0,762.68,0,0,1,499.5
> view matrix models #7,1,0,0,874.5,0,1,0,794.18,0,0,1,501.78
> view matrix models #7,1,0,0,865.69,0,1,0,800.95,0,0,1,506.7
> fitmap #7 inMap #5
Fit map ref_IR_5.em scaled in map ref_3_symmetrized.em scaled using 17277
points
correlation = 0.874, correlation about mean = 0.1431, overlap = 161.8
steps = 180, shift = 67.7, angle = 43.7 degrees
Position of ref_IR_5.em scaled (#7) relative to ref_3_symmetrized.em scaled
(#5) coordinates:
Matrix rotation and translation
0.72328504 -0.69008663 0.02528236 1177.30591349
0.68992275 0.72370363 0.01611364 625.61885751
-0.02941674 0.00578812 0.99955048 463.62919779
Axis -0.00747613 0.03960455 0.99918746
Axis point -167.14577322 1778.24112269 0.00000000
Rotation angle (degrees) 43.67491364
Shift along axis 479.22815036
> fitmap #7 inMap #5
Fit map ref_IR_5.em scaled in map ref_3_symmetrized.em scaled using 17277
points
correlation = 0.874, correlation about mean = 0.1432, overlap = 161.8
steps = 44, shift = 0.0249, angle = 0.00626 degrees
Position of ref_IR_5.em scaled (#7) relative to ref_3_symmetrized.em scaled
(#5) coordinates:
Matrix rotation and translation
0.72327539 -0.69009276 0.02539085 1177.26818010
0.68992969 0.72369714 0.01610813 625.62053605
-0.02949139 0.00586728 0.99954781 463.65430075
Axis -0.00741472 0.03973659 0.99918268
Axis point -167.08172624 1778.10655962 0.00000000
Rotation angle (degrees) 43.67569370
Shift along axis 479.40625636
> show #!8 models
> select add #8
4 models selected
> select subtract #7
2 models selected
> view matrix models #8,1,0,0,918.09,0,1,0,306.75,0,0,1,24.317
> view matrix models #8,1,0,0,746.38,0,1,0,588.1,0,0,1,47.036
> view matrix models #8,1,0,0,754.92,0,1,0,600.15,0,0,1,47.942
> ui mousemode right "rotate selected models"
> view matrix models
> #8,0.96728,-0.0021556,-0.2537,885.46,-0.006992,0.99936,-0.03515,619.43,0.25361,0.035774,0.96665,-60.777
> view matrix models
> #8,0.7683,-0.60469,-0.20991,1203.3,0.58701,0.79638,-0.14558,499.58,0.25519,-0.011369,0.96682,-41.799
> ui mousemode right "translate selected models"
> view matrix models
> #8,0.7683,-0.60469,-0.20991,1110.2,0.58701,0.79638,-0.14558,604.05,0.25519,-0.011369,0.96682,158.6
> view matrix models
> #8,0.7683,-0.60469,-0.20991,1168.8,0.58701,0.79638,-0.14558,679.59,0.25519,-0.011369,0.96682,212.26
> view matrix models
> #8,0.7683,-0.60469,-0.20991,1161.9,0.58701,0.79638,-0.14558,686.87,0.25519,-0.011369,0.96682,159.99
> fitmap #8 inMap #5
Fit map ref_NR_5.em scaled in map ref_3_symmetrized.em scaled using 17265
points
correlation = 0.8614, correlation about mean = 0.1839, overlap = 162.4
steps = 92, shift = 61.1, angle = 16.5 degrees
Position of ref_NR_5.em scaled (#8) relative to ref_3_symmetrized.em scaled
(#5) coordinates:
Matrix rotation and translation
0.71339429 -0.70072086 0.00767191 1184.92544062
0.70076265 0.71335978 -0.00703776 632.46152513
-0.00054133 0.01039689 0.99994580 220.80756395
Axis 0.01243896 0.00585984 0.99990546
Axis point -180.39752481 1760.54784459 0.00000000
Rotation angle (degrees) 44.49186656
Shift along axis 239.23205658
> measure symmetry #5
Symmetry ref_3_symmetrized.em scaled: C8, center 64 64 65
> hide #!8 models
> hide #!7 models
> hide #!6 models
> select subtract #8
Nothing selected
> ui mousemode right select
> ui mousemode right "mark point"
> view orient
> ui tool show "Side View"
> show #!6 models
> hide #!6 models
> show #!6 models
> hide #!6 models
> marker #1 position 1396,1338,851.9 color yellow radius 1
> marker #1 position 1406,1323,827.2 color yellow radius 1
> marker change #1:2 radius 10
> close #1
> color #5 #b2b2b2ff models
> show #!6 models
> hide #!6 models
> show #!6 models
> hide #!6 models
> marker #1 position 1396,1337,835.5 color yellow radius 10
> hide #!5 models
> show #!5 models
> color #5 #b2b2b264 models
> marker #1 position 1380,1350,807.3 color yellow radius 10
> close #1
> color #5 #b2b2b2ff models
> marker #1 position 1386,1344,823.1 color yellow radius 10
> color #5 #b2b2b264 models
> ui mousemode right "translate selected models"
> view matrix models #1,1,0,0,-180.45,0,1,0,-168.01,0,0,1,27.149
> view matrix models #1,1,0,0,-215.9,0,1,0,-185.04,0,0,1,-5.4459
> show #!7 models
> hide #!7 models
> view matrix models #1,1,0,0,-194.82,0,1,0,-206.59,0,0,1,25.838
> view matrix models #1,1,0,0,-189.62,0,1,0,-197.73,0,0,1,26.014
> volume boxes #5 centers #1 size 700
Opened box /M mark 1 M as #2, grid size 55,55,55, pixel 13.3, shown at level
0.0851, step 1, values float32
> hide #!5 models
> hide #1 models
> show #1 models
> show #!6 models
> show #!8 models
> show #!7 models
> fitmap #6 inMap #2
Fit map ref_CR_5.em scaled in map box /M mark 1 M using 17265 points
correlation = 0.9286, correlation about mean = 0.2666, overlap = 260
steps = 44, shift = 0.0809, angle = 0.0782 degrees
Position of ref_CR_5.em scaled (#6) relative to box /M mark 1 M (#2)
coordinates:
Matrix rotation and translation
0.70688736 -0.70705566 0.01955915 1190.58156412
0.70671431 0.70715572 0.02203786 621.41005917
-0.02941336 -0.00175555 0.99956579 719.59776936
Axis -0.01681729 0.03461400 0.99925925
Axis point -118.75387268 1750.22651276 0.00000000
Rotation angle (degrees) 45.02449329
Shift along axis 720.55185477
> fitmap #7 inMap #2
Fit map ref_IR_5.em scaled in map box /M mark 1 M using 17277 points
correlation = 0.8694, correlation about mean = 0.1533, overlap = 160
steps = 40, shift = 0.148, angle = 0.0655 degrees
Position of ref_IR_5.em scaled (#7) relative to box /M mark 1 M (#2)
coordinates:
Matrix rotation and translation
0.72255835 -0.69085036 0.02520332 1177.87359424
0.69069836 0.72297238 0.01570689 625.85412836
-0.02907242 0.00605875 0.99955895 463.31640834
Axis -0.00697802 0.03925492 0.99920486
Axis point -166.31523038 1776.59443436 0.00000000
Rotation angle (degrees) 43.73501117
Shift along axis 479.29663484
> fitmap #8 inMap #2
Fit map ref_NR_5.em scaled in map box /M mark 1 M using 17265 points
correlation = 0.8609, correlation about mean = 0.1947, overlap = 161.1
steps = 56, shift = 0.292, angle = 0.0349 degrees
Position of ref_NR_5.em scaled (#8) relative to box /M mark 1 M (#2)
coordinates:
Matrix rotation and translation
0.71340445 -0.70070368 0.00827327 1184.70607853
0.70075175 0.71337141 -0.00694387 632.48717256
-0.00103631 0.01075130 0.99994167 220.58271818
Axis 0.01262500 0.00664212 0.99989824
Axis point -180.34437777 1760.18133197 0.00000000
Rotation angle (degrees) 44.49114529
Shift along axis 239.71823609
> volume resample #6 onGrid #2
Opened ref_CR_5.em scaled resampled as #3, grid size 55,55,55, pixel 13.3,
shown at step 1, values float32
> volume resample #7 onGrid #2
Opened ref_IR_5.em scaled resampled as #4, grid size 55,55,55, pixel 13.3,
shown at step 1, values float32
> volume resample #8 onGrid #2
Opened ref_NR_5.em scaled resampled as #9, grid size 55,55,55, pixel 13.3,
shown at step 1, values float32
> surface dust #2 size 133
> surface dust #3 size 133
> surface dust #4 size 133
> surface dust #9 size 133
> volume #4 level 0.06015
> volume #3 level 0.05808
> volume #9 level 0.06062
> show #!6 models
> hide #!2 models
> color #6 #ffffb264 models
> color #6 #00ffff64 models
> color #6 cyan models
> color #3 #cccc9964 models
> hide #!9 models
> hide #!4 models
> hide #1 models
> hide #!3 models
> show #!3 models
> color #6 cyan models
> color #6 #00ffff64 models
> hide #!3 models
> color #6 cyan models
> transparency #6.1 0
> show #!3 models
> show #!2 models
> hide #!3 models
> hide #!2 models
> show #!2 models
> hide #!6 models
> show #!3 models
> color #3 #cccc9902 models
> color #3 #cccc99ff models
> show #!9 models
> show #!4 models
> save
> C:/Users/dziemianowicz/Desktop/2023-11_15_mock_densityPrepModelling_bin4-on-
> bin2.cxs includeMaps true
> hide #!2 models
> show #!6 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!6 models
> show #!6 models
> color #3 #cccc9964 models
> show #!2 models
> close #3-4,9
> volume resample #2 onGrid #6
Opened box /M mark 1 M resampled as #3, grid size 120,120,120, pixel 6.67,
shown at step 1, values float32
> hide #!6 models
> show #!2 models
> volume #!2-3 showOutlineBox true
> volume resample #2 onGrid #7
Opened box /M mark 1 M resampled as #4, grid size 120,120,120, pixel 6.67,
shown at step 1, values float32
> hide #!3 models
> show #!2 models
> show #!3 models
> hide #!3 models
> close #3
> volume resample #6 onGrid #4
Opened ref_CR_5.em scaled resampled as #3, grid size 120,120,120, pixel 6.67,
shown at step 1, values float32
> volume resample #7 onGrid #4
Opened ref_IR_5.em scaled resampled as #9, grid size 120,120,120, pixel 6.67,
shown at step 1, values float32
> volume resample #8 onGrid #4
Opened ref_NR_5.em scaled resampled as #10, grid size 120,120,120, pixel 6.67,
shown at step 1, values float32
> hide #!4 models
> surface dust #2 size 133
> surface dust #3 size 66.7
> surface dust #9 size 66.7
> surface dust #10 size 66.7
> hide #!2 models
> show #!4 models
> hide #!4 models
> volume #!3,9-10 showOutlineBox true
> hide #!3 models
> show #!3 models
> hide #!9 models
> show #!9 models
> hide #!10 models
> show #!10 models
> hide #!10 models
> hide #!9 models
> hide #!3 models
> show #!9 models
> hide #!9 models
> show #!10 models
> hide #!10 models
> show #!10 models
> show #!9 models
> show #!3 models
> show #!2 models
> hide #!2 models
> show #!5 models
> volume copy #9
Opened ref_IR_5.em scaled resampled copy as #11, grid size 120,120,120, pixel
6.67, shown at step 1, values float32
> surface dust #5 size 133
> surface dust #3 size 66.7
> surface dust #10 size 66.7
> surface dust #11 size 66.7
> hide #!10 models
> select add #11
1 atom, 1 residue, 3 models selected
> ui mousemode right "translate selected models"
> view matrix models
> #1,1,0,0,-5.0468,0,1,0,-463.11,0,0,1,27.319,#11,0.72256,-0.69085,0.025203,1362.4,0.6907,0.72297,0.015707,360.48,-0.029072,0.0060587,0.99956,464.62
> show #!9 models
> view matrix models
> #1,1,0,0,4.9566,0,1,0,-538.55,0,0,1,31.836,#11,0.72256,-0.69085,0.025203,1372.4,0.6907,0.72297,0.015707,285.04,-0.029072,0.0060587,0.99956,469.14
> ui mousemode right "rotate selected models"
> view matrix models
> #1,0.78798,0.61561,0.010553,-565.36,-0.61557,0.78805,-0.0070154,617.75,-0.012635,-0.00096835,0.99992,50.814,#11,0.99426,-0.099246,0.040078,1023.8,0.099726,0.99496,-0.010149,421.93,-0.038869,0.014087,0.99915,470
> hide #!3 models
> fitmap #11 inMap #5
Fit map ref_IR_5.em scaled resampled copy in map ref_3_symmetrized.em scaled
using 17277 points
correlation = 0.8742, correlation about mean = 0.1471, overlap = 161.9
steps = 72, shift = 59.7, angle = 7.15 degrees
Position of ref_IR_5.em scaled resampled copy (#11) relative to
ref_3_symmetrized.em scaled (#5) coordinates:
Matrix rotation and translation
0.99927504 0.02456670 0.02908378 920.62082425
-0.02438879 0.99968170 -0.00645611 463.83694210
-0.02923313 0.00574211 0.99955613 463.42997964
Axis 0.15818792 0.75626007 -0.63486005
Axis point 20700.19015266 0.00000000 -30038.33895686
Rotation angle (degrees) 2.20965102
Shift along axis 202.19926822
> fitmap #9 inMap #5
Fit map ref_IR_5.em scaled resampled in map ref_3_symmetrized.em scaled using
17277 points
correlation = 0.874, correlation about mean = 0.1432, overlap = 161.7
steps = 40, shift = 0.184, angle = 0.0738 degrees
Position of ref_IR_5.em scaled resampled (#9) relative to ref_3_symmetrized.em
scaled (#5) coordinates:
Matrix rotation and translation
0.72331078 -0.69006581 0.02511340 1177.35346030
0.68989359 0.72372581 0.01636423 625.52685270
-0.02946761 0.00548915 0.99955066 463.83291026
Axis -0.00787433 0.03952049 0.99918773
Axis point -167.01811187 1778.57910429 0.00000000
Rotation angle (degrees) 43.67291786
Shift along axis 478.90641520
> fitmap #11 inMap #5
Fit map ref_IR_5.em scaled resampled copy in map ref_3_symmetrized.em scaled
using 17277 points
correlation = 0.8742, correlation about mean = 0.1471, overlap = 161.9
steps = 44, shift = 0.0114, angle = 0.00507 degrees
Position of ref_IR_5.em scaled resampled copy (#11) relative to
ref_3_symmetrized.em scaled (#5) coordinates:
Matrix rotation and translation
0.99927746 0.02457290 0.02899555 920.65299941
-0.02439546 0.99968153 -0.00645743 463.83887527
-0.02914499 0.00574540 0.99955868 463.38260363
Axis 0.15850328 0.75519095 -0.63605293
Axis point 20752.49357784 0.00000000 -30133.02386553
Rotation angle (degrees) 2.20608489
Shift along axis 201.47757597
> measure rotation #9 toModel #11
Position of ref_IR_5.em scaled resampled #9 relative to ref_IR_5.em scaled
resampled copy #11 coordinates:
Matrix rotation and translation
0.70681672 -0.70738282 -0.00443586 252.55740604
0.70727842 0.70656994 0.02271895 167.94694563
-0.01293675 -0.01919552 0.99973205 6.84918994
Axis -0.02961510 0.00600640 0.99954333
Axis point -76.21786423 388.63585329 0.00000000
Rotation angle (degrees) 45.04433985
Shift along axis 0.37530600
> measure rotation #11 toModel #9
Position of ref_IR_5.em scaled resampled copy #11 relative to ref_IR_5.em
scaled resampled #9 coordinates:
Matrix rotation and translation
0.70681672 0.70727842 -0.01293675 -297.20844177
-0.70738282 0.70656994 -0.01919552 60.11997903
-0.00443586 0.02271895 0.99973205 -9.54262507
Axis 0.02961510 -0.00600640 -0.99954333
Axis point -76.21786432 388.63585377 0.00000000
Rotation angle (degrees) 45.04433982
Shift along axis 0.37530600
> hide #!11 models
> show #!10 models
> select add #11
1 atom, 1 residue, 3 models selected
> show #!8 models
> hide #!8 models
> show #!11 models
> hide #!11 models
> show #!3 models
> save
> C:/Users/dziemianowicz/Desktop/2023-11_15_mock_densityPrepModelling_bin4-on-
> bin2.cxs includeMaps true
> save C:/Users/dziemianowicz/Desktop/ref_mock_CR_cut_resampled.mrc models #3
> save C:/Users/dziemianowicz/Desktop/ref_mock_IR_cut_resampled.mrc models #9
> save C:/Users/dziemianowicz/Desktop/ref_mock_NR_cut_resampled.mrc models #10
> save C:/Users/dziemianowicz/Desktop/full.mrc models #5
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> show #!2 models
> hide #!2 models
> volume #!3,5,9-10 showOutlineBox false
> volume #!3,5,9-10 showOutlineBox true
> close #12-13
> hide #!5 models
> show #!5 models
> hide #!3 models
> show #!3 models
> show #!6 models
> hide #!6 models
> show #!11 models
> hide #!11 models
> show #!4 models
> hide #!4 models
> volume resample #4 onGrid #6
Opened box /M mark 1 M resampled resampled as #12, grid size 120,120,120,
pixel 6.67, shown at step 1, values float32
> close #12
> volume resample #4 onGrid #7
Opened box /M mark 1 M resampled resampled as #12, grid size 120,120,120,
pixel 6.67, shown at step 1, values float32
> hide #!12 models
> show #!11 models
> show #!2 models
> show #!12 models
> hide #!11 models
> hide #!12 models
> hide #!10 models
> hide #!9 models
> hide #!5 models
> hide #!3 models
> show #!5 models
> hide #!2 models
> show #1 models
> show #!2 models
> hide #!2 models
> show #!12 models
> close #12
> show #!11 models
> close #9-11
> show #!3 models
> close #3
> show #!4 models
> show #!2 models
> hide #!4 models
> show #!6 models
> show #!7 models
> show #!8 models
> hide #!5 models
> show #!5 models
> hide #!2 models
> show #!2 models
> volume resample #6 onGrid #2
Opened ref_CR_5.em scaled resampled as #3, grid size 55,55,55, pixel 13.3,
shown at step 1, values float32
> volume resample #7 onGrid #2
Opened ref_IR_5.em scaled resampled as #9, grid size 55,55,55, pixel 13.3,
shown at step 1, values float32
> volume resample #8 onGrid #2
Opened ref_NR_5.em scaled resampled as #10, grid size 55,55,55, pixel 13.3,
shown at step 1, values float32
> save C:/Users/dziemianowicz/Desktop/ref_mock_CR_cut_resampled.mrc models #3
> save C:/Users/dziemianowicz/Desktop/ref_mock_IR_cut_resampled.mrc models #9
> save C:/Users/dziemianowicz/Desktop/ref_mock_NR_cut_resampled.mrc models #10
> save C:/Users/dziemianowicz/Desktop/full.mrc models #5
> select add #9
1 atom, 1 residue, 3 models selected
> select subtract #1
2 models selected
> hide #1 models
> ui mousemode right "translate selected models"
> view matrix models #9,1,0,0,9.1858,0,1,0,-14.378,0,0,1,7.8333
> undo
> volume copy #9
Opened ref_mock_IR_cut_resampled.mrc copy as #11, grid size 55,55,55, pixel
13.3, shown at step 1, values float32
> show #!9 models
> select subtract #9
Nothing selected
> select add #11
2 models selected
> view matrix models #11,1,0,0,186.34,0,1,0,-308.94,0,0,1,21.876
> ui mousemode right "rotate selected models"
> view matrix models
> #11,0.79283,0.60876,0.028774,-291.09,-0.60886,0.79326,-0.0062291,665.95,-0.026617,-0.012581,0.99957,68.716
> ui mousemode right "translate selected models"
> view matrix models
> #11,0.79283,0.60876,0.028774,-280.51,-0.60886,0.79326,-0.0062291,621.21,-0.026617,-0.012581,0.99957,47.688
> fitmap #11 inMap #5
Fit map ref_mock_IR_cut_resampled.mrc copy in map full.mrc using 1367 points
correlation = 0.9062, correlation about mean = 0.08163, overlap = 14.53
steps = 80, shift = 89.4, angle = 8.14 degrees
Position of ref_mock_IR_cut_resampled.mrc copy (#11) relative to full.mrc (#5)
coordinates:
Matrix rotation and translation
0.70202181 0.71213715 -0.00510383 -348.92537502
-0.71214218 0.70203445 0.00107066 864.25061014
0.00434552 0.00288302 0.99998640 -8.15999927
Axis 0.00127245 -0.00663433 -0.99997718
Axis point 858.33187919 849.12305390 0.00000000
Rotation angle (degrees) 45.41059854
Shift along axis 1.98210265
> fitmap #11 inMap #5
Fit map ref_mock_IR_cut_resampled.mrc copy in map full.mrc using 1367 points
correlation = 0.9064, correlation about mean = 0.08152, overlap = 14.51
steps = 28, shift = 0.235, angle = 0.0212 degrees
Position of ref_mock_IR_cut_resampled.mrc copy (#11) relative to full.mrc (#5)
coordinates:
Matrix rotation and translation
0.70200112 0.71215803 -0.00503626 -349.00655738
-0.71216127 0.70201444 0.00143275 864.00716159
0.00455587 0.00258084 0.99998629 -7.83306658
Axis 0.00080604 -0.00673439 -0.99997700
Axis point 857.95928061 849.07960204 0.00000000
Rotation angle (degrees) 45.41224031
Shift along axis 1.73301452
> measure rotation #9 toModel #11
Position of ref_mock_IR_cut_resampled.mrc #9 relative to
ref_mock_IR_cut_resampled.mrc copy #11 coordinates:
Matrix rotation and translation
0.70200112 -0.71216127 0.00455587 860.35111745
0.71215803 0.70201444 0.00258084 -357.97746307
-0.00503626 0.00143275 0.99998629 4.83736516
Axis -0.00080604 0.00673439 0.99997700
Axis point 857.95928080 849.07960222 0.00000000
Rotation angle (degrees) 45.41224030
Shift along axis 1.73301452
> save
> C:/Users/dziemianowicz/Desktop/2023-11_15_mock_densityPrepModelling_bin4-on-
> bin2.cxs includeMaps true
——— End of log from Fri Nov 17 14:58:14 2023 ———
opened ChimeraX session
> save
> E:/ownCloud/Manuscripts/FluNPC/Modelling/mock/2023-11_15_mock_densityPrepModelling_bin4-on-
> bin2_structureFitting.cxs includeMaps true
——— End of log from Mon Sep 23 14:46:37 2024 ———
opened ChimeraX session
> lighting simple
> hide #12 models
> hide #!2 models
> hide #!3 models
> show #!3 models
> hide #!5 models
> set bgColor white
> lighting simple
> surface dust #3 size 133
> surface dust #9 size 133
> surface dust #10 size 133
> surface dust #11 size 133
> volume #11 level 0.06428
> hide #!11 models
> volume #9 level 0.06676
> open
> E:/ownCloud/Manuscripts/FluNPC/Figures/npc_fitting/hNup155_CRconnector_CTD.pdb
Chain information for hNup155_CRconnector_CTD.pdb #13
---
Chain | Description
D | No description available
> open
> E:/ownCloud/Manuscripts/FluNPC/Figures/npc_fitting/hNup155_CRconnector_NTD.pdb
Chain information for hNup155_CRconnector_NTD.pdb #14
---
Chain | Description
D | No description available
> open
> E:/ownCloud/Manuscripts/FluNPC/Figures/npc_fitting/hNup358_1_CRinner.pdb
Chain information for hNup358_1_CRinner.pdb #15
---
Chain | Description
0 | No description available
> open
> E:/ownCloud/Manuscripts/FluNPC/Figures/npc_fitting/hNup358_1_CRouter.pdb
Chain information for hNup358_1_CRouter.pdb #16
---
Chain | Description
0 | No description available
> open
> E:/ownCloud/Manuscripts/FluNPC/Figures/npc_fitting/hNup358_2_CRinner.pdb
Chain information for hNup358_2_CRinner.pdb #17
---
Chain | Description
0 | No description available
> open
> E:/ownCloud/Manuscripts/FluNPC/Figures/npc_fitting/hNup358_2_CRouter.pdb
Chain information for hNup358_2_CRouter.pdb #18
---
Chain | Description
0 | No description available
> open E:/ownCloud/Manuscripts/FluNPC/Figures/npc_fitting/hNup358_CRmiddle.pdb
Chain information for hNup358_CRmiddle.pdb #19
---
Chain | Description
0 | No description available
> open
> E:/ownCloud/Manuscripts/FluNPC/Figures/npc_fitting/Nup98_CRconnector.pdb
Chain information for Nup98_CRconnector.pdb #20
---
Chain | Description
U | No description available
> open
> E:/ownCloud/Manuscripts/FluNPC/Figures/npc_fitting/Nup133_propeller_CRinner.pdb
Chain information for Nup133_propeller_CRinner.pdb #21
---
Chain | Description
K | No description available
R | No description available
S | No description available
> open
> E:/ownCloud/Manuscripts/FluNPC/Figures/npc_fitting/Nup133_propeller_CRouter.pdb
Chain information for Nup133_propeller_CRouter.pdb #22
---
Chain | Description
K | No description available
R | No description available
S | No description available
> open E:/ownCloud/Manuscripts/FluNPC/Figures/npc_fitting/Y_CRinner.pdb
Chain information for Y_CRinner.pdb #23
---
Chain | Description
A | No description available
C | No description available
K | No description available
L | No description available
M | No description available
N | No description available
O | No description available
P | No description available
Q | No description available
R | No description available
S | No description available
> open E:/ownCloud/Manuscripts/FluNPC/Figures/npc_fitting/Y_CRouter.pdb
Chain information for Y_CRouter.pdb #24
---
Chain | Description
A | No description available
C | No description available
J | No description available
K | No description available
L | No description available
M | No description available
N | No description available
O | No description available
P | No description available
Q | No description available
R | No description available
S | No description available
U | No description available
V | No description available
W | No description available
> volume #!3,9-10 showOutlineBox true
> ui tool show "Side View"
> volume #!3,9-10 showOutlineBox false
Drag select of 10914 residues, 148340 atoms, 4 pseudobonds
> ui mousemode right translate
[Repeated 1 time(s)]
> ui mousemode right "translate selected models"
> view matrix models
> #13,1,0,0,812.53,0,1,0,94.109,0,0,1,3.3408,#14,1,0,0,812.53,0,1,0,94.109,0,0,1,3.3408,#15,1,0,0,812.53,0,1,0,94.109,0,0,1,3.3408,#16,1,0,0,812.53,0,1,0,94.109,0,0,1,3.3408,#17,1,0,0,812.53,0,1,0,94.109,0,0,1,3.3408,#18,1,0,0,812.53,0,1,0,94.109,0,0,1,3.3408,#19,1,0,0,812.53,0,1,0,94.109,0,0,1,3.3408,#20,1,0,0,812.53,0,1,0,94.109,0,0,1,3.3408,#21,1,0,0,812.53,0,1,0,94.109,0,0,1,3.3408,#22,1,0,0,812.53,0,1,0,94.109,0,0,1,3.3408,#23,1,0,0,812.53,0,1,0,94.109,0,0,1,3.3408,#24,1,0,0,812.53,0,1,0,94.109,0,0,1,3.3408
> ui mousemode right "rotate selected models"
> view matrix models
> #13,-0.76484,0.62396,0.16027,755.72,-0.63369,-0.77348,-0.012794,1876.2,0.11598,-0.11135,0.98699,73.822,#14,-0.76484,0.62396,0.16027,755.72,-0.63369,-0.77348,-0.012794,1876.2,0.11598,-0.11135,0.98699,73.822,#15,-0.76484,0.62396,0.16027,755.72,-0.63369,-0.77348,-0.012794,1876.2,0.11598,-0.11135,0.98699,73.822,#16,-0.76484,0.62396,0.16027,755.72,-0.63369,-0.77348,-0.012794,1876.2,0.11598,-0.11135,0.98699,73.822,#17,-0.76484,0.62396,0.16027,755.72,-0.63369,-0.77348,-0.012794,1876.2,0.11598,-0.11135,0.98699,73.822,#18,-0.76484,0.62396,0.16027,755.72,-0.63369,-0.77348,-0.012794,1876.2,0.11598,-0.11135,0.98699,73.822,#19,-0.76484,0.62396,0.16027,755.72,-0.63369,-0.77348,-0.012794,1876.2,0.11598,-0.11135,0.98699,73.822,#20,-0.76484,0.62396,0.16027,755.72,-0.63369,-0.77348,-0.012794,1876.2,0.11598,-0.11135,0.98699,73.822,#21,-0.76484,0.62396,0.16027,755.72,-0.63369,-0.77348,-0.012794,1876.2,0.11598,-0.11135,0.98699,73.822,#22,-0.76484,0.62396,0.16027,755.72,-0.63369,-0.77348,-0.012794,1876.2,0.11598,-0.11135,0.98699,73.822,#23,-0.76484,0.62396,0.16027,755.72,-0.63369,-0.77348,-0.012794,1876.2,0.11598,-0.11135,0.98699,73.822,#24,-0.76484,0.62396,0.16027,755.72,-0.63369,-0.77348,-0.012794,1876.2,0.11598,-0.11135,0.98699,73.822
> ui mousemode right "translate selected models"
> view matrix models
> #13,-0.76484,0.62396,0.16027,785.69,-0.63369,-0.77348,-0.012794,2044.1,0.11598,-0.11135,0.98699,68.318,#14,-0.76484,0.62396,0.16027,785.69,-0.63369,-0.77348,-0.012794,2044.1,0.11598,-0.11135,0.98699,68.318,#15,-0.76484,0.62396,0.16027,785.69,-0.63369,-0.77348,-0.012794,2044.1,0.11598,-0.11135,0.98699,68.318,#16,-0.76484,0.62396,0.16027,785.69,-0.63369,-0.77348,-0.012794,2044.1,0.11598,-0.11135,0.98699,68.318,#17,-0.76484,0.62396,0.16027,785.69,-0.63369,-0.77348,-0.012794,2044.1,0.11598,-0.11135,0.98699,68.318,#18,-0.76484,0.62396,0.16027,785.69,-0.63369,-0.77348,-0.012794,2044.1,0.11598,-0.11135,0.98699,68.318,#19,-0.76484,0.62396,0.16027,785.69,-0.63369,-0.77348,-0.012794,2044.1,0.11598,-0.11135,0.98699,68.318,#20,-0.76484,0.62396,0.16027,785.69,-0.63369,-0.77348,-0.012794,2044.1,0.11598,-0.11135,0.98699,68.318,#21,-0.76484,0.62396,0.16027,785.69,-0.63369,-0.77348,-0.012794,2044.1,0.11598,-0.11135,0.98699,68.318,#22,-0.76484,0.62396,0.16027,785.69,-0.63369,-0.77348,-0.012794,2044.1,0.11598,-0.11135,0.98699,68.318,#23,-0.76484,0.62396,0.16027,785.69,-0.63369,-0.77348,-0.012794,2044.1,0.11598,-0.11135,0.98699,68.318,#24,-0.76484,0.62396,0.16027,785.69,-0.63369,-0.77348,-0.012794,2044.1,0.11598,-0.11135,0.98699,68.318
> view matrix models
> #13,-0.76484,0.62396,0.16027,737.61,-0.63369,-0.77348,-0.012794,2106.1,0.11598,-0.11135,0.98699,58.249,#14,-0.76484,0.62396,0.16027,737.61,-0.63369,-0.77348,-0.012794,2106.1,0.11598,-0.11135,0.98699,58.249,#15,-0.76484,0.62396,0.16027,737.61,-0.63369,-0.77348,-0.012794,2106.1,0.11598,-0.11135,0.98699,58.249,#16,-0.76484,0.62396,0.16027,737.61,-0.63369,-0.77348,-0.012794,2106.1,0.11598,-0.11135,0.98699,58.249,#17,-0.76484,0.62396,0.16027,737.61,-0.63369,-0.77348,-0.012794,2106.1,0.11598,-0.11135,0.98699,58.249,#18,-0.76484,0.62396,0.16027,737.61,-0.63369,-0.77348,-0.012794,2106.1,0.11598,-0.11135,0.98699,58.249,#19,-0.76484,0.62396,0.16027,737.61,-0.63369,-0.77348,-0.012794,2106.1,0.11598,-0.11135,0.98699,58.249,#20,-0.76484,0.62396,0.16027,737.61,-0.63369,-0.77348,-0.012794,2106.1,0.11598,-0.11135,0.98699,58.249,#21,-0.76484,0.62396,0.16027,737.61,-0.63369,-0.77348,-0.012794,2106.1,0.11598,-0.11135,0.98699,58.249,#22,-0.76484,0.62396,0.16027,737.61,-0.63369,-0.77348,-0.012794,2106.1,0.11598,-0.11135,0.98699,58.249,#23,-0.76484,0.62396,0.16027,737.61,-0.63369,-0.77348,-0.012794,2106.1,0.11598,-0.11135,0.98699,58.249,#24,-0.76484,0.62396,0.16027,737.61,-0.63369,-0.77348,-0.012794,2106.1,0.11598,-0.11135,0.98699,58.249
> ui mousemode right "rotate selected models"
> view matrix models
> #13,-0.78998,0.61093,0.052002,871.52,-0.613,-0.78515,-0.088211,2187.9,-0.013061,-0.10156,0.99474,87.44,#14,-0.78998,0.61093,0.052002,871.52,-0.613,-0.78515,-0.088211,2187.9,-0.013061,-0.10156,0.99474,87.44,#15,-0.78998,0.61093,0.052002,871.52,-0.613,-0.78515,-0.088211,2187.9,-0.013061,-0.10156,0.99474,87.44,#16,-0.78998,0.61093,0.052002,871.52,-0.613,-0.78515,-0.088211,2187.9,-0.013061,-0.10156,0.99474,87.44,#17,-0.78998,0.61093,0.052002,871.52,-0.613,-0.78515,-0.088211,2187.9,-0.013061,-0.10156,0.99474,87.44,#18,-0.78998,0.61093,0.052002,871.52,-0.613,-0.78515,-0.088211,2187.9,-0.013061,-0.10156,0.99474,87.44,#19,-0.78998,0.61093,0.052002,871.52,-0.613,-0.78515,-0.088211,2187.9,-0.013061,-0.10156,0.99474,87.44,#20,-0.78998,0.61093,0.052002,871.52,-0.613,-0.78515,-0.088211,2187.9,-0.013061,-0.10156,0.99474,87.44,#21,-0.78998,0.61093,0.052002,871.52,-0.613,-0.78515,-0.088211,2187.9,-0.013061,-0.10156,0.99474,87.44,#22,-0.78998,0.61093,0.052002,871.52,-0.613,-0.78515,-0.088211,2187.9,-0.013061,-0.10156,0.99474,87.44,#23,-0.78998,0.61093,0.052002,871.52,-0.613,-0.78515,-0.088211,2187.9,-0.013061,-0.10156,0.99474,87.44,#24,-0.78998,0.61093,0.052002,871.52,-0.613,-0.78515,-0.088211,2187.9,-0.013061,-0.10156,0.99474,87.44
> ui mousemode right "translate selected models"
> view matrix models
> #13,-0.78998,0.61093,0.052002,897.81,-0.613,-0.78515,-0.088211,2196.7,-0.013061,-0.10156,0.99474,107.25,#14,-0.78998,0.61093,0.052002,897.81,-0.613,-0.78515,-0.088211,2196.7,-0.013061,-0.10156,0.99474,107.25,#15,-0.78998,0.61093,0.052002,897.81,-0.613,-0.78515,-0.088211,2196.7,-0.013061,-0.10156,0.99474,107.25,#16,-0.78998,0.61093,0.052002,897.81,-0.613,-0.78515,-0.088211,2196.7,-0.013061,-0.10156,0.99474,107.25,#17,-0.78998,0.61093,0.052002,897.81,-0.613,-0.78515,-0.088211,2196.7,-0.013061,-0.10156,0.99474,107.25,#18,-0.78998,0.61093,0.052002,897.81,-0.613,-0.78515,-0.088211,2196.7,-0.013061,-0.10156,0.99474,107.25,#19,-0.78998,0.61093,0.052002,897.81,-0.613,-0.78515,-0.088211,2196.7,-0.013061,-0.10156,0.99474,107.25,#20,-0.78998,0.61093,0.052002,897.81,-0.613,-0.78515,-0.088211,2196.7,-0.013061,-0.10156,0.99474,107.25,#21,-0.78998,0.61093,0.052002,897.81,-0.613,-0.78515,-0.088211,2196.7,-0.013061,-0.10156,0.99474,107.25,#22,-0.78998,0.61093,0.052002,897.81,-0.613,-0.78515,-0.088211,2196.7,-0.013061,-0.10156,0.99474,107.25,#23,-0.78998,0.61093,0.052002,897.81,-0.613,-0.78515,-0.088211,2196.7,-0.013061,-0.10156,0.99474,107.25,#24,-0.78998,0.61093,0.052002,897.81,-0.613,-0.78515,-0.088211,2196.7,-0.013061,-0.10156,0.99474,107.25
> ui mousemode right "rotate selected models"
> view matrix models
> #13,-0.72424,0.6889,0.029902,828.52,-0.68886,-0.7209,-0.076004,2154.6,-0.030803,-0.075644,0.99666,88.78,#14,-0.72424,0.6889,0.029902,828.52,-0.68886,-0.7209,-0.076004,2154.6,-0.030803,-0.075644,0.99666,88.78,#15,-0.72424,0.6889,0.029902,828.52,-0.68886,-0.7209,-0.076004,2154.6,-0.030803,-0.075644,0.99666,88.78,#16,-0.72424,0.6889,0.029902,828.52,-0.68886,-0.7209,-0.076004,2154.6,-0.030803,-0.075644,0.99666,88.78,#17,-0.72424,0.6889,0.029902,828.52,-0.68886,-0.7209,-0.076004,2154.6,-0.030803,-0.075644,0.99666,88.78,#18,-0.72424,0.6889,0.029902,828.52,-0.68886,-0.7209,-0.076004,2154.6,-0.030803,-0.075644,0.99666,88.78,#19,-0.72424,0.6889,0.029902,828.52,-0.68886,-0.7209,-0.076004,2154.6,-0.030803,-0.075644,0.99666,88.78,#20,-0.72424,0.6889,0.029902,828.52,-0.68886,-0.7209,-0.076004,2154.6,-0.030803,-0.075644,0.99666,88.78,#21,-0.72424,0.6889,0.029902,828.52,-0.68886,-0.7209,-0.076004,2154.6,-0.030803,-0.075644,0.99666,88.78,#22,-0.72424,0.6889,0.029902,828.52,-0.68886,-0.7209,-0.076004,2154.6,-0.030803,-0.075644,0.99666,88.78,#23,-0.72424,0.6889,0.029902,828.52,-0.68886,-0.7209,-0.076004,2154.6,-0.030803,-0.075644,0.99666,88.78,#24,-0.72424,0.6889,0.029902,828.52,-0.68886,-0.7209,-0.076004,2154.6,-0.030803,-0.075644,0.99666,88.78
> save
> C:/Users/dziemianowicz/Desktop/11-11-24_CRfit_(2023-11_15_mock_densityPrepModelling_bin4-on-
> bin2_structureFitting).cxs includeMaps true
> ui tool show "Fit in Map"
> molmap sel 20
Opened map 20 as #25, grid size 77,120,72, pixel 6.67, shown at level 0.0439,
step 1, values float32
> color #25 #62b29aff models
> color #25 #b2a860ff models
> fitmap #25 inMap #3
Fit map map 20 in map ref_mock_CR_cut_resampled.mrc using 25762 points
correlation = 0.7559, correlation about mean = 0.401, overlap = 364.6
steps = 68, shift = 16.6, angle = 5.25 degrees
Position of map 20 (#25) relative to ref_mock_CR_cut_resampled.mrc (#3)
coordinates:
Matrix rotation and translation
-0.70319838 0.71082832 -0.01533465 863.66993448
-0.71088621 -0.70330354 -0.00221997 2061.83850275
-0.01236293 0.00934012 0.99987995 -5.00424343
Axis 0.00813080 -0.00209017 -0.99996476
Axis point 862.09061621 850.70351116 0.00000000
Rotation angle (degrees) 134.69325165
Shift along axis 7.71681113
> fitmap sel inMap #25
Fit molecules hNup155_CRconnector_CTD.pdb (#13), hNup155_CRconnector_NTD.pdb
(#14), hNup358_1_CRinner.pdb (#15), hNup358_1_CRouter.pdb (#16),
hNup358_2_CRinner.pdb (#17), hNup358_2_CRouter.pdb (#18), hNup358_CRmiddle.pdb
(#19), Nup98_CRconnector.pdb (#20), Nup133_propeller_CRinner.pdb (#21),
Nup133_propeller_CRouter.pdb (#22), Y_CRinner.pdb (#23), Y_CRouter.pdb (#24)
to map map 20 (#25) using 234892 atoms
average map value = 0.2728, steps = 68
shifted from previous position = 16.5
rotated from previous position = 5.26 degrees
atoms outside contour = 92, contour level = 0.043903
Position of hNup155_CRconnector_CTD.pdb (#13) relative to map 20 (#25)
coordinates:
Matrix rotation and translation
1.00000000 -0.00002411 -0.00000905 0.06603721
0.00002411 0.99999999 -0.00014999 0.15422880
0.00000906 0.00014999 0.99999999 -0.17855768
Axis 0.98557257 -0.05949059 0.15845370
Axis point 0.00000000 1219.74219065 1039.14042838
Rotation angle (degrees) 0.00871942
Shift along axis 0.02761617
Position of hNup155_CRconnector_NTD.pdb (#14) relative to map 20 (#25)
coordinates:
Matrix rotation and translation
1.00000000 -0.00002411 -0.00000905 0.06603721
0.00002411 0.99999999 -0.00014999 0.15422880
0.00000906 0.00014999 0.99999999 -0.17855768
Axis 0.98557257 -0.05949059 0.15845370
Axis point 0.00000000 1219.74219065 1039.14042838
Rotation angle (degrees) 0.00871942
Shift along axis 0.02761617
Position of hNup358_1_CRinner.pdb (#15) relative to map 20 (#25) coordinates:
Matrix rotation and translation
1.00000000 -0.00002411 -0.00000905 0.06603721
0.00002411 0.99999999 -0.00014999 0.15422880
0.00000906 0.00014999 0.99999999 -0.17855768
Axis 0.98557257 -0.05949059 0.15845370
Axis point 0.00000000 1219.74219065 1039.14042838
Rotation angle (degrees) 0.00871942
Shift along axis 0.02761617
Position of hNup358_1_CRouter.pdb (#16) relative to map 20 (#25) coordinates:
Matrix rotation and translation
1.00000000 -0.00002411 -0.00000905 0.06603721
0.00002411 0.99999999 -0.00014999 0.15422880
0.00000906 0.00014999 0.99999999 -0.17855768
Axis 0.98557257 -0.05949059 0.15845370
Axis point 0.00000000 1219.74219065 1039.14042838
Rotation angle (degrees) 0.00871942
Shift along axis 0.02761617
Position of hNup358_2_CRinner.pdb (#17) relative to map 20 (#25) coordinates:
Matrix rotation and translation
1.00000000 -0.00002411 -0.00000905 0.06603721
0.00002411 0.99999999 -0.00014999 0.15422880
0.00000906 0.00014999 0.99999999 -0.17855768
Axis 0.98557257 -0.05949059 0.15845370
Axis point 0.00000000 1219.74219065 1039.14042838
Rotation angle (degrees) 0.00871942
Shift along axis 0.02761617
Position of hNup358_2_CRouter.pdb (#18) relative to map 20 (#25) coordinates:
Matrix rotation and translation
1.00000000 -0.00002411 -0.00000905 0.06603721
0.00002411 0.99999999 -0.00014999 0.15422880
0.00000906 0.00014999 0.99999999 -0.17855768
Axis 0.98557257 -0.05949059 0.15845370
Axis point 0.00000000 1219.74219065 1039.14042838
Rotation angle (degrees) 0.00871942
Shift along axis 0.02761617
Position of hNup358_CRmiddle.pdb (#19) relative to map 20 (#25) coordinates:
Matrix rotation and translation
1.00000000 -0.00002411 -0.00000905 0.06603721
0.00002411 0.99999999 -0.00014999 0.15422880
0.00000906 0.00014999 0.99999999 -0.17855768
Axis 0.98557257 -0.05949059 0.15845370
Axis point 0.00000000 1219.74219065 1039.14042838
Rotation angle (degrees) 0.00871942
Shift along axis 0.02761617
Position of Nup98_CRconnector.pdb (#20) relative to map 20 (#25) coordinates:
Matrix rotation and translation
1.00000000 -0.00002411 -0.00000905 0.06603721
0.00002411 0.99999999 -0.00014999 0.15422880
0.00000906 0.00014999 0.99999999 -0.17855768
Axis 0.98557257 -0.05949059 0.15845370
Axis point 0.00000000 1219.74219065 1039.14042838
Rotation angle (degrees) 0.00871942
Shift along axis 0.02761617
Position of Nup133_propeller_CRinner.pdb (#21) relative to map 20 (#25)
coordinates:
Matrix rotation and translation
1.00000000 -0.00002411 -0.00000905 0.06603721
0.00002411 0.99999999 -0.00014999 0.15422880
0.00000906 0.00014999 0.99999999 -0.17855768
Axis 0.98557257 -0.05949059 0.15845370
Axis point 0.00000000 1219.74219065 1039.14042838
Rotation angle (degrees) 0.00871942
Shift along axis 0.02761617
Position of Nup133_propeller_CRouter.pdb (#22) relative to map 20 (#25)
coordinates:
Matrix rotation and translation
1.00000000 -0.00002411 -0.00000905 0.06603721
0.00002411 0.99999999 -0.00014999 0.15422880
0.00000906 0.00014999 0.99999999 -0.17855768
Axis 0.98557257 -0.05949059 0.15845370
Axis point 0.00000000 1219.74219065 1039.14042838
Rotation angle (degrees) 0.00871942
Shift along axis 0.02761617
Position of Y_CRinner.pdb (#23) relative to map 20 (#25) coordinates:
Matrix rotation and translation
1.00000000 -0.00002411 -0.00000905 0.06603721
0.00002411 0.99999999 -0.00014999 0.15422880
0.00000906 0.00014999 0.99999999 -0.17855768
Axis 0.98557257 -0.05949059 0.15845370
Axis point 0.00000000 1219.74219065 1039.14042838
Rotation angle (degrees) 0.00871942
Shift along axis 0.02761617
Position of Y_CRouter.pdb (#24) relative to map 20 (#25) coordinates:
Matrix rotation and translation
1.00000000 -0.00002411 -0.00000905 0.06603721
0.00002411 0.99999999 -0.00014999 0.15422880
0.00000906 0.00014999 0.99999999 -0.17855768
Axis 0.98557257 -0.05949059 0.15845370
Axis point 0.00000000 1219.74219065 1039.14042838
Rotation angle (degrees) 0.00871942
Shift along axis 0.02761617
> fitmap #25 inMap #3
Fit map map 20 in map ref_mock_CR_cut_resampled.mrc using 25762 points
correlation = 0.7559, correlation about mean = 0.4009, overlap = 364.6
steps = 36, shift = 0.0064, angle = 0.0187 degrees
Position of map 20 (#25) relative to ref_mock_CR_cut_resampled.mrc (#3)
coordinates:
Matrix rotation and translation
-0.70298476 0.71103959 -0.01533433 863.40000662
-0.71109587 -0.70309113 -0.00235184 2061.86489387
-0.01245369 0.00925087 0.99987966 -4.89643065
Axis 0.00815837 -0.00202551 -0.99996467
Axis point 862.14271662 850.69698957 0.00000000
Rotation angle (degrees) 134.67609735
Shift along axis 7.76386901
> hide #!25 models
> save
> C:/Users/dziemianowicz/Desktop/11-11-24_CRfit_(2023-11_15_mock_densityPrepModelling_bin4-on-
> bin2_structureFitting).cxs includeMaps true
> name CRatom sel
> ~select
Nothing selected
> select CRaotm
Expected an objects specifier or a keyword
> select CRatom
Nothing selected
> select CRatom
Nothing selected
Drag select of 3 ref_mock_CR_cut_resampled.mrc , 9
ref_mock_IR_cut_resampled.mrc , 10914 residues, 148340 atoms, 4 pseudobonds
> select add #3
234892 atoms, 4 pseudobonds, 29498 residues, 19 models selected
> select subtract #3
234892 atoms, 4 pseudobonds, 29498 residues, 16 models selected
> select add #9
234892 atoms, 4 pseudobonds, 29498 residues, 17 models selected
> select subtract #9
234892 atoms, 4 pseudobonds, 29498 residues, 14 models selected
> name list
CRatom sel
> select CRatom sel
Expected a keyword
> combine sel name CRatom
Remapping chain ID 'D' in hNup155_CRconnector_NTD.pdb #14 to 'E'
Remapping chain ID '0' in hNup358_1_CRouter.pdb #16 to 'AA'
Remapping chain ID '0' in hNup358_2_CRinner.pdb #17 to 'AB'
Remapping chain ID '0' in hNup358_2_CRouter.pdb #18 to 'AC'
Remapping chain ID '0' in hNup358_CRmiddle.pdb #19 to 'AD'
Remapping chain ID 'K' in Nup133_propeller_CRouter.pdb #22 to 'L'
Remapping chain ID 'R' in Nup133_propeller_CRouter.pdb #22 to 'T'
Remapping chain ID 'S' in Nup133_propeller_CRouter.pdb #22 to 'V'
Remapping chain ID 'K' in Y_CRinner.pdb #23 to 'W'
Remapping chain ID 'L' in Y_CRinner.pdb #23 to 'X'
Remapping chain ID 'R' in Y_CRinner.pdb #23 to 'Y'
Remapping chain ID 'S' in Y_CRinner.pdb #23 to 'Z'
Remapping chain ID 'A' in Y_CRouter.pdb #24 to 'B'
Remapping chain ID 'C' in Y_CRouter.pdb #24 to 'F'
Remapping chain ID 'K' in Y_CRouter.pdb #24 to 'a'
Remapping chain ID 'L' in Y_CRouter.pdb #24 to 'b'
Remapping chain ID 'M' in Y_CRouter.pdb #24 to 'c'
Remapping chain ID 'N' in Y_CRouter.pdb #24 to 'd'
Remapping chain ID 'O' in Y_CRouter.pdb #24 to 'e'
Remapping chain ID 'P' in Y_CRouter.pdb #24 to 'f'
Remapping chain ID 'Q' in Y_CRouter.pdb #24 to 'g'
Remapping chain ID 'R' in Y_CRouter.pdb #24 to 'h'
Remapping chain ID 'S' in Y_CRouter.pdb #24 to 'i'
Remapping chain ID 'U' in Y_CRouter.pdb #24 to 'j'
Remapping chain ID 'V' in Y_CRouter.pdb #24 to 'k'
Remapping chain ID 'W' in Y_CRouter.pdb #24 to 'l'
> hide #!26 models
> show #!26 models
> hide #15-22#!13-14,23-24 target m
> hide #!26 cartoons
> hide #!26 atoms
> select clear
> select add #26
234892 atoms, 239909 bonds, 6 pseudobonds, 29498 residues, 2 models selected
> show sel cartoons
> select clear
> open
> E:/ownCloud/Manuscripts/FluNPC/Figures/npc_fitting/hNup155_NRconnector_CTD.pdb
Chain information for hNup155_NRconnector_CTD.pdb #27
---
Chain | Description
D | No description available
> open
> E:/ownCloud/Manuscripts/FluNPC/Figures/npc_fitting/hNup155_NRconnector_NTD.pdb
Chain information for hNup155_NRconnector_NTD.pdb #28
---
Chain | Description
D | No description available
> open
> E:/ownCloud/Manuscripts/FluNPC/Figures/npc_fitting/Nup98_NRconnector.pdb
Chain information for Nup98_NRconnector.pdb #29
---
Chain | Description
U | No description available
> open
> E:/ownCloud/Manuscripts/FluNPC/Figures/npc_fitting/Nup133_propeller_NRinner.pdb
Chain information for Nup133_propeller_NRinner.pdb #30
---
Chain | Description
K | No description available
R | No description available
S | No description available
T | No description available
> open
> E:/ownCloud/Manuscripts/FluNPC/Figures/npc_fitting/Nup133_propeller_NRouter.pdb
Chain information for Nup133_propeller_NRouter.pdb #31
---
Chain | Description
K | No description available
R | No description available
S | No description available
T | No description available
> open E:/ownCloud/Manuscripts/FluNPC/Figures/npc_fitting/Y_NRinner.pdb
Chain information for Y_NRinner.pdb #32
---
Chain | Description
K | No description available
L | No description available
M | No description available
N | No description available
O | No description available
P | No description available
Q | No description available
R | No description available
S | No description available
T | No description available
> open E:/ownCloud/Manuscripts/FluNPC/Figures/npc_fitting/Y_NRouter.pdb
Chain information for Y_NRouter.pdb #33
---
Chain | Description
A | No description available
C | No description available
K | No description available
L | No description available
M | No description available
N | No description available
O | No description available
P | No description available
Q | No description available
R | No description available
S | No description available
T | No description available
Drag select of 9169 residues, 131687 atoms, 4 pseudobonds
> ui mousemode right "translate selected models"
> view matrix models
> #27,1,0,0,866.09,0,1,0,203.02,0,0,1,12.728,#28,1,0,0,866.09,0,1,0,203.02,0,0,1,12.728,#29,1,0,0,866.09,0,1,0,203.02,0,0,1,12.728,#30,1,0,0,866.09,0,1,0,203.02,0,0,1,12.728,#31,1,0,0,866.09,0,1,0,203.02,0,0,1,12.728,#32,1,0,0,866.09,0,1,0,203.02,0,0,1,12.728,#33,1,0,0,866.09,0,1,0,203.02,0,0,1,12.728
> view matrix models
> #27,1,0,0,744.03,0,1,0,343.45,0,0,1,2.6306,#28,1,0,0,744.03,0,1,0,343.45,0,0,1,2.6306,#29,1,0,0,744.03,0,1,0,343.45,0,0,1,2.6306,#30,1,0,0,744.03,0,1,0,343.45,0,0,1,2.6306,#31,1,0,0,744.03,0,1,0,343.45,0,0,1,2.6306,#32,1,0,0,744.03,0,1,0,343.45,0,0,1,2.6306,#33,1,0,0,744.03,0,1,0,343.45,0,0,1,2.6306
> ui mousemode right "rotate selected models"
> view matrix models
> #27,-0.82829,0.55789,-0.051885,940.72,-0.53288,-0.81299,-0.23471,2231.1,-0.17313,-0.16676,0.97068,228.08,#28,-0.82829,0.55789,-0.051885,940.72,-0.53288,-0.81299,-0.23471,2231.1,-0.17313,-0.16676,0.97068,228.08,#29,-0.82829,0.55789,-0.051885,940.72,-0.53288,-0.81299,-0.23471,2231.1,-0.17313,-0.16676,0.97068,228.08,#30,-0.82829,0.55789,-0.051885,940.72,-0.53288,-0.81299,-0.23471,2231.1,-0.17313,-0.16676,0.97068,228.08,#31,-0.82829,0.55789,-0.051885,940.72,-0.53288,-0.81299,-0.23471,2231.1,-0.17313,-0.16676,0.97068,228.08,#32,-0.82829,0.55789,-0.051885,940.72,-0.53288,-0.81299,-0.23471,2231.1,-0.17313,-0.16676,0.97068,228.08,#33,-0.82829,0.55789,-0.051885,940.72,-0.53288,-0.81299,-0.23471,2231.1,-0.17313,-0.16676,0.97068,228.08
> ui mousemode right "translate selected models"
> view matrix models
> #27,-0.82829,0.55789,-0.051885,1010.8,-0.53288,-0.81299,-0.23471,2146.3,-0.17313,-0.16676,0.97068,198.19,#28,-0.82829,0.55789,-0.051885,1010.8,-0.53288,-0.81299,-0.23471,2146.3,-0.17313,-0.16676,0.97068,198.19,#29,-0.82829,0.55789,-0.051885,1010.8,-0.53288,-0.81299,-0.23471,2146.3,-0.17313,-0.16676,0.97068,198.19,#30,-0.82829,0.55789,-0.051885,1010.8,-0.53288,-0.81299,-0.23471,2146.3,-0.17313,-0.16676,0.97068,198.19,#31,-0.82829,0.55789,-0.051885,1010.8,-0.53288,-0.81299,-0.23471,2146.3,-0.17313,-0.16676,0.97068,198.19,#32,-0.82829,0.55789,-0.051885,1010.8,-0.53288,-0.81299,-0.23471,2146.3,-0.17313,-0.16676,0.97068,198.19,#33,-0.82829,0.55789,-0.051885,1010.8,-0.53288,-0.81299,-0.23471,2146.3,-0.17313,-0.16676,0.97068,198.19
> view matrix models
> #27,-0.82829,0.55789,-0.051885,1069.1,-0.53288,-0.81299,-0.23471,2179.2,-0.17313,-0.16676,0.97068,198.82,#28,-0.82829,0.55789,-0.051885,1069.1,-0.53288,-0.81299,-0.23471,2179.2,-0.17313,-0.16676,0.97068,198.82,#29,-0.82829,0.55789,-0.051885,1069.1,-0.53288,-0.81299,-0.23471,2179.2,-0.17313,-0.16676,0.97068,198.82,#30,-0.82829,0.55789,-0.051885,1069.1,-0.53288,-0.81299,-0.23471,2179.2,-0.17313,-0.16676,0.97068,198.82,#31,-0.82829,0.55789,-0.051885,1069.1,-0.53288,-0.81299,-0.23471,2179.2,-0.17313,-0.16676,0.97068,198.82,#32,-0.82829,0.55789,-0.051885,1069.1,-0.53288,-0.81299,-0.23471,2179.2,-0.17313,-0.16676,0.97068,198.82,#33,-0.82829,0.55789,-0.051885,1069.1,-0.53288,-0.81299,-0.23471,2179.2,-0.17313,-0.16676,0.97068,198.82
> view matrix models
> #27,-0.82829,0.55789,-0.051885,1057,-0.53288,-0.81299,-0.23471,2230.2,-0.17313,-0.16676,0.97068,208.38,#28,-0.82829,0.55789,-0.051885,1057,-0.53288,-0.81299,-0.23471,2230.2,-0.17313,-0.16676,0.97068,208.38,#29,-0.82829,0.55789,-0.051885,1057,-0.53288,-0.81299,-0.23471,2230.2,-0.17313,-0.16676,0.97068,208.38,#30,-0.82829,0.55789,-0.051885,1057,-0.53288,-0.81299,-0.23471,2230.2,-0.17313,-0.16676,0.97068,208.38,#31,-0.82829,0.55789,-0.051885,1057,-0.53288,-0.81299,-0.23471,2230.2,-0.17313,-0.16676,0.97068,208.38,#32,-0.82829,0.55789,-0.051885,1057,-0.53288,-0.81299,-0.23471,2230.2,-0.17313,-0.16676,0.97068,208.38,#33,-0.82829,0.55789,-0.051885,1057,-0.53288,-0.81299,-0.23471,2230.2,-0.17313,-0.16676,0.97068,208.38
> view matrix models
> #27,-0.82829,0.55789,-0.051885,1043.1,-0.53288,-0.81299,-0.23471,2239.4,-0.17313,-0.16676,0.97068,214.29,#28,-0.82829,0.55789,-0.051885,1043.1,-0.53288,-0.81299,-0.23471,2239.4,-0.17313,-0.16676,0.97068,214.29,#29,-0.82829,0.55789,-0.051885,1043.1,-0.53288,-0.81299,-0.23471,2239.4,-0.17313,-0.16676,0.97068,214.29,#30,-0.82829,0.55789,-0.051885,1043.1,-0.53288,-0.81299,-0.23471,2239.4,-0.17313,-0.16676,0.97068,214.29,#31,-0.82829,0.55789,-0.051885,1043.1,-0.53288,-0.81299,-0.23471,2239.4,-0.17313,-0.16676,0.97068,214.29,#32,-0.82829,0.55789,-0.051885,1043.1,-0.53288,-0.81299,-0.23471,2239.4,-0.17313,-0.16676,0.97068,214.29,#33,-0.82829,0.55789,-0.051885,1043.1,-0.53288,-0.81299,-0.23471,2239.4,-0.17313,-0.16676,0.97068,214.29
> volume #10 level 0.05607
> lighting soft
> lighting simple
> view matrix models
> #27,-0.82829,0.55789,-0.051885,1043.6,-0.53288,-0.81299,-0.23471,2240.1,-0.17313,-0.16676,0.97068,193.21,#28,-0.82829,0.55789,-0.051885,1043.6,-0.53288,-0.81299,-0.23471,2240.1,-0.17313,-0.16676,0.97068,193.21,#29,-0.82829,0.55789,-0.051885,1043.6,-0.53288,-0.81299,-0.23471,2240.1,-0.17313,-0.16676,0.97068,193.21,#30,-0.82829,0.55789,-0.051885,1043.6,-0.53288,-0.81299,-0.23471,2240.1,-0.17313,-0.16676,0.97068,193.21,#31,-0.82829,0.55789,-0.051885,1043.6,-0.53288,-0.81299,-0.23471,2240.1,-0.17313,-0.16676,0.97068,193.21,#32,-0.82829,0.55789,-0.051885,1043.6,-0.53288,-0.81299,-0.23471,2240.1,-0.17313,-0.16676,0.97068,193.21,#33,-0.82829,0.55789,-0.051885,1043.6,-0.53288,-0.81299,-0.23471,2240.1,-0.17313,-0.16676,0.97068,193.21
> ui mousemode right "rotate selected models"
> view matrix models
> #27,-0.80852,0.53306,0.24927,860.64,-0.53911,-0.84078,0.049375,2080.1,0.2359,-0.094465,0.96717,-13.473,#28,-0.80852,0.53306,0.24927,860.64,-0.53911,-0.84078,0.049375,2080.1,0.2359,-0.094465,0.96717,-13.473,#29,-0.80852,0.53306,0.24927,860.64,-0.53911,-0.84078,0.049375,2080.1,0.2359,-0.094465,0.96717,-13.473,#30,-0.80852,0.53306,0.24927,860.64,-0.53911,-0.84078,0.049375,2080.1,0.2359,-0.094465,0.96717,-13.473,#31,-0.80852,0.53306,0.24927,860.64,-0.53911,-0.84078,0.049375,2080.1,0.2359,-0.094465,0.96717,-13.473,#32,-0.80852,0.53306,0.24927,860.64,-0.53911,-0.84078,0.049375,2080.1,0.2359,-0.094465,0.96717,-13.473,#33,-0.80852,0.53306,0.24927,860.64,-0.53911,-0.84078,0.049375,2080.1,0.2359,-0.094465,0.96717,-13.473
> ui mousemode right "translate selected models"
> view matrix models
> #27,-0.80852,0.53306,0.24927,860.06,-0.53911,-0.84078,0.049375,2086.1,0.2359,-0.094465,0.96717,3.4769,#28,-0.80852,0.53306,0.24927,860.06,-0.53911,-0.84078,0.049375,2086.1,0.2359,-0.094465,0.96717,3.4769,#29,-0.80852,0.53306,0.24927,860.06,-0.53911,-0.84078,0.049375,2086.1,0.2359,-0.094465,0.96717,3.4769,#30,-0.80852,0.53306,0.24927,860.06,-0.53911,-0.84078,0.049375,2086.1,0.2359,-0.094465,0.96717,3.4769,#31,-0.80852,0.53306,0.24927,860.06,-0.53911,-0.84078,0.049375,2086.1,0.2359,-0.094465,0.96717,3.4769,#32,-0.80852,0.53306,0.24927,860.06,-0.53911,-0.84078,0.049375,2086.1,0.2359,-0.094465,0.96717,3.4769,#33,-0.80852,0.53306,0.24927,860.06,-0.53911,-0.84078,0.049375,2086.1,0.2359,-0.094465,0.96717,3.4769
> rename #25 "CR_map 20"
> molmap sel 20
Opened map 20 as #34, grid size 68,120,66, pixel 6.67, shown at level 0.0471,
step 1, values float32
> save
> C:/Users/dziemianowicz/Desktop/11-11-24_CR_NRfit_(2023-11_15_mock_densityPrepModelling_bin4-on-
> bin2_structureFitting).cxs includeMaps true
> hide #!10 models
> show #!10 models
> fitmap #34 inMap #10
Fit map map 20 in map ref_mock_NR_cut_resampled.mrc using 20253 points
correlation = 0.7401, correlation about mean = 0.3541, overlap = 288.4
steps = 80, shift = 18.4, angle = 18.9 degrees
Position of map 20 (#34) relative to ref_mock_NR_cut_resampled.mrc (#10)
coordinates:
Matrix rotation and translation
-0.69445983 0.71943370 0.01186173 835.40825135
-0.71915026 -0.69453414 0.02110061 2042.19344586
0.02341887 0.00612317 0.99970700 -12.51880407
Axis -0.01041034 -0.00803300 -0.99991354
Axis point 851.22762300 843.84950420 0.00000000
Rotation angle (degrees) 133.99881464
Shift along axis -12.58409824
> fitmap sel inMap #34
Fit molecules hNup155_NRconnector_CTD.pdb (#27), hNup155_NRconnector_NTD.pdb
(#28), Nup98_NRconnector.pdb (#29), Nup133_propeller_NRinner.pdb (#30),
Nup133_propeller_NRouter.pdb (#31), Y_NRinner.pdb (#32), Y_NRouter.pdb (#33)
to map map 20 (#34) using 203994 atoms
average map value = 0.2995, steps = 124
shifted from previous position = 17.1
rotated from previous position = 18.9 degrees
atoms outside contour = 117, contour level = 0.0471
Position of hNup155_NRconnector_CTD.pdb (#27) relative to map 20 (#34)
coordinates:
Matrix rotation and translation
0.99999999 0.00012534 0.00005549 -0.10883655
-0.00012535 0.99999999 0.00007249 -0.01295485
-0.00005548 -0.00007250 1.00000000 0.10033004
Axis -0.46752198 0.35782823 -0.80832058
Axis point -3.94630624 998.29992145 0.00000000
Rotation angle (degrees) 0.00888478
Shift along axis -0.03485097
Position of hNup155_NRconnector_NTD.pdb (#28) relative to map 20 (#34)
coordinates:
Matrix rotation and translation
0.99999999 0.00012534 0.00005549 -0.10883655
-0.00012535 0.99999999 0.00007249 -0.01295485
-0.00005548 -0.00007250 1.00000000 0.10033004
Axis -0.46752198 0.35782823 -0.80832058
Axis point -3.94630624 998.29992145 0.00000000
Rotation angle (degrees) 0.00888478
Shift along axis -0.03485097
Position of Nup98_NRconnector.pdb (#29) relative to map 20 (#34) coordinates:
Matrix rotation and translation
0.99999999 0.00012534 0.00005549 -0.10883655
-0.00012535 0.99999999 0.00007249 -0.01295485
-0.00005548 -0.00007250 1.00000000 0.10033004
Axis -0.46752198 0.35782823 -0.80832058
Axis point -3.94630624 998.29992145 0.00000000
Rotation angle (degrees) 0.00888478
Shift along axis -0.03485097
Position of Nup133_propeller_NRinner.pdb (#30) relative to map 20 (#34)
coordinates:
Matrix rotation and translation
0.99999999 0.00012534 0.00005549 -0.10883655
-0.00012535 0.99999999 0.00007249 -0.01295485
-0.00005548 -0.00007250 1.00000000 0.10033004
Axis -0.46752198 0.35782823 -0.80832058
Axis point -3.94630624 998.29992145 0.00000000
Rotation angle (degrees) 0.00888478
Shift along axis -0.03485097
Position of Nup133_propeller_NRouter.pdb (#31) relative to map 20 (#34)
coordinates:
Matrix rotation and translation
0.99999999 0.00012534 0.00005549 -0.10883655
-0.00012535 0.99999999 0.00007249 -0.01295485
-0.00005548 -0.00007250 1.00000000 0.10033004
Axis -0.46752198 0.35782823 -0.80832058
Axis point -3.94630624 998.29992145 0.00000000
Rotation angle (degrees) 0.00888478
Shift along axis -0.03485097
Position of Y_NRinner.pdb (#32) relative to map 20 (#34) coordinates:
Matrix rotation and translation
0.99999999 0.00012534 0.00005549 -0.10883655
-0.00012535 0.99999999 0.00007249 -0.01295485
-0.00005548 -0.00007250 1.00000000 0.10033004
Axis -0.46752198 0.35782823 -0.80832058
Axis point -3.94630624 998.29992145 0.00000000
Rotation angle (degrees) 0.00888478
Shift along axis -0.03485097
Position of Y_NRouter.pdb (#33) relative to map 20 (#34) coordinates:
Matrix rotation and translation
0.99999999 0.00012534 0.00005549 -0.10883655
-0.00012535 0.99999999 0.00007249 -0.01295485
-0.00005548 -0.00007250 1.00000000 0.10033004
Axis -0.46752198 0.35782823 -0.80832058
Axis point -3.94630624 998.29992145 0.00000000
Rotation angle (degrees) 0.00888478
Shift along axis -0.03485097
> rename #34 "NRmap 20"
> hide #!34 models
> save
> C:/Users/dziemianowicz/Desktop/11-11-24_CR_NRfit_(2023-11_15_mock_densityPrepModelling_bin4-on-
> bin2_structureFitting).cxs includeMaps true
> select clear
> select add #27
10364 atoms, 10569 bonds, 1 pseudobond, 1312 residues, 2 models selected
> select add #28
20728 atoms, 21138 bonds, 2 pseudobonds, 2624 residues, 4 models selected
> select add #29
20895 atoms, 21306 bonds, 2 pseudobonds, 2645 residues, 5 models selected
> select add #30
46601 atoms, 47596 bonds, 2 pseudobonds, 5907 residues, 6 models selected
> select add #31
72307 atoms, 73886 bonds, 2 pseudobonds, 9169 residues, 7 models selected
> select add #32
127214 atoms, 130024 bonds, 4 pseudobonds, 16059 residues, 9 models selected
> select add #33
203994 atoms, 208464 bonds, 6 pseudobonds, 25686 residues, 11 models selected
> combine sel name NRatom
Remapping chain ID 'D' in hNup155_NRconnector_NTD.pdb #28 to 'E'
Remapping chain ID 'K' in Nup133_propeller_NRouter.pdb #31 to 'L'
Remapping chain ID 'R' in Nup133_propeller_NRouter.pdb #31 to 'V'
Remapping chain ID 'S' in Nup133_propeller_NRouter.pdb #31 to 'W'
Remapping chain ID 'T' in Nup133_propeller_NRouter.pdb #31 to 'X'
Remapping chain ID 'K' in Y_NRinner.pdb #32 to 'Y'
Remapping chain ID 'L' in Y_NRinner.pdb #32 to 'Z'
Remapping chain ID 'R' in Y_NRinner.pdb #32 to 'a'
Remapping chain ID 'S' in Y_NRinner.pdb #32 to 'b'
Remapping chain ID 'T' in Y_NRinner.pdb #32 to 'c'
Remapping chain ID 'K' in Y_NRouter.pdb #33 to 'd'
Remapping chain ID 'L' in Y_NRouter.pdb #33 to 'e'
Remapping chain ID 'M' in Y_NRouter.pdb #33 to 'f'
Remapping chain ID 'N' in Y_NRouter.pdb #33 to 'g'
Remapping chain ID 'O' in Y_NRouter.pdb #33 to 'h'
Remapping chain ID 'P' in Y_NRouter.pdb #33 to 'i'
Remapping chain ID 'Q' in Y_NRouter.pdb #33 to 'j'
Remapping chain ID 'R' in Y_NRouter.pdb #33 to 'k'
Remapping chain ID 'S' in Y_NRouter.pdb #33 to 'l'
Remapping chain ID 'T' in Y_NRouter.pdb #33 to 'm'
> hide sel cartoons
> hide sel atoms
> select clear
> select add #35
203994 atoms, 208464 bonds, 6 pseudobonds, 25686 residues, 2 models selected
> hide sel atoms
> hide sel cartoons
> show sel cartoons
> hide sel cartoons
> select add #26
438886 atoms, 448373 bonds, 12 pseudobonds, 55184 residues, 4 models selected
> hide sel cartoons
> open
> E:/ownCloud/Manuscripts/FluNPC/Figures/npc_fitting/hNup53_dimer_IRcyt_outerG7.pdb
Chain information for hNup53_dimer_IRcyt_outerG7.pdb #36
---
Chain | Description
F | No description available
> open
> E:/ownCloud/Manuscripts/FluNPC/Figures/npc_fitting/hNup53_dimer_IRnuc_innerF0.pdb
Chain information for hNup53_dimer_IRnuc_innerF0.pdb #37
---
Chain | Description
F | No description available
> open
> E:/ownCloud/Manuscripts/FluNPC/Figures/npc_fitting/hNup53_dimer_IRnuc_outerG0.pdb
Chain information for hNup53_dimer_IRnuc_outerG0.pdb #38
---
Chain | Description
F | No description available
> open
> E:/ownCloud/Manuscripts/FluNPC/Figures/npc_fitting/hNups_IRcyt_inner.pdb
Chain information for hNups_IRcyt_inner.pdb #39
---
Chain | Description
4 | No description available
A | No description available
C | No description available
D | No description available
E | No description available
F | No description available
H | No description available
I | No description available
J | No description available
U | No description available
> open
> E:/ownCloud/Manuscripts/FluNPC/Figures/npc_fitting/hNups_IRcyt_outer.pdb
Chain information for hNups_IRcyt_outer.pdb #40
---
Chain | Description
A | No description available
B | No description available
D | No description available
F | No description available
H | No description available
I | No description available
J | No description available
U | No description available
> open
> E:/ownCloud/Manuscripts/FluNPC/Figures/npc_fitting/hNups_IRnuc_inner.pdb
Chain information for hNups_IRnuc_inner.pdb #41
---
Chain | Description
4 | No description available
A | No description available
C | No description available
D | No description available
E | No description available
F | No description available
H | No description available
I | No description available
J | No description available
U | No description available
> open
> E:/ownCloud/Manuscripts/FluNPC/Figures/npc_fitting/hNups_IRnuc_outer.pdb
Chain information for hNups_IRnuc_outer.pdb #42
---
Chain | Description
A | No description available
B | No description available
D | No description available
F | No description available
H | No description available
I | No description available
J | No description available
U | No description available
> open
> E:/ownCloud/Manuscripts/FluNPC/Figures/npc_fitting/hNup53_dimer_IRcyt_innerF7.pdb
Chain information for hNup53_dimer_IRcyt_innerF7.pdb #43
---
Chain | Description
F | No description available
> ui tool show "Side View"
Drag select of 356 residues, 173648 atoms, 8 pseudobonds
> view matrix models
> #36,1,0,0,547.06,0,1,0,307.6,0,0,1,-14.905,#37,1,0,0,547.06,0,1,0,307.6,0,0,1,-14.905,#38,1,0,0,547.06,0,1,0,307.6,0,0,1,-14.905,#39,1,0,0,547.06,0,1,0,307.6,0,0,1,-14.905,#40,1,0,0,547.06,0,1,0,307.6,0,0,1,-14.905,#41,1,0,0,547.06,0,1,0,307.6,0,0,1,-14.905,#42,1,0,0,547.06,0,1,0,307.6,0,0,1,-14.905,#43,1,0,0,547.06,0,1,0,307.6,0,0,1,-14.905
> ui mousemode right "rotate selected models"
> view matrix models
> #36,-0.92673,0.36961,-0.067537,1029,-0.37571,-0.90972,0.17676,1984.4,0.0038925,0.18919,0.98193,-167.46,#37,-0.92673,0.36961,-0.067537,1029,-0.37571,-0.90972,0.17676,1984.4,0.0038925,0.18919,0.98193,-167.46,#38,-0.92673,0.36961,-0.067537,1029,-0.37571,-0.90972,0.17676,1984.4,0.0038925,0.18919,0.98193,-167.46,#39,-0.92673,0.36961,-0.067537,1029,-0.37571,-0.90972,0.17676,1984.4,0.0038925,0.18919,0.98193,-167.46,#40,-0.92673,0.36961,-0.067537,1029,-0.37571,-0.90972,0.17676,1984.4,0.0038925,0.18919,0.98193,-167.46,#41,-0.92673,0.36961,-0.067537,1029,-0.37571,-0.90972,0.17676,1984.4,0.0038925,0.18919,0.98193,-167.46,#42,-0.92673,0.36961,-0.067537,1029,-0.37571,-0.90972,0.17676,1984.4,0.0038925,0.18919,0.98193,-167.46,#43,-0.92673,0.36961,-0.067537,1029,-0.37571,-0.90972,0.17676,1984.4,0.0038925,0.18919,0.98193,-167.46
> ui mousemode right "translate selected models"
> view matrix models
> #36,-0.92673,0.36961,-0.067537,1227.2,-0.37571,-0.90972,0.17676,2102.7,0.0038925,0.18919,0.98193,-184.51,#37,-0.92673,0.36961,-0.067537,1227.2,-0.37571,-0.90972,0.17676,2102.7,0.0038925,0.18919,0.98193,-184.51,#38,-0.92673,0.36961,-0.067537,1227.2,-0.37571,-0.90972,0.17676,2102.7,0.0038925,0.18919,0.98193,-184.51,#39,-0.92673,0.36961,-0.067537,1227.2,-0.37571,-0.90972,0.17676,2102.7,0.0038925,0.18919,0.98193,-184.51,#40,-0.92673,0.36961,-0.067537,1227.2,-0.37571,-0.90972,0.17676,2102.7,0.0038925,0.18919,0.98193,-184.51,#41,-0.92673,0.36961,-0.067537,1227.2,-0.37571,-0.90972,0.17676,2102.7,0.0038925,0.18919,0.98193,-184.51,#42,-0.92673,0.36961,-0.067537,1227.2,-0.37571,-0.90972,0.17676,2102.7,0.0038925,0.18919,0.98193,-184.51,#43,-0.92673,0.36961,-0.067537,1227.2,-0.37571,-0.90972,0.17676,2102.7,0.0038925,0.18919,0.98193,-184.51
> view matrix models
> #36,-0.92673,0.36961,-0.067537,1330.7,-0.37571,-0.90972,0.17676,1977.8,0.0038925,0.18919,0.98193,-168.55,#37,-0.92673,0.36961,-0.067537,1330.7,-0.37571,-0.90972,0.17676,1977.8,0.0038925,0.18919,0.98193,-168.55,#38,-0.92673,0.36961,-0.067537,1330.7,-0.37571,-0.90972,0.17676,1977.8,0.0038925,0.18919,0.98193,-168.55,#39,-0.92673,0.36961,-0.067537,1330.7,-0.37571,-0.90972,0.17676,1977.8,0.0038925,0.18919,0.98193,-168.55,#40,-0.92673,0.36961,-0.067537,1330.7,-0.37571,-0.90972,0.17676,1977.8,0.0038925,0.18919,0.98193,-168.55,#41,-0.92673,0.36961,-0.067537,1330.7,-0.37571,-0.90972,0.17676,1977.8,0.0038925,0.18919,0.98193,-168.55,#42,-0.92673,0.36961,-0.067537,1330.7,-0.37571,-0.90972,0.17676,1977.8,0.0038925,0.18919,0.98193,-168.55,#43,-0.92673,0.36961,-0.067537,1330.7,-0.37571,-0.90972,0.17676,1977.8,0.0038925,0.18919,0.98193,-168.55
> view matrix models
> #36,-0.92673,0.36961,-0.067537,1305.1,-0.37571,-0.90972,0.17676,1960.2,0.0038925,0.18919,0.98193,-170.81,#37,-0.92673,0.36961,-0.067537,1305.1,-0.37571,-0.90972,0.17676,1960.2,0.0038925,0.18919,0.98193,-170.81,#38,-0.92673,0.36961,-0.067537,1305.1,-0.37571,-0.90972,0.17676,1960.2,0.0038925,0.18919,0.98193,-170.81,#39,-0.92673,0.36961,-0.067537,1305.1,-0.37571,-0.90972,0.17676,1960.2,0.0038925,0.18919,0.98193,-170.81,#40,-0.92673,0.36961,-0.067537,1305.1,-0.37571,-0.90972,0.17676,1960.2,0.0038925,0.18919,0.98193,-170.81,#41,-0.92673,0.36961,-0.067537,1305.1,-0.37571,-0.90972,0.17676,1960.2,0.0038925,0.18919,0.98193,-170.81,#42,-0.92673,0.36961,-0.067537,1305.1,-0.37571,-0.90972,0.17676,1960.2,0.0038925,0.18919,0.98193,-170.81,#43,-0.92673,0.36961,-0.067537,1305.1,-0.37571,-0.90972,0.17676,1960.2,0.0038925,0.18919,0.98193,-170.81
> molmap sel 20
Opened map 20 as #44, grid size 60,81,62, pixel 6.67, shown at level 0.0418,
step 1, values float32
> hide #!9 models
> show #!9 models
> fitmap #44 inMap #9
Fit map map 20 in map ref_mock_IR_cut_resampled.mrc using 22079 points
correlation = 0.7451, correlation about mean = 0.377, overlap = 219.2
steps = 84, shift = 19.4, angle = 24.6 degrees
Position of map 20 (#44) relative to ref_mock_IR_cut_resampled.mrc (#9)
coordinates:
Matrix rotation and translation
-0.71406643 0.70007758 -0.00072354 863.76870492
-0.70004324 -0.71402036 0.01069548 2054.06622661
0.00697105 0.00814379 0.99994254 -9.52250781
Axis -0.00182245 -0.00549557 -0.99998324
Axis point 851.36365319 850.66463512 0.00000000
Rotation angle (degrees) 135.56720753
Shift along axis -3.34008014
> fitmap #44 inMap #9
Fit map map 20 in map ref_mock_IR_cut_resampled.mrc using 22079 points
correlation = 0.7452, correlation about mean = 0.3769, overlap = 219.1
steps = 40, shift = 0.101, angle = 0.0359 degrees
Position of map 20 (#44) relative to ref_mock_IR_cut_resampled.mrc (#9)
coordinates:
Matrix rotation and translation
-0.71405365 0.70009017 -0.00107141 864.03637002
-0.70006212 -0.71400947 0.01017373 2054.54379709
0.00635753 0.00801464 0.99994768 -9.07069264
Axis -0.00154201 -0.00530573 -0.99998474
Axis point 851.60534915 850.84148964 0.00000000
Rotation angle (degrees) 135.56602920
Shift along axis -3.16265128
> fitmap sel inMap #44
Fit molecules hNup53_dimer_IRcyt_outerG7.pdb (#36),
hNup53_dimer_IRnuc_innerF0.pdb (#37), hNup53_dimer_IRnuc_outerG0.pdb (#38),
hNups_IRcyt_inner.pdb (#39), hNups_IRcyt_outer.pdb (#40),
hNups_IRnuc_inner.pdb (#41), hNups_IRnuc_outer.pdb (#42),
hNup53_dimer_IRcyt_innerF7.pdb (#43) to map map 20 (#44) using 176440 atoms
average map value = 0.2222, steps = 116
shifted from previous position = 19.5
rotated from previous position = 24.6 degrees
atoms outside contour = 30, contour level = 0.041829
Position of hNup53_dimer_IRcyt_outerG7.pdb (#36) relative to map 20 (#44)
coordinates:
Matrix rotation and translation
0.99999999 -0.00008653 0.00007541 0.00245894
0.00008651 0.99999996 0.00026594 -0.25823135
-0.00007543 -0.00026593 0.99999996 0.29278920
Axis -0.91813508 0.26039502 0.29870120
Axis point 0.00000000 1080.68608144 988.76459636
Rotation angle (degrees) 0.01659549
Shift along axis 0.01795668
Position of hNup53_dimer_IRnuc_innerF0.pdb (#37) relative to map 20 (#44)
coordinates:
Matrix rotation and translation
0.99999999 -0.00008653 0.00007541 0.00245894
0.00008651 0.99999996 0.00026594 -0.25823135
-0.00007543 -0.00026593 0.99999996 0.29278920
Axis -0.91813508 0.26039502 0.29870120
Axis point 0.00000000 1080.68608144 988.76459636
Rotation angle (degrees) 0.01659549
Shift along axis 0.01795668
Position of hNup53_dimer_IRnuc_outerG0.pdb (#38) relative to map 20 (#44)
coordinates:
Matrix rotation and translation
0.99999999 -0.00008653 0.00007541 0.00245894
0.00008651 0.99999996 0.00026594 -0.25823135
-0.00007543 -0.00026593 0.99999996 0.29278920
Axis -0.91813508 0.26039502 0.29870120
Axis point 0.00000000 1080.68608144 988.76459636
Rotation angle (degrees) 0.01659549
Shift along axis 0.01795668
Position of hNups_IRcyt_inner.pdb (#39) relative to map 20 (#44) coordinates:
Matrix rotation and translation
0.99999999 -0.00008653 0.00007541 0.00245894
0.00008651 0.99999996 0.00026594 -0.25823135
-0.00007543 -0.00026593 0.99999996 0.29278920
Axis -0.91813508 0.26039502 0.29870120
Axis point 0.00000000 1080.68608144 988.76459636
Rotation angle (degrees) 0.01659549
Shift along axis 0.01795668
Position of hNups_IRcyt_outer.pdb (#40) relative to map 20 (#44) coordinates:
Matrix rotation and translation
0.99999999 -0.00008653 0.00007541 0.00245894
0.00008651 0.99999996 0.00026594 -0.25823135
-0.00007543 -0.00026593 0.99999996 0.29278920
Axis -0.91813508 0.26039502 0.29870120
Axis point 0.00000000 1080.68608144 988.76459636
Rotation angle (degrees) 0.01659549
Shift along axis 0.01795668
Position of hNups_IRnuc_inner.pdb (#41) relative to map 20 (#44) coordinates:
Matrix rotation and translation
0.99999999 -0.00008653 0.00007541 0.00245894
0.00008651 0.99999996 0.00026594 -0.25823135
-0.00007543 -0.00026593 0.99999996 0.29278920
Axis -0.91813508 0.26039502 0.29870120
Axis point 0.00000000 1080.68608144 988.76459636
Rotation angle (degrees) 0.01659549
Shift along axis 0.01795668
Position of hNups_IRnuc_outer.pdb (#42) relative to map 20 (#44) coordinates:
Matrix rotation and translation
0.99999999 -0.00008653 0.00007541 0.00245894
0.00008651 0.99999996 0.00026594 -0.25823135
-0.00007543 -0.00026593 0.99999996 0.29278920
Axis -0.91813508 0.26039502 0.29870120
Axis point 0.00000000 1080.68608144 988.76459636
Rotation angle (degrees) 0.01659549
Shift along axis 0.01795668
Position of hNup53_dimer_IRcyt_innerF7.pdb (#43) relative to map 20 (#44)
coordinates:
Matrix rotation and translation
0.99999999 -0.00008653 0.00007541 0.00245894
0.00008651 0.99999996 0.00026594 -0.25823135
-0.00007543 -0.00026593 0.99999996 0.29278920
Axis -0.91813508 0.26039502 0.29870120
Axis point 0.00000000 1080.68608144 988.76459636
Rotation angle (degrees) 0.01659549
Shift along axis 0.01795668
> hide #!44 models
> rename #44 "IRmap 20"
> combine sel name IRatom
Remapping chain ID 'F' in hNup53_dimer_IRnuc_innerF0.pdb #37 to 'G'
Remapping chain ID 'F' in hNup53_dimer_IRnuc_outerG0.pdb #38 to 'H'
Remapping chain ID 'F' in hNups_IRcyt_inner.pdb #39 to 'K'
Remapping chain ID 'H' in hNups_IRcyt_inner.pdb #39 to 'L'
Remapping chain ID 'A' in hNups_IRcyt_outer.pdb #40 to 'M'
Remapping chain ID 'D' in hNups_IRcyt_outer.pdb #40 to 'N'
Remapping chain ID 'F' in hNups_IRcyt_outer.pdb #40 to 'O'
Remapping chain ID 'H' in hNups_IRcyt_outer.pdb #40 to 'P'
Remapping chain ID 'I' in hNups_IRcyt_outer.pdb #40 to 'Q'
Remapping chain ID 'J' in hNups_IRcyt_outer.pdb #40 to 'R'
Remapping chain ID 'U' in hNups_IRcyt_outer.pdb #40 to 'V'
Remapping chain ID '4' in hNups_IRnuc_inner.pdb #41 to '5'
Remapping chain ID 'A' in hNups_IRnuc_inner.pdb #41 to 'S'
Remapping chain ID 'C' in hNups_IRnuc_inner.pdb #41 to 'T'
Remapping chain ID 'D' in hNups_IRnuc_inner.pdb #41 to 'W'
Remapping chain ID 'E' in hNups_IRnuc_inner.pdb #41 to 'X'
Remapping chain ID 'F' in hNups_IRnuc_inner.pdb #41 to 'Y'
Remapping chain ID 'H' in hNups_IRnuc_inner.pdb #41 to 'Z'
Remapping chain ID 'I' in hNups_IRnuc_inner.pdb #41 to 'a'
Remapping chain ID 'J' in hNups_IRnuc_inner.pdb #41 to 'b'
Remapping chain ID 'U' in hNups_IRnuc_inner.pdb #41 to 'c'
Remapping chain ID 'A' in hNups_IRnuc_outer.pdb #42 to 'd'
Remapping chain ID 'B' in hNups_IRnuc_outer.pdb #42 to 'e'
Remapping chain ID 'D' in hNups_IRnuc_outer.pdb #42 to 'f'
Remapping chain ID 'F' in hNups_IRnuc_outer.pdb #42 to 'g'
Remapping chain ID 'H' in hNups_IRnuc_outer.pdb #42 to 'h'
Remapping chain ID 'I' in hNups_IRnuc_outer.pdb #42 to 'i'
Remapping chain ID 'J' in hNups_IRnuc_outer.pdb #42 to 'j'
Remapping chain ID 'U' in hNups_IRnuc_outer.pdb #42 to 'k'
Remapping chain ID 'F' in hNup53_dimer_IRcyt_innerF7.pdb #43 to 'l'
> hide sel cartoons
> hide sel atoms
> select add #45
352880 atoms, 179922 bonds, 16 pseudobonds, 44480 residues, 14 models selected
> hide sel atoms
> show sel cartoons
> save
> C:/Users/dziemianowicz/Desktop/11-11-24_CR_NR_IRfit_(2023-11_15_mock_densityPrepModelling_bin4-on-
> bin2_structureFitting).cxs includeMaps true
> select clear
> select add #45
176440 atoms, 179922 bonds, 8 pseudobonds, 22240 residues, 2 models selected
> select add #26
411332 atoms, 419831 bonds, 14 pseudobonds, 51738 residues, 4 models selected
> hide #!27 models
> hide #!28 models
> hide #29 models
> hide #30 models
> hide #31 models
> hide #!32 models
> hide #!33 models
> hide #36 models
> hide #38 models
> hide #37 models
> hide #!39 models
> hide #!40 models
> hide #!41 models
> hide #!42 models
> hide #43 models
> select add #35
615326 atoms, 628295 bonds, 20 pseudobonds, 77424 residues, 6 models selected
> hide sel cartoons
> show sel atoms
> save
> C:/Users/dziemianowicz/Desktop/11-11-24_CR_NR_IRfit_(2023-11_15_mock_densityPrepModelling_bin4-on-
> bin2_structureFitting).cxs includeMaps true
> volume gaussian #3 bfactor 200
Opened ref_mock_CR_cut_resampled.mrc gaussian as #46, grid size 55,55,55,
pixel 13.3, shown at step 1, values float32
> close #46
> volume gaussian #3 bfactor 300
Opened ref_mock_CR_cut_resampled.mrc gaussian as #46, grid size 55,55,55,
pixel 13.3, shown at step 1, values float32
> volume #46 level 0.08015
> surface dust #9 size 133
> surface dust #10 size 133
> surface dust #46 size 133
> close #46
> volume gaussian #3 sDev 1
Opened ref_mock_CR_cut_resampled.mrc gaussian as #46, grid size 55,55,55,
pixel 13.3, shown at step 1, values float32
> volume gaussian #3 sDev 2
Opened ref_mock_CR_cut_resampled.mrc gaussian as #47, grid size 55,55,55,
pixel 13.3, shown at step 1, values float32
> hide #!46 models
> show #!46 models
> close #46
> close #47
> volume gaussian #3 sDev 5
Opened ref_mock_CR_cut_resampled.mrc gaussian as #46, grid size 55,55,55,
pixel 13.3, shown at step 1, values float32
> hide #!46 models
> show #!46 models
> volume gaussian #3 sDev 50
Opened ref_mock_CR_cut_resampled.mrc gaussian as #47, grid size 55,55,55,
pixel 13.3, shown at step 1, values float32
> close #47
> close #46
> volume gaussian #3 sDev 10
Opened ref_mock_CR_cut_resampled.mrc gaussian as #46, grid size 55,55,55,
pixel 13.3, shown at step 1, values float32
> close #46
> volume gaussian #3 sDev 6
Opened ref_mock_CR_cut_resampled.mrc gaussian as #46, grid size 55,55,55,
pixel 13.3, shown at step 1, values float32
> show #!3 models
> hide #!3 models
> show #!3 models
> color #46 #55ffffff models
> color #46 #ffff7fff models
> color #46 #ffaa00ff models
> color #46 #ffaa0096 models
> color #46 #ffaa000a models
> color #46 #ffaa0064 models
> color #46 #ffaa0001 models
> color #46 #ffaa0032 models
> close #46
> volume gaussian #3 sDev 8
Opened ref_mock_CR_cut_resampled.mrc gaussian as #46, grid size 55,55,55,
pixel 13.3, shown at step 1, values float32
> color #46 #ffffb264 models
> show #!3 models
> volume #46 level 0.07084
> volume gaussian #3 sDev 10
Opened ref_mock_CR_cut_resampled.mrc gaussian as #47, grid size 55,55,55,
pixel 13.3, shown at step 1, values float32
> volume #47 level 0.06448
> close #46
> volume gaussian #9 sDev 10
Opened ref_mock_IR_cut_resampled.mrc gaussian as #46, grid size 55,55,55,
pixel 13.3, shown at step 1, values float32
> volume gaussian #10 sDev 10
Opened ref_mock_NR_cut_resampled.mrc gaussian as #48, grid size 55,55,55,
pixel 13.3, shown at step 1, values float32
> volume #46 level 0.05083
> volume #46 level 0.04157
> surface dust #47 size 133
> surface dust #46 size 133
> surface dust #48 size 133
> volume #46 level 0.04311
> volume #47 level 0.05272
> volume #48 level 0.05081
> color #46 #b2b2ff78 models
> color #46 #b2b2ff64 models
> color #47 #b2ffff64 models
> color #48 #ffb2ff64 models
> save
> C:/Users/dziemianowicz/Desktop/11-11-24_CR_NR_IRfit_(2023-11_15_mock_densityPrepModelling_bin4-on-
> bin2_structureFitting).cxs includeMaps true
> show #!3 models
> hide #!3 models
> show #!5 models
> ui tool show "Side View"
> volume copy #46
Opened ref_mock_IR_cut_resampled.mrc gaussian copy as #49, grid size 55,55,55,
pixel 13.3, shown at step 1, values float32
> select add #49
615326 atoms, 628295 bonds, 20 pseudobonds, 77424 residues, 9 models selected
> select subtract #49
615326 atoms, 628295 bonds, 20 pseudobonds, 77424 residues, 6 models selected
> select subtract #45
438886 atoms, 448373 bonds, 12 pseudobonds, 55184 residues, 4 models selected
> select subtract #26
203994 atoms, 208464 bonds, 6 pseudobonds, 25686 residues, 2 models selected
> select subtract #35
Nothing selected
> volume copy #46
Opened ref_mock_IR_cut_resampled.mrc gaussian copy as #50, grid size 55,55,55,
pixel 13.3, shown at step 1, values float32
> select add #49
3 models selected
> ui mousemode right "translate selected models"
> view matrix models #49,1,0,0,225.55,0,1,0,-279.22,0,0,1,-0.6761
> view matrix models #49,1,0,0,238.31,0,1,0,-304.26,0,0,1,6.5092
> surface dust #49 size 133
> ui mousemode right "rotate selected models"
> view matrix models
> #49,0.77688,0.62858,0.036615,-230.05,-0.6287,0.77759,-0.0093915,752.13,-0.034375,-0.015724,0.99929,68.515
> ui mousemode right "translate selected models"
> view matrix models
> #49,0.77688,0.62858,0.036615,-259.7,-0.6287,0.77759,-0.0093915,723.22,-0.034375,-0.015724,0.99929,78.732
> fitmap #49 inMap #5
Fit map ref_mock_IR_cut_resampled.mrc gaussian copy in map full.mrc using 3462
points
correlation = 0.8889, correlation about mean = 0.00462, overlap = 20.97
steps = 116, shift = 127, angle = 6.48 degrees
Position of ref_mock_IR_cut_resampled.mrc gaussian copy (#49) relative to
full.mrc (#5) coordinates:
Matrix rotation and translation
0.70550852 0.70869239 0.00358169 -357.60587694
-0.70870090 0.70550522 0.00232854 854.60501545
-0.00087668 -0.00418115 0.99999088 5.96921865
Axis -0.00459265 0.00314542 -0.99998451
Axis point 849.50741605 857.61623799 0.00000000
Rotation angle (degrees) 45.12986090
Shift along axis -1.63867471
> select add #50
6 models selected
> select subtract #49
3 models selected
> view matrix models #50,1,0,0,-262.25,0,1,0,206.05,0,0,1,7.1832
> ui mousemode right "rotate selected models"
> view matrix models
> #50,0.70658,-0.70691,0.031969,866.48,0.7011,0.70546,0.10383,-396.66,-0.095952,-0.050951,0.99408,186.02
> fitmap #50 inMap #5
Fit map ref_mock_IR_cut_resampled.mrc gaussian copy in map full.mrc using 3462
points
correlation = 0.8889, correlation about mean = 0.004477, overlap = 20.97
steps = 64, shift = 51.6, angle = 6.07 degrees
Position of ref_mock_IR_cut_resampled.mrc gaussian copy (#50) relative to
full.mrc (#5) coordinates:
Matrix rotation and translation
0.70861778 -0.70558920 -0.00217119 853.48862446
0.70559157 0.70860833 0.00384344 -357.81118606
-0.00117337 -0.00425550 0.99999026 6.48701599
Axis -0.00573903 -0.00070707 0.99998328
Axis point 859.98658652 854.48359340 0.00000000
Rotation angle (degrees) 44.87821389
Shift along axis 1.84171065
> volume copy #47
Opened ref_mock_CR_cut_resampled.mrc gaussian copy as #51, grid size 55,55,55,
pixel 13.3, shown at step 1, values float32
> volume copy #47
Opened ref_mock_CR_cut_resampled.mrc gaussian copy as #52, grid size 55,55,55,
pixel 13.3, shown at step 1, values float32
> select subtract #50
Nothing selected
> surface dust #5 size 133
> surface dust #48 size 133
> surface dust #49 size 133
> surface dust #50 size 133
> surface dust #51 size 133
> surface dust #52 size 133
> select add #51
2 models selected
> ui mousemode right "translate selected models"
> view matrix models #51,1,0,0,120.31,0,1,0,-349.21,0,0,1,-1.1393
> ui mousemode right "rotate selected models"
> view matrix models
> #51,0.52537,0.85087,0.0021747,-302.86,-0.84726,0.52337,-0.090735,1246.9,-0.078342,0.045827,0.99587,40.508
> ui mousemode right "translate selected models"
> view matrix models
> #51,0.52537,0.85087,0.0021747,-321.39,-0.84726,0.52337,-0.090735,1299.5,-0.078342,0.045827,0.99587,45.525
> fitmap #51 inMap #5
Fit map ref_mock_CR_cut_resampled.mrc gaussian copy in map full.mrc using 3699
points
correlation = 0.9409, correlation about mean = 0.3122, overlap = 34.66
steps = 92, shift = 36.8, angle = 14.3 degrees
Position of ref_mock_CR_cut_resampled.mrc gaussian copy (#51) relative to
full.mrc (#5) coordinates:
Matrix rotation and translation
0.70678929 0.70741132 -0.00425730 -348.37979997
-0.70741894 0.70679436 -0.00042322 855.62484871
0.00270964 0.00331082 0.99999085 -6.98687029
Axis 0.00263917 -0.00492415 -0.99998439
Axis point 857.99902237 848.10516775 0.00000000
Rotation angle (degrees) 45.02588539
Shift along axis 1.85410375
> select add #52
5 models selected
> select add #51
6 models selected
> select subtract #51
3 models selected
> view matrix models #52,1,0,0,-333.75,0,1,0,174.49,0,0,1,4.7689
> ui mousemode right "rotate selected models"
> view matrix models
> #52,0.64704,-0.75606,0.098508,828,0.75487,0.65342,0.056773,-351.03,-0.10729,0.037626,0.99352,91.069
> ui mousemode right "translate selected models"
> view matrix models
> #52,0.64704,-0.75606,0.098508,889.37,0.75487,0.65342,0.056773,-382.21,-0.10729,0.037626,0.99352,100.35
> fitmap #52 inMap #5
Fit map ref_mock_CR_cut_resampled.mrc gaussian copy in map full.mrc using 3699
points
correlation = 0.9409, correlation about mean = 0.3121, overlap = 34.67
steps = 68, shift = 30.9, angle = 7.92 degrees
Position of ref_mock_CR_cut_resampled.mrc gaussian copy (#52) relative to
full.mrc (#5) coordinates:
Matrix rotation and translation
0.70759066 -0.70662257 -0.00001643 852.43489581
0.70661650 0.70758468 -0.00412730 -348.50228049
0.00292807 0.00290882 0.99999149 -6.85052316
Axis 0.00497865 -0.00208348 0.99998544
Axis point 847.32631572 855.73000143 0.00000000
Rotation angle (degrees) 44.96136608
Shift along axis -1.88035109
> select subtract #52
Nothing selected
> volume copy #48
Opened ref_mock_NR_cut_resampled.mrc gaussian copy as #53, grid size 55,55,55,
pixel 13.3, shown at step 1, values float32
> volume copy #48
Opened ref_mock_NR_cut_resampled.mrc gaussian copy as #54, grid size 55,55,55,
pixel 13.3, shown at step 1, values float32
> select add #53
2 models selected
> view matrix models #53,1,0,0,247.39,0,1,0,-183.51,0,0,1,2.0711
> ui mousemode right "rotate selected models"
> view matrix models
> #53,0.72492,0.68551,0.067626,-276.58,-0.68774,0.7258,0.014985,953.93,-0.038811,-0.057372,0.9976,117.84
> fitmap #53 inMap #5
Fit map ref_mock_NR_cut_resampled.mrc gaussian copy in map full.mrc using 2251
points
correlation = 0.8907, correlation about mean = 0.02911, overlap = 16.11
steps = 136, shift = 195, angle = 5.37 degrees
Position of ref_mock_NR_cut_resampled.mrc gaussian copy (#53) relative to
full.mrc (#5) coordinates:
Matrix rotation and translation
0.70726376 0.70665125 -0.02054196 -340.84439901
-0.70682445 0.70738689 -0.00172767 854.03819626
0.01331026 0.01574148 0.99978750 -34.91446106
Axis 0.01235451 -0.02394094 -0.99963703
Axis point 861.17957803 839.26749878 0.00000000
Rotation angle (degrees) 44.99090015
Shift along axis 10.24434522
> select add #54
5 models selected
> select add #53
6 models selected
> select subtract #53
3 models selected
> ui mousemode right "translate selected models"
> view matrix models #54,1,0,0,-422.31,0,1,0,164.27,0,0,1,0.86927
> ui mousemode right "rotate selected models"
> view matrix models
> #54,0.60972,-0.79251,-0.013128,987.24,0.79237,0.60902,0.035208,-353.39,-0.019907,-0.031869,0.99929,62.74
> ui mousemode right "translate selected models"
> view matrix models
> #54,0.60972,-0.79251,-0.013128,1068.9,0.79237,0.60902,0.035208,-334.42,-0.019907,-0.031869,0.99929,68.476
> fitmap #54 inMap #5
Fit map ref_mock_NR_cut_resampled.mrc gaussian copy in map full.mrc using 2251
points
correlation = 0.8908, correlation about mean = 0.02941, overlap = 16.11
steps = 64, shift = 28.1, angle = 8.14 degrees
Position of ref_mock_NR_cut_resampled.mrc gaussian copy (#54) relative to
full.mrc (#5) coordinates:
Matrix rotation and translation
0.70693125 -0.70728051 0.00157900 853.82392986
0.70715176 0.70675615 -0.02078785 -340.67760789
0.01358687 0.01581217 0.99978266 -35.28135486
Axis 0.02586653 -0.00848639 0.99962938
Axis point 838.55495285 860.10554862 0.00000000
Rotation angle (degrees) 45.03011430
Shift along axis -10.29169189
> hide #!5 models
> select subtract #54
Nothing selected
> show #!48 models
> show #!47 models
> show #!46 models
> ui mousemode right select
> surface dust #47 size 133
> surface dust #46 size 133
> surface dust #48 size 133
> surface dust #49 size 133
> surface dust #50 size 133
> surface dust #51 size 133
> surface dust #52 size 133
> surface dust #53 size 133
> surface dust #54 size 133
> save
> C:/Users/dziemianowicz/Desktop/11-11-24_CR_NR_IRfit_(2023-11_15_mock_densityPrepModelling_bin4-on-
> bin2_structureFitting).cxs includeMaps true
——— End of log from Mon Nov 11 13:29:20 2024 ———
opened ChimeraX session
> open /g/kosinski/kosinski/Flu/NPC/daniel_dir_from_agnieszka/PDBs_fit/*
Chain information for Nup133_propeller_CRinner.pdb #55
---
Chain | Description
K | No description available
R | No description available
S | No description available
Chain information for Nup133_propeller_CRouter.pdb #56
---
Chain | Description
K | No description available
R | No description available
S | No description available
Chain information for Nup133_propeller_NRinner.pdb #57
---
Chain | Description
K | No description available
R | No description available
S | No description available
T | No description available
Chain information for Nup133_propeller_NRouter.pdb #58
---
Chain | Description
K | No description available
R | No description available
S | No description available
T | No description available
Chain information for Nup98_CRconnector.pdb #59
---
Chain | Description
U | No description available
Chain information for Nup98_NRconnector.pdb #60
---
Chain | Description
U | No description available
Chain information for Y_CRinner.pdb #61
---
Chain | Description
A | No description available
C | No description available
K | No description available
L | No description available
M | No description available
N | No description available
O | No description available
P | No description available
Q | No description available
R | No description available
S | No description available
Chain information for Y_CRouter.pdb #62
---
Chain | Description
A | No description available
C | No description available
J | No description available
K | No description available
L | No description available
M | No description available
N | No description available
O | No description available
P | No description available
Q | No description available
R | No description available
S | No description available
U | No description available
V | No description available
W | No description available
Chain information for Y_NRinner.pdb #63
---
Chain | Description
K | No description available
L | No description available
M | No description available
N | No description available
O | No description available
P | No description available
Q | No description available
R | No description available
S | No description available
T | No description available
Chain information for Y_NRouter.pdb #64
---
Chain | Description
A | No description available
C | No description available
K | No description available
L | No description available
M | No description available
N | No description available
O | No description available
P | No description available
Q | No description available
R | No description available
S | No description available
T | No description available
Chain information for hNup155_CRconnector_CTD.pdb #65
---
Chain | Description
D | No description available
Chain information for hNup155_CRconnector_NTD.pdb #66
---
Chain | Description
D | No description available
Chain information for hNup155_NRconnector_CTD.pdb #67
---
Chain | Description
D | No description available
Chain information for hNup155_NRconnector_NTD.pdb #68
---
Chain | Description
D | No description available
Chain information for hNup358_1_CRinner.pdb #69
---
Chain | Description
0 | No description available
Chain information for hNup358_1_CRouter.pdb #70
---
Chain | Description
0 | No description available
Chain information for hNup358_2_CRinner.pdb #71
---
Chain | Description
0 | No description available
Chain information for hNup358_2_CRouter.pdb #72
---
Chain | Description
0 | No description available
Chain information for hNup358_CRmiddle.pdb #73
---
Chain | Description
0 | No description available
Chain information for hNup53_dimer_IRcyt_innerF7.pdb #74
---
Chain | Description
F | No description available
Chain information for hNup53_dimer_IRcyt_outerG7.pdb #75
---
Chain | Description
F | No description available
Chain information for hNup53_dimer_IRnuc_innerF0.pdb #76
---
Chain | Description
F | No description available
Chain information for hNup53_dimer_IRnuc_outerG0.pdb #77
---
Chain | Description
F | No description available
Chain information for hNups_IRcyt_inner.pdb #78
---
Chain | Description
4 | No description available
A | No description available
C | No description available
D | No description available
E | No description available
F | No description available
H | No description available
I | No description available
J | No description available
U | No description available
Chain information for hNups_IRcyt_outer.pdb #79
---
Chain | Description
A | No description available
B | No description available
D | No description available
F | No description available
H | No description available
I | No description available
J | No description available
U | No description available
Chain information for hNups_IRnuc_inner.pdb #80
---
Chain | Description
4 | No description available
A | No description available
C | No description available
D | No description available
E | No description available
F | No description available
H | No description available
I | No description available
J | No description available
U | No description available
Chain information for hNups_IRnuc_outer.pdb #81
---
Chain | Description
A | No description available
B | No description available
D | No description available
F | No description available
H | No description available
I | No description available
J | No description available
U | No description available
> hide #55-60,69-77#!26,35,45,61-68,78-81 atoms
> show #55-60,69-77#!26,35,45,61-68,78-81 cartoons
> view
> hide #!26 models
> hide #!35 models
> hide #!45 models
> select #556-81
Nothing selected
> select #55-81
615326 atoms, 628295 bonds, 20 pseudobonds, 77424 residues, 39 models selected
> ui mousemode right "translate selected models"
> view matrix models
> #55,1,0,0,687.18,0,1,0,32.494,0,0,1,27.066,#56,1,0,0,687.18,0,1,0,32.494,0,0,1,27.066,#57,1,0,0,687.18,0,1,0,32.494,0,0,1,27.066,#58,1,0,0,687.18,0,1,0,32.494,0,0,1,27.066,#59,1,0,0,687.18,0,1,0,32.494,0,0,1,27.066,#60,1,0,0,687.18,0,1,0,32.494,0,0,1,27.066,#61,1,0,0,687.18,0,1,0,32.494,0,0,1,27.066,#62,1,0,0,687.18,0,1,0,32.494,0,0,1,27.066,#63,1,0,0,687.18,0,1,0,32.494,0,0,1,27.066,#64,1,0,0,687.18,0,1,0,32.494,0,0,1,27.066,#65,1,0,0,687.18,0,1,0,32.494,0,0,1,27.066,#66,1,0,0,687.18,0,1,0,32.494,0,0,1,27.066,#67,1,0,0,687.18,0,1,0,32.494,0,0,1,27.066,#68,1,0,0,687.18,0,1,0,32.494,0,0,1,27.066,#69,1,0,0,687.18,0,1,0,32.494,0,0,1,27.066,#70,1,0,0,687.18,0,1,0,32.494,0,0,1,27.066,#71,1,0,0,687.18,0,1,0,32.494,0,0,1,27.066,#72,1,0,0,687.18,0,1,0,32.494,0,0,1,27.066,#73,1,0,0,687.18,0,1,0,32.494,0,0,1,27.066,#74,1,0,0,687.18,0,1,0,32.494,0,0,1,27.066,#75,1,0,0,687.18,0,1,0,32.494,0,0,1,27.066,#76,1,0,0,687.18,0,1,0,32.494,0,0,1,27.066,#77,1,0,0,687.18,0,1,0,32.494,0,0,1,27.066,#78,1,0,0,687.18,0,1,0,32.494,0,0,1,27.066,#79,1,0,0,687.18,0,1,0,32.494,0,0,1,27.066,#80,1,0,0,687.18,0,1,0,32.494,0,0,1,27.066,#81,1,0,0,687.18,0,1,0,32.494,0,0,1,27.066
> view matrix models
> #55,1,0,0,419.83,0,1,0,-47.144,0,0,1,58.233,#56,1,0,0,419.83,0,1,0,-47.144,0,0,1,58.233,#57,1,0,0,419.83,0,1,0,-47.144,0,0,1,58.233,#58,1,0,0,419.83,0,1,0,-47.144,0,0,1,58.233,#59,1,0,0,419.83,0,1,0,-47.144,0,0,1,58.233,#60,1,0,0,419.83,0,1,0,-47.144,0,0,1,58.233,#61,1,0,0,419.83,0,1,0,-47.144,0,0,1,58.233,#62,1,0,0,419.83,0,1,0,-47.144,0,0,1,58.233,#63,1,0,0,419.83,0,1,0,-47.144,0,0,1,58.233,#64,1,0,0,419.83,0,1,0,-47.144,0,0,1,58.233,#65,1,0,0,419.83,0,1,0,-47.144,0,0,1,58.233,#66,1,0,0,419.83,0,1,0,-47.144,0,0,1,58.233,#67,1,0,0,419.83,0,1,0,-47.144,0,0,1,58.233,#68,1,0,0,419.83,0,1,0,-47.144,0,0,1,58.233,#69,1,0,0,419.83,0,1,0,-47.144,0,0,1,58.233,#70,1,0,0,419.83,0,1,0,-47.144,0,0,1,58.233,#71,1,0,0,419.83,0,1,0,-47.144,0,0,1,58.233,#72,1,0,0,419.83,0,1,0,-47.144,0,0,1,58.233,#73,1,0,0,419.83,0,1,0,-47.144,0,0,1,58.233,#74,1,0,0,419.83,0,1,0,-47.144,0,0,1,58.233,#75,1,0,0,419.83,0,1,0,-47.144,0,0,1,58.233,#76,1,0,0,419.83,0,1,0,-47.144,0,0,1,58.233,#77,1,0,0,419.83,0,1,0,-47.144,0,0,1,58.233,#78,1,0,0,419.83,0,1,0,-47.144,0,0,1,58.233,#79,1,0,0,419.83,0,1,0,-47.144,0,0,1,58.233,#80,1,0,0,419.83,0,1,0,-47.144,0,0,1,58.233,#81,1,0,0,419.83,0,1,0,-47.144,0,0,1,58.233
> select clear
> select #55-81
615326 atoms, 628295 bonds, 20 pseudobonds, 77424 residues, 39 models selected
> select clear
> select #55-81
615326 atoms, 628295 bonds, 20 pseudobonds, 77424 residues, 39 models selected
> view matrix models
> #55,-0.50558,0.83568,-0.21455,409.05,-0.8607,-0.47124,0.1927,1352.7,0.05993,0.28209,0.95751,-168.72,#56,-0.50558,0.83568,-0.21455,409.05,-0.8607,-0.47124,0.1927,1352.7,0.05993,0.28209,0.95751,-168.72,#57,-0.50558,0.83568,-0.21455,409.05,-0.8607,-0.47124,0.1927,1352.7,0.05993,0.28209,0.95751,-168.72,#58,-0.50558,0.83568,-0.21455,409.05,-0.8607,-0.47124,0.1927,1352.7,0.05993,0.28209,0.95751,-168.72,#59,-0.50558,0.83568,-0.21455,409.05,-0.8607,-0.47124,0.1927,1352.7,0.05993,0.28209,0.95751,-168.72,#60,-0.50558,0.83568,-0.21455,409.05,-0.8607,-0.47124,0.1927,1352.7,0.05993,0.28209,0.95751,-168.72,#61,-0.50558,0.83568,-0.21455,409.05,-0.8607,-0.47124,0.1927,1352.7,0.05993,0.28209,0.95751,-168.72,#62,-0.50558,0.83568,-0.21455,409.05,-0.8607,-0.47124,0.1927,1352.7,0.05993,0.28209,0.95751,-168.72,#63,-0.50558,0.83568,-0.21455,409.05,-0.8607,-0.47124,0.1927,1352.7,0.05993,0.28209,0.95751,-168.72,#64,-0.50558,0.83568,-0.21455,409.05,-0.8607,-0.47124,0.1927,1352.7,0.05993,0.28209,0.95751,-168.72,#65,-0.50558,0.83568,-0.21455,409.05,-0.8607,-0.47124,0.1927,1352.7,0.05993,0.28209,0.95751,-168.72,#66,-0.50558,0.83568,-0.21455,409.05,-0.8607,-0.47124,0.1927,1352.7,0.05993,0.28209,0.95751,-168.72,#67,-0.50558,0.83568,-0.21455,409.05,-0.8607,-0.47124,0.1927,1352.7,0.05993,0.28209,0.95751,-168.72,#68,-0.50558,0.83568,-0.21455,409.05,-0.8607,-0.47124,0.1927,1352.7,0.05993,0.28209,0.95751,-168.72,#69,-0.50558,0.83568,-0.21455,409.05,-0.8607,-0.47124,0.1927,1352.7,0.05993,0.28209,0.95751,-168.72,#70,-0.50558,0.83568,-0.21455,409.05,-0.8607,-0.47124,0.1927,1352.7,0.05993,0.28209,0.95751,-168.72,#71,-0.50558,0.83568,-0.21455,409.05,-0.8607,-0.47124,0.1927,1352.7,0.05993,0.28209,0.95751,-168.72,#72,-0.50558,0.83568,-0.21455,409.05,-0.8607,-0.47124,0.1927,1352.7,0.05993,0.28209,0.95751,-168.72,#73,-0.50558,0.83568,-0.21455,409.05,-0.8607,-0.47124,0.1927,1352.7,0.05993,0.28209,0.95751,-168.72,#74,-0.50558,0.83568,-0.21455,409.05,-0.8607,-0.47124,0.1927,1352.7,0.05993,0.28209,0.95751,-168.72,#75,-0.50558,0.83568,-0.21455,409.05,-0.8607,-0.47124,0.1927,1352.7,0.05993,0.28209,0.95751,-168.72,#76,-0.50558,0.83568,-0.21455,409.05,-0.8607,-0.47124,0.1927,1352.7,0.05993,0.28209,0.95751,-168.72,#77,-0.50558,0.83568,-0.21455,409.05,-0.8607,-0.47124,0.1927,1352.7,0.05993,0.28209,0.95751,-168.72,#78,-0.50558,0.83568,-0.21455,409.05,-0.8607,-0.47124,0.1927,1352.7,0.05993,0.28209,0.95751,-168.72,#79,-0.50558,0.83568,-0.21455,409.05,-0.8607,-0.47124,0.1927,1352.7,0.05993,0.28209,0.95751,-168.72,#80,-0.50558,0.83568,-0.21455,409.05,-0.8607,-0.47124,0.1927,1352.7,0.05993,0.28209,0.95751,-168.72,#81,-0.50558,0.83568,-0.21455,409.05,-0.8607,-0.47124,0.1927,1352.7,0.05993,0.28209,0.95751,-168.72
> view matrix models
> #55,-0.50826,0.82999,-0.22976,427.91,-0.85883,-0.46868,0.20678,1337.7,0.063942,0.30242,0.95103,-182.36,#56,-0.50826,0.82999,-0.22976,427.91,-0.85883,-0.46868,0.20678,1337.7,0.063942,0.30242,0.95103,-182.36,#57,-0.50826,0.82999,-0.22976,427.91,-0.85883,-0.46868,0.20678,1337.7,0.063942,0.30242,0.95103,-182.36,#58,-0.50826,0.82999,-0.22976,427.91,-0.85883,-0.46868,0.20678,1337.7,0.063942,0.30242,0.95103,-182.36,#59,-0.50826,0.82999,-0.22976,427.91,-0.85883,-0.46868,0.20678,1337.7,0.063942,0.30242,0.95103,-182.36,#60,-0.50826,0.82999,-0.22976,427.91,-0.85883,-0.46868,0.20678,1337.7,0.063942,0.30242,0.95103,-182.36,#61,-0.50826,0.82999,-0.22976,427.91,-0.85883,-0.46868,0.20678,1337.7,0.063942,0.30242,0.95103,-182.36,#62,-0.50826,0.82999,-0.22976,427.91,-0.85883,-0.46868,0.20678,1337.7,0.063942,0.30242,0.95103,-182.36,#63,-0.50826,0.82999,-0.22976,427.91,-0.85883,-0.46868,0.20678,1337.7,0.063942,0.30242,0.95103,-182.36,#64,-0.50826,0.82999,-0.22976,427.91,-0.85883,-0.46868,0.20678,1337.7,0.063942,0.30242,0.95103,-182.36,#65,-0.50826,0.82999,-0.22976,427.91,-0.85883,-0.46868,0.20678,1337.7,0.063942,0.30242,0.95103,-182.36,#66,-0.50826,0.82999,-0.22976,427.91,-0.85883,-0.46868,0.20678,1337.7,0.063942,0.30242,0.95103,-182.36,#67,-0.50826,0.82999,-0.22976,427.91,-0.85883,-0.46868,0.20678,1337.7,0.063942,0.30242,0.95103,-182.36,#68,-0.50826,0.82999,-0.22976,427.91,-0.85883,-0.46868,0.20678,1337.7,0.063942,0.30242,0.95103,-182.36,#69,-0.50826,0.82999,-0.22976,427.91,-0.85883,-0.46868,0.20678,1337.7,0.063942,0.30242,0.95103,-182.36,#70,-0.50826,0.82999,-0.22976,427.91,-0.85883,-0.46868,0.20678,1337.7,0.063942,0.30242,0.95103,-182.36,#71,-0.50826,0.82999,-0.22976,427.91,-0.85883,-0.46868,0.20678,1337.7,0.063942,0.30242,0.95103,-182.36,#72,-0.50826,0.82999,-0.22976,427.91,-0.85883,-0.46868,0.20678,1337.7,0.063942,0.30242,0.95103,-182.36,#73,-0.50826,0.82999,-0.22976,427.91,-0.85883,-0.46868,0.20678,1337.7,0.063942,0.30242,0.95103,-182.36,#74,-0.50826,0.82999,-0.22976,427.91,-0.85883,-0.46868,0.20678,1337.7,0.063942,0.30242,0.95103,-182.36,#75,-0.50826,0.82999,-0.22976,427.91,-0.85883,-0.46868,0.20678,1337.7,0.063942,0.30242,0.95103,-182.36,#76,-0.50826,0.82999,-0.22976,427.91,-0.85883,-0.46868,0.20678,1337.7,0.063942,0.30242,0.95103,-182.36,#77,-0.50826,0.82999,-0.22976,427.91,-0.85883,-0.46868,0.20678,1337.7,0.063942,0.30242,0.95103,-182.36,#78,-0.50826,0.82999,-0.22976,427.91,-0.85883,-0.46868,0.20678,1337.7,0.063942,0.30242,0.95103,-182.36,#79,-0.50826,0.82999,-0.22976,427.91,-0.85883,-0.46868,0.20678,1337.7,0.063942,0.30242,0.95103,-182.36,#80,-0.50826,0.82999,-0.22976,427.91,-0.85883,-0.46868,0.20678,1337.7,0.063942,0.30242,0.95103,-182.36,#81,-0.50826,0.82999,-0.22976,427.91,-0.85883,-0.46868,0.20678,1337.7,0.063942,0.30242,0.95103,-182.36
> view matrix models
> #55,-0.50826,0.82999,-0.22976,808.38,-0.85883,-0.46868,0.20678,1731.7,0.063942,0.30242,0.95103,-217.81,#56,-0.50826,0.82999,-0.22976,808.38,-0.85883,-0.46868,0.20678,1731.7,0.063942,0.30242,0.95103,-217.81,#57,-0.50826,0.82999,-0.22976,808.38,-0.85883,-0.46868,0.20678,1731.7,0.063942,0.30242,0.95103,-217.81,#58,-0.50826,0.82999,-0.22976,808.38,-0.85883,-0.46868,0.20678,1731.7,0.063942,0.30242,0.95103,-217.81,#59,-0.50826,0.82999,-0.22976,808.38,-0.85883,-0.46868,0.20678,1731.7,0.063942,0.30242,0.95103,-217.81,#60,-0.50826,0.82999,-0.22976,808.38,-0.85883,-0.46868,0.20678,1731.7,0.063942,0.30242,0.95103,-217.81,#61,-0.50826,0.82999,-0.22976,808.38,-0.85883,-0.46868,0.20678,1731.7,0.063942,0.30242,0.95103,-217.81,#62,-0.50826,0.82999,-0.22976,808.38,-0.85883,-0.46868,0.20678,1731.7,0.063942,0.30242,0.95103,-217.81,#63,-0.50826,0.82999,-0.22976,808.38,-0.85883,-0.46868,0.20678,1731.7,0.063942,0.30242,0.95103,-217.81,#64,-0.50826,0.82999,-0.22976,808.38,-0.85883,-0.46868,0.20678,1731.7,0.063942,0.30242,0.95103,-217.81,#65,-0.50826,0.82999,-0.22976,808.38,-0.85883,-0.46868,0.20678,1731.7,0.063942,0.30242,0.95103,-217.81,#66,-0.50826,0.82999,-0.22976,808.38,-0.85883,-0.46868,0.20678,1731.7,0.063942,0.30242,0.95103,-217.81,#67,-0.50826,0.82999,-0.22976,808.38,-0.85883,-0.46868,0.20678,1731.7,0.063942,0.30242,0.95103,-217.81,#68,-0.50826,0.82999,-0.22976,808.38,-0.85883,-0.46868,0.20678,1731.7,0.063942,0.30242,0.95103,-217.81,#69,-0.50826,0.82999,-0.22976,808.38,-0.85883,-0.46868,0.20678,1731.7,0.063942,0.30242,0.95103,-217.81,#70,-0.50826,0.82999,-0.22976,808.38,-0.85883,-0.46868,0.20678,1731.7,0.063942,0.30242,0.95103,-217.81,#71,-0.50826,0.82999,-0.22976,808.38,-0.85883,-0.46868,0.20678,1731.7,0.063942,0.30242,0.95103,-217.81,#72,-0.50826,0.82999,-0.22976,808.38,-0.85883,-0.46868,0.20678,1731.7,0.063942,0.30242,0.95103,-217.81,#73,-0.50826,0.82999,-0.22976,808.38,-0.85883,-0.46868,0.20678,1731.7,0.063942,0.30242,0.95103,-217.81,#74,-0.50826,0.82999,-0.22976,808.38,-0.85883,-0.46868,0.20678,1731.7,0.063942,0.30242,0.95103,-217.81,#75,-0.50826,0.82999,-0.22976,808.38,-0.85883,-0.46868,0.20678,1731.7,0.063942,0.30242,0.95103,-217.81,#76,-0.50826,0.82999,-0.22976,808.38,-0.85883,-0.46868,0.20678,1731.7,0.063942,0.30242,0.95103,-217.81,#77,-0.50826,0.82999,-0.22976,808.38,-0.85883,-0.46868,0.20678,1731.7,0.063942,0.30242,0.95103,-217.81,#78,-0.50826,0.82999,-0.22976,808.38,-0.85883,-0.46868,0.20678,1731.7,0.063942,0.30242,0.95103,-217.81,#79,-0.50826,0.82999,-0.22976,808.38,-0.85883,-0.46868,0.20678,1731.7,0.063942,0.30242,0.95103,-217.81,#80,-0.50826,0.82999,-0.22976,808.38,-0.85883,-0.46868,0.20678,1731.7,0.063942,0.30242,0.95103,-217.81,#81,-0.50826,0.82999,-0.22976,808.38,-0.85883,-0.46868,0.20678,1731.7,0.063942,0.30242,0.95103,-217.81
> view matrix models
> #55,-0.38562,0.92178,-0.040132,525.92,-0.92153,-0.38693,-0.032612,1889.3,-0.04559,0.024407,0.99866,18.7,#56,-0.38562,0.92178,-0.040132,525.92,-0.92153,-0.38693,-0.032612,1889.3,-0.04559,0.024407,0.99866,18.7,#57,-0.38562,0.92178,-0.040132,525.92,-0.92153,-0.38693,-0.032612,1889.3,-0.04559,0.024407,0.99866,18.7,#58,-0.38562,0.92178,-0.040132,525.92,-0.92153,-0.38693,-0.032612,1889.3,-0.04559,0.024407,0.99866,18.7,#59,-0.38562,0.92178,-0.040132,525.92,-0.92153,-0.38693,-0.032612,1889.3,-0.04559,0.024407,0.99866,18.7,#60,-0.38562,0.92178,-0.040132,525.92,-0.92153,-0.38693,-0.032612,1889.3,-0.04559,0.024407,0.99866,18.7,#61,-0.38562,0.92178,-0.040132,525.92,-0.92153,-0.38693,-0.032612,1889.3,-0.04559,0.024407,0.99866,18.7,#62,-0.38562,0.92178,-0.040132,525.92,-0.92153,-0.38693,-0.032612,1889.3,-0.04559,0.024407,0.99866,18.7,#63,-0.38562,0.92178,-0.040132,525.92,-0.92153,-0.38693,-0.032612,1889.3,-0.04559,0.024407,0.99866,18.7,#64,-0.38562,0.92178,-0.040132,525.92,-0.92153,-0.38693,-0.032612,1889.3,-0.04559,0.024407,0.99866,18.7,#65,-0.38562,0.92178,-0.040132,525.92,-0.92153,-0.38693,-0.032612,1889.3,-0.04559,0.024407,0.99866,18.7,#66,-0.38562,0.92178,-0.040132,525.92,-0.92153,-0.38693,-0.032612,1889.3,-0.04559,0.024407,0.99866,18.7,#67,-0.38562,0.92178,-0.040132,525.92,-0.92153,-0.38693,-0.032612,1889.3,-0.04559,0.024407,0.99866,18.7,#68,-0.38562,0.92178,-0.040132,525.92,-0.92153,-0.38693,-0.032612,1889.3,-0.04559,0.024407,0.99866,18.7,#69,-0.38562,0.92178,-0.040132,525.92,-0.92153,-0.38693,-0.032612,1889.3,-0.04559,0.024407,0.99866,18.7,#70,-0.38562,0.92178,-0.040132,525.92,-0.92153,-0.38693,-0.032612,1889.3,-0.04559,0.024407,0.99866,18.7,#71,-0.38562,0.92178,-0.040132,525.92,-0.92153,-0.38693,-0.032612,1889.3,-0.04559,0.024407,0.99866,18.7,#72,-0.38562,0.92178,-0.040132,525.92,-0.92153,-0.38693,-0.032612,1889.3,-0.04559,0.024407,0.99866,18.7,#73,-0.38562,0.92178,-0.040132,525.92,-0.92153,-0.38693,-0.032612,1889.3,-0.04559,0.024407,0.99866,18.7,#74,-0.38562,0.92178,-0.040132,525.92,-0.92153,-0.38693,-0.032612,1889.3,-0.04559,0.024407,0.99866,18.7,#75,-0.38562,0.92178,-0.040132,525.92,-0.92153,-0.38693,-0.032612,1889.3,-0.04559,0.024407,0.99866,18.7,#76,-0.38562,0.92178,-0.040132,525.92,-0.92153,-0.38693,-0.032612,1889.3,-0.04559,0.024407,0.99866,18.7,#77,-0.38562,0.92178,-0.040132,525.92,-0.92153,-0.38693,-0.032612,1889.3,-0.04559,0.024407,0.99866,18.7,#78,-0.38562,0.92178,-0.040132,525.92,-0.92153,-0.38693,-0.032612,1889.3,-0.04559,0.024407,0.99866,18.7,#79,-0.38562,0.92178,-0.040132,525.92,-0.92153,-0.38693,-0.032612,1889.3,-0.04559,0.024407,0.99866,18.7,#80,-0.38562,0.92178,-0.040132,525.92,-0.92153,-0.38693,-0.032612,1889.3,-0.04559,0.024407,0.99866,18.7,#81,-0.38562,0.92178,-0.040132,525.92,-0.92153,-0.38693,-0.032612,1889.3,-0.04559,0.024407,0.99866,18.7
> view matrix models
> #55,-0.39601,0.91677,-0.052019,544.42,-0.91492,-0.39876,-0.062565,1922.9,-0.078101,0.022817,0.99668,33.44,#56,-0.39601,0.91677,-0.052019,544.42,-0.91492,-0.39876,-0.062565,1922.9,-0.078101,0.022817,0.99668,33.44,#57,-0.39601,0.91677,-0.052019,544.42,-0.91492,-0.39876,-0.062565,1922.9,-0.078101,0.022817,0.99668,33.44,#58,-0.39601,0.91677,-0.052019,544.42,-0.91492,-0.39876,-0.062565,1922.9,-0.078101,0.022817,0.99668,33.44,#59,-0.39601,0.91677,-0.052019,544.42,-0.91492,-0.39876,-0.062565,1922.9,-0.078101,0.022817,0.99668,33.44,#60,-0.39601,0.91677,-0.052019,544.42,-0.91492,-0.39876,-0.062565,1922.9,-0.078101,0.022817,0.99668,33.44,#61,-0.39601,0.91677,-0.052019,544.42,-0.91492,-0.39876,-0.062565,1922.9,-0.078101,0.022817,0.99668,33.44,#62,-0.39601,0.91677,-0.052019,544.42,-0.91492,-0.39876,-0.062565,1922.9,-0.078101,0.022817,0.99668,33.44,#63,-0.39601,0.91677,-0.052019,544.42,-0.91492,-0.39876,-0.062565,1922.9,-0.078101,0.022817,0.99668,33.44,#64,-0.39601,0.91677,-0.052019,544.42,-0.91492,-0.39876,-0.062565,1922.9,-0.078101,0.022817,0.99668,33.44,#65,-0.39601,0.91677,-0.052019,544.42,-0.91492,-0.39876,-0.062565,1922.9,-0.078101,0.022817,0.99668,33.44,#66,-0.39601,0.91677,-0.052019,544.42,-0.91492,-0.39876,-0.062565,1922.9,-0.078101,0.022817,0.99668,33.44,#67,-0.39601,0.91677,-0.052019,544.42,-0.91492,-0.39876,-0.062565,1922.9,-0.078101,0.022817,0.99668,33.44,#68,-0.39601,0.91677,-0.052019,544.42,-0.91492,-0.39876,-0.062565,1922.9,-0.078101,0.022817,0.99668,33.44,#69,-0.39601,0.91677,-0.052019,544.42,-0.91492,-0.39876,-0.062565,1922.9,-0.078101,0.022817,0.99668,33.44,#70,-0.39601,0.91677,-0.052019,544.42,-0.91492,-0.39876,-0.062565,1922.9,-0.078101,0.022817,0.99668,33.44,#71,-0.39601,0.91677,-0.052019,544.42,-0.91492,-0.39876,-0.062565,1922.9,-0.078101,0.022817,0.99668,33.44,#72,-0.39601,0.91677,-0.052019,544.42,-0.91492,-0.39876,-0.062565,1922.9,-0.078101,0.022817,0.99668,33.44,#73,-0.39601,0.91677,-0.052019,544.42,-0.91492,-0.39876,-0.062565,1922.9,-0.078101,0.022817,0.99668,33.44,#74,-0.39601,0.91677,-0.052019,544.42,-0.91492,-0.39876,-0.062565,1922.9,-0.078101,0.022817,0.99668,33.44,#75,-0.39601,0.91677,-0.052019,544.42,-0.91492,-0.39876,-0.062565,1922.9,-0.078101,0.022817,0.99668,33.44,#76,-0.39601,0.91677,-0.052019,544.42,-0.91492,-0.39876,-0.062565,1922.9,-0.078101,0.022817,0.99668,33.44,#77,-0.39601,0.91677,-0.052019,544.42,-0.91492,-0.39876,-0.062565,1922.9,-0.078101,0.022817,0.99668,33.44,#78,-0.39601,0.91677,-0.052019,544.42,-0.91492,-0.39876,-0.062565,1922.9,-0.078101,0.022817,0.99668,33.44,#79,-0.39601,0.91677,-0.052019,544.42,-0.91492,-0.39876,-0.062565,1922.9,-0.078101,0.022817,0.99668,33.44,#80,-0.39601,0.91677,-0.052019,544.42,-0.91492,-0.39876,-0.062565,1922.9,-0.078101,0.022817,0.99668,33.44,#81,-0.39601,0.91677,-0.052019,544.42,-0.91492,-0.39876,-0.062565,1922.9,-0.078101,0.022817,0.99668,33.44
> view matrix models
> #55,-0.39601,0.91677,-0.052019,577.31,-0.91492,-0.39876,-0.062565,1900.9,-0.078101,0.022817,0.99668,-2.6266,#56,-0.39601,0.91677,-0.052019,577.31,-0.91492,-0.39876,-0.062565,1900.9,-0.078101,0.022817,0.99668,-2.6266,#57,-0.39601,0.91677,-0.052019,577.31,-0.91492,-0.39876,-0.062565,1900.9,-0.078101,0.022817,0.99668,-2.6266,#58,-0.39601,0.91677,-0.052019,577.31,-0.91492,-0.39876,-0.062565,1900.9,-0.078101,0.022817,0.99668,-2.6266,#59,-0.39601,0.91677,-0.052019,577.31,-0.91492,-0.39876,-0.062565,1900.9,-0.078101,0.022817,0.99668,-2.6266,#60,-0.39601,0.91677,-0.052019,577.31,-0.91492,-0.39876,-0.062565,1900.9,-0.078101,0.022817,0.99668,-2.6266,#61,-0.39601,0.91677,-0.052019,577.31,-0.91492,-0.39876,-0.062565,1900.9,-0.078101,0.022817,0.99668,-2.6266,#62,-0.39601,0.91677,-0.052019,577.31,-0.91492,-0.39876,-0.062565,1900.9,-0.078101,0.022817,0.99668,-2.6266,#63,-0.39601,0.91677,-0.052019,577.31,-0.91492,-0.39876,-0.062565,1900.9,-0.078101,0.022817,0.99668,-2.6266,#64,-0.39601,0.91677,-0.052019,577.31,-0.91492,-0.39876,-0.062565,1900.9,-0.078101,0.022817,0.99668,-2.6266,#65,-0.39601,0.91677,-0.052019,577.31,-0.91492,-0.39876,-0.062565,1900.9,-0.078101,0.022817,0.99668,-2.6266,#66,-0.39601,0.91677,-0.052019,577.31,-0.91492,-0.39876,-0.062565,1900.9,-0.078101,0.022817,0.99668,-2.6266,#67,-0.39601,0.91677,-0.052019,577.31,-0.91492,-0.39876,-0.062565,1900.9,-0.078101,0.022817,0.99668,-2.6266,#68,-0.39601,0.91677,-0.052019,577.31,-0.91492,-0.39876,-0.062565,1900.9,-0.078101,0.022817,0.99668,-2.6266,#69,-0.39601,0.91677,-0.052019,577.31,-0.91492,-0.39876,-0.062565,1900.9,-0.078101,0.022817,0.99668,-2.6266,#70,-0.39601,0.91677,-0.052019,577.31,-0.91492,-0.39876,-0.062565,1900.9,-0.078101,0.022817,0.99668,-2.6266,#71,-0.39601,0.91677,-0.052019,577.31,-0.91492,-0.39876,-0.062565,1900.9,-0.078101,0.022817,0.99668,-2.6266,#72,-0.39601,0.91677,-0.052019,577.31,-0.91492,-0.39876,-0.062565,1900.9,-0.078101,0.022817,0.99668,-2.6266,#73,-0.39601,0.91677,-0.052019,577.31,-0.91492,-0.39876,-0.062565,1900.9,-0.078101,0.022817,0.99668,-2.6266,#74,-0.39601,0.91677,-0.052019,577.31,-0.91492,-0.39876,-0.062565,1900.9,-0.078101,0.022817,0.99668,-2.6266,#75,-0.39601,0.91677,-0.052019,577.31,-0.91492,-0.39876,-0.062565,1900.9,-0.078101,0.022817,0.99668,-2.6266,#76,-0.39601,0.91677,-0.052019,577.31,-0.91492,-0.39876,-0.062565,1900.9,-0.078101,0.022817,0.99668,-2.6266,#77,-0.39601,0.91677,-0.052019,577.31,-0.91492,-0.39876,-0.062565,1900.9,-0.078101,0.022817,0.99668,-2.6266,#78,-0.39601,0.91677,-0.052019,577.31,-0.91492,-0.39876,-0.062565,1900.9,-0.078101,0.022817,0.99668,-2.6266,#79,-0.39601,0.91677,-0.052019,577.31,-0.91492,-0.39876,-0.062565,1900.9,-0.078101,0.022817,0.99668,-2.6266,#80,-0.39601,0.91677,-0.052019,577.31,-0.91492,-0.39876,-0.062565,1900.9,-0.078101,0.022817,0.99668,-2.6266,#81,-0.39601,0.91677,-0.052019,577.31,-0.91492,-0.39876,-0.062565,1900.9,-0.078101,0.022817,0.99668,-2.6266
> view matrix models
> #55,-0.39601,0.91677,-0.052019,576.11,-0.91492,-0.39876,-0.062565,1902.3,-0.078101,0.022817,0.99668,-5.1043,#56,-0.39601,0.91677,-0.052019,576.11,-0.91492,-0.39876,-0.062565,1902.3,-0.078101,0.022817,0.99668,-5.1043,#57,-0.39601,0.91677,-0.052019,576.11,-0.91492,-0.39876,-0.062565,1902.3,-0.078101,0.022817,0.99668,-5.1043,#58,-0.39601,0.91677,-0.052019,576.11,-0.91492,-0.39876,-0.062565,1902.3,-0.078101,0.022817,0.99668,-5.1043,#59,-0.39601,0.91677,-0.052019,576.11,-0.91492,-0.39876,-0.062565,1902.3,-0.078101,0.022817,0.99668,-5.1043,#60,-0.39601,0.91677,-0.052019,576.11,-0.91492,-0.39876,-0.062565,1902.3,-0.078101,0.022817,0.99668,-5.1043,#61,-0.39601,0.91677,-0.052019,576.11,-0.91492,-0.39876,-0.062565,1902.3,-0.078101,0.022817,0.99668,-5.1043,#62,-0.39601,0.91677,-0.052019,576.11,-0.91492,-0.39876,-0.062565,1902.3,-0.078101,0.022817,0.99668,-5.1043,#63,-0.39601,0.91677,-0.052019,576.11,-0.91492,-0.39876,-0.062565,1902.3,-0.078101,0.022817,0.99668,-5.1043,#64,-0.39601,0.91677,-0.052019,576.11,-0.91492,-0.39876,-0.062565,1902.3,-0.078101,0.022817,0.99668,-5.1043,#65,-0.39601,0.91677,-0.052019,576.11,-0.91492,-0.39876,-0.062565,1902.3,-0.078101,0.022817,0.99668,-5.1043,#66,-0.39601,0.91677,-0.052019,576.11,-0.91492,-0.39876,-0.062565,1902.3,-0.078101,0.022817,0.99668,-5.1043,#67,-0.39601,0.91677,-0.052019,576.11,-0.91492,-0.39876,-0.062565,1902.3,-0.078101,0.022817,0.99668,-5.1043,#68,-0.39601,0.91677,-0.052019,576.11,-0.91492,-0.39876,-0.062565,1902.3,-0.078101,0.022817,0.99668,-5.1043,#69,-0.39601,0.91677,-0.052019,576.11,-0.91492,-0.39876,-0.062565,1902.3,-0.078101,0.022817,0.99668,-5.1043,#70,-0.39601,0.91677,-0.052019,576.11,-0.91492,-0.39876,-0.062565,1902.3,-0.078101,0.022817,0.99668,-5.1043,#71,-0.39601,0.91677,-0.052019,576.11,-0.91492,-0.39876,-0.062565,1902.3,-0.078101,0.022817,0.99668,-5.1043,#72,-0.39601,0.91677,-0.052019,576.11,-0.91492,-0.39876,-0.062565,1902.3,-0.078101,0.022817,0.99668,-5.1043,#73,-0.39601,0.91677,-0.052019,576.11,-0.91492,-0.39876,-0.062565,1902.3,-0.078101,0.022817,0.99668,-5.1043,#74,-0.39601,0.91677,-0.052019,576.11,-0.91492,-0.39876,-0.062565,1902.3,-0.078101,0.022817,0.99668,-5.1043,#75,-0.39601,0.91677,-0.052019,576.11,-0.91492,-0.39876,-0.062565,1902.3,-0.078101,0.022817,0.99668,-5.1043,#76,-0.39601,0.91677,-0.052019,576.11,-0.91492,-0.39876,-0.062565,1902.3,-0.078101,0.022817,0.99668,-5.1043,#77,-0.39601,0.91677,-0.052019,576.11,-0.91492,-0.39876,-0.062565,1902.3,-0.078101,0.022817,0.99668,-5.1043,#78,-0.39601,0.91677,-0.052019,576.11,-0.91492,-0.39876,-0.062565,1902.3,-0.078101,0.022817,0.99668,-5.1043,#79,-0.39601,0.91677,-0.052019,576.11,-0.91492,-0.39876,-0.062565,1902.3,-0.078101,0.022817,0.99668,-5.1043,#80,-0.39601,0.91677,-0.052019,576.11,-0.91492,-0.39876,-0.062565,1902.3,-0.078101,0.022817,0.99668,-5.1043,#81,-0.39601,0.91677,-0.052019,576.11,-0.91492,-0.39876,-0.062565,1902.3,-0.078101,0.022817,0.99668,-5.1043
> view matrix models
> #55,-0.39601,0.91677,-0.052019,574.57,-0.91492,-0.39876,-0.062565,1909.7,-0.078101,0.022817,0.99668,-15.806,#56,-0.39601,0.91677,-0.052019,574.57,-0.91492,-0.39876,-0.062565,1909.7,-0.078101,0.022817,0.99668,-15.806,#57,-0.39601,0.91677,-0.052019,574.57,-0.91492,-0.39876,-0.062565,1909.7,-0.078101,0.022817,0.99668,-15.806,#58,-0.39601,0.91677,-0.052019,574.57,-0.91492,-0.39876,-0.062565,1909.7,-0.078101,0.022817,0.99668,-15.806,#59,-0.39601,0.91677,-0.052019,574.57,-0.91492,-0.39876,-0.062565,1909.7,-0.078101,0.022817,0.99668,-15.806,#60,-0.39601,0.91677,-0.052019,574.57,-0.91492,-0.39876,-0.062565,1909.7,-0.078101,0.022817,0.99668,-15.806,#61,-0.39601,0.91677,-0.052019,574.57,-0.91492,-0.39876,-0.062565,1909.7,-0.078101,0.022817,0.99668,-15.806,#62,-0.39601,0.91677,-0.052019,574.57,-0.91492,-0.39876,-0.062565,1909.7,-0.078101,0.022817,0.99668,-15.806,#63,-0.39601,0.91677,-0.052019,574.57,-0.91492,-0.39876,-0.062565,1909.7,-0.078101,0.022817,0.99668,-15.806,#64,-0.39601,0.91677,-0.052019,574.57,-0.91492,-0.39876,-0.062565,1909.7,-0.078101,0.022817,0.99668,-15.806,#65,-0.39601,0.91677,-0.052019,574.57,-0.91492,-0.39876,-0.062565,1909.7,-0.078101,0.022817,0.99668,-15.806,#66,-0.39601,0.91677,-0.052019,574.57,-0.91492,-0.39876,-0.062565,1909.7,-0.078101,0.022817,0.99668,-15.806,#67,-0.39601,0.91677,-0.052019,574.57,-0.91492,-0.39876,-0.062565,1909.7,-0.078101,0.022817,0.99668,-15.806,#68,-0.39601,0.91677,-0.052019,574.57,-0.91492,-0.39876,-0.062565,1909.7,-0.078101,0.022817,0.99668,-15.806,#69,-0.39601,0.91677,-0.052019,574.57,-0.91492,-0.39876,-0.062565,1909.7,-0.078101,0.022817,0.99668,-15.806,#70,-0.39601,0.91677,-0.052019,574.57,-0.91492,-0.39876,-0.062565,1909.7,-0.078101,0.022817,0.99668,-15.806,#71,-0.39601,0.91677,-0.052019,574.57,-0.91492,-0.39876,-0.062565,1909.7,-0.078101,0.022817,0.99668,-15.806,#72,-0.39601,0.91677,-0.052019,574.57,-0.91492,-0.39876,-0.062565,1909.7,-0.078101,0.022817,0.99668,-15.806,#73,-0.39601,0.91677,-0.052019,574.57,-0.91492,-0.39876,-0.062565,1909.7,-0.078101,0.022817,0.99668,-15.806,#74,-0.39601,0.91677,-0.052019,574.57,-0.91492,-0.39876,-0.062565,1909.7,-0.078101,0.022817,0.99668,-15.806,#75,-0.39601,0.91677,-0.052019,574.57,-0.91492,-0.39876,-0.062565,1909.7,-0.078101,0.022817,0.99668,-15.806,#76,-0.39601,0.91677,-0.052019,574.57,-0.91492,-0.39876,-0.062565,1909.7,-0.078101,0.022817,0.99668,-15.806,#77,-0.39601,0.91677,-0.052019,574.57,-0.91492,-0.39876,-0.062565,1909.7,-0.078101,0.022817,0.99668,-15.806,#78,-0.39601,0.91677,-0.052019,574.57,-0.91492,-0.39876,-0.062565,1909.7,-0.078101,0.022817,0.99668,-15.806,#79,-0.39601,0.91677,-0.052019,574.57,-0.91492,-0.39876,-0.062565,1909.7,-0.078101,0.022817,0.99668,-15.806,#80,-0.39601,0.91677,-0.052019,574.57,-0.91492,-0.39876,-0.062565,1909.7,-0.078101,0.022817,0.99668,-15.806,#81,-0.39601,0.91677,-0.052019,574.57,-0.91492,-0.39876,-0.062565,1909.7,-0.078101,0.022817,0.99668,-15.806
> view matrix models
> #55,-0.39601,0.91677,-0.052019,573.87,-0.91492,-0.39876,-0.062565,1900.4,-0.078101,0.022817,0.99668,7.7325,#56,-0.39601,0.91677,-0.052019,573.87,-0.91492,-0.39876,-0.062565,1900.4,-0.078101,0.022817,0.99668,7.7325,#57,-0.39601,0.91677,-0.052019,573.87,-0.91492,-0.39876,-0.062565,1900.4,-0.078101,0.022817,0.99668,7.7325,#58,-0.39601,0.91677,-0.052019,573.87,-0.91492,-0.39876,-0.062565,1900.4,-0.078101,0.022817,0.99668,7.7325,#59,-0.39601,0.91677,-0.052019,573.87,-0.91492,-0.39876,-0.062565,1900.4,-0.078101,0.022817,0.99668,7.7325,#60,-0.39601,0.91677,-0.052019,573.87,-0.91492,-0.39876,-0.062565,1900.4,-0.078101,0.022817,0.99668,7.7325,#61,-0.39601,0.91677,-0.052019,573.87,-0.91492,-0.39876,-0.062565,1900.4,-0.078101,0.022817,0.99668,7.7325,#62,-0.39601,0.91677,-0.052019,573.87,-0.91492,-0.39876,-0.062565,1900.4,-0.078101,0.022817,0.99668,7.7325,#63,-0.39601,0.91677,-0.052019,573.87,-0.91492,-0.39876,-0.062565,1900.4,-0.078101,0.022817,0.99668,7.7325,#64,-0.39601,0.91677,-0.052019,573.87,-0.91492,-0.39876,-0.062565,1900.4,-0.078101,0.022817,0.99668,7.7325,#65,-0.39601,0.91677,-0.052019,573.87,-0.91492,-0.39876,-0.062565,1900.4,-0.078101,0.022817,0.99668,7.7325,#66,-0.39601,0.91677,-0.052019,573.87,-0.91492,-0.39876,-0.062565,1900.4,-0.078101,0.022817,0.99668,7.7325,#67,-0.39601,0.91677,-0.052019,573.87,-0.91492,-0.39876,-0.062565,1900.4,-0.078101,0.022817,0.99668,7.7325,#68,-0.39601,0.91677,-0.052019,573.87,-0.91492,-0.39876,-0.062565,1900.4,-0.078101,0.022817,0.99668,7.7325,#69,-0.39601,0.91677,-0.052019,573.87,-0.91492,-0.39876,-0.062565,1900.4,-0.078101,0.022817,0.99668,7.7325,#70,-0.39601,0.91677,-0.052019,573.87,-0.91492,-0.39876,-0.062565,1900.4,-0.078101,0.022817,0.99668,7.7325,#71,-0.39601,0.91677,-0.052019,573.87,-0.91492,-0.39876,-0.062565,1900.4,-0.078101,0.022817,0.99668,7.7325,#72,-0.39601,0.91677,-0.052019,573.87,-0.91492,-0.39876,-0.062565,1900.4,-0.078101,0.022817,0.99668,7.7325,#73,-0.39601,0.91677,-0.052019,573.87,-0.91492,-0.39876,-0.062565,1900.4,-0.078101,0.022817,0.99668,7.7325,#74,-0.39601,0.91677,-0.052019,573.87,-0.91492,-0.39876,-0.062565,1900.4,-0.078101,0.022817,0.99668,7.7325,#75,-0.39601,0.91677,-0.052019,573.87,-0.91492,-0.39876,-0.062565,1900.4,-0.078101,0.022817,0.99668,7.7325,#76,-0.39601,0.91677,-0.052019,573.87,-0.91492,-0.39876,-0.062565,1900.4,-0.078101,0.022817,0.99668,7.7325,#77,-0.39601,0.91677,-0.052019,573.87,-0.91492,-0.39876,-0.062565,1900.4,-0.078101,0.022817,0.99668,7.7325,#78,-0.39601,0.91677,-0.052019,573.87,-0.91492,-0.39876,-0.062565,1900.4,-0.078101,0.022817,0.99668,7.7325,#79,-0.39601,0.91677,-0.052019,573.87,-0.91492,-0.39876,-0.062565,1900.4,-0.078101,0.022817,0.99668,7.7325,#80,-0.39601,0.91677,-0.052019,573.87,-0.91492,-0.39876,-0.062565,1900.4,-0.078101,0.022817,0.99668,7.7325,#81,-0.39601,0.91677,-0.052019,573.87,-0.91492,-0.39876,-0.062565,1900.4,-0.078101,0.022817,0.99668,7.7325
> hide #!49-54 target m
> volume add #46,47,48
Opened volume sum as #82, grid size 55,55,55, pixel 13.3, shown at step 1,
values float32
> volume #82 color #b2b2b2a6
> ui tool show "Fit in Map"
> fitmap sel inMap #82
Fit molecules Nup133_propeller_CRinner.pdb (#55), Nup133_propeller_CRouter.pdb
(#56), Nup133_propeller_NRinner.pdb (#57), Nup133_propeller_NRouter.pdb (#58),
Nup98_CRconnector.pdb (#59), Nup98_NRconnector.pdb (#60), Y_CRinner.pdb (#61),
Y_CRouter.pdb (#62), Y_NRinner.pdb (#63), Y_NRouter.pdb (#64),
hNup155_CRconnector_CTD.pdb (#65), hNup155_CRconnector_NTD.pdb (#66),
hNup155_NRconnector_CTD.pdb (#67), hNup155_NRconnector_NTD.pdb (#68),
hNup358_1_CRinner.pdb (#69), hNup358_1_CRouter.pdb (#70),
hNup358_2_CRinner.pdb (#71), hNup358_2_CRouter.pdb (#72), hNup358_CRmiddle.pdb
(#73), hNup53_dimer_IRcyt_innerF7.pdb (#74), hNup53_dimer_IRcyt_outerG7.pdb
(#75), hNup53_dimer_IRnuc_innerF0.pdb (#76), hNup53_dimer_IRnuc_outerG0.pdb
(#77), hNups_IRcyt_inner.pdb (#78), hNups_IRcyt_outer.pdb (#79),
hNups_IRnuc_inner.pdb (#80), hNups_IRnuc_outer.pdb (#81) to map volume sum
(#82) using 615326 atoms
average map value = 0.08471, steps = 88
shifted from previous position = 40.9
rotated from previous position = 21.5 degrees
atoms outside contour = 126066, contour level = 0.043111
Position of Nup133_propeller_CRinner.pdb (#55) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
Position of Nup133_propeller_CRouter.pdb (#56) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
Position of Nup133_propeller_NRinner.pdb (#57) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
Position of Nup133_propeller_NRouter.pdb (#58) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
Position of Nup98_CRconnector.pdb (#59) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
Position of Nup98_NRconnector.pdb (#60) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
Position of Y_CRinner.pdb (#61) relative to volume sum (#82) coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
Position of Y_CRouter.pdb (#62) relative to volume sum (#82) coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
Position of Y_NRinner.pdb (#63) relative to volume sum (#82) coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
Position of Y_NRouter.pdb (#64) relative to volume sum (#82) coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
Position of hNup155_CRconnector_CTD.pdb (#65) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
Position of hNup155_CRconnector_NTD.pdb (#66) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
Position of hNup155_NRconnector_CTD.pdb (#67) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
Position of hNup155_NRconnector_NTD.pdb (#68) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
Position of hNup358_1_CRinner.pdb (#69) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
Position of hNup358_1_CRouter.pdb (#70) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
Position of hNup358_2_CRinner.pdb (#71) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
Position of hNup358_2_CRouter.pdb (#72) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
Position of hNup358_CRmiddle.pdb (#73) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
Position of hNup53_dimer_IRcyt_innerF7.pdb (#74) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
Position of hNup53_dimer_IRcyt_outerG7.pdb (#75) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
Position of hNup53_dimer_IRnuc_innerF0.pdb (#76) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
Position of hNup53_dimer_IRnuc_outerG0.pdb (#77) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
Position of hNups_IRcyt_inner.pdb (#78) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
Position of hNups_IRcyt_outer.pdb (#79) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
Position of hNups_IRnuc_inner.pdb (#80) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
Position of hNups_IRnuc_outer.pdb (#81) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
> fitmap sel inMap #82
Fit molecules Nup133_propeller_CRinner.pdb (#55), Nup133_propeller_CRouter.pdb
(#56), Nup133_propeller_NRinner.pdb (#57), Nup133_propeller_NRouter.pdb (#58),
Nup98_CRconnector.pdb (#59), Nup98_NRconnector.pdb (#60), Y_CRinner.pdb (#61),
Y_CRouter.pdb (#62), Y_NRinner.pdb (#63), Y_NRouter.pdb (#64),
hNup155_CRconnector_CTD.pdb (#65), hNup155_CRconnector_NTD.pdb (#66),
hNup155_NRconnector_CTD.pdb (#67), hNup155_NRconnector_NTD.pdb (#68),
hNup358_1_CRinner.pdb (#69), hNup358_1_CRouter.pdb (#70),
hNup358_2_CRinner.pdb (#71), hNup358_2_CRouter.pdb (#72), hNup358_CRmiddle.pdb
(#73), hNup53_dimer_IRcyt_innerF7.pdb (#74), hNup53_dimer_IRcyt_outerG7.pdb
(#75), hNup53_dimer_IRnuc_innerF0.pdb (#76), hNup53_dimer_IRnuc_outerG0.pdb
(#77), hNups_IRcyt_inner.pdb (#78), hNups_IRcyt_outer.pdb (#79),
hNups_IRnuc_inner.pdb (#80), hNups_IRnuc_outer.pdb (#81) to map volume sum
(#82) using 615326 atoms
average map value = 0.08471, steps = 36
shifted from previous position = 0.0272
rotated from previous position = 0.0167 degrees
atoms outside contour = 126099, contour level = 0.043111
Position of Nup133_propeller_CRinner.pdb (#55) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70095767 0.71315855 -0.00795140 854.12043073
-0.71317302 -0.70098678 -0.00133446 2059.03111544
-0.00652550 0.00473533 0.99996750 -2.10194819
Axis 0.00425548 -0.00099968 -0.99999045
Axis point 858.70511698 850.46485355 0.00000000
Rotation angle (degrees) 134.50636356
Shift along axis 3.67823871
Position of Nup133_propeller_CRouter.pdb (#56) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70095767 0.71315855 -0.00795140 854.12043073
-0.71317302 -0.70098678 -0.00133446 2059.03111544
-0.00652550 0.00473533 0.99996750 -2.10194819
Axis 0.00425548 -0.00099968 -0.99999045
Axis point 858.70511698 850.46485355 0.00000000
Rotation angle (degrees) 134.50636356
Shift along axis 3.67823871
Position of Nup133_propeller_NRinner.pdb (#57) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70095767 0.71315855 -0.00795140 854.12043073
-0.71317302 -0.70098678 -0.00133446 2059.03111544
-0.00652550 0.00473533 0.99996750 -2.10194819
Axis 0.00425548 -0.00099968 -0.99999045
Axis point 858.70511698 850.46485355 0.00000000
Rotation angle (degrees) 134.50636356
Shift along axis 3.67823871
Position of Nup133_propeller_NRouter.pdb (#58) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70095767 0.71315855 -0.00795140 854.12043073
-0.71317302 -0.70098678 -0.00133446 2059.03111544
-0.00652550 0.00473533 0.99996750 -2.10194819
Axis 0.00425548 -0.00099968 -0.99999045
Axis point 858.70511698 850.46485355 0.00000000
Rotation angle (degrees) 134.50636356
Shift along axis 3.67823871
Position of Nup98_CRconnector.pdb (#59) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70095767 0.71315855 -0.00795140 854.12043073
-0.71317302 -0.70098678 -0.00133446 2059.03111544
-0.00652550 0.00473533 0.99996750 -2.10194819
Axis 0.00425548 -0.00099968 -0.99999045
Axis point 858.70511698 850.46485355 0.00000000
Rotation angle (degrees) 134.50636356
Shift along axis 3.67823871
Position of Nup98_NRconnector.pdb (#60) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70095767 0.71315855 -0.00795140 854.12043073
-0.71317302 -0.70098678 -0.00133446 2059.03111544
-0.00652550 0.00473533 0.99996750 -2.10194819
Axis 0.00425548 -0.00099968 -0.99999045
Axis point 858.70511698 850.46485355 0.00000000
Rotation angle (degrees) 134.50636356
Shift along axis 3.67823871
Position of Y_CRinner.pdb (#61) relative to volume sum (#82) coordinates:
Matrix rotation and translation
-0.70095767 0.71315855 -0.00795140 854.12043073
-0.71317302 -0.70098678 -0.00133446 2059.03111544
-0.00652550 0.00473533 0.99996750 -2.10194819
Axis 0.00425548 -0.00099968 -0.99999045
Axis point 858.70511698 850.46485355 0.00000000
Rotation angle (degrees) 134.50636356
Shift along axis 3.67823871
Position of Y_CRouter.pdb (#62) relative to volume sum (#82) coordinates:
Matrix rotation and translation
-0.70095767 0.71315855 -0.00795140 854.12043073
-0.71317302 -0.70098678 -0.00133446 2059.03111544
-0.00652550 0.00473533 0.99996750 -2.10194819
Axis 0.00425548 -0.00099968 -0.99999045
Axis point 858.70511698 850.46485355 0.00000000
Rotation angle (degrees) 134.50636356
Shift along axis 3.67823871
Position of Y_NRinner.pdb (#63) relative to volume sum (#82) coordinates:
Matrix rotation and translation
-0.70095767 0.71315855 -0.00795140 854.12043073
-0.71317302 -0.70098678 -0.00133446 2059.03111544
-0.00652550 0.00473533 0.99996750 -2.10194819
Axis 0.00425548 -0.00099968 -0.99999045
Axis point 858.70511698 850.46485355 0.00000000
Rotation angle (degrees) 134.50636356
Shift along axis 3.67823871
Position of Y_NRouter.pdb (#64) relative to volume sum (#82) coordinates:
Matrix rotation and translation
-0.70095767 0.71315855 -0.00795140 854.12043073
-0.71317302 -0.70098678 -0.00133446 2059.03111544
-0.00652550 0.00473533 0.99996750 -2.10194819
Axis 0.00425548 -0.00099968 -0.99999045
Axis point 858.70511698 850.46485355 0.00000000
Rotation angle (degrees) 134.50636356
Shift along axis 3.67823871
Position of hNup155_CRconnector_CTD.pdb (#65) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70095767 0.71315855 -0.00795140 854.12043073
-0.71317302 -0.70098678 -0.00133446 2059.03111544
-0.00652550 0.00473533 0.99996750 -2.10194819
Axis 0.00425548 -0.00099968 -0.99999045
Axis point 858.70511698 850.46485355 0.00000000
Rotation angle (degrees) 134.50636356
Shift along axis 3.67823871
Position of hNup155_CRconnector_NTD.pdb (#66) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70095767 0.71315855 -0.00795140 854.12043073
-0.71317302 -0.70098678 -0.00133446 2059.03111544
-0.00652550 0.00473533 0.99996750 -2.10194819
Axis 0.00425548 -0.00099968 -0.99999045
Axis point 858.70511698 850.46485355 0.00000000
Rotation angle (degrees) 134.50636356
Shift along axis 3.67823871
Position of hNup155_NRconnector_CTD.pdb (#67) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70095767 0.71315855 -0.00795140 854.12043073
-0.71317302 -0.70098678 -0.00133446 2059.03111544
-0.00652550 0.00473533 0.99996750 -2.10194819
Axis 0.00425548 -0.00099968 -0.99999045
Axis point 858.70511698 850.46485355 0.00000000
Rotation angle (degrees) 134.50636356
Shift along axis 3.67823871
Position of hNup155_NRconnector_NTD.pdb (#68) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70095767 0.71315855 -0.00795140 854.12043073
-0.71317302 -0.70098678 -0.00133446 2059.03111544
-0.00652550 0.00473533 0.99996750 -2.10194819
Axis 0.00425548 -0.00099968 -0.99999045
Axis point 858.70511698 850.46485355 0.00000000
Rotation angle (degrees) 134.50636356
Shift along axis 3.67823871
Position of hNup358_1_CRinner.pdb (#69) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70095767 0.71315855 -0.00795140 854.12043073
-0.71317302 -0.70098678 -0.00133446 2059.03111544
-0.00652550 0.00473533 0.99996750 -2.10194819
Axis 0.00425548 -0.00099968 -0.99999045
Axis point 858.70511698 850.46485355 0.00000000
Rotation angle (degrees) 134.50636356
Shift along axis 3.67823871
Position of hNup358_1_CRouter.pdb (#70) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70095767 0.71315855 -0.00795140 854.12043073
-0.71317302 -0.70098678 -0.00133446 2059.03111544
-0.00652550 0.00473533 0.99996750 -2.10194819
Axis 0.00425548 -0.00099968 -0.99999045
Axis point 858.70511698 850.46485355 0.00000000
Rotation angle (degrees) 134.50636356
Shift along axis 3.67823871
Position of hNup358_2_CRinner.pdb (#71) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70095767 0.71315855 -0.00795140 854.12043073
-0.71317302 -0.70098678 -0.00133446 2059.03111544
-0.00652550 0.00473533 0.99996750 -2.10194819
Axis 0.00425548 -0.00099968 -0.99999045
Axis point 858.70511698 850.46485355 0.00000000
Rotation angle (degrees) 134.50636356
Shift along axis 3.67823871
Position of hNup358_2_CRouter.pdb (#72) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70095767 0.71315855 -0.00795140 854.12043073
-0.71317302 -0.70098678 -0.00133446 2059.03111544
-0.00652550 0.00473533 0.99996750 -2.10194819
Axis 0.00425548 -0.00099968 -0.99999045
Axis point 858.70511698 850.46485355 0.00000000
Rotation angle (degrees) 134.50636356
Shift along axis 3.67823871
Position of hNup358_CRmiddle.pdb (#73) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70095767 0.71315855 -0.00795140 854.12043073
-0.71317302 -0.70098678 -0.00133446 2059.03111544
-0.00652550 0.00473533 0.99996750 -2.10194819
Axis 0.00425548 -0.00099968 -0.99999045
Axis point 858.70511698 850.46485355 0.00000000
Rotation angle (degrees) 134.50636356
Shift along axis 3.67823871
Position of hNup53_dimer_IRcyt_innerF7.pdb (#74) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70095767 0.71315855 -0.00795140 854.12043073
-0.71317302 -0.70098678 -0.00133446 2059.03111544
-0.00652550 0.00473533 0.99996750 -2.10194819
Axis 0.00425548 -0.00099968 -0.99999045
Axis point 858.70511698 850.46485355 0.00000000
Rotation angle (degrees) 134.50636356
Shift along axis 3.67823871
Position of hNup53_dimer_IRcyt_outerG7.pdb (#75) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70095767 0.71315855 -0.00795140 854.12043073
-0.71317302 -0.70098678 -0.00133446 2059.03111544
-0.00652550 0.00473533 0.99996750 -2.10194819
Axis 0.00425548 -0.00099968 -0.99999045
Axis point 858.70511698 850.46485355 0.00000000
Rotation angle (degrees) 134.50636356
Shift along axis 3.67823871
Position of hNup53_dimer_IRnuc_innerF0.pdb (#76) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70095767 0.71315855 -0.00795140 854.12043073
-0.71317302 -0.70098678 -0.00133446 2059.03111544
-0.00652550 0.00473533 0.99996750 -2.10194819
Axis 0.00425548 -0.00099968 -0.99999045
Axis point 858.70511698 850.46485355 0.00000000
Rotation angle (degrees) 134.50636356
Shift along axis 3.67823871
Position of hNup53_dimer_IRnuc_outerG0.pdb (#77) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70095767 0.71315855 -0.00795140 854.12043073
-0.71317302 -0.70098678 -0.00133446 2059.03111544
-0.00652550 0.00473533 0.99996750 -2.10194819
Axis 0.00425548 -0.00099968 -0.99999045
Axis point 858.70511698 850.46485355 0.00000000
Rotation angle (degrees) 134.50636356
Shift along axis 3.67823871
Position of hNups_IRcyt_inner.pdb (#78) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70095767 0.71315855 -0.00795140 854.12043073
-0.71317302 -0.70098678 -0.00133446 2059.03111544
-0.00652550 0.00473533 0.99996750 -2.10194819
Axis 0.00425548 -0.00099968 -0.99999045
Axis point 858.70511698 850.46485355 0.00000000
Rotation angle (degrees) 134.50636356
Shift along axis 3.67823871
Position of hNups_IRcyt_outer.pdb (#79) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70095767 0.71315855 -0.00795140 854.12043073
-0.71317302 -0.70098678 -0.00133446 2059.03111544
-0.00652550 0.00473533 0.99996750 -2.10194819
Axis 0.00425548 -0.00099968 -0.99999045
Axis point 858.70511698 850.46485355 0.00000000
Rotation angle (degrees) 134.50636356
Shift along axis 3.67823871
Position of hNups_IRnuc_inner.pdb (#80) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70095767 0.71315855 -0.00795140 854.12043073
-0.71317302 -0.70098678 -0.00133446 2059.03111544
-0.00652550 0.00473533 0.99996750 -2.10194819
Axis 0.00425548 -0.00099968 -0.99999045
Axis point 858.70511698 850.46485355 0.00000000
Rotation angle (degrees) 134.50636356
Shift along axis 3.67823871
Position of hNups_IRnuc_outer.pdb (#81) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70095767 0.71315855 -0.00795140 854.12043073
-0.71317302 -0.70098678 -0.00133446 2059.03111544
-0.00652550 0.00473533 0.99996750 -2.10194819
Axis 0.00425548 -0.00099968 -0.99999045
Axis point 858.70511698 850.46485355 0.00000000
Rotation angle (degrees) 134.50636356
Shift along axis 3.67823871
> fitmap sel inMap #82
Fit molecules Nup133_propeller_CRinner.pdb (#55), Nup133_propeller_CRouter.pdb
(#56), Nup133_propeller_NRinner.pdb (#57), Nup133_propeller_NRouter.pdb (#58),
Nup98_CRconnector.pdb (#59), Nup98_NRconnector.pdb (#60), Y_CRinner.pdb (#61),
Y_CRouter.pdb (#62), Y_NRinner.pdb (#63), Y_NRouter.pdb (#64),
hNup155_CRconnector_CTD.pdb (#65), hNup155_CRconnector_NTD.pdb (#66),
hNup155_NRconnector_CTD.pdb (#67), hNup155_NRconnector_NTD.pdb (#68),
hNup358_1_CRinner.pdb (#69), hNup358_1_CRouter.pdb (#70),
hNup358_2_CRinner.pdb (#71), hNup358_2_CRouter.pdb (#72), hNup358_CRmiddle.pdb
(#73), hNup53_dimer_IRcyt_innerF7.pdb (#74), hNup53_dimer_IRcyt_outerG7.pdb
(#75), hNup53_dimer_IRnuc_innerF0.pdb (#76), hNup53_dimer_IRnuc_outerG0.pdb
(#77), hNups_IRcyt_inner.pdb (#78), hNups_IRcyt_outer.pdb (#79),
hNups_IRnuc_inner.pdb (#80), hNups_IRnuc_outer.pdb (#81) to map volume sum
(#82) using 615326 atoms
average map value = 0.08471, steps = 88
shifted from previous position = 40.9
rotated from previous position = 21.5 degrees
atoms outside contour = 126066, contour level = 0.043111
Position of Nup133_propeller_CRinner.pdb (#55) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
Position of Nup133_propeller_CRouter.pdb (#56) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
Position of Nup133_propeller_NRinner.pdb (#57) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
Position of Nup133_propeller_NRouter.pdb (#58) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
Position of Nup98_CRconnector.pdb (#59) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
Position of Nup98_NRconnector.pdb (#60) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
Position of Y_CRinner.pdb (#61) relative to volume sum (#82) coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
Position of Y_CRouter.pdb (#62) relative to volume sum (#82) coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
Position of Y_NRinner.pdb (#63) relative to volume sum (#82) coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
Position of Y_NRouter.pdb (#64) relative to volume sum (#82) coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
Position of hNup155_CRconnector_CTD.pdb (#65) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
Position of hNup155_CRconnector_NTD.pdb (#66) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
Position of hNup155_NRconnector_CTD.pdb (#67) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
Position of hNup155_NRconnector_NTD.pdb (#68) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
Position of hNup358_1_CRinner.pdb (#69) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
Position of hNup358_1_CRouter.pdb (#70) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
Position of hNup358_2_CRinner.pdb (#71) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
Position of hNup358_2_CRouter.pdb (#72) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
Position of hNup358_CRmiddle.pdb (#73) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
Position of hNup53_dimer_IRcyt_innerF7.pdb (#74) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
Position of hNup53_dimer_IRcyt_outerG7.pdb (#75) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
Position of hNup53_dimer_IRnuc_innerF0.pdb (#76) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
Position of hNup53_dimer_IRnuc_outerG0.pdb (#77) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
Position of hNups_IRcyt_inner.pdb (#78) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
Position of hNups_IRcyt_outer.pdb (#79) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
Position of hNups_IRnuc_inner.pdb (#80) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
Position of hNups_IRnuc_outer.pdb (#81) relative to volume sum (#82)
coordinates:
Matrix rotation and translation
-0.70088650 0.71323059 -0.00776097 853.86968998
-0.71324542 -0.70091346 -0.00113840 2058.81290416
-0.00625171 0.00473758 0.99996924 -2.22928043
Axis 0.00411919 -0.00105802 -0.99999096
Axis point 858.59572615 850.38260105 0.00000000
Rotation angle (degrees) 134.50048976
Shift along axis 3.56824331
> show #!45 models
> select clear
> hide #!82 models
> show #!33 models
> hide #!33 models
> show #!35 models
> show #!26 models
> hide #!26 models
> hide #!35 models
> hide #!45 models
Drag select of 17624 residues, 2 pseudobonds
> select clear
> hide #55-60,69-77#!61-68,78-81 target m
> show #55-60,69-77#!61-68,78-81 target m
> show #!82 models
> volume #82 level 0.07815
> combine #55-81 retainIds true
'retainIds' requires residues number / insertion code combos be unique in each
chain with the same ID (duplicate: /R MET 1)
> combine #55-81
Remapping chain ID 'K' in Nup133_propeller_CRouter.pdb #56 to 'L'
Remapping chain ID 'R' in Nup133_propeller_CRouter.pdb #56 to 'T'
Remapping chain ID 'S' in Nup133_propeller_CRouter.pdb #56 to 'U'
Remapping chain ID 'K' in Nup133_propeller_NRinner.pdb #57 to 'M'
Remapping chain ID 'R' in Nup133_propeller_NRinner.pdb #57 to 'V'
Remapping chain ID 'S' in Nup133_propeller_NRinner.pdb #57 to 'W'
Remapping chain ID 'T' in Nup133_propeller_NRinner.pdb #57 to 'X'
Remapping chain ID 'K' in Nup133_propeller_NRouter.pdb #58 to 'N'
Remapping chain ID 'R' in Nup133_propeller_NRouter.pdb #58 to 'Y'
Remapping chain ID 'S' in Nup133_propeller_NRouter.pdb #58 to 'Z'
Remapping chain ID 'T' in Nup133_propeller_NRouter.pdb #58 to 'a'
Remapping chain ID 'U' in Nup98_CRconnector.pdb #59 to 'b'
Remapping chain ID 'U' in Nup98_NRconnector.pdb #60 to 'c'
Remapping chain ID 'K' in Y_CRinner.pdb #61 to 'd'
Remapping chain ID 'L' in Y_CRinner.pdb #61 to 'e'
Remapping chain ID 'M' in Y_CRinner.pdb #61 to 'f'
Remapping chain ID 'N' in Y_CRinner.pdb #61 to 'g'
Remapping chain ID 'R' in Y_CRinner.pdb #61 to 'h'
Remapping chain ID 'S' in Y_CRinner.pdb #61 to 'i'
Remapping chain ID 'A' in Y_CRouter.pdb #62 to 'B'
Remapping chain ID 'C' in Y_CRouter.pdb #62 to 'D'
Remapping chain ID 'K' in Y_CRouter.pdb #62 to 'j'
Remapping chain ID 'L' in Y_CRouter.pdb #62 to 'k'
Remapping chain ID 'M' in Y_CRouter.pdb #62 to 'l'
Remapping chain ID 'N' in Y_CRouter.pdb #62 to 'm'
Remapping chain ID 'O' in Y_CRouter.pdb #62 to 'n'
Remapping chain ID 'P' in Y_CRouter.pdb #62 to 'o'
Remapping chain ID 'Q' in Y_CRouter.pdb #62 to 'p'
Remapping chain ID 'R' in Y_CRouter.pdb #62 to 'q'
Remapping chain ID 'S' in Y_CRouter.pdb #62 to 'r'
Remapping chain ID 'U' in Y_CRouter.pdb #62 to 's'
Remapping chain ID 'V' in Y_CRouter.pdb #62 to 't'
Remapping chain ID 'W' in Y_CRouter.pdb #62 to 'u'
Remapping chain ID 'K' in Y_NRinner.pdb #63 to 'v'
Remapping chain ID 'L' in Y_NRinner.pdb #63 to 'w'
Remapping chain ID 'M' in Y_NRinner.pdb #63 to 'x'
Remapping chain ID 'N' in Y_NRinner.pdb #63 to 'y'
Remapping chain ID 'O' in Y_NRinner.pdb #63 to 'z'
Remapping chain ID 'P' in Y_NRinner.pdb #63 to '1'
Remapping chain ID 'Q' in Y_NRinner.pdb #63 to '2'
Remapping chain ID 'R' in Y_NRinner.pdb #63 to '3'
Remapping chain ID 'S' in Y_NRinner.pdb #63 to '4'
Remapping chain ID 'T' in Y_NRinner.pdb #63 to '5'
Remapping chain ID 'A' in Y_NRouter.pdb #64 to 'E'
Remapping chain ID 'C' in Y_NRouter.pdb #64 to 'F'
Remapping chain ID 'K' in Y_NRouter.pdb #64 to '6'
Remapping chain ID 'L' in Y_NRouter.pdb #64 to '7'
Remapping chain ID 'M' in Y_NRouter.pdb #64 to '8'
Remapping chain ID 'N' in Y_NRouter.pdb #64 to '9'
Remapping chain ID 'O' in Y_NRouter.pdb #64 to '0'
Remapping chain ID 'P' in Y_NRouter.pdb #64 to 'AA'
Remapping chain ID 'Q' in Y_NRouter.pdb #64 to 'AB'
Remapping chain ID 'R' in Y_NRouter.pdb #64 to 'AC'
Remapping chain ID 'S' in Y_NRouter.pdb #64 to 'AD'
Remapping chain ID 'T' in Y_NRouter.pdb #64 to 'AE'
Remapping chain ID 'D' in hNup155_CRconnector_CTD.pdb #65 to 'G'
Remapping chain ID 'D' in hNup155_CRconnector_NTD.pdb #66 to 'H'
Remapping chain ID 'D' in hNup155_NRconnector_CTD.pdb #67 to 'I'
Remapping chain ID 'D' in hNup155_NRconnector_NTD.pdb #68 to 'AF'
Remapping chain ID '0' in hNup358_1_CRinner.pdb #69 to 'AG'
Remapping chain ID '0' in hNup358_1_CRouter.pdb #70 to 'AH'
Remapping chain ID '0' in hNup358_2_CRinner.pdb #71 to 'AI'
Remapping chain ID '0' in hNup358_2_CRouter.pdb #72 to 'AJ'
Remapping chain ID '0' in hNup358_CRmiddle.pdb #73 to 'AK'
Remapping chain ID 'F' in hNup53_dimer_IRcyt_innerF7.pdb #74 to 'AL'
Remapping chain ID 'F' in hNup53_dimer_IRcyt_outerG7.pdb #75 to 'AM'
Remapping chain ID 'F' in hNup53_dimer_IRnuc_innerF0.pdb #76 to 'AN'
Remapping chain ID 'F' in hNup53_dimer_IRnuc_outerG0.pdb #77 to 'AO'
Remapping chain ID '4' in hNups_IRcyt_inner.pdb #78 to 'AP'
Remapping chain ID 'A' in hNups_IRcyt_inner.pdb #78 to 'AQ'
Remapping chain ID 'C' in hNups_IRcyt_inner.pdb #78 to 'AR'
Remapping chain ID 'D' in hNups_IRcyt_inner.pdb #78 to 'AS'
Remapping chain ID 'E' in hNups_IRcyt_inner.pdb #78 to 'AT'
Remapping chain ID 'F' in hNups_IRcyt_inner.pdb #78 to 'AU'
Remapping chain ID 'H' in hNups_IRcyt_inner.pdb #78 to 'AV'
Remapping chain ID 'I' in hNups_IRcyt_inner.pdb #78 to 'AW'
Remapping chain ID 'J' in hNups_IRcyt_inner.pdb #78 to 'AX'
Remapping chain ID 'U' in hNups_IRcyt_inner.pdb #78 to 'AY'
Remapping chain ID 'A' in hNups_IRcyt_outer.pdb #79 to 'AZ'
Remapping chain ID 'B' in hNups_IRcyt_outer.pdb #79 to 'Aa'
Remapping chain ID 'D' in hNups_IRcyt_outer.pdb #79 to 'Ab'
Remapping chain ID 'F' in hNups_IRcyt_outer.pdb #79 to 'Ac'
Remapping chain ID 'H' in hNups_IRcyt_outer.pdb #79 to 'Ad'
Remapping chain ID 'I' in hNups_IRcyt_outer.pdb #79 to 'Ae'
Remapping chain ID 'J' in hNups_IRcyt_outer.pdb #79 to 'Af'
Remapping chain ID 'U' in hNups_IRcyt_outer.pdb #79 to 'Ag'
Remapping chain ID '4' in hNups_IRnuc_inner.pdb #80 to 'Ah'
Remapping chain ID 'A' in hNups_IRnuc_inner.pdb #80 to 'Ai'
Remapping chain ID 'C' in hNups_IRnuc_inner.pdb #80 to 'Aj'
Remapping chain ID 'D' in hNups_IRnuc_inner.pdb #80 to 'Ak'
Remapping chain ID 'E' in hNups_IRnuc_inner.pdb #80 to 'Al'
Remapping chain ID 'F' in hNups_IRnuc_inner.pdb #80 to 'Am'
Remapping chain ID 'H' in hNups_IRnuc_inner.pdb #80 to 'An'
Remapping chain ID 'I' in hNups_IRnuc_inner.pdb #80 to 'Ao'
Remapping chain ID 'J' in hNups_IRnuc_inner.pdb #80 to 'Ap'
Remapping chain ID 'U' in hNups_IRnuc_inner.pdb #80 to 'Aq'
Remapping chain ID 'A' in hNups_IRnuc_outer.pdb #81 to 'Ar'
Remapping chain ID 'B' in hNups_IRnuc_outer.pdb #81 to 'As'
Remapping chain ID 'D' in hNups_IRnuc_outer.pdb #81 to 'At'
Remapping chain ID 'F' in hNups_IRnuc_outer.pdb #81 to 'Au'
Remapping chain ID 'H' in hNups_IRnuc_outer.pdb #81 to 'Av'
Remapping chain ID 'I' in hNups_IRnuc_outer.pdb #81 to 'Aw'
Remapping chain ID 'J' in hNups_IRnuc_outer.pdb #81 to 'Ax'
Remapping chain ID 'U' in hNups_IRnuc_outer.pdb #81 to 'Ay'
> combine #55-81
Remapping chain ID 'K' in Nup133_propeller_CRouter.pdb #56 to 'L'
Remapping chain ID 'R' in Nup133_propeller_CRouter.pdb #56 to 'T'
Remapping chain ID 'S' in Nup133_propeller_CRouter.pdb #56 to 'U'
Remapping chain ID 'K' in Nup133_propeller_NRinner.pdb #57 to 'M'
Remapping chain ID 'R' in Nup133_propeller_NRinner.pdb #57 to 'V'
Remapping chain ID 'S' in Nup133_propeller_NRinner.pdb #57 to 'W'
Remapping chain ID 'T' in Nup133_propeller_NRinner.pdb #57 to 'X'
Remapping chain ID 'K' in Nup133_propeller_NRouter.pdb #58 to 'N'
Remapping chain ID 'R' in Nup133_propeller_NRouter.pdb #58 to 'Y'
Remapping chain ID 'S' in Nup133_propeller_NRouter.pdb #58 to 'Z'
Remapping chain ID 'T' in Nup133_propeller_NRouter.pdb #58 to 'a'
Remapping chain ID 'U' in Nup98_CRconnector.pdb #59 to 'b'
Remapping chain ID 'U' in Nup98_NRconnector.pdb #60 to 'c'
Remapping chain ID 'K' in Y_CRinner.pdb #61 to 'd'
Remapping chain ID 'L' in Y_CRinner.pdb #61 to 'e'
Remapping chain ID 'M' in Y_CRinner.pdb #61 to 'f'
Remapping chain ID 'N' in Y_CRinner.pdb #61 to 'g'
Remapping chain ID 'R' in Y_CRinner.pdb #61 to 'h'
Remapping chain ID 'S' in Y_CRinner.pdb #61 to 'i'
Remapping chain ID 'A' in Y_CRouter.pdb #62 to 'B'
Remapping chain ID 'C' in Y_CRouter.pdb #62 to 'D'
Remapping chain ID 'K' in Y_CRouter.pdb #62 to 'j'
Remapping chain ID 'L' in Y_CRouter.pdb #62 to 'k'
Remapping chain ID 'M' in Y_CRouter.pdb #62 to 'l'
Remapping chain ID 'N' in Y_CRouter.pdb #62 to 'm'
Remapping chain ID 'O' in Y_CRouter.pdb #62 to 'n'
Remapping chain ID 'P' in Y_CRouter.pdb #62 to 'o'
Remapping chain ID 'Q' in Y_CRouter.pdb #62 to 'p'
Remapping chain ID 'R' in Y_CRouter.pdb #62 to 'q'
Remapping chain ID 'S' in Y_CRouter.pdb #62 to 'r'
Remapping chain ID 'U' in Y_CRouter.pdb #62 to 's'
Remapping chain ID 'V' in Y_CRouter.pdb #62 to 't'
Remapping chain ID 'W' in Y_CRouter.pdb #62 to 'u'
Remapping chain ID 'K' in Y_NRinner.pdb #63 to 'v'
Remapping chain ID 'L' in Y_NRinner.pdb #63 to 'w'
Remapping chain ID 'M' in Y_NRinner.pdb #63 to 'x'
Remapping chain ID 'N' in Y_NRinner.pdb #63 to 'y'
Remapping chain ID 'O' in Y_NRinner.pdb #63 to 'z'
Remapping chain ID 'P' in Y_NRinner.pdb #63 to '1'
Remapping chain ID 'Q' in Y_NRinner.pdb #63 to '2'
Remapping chain ID 'R' in Y_NRinner.pdb #63 to '3'
Remapping chain ID 'S' in Y_NRinner.pdb #63 to '4'
Remapping chain ID 'T' in Y_NRinner.pdb #63 to '5'
Remapping chain ID 'A' in Y_NRouter.pdb #64 to 'E'
Remapping chain ID 'C' in Y_NRouter.pdb #64 to 'F'
Remapping chain ID 'K' in Y_NRouter.pdb #64 to '6'
Remapping chain ID 'L' in Y_NRouter.pdb #64 to '7'
Remapping chain ID 'M' in Y_NRouter.pdb #64 to '8'
Remapping chain ID 'N' in Y_NRouter.pdb #64 to '9'
Remapping chain ID 'O' in Y_NRouter.pdb #64 to '0'
Remapping chain ID 'P' in Y_NRouter.pdb #64 to 'AA'
Remapping chain ID 'Q' in Y_NRouter.pdb #64 to 'AB'
Remapping chain ID 'R' in Y_NRouter.pdb #64 to 'AC'
Remapping chain ID 'S' in Y_NRouter.pdb #64 to 'AD'
Remapping chain ID 'T' in Y_NRouter.pdb #64 to 'AE'
Remapping chain ID 'D' in hNup155_CRconnector_CTD.pdb #65 to 'G'
Remapping chain ID 'D' in hNup155_CRconnector_NTD.pdb #66 to 'H'
Remapping chain ID 'D' in hNup155_NRconnector_CTD.pdb #67 to 'I'
Remapping chain ID 'D' in hNup155_NRconnector_NTD.pdb #68 to 'AF'
Remapping chain ID '0' in hNup358_1_CRinner.pdb #69 to 'AG'
Remapping chain ID '0' in hNup358_1_CRouter.pdb #70 to 'AH'
Remapping chain ID '0' in hNup358_2_CRinner.pdb #71 to 'AI'
Remapping chain ID '0' in hNup358_2_CRouter.pdb #72 to 'AJ'
Remapping chain ID '0' in hNup358_CRmiddle.pdb #73 to 'AK'
Remapping chain ID 'F' in hNup53_dimer_IRcyt_innerF7.pdb #74 to 'AL'
Remapping chain ID 'F' in hNup53_dimer_IRcyt_outerG7.pdb #75 to 'AM'
Remapping chain ID 'F' in hNup53_dimer_IRnuc_innerF0.pdb #76 to 'AN'
Remapping chain ID 'F' in hNup53_dimer_IRnuc_outerG0.pdb #77 to 'AO'
Remapping chain ID '4' in hNups_IRcyt_inner.pdb #78 to 'AP'
Remapping chain ID 'A' in hNups_IRcyt_inner.pdb #78 to 'AQ'
Remapping chain ID 'C' in hNups_IRcyt_inner.pdb #78 to 'AR'
Remapping chain ID 'D' in hNups_IRcyt_inner.pdb #78 to 'AS'
Remapping chain ID 'E' in hNups_IRcyt_inner.pdb #78 to 'AT'
Remapping chain ID 'F' in hNups_IRcyt_inner.pdb #78 to 'AU'
Remapping chain ID 'H' in hNups_IRcyt_inner.pdb #78 to 'AV'
Remapping chain ID 'I' in hNups_IRcyt_inner.pdb #78 to 'AW'
Remapping chain ID 'J' in hNups_IRcyt_inner.pdb #78 to 'AX'
Remapping chain ID 'U' in hNups_IRcyt_inner.pdb #78 to 'AY'
Remapping chain ID 'A' in hNups_IRcyt_outer.pdb #79 to 'AZ'
Remapping chain ID 'B' in hNups_IRcyt_outer.pdb #79 to 'Aa'
Remapping chain ID 'D' in hNups_IRcyt_outer.pdb #79 to 'Ab'
Remapping chain ID 'F' in hNups_IRcyt_outer.pdb #79 to 'Ac'
Remapping chain ID 'H' in hNups_IRcyt_outer.pdb #79 to 'Ad'
Remapping chain ID 'I' in hNups_IRcyt_outer.pdb #79 to 'Ae'
Remapping chain ID 'J' in hNups_IRcyt_outer.pdb #79 to 'Af'
Remapping chain ID 'U' in hNups_IRcyt_outer.pdb #79 to 'Ag'
Remapping chain ID '4' in hNups_IRnuc_inner.pdb #80 to 'Ah'
Remapping chain ID 'A' in hNups_IRnuc_inner.pdb #80 to 'Ai'
Remapping chain ID 'C' in hNups_IRnuc_inner.pdb #80 to 'Aj'
Remapping chain ID 'D' in hNups_IRnuc_inner.pdb #80 to 'Ak'
Remapping chain ID 'E' in hNups_IRnuc_inner.pdb #80 to 'Al'
Remapping chain ID 'F' in hNups_IRnuc_inner.pdb #80 to 'Am'
Remapping chain ID 'H' in hNups_IRnuc_inner.pdb #80 to 'An'
Remapping chain ID 'I' in hNups_IRnuc_inner.pdb #80 to 'Ao'
Remapping chain ID 'J' in hNups_IRnuc_inner.pdb #80 to 'Ap'
Remapping chain ID 'U' in hNups_IRnuc_inner.pdb #80 to 'Aq'
Remapping chain ID 'A' in hNups_IRnuc_outer.pdb #81 to 'Ar'
Remapping chain ID 'B' in hNups_IRnuc_outer.pdb #81 to 'As'
Remapping chain ID 'D' in hNups_IRnuc_outer.pdb #81 to 'At'
Remapping chain ID 'F' in hNups_IRnuc_outer.pdb #81 to 'Au'
Remapping chain ID 'H' in hNups_IRnuc_outer.pdb #81 to 'Av'
Remapping chain ID 'I' in hNups_IRnuc_outer.pdb #81 to 'Aw'
Remapping chain ID 'J' in hNups_IRnuc_outer.pdb #81 to 'Ax'
Remapping chain ID 'U' in hNups_IRnuc_outer.pdb #81 to 'Ay'
> select #83
615326 atoms, 628295 bonds, 20 pseudobonds, 77424 residues, 2 models selected
> view matrix models
> #83,-0.70089,0.71323,-0.007761,591.85,-0.71325,-0.70091,-0.0011384,2147.2,-0.0062517,0.0047376,0.99997,-25.19
> view matrix models
> #83,-0.24609,0.96924,0.0020727,208.31,-0.95389,-0.24258,0.17676,1683.4,0.17183,0.041523,0.98425,-104.12
> select #84
615326 atoms, 628295 bonds, 20 pseudobonds, 77424 residues, 2 models selected
> view matrix models
> #84,-0.83,0.48135,0.28177,844.62,0.16075,0.69019,-0.70554,1182.3,-0.53409,-0.54031,-0.65024,2079.8
> undo
> view matrix models
> #84,-0.70089,0.71323,-0.007761,933.74,-0.71325,-0.70091,-0.0011384,1748.5,-0.0062517,0.0047376,0.99997,16.327
> view matrix models
> #84,-0.98031,0.19274,-0.042989,1505.2,-0.19151,-0.981,-0.031139,1834.8,-0.048174,-0.022293,0.99859,55.026
> select clear
> volume add #46-54
Opened volume sum as #85, grid size 112,117,59, pixel 13.3, shown at step 1,
values float32
> volume #85 color #ffffb259
> select #83
615326 atoms, 628295 bonds, 20 pseudobonds, 77424 residues, 2 models selected
> fitmap sel inMap #85
Fit molecule combination (#83) to map volume sum (#85) using 615326 atoms
average map value = 0.1161, steps = 100
shifted from previous position = 112
rotated from previous position = 18.5 degrees
atoms outside contour = 97664, contour level = 0.043111
Position of combination (#83) relative to volume sum (#85) coordinates:
Matrix rotation and translation
0.01469287 0.99986579 -0.00724779 4.86255324
-0.99985163 0.01462672 -0.00909823 1702.60226078
-0.00899100 0.00738039 0.99993235 -3.64203038
Axis 0.00824019 0.00087170 -0.99996567
Axis point 866.28827825 848.85395730 0.00000000
Rotation angle (degrees) 89.16196387
Shift along axis 5.16613046
> select #84
615326 atoms, 628295 bonds, 20 pseudobonds, 77424 residues, 2 models selected
> fitmap sel inMap #85
Fit molecule combination (#84) to map volume sum (#85) using 615326 atoms
average map value = 0.1161, steps = 100
shifted from previous position = 82.8
rotated from previous position = 11.2 degrees
atoms outside contour = 87266, contour level = 0.043111
Position of combination (#84) relative to volume sum (#85) coordinates:
Matrix rotation and translation
-0.99997563 0.00480187 -0.00506706 1708.34951623
-0.00481660 -0.99998420 0.00289974 1708.41606284
-0.00505305 0.00292408 0.99998296 -0.49897354
Axis 0.00253010 -0.00145601 -0.99999574
Axis point 856.22820429 852.15440846 0.00000000
Rotation angle (degrees) 179.72444885
Shift along axis 2.33380398
> select clear
> show #!48 models
> show #!49 models
> show #!50 models
> hide #!48 models
> show #!46 models
> hide #74 models
> show #74 models
> hide #75 models
> show #75 models
> hide #76 models
> show #76 models
> hide #77 models
> show #77 models
> hide #!84 models
> hide #!83 models
> select /F
69017 atoms, 70454 bonds, 8762 residues, 20 models selected
> select /H
46074 atoms, 46882 bonds, 2 pseudobonds, 5793 residues, 13 models selected
> show #!83 models
> show #!84 models
> hide #77 models
> show #77 models
> hide #76 models
> show #76 models
> select #74-75
1396 atoms, 1424 bonds, 178 residues, 2 models selected
> select #74,76
1396 atoms, 1424 bonds, 178 residues, 2 models selected
> select #74,77
1396 atoms, 1424 bonds, 178 residues, 2 models selected
> view matrix models
> #74,-0.70089,0.71323,-0.007761,830.43,-0.71325,-0.70091,-0.0011384,2037.5,-0.0062517,0.0047376,0.99997,14.318,#77,-0.70089,0.71323,-0.007761,830.43,-0.71325,-0.70091,-0.0011384,2037.5,-0.0062517,0.0047376,0.99997,14.318
> view matrix models
> #74,-0.70089,0.71323,-0.007761,829.06,-0.71325,-0.70091,-0.0011384,2044.8,-0.0062517,0.0047376,0.99997,-3.0441,#77,-0.70089,0.71323,-0.007761,829.06,-0.71325,-0.70091,-0.0011384,2044.8,-0.0062517,0.0047376,0.99997,-3.0441
> view matrix models
> #74,-0.70089,0.71323,-0.007761,819.5,-0.71325,-0.70091,-0.0011384,2032,-0.0062517,0.0047376,0.99997,-0.33531,#77,-0.70089,0.71323,-0.007761,819.5,-0.71325,-0.70091,-0.0011384,2032,-0.0062517,0.0047376,0.99997,-0.33531
> view matrix models
> #74,-0.64789,0.68931,-0.32416,1072.6,-0.74831,-0.49645,0.43996,1540.1,0.14234,0.52762,0.83747,-302.68,#77,-0.64789,0.68931,-0.32416,1072.6,-0.74831,-0.49645,0.43996,1540.1,0.14234,0.52762,0.83747,-302.68
> view matrix models
> #74,-0.64789,0.68931,-0.32416,1070.3,-0.74831,-0.49645,0.43996,1541.5,0.14234,0.52762,0.83747,-308.49,#77,-0.64789,0.68931,-0.32416,1070.3,-0.74831,-0.49645,0.43996,1541.5,0.14234,0.52762,0.83747,-308.49
> select #75,76
1396 atoms, 1424 bonds, 178 residues, 2 models selected
> view matrix models
> #75,-0.70089,0.71323,-0.007761,1052.9,-0.71325,-0.70091,-0.0011384,1755.7,-0.0062517,0.0047376,0.99997,3.8728,#76,-0.70089,0.71323,-0.007761,1052.9,-0.71325,-0.70091,-0.0011384,1755.7,-0.0062517,0.0047376,0.99997,3.8728
> view matrix models
> #75,-0.98807,0.050195,0.14559,1478.5,-0.064673,-0.99323,-0.096475,1825.9,0.13977,-0.10474,0.98463,45.429,#76,-0.98807,0.050195,0.14559,1478.5,-0.064673,-0.99323,-0.096475,1825.9,0.13977,-0.10474,0.98463,45.429
> view matrix models
> #75,-0.96518,-0.018581,0.26094,1418.7,-0.005224,-0.99591,-0.090238,1802.5,0.26155,-0.088459,0.96113,13.856,#76,-0.96518,-0.018581,0.26094,1418.7,-0.005224,-0.99591,-0.090238,1802.5,0.26155,-0.088459,0.96113,13.856
> view matrix models
> #75,-0.96518,-0.018581,0.26094,1411.5,-0.005224,-0.99591,-0.090238,1799.8,0.26155,-0.088459,0.96113,21.781,#76,-0.96518,-0.018581,0.26094,1411.5,-0.005224,-0.99591,-0.090238,1799.8,0.26155,-0.088459,0.96113,21.781
> view matrix models
> #75,-0.96518,-0.018581,0.26094,1412.8,-0.005224,-0.99591,-0.090238,1804.3,0.26155,-0.088459,0.96113,19.107,#76,-0.96518,-0.018581,0.26094,1412.8,-0.005224,-0.99591,-0.090238,1804.3,0.26155,-0.088459,0.96113,19.107
> view matrix models
> #75,-0.96518,-0.018581,0.26094,1168.9,-0.005224,-0.99591,-0.090238,2052.5,0.26155,-0.088459,0.96113,30.38,#76,-0.96518,-0.018581,0.26094,1168.9,-0.005224,-0.99591,-0.090238,2052.5,0.26155,-0.088459,0.96113,30.38
> view sel
> view matrix models
> #75,-0.96518,-0.018581,0.26094,1156.3,-0.005224,-0.99591,-0.090238,2066.9,0.26155,-0.088459,0.96113,21.365,#76,-0.96518,-0.018581,0.26094,1156.3,-0.005224,-0.99591,-0.090238,2066.9,0.26155,-0.088459,0.96113,21.365
> view matrix models
> #75,-0.54156,0.38208,0.74882,311.16,0.019679,-0.88474,0.46567,1498.4,0.84043,0.26692,0.47162,6.0024,#76,-0.54156,0.38208,0.74882,311.16,0.019679,-0.88474,0.46567,1498.4,0.84043,0.26692,0.47162,6.0024
> view matrix models
> #75,-0.54156,0.38208,0.74882,315.33,0.019679,-0.88474,0.46567,1502.4,0.84043,0.26692,0.47162,5.7292,#76,-0.54156,0.38208,0.74882,315.33,0.019679,-0.88474,0.46567,1502.4,0.84043,0.26692,0.47162,5.7292
> view matrix models
> #75,-0.41864,0.34742,0.83907,219.83,0.10623,-0.89885,0.42518,1518.7,0.90192,0.26714,0.33939,100.06,#76,-0.41864,0.34742,0.83907,219.83,0.10623,-0.89885,0.42518,1518.7,0.90192,0.26714,0.33939,100.06
> view
> select clear
> hide #74 models
> show #74 models
> hide #76 models
> show #76 models
> hide #77 models
> show #77 models
> hide #76 models
> show #76 models
> hide #75 models
> show #75 models
> hide #74 models
> show #74 models
> volume #46 level 0.0236
> volume #46 level 0.01898
> hide #!84 models
> hide #!83 models
> view
> hide #!78 models
> show #!78 models
> hide #55-60,69-77#!61-68 target m
> save /Users/kosinski/Desktop/FluNPC_paper/cutting_rigid_bodies.cxs
> includeMaps true
> show #74-77 target m
> select #74-77/F
2792 atoms, 2848 bonds, 356 residues, 4 models selected
> select #74-77/F/G
2792 atoms, 2848 bonds, 356 residues, 4 models selected
> select #78-81/F
7348 atoms, 7528 bonds, 964 residues, 4 models selected
> select ~sel & ##selected
166300 atoms, 169546 bonds, 8 pseudobonds, 20920 residues, 8 models selected
> select ~sel & ##selected
7348 atoms, 7528 bonds, 964 residues, 4 models selected
> hide #!50 models
> show #!50 models
> hide #!46 models
> hide #!49 models
> show #!49 models
> hide #!50 models
> select #78-81/F:101-285
5588 atoms, 5724 bonds, 740 residues, 4 models selected
> show sel atoms
> hide sel atoms
> select #78-81/F:101-326\
6912 atoms, 7080 bonds, 904 residues, 4 models selected
> select #78-81/F:101-326
6912 atoms, 7080 bonds, 904 residues, 4 models selected
> select #78-81/F:101-286
5620 atoms, 5756 bonds, 744 residues, 4 models selected
> show sel atoms
> hide sel atoms
> select #78-81/F:101-285
5588 atoms, 5724 bonds, 740 residues, 4 models selected
> show sel atoms
> select ~sel & ##selected
168060 atoms, 171350 bonds, 8 pseudobonds, 21144 residues, 8 models selected
> select ~sel & ##selected
5588 atoms, 5724 bonds, 740 residues, 4 models selected
> hide sel atoms
> select ~sel & ##selected
168060 atoms, 171350 bonds, 8 pseudobonds, 21144 residues, 8 models selected
> show sel atoms
> hide sel atoms
> cd /Users/kosinski/Desktop/FluNPC_paper/cutting_rigid_bodies
Current working directory is:
/Users/kosinski/Desktop/FluNPC_paper/cutting_rigid_bodies
> save /Users/kosinski/Desktop/FluNPC_paper/cutting_rigid_bodies/[NAME].pdb
> models #74-81 selectedOnly true relModel #82
> open /Users/kosinski/Desktop/FluNPC_paper/cutting_rigid_bodies/*.pdb
Summary of feedback from opening
/Users/kosinski/Desktop/FluNPC_paper/cutting_rigid_bodies/hNups_IRcyt_inner.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 209 209 GLN F 183 ALA F 194 1 12
Start residue of secondary structure not found: HELIX 210 210 GLN F 220 LEU F
225 1 6
Start residue of secondary structure not found: HELIX 211 211 SER F 247 GLU F
250 1 4
Start residue of secondary structure not found: SHEET 79 79 1 TRP F 175 PHE F
179 0
Start residue of secondary structure not found: SHEET 80 80 1 ILE F 199 MET F
204 0
3 messages similar to the above omitted
Summary of feedback from opening
/Users/kosinski/Desktop/FluNPC_paper/cutting_rigid_bodies/hNups_IRcyt_outer.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 158 158 GLN F 183 TYR F 196 1 14
Start residue of secondary structure not found: HELIX 159 159 LYS F 218 LYS F
227 1 10
Start residue of secondary structure not found: HELIX 160 160 LYS F 246 GLU F
250 1 5
Start residue of secondary structure not found: SHEET 51 51 1 TRP F 175 PHE F
179 0
Start residue of secondary structure not found: SHEET 52 52 1 ILE F 199 MET F
204 0
2 messages similar to the above omitted
Summary of feedback from opening
/Users/kosinski/Desktop/FluNPC_paper/cutting_rigid_bodies/hNups_IRnuc_inner.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 204 204 GLN F 183 ALA F 194 1 12
Start residue of secondary structure not found: HELIX 205 205 GLN F 220 LEU F
225 1 6
Start residue of secondary structure not found: HELIX 206 206 LYS F 246 GLU F
250 1 5
Start residue of secondary structure not found: SHEET 77 77 1 TRP F 175 PHE F
179 0
Start residue of secondary structure not found: SHEET 78 78 1 ILE F 199 MET F
204 0
3 messages similar to the above omitted
Summary of feedback from opening
/Users/kosinski/Desktop/FluNPC_paper/cutting_rigid_bodies/hNups_IRnuc_outer.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 159 159 GLN F 183 TYR F 196 1 14
Start residue of secondary structure not found: HELIX 160 160 LYS F 218 LYS F
227 1 10
Start residue of secondary structure not found: HELIX 161 161 LYS F 246 GLU F
250 1 5
Start residue of secondary structure not found: SHEET 51 51 1 TRP F 175 PHE F
179 0
Start residue of secondary structure not found: SHEET 52 52 1 ILE F 199 MET F
204 0
2 messages similar to the above omitted
Chain information for hNups_IRcyt_inner.pdb.pdb #86
---
Chain | Description
4 | No description available
A | No description available
C | No description available
D | No description available
E | No description available
F | No description available
H | No description available
I | No description available
J | No description available
U | No description available
Chain information for hNups_IRcyt_outer.pdb.pdb #87
---
Chain | Description
A | No description available
B | No description available
D | No description available
F | No description available
H | No description available
I | No description available
J | No description available
U | No description available
Chain information for hNups_IRnuc_inner.pdb.pdb #88
---
Chain | Description
4 | No description available
A | No description available
C | No description available
D | No description available
E | No description available
F | No description available
H | No description available
I | No description available
J | No description available
U | No description available
Chain information for hNups_IRnuc_outer.pdb.pdb #89
---
Chain | Description
A | No description available
B | No description available
D | No description available
F | No description available
H | No description available
I | No description available
J | No description available
U | No description available
> close #86-89
> save /Users/kosinski/Desktop/FluNPC_paper/cutting_rigid_bodies/[NAME].pdb
> models #74-77 selectedOnly false relModel #82
> open /Users/kosinski/Desktop/FluNPC_paper/cutting_rigid_bodies/*.pdb
Summary of feedback from opening
/Users/kosinski/Desktop/FluNPC_paper/cutting_rigid_bodies/hNups_IRcyt_inner.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 209 209 GLN F 183 ALA F 194 1 12
Start residue of secondary structure not found: HELIX 210 210 GLN F 220 LEU F
225 1 6
Start residue of secondary structure not found: HELIX 211 211 SER F 247 GLU F
250 1 4
Start residue of secondary structure not found: SHEET 79 79 1 TRP F 175 PHE F
179 0
Start residue of secondary structure not found: SHEET 80 80 1 ILE F 199 MET F
204 0
3 messages similar to the above omitted
Summary of feedback from opening
/Users/kosinski/Desktop/FluNPC_paper/cutting_rigid_bodies/hNups_IRcyt_outer.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 158 158 GLN F 183 TYR F 196 1 14
Start residue of secondary structure not found: HELIX 159 159 LYS F 218 LYS F
227 1 10
Start residue of secondary structure not found: HELIX 160 160 LYS F 246 GLU F
250 1 5
Start residue of secondary structure not found: SHEET 51 51 1 TRP F 175 PHE F
179 0
Start residue of secondary structure not found: SHEET 52 52 1 ILE F 199 MET F
204 0
2 messages similar to the above omitted
Summary of feedback from opening
/Users/kosinski/Desktop/FluNPC_paper/cutting_rigid_bodies/hNups_IRnuc_inner.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 204 204 GLN F 183 ALA F 194 1 12
Start residue of secondary structure not found: HELIX 205 205 GLN F 220 LEU F
225 1 6
Start residue of secondary structure not found: HELIX 206 206 LYS F 246 GLU F
250 1 5
Start residue of secondary structure not found: SHEET 77 77 1 TRP F 175 PHE F
179 0
Start residue of secondary structure not found: SHEET 78 78 1 ILE F 199 MET F
204 0
3 messages similar to the above omitted
Summary of feedback from opening
/Users/kosinski/Desktop/FluNPC_paper/cutting_rigid_bodies/hNups_IRnuc_outer.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 159 159 GLN F 183 TYR F 196 1 14
Start residue of secondary structure not found: HELIX 160 160 LYS F 218 LYS F
227 1 10
Start residue of secondary structure not found: HELIX 161 161 LYS F 246 GLU F
250 1 5
Start residue of secondary structure not found: SHEET 51 51 1 TRP F 175 PHE F
179 0
Start residue of secondary structure not found: SHEET 52 52 1 ILE F 199 MET F
204 0
2 messages similar to the above omitted
Chain information for hNup53_dimer_IRcyt_innerF7.pdb.pdb #86
---
Chain | Description
F | No description available
Chain information for hNup53_dimer_IRcyt_outerG7.pdb.pdb #87
---
Chain | Description
F | No description available
Chain information for hNup53_dimer_IRnuc_innerF0.pdb.pdb #88
---
Chain | Description
F | No description available
Chain information for hNup53_dimer_IRnuc_outerG0.pdb.pdb #89
---
Chain | Description
F | No description available
Chain information for hNups_IRcyt_inner.pdb.pdb #90
---
Chain | Description
4 | No description available
A | No description available
C | No description available
D | No description available
E | No description available
F | No description available
H | No description available
I | No description available
J | No description available
U | No description available
Chain information for hNups_IRcyt_outer.pdb.pdb #91
---
Chain | Description
A | No description available
B | No description available
D | No description available
F | No description available
H | No description available
I | No description available
J | No description available
U | No description available
Chain information for hNups_IRnuc_inner.pdb.pdb #92
---
Chain | Description
4 | No description available
A | No description available
C | No description available
D | No description available
E | No description available
F | No description available
H | No description available
I | No description available
J | No description available
U | No description available
Chain information for hNups_IRnuc_outer.pdb.pdb #93
---
Chain | Description
A | No description available
B | No description available
D | No description available
F | No description available
H | No description available
I | No description available
J | No description available
U | No description available
> select #90-93
168060 atoms, 171342 bonds, 12 pseudobonds, 21144 residues, 8 models selected
> show sel atoms
[Repeated 1 time(s)]
> select #86-89
2792 atoms, 2848 bonds, 356 residues, 4 models selected
> show sel atoms
> hide sel atoms
> show sel cartoons
> hide sel atoms
[Repeated 1 time(s)]
> show sel cartoons
> hide #74-77#!78-81 target m
> select clear
> hide #86-89#!90-93 atoms
> show #86-89#!90-93 cartoons
> show #!85 models
> volume #85 level 0.09874
> select #90-93
168060 atoms, 171342 bonds, 12 pseudobonds, 21144 residues, 8 models selected
> fitmap sel inMap #85
Fit molecules hNups_IRcyt_inner.pdb.pdb (#90), hNups_IRcyt_outer.pdb.pdb
(#91), hNups_IRnuc_inner.pdb.pdb (#92), hNups_IRnuc_outer.pdb.pdb (#93) to map
volume sum (#85) using 168060 atoms
average map value = 0.1773, steps = 64
shifted from previous position = 2.77
rotated from previous position = 1.84 degrees
atoms outside contour = 23247, contour level = 0.098742
Position of hNups_IRcyt_inner.pdb.pdb (#90) relative to volume sum (#85)
coordinates:
Matrix rotation and translation
0.99985504 0.01596025 0.00593121 -21.69409987
-0.01611554 0.99950209 0.02712675 -0.78476903
-0.00549530 -0.02721840 0.99961441 39.11279950
Axis -0.84740518 0.17817377 -0.50015854
Axis point 0.00000000 1412.11127299 46.18721422
Rotation angle (degrees) 1.83754000
Shift along axis -1.31873314
Position of hNups_IRcyt_outer.pdb.pdb (#91) relative to volume sum (#85)
coordinates:
Matrix rotation and translation
0.99985504 0.01596025 0.00593121 -21.69409987
-0.01611554 0.99950209 0.02712675 -0.78476903
-0.00549530 -0.02721840 0.99961441 39.11279950
Axis -0.84740518 0.17817377 -0.50015854
Axis point 0.00000000 1412.11127299 46.18721422
Rotation angle (degrees) 1.83754000
Shift along axis -1.31873314
Position of hNups_IRnuc_inner.pdb.pdb (#92) relative to volume sum (#85)
coordinates:
Matrix rotation and translation
0.99985504 0.01596025 0.00593121 -21.69409987
-0.01611554 0.99950209 0.02712675 -0.78476903
-0.00549530 -0.02721840 0.99961441 39.11279950
Axis -0.84740518 0.17817377 -0.50015854
Axis point 0.00000000 1412.11127299 46.18721422
Rotation angle (degrees) 1.83754000
Shift along axis -1.31873314
Position of hNups_IRnuc_outer.pdb.pdb (#93) relative to volume sum (#85)
coordinates:
Matrix rotation and translation
0.99985504 0.01596025 0.00593121 -21.69409987
-0.01611554 0.99950209 0.02712675 -0.78476903
-0.00549530 -0.02721840 0.99961441 39.11279950
Axis -0.84740518 0.17817377 -0.50015854
Axis point 0.00000000 1412.11127299 46.18721422
Rotation angle (degrees) 1.83754000
Shift along axis -1.31873314
> select clear
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> close #86-89#90-93
> show #!28 models
> show #!28 atoms
> hide #!28 atoms
> show #!28 cartoons
> hide #!49 models
> show #!49 models
> hide #!28 models
> show #!66 models
> show #!68 models
> show #74-77#!78-81 target m
> select #66,68:1-862
12208 atoms, 12454 bonds, 2 pseudobonds, 1566 residues, 4 models selected
> show sel atoms
> style sel sphere
Changed 12208 atom styles
> hide sel atoms
> volume #85 level 0.1636
> volume #85 level 0.1335
> show #!65 models
> open 7R5J
7r5j title:
Human nuclear pore complex (dilated) [more info...]
Chain information for 7r5j #86
---
Chain | Description | UniProt
00 01 02 03 04 | E3 SUMO-protein ligase RanBP2 | RBP2_HUMAN 1-3224
10 11 12 13 14 15 16 17 | Nuclear pore membrane glycoprotein 210 | PO210_HUMAN 1-1887
40 41 | Aladin | AAAS_HUMAN 1-546
A0 A1 A2 A3 A4 A5 A6 | Nuclear pore complex protein Nup93 | NUP93_HUMAN 1-819
B0 B1 | Nucleoporin NUP188 homolog | NU188_HUMAN 1-1749
C0 C1 C2 C3 C4 | Nuclear pore complex protein Nup205 | NU205_HUMAN 1-2012
D0 D1 D2 D3 D4 D5 | Nuclear pore complex protein Nup155 | NU155_HUMAN 1-1391
E0 E1 | Nucleoporin NDC1 | NDC1_HUMAN 1-674
F0 F1 F2 F3 | Nucleoporin NUP35 | NUP35_HUMAN 1-326
H0 H1 H2 H3 | Nucleoporin p54 | NUP54_HUMAN 1-507
I0 I1 I2 I3 | Nucleoporin p58/p45 | NUP58_HUMAN 1-599
J0 J1 J2 J3 J4 | Nuclear pore glycoprotein p62 | NUP62_HUMAN 1-522
K0 K1 K2 K3 | Nuclear pore complex protein Nup133 | NU133_HUMAN 1-1156
L0 L1 L2 L3 | Nuclear pore complex protein Nup107 | NU107_HUMAN 1-925
M0 M1 M2 M3 | Nuclear pore complex protein Nup96 | NUP98_HUMAN 1-937
N0 N1 N2 N3 | Protein SEC13 homolog | SEC13_HUMAN 1-322
O0 O1 O2 O3 | Nucleoporin SEH1 | SEH1_HUMAN 1-360
P0 P1 P2 P3 | Nuclear pore complex protein Nup85 | NUP85_HUMAN 1-656
Q0 Q1 Q2 Q3 | Nucleoporin Nup43 | NUP43_HUMAN 1-380
R0 R1 R2 R3 | Nuclear pore complex protein Nup160 | NU160_HUMAN 1-1436
S0 S1 S2 S3 | Nucleoporin Nup37 | NUP37_HUMAN 1-326
T0 T1 | Protein ELYS | ELYS_HUMAN 1-2266
U0 U1 U2 U3 U4 U5 U6 | Nuclear pore complex protein Nup98 | NUP98_HUMAN 1-880
V0 | Nuclear pore complex protein Nup214 | NU214_HUMAN 1-2090
W0 | Nuclear pore complex protein Nup88 | NUP88_HUMAN 1-741
7r5j mmCIF Assemblies
---
1| author_and_software_defined_assembly
> select clear
> hide #74-77#!65-66,68,78-81,86 atoms
> show #74-77#!65-66,68,78-81,86 cartoons
> select #86
617133 atoms, 630097 bonds, 18 pseudobonds, 78030 residues, 2 models selected
> view matrix models
> #86,-0.38582,0.91584,-0.11124,-282.41,-0.91597,-0.39466,-0.072418,2098.8,-0.11023,0.073955,0.99115,-23.73
> view matrix models
> #86,-0.38582,0.91584,-0.11124,528.9,-0.91597,-0.39466,-0.072418,2191.3,-0.11023,0.073955,0.99115,-17.369
> view matrix models
> #86,-0.38582,0.91584,-0.11124,455.87,-0.91597,-0.39466,-0.072418,2122.8,-0.11023,0.073955,0.99115,-118.67
> fitmap sel inMap #85
Fit molecule 7r5j (#86) to map volume sum (#85) using 617133 atoms
average map value = 0.06963, steps = 108
shifted from previous position = 104
rotated from previous position = 11 degrees
atoms outside contour = 431670, contour level = 0.13351
Position of 7r5j (#86) relative to volume sum (#85) coordinates:
Matrix rotation and translation
-0.34313373 0.93864088 0.03482166 334.39503325
-0.92486201 -0.33115991 -0.18698499 2244.32948006
-0.16398021 -0.09636608 0.98174542 86.93675277
Axis 0.04829745 0.10595608 -0.99319719
Axis point 950.40314592 1012.33435420 0.00000000
Rotation angle (degrees) 110.25959152
Shift along axis 167.60544045
> select clear
> hide #!85 models
> hide #!86 models
> show #!86 models
> mmaker #86/B0 to #79/B
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker hNups_IRcyt_outer.pdb, chain B (#79) with 7r5j, chain B0 (#86),
sequence alignment score = 9105.5
RMSD between 1748 pruned atom pairs is 0.000 angstroms; (across all 1748
pairs: 0.000)
> hide #!86 models
> show #!86 models
> hide #!86 models
> show #!86 models
> hide #!86 models
> show #!86 models
> close #86
> show #!85 models
> volume #85 level 0.1579
> select #66/D:1-862
6104 atoms, 6227 bonds, 1 pseudobond, 783 residues, 2 models selected
> show sel atoms
> select #66,68/D:1-862
12208 atoms, 12454 bonds, 2 pseudobonds, 1566 residues, 4 models selected
> hide sel atoms
> save /Users/kosinski/Desktop/FluNPC_paper/cutting_rigid_bodies/[NAME].pdb
> models #66,68 selectedOnly true relModel #82
> select #65,67/D:869-10000
8426 atoms, 8584 bonds, 1046 residues, 2 models selected
> show #!67 models
> show sel atoms
> style sel sphere
Changed 8426 atom styles
> save /Users/kosinski/Desktop/FluNPC_paper/cutting_rigid_bodies/[NAME].pdb
> models #65,67 selectedOnly true relModel #82
> hide sel atoms
> select clear
> open *pdb
Summary of feedback from opening hNup155_CRconnector_CTD.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 ALA D 12 MET D 39 1 28
Start residue of secondary structure not found: HELIX 2 2 LEU D 43 LEU D 46 1
4
Start residue of secondary structure not found: HELIX 3 3 ASP D 62 ASP D 64 1
3
Start residue of secondary structure not found: HELIX 4 4 PRO D 91 GLY D 98 1
8
Start residue of secondary structure not found: HELIX 5 5 PRO D 110 ILE D 112
1 3
52 messages similar to the above omitted
Summary of feedback from opening hNup155_CRconnector_NTD.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 24 24 THR D 869 GLN D 886 1 18
Start residue of secondary structure not found: HELIX 25 25 LYS D 890 GLN D
910 1 21
Start residue of secondary structure not found: HELIX 26 26 LEU D 913 VAL D
923 1 11
Start residue of secondary structure not found: HELIX 27 27 TYR D 926 GLU D
938 1 13
Start residue of secondary structure not found: HELIX 28 28 LEU D 945 HIS D
952 1 8
23 messages similar to the above omitted
Summary of feedback from opening hNup155_NRconnector_CTD.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 ALA D 12 MET D 39 1 28
Start residue of secondary structure not found: HELIX 2 2 LEU D 43 LEU D 46 1
4
Start residue of secondary structure not found: HELIX 3 3 ASP D 62 ASP D 64 1
3
Start residue of secondary structure not found: HELIX 4 4 PRO D 91 GLY D 98 1
8
Start residue of secondary structure not found: HELIX 5 5 PRO D 110 ILE D 112
1 3
52 messages similar to the above omitted
Summary of feedback from opening hNup155_NRconnector_NTD.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 24 24 THR D 869 GLN D 886 1 18
Start residue of secondary structure not found: HELIX 25 25 LYS D 890 GLN D
910 1 21
Start residue of secondary structure not found: HELIX 26 26 LEU D 913 VAL D
923 1 11
Start residue of secondary structure not found: HELIX 27 27 TYR D 926 GLU D
938 1 13
Start residue of secondary structure not found: HELIX 28 28 LEU D 945 HIS D
952 1 8
23 messages similar to the above omitted
Summary of feedback from opening hNups_IRcyt_inner.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 209 209 GLN F 183 ALA F 194 1 12
Start residue of secondary structure not found: HELIX 210 210 GLN F 220 LEU F
225 1 6
Start residue of secondary structure not found: HELIX 211 211 SER F 247 GLU F
250 1 4
Start residue of secondary structure not found: SHEET 79 79 1 TRP F 175 PHE F
179 0
Start residue of secondary structure not found: SHEET 80 80 1 ILE F 199 MET F
204 0
3 messages similar to the above omitted
Summary of feedback from opening hNups_IRcyt_outer.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 158 158 GLN F 183 TYR F 196 1 14
Start residue of secondary structure not found: HELIX 159 159 LYS F 218 LYS F
227 1 10
Start residue of secondary structure not found: HELIX 160 160 LYS F 246 GLU F
250 1 5
Start residue of secondary structure not found: SHEET 51 51 1 TRP F 175 PHE F
179 0
Start residue of secondary structure not found: SHEET 52 52 1 ILE F 199 MET F
204 0
2 messages similar to the above omitted
Summary of feedback from opening hNups_IRnuc_inner.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 204 204 GLN F 183 ALA F 194 1 12
Start residue of secondary structure not found: HELIX 205 205 GLN F 220 LEU F
225 1 6
Start residue of secondary structure not found: HELIX 206 206 LYS F 246 GLU F
250 1 5
Start residue of secondary structure not found: SHEET 77 77 1 TRP F 175 PHE F
179 0
Start residue of secondary structure not found: SHEET 78 78 1 ILE F 199 MET F
204 0
3 messages similar to the above omitted
Summary of feedback from opening hNups_IRnuc_outer.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 159 159 GLN F 183 TYR F 196 1 14
Start residue of secondary structure not found: HELIX 160 160 LYS F 218 LYS F
227 1 10
Start residue of secondary structure not found: HELIX 161 161 LYS F 246 GLU F
250 1 5
Start residue of secondary structure not found: SHEET 51 51 1 TRP F 175 PHE F
179 0
Start residue of secondary structure not found: SHEET 52 52 1 ILE F 199 MET F
204 0
2 messages similar to the above omitted
Chain information for hNup155_CRconnector_CTD.pdb.pdb #86
---
Chain | Description
D | No description available
Chain information for hNup155_CRconnector_NTD.pdb.pdb #87
---
Chain | Description
D | No description available
Chain information for hNup155_NRconnector_CTD.pdb.pdb #88
---
Chain | Description
D | No description available
Chain information for hNup155_NRconnector_NTD.pdb.pdb #89
---
Chain | Description
D | No description available
Chain information for hNup53_dimer_IRcyt_innerF7.pdb.pdb #90
---
Chain | Description
F | No description available
Chain information for hNup53_dimer_IRcyt_outerG7.pdb.pdb #91
---
Chain | Description
F | No description available
Chain information for hNup53_dimer_IRnuc_innerF0.pdb.pdb #92
---
Chain | Description
F | No description available
Chain information for hNup53_dimer_IRnuc_outerG0.pdb.pdb #93
---
Chain | Description
F | No description available
Chain information for hNups_IRcyt_inner.pdb.pdb #94
---
Chain | Description
4 | No description available
A | No description available
C | No description available
D | No description available
E | No description available
F | No description available
H | No description available
I | No description available
J | No description available
U | No description available
Chain information for hNups_IRcyt_outer.pdb.pdb #95
---
Chain | Description
A | No description available
B | No description available
D | No description available
F | No description available
H | No description available
I | No description available
J | No description available
U | No description available
Chain information for hNups_IRnuc_inner.pdb.pdb #96
---
Chain | Description
4 | No description available
A | No description available
C | No description available
D | No description available
E | No description available
F | No description available
H | No description available
I | No description available
J | No description available
U | No description available
Chain information for hNups_IRnuc_outer.pdb.pdb #97
---
Chain | Description
A | No description available
B | No description available
D | No description available
F | No description available
H | No description available
I | No description available
J | No description available
U | No description available
> hide #74-77#!78-81 target m
> hide #!65-68 target m
> hide #!49 models
> show #!50 models
> hide #86,88,90-93#!87,89,94-97 atoms
> show #86,88,90-93#!87,89,94-97 cartoons
> volume #85 level 0.1138
> show #!63 models
> show #!64 models
> hide #88 models
> show #88 models
> select #88/D:1174
5 atoms, 4 bonds, 1 residue, 1 model selected
> fitmap #88 inMap #85
Fit molecule hNup155_NRconnector_CTD.pdb.pdb (#88) to map volume sum (#85)
using 4213 atoms
average map value = 0.2133, steps = 240
shifted from previous position = 101
rotated from previous position = 116 degrees
atoms outside contour = 27, contour level = 0.11381
Position of hNup155_NRconnector_CTD.pdb.pdb (#88) relative to volume sum (#85)
coordinates:
Matrix rotation and translation
0.85872693 -0.07234201 -0.50730138 621.45076389
0.43730034 -0.41261424 0.79907316 590.07654579
-0.26712633 -0.90802870 -0.32268777 2258.79375565
Axis -0.94961934 -0.13360356 0.28350167
Axis point 0.00000000 997.23394979 1029.25772482
Rotation angle (degrees) 115.99467040
Shift along axis -28.60619092
> select clear
> hide #88 models
> show #88 models
> show #!62 models
> show #!61 models
> open 7R5J
7r5j title:
Human nuclear pore complex (dilated) [more info...]
Chain information for 7r5j #98
---
Chain | Description | UniProt
00 01 02 03 04 | E3 SUMO-protein ligase RanBP2 | RBP2_HUMAN 1-3224
10 11 12 13 14 15 16 17 | Nuclear pore membrane glycoprotein 210 | PO210_HUMAN 1-1887
40 41 | Aladin | AAAS_HUMAN 1-546
A0 A1 A2 A3 A4 A5 A6 | Nuclear pore complex protein Nup93 | NUP93_HUMAN 1-819
B0 B1 | Nucleoporin NUP188 homolog | NU188_HUMAN 1-1749
C0 C1 C2 C3 C4 | Nuclear pore complex protein Nup205 | NU205_HUMAN 1-2012
D0 D1 D2 D3 D4 D5 | Nuclear pore complex protein Nup155 | NU155_HUMAN 1-1391
E0 E1 | Nucleoporin NDC1 | NDC1_HUMAN 1-674
F0 F1 F2 F3 | Nucleoporin NUP35 | NUP35_HUMAN 1-326
H0 H1 H2 H3 | Nucleoporin p54 | NUP54_HUMAN 1-507
I0 I1 I2 I3 | Nucleoporin p58/p45 | NUP58_HUMAN 1-599
J0 J1 J2 J3 J4 | Nuclear pore glycoprotein p62 | NUP62_HUMAN 1-522
K0 K1 K2 K3 | Nuclear pore complex protein Nup133 | NU133_HUMAN 1-1156
L0 L1 L2 L3 | Nuclear pore complex protein Nup107 | NU107_HUMAN 1-925
M0 M1 M2 M3 | Nuclear pore complex protein Nup96 | NUP98_HUMAN 1-937
N0 N1 N2 N3 | Protein SEC13 homolog | SEC13_HUMAN 1-322
O0 O1 O2 O3 | Nucleoporin SEH1 | SEH1_HUMAN 1-360
P0 P1 P2 P3 | Nuclear pore complex protein Nup85 | NUP85_HUMAN 1-656
Q0 Q1 Q2 Q3 | Nucleoporin Nup43 | NUP43_HUMAN 1-380
R0 R1 R2 R3 | Nuclear pore complex protein Nup160 | NU160_HUMAN 1-1436
S0 S1 S2 S3 | Nucleoporin Nup37 | NUP37_HUMAN 1-326
T0 T1 | Protein ELYS | ELYS_HUMAN 1-2266
U0 U1 U2 U3 U4 U5 U6 | Nuclear pore complex protein Nup98 | NUP98_HUMAN 1-880
V0 | Nuclear pore complex protein Nup214 | NU214_HUMAN 1-2090
W0 | Nuclear pore complex protein Nup88 | NUP88_HUMAN 1-741
7r5j mmCIF Assemblies
---
1| author_and_software_defined_assembly
> hide #86,88,90-93#!61-64,87,89,94-98 atoms
> show #86,88,90-93#!61-64,87,89,94-98 cartoons
> select #98
617133 atoms, 630097 bonds, 18 pseudobonds, 78030 residues, 2 models selected
> select clear
> select #98/D5 to #88/D
Expected a keyword
> mmaker #98/D5 to #88/D
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker hNup155_NRconnector_CTD.pdb.pdb, chain D (#88) with 7r5j, chain D5
(#98), sequence alignment score = 5505
RMSD between 523 pruned atom pairs is 0.001 angstroms; (across all 523 pairs:
0.001)
> close #98
> close #86,88,90-93#87,89,94-97
> show #59 models
> hide #59 models
> show #55-58 target m
> hide #55-58 target m
> select #61-64/K:70-480
12548 atoms, 12812 bonds, 1640 residues, 4 models selected
> show sel atoms
> hide sel atoms
> select #61-64/K:70-608
16508 atoms, 16840 bonds, 2152 residues, 4 models selected
> select #61-64/K:70-508
13344 atoms, 13616 bonds, 1752 residues, 4 models selected
> select ~sel & ##selected
266683 atoms, 272475 bonds, 8 pseudobonds, 33349 residues, 8 models selected
> save /Users/kosinski/Desktop/FluNPC_paper/cutting_rigid_bodies/[NAME].pdb
> models #61-64 selectedOnly true relModel #82
> show #59 models
> hide #59 models
> select clear
> show #55-58 target m
> select #55-58/K:70-508
12588 atoms, 12856 bonds, 1644 residues, 4 models selected
> show sel atoms
> style sel sphere
Changed 12588 atom styles
> hide sel atoms
> select ~sel & ##selected
74036 atoms, 75734 bonds, 9364 residues, 4 models selected
> select #55-58/K:70-480
12588 atoms, 12856 bonds, 1644 residues, 4 models selected
> show sel atoms
> save /Users/kosinski/Desktop/FluNPC_paper/cutting_rigid_bodies/[NAME].pdb
> models #55-58 selectedOnly true relModel #82
> hide sel atoms
> select #98
Nothing selected
> open *pdb
Summary of feedback from opening Nup133_propeller_CRinner.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 ILE R 67 ASN R 71 1 5
Start residue of secondary structure not found: HELIX 2 2 VAL R 89 GLY R 92 1
4
Start residue of secondary structure not found: HELIX 3 3 PRO R 169 MET R 172
1 4
Start residue of secondary structure not found: HELIX 4 4 ILE R 186 LYS R 192
1 7
Start residue of secondary structure not found: HELIX 5 5 VAL R 262 THR R 268
1 7
120 messages similar to the above omitted
Summary of feedback from opening Nup133_propeller_CRouter.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 ILE R 67 ASN R 71 1 5
Start residue of secondary structure not found: HELIX 2 2 VAL R 89 GLY R 92 1
4
Start residue of secondary structure not found: HELIX 3 3 PRO R 169 MET R 172
1 4
Start residue of secondary structure not found: HELIX 4 4 ILE R 186 LYS R 192
1 7
Start residue of secondary structure not found: HELIX 5 5 VAL R 262 THR R 268
1 7
120 messages similar to the above omitted
Summary of feedback from opening Nup133_propeller_NRinner.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 ILE R 67 ASN R 71 1 5
Start residue of secondary structure not found: HELIX 2 2 VAL R 89 GLY R 92 1
4
Start residue of secondary structure not found: HELIX 3 3 PRO R 169 MET R 172
1 4
Start residue of secondary structure not found: HELIX 4 4 ILE R 186 LYS R 192
1 7
Start residue of secondary structure not found: HELIX 5 5 VAL R 262 THR R 268
1 7
197 messages similar to the above omitted
Summary of feedback from opening Nup133_propeller_NRouter.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 ILE R 67 ASN R 71 1 5
Start residue of secondary structure not found: HELIX 2 2 VAL R 89 GLY R 92 1
4
Start residue of secondary structure not found: HELIX 3 3 PRO R 169 MET R 172
1 4
Start residue of secondary structure not found: HELIX 4 4 ILE R 186 LYS R 192
1 7
Start residue of secondary structure not found: HELIX 5 5 VAL R 262 THR R 268
1 7
197 messages similar to the above omitted
Summary of feedback from opening Y_CRinner.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 136 136 VAL K 90 THR K 97 1 8
Start residue of secondary structure not found: HELIX 137 137 THR K 134 LEU K
136 1 3
Start residue of secondary structure not found: HELIX 138 138 ALA K 153 LEU K
155 1 3
Start residue of secondary structure not found: HELIX 139 139 GLY K 250 SER K
260 1 11
Start residue of secondary structure not found: HELIX 140 140 SER K 270 LEU K
272 1 3
32 messages similar to the above omitted
Summary of feedback from opening Y_CRouter.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 136 136 VAL K 90 THR K 97 1 8
Start residue of secondary structure not found: HELIX 137 137 THR K 134 LEU K
136 1 3
Start residue of secondary structure not found: HELIX 138 138 ALA K 153 LEU K
155 1 3
Start residue of secondary structure not found: HELIX 139 139 GLY K 250 SER K
260 1 11
Start residue of secondary structure not found: HELIX 140 140 SER K 270 LEU K
272 1 3
32 messages similar to the above omitted
Summary of feedback from opening Y_NRinner.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 VAL K 90 THR K 97 1 8
Start residue of secondary structure not found: HELIX 2 2 THR K 134 LEU K 136
1 3
Start residue of secondary structure not found: HELIX 3 3 ALA K 153 LEU K 155
1 3
Start residue of secondary structure not found: HELIX 4 4 GLY K 250 SER K 260
1 11
Start residue of secondary structure not found: HELIX 5 5 SER K 270 LEU K 272
1 3
32 messages similar to the above omitted
Summary of feedback from opening Y_NRouter.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 136 136 VAL K 90 THR K 97 1 8
Start residue of secondary structure not found: HELIX 137 137 THR K 134 LEU K
136 1 3
Start residue of secondary structure not found: HELIX 138 138 ALA K 153 LEU K
155 1 3
Start residue of secondary structure not found: HELIX 139 139 GLY K 250 SER K
260 1 11
Start residue of secondary structure not found: HELIX 140 140 SER K 270 LEU K
272 1 3
32 messages similar to the above omitted
Summary of feedback from opening hNup155_CRconnector_CTD.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 ALA D 12 MET D 39 1 28
Start residue of secondary structure not found: HELIX 2 2 LEU D 43 LEU D 46 1
4
Start residue of secondary structure not found: HELIX 3 3 ASP D 62 ASP D 64 1
3
Start residue of secondary structure not found: HELIX 4 4 PRO D 91 GLY D 98 1
8
Start residue of secondary structure not found: HELIX 5 5 PRO D 110 ILE D 112
1 3
52 messages similar to the above omitted
Summary of feedback from opening hNup155_CRconnector_NTD.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 24 24 THR D 869 GLN D 886 1 18
Start residue of secondary structure not found: HELIX 25 25 LYS D 890 GLN D
910 1 21
Start residue of secondary structure not found: HELIX 26 26 LEU D 913 VAL D
923 1 11
Start residue of secondary structure not found: HELIX 27 27 TYR D 926 GLU D
938 1 13
Start residue of secondary structure not found: HELIX 28 28 LEU D 945 HIS D
952 1 8
23 messages similar to the above omitted
Summary of feedback from opening hNup155_NRconnector_CTD.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 ALA D 12 MET D 39 1 28
Start residue of secondary structure not found: HELIX 2 2 LEU D 43 LEU D 46 1
4
Start residue of secondary structure not found: HELIX 3 3 ASP D 62 ASP D 64 1
3
Start residue of secondary structure not found: HELIX 4 4 PRO D 91 GLY D 98 1
8
Start residue of secondary structure not found: HELIX 5 5 PRO D 110 ILE D 112
1 3
52 messages similar to the above omitted
Summary of feedback from opening hNup155_NRconnector_NTD.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 24 24 THR D 869 GLN D 886 1 18
Start residue of secondary structure not found: HELIX 25 25 LYS D 890 GLN D
910 1 21
Start residue of secondary structure not found: HELIX 26 26 LEU D 913 VAL D
923 1 11
Start residue of secondary structure not found: HELIX 27 27 TYR D 926 GLU D
938 1 13
Start residue of secondary structure not found: HELIX 28 28 LEU D 945 HIS D
952 1 8
23 messages similar to the above omitted
Summary of feedback from opening hNups_IRcyt_inner.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 209 209 GLN F 183 ALA F 194 1 12
Start residue of secondary structure not found: HELIX 210 210 GLN F 220 LEU F
225 1 6
Start residue of secondary structure not found: HELIX 211 211 SER F 247 GLU F
250 1 4
Start residue of secondary structure not found: SHEET 79 79 1 TRP F 175 PHE F
179 0
Start residue of secondary structure not found: SHEET 80 80 1 ILE F 199 MET F
204 0
3 messages similar to the above omitted
Summary of feedback from opening hNups_IRcyt_outer.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 158 158 GLN F 183 TYR F 196 1 14
Start residue of secondary structure not found: HELIX 159 159 LYS F 218 LYS F
227 1 10
Start residue of secondary structure not found: HELIX 160 160 LYS F 246 GLU F
250 1 5
Start residue of secondary structure not found: SHEET 51 51 1 TRP F 175 PHE F
179 0
Start residue of secondary structure not found: SHEET 52 52 1 ILE F 199 MET F
204 0
2 messages similar to the above omitted
Summary of feedback from opening hNups_IRnuc_inner.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 204 204 GLN F 183 ALA F 194 1 12
Start residue of secondary structure not found: HELIX 205 205 GLN F 220 LEU F
225 1 6
Start residue of secondary structure not found: HELIX 206 206 LYS F 246 GLU F
250 1 5
Start residue of secondary structure not found: SHEET 77 77 1 TRP F 175 PHE F
179 0
Start residue of secondary structure not found: SHEET 78 78 1 ILE F 199 MET F
204 0
3 messages similar to the above omitted
Summary of feedback from opening hNups_IRnuc_outer.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 159 159 GLN F 183 TYR F 196 1 14
Start residue of secondary structure not found: HELIX 160 160 LYS F 218 LYS F
227 1 10
Start residue of secondary structure not found: HELIX 161 161 LYS F 246 GLU F
250 1 5
Start residue of secondary structure not found: SHEET 51 51 1 TRP F 175 PHE F
179 0
Start residue of secondary structure not found: SHEET 52 52 1 ILE F 199 MET F
204 0
2 messages similar to the above omitted
Chain information for Nup133_propeller_CRinner.pdb.pdb #86
---
Chain | Description
K | No description available
Chain information for Nup133_propeller_CRouter.pdb.pdb #87
---
Chain | Description
K | No description available
Chain information for Nup133_propeller_NRinner.pdb.pdb #88
---
Chain | Description
K | No description available
Chain information for Nup133_propeller_NRouter.pdb.pdb #89
---
Chain | Description
K | No description available
Chain information for Y_CRinner.pdb.pdb #90
---
Chain | Description
A | No description available
C | No description available
K | No description available
L | No description available
M | No description available
N | No description available
O | No description available
P | No description available
Q | No description available
R | No description available
S | No description available
Chain information for Y_CRouter.pdb.pdb #91
---
Chain | Description
A | No description available
C | No description available
J | No description available
K | No description available
L | No description available
M | No description available
N | No description available
O | No description available
P | No description available
Q | No description available
R | No description available
S | No description available
U | No description available
V | No description available
W | No description available
Chain information for Y_NRinner.pdb.pdb #92
---
Chain | Description
K | No description available
L | No description available
M | No description available
N | No description available
O | No description available
P | No description available
Q | No description available
R | No description available
S | No description available
T | No description available
Chain information for Y_NRouter.pdb.pdb #93
---
Chain | Description
A | No description available
C | No description available
K | No description available
L | No description available
M | No description available
N | No description available
O | No description available
P | No description available
Q | No description available
R | No description available
S | No description available
T | No description available
Chain information for hNup155_CRconnector_CTD.pdb.pdb #94
---
Chain | Description
D | No description available
Chain information for hNup155_CRconnector_NTD.pdb.pdb #95
---
Chain | Description
D | No description available
Chain information for hNup155_NRconnector_CTD.pdb.pdb #96
---
Chain | Description
D | No description available
Chain information for hNup155_NRconnector_NTD.pdb.pdb #97
---
Chain | Description
D | No description available
Chain information for hNup53_dimer_IRcyt_innerF7.pdb.pdb #98
---
Chain | Description
F | No description available
Chain information for hNup53_dimer_IRcyt_outerG7.pdb.pdb #99
---
Chain | Description
F | No description available
Chain information for hNup53_dimer_IRnuc_innerF0.pdb.pdb #100
---
Chain | Description
F | No description available
Chain information for hNup53_dimer_IRnuc_outerG0.pdb.pdb #101
---
Chain | Description
F | No description available
Chain information for hNups_IRcyt_inner.pdb.pdb #102
---
Chain | Description
4 | No description available
A | No description available
C | No description available
D | No description available
E | No description available
F | No description available
H | No description available
I | No description available
J | No description available
U | No description available
Chain information for hNups_IRcyt_outer.pdb.pdb #103
---
Chain | Description
A | No description available
B | No description available
D | No description available
F | No description available
H | No description available
I | No description available
J | No description available
U | No description available
Chain information for hNups_IRnuc_inner.pdb.pdb #104
---
Chain | Description
4 | No description available
A | No description available
C | No description available
D | No description available
E | No description available
F | No description available
H | No description available
I | No description available
J | No description available
U | No description available
Chain information for hNups_IRnuc_outer.pdb.pdb #105
---
Chain | Description
A | No description available
B | No description available
D | No description available
F | No description available
H | No description available
I | No description available
J | No description available
U | No description available
> hide #55-58,86-89,94,96,98-101#!61-64,90-93,95,97,102-105 atoms
> show #55-58,86-89,94,96,98-101#!61-64,90-93,95,97,102-105 cartoons
> hide #55-58 target m
> hide #!61-64 target m
> show #15-19 target m
> hide #15-19 target m
> close #86-89,94,96,98-101#90-93,95,97,102-105
> show #69-73 target m
> show #!61 models
> show #!62 models
> open 7R5J
7r5j title:
Human nuclear pore complex (dilated) [more info...]
Chain information for 7r5j #86
---
Chain | Description | UniProt
00 01 02 03 04 | E3 SUMO-protein ligase RanBP2 | RBP2_HUMAN 1-3224
10 11 12 13 14 15 16 17 | Nuclear pore membrane glycoprotein 210 | PO210_HUMAN 1-1887
40 41 | Aladin | AAAS_HUMAN 1-546
A0 A1 A2 A3 A4 A5 A6 | Nuclear pore complex protein Nup93 | NUP93_HUMAN 1-819
B0 B1 | Nucleoporin NUP188 homolog | NU188_HUMAN 1-1749
C0 C1 C2 C3 C4 | Nuclear pore complex protein Nup205 | NU205_HUMAN 1-2012
D0 D1 D2 D3 D4 D5 | Nuclear pore complex protein Nup155 | NU155_HUMAN 1-1391
E0 E1 | Nucleoporin NDC1 | NDC1_HUMAN 1-674
F0 F1 F2 F3 | Nucleoporin NUP35 | NUP35_HUMAN 1-326
H0 H1 H2 H3 | Nucleoporin p54 | NUP54_HUMAN 1-507
I0 I1 I2 I3 | Nucleoporin p58/p45 | NUP58_HUMAN 1-599
J0 J1 J2 J3 J4 | Nuclear pore glycoprotein p62 | NUP62_HUMAN 1-522
K0 K1 K2 K3 | Nuclear pore complex protein Nup133 | NU133_HUMAN 1-1156
L0 L1 L2 L3 | Nuclear pore complex protein Nup107 | NU107_HUMAN 1-925
M0 M1 M2 M3 | Nuclear pore complex protein Nup96 | NUP98_HUMAN 1-937
N0 N1 N2 N3 | Protein SEC13 homolog | SEC13_HUMAN 1-322
O0 O1 O2 O3 | Nucleoporin SEH1 | SEH1_HUMAN 1-360
P0 P1 P2 P3 | Nuclear pore complex protein Nup85 | NUP85_HUMAN 1-656
Q0 Q1 Q2 Q3 | Nucleoporin Nup43 | NUP43_HUMAN 1-380
R0 R1 R2 R3 | Nuclear pore complex protein Nup160 | NU160_HUMAN 1-1436
S0 S1 S2 S3 | Nucleoporin Nup37 | NUP37_HUMAN 1-326
T0 T1 | Protein ELYS | ELYS_HUMAN 1-2266
U0 U1 U2 U3 U4 U5 U6 | Nuclear pore complex protein Nup98 | NUP98_HUMAN 1-880
V0 | Nuclear pore complex protein Nup214 | NU214_HUMAN 1-2090
W0 | Nuclear pore complex protein Nup88 | NUP88_HUMAN 1-741
7r5j mmCIF Assemblies
---
1| author_and_software_defined_assembly
> select clear
> hide #69-73#!61-62,86 atoms
> show #69-73#!61-62,86 cartoons
> close #86
> open /Users/kosinski/Downloads/Nup93_Nup358_renamed.pdb
[Repeated 2 time(s)] Chain information for Nup93_Nup358_renamed.pdb #86
---
Chain | Description
02 | No description available
A | No description available
> mmaker #85/O2
> matchmaker #85/O2
Missing required "to" argument
> mmaker #85/02 to #730
No 'to' model specified
> mmaker #85/02 to #73/0
No molecules/chains to match specified
> mmaker #86/02 to #73/0
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker hNup358_CRmiddle.pdb, chain 0 (#73) with Nup93_Nup358_renamed.pdb,
chain 02 (#86), sequence alignment score = 3961.3
RMSD between 592 pruned atom pairs is 0.212 angstroms; (across all 756 pairs:
3.437)
> hide #!85 models
> show #!85 models
> hide #86 models
> show #86 models
> hide #86 models
> show #86 models
> hide #86 models
> show #86 models
> mmaker #86/02 to #71/0
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker hNup358_2_CRinner.pdb, chain 0 (#71) with Nup93_Nup358_renamed.pdb,
chain 02 (#86), sequence alignment score = 3984.1
RMSD between 756 pruned atom pairs is 0.009 angstroms; (across all 756 pairs:
0.009)
> hide #73 models
> show #73 models
> hide #!62 models
> hide #!61 models
> hide #73 models
> hide #72 models
> hide #71 models
> hide #70 models
> hide #69 models
> show #69 models
> save /Users/kosinski/Desktop/FluNPC_paper/cutting_rigid_bodies.cxs
> includeMaps true
> save /Users/kosinski/Desktop/FluNPC_paper/cutting_rigid_bodies/[NAME].pdb
> models #69-73 relModel #82
> hide #69 models
> show #69 models
> hide #69 models
> select #86/A
5241 atoms, 5343 bonds, 650 residues, 1 model selected
> save
> /Users/kosinski/Desktop/FluNPC_paper/cutting_rigid_bodies/hNup93_CR_outer.pdb
> models #86 selectedOnly true relModel #82
> hide #86 models
> show #!62 models
> hide #!85 models
> select #62/K:70-508/A:150-10000
8728 atoms, 8901 bonds, 1108 residues, 1 model selected
> select ~sel & ##selected
70793 atoms, 72314 bonds, 2 pseudobonds, 8853 residues, 2 models selected
> save /Users/kosinski/Desktop/FluNPC_paper/cutting_rigid_bodies/[NAME].pdb
> models #62 selectedOnly true relModel #82
> open *pdb
Summary of feedback from opening Nup133_propeller_CRinner.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 ILE R 67 ASN R 71 1 5
Start residue of secondary structure not found: HELIX 2 2 VAL R 89 GLY R 92 1
4
Start residue of secondary structure not found: HELIX 3 3 PRO R 169 MET R 172
1 4
Start residue of secondary structure not found: HELIX 4 4 ILE R 186 LYS R 192
1 7
Start residue of secondary structure not found: HELIX 5 5 VAL R 262 THR R 268
1 7
120 messages similar to the above omitted
Summary of feedback from opening Nup133_propeller_CRouter.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 ILE R 67 ASN R 71 1 5
Start residue of secondary structure not found: HELIX 2 2 VAL R 89 GLY R 92 1
4
Start residue of secondary structure not found: HELIX 3 3 PRO R 169 MET R 172
1 4
Start residue of secondary structure not found: HELIX 4 4 ILE R 186 LYS R 192
1 7
Start residue of secondary structure not found: HELIX 5 5 VAL R 262 THR R 268
1 7
120 messages similar to the above omitted
Summary of feedback from opening Nup133_propeller_NRinner.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 ILE R 67 ASN R 71 1 5
Start residue of secondary structure not found: HELIX 2 2 VAL R 89 GLY R 92 1
4
Start residue of secondary structure not found: HELIX 3 3 PRO R 169 MET R 172
1 4
Start residue of secondary structure not found: HELIX 4 4 ILE R 186 LYS R 192
1 7
Start residue of secondary structure not found: HELIX 5 5 VAL R 262 THR R 268
1 7
197 messages similar to the above omitted
Summary of feedback from opening Nup133_propeller_NRouter.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 ILE R 67 ASN R 71 1 5
Start residue of secondary structure not found: HELIX 2 2 VAL R 89 GLY R 92 1
4
Start residue of secondary structure not found: HELIX 3 3 PRO R 169 MET R 172
1 4
Start residue of secondary structure not found: HELIX 4 4 ILE R 186 LYS R 192
1 7
Start residue of secondary structure not found: HELIX 5 5 VAL R 262 THR R 268
1 7
197 messages similar to the above omitted
Summary of feedback from opening Y_CRinner.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 136 136 VAL K 90 THR K 97 1 8
Start residue of secondary structure not found: HELIX 137 137 THR K 134 LEU K
136 1 3
Start residue of secondary structure not found: HELIX 138 138 ALA K 153 LEU K
155 1 3
Start residue of secondary structure not found: HELIX 139 139 GLY K 250 SER K
260 1 11
Start residue of secondary structure not found: HELIX 140 140 SER K 270 LEU K
272 1 3
32 messages similar to the above omitted
Summary of feedback from opening Y_CRouter.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 2 2 ASN A 180 VAL A 197 1 18
Start residue of secondary structure not found: HELIX 3 3 LEU A 205 VAL A 212
1 8
Start residue of secondary structure not found: HELIX 4 4 LYS A 218 THR A 231
1 14
Start residue of secondary structure not found: HELIX 5 5 ALA A 241 SER A 246
1 6
Start residue of secondary structure not found: HELIX 6 6 VAL A 248 ALA A 281
1 34
64 messages similar to the above omitted
Summary of feedback from opening Y_NRinner.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 VAL K 90 THR K 97 1 8
Start residue of secondary structure not found: HELIX 2 2 THR K 134 LEU K 136
1 3
Start residue of secondary structure not found: HELIX 3 3 ALA K 153 LEU K 155
1 3
Start residue of secondary structure not found: HELIX 4 4 GLY K 250 SER K 260
1 11
Start residue of secondary structure not found: HELIX 5 5 SER K 270 LEU K 272
1 3
32 messages similar to the above omitted
Summary of feedback from opening Y_NRouter.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 136 136 VAL K 90 THR K 97 1 8
Start residue of secondary structure not found: HELIX 137 137 THR K 134 LEU K
136 1 3
Start residue of secondary structure not found: HELIX 138 138 ALA K 153 LEU K
155 1 3
Start residue of secondary structure not found: HELIX 139 139 GLY K 250 SER K
260 1 11
Start residue of secondary structure not found: HELIX 140 140 SER K 270 LEU K
272 1 3
32 messages similar to the above omitted
Summary of feedback from opening hNup155_CRconnector_CTD.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 ALA D 12 MET D 39 1 28
Start residue of secondary structure not found: HELIX 2 2 LEU D 43 LEU D 46 1
4
Start residue of secondary structure not found: HELIX 3 3 ASP D 62 ASP D 64 1
3
Start residue of secondary structure not found: HELIX 4 4 PRO D 91 GLY D 98 1
8
Start residue of secondary structure not found: HELIX 5 5 PRO D 110 ILE D 112
1 3
52 messages similar to the above omitted
Summary of feedback from opening hNup155_CRconnector_NTD.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 24 24 THR D 869 GLN D 886 1 18
Start residue of secondary structure not found: HELIX 25 25 LYS D 890 GLN D
910 1 21
Start residue of secondary structure not found: HELIX 26 26 LEU D 913 VAL D
923 1 11
Start residue of secondary structure not found: HELIX 27 27 TYR D 926 GLU D
938 1 13
Start residue of secondary structure not found: HELIX 28 28 LEU D 945 HIS D
952 1 8
23 messages similar to the above omitted
Summary of feedback from opening hNup155_NRconnector_CTD.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 ALA D 12 MET D 39 1 28
Start residue of secondary structure not found: HELIX 2 2 LEU D 43 LEU D 46 1
4
Start residue of secondary structure not found: HELIX 3 3 ASP D 62 ASP D 64 1
3
Start residue of secondary structure not found: HELIX 4 4 PRO D 91 GLY D 98 1
8
Start residue of secondary structure not found: HELIX 5 5 PRO D 110 ILE D 112
1 3
52 messages similar to the above omitted
Summary of feedback from opening hNup155_NRconnector_NTD.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 24 24 THR D 869 GLN D 886 1 18
Start residue of secondary structure not found: HELIX 25 25 LYS D 890 GLN D
910 1 21
Start residue of secondary structure not found: HELIX 26 26 LEU D 913 VAL D
923 1 11
Start residue of secondary structure not found: HELIX 27 27 TYR D 926 GLU D
938 1 13
Start residue of secondary structure not found: HELIX 28 28 LEU D 945 HIS D
952 1 8
23 messages similar to the above omitted
Summary of feedback from opening hNup93_CR_outer.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 LYS02 5 GLY02 17 1 13
Start residue of secondary structure not found: HELIX 2 2 PRO02 22 LYS02 25 1
4
Start residue of secondary structure not found: HELIX 3 3 SER02 26 LYS02 28 1
3
Start residue of secondary structure not found: HELIX 4 4 GLY02 29 TYR02 36 1
8
Start residue of secondary structure not found: HELIX 5 5 TYR02 37 ALA02 39 1
3
46 messages similar to the above omitted
Summary of feedback from opening hNups_IRcyt_inner.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 209 209 GLN F 183 ALA F 194 1 12
Start residue of secondary structure not found: HELIX 210 210 GLN F 220 LEU F
225 1 6
Start residue of secondary structure not found: HELIX 211 211 SER F 247 GLU F
250 1 4
Start residue of secondary structure not found: SHEET 79 79 1 TRP F 175 PHE F
179 0
Start residue of secondary structure not found: SHEET 80 80 1 ILE F 199 MET F
204 0
3 messages similar to the above omitted
Summary of feedback from opening hNups_IRcyt_outer.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 158 158 GLN F 183 TYR F 196 1 14
Start residue of secondary structure not found: HELIX 159 159 LYS F 218 LYS F
227 1 10
Start residue of secondary structure not found: HELIX 160 160 LYS F 246 GLU F
250 1 5
Start residue of secondary structure not found: SHEET 51 51 1 TRP F 175 PHE F
179 0
Start residue of secondary structure not found: SHEET 52 52 1 ILE F 199 MET F
204 0
2 messages similar to the above omitted
Summary of feedback from opening hNups_IRnuc_inner.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 204 204 GLN F 183 ALA F 194 1 12
Start residue of secondary structure not found: HELIX 205 205 GLN F 220 LEU F
225 1 6
Start residue of secondary structure not found: HELIX 206 206 LYS F 246 GLU F
250 1 5
Start residue of secondary structure not found: SHEET 77 77 1 TRP F 175 PHE F
179 0
Start residue of secondary structure not found: SHEET 78 78 1 ILE F 199 MET F
204 0
3 messages similar to the above omitted
Summary of feedback from opening hNups_IRnuc_outer.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 159 159 GLN F 183 TYR F 196 1 14
Start residue of secondary structure not found: HELIX 160 160 LYS F 218 LYS F
227 1 10
Start residue of secondary structure not found: HELIX 161 161 LYS F 246 GLU F
250 1 5
Start residue of secondary structure not found: SHEET 51 51 1 TRP F 175 PHE F
179 0
Start residue of secondary structure not found: SHEET 52 52 1 ILE F 199 MET F
204 0
2 messages similar to the above omitted
Chain information for Nup133_propeller_CRinner.pdb.pdb #87
---
Chain | Description
K | No description available
Chain information for Nup133_propeller_CRouter.pdb.pdb #88
---
Chain | Description
K | No description available
Chain information for Nup133_propeller_NRinner.pdb.pdb #89
---
Chain | Description
K | No description available
Chain information for Nup133_propeller_NRouter.pdb.pdb #90
---
Chain | Description
K | No description available
Chain information for Y_CRinner.pdb.pdb #91
---
Chain | Description
A | No description available
C | No description available
K | No description available
L | No description available
M | No description available
N | No description available
O | No description available
P | No description available
Q | No description available
R | No description available
S | No description available
Chain information for Y_CRouter.pdb.pdb #92
---
Chain | Description
A | No description available
C | No description available
J | No description available
K | No description available
L | No description available
M | No description available
N | No description available
O | No description available
P | No description available
Q | No description available
R | No description available
S | No description available
U | No description available
V | No description available
W | No description available
Chain information for Y_NRinner.pdb.pdb #93
---
Chain | Description
K | No description available
L | No description available
M | No description available
N | No description available
O | No description available
P | No description available
Q | No description available
R | No description available
S | No description available
T | No description available
Chain information for Y_NRouter.pdb.pdb #94
---
Chain | Description
A | No description available
C | No description available
K | No description available
L | No description available
M | No description available
N | No description available
O | No description available
P | No description available
Q | No description available
R | No description available
S | No description available
T | No description available
Chain information for hNup155_CRconnector_CTD.pdb.pdb #95
---
Chain | Description
D | No description available
Chain information for hNup155_CRconnector_NTD.pdb.pdb #96
---
Chain | Description
D | No description available
Chain information for hNup155_NRconnector_CTD.pdb.pdb #97
---
Chain | Description
D | No description available
Chain information for hNup155_NRconnector_NTD.pdb.pdb #98
---
Chain | Description
D | No description available
Chain information for hNup358_1_CRinner.pdb.pdb #99
---
Chain | Description
0 | No description available
Chain information for hNup358_1_CRouter.pdb.pdb #100
---
Chain | Description
0 | No description available
Chain information for hNup358_2_CRinner.pdb.pdb #101
---
Chain | Description
0 | No description available
Chain information for hNup358_2_CRouter.pdb.pdb #102
---
Chain | Description
0 | No description available
Chain information for hNup358_CRmiddle.pdb.pdb #103
---
Chain | Description
0 | No description available
Chain information for hNup53_dimer_IRcyt_innerF7.pdb.pdb #104
---
Chain | Description
F | No description available
Chain information for hNup53_dimer_IRcyt_outerG7.pdb.pdb #105
---
Chain | Description
F | No description available
Chain information for hNup53_dimer_IRnuc_innerF0.pdb.pdb #106
---
Chain | Description
F | No description available
Chain information for hNup53_dimer_IRnuc_outerG0.pdb.pdb #107
---
Chain | Description
F | No description available
Chain information for hNup93_CR_outer.pdb #108
---
Chain | Description
A | No description available
Chain information for hNups_IRcyt_inner.pdb.pdb #109
---
Chain | Description
4 | No description available
A | No description available
C | No description available
D | No description available
E | No description available
F | No description available
H | No description available
I | No description available
J | No description available
U | No description available
Chain information for hNups_IRcyt_outer.pdb.pdb #110
---
Chain | Description
A | No description available
B | No description available
D | No description available
F | No description available
H | No description available
I | No description available
J | No description available
U | No description available
Chain information for hNups_IRnuc_inner.pdb.pdb #111
---
Chain | Description
4 | No description available
A | No description available
C | No description available
D | No description available
E | No description available
F | No description available
H | No description available
I | No description available
J | No description available
U | No description available
Chain information for hNups_IRnuc_outer.pdb.pdb #112
---
Chain | Description
A | No description available
B | No description available
D | No description available
F | No description available
H | No description available
I | No description available
J | No description available
U | No description available
> hide sel atoms
> select clear
> hide #87-90,95,97,99-108#!62,91-94,96,98,109-112 atoms
> show #87-90,95,97,99-108#!62,91-94,96,98,109-112 cartoons
> hide #!62 models
> hide #!50 models
> show #!85 models
> color /A* #FF004A
> color /0* #104a8e
> color /L* #FF8853
> color /P* #FF5851
> color /R* #45f248
> color /M* #533c8c
> color /B* #5F84A2
> color /C* #1b3e5c
> color /R* #1b6970
> color /T* #8df245
> color /N* #8df245
> color /O* #104a8e
> color /Q* cyan
> color /D* #ff8c69
> color /F* #b4e400
> color /I* #195d6b
> color /J* #aeff00
> color /D* #FA8072
> color /F* #8df245
> color /4* #45f248
> color /K* purple
> color /E* #159493
> color /H* #00C9CA
> color /W* #1d5a8f
> color /U* magenta
> color /V #00d948
> color /1* #002a45
> color /W* #1787e8
> color /D* #FA8072
> color /F* #b4e400
> color /S* magenta
> color /O* #FFE800
> color /U* magenta
> close #87-90,95,97,99-108#91-94,96,98,109-112
> open /Users/kosinski/Downloads/Nup93_Nup107_NR.pdb
Summary of feedback from opening /Users/kosinski/Downloads/Nup93_Nup107_NR.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 LYS00 5 GLY00 17 1 13
Start residue of secondary structure not found: HELIX 2 2 PRO00 22 LYS00 25 1
4
Start residue of secondary structure not found: HELIX 3 3 SER00 26 LYS00 28 1
3
Start residue of secondary structure not found: HELIX 4 4 GLY00 29 TYR00 36 1
8
Start residue of secondary structure not found: HELIX 5 5 TYR00 37 ALA00 39 1
3
11957 messages similar to the above omitted
Chain information for Nup93_Nup107_NR.pdb
---
Chain | Description
87.2/A6 | No description available
87.1/L3 | No description available
> show #!64 models
> close #87
> open /Users/kosinski/Downloads/Nup93_Nup107_NR_renamed.pdb
Chain information for Nup93_Nup107_NR_renamed.pdb #87
---
Chain | Description
A | No description available
L | No description available
> mmaker #87/L to #64/L
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker Y_NRouter.pdb, chain L (#64) with Nup93_Nup107_NR_renamed.pdb,
chain L (#87), sequence alignment score = 4110.4
RMSD between 782 pruned atom pairs is 0.001 angstroms; (across all 782 pairs:
0.001)
> volume #85 level 0.09642
> show #!61-64 target m
> hide #87 models
> show #87 models
> save
> /Users/kosinski/Desktop/FluNPC_paper/cutting_rigid_bodies/hNup93_NR_outer.pdb
> models #87 relModel #82
> select #87/A
5860 atoms, 5972 bonds, 726 residues, 1 model selected
> select #86/A
5241 atoms, 5343 bonds, 650 residues, 1 model selected
> save
> /Users/kosinski/Desktop/FluNPC_paper/cutting_rigid_bodies/hNup93_CR_outer.pdb
> models #86 selectedOnly true relModel #82
> select #87/A
5860 atoms, 5972 bonds, 726 residues, 1 model selected
> save
> /Users/kosinski/Desktop/FluNPC_paper/cutting_rigid_bodies/hNup93_NR_outer.pdb
> models #87 selectedOnly true relModel #82
> select #64/K:70-508/A:150-10000
8728 atoms, 8901 bonds, 1108 residues, 1 model selected
> show sel atoms
> hide sel atoms
> select ~sel & ##selected
68052 atoms, 69539 bonds, 2 pseudobonds, 8519 residues, 2 models selected
> save /Users/kosinski/Desktop/FluNPC_paper/cutting_rigid_bodies/[NAME].pdb
> models #64 selectedOnly true relModel #82
> select clear
> color /A* #FF004A
> color /0* #104a8e
> color /L* #FF8853
> color /P* #FF5851
> color /R* #45f248
> color /M* #533c8c
> color /B* #5F84A2
> color /C* #1b3e5c
> color /R* #1b6970
> color /T* #8df245
> color /N* #8df245
> color /O* #104a8e
> color /Q* cyan
> color /D* #ff8c69
> color /F* #b4e400
> color /I* #195d6b
> color /J* #aeff00
> color /D* #FA8072
> color /F* #8df245
> color /4* #45f248
> color /K* purple
> color /E* #159493
> color /H* #00C9CA
> color /W* #1d5a8f
> color /U* magenta
> color /V #00d948
> color /1* #002a45
> color /W* #1787e8
> color /D* #FA8072
> color /F* #b4e400
> color /S* magenta
> color /O* #FFE800
> color /U* magenta
> save /Users/kosinski/Desktop/FluNPC_paper/cutting_rigid_bodies.cxs
> includeMaps true
——— End of log from Sat Nov 16 19:30:18 2024 ———
opened ChimeraX session
> close #87
> open /Users/kosinski/Downloads/Nup93_Nup107_NR_renamed.pdb
Chain information for Nup93_Nup107_NR_renamed.pdb #87
---
Chain | Description
A | No description available
L | No description available
> mmaker #87/L to #64/L
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker Y_NRouter.pdb, chain L (#64) with Nup93_Nup107_NR_renamed.pdb,
chain L (#87), sequence alignment score = 4110.4
RMSD between 782 pruned atom pairs is 0.001 angstroms; (across all 782 pairs:
0.001)
> save /Users/kosinski/Desktop/FluNPC_paper/cutting_rigid_bodies.cxs
> select #87/A
5241 atoms, 5343 bonds, 650 residues, 1 model selected
> save
> /Users/kosinski/Desktop/FluNPC_paper/cutting_rigid_bodies/hNup93_NR_outer.pdb
> models #87 selectedOnly true relModel #82
> open *pdb
'*pdb' has no suffix
> cd /Users/kosinski/Desktop/FluNPC_paper/cutting_rigid_bodies
Current working directory is:
/Users/kosinski/Desktop/FluNPC_paper/cutting_rigid_bodies
> open *pdb
Summary of feedback from opening Nup133_propeller_CRinner.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 ILE R 67 ASN R 71 1 5
Start residue of secondary structure not found: HELIX 2 2 VAL R 89 GLY R 92 1
4
Start residue of secondary structure not found: HELIX 3 3 PRO R 169 MET R 172
1 4
Start residue of secondary structure not found: HELIX 4 4 ILE R 186 LYS R 192
1 7
Start residue of secondary structure not found: HELIX 5 5 VAL R 262 THR R 268
1 7
120 messages similar to the above omitted
Summary of feedback from opening Nup133_propeller_CRouter.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 ILE R 67 ASN R 71 1 5
Start residue of secondary structure not found: HELIX 2 2 VAL R 89 GLY R 92 1
4
Start residue of secondary structure not found: HELIX 3 3 PRO R 169 MET R 172
1 4
Start residue of secondary structure not found: HELIX 4 4 ILE R 186 LYS R 192
1 7
Start residue of secondary structure not found: HELIX 5 5 VAL R 262 THR R 268
1 7
120 messages similar to the above omitted
Summary of feedback from opening Nup133_propeller_NRinner.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 ILE R 67 ASN R 71 1 5
Start residue of secondary structure not found: HELIX 2 2 VAL R 89 GLY R 92 1
4
Start residue of secondary structure not found: HELIX 3 3 PRO R 169 MET R 172
1 4
Start residue of secondary structure not found: HELIX 4 4 ILE R 186 LYS R 192
1 7
Start residue of secondary structure not found: HELIX 5 5 VAL R 262 THR R 268
1 7
197 messages similar to the above omitted
Summary of feedback from opening Nup133_propeller_NRouter.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 ILE R 67 ASN R 71 1 5
Start residue of secondary structure not found: HELIX 2 2 VAL R 89 GLY R 92 1
4
Start residue of secondary structure not found: HELIX 3 3 PRO R 169 MET R 172
1 4
Start residue of secondary structure not found: HELIX 4 4 ILE R 186 LYS R 192
1 7
Start residue of secondary structure not found: HELIX 5 5 VAL R 262 THR R 268
1 7
197 messages similar to the above omitted
Summary of feedback from opening Y_CRinner.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 136 136 VAL K 90 THR K 97 1 8
Start residue of secondary structure not found: HELIX 137 137 THR K 134 LEU K
136 1 3
Start residue of secondary structure not found: HELIX 138 138 ALA K 153 LEU K
155 1 3
Start residue of secondary structure not found: HELIX 139 139 GLY K 250 SER K
260 1 11
Start residue of secondary structure not found: HELIX 140 140 SER K 270 LEU K
272 1 3
32 messages similar to the above omitted
Summary of feedback from opening Y_CRouter.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 2 2 ASN A 180 VAL A 197 1 18
Start residue of secondary structure not found: HELIX 3 3 LEU A 205 VAL A 212
1 8
Start residue of secondary structure not found: HELIX 4 4 LYS A 218 THR A 231
1 14
Start residue of secondary structure not found: HELIX 5 5 ALA A 241 SER A 246
1 6
Start residue of secondary structure not found: HELIX 6 6 VAL A 248 ALA A 281
1 34
64 messages similar to the above omitted
Summary of feedback from opening Y_NRinner.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 VAL K 90 THR K 97 1 8
Start residue of secondary structure not found: HELIX 2 2 THR K 134 LEU K 136
1 3
Start residue of secondary structure not found: HELIX 3 3 ALA K 153 LEU K 155
1 3
Start residue of secondary structure not found: HELIX 4 4 GLY K 250 SER K 260
1 11
Start residue of secondary structure not found: HELIX 5 5 SER K 270 LEU K 272
1 3
32 messages similar to the above omitted
Summary of feedback from opening Y_NRouter.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 2 2 ASN A 180 VAL A 197 1 18
Start residue of secondary structure not found: HELIX 3 3 LEU A 205 VAL A 212
1 8
Start residue of secondary structure not found: HELIX 4 4 LYS A 218 THR A 231
1 14
Start residue of secondary structure not found: HELIX 5 5 ALA A 241 SER A 246
1 6
Start residue of secondary structure not found: HELIX 6 6 VAL A 248 ALA A 281
1 34
64 messages similar to the above omitted
Summary of feedback from opening hNup155_CRconnector_CTD.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 ALA D 12 MET D 39 1 28
Start residue of secondary structure not found: HELIX 2 2 LEU D 43 LEU D 46 1
4
Start residue of secondary structure not found: HELIX 3 3 ASP D 62 ASP D 64 1
3
Start residue of secondary structure not found: HELIX 4 4 PRO D 91 GLY D 98 1
8
Start residue of secondary structure not found: HELIX 5 5 PRO D 110 ILE D 112
1 3
52 messages similar to the above omitted
Summary of feedback from opening hNup155_CRconnector_NTD.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 24 24 THR D 869 GLN D 886 1 18
Start residue of secondary structure not found: HELIX 25 25 LYS D 890 GLN D
910 1 21
Start residue of secondary structure not found: HELIX 26 26 LEU D 913 VAL D
923 1 11
Start residue of secondary structure not found: HELIX 27 27 TYR D 926 GLU D
938 1 13
Start residue of secondary structure not found: HELIX 28 28 LEU D 945 HIS D
952 1 8
23 messages similar to the above omitted
Summary of feedback from opening hNup155_NRconnector_CTD.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 ALA D 12 MET D 39 1 28
Start residue of secondary structure not found: HELIX 2 2 LEU D 43 LEU D 46 1
4
Start residue of secondary structure not found: HELIX 3 3 ASP D 62 ASP D 64 1
3
Start residue of secondary structure not found: HELIX 4 4 PRO D 91 GLY D 98 1
8
Start residue of secondary structure not found: HELIX 5 5 PRO D 110 ILE D 112
1 3
52 messages similar to the above omitted
Summary of feedback from opening hNup155_NRconnector_NTD.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 24 24 THR D 869 GLN D 886 1 18
Start residue of secondary structure not found: HELIX 25 25 LYS D 890 GLN D
910 1 21
Start residue of secondary structure not found: HELIX 26 26 LEU D 913 VAL D
923 1 11
Start residue of secondary structure not found: HELIX 27 27 TYR D 926 GLU D
938 1 13
Start residue of secondary structure not found: HELIX 28 28 LEU D 945 HIS D
952 1 8
23 messages similar to the above omitted
Summary of feedback from opening hNup93_CR_outer.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 LYS02 5 GLY02 17 1 13
Start residue of secondary structure not found: HELIX 2 2 PRO02 22 LYS02 25 1
4
Start residue of secondary structure not found: HELIX 3 3 SER02 26 LYS02 28 1
3
Start residue of secondary structure not found: HELIX 4 4 GLY02 29 TYR02 36 1
8
Start residue of secondary structure not found: HELIX 5 5 TYR02 37 ALA02 39 1
3
46 messages similar to the above omitted
Summary of feedback from opening hNup93_NR_outer.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 GLY L 147 ALA L 150 1 4
Start residue of secondary structure not found: HELIX 2 2 SER L 151 SER L 153
1 3
Start residue of secondary structure not found: HELIX 3 3 MET L 154 SER L 161
1 8
Start residue of secondary structure not found: HELIX 4 4 PHE L 162 LYS L 164
1 3
Start residue of secondary structure not found: HELIX 5 5 VAL L 170 ILE L 191
1 22
52 messages similar to the above omitted
Summary of feedback from opening hNups_IRcyt_inner.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 209 209 GLN F 183 ALA F 194 1 12
Start residue of secondary structure not found: HELIX 210 210 GLN F 220 LEU F
225 1 6
Start residue of secondary structure not found: HELIX 211 211 SER F 247 GLU F
250 1 4
Start residue of secondary structure not found: SHEET 79 79 1 TRP F 175 PHE F
179 0
Start residue of secondary structure not found: SHEET 80 80 1 ILE F 199 MET F
204 0
3 messages similar to the above omitted
Summary of feedback from opening hNups_IRcyt_outer.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 158 158 GLN F 183 TYR F 196 1 14
Start residue of secondary structure not found: HELIX 159 159 LYS F 218 LYS F
227 1 10
Start residue of secondary structure not found: HELIX 160 160 LYS F 246 GLU F
250 1 5
Start residue of secondary structure not found: SHEET 51 51 1 TRP F 175 PHE F
179 0
Start residue of secondary structure not found: SHEET 52 52 1 ILE F 199 MET F
204 0
2 messages similar to the above omitted
Summary of feedback from opening hNups_IRnuc_inner.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 204 204 GLN F 183 ALA F 194 1 12
Start residue of secondary structure not found: HELIX 205 205 GLN F 220 LEU F
225 1 6
Start residue of secondary structure not found: HELIX 206 206 LYS F 246 GLU F
250 1 5
Start residue of secondary structure not found: SHEET 77 77 1 TRP F 175 PHE F
179 0
Start residue of secondary structure not found: SHEET 78 78 1 ILE F 199 MET F
204 0
3 messages similar to the above omitted
Summary of feedback from opening hNups_IRnuc_outer.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 159 159 GLN F 183 TYR F 196 1 14
Start residue of secondary structure not found: HELIX 160 160 LYS F 218 LYS F
227 1 10
Start residue of secondary structure not found: HELIX 161 161 LYS F 246 GLU F
250 1 5
Start residue of secondary structure not found: SHEET 51 51 1 TRP F 175 PHE F
179 0
Start residue of secondary structure not found: SHEET 52 52 1 ILE F 199 MET F
204 0
2 messages similar to the above omitted
Chain information for Nup133_propeller_CRinner.pdb.pdb #88
---
Chain | Description
K | No description available
Chain information for Nup133_propeller_CRouter.pdb.pdb #89
---
Chain | Description
K | No description available
Chain information for Nup133_propeller_NRinner.pdb.pdb #90
---
Chain | Description
K | No description available
Chain information for Nup133_propeller_NRouter.pdb.pdb #91
---
Chain | Description
K | No description available
Chain information for Y_CRinner.pdb.pdb #92
---
Chain | Description
A | No description available
C | No description available
K | No description available
L | No description available
M | No description available
N | No description available
O | No description available
P | No description available
Q | No description available
R | No description available
S | No description available
Chain information for Y_CRouter.pdb.pdb #93
---
Chain | Description
A | No description available
C | No description available
J | No description available
K | No description available
L | No description available
M | No description available
N | No description available
O | No description available
P | No description available
Q | No description available
R | No description available
S | No description available
U | No description available
V | No description available
W | No description available
Chain information for Y_NRinner.pdb.pdb #94
---
Chain | Description
K | No description available
L | No description available
M | No description available
N | No description available
O | No description available
P | No description available
Q | No description available
R | No description available
S | No description available
T | No description available
Chain information for Y_NRouter.pdb.pdb #95
---
Chain | Description
A | No description available
C | No description available
K | No description available
L | No description available
M | No description available
N | No description available
O | No description available
P | No description available
Q | No description available
R | No description available
S | No description available
T | No description available
Chain information for hNup155_CRconnector_CTD.pdb.pdb #96
---
Chain | Description
D | No description available
Chain information for hNup155_CRconnector_NTD.pdb.pdb #97
---
Chain | Description
D | No description available
Chain information for hNup155_NRconnector_CTD.pdb.pdb #98
---
Chain | Description
D | No description available
Chain information for hNup155_NRconnector_NTD.pdb.pdb #99
---
Chain | Description
D | No description available
Chain information for hNup358_1_CRinner.pdb.pdb #100
---
Chain | Description
0 | No description available
Chain information for hNup358_1_CRouter.pdb.pdb #101
---
Chain | Description
0 | No description available
Chain information for hNup358_2_CRinner.pdb.pdb #102
---
Chain | Description
0 | No description available
Chain information for hNup358_2_CRouter.pdb.pdb #103
---
Chain | Description
0 | No description available
Chain information for hNup358_CRmiddle.pdb.pdb #104
---
Chain | Description
0 | No description available
Chain information for hNup53_dimer_IRcyt_innerF7.pdb.pdb #105
---
Chain | Description
F | No description available
Chain information for hNup53_dimer_IRcyt_outerG7.pdb.pdb #106
---
Chain | Description
F | No description available
Chain information for hNup53_dimer_IRnuc_innerF0.pdb.pdb #107
---
Chain | Description
F | No description available
Chain information for hNup53_dimer_IRnuc_outerG0.pdb.pdb #108
---
Chain | Description
F | No description available
Chain information for hNup93_CR_outer.pdb #109
---
Chain | Description
A | No description available
Chain information for hNup93_NR_outer.pdb #110
---
Chain | Description
A | No description available
Chain information for hNups_IRcyt_inner.pdb.pdb #111
---
Chain | Description
4 | No description available
A | No description available
C | No description available
D | No description available
E | No description available
F | No description available
H | No description available
I | No description available
J | No description available
U | No description available
Chain information for hNups_IRcyt_outer.pdb.pdb #112
---
Chain | Description
A | No description available
B | No description available
D | No description available
F | No description available
H | No description available
I | No description available
J | No description available
U | No description available
Chain information for hNups_IRnuc_inner.pdb.pdb #113
---
Chain | Description
4 | No description available
A | No description available
C | No description available
D | No description available
E | No description available
F | No description available
H | No description available
I | No description available
J | No description available
U | No description available
Chain information for hNups_IRnuc_outer.pdb.pdb #114
---
Chain | Description
A | No description available
B | No description available
D | No description available
F | No description available
H | No description available
I | No description available
J | No description available
U | No description available
> hide sel atoms
> select clear
> hide #87-91,96,98,100-110#!61-64,92-95,97,99,111-114 atoms
> show #87-91,96,98,100-110#!61-64,92-95,97,99,111-114 cartoons
> color /A* #FF004A
> color /0* #104a8e
> color /L* #FF8853
> color /P* #FF5851
> color /R* #45f248
> color /M* #533c8c
> color /B* #5F84A2
> color /C* #1b3e5c
> color /R* #1b6970
> color /T* #8df245
> color /N* #8df245
> color /O* #104a8e
> color /Q* cyan
> color /D* #ff8c69
> color /F* #b4e400
> color /I* #195d6b
> color /J* #aeff00
> color /D* #FA8072
> color /F* #8df245
> color /4* #45f248
> color /K* purple
> color /E* #159493
> color /H* #00C9CA
> color /W* #1d5a8f
> color /U* magenta
> color /V #00d948
> color /1* #002a45
> color /W* #1787e8
> color /D* #FA8072
> color /F* #b4e400
> color /S* magenta
> color /O* #FFE800
> color /U* magenta
> hide #36-38,43,55-60,69-77,86-87#!34-35,39-42,44-54,61-68,78-85 target m
> show #!85 models
> show #!5 models
> measure symmetry #5
Symmetry full.mrc: C8, center 64 64 65
> sym #88-114 #5 copies false
Nup133_propeller_CRinner.pdb.pdb mmCIF Assemblies
---
Nup133_propeller_CRouter.pdb.pdb mmCIF Assemblies
---
Nup133_propeller_NRinner.pdb.pdb mmCIF Assemblies
---
Nup133_propeller_NRouter.pdb.pdb mmCIF Assemblies
---
Y_CRinner.pdb.pdb mmCIF Assemblies
---
Y_CRouter.pdb.pdb mmCIF Assemblies
---
Y_NRinner.pdb.pdb mmCIF Assemblies
---
Y_NRouter.pdb.pdb mmCIF Assemblies
---
hNup155_CRconnector_CTD.pdb.pdb mmCIF Assemblies
---
hNup155_CRconnector_NTD.pdb.pdb mmCIF Assemblies
---
hNup155_NRconnector_CTD.pdb.pdb mmCIF Assemblies
---
hNup155_NRconnector_NTD.pdb.pdb mmCIF Assemblies
---
hNup358_1_CRinner.pdb.pdb mmCIF Assemblies
---
hNup358_1_CRouter.pdb.pdb mmCIF Assemblies
---
hNup358_2_CRinner.pdb.pdb mmCIF Assemblies
---
hNup358_2_CRouter.pdb.pdb mmCIF Assemblies
---
hNup358_CRmiddle.pdb.pdb mmCIF Assemblies
---
hNup53_dimer_IRcyt_innerF7.pdb.pdb mmCIF Assemblies
---
hNup53_dimer_IRcyt_outerG7.pdb.pdb mmCIF Assemblies
---
hNup53_dimer_IRnuc_innerF0.pdb.pdb mmCIF Assemblies
---
hNup53_dimer_IRnuc_outerG0.pdb.pdb mmCIF Assemblies
---
hNup93_CR_outer.pdb mmCIF Assemblies
---
hNup93_NR_outer.pdb mmCIF Assemblies
---
hNups_IRcyt_inner.pdb.pdb mmCIF Assemblies
---
hNups_IRcyt_outer.pdb.pdb mmCIF Assemblies
---
hNups_IRnuc_inner.pdb.pdb mmCIF Assemblies
---
hNups_IRnuc_outer.pdb.pdb mmCIF Assemblies
---
Cell requested for row 87 is out of bounds for table with 115 rows! Resizing
table model.
> sym #88-114 symmetry #5 copies false
Made 8 graphical clones for Nup133_propeller_CRinner.pdb.pdb,
Nup133_propeller_CRouter.pdb.pdb, Nup133_propeller_NRinner.pdb.pdb,
Nup133_propeller_NRouter.pdb.pdb, Y_CRinner.pdb.pdb, Y_CRouter.pdb.pdb,
Y_NRinner.pdb.pdb, Y_NRouter.pdb.pdb, hNup155_CRconnector_CTD.pdb.pdb,
hNup155_CRconnector_NTD.pdb.pdb, hNup155_NRconnector_CTD.pdb.pdb,
hNup155_NRconnector_NTD.pdb.pdb, hNup358_1_CRinner.pdb.pdb,
hNup358_1_CRouter.pdb.pdb, hNup358_2_CRinner.pdb.pdb,
hNup358_2_CRouter.pdb.pdb, hNup358_CRmiddle.pdb.pdb,
hNup53_dimer_IRcyt_innerF7.pdb.pdb, hNup53_dimer_IRcyt_outerG7.pdb.pdb,
hNup53_dimer_IRnuc_innerF0.pdb.pdb, hNup53_dimer_IRnuc_outerG0.pdb.pdb,
hNup93_CR_outer.pdb, hNup93_NR_outer.pdb, hNups_IRcyt_inner.pdb.pdb,
hNups_IRcyt_outer.pdb.pdb, hNups_IRnuc_inner.pdb.pdb,
hNups_IRnuc_outer.pdb.pdb symmetry #5
> hide #!85 models
> view
> volume #5 level 0.05507
> show #!85 models
> hide #!5 models
> hide #!85 models
> show #!5 models
> hide #114.1 models
> show #114.1 models
> close #88-91,96,98,100-110,114#92-95,97,99,111-113
> open *pdb
Summary of feedback from opening Nup133_propeller_CRinner.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 ILE R 67 ASN R 71 1 5
Start residue of secondary structure not found: HELIX 2 2 VAL R 89 GLY R 92 1
4
Start residue of secondary structure not found: HELIX 3 3 PRO R 169 MET R 172
1 4
Start residue of secondary structure not found: HELIX 4 4 ILE R 186 LYS R 192
1 7
Start residue of secondary structure not found: HELIX 5 5 VAL R 262 THR R 268
1 7
120 messages similar to the above omitted
Summary of feedback from opening Nup133_propeller_CRouter.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 ILE R 67 ASN R 71 1 5
Start residue of secondary structure not found: HELIX 2 2 VAL R 89 GLY R 92 1
4
Start residue of secondary structure not found: HELIX 3 3 PRO R 169 MET R 172
1 4
Start residue of secondary structure not found: HELIX 4 4 ILE R 186 LYS R 192
1 7
Start residue of secondary structure not found: HELIX 5 5 VAL R 262 THR R 268
1 7
120 messages similar to the above omitted
Summary of feedback from opening Nup133_propeller_NRinner.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 ILE R 67 ASN R 71 1 5
Start residue of secondary structure not found: HELIX 2 2 VAL R 89 GLY R 92 1
4
Start residue of secondary structure not found: HELIX 3 3 PRO R 169 MET R 172
1 4
Start residue of secondary structure not found: HELIX 4 4 ILE R 186 LYS R 192
1 7
Start residue of secondary structure not found: HELIX 5 5 VAL R 262 THR R 268
1 7
197 messages similar to the above omitted
Summary of feedback from opening Nup133_propeller_NRouter.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 ILE R 67 ASN R 71 1 5
Start residue of secondary structure not found: HELIX 2 2 VAL R 89 GLY R 92 1
4
Start residue of secondary structure not found: HELIX 3 3 PRO R 169 MET R 172
1 4
Start residue of secondary structure not found: HELIX 4 4 ILE R 186 LYS R 192
1 7
Start residue of secondary structure not found: HELIX 5 5 VAL R 262 THR R 268
1 7
197 messages similar to the above omitted
Summary of feedback from opening Y_CRinner.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 136 136 VAL K 90 THR K 97 1 8
Start residue of secondary structure not found: HELIX 137 137 THR K 134 LEU K
136 1 3
Start residue of secondary structure not found: HELIX 138 138 ALA K 153 LEU K
155 1 3
Start residue of secondary structure not found: HELIX 139 139 GLY K 250 SER K
260 1 11
Start residue of secondary structure not found: HELIX 140 140 SER K 270 LEU K
272 1 3
32 messages similar to the above omitted
Summary of feedback from opening Y_CRouter.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 2 2 ASN A 180 VAL A 197 1 18
Start residue of secondary structure not found: HELIX 3 3 LEU A 205 VAL A 212
1 8
Start residue of secondary structure not found: HELIX 4 4 LYS A 218 THR A 231
1 14
Start residue of secondary structure not found: HELIX 5 5 ALA A 241 SER A 246
1 6
Start residue of secondary structure not found: HELIX 6 6 VAL A 248 ALA A 281
1 34
64 messages similar to the above omitted
Summary of feedback from opening Y_NRinner.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 VAL K 90 THR K 97 1 8
Start residue of secondary structure not found: HELIX 2 2 THR K 134 LEU K 136
1 3
Start residue of secondary structure not found: HELIX 3 3 ALA K 153 LEU K 155
1 3
Start residue of secondary structure not found: HELIX 4 4 GLY K 250 SER K 260
1 11
Start residue of secondary structure not found: HELIX 5 5 SER K 270 LEU K 272
1 3
32 messages similar to the above omitted
Summary of feedback from opening Y_NRouter.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 2 2 ASN A 180 VAL A 197 1 18
Start residue of secondary structure not found: HELIX 3 3 LEU A 205 VAL A 212
1 8
Start residue of secondary structure not found: HELIX 4 4 LYS A 218 THR A 231
1 14
Start residue of secondary structure not found: HELIX 5 5 ALA A 241 SER A 246
1 6
Start residue of secondary structure not found: HELIX 6 6 VAL A 248 ALA A 281
1 34
64 messages similar to the above omitted
Summary of feedback from opening hNup155_CRconnector_CTD.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 ALA D 12 MET D 39 1 28
Start residue of secondary structure not found: HELIX 2 2 LEU D 43 LEU D 46 1
4
Start residue of secondary structure not found: HELIX 3 3 ASP D 62 ASP D 64 1
3
Start residue of secondary structure not found: HELIX 4 4 PRO D 91 GLY D 98 1
8
Start residue of secondary structure not found: HELIX 5 5 PRO D 110 ILE D 112
1 3
52 messages similar to the above omitted
Summary of feedback from opening hNup155_CRconnector_NTD.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 24 24 THR D 869 GLN D 886 1 18
Start residue of secondary structure not found: HELIX 25 25 LYS D 890 GLN D
910 1 21
Start residue of secondary structure not found: HELIX 26 26 LEU D 913 VAL D
923 1 11
Start residue of secondary structure not found: HELIX 27 27 TYR D 926 GLU D
938 1 13
Start residue of secondary structure not found: HELIX 28 28 LEU D 945 HIS D
952 1 8
23 messages similar to the above omitted
Summary of feedback from opening hNup155_NRconnector_CTD.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 ALA D 12 MET D 39 1 28
Start residue of secondary structure not found: HELIX 2 2 LEU D 43 LEU D 46 1
4
Start residue of secondary structure not found: HELIX 3 3 ASP D 62 ASP D 64 1
3
Start residue of secondary structure not found: HELIX 4 4 PRO D 91 GLY D 98 1
8
Start residue of secondary structure not found: HELIX 5 5 PRO D 110 ILE D 112
1 3
52 messages similar to the above omitted
Summary of feedback from opening hNup155_NRconnector_NTD.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 24 24 THR D 869 GLN D 886 1 18
Start residue of secondary structure not found: HELIX 25 25 LYS D 890 GLN D
910 1 21
Start residue of secondary structure not found: HELIX 26 26 LEU D 913 VAL D
923 1 11
Start residue of secondary structure not found: HELIX 27 27 TYR D 926 GLU D
938 1 13
Start residue of secondary structure not found: HELIX 28 28 LEU D 945 HIS D
952 1 8
23 messages similar to the above omitted
Summary of feedback from opening hNup93_CR_outer.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 LYS02 5 GLY02 17 1 13
Start residue of secondary structure not found: HELIX 2 2 PRO02 22 LYS02 25 1
4
Start residue of secondary structure not found: HELIX 3 3 SER02 26 LYS02 28 1
3
Start residue of secondary structure not found: HELIX 4 4 GLY02 29 TYR02 36 1
8
Start residue of secondary structure not found: HELIX 5 5 TYR02 37 ALA02 39 1
3
46 messages similar to the above omitted
Summary of feedback from opening hNup93_NR_outer.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 GLY L 147 ALA L 150 1 4
Start residue of secondary structure not found: HELIX 2 2 SER L 151 SER L 153
1 3
Start residue of secondary structure not found: HELIX 3 3 MET L 154 SER L 161
1 8
Start residue of secondary structure not found: HELIX 4 4 PHE L 162 LYS L 164
1 3
Start residue of secondary structure not found: HELIX 5 5 VAL L 170 ILE L 191
1 22
52 messages similar to the above omitted
Summary of feedback from opening hNups_IRcyt_inner.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 209 209 GLN F 183 ALA F 194 1 12
Start residue of secondary structure not found: HELIX 210 210 GLN F 220 LEU F
225 1 6
Start residue of secondary structure not found: HELIX 211 211 SER F 247 GLU F
250 1 4
Start residue of secondary structure not found: SHEET 79 79 1 TRP F 175 PHE F
179 0
Start residue of secondary structure not found: SHEET 80 80 1 ILE F 199 MET F
204 0
3 messages similar to the above omitted
Summary of feedback from opening hNups_IRcyt_outer.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 158 158 GLN F 183 TYR F 196 1 14
Start residue of secondary structure not found: HELIX 159 159 LYS F 218 LYS F
227 1 10
Start residue of secondary structure not found: HELIX 160 160 LYS F 246 GLU F
250 1 5
Start residue of secondary structure not found: SHEET 51 51 1 TRP F 175 PHE F
179 0
Start residue of secondary structure not found: SHEET 52 52 1 ILE F 199 MET F
204 0
2 messages similar to the above omitted
Summary of feedback from opening hNups_IRnuc_inner.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 204 204 GLN F 183 ALA F 194 1 12
Start residue of secondary structure not found: HELIX 205 205 GLN F 220 LEU F
225 1 6
Start residue of secondary structure not found: HELIX 206 206 LYS F 246 GLU F
250 1 5
Start residue of secondary structure not found: SHEET 77 77 1 TRP F 175 PHE F
179 0
Start residue of secondary structure not found: SHEET 78 78 1 ILE F 199 MET F
204 0
3 messages similar to the above omitted
Summary of feedback from opening hNups_IRnuc_outer.pdb.pdb
---
warnings | Start residue of secondary structure not found: HELIX 159 159 GLN F 183 TYR F 196 1 14
Start residue of secondary structure not found: HELIX 160 160 LYS F 218 LYS F
227 1 10
Start residue of secondary structure not found: HELIX 161 161 LYS F 246 GLU F
250 1 5
Start residue of secondary structure not found: SHEET 51 51 1 TRP F 175 PHE F
179 0
Start residue of secondary structure not found: SHEET 52 52 1 ILE F 199 MET F
204 0
2 messages similar to the above omitted
Chain information for Nup133_propeller_CRinner.pdb.pdb #88
---
Chain | Description
K | No description available
Chain information for Nup133_propeller_CRouter.pdb.pdb #89
---
Chain | Description
K | No description available
Chain information for Nup133_propeller_NRinner.pdb.pdb #90
---
Chain | Description
K | No description available
Chain information for Nup133_propeller_NRouter.pdb.pdb #91
---
Chain | Description
K | No description available
Chain information for Y_CRinner.pdb.pdb #92
---
Chain | Description
A | No description available
C | No description available
K | No description available
L | No description available
M | No description available
N | No description available
O | No description available
P | No description available
Q | No description available
R | No description available
S | No description available
Chain information for Y_CRouter.pdb.pdb #93
---
Chain | Description
A | No description available
C | No description available
J | No description available
K | No description available
L | No description available
M | No description available
N | No description available
O | No description available
P | No description available
Q | No description available
R | No description available
S | No description available
U | No description available
V | No description available
W | No description available
Chain information for Y_NRinner.pdb.pdb #94
---
Chain | Description
K | No description available
L | No description available
M | No description available
N | No description available
O | No description available
P | No description available
Q | No description available
R | No description available
S | No description available
T | No description available
Chain information for Y_NRouter.pdb.pdb #95
---
Chain | Description
A | No description available
C | No description available
K | No description available
L | No description available
M | No description available
N | No description available
O | No description available
P | No description available
Q | No description available
R | No description available
S | No description available
T | No description available
Chain information for hNup155_CRconnector_CTD.pdb.pdb #96
---
Chain | Description
D | No description available
Chain information for hNup155_CRconnector_NTD.pdb.pdb #97
---
Chain | Description
D | No description available
Chain information for hNup155_NRconnector_CTD.pdb.pdb #98
---
Chain | Description
D | No description available
Chain information for hNup155_NRconnector_NTD.pdb.pdb #99
---
Chain | Description
D | No description available
Chain information for hNup358_1_CRinner.pdb.pdb #100
---
Chain | Description
0 | No description available
Chain information for hNup358_1_CRouter.pdb.pdb #101
---
Chain | Description
0 | No description available
Chain information for hNup358_2_CRinner.pdb.pdb #102
---
Chain | Description
0 | No description available
Chain information for hNup358_2_CRouter.pdb.pdb #103
---
Chain | Description
0 | No description available
Chain information for hNup358_CRmiddle.pdb.pdb #104
---
Chain | Description
0 | No description available
Chain information for hNup53_dimer_IRcyt_innerF7.pdb.pdb #105
---
Chain | Description
F | No description available
Chain information for hNup53_dimer_IRcyt_outerG7.pdb.pdb #106
---
Chain | Description
F | No description available
Chain information for hNup53_dimer_IRnuc_innerF0.pdb.pdb #107
---
Chain | Description
F | No description available
Chain information for hNup53_dimer_IRnuc_outerG0.pdb.pdb #108
---
Chain | Description
F | No description available
Chain information for hNup93_CR_outer.pdb #109
---
Chain | Description
A | No description available
Chain information for hNup93_NR_outer.pdb #110
---
Chain | Description
A | No description available
Chain information for hNups_IRcyt_inner.pdb.pdb #111
---
Chain | Description
4 | No description available
A | No description available
C | No description available
D | No description available
E | No description available
F | No description available
H | No description available
I | No description available
J | No description available
U | No description available
Chain information for hNups_IRcyt_outer.pdb.pdb #112
---
Chain | Description
A | No description available
B | No description available
D | No description available
F | No description available
H | No description available
I | No description available
J | No description available
U | No description available
Chain information for hNups_IRnuc_inner.pdb.pdb #113
---
Chain | Description
4 | No description available
A | No description available
C | No description available
D | No description available
E | No description available
F | No description available
H | No description available
I | No description available
J | No description available
U | No description available
Chain information for hNups_IRnuc_outer.pdb.pdb #114
---
Chain | Description
A | No description available
B | No description available
D | No description available
F | No description available
H | No description available
I | No description available
J | No description available
U | No description available
> hide #88-91,96,98,100-110#!92-95,97,99,111-114 atoms
> show #88-91,96,98,100-110#!92-95,97,99,111-114 cartoons
> color /A* #FF004A
> color /0* #104a8e
> color /L* #FF8853
> color /P* #FF5851
> color /R* #45f248
> color /M* #533c8c
> color /B* #5F84A2
> color /C* #1b3e5c
> color /R* #1b6970
> color /T* #8df245
> color /N* #8df245
> color /O* #104a8e
> color /Q* cyan
> color /D* #ff8c69
> color /F* #b4e400
> color /I* #195d6b
> color /J* #aeff00
> color /D* #FA8072
> color /F* #8df245
> color /4* #45f248
> color /K* purple
> color /E* #159493
> color /H* #00C9CA
> color /W* #1d5a8f
> color /U* magenta
> color /V #00d948
> color /1* #002a45
> color /W* #1787e8
> color /D* #FA8072
> color /F* #b4e400
> color /S* magenta
> color /O* #FFE800
> color /U* magenta
> view
> volume #5 level 0.04263
> volume #5 level 0.02872
> volume #5 level 0.05141
> volume #5 level 0.02652
> volume #5 level 0.04116
> hide #!5 models
> show #!47 models
> volume #47 level 0.01916
> volume #47 level 0.01189
> hide #!47 models
> show #!46 models
> volume #46 level 0.01128
> show #!5 models
> volume #5 level 0.02652
> open 7r5j
7r5j title:
Human nuclear pore complex (dilated) [more info...]
Chain information for 7r5j #115
---
Chain | Description | UniProt
00 01 02 03 04 | E3 SUMO-protein ligase RanBP2 | RBP2_HUMAN 1-3224
10 11 12 13 14 15 16 17 | Nuclear pore membrane glycoprotein 210 | PO210_HUMAN 1-1887
40 41 | Aladin | AAAS_HUMAN 1-546
A0 A1 A2 A3 A4 A5 A6 | Nuclear pore complex protein Nup93 | NUP93_HUMAN 1-819
B0 B1 | Nucleoporin NUP188 homolog | NU188_HUMAN 1-1749
C0 C1 C2 C3 C4 | Nuclear pore complex protein Nup205 | NU205_HUMAN 1-2012
D0 D1 D2 D3 D4 D5 | Nuclear pore complex protein Nup155 | NU155_HUMAN 1-1391
E0 E1 | Nucleoporin NDC1 | NDC1_HUMAN 1-674
F0 F1 F2 F3 | Nucleoporin NUP35 | NUP35_HUMAN 1-326
H0 H1 H2 H3 | Nucleoporin p54 | NUP54_HUMAN 1-507
I0 I1 I2 I3 | Nucleoporin p58/p45 | NUP58_HUMAN 1-599
J0 J1 J2 J3 J4 | Nuclear pore glycoprotein p62 | NUP62_HUMAN 1-522
K0 K1 K2 K3 | Nuclear pore complex protein Nup133 | NU133_HUMAN 1-1156
L0 L1 L2 L3 | Nuclear pore complex protein Nup107 | NU107_HUMAN 1-925
M0 M1 M2 M3 | Nuclear pore complex protein Nup96 | NUP98_HUMAN 1-937
N0 N1 N2 N3 | Protein SEC13 homolog | SEC13_HUMAN 1-322
O0 O1 O2 O3 | Nucleoporin SEH1 | SEH1_HUMAN 1-360
P0 P1 P2 P3 | Nuclear pore complex protein Nup85 | NUP85_HUMAN 1-656
Q0 Q1 Q2 Q3 | Nucleoporin Nup43 | NUP43_HUMAN 1-380
R0 R1 R2 R3 | Nuclear pore complex protein Nup160 | NU160_HUMAN 1-1436
S0 S1 S2 S3 | Nucleoporin Nup37 | NUP37_HUMAN 1-326
T0 T1 | Protein ELYS | ELYS_HUMAN 1-2266
U0 U1 U2 U3 U4 U5 U6 | Nuclear pore complex protein Nup98 | NUP98_HUMAN 1-880
V0 | Nuclear pore complex protein Nup214 | NU214_HUMAN 1-2090
W0 | Nuclear pore complex protein Nup88 | NUP88_HUMAN 1-741
7r5j mmCIF Assemblies
---
1| author_and_software_defined_assembly
> select #115
617133 atoms, 630097 bonds, 18 pseudobonds, 78030 residues, 2 models selected
> ui mousemode right "translate selected models"
> view matrix models #115,1,0,0,-244.52,0,1,0,835.64,0,0,1,-355.88
> view matrix models
> #115,0.50322,0.77396,0.38438,-1277.1,-0.85786,0.50103,0.11423,1698.6,-0.10417,-0.38723,0.91608,219.8
> select clear
[Repeated 1 time(s)]Drag select of 183089 atoms, 4 pseudobonds
> delete atoms (#!115 & sel)
> delete bonds (#!115 & sel)
Drag select of 135456 atoms, 4 pseudobonds
> delete atoms (#!115 & sel)
> delete bonds (#!115 & sel)
> select #115
298588 atoms, 304677 bonds, 23 pseudobonds, 38158 residues, 2 models selected
> view matrix models
> #115,0.50322,0.77396,0.38438,-436.68,-0.85786,0.50103,0.11423,1188.9,-0.10417,-0.38723,0.91608,128.15
> view matrix models
> #115,0.50322,0.77396,0.38438,-873.48,-0.85786,0.50103,0.11423,1953.1,-0.10417,-0.38723,0.91608,217.55
> view matrix models
> #115,0.50322,0.77396,0.38438,108.52,-0.85786,0.50103,0.11423,1902.6,-0.10417,-0.38723,0.91608,314.7
> view matrix models
> #115,-0.13218,0.97086,-0.19991,742.95,-0.98018,-0.097998,0.17215,2610.8,0.14754,0.2187,0.96457,-565.94
> view matrix models
> #115,-0.17035,0.97982,-0.10457,657.98,-0.98326,-0.16206,0.083257,2774,0.064629,0.11701,0.99103,-432.46
> view matrix models
> #115,-0.17035,0.97982,-0.10457,399.57,-0.98326,-0.16206,0.083257,1863.7,0.064629,0.11701,0.99103,-506.43
> view matrix models
> #115,-0.17035,0.97982,-0.10457,375.28,-0.98326,-0.16206,0.083257,1840.2,0.064629,0.11701,0.99103,-277.22
> ui tool show "Fit in Map"
> fitmap sel inMap #85
Fit molecule 7r5j (#115) to map volume sum (#85) using 298588 atoms
average map value = 0.1078, steps = 140
shifted from previous position = 41.5
rotated from previous position = 23.5 degrees
atoms outside contour = 143320, contour level = 0.096424
Position of 7r5j (#115) relative to volume sum (#85) coordinates:
Matrix rotation and translation
-0.51975144 0.85352115 0.03687935 547.80360711
-0.83535043 -0.51678423 0.18741321 2048.98769178
0.17901981 0.06660110 0.98158861 -308.11437663
Axis -0.07110179 -0.08365421 -0.99395498
Axis point 860.44937607 882.28303709 0.00000000
Rotation angle (degrees) 121.83491013
Shift along axis 95.89556419
> hide #!5 models
> show #!85 models
> hide #!46 models
> hide sel atoms
> show sel cartoons
> select sel & ~/1*
186220 atoms, 189877 bonds, 23 pseudobonds, 23510 residues, 2 models selected
> fitmap sel inMap #85
Fit molecule 7r5j (#115) to map volume sum (#85) using 186220 atoms
average map value = 0.1719, steps = 68
shifted from previous position = 4.16
rotated from previous position = 10.6 degrees
atoms outside contour = 30279, contour level = 0.096424
Position of 7r5j (#115) relative to volume sum (#85) coordinates:
Matrix rotation and translation
-0.55493095 0.82927747 -0.06595837 696.33392283
-0.83189504 -0.55332700 0.04218860 2229.11007739
-0.00151049 0.07828220 0.99693009 -220.18442636
Axis 0.02170634 -0.03875832 -0.99901283
Axis point 943.56629507 933.43175904 0.00000000
Rotation angle (degrees) 123.75645675
Shift along axis 148.68536500
> volume #85 level 0.004864
> volume #85 level 0.0744
> select clear
> select /1*
122882 atoms, 125530 bonds, 15958 residues, 3 models selected
> close #88-91,96,98,100-110#92-95,97,99,111-114
> rename #115 id #88
> save /Users/kosinski/Desktop/FluNPC_paper/cutting_rigid_bodies.cxs
——— End of log from Sat Nov 16 20:51:36 2024 ———
opened ChimeraX session
> close #55-60,69-77,86-87#61-68,78-85,88
> show #!45 models
> show #!44 models
> close #15-22,29-31,36-38,43#13-14,23-28,32-35,39-42,44-45
> show #12 models
> hide #12 models
> rename #46 id #13
> rename #47 id #14
> rename #48 id #15
> rename #49 id #16
> rename #50 id #17
> rename #51 id #18
> rename #52 id #19
> rename #53 id #20
> rename #54 id #21
> show #!13-21 target m
> hide #!13-21 target m
> show #!11 models
> hide #!11 models
> show #!10 models
> hide #!10 models
> show #!9-11 target m
> hide #!9-11 target m
> show #!6-8 target m
> volume #7 level 0.06482
> hide #!6-8 target m
> show #!5 models
> hide #!5 models
> show #1 models
> hide #1 models
> save /Users/kosinski/Desktop/FluNPC_paper/mock_maps.cxs includeMaps true
——— End of log from Sat Dec 7 09:38:15 2024 ———
opened ChimeraX session
> cd s127_fits
Current working directory is: /Users/kosinski/Desktop/FluNPC_paper/s127_fits
> open Y_CRinner.pdb
No such file/path: Y_CRinner.pdb
> open Y_CRouter.pdb
No such file/path: Y_CRouter.pdb
> open Y_NRinner.pdb
No such file/path: Y_NRinner.pdb
> open Y_NRouter.pdb
No such file/path: Y_NRouter.pdb
> open Nup133_propeller_CRinner.pdb
No such file/path: Nup133_propeller_CRinner.pdb
> open Nup133_propeller_CRouter.pdb
No such file/path: Nup133_propeller_CRouter.pdb
> open Nup133_propeller_NRinner.pdb
No such file/path: Nup133_propeller_NRinner.pdb
> open Nup133_propeller_NRouter.pdb
No such file/path: Nup133_propeller_NRouter.pdb
> open hNup155_CRconnector_CTD.pdb
No such file/path: hNup155_CRconnector_CTD.pdb
> open hNup155_CRconnector_NTD.pdb
No such file/path: hNup155_CRconnector_NTD.pdb
> open hNup155_NRconnector_CTD.pdb
No such file/path: hNup155_NRconnector_CTD.pdb
> open hNup155_NRconnector_NTD.pdb
No such file/path: hNup155_NRconnector_NTD.pdb
> open hNup358_1_CRinner.pdb
No such file/path: hNup358_1_CRinner.pdb
> open hNup358_1_CRouter.pdb
No such file/path: hNup358_1_CRouter.pdb
> open hNup358_2_CRinner.pdb
No such file/path: hNup358_2_CRinner.pdb
> open hNup358_2_CRouter.pdb
No such file/path: hNup358_2_CRouter.pdb
> open hNup358_CRmiddle.pdb
No such file/path: hNup358_CRmiddle.pdb
> open hNup93_CR_outer.pdb
No such file/path: hNup93_CR_outer.pdb
> open hNup93_NR_outer.pdb
No such file/path: hNup93_NR_outer.pdb
> open hNups_IRcyt_inner.pdb
No such file/path: hNups_IRcyt_inner.pdb
> open hNups_IRcyt_outer.pdb
No such file/path: hNups_IRcyt_outer.pdb
> open hNups_IRnuc_inner.pdb
No such file/path: hNups_IRnuc_inner.pdb
> open hNups_IRnuc_outer.pdb
No such file/path: hNups_IRnuc_outer.pdb
> open hNup53_dimer_IRcyt_innerF7.pdb
No such file/path: hNup53_dimer_IRcyt_innerF7.pdb
> open hNup53_dimer_IRcyt_outerG7.pdb
No such file/path: hNup53_dimer_IRcyt_outerG7.pdb
> open hNup53_dimer_IRnuc_innerF0.pdb
No such file/path: hNup53_dimer_IRnuc_innerF0.pdb
> open hNup53_dimer_IRnuc_outerG0.pdb
No such file/path: hNup53_dimer_IRnuc_outerG0.pdb
> open hGp210.pdb
No such file/path: hGp210.pdb
> open Y_CRinner.pdb
Chain information for Y_CRinner.pdb #22
---
Chain | Description
A | No description available
C | No description available
K | No description available
L | No description available
M | No description available
N | No description available
O | No description available
P | No description available
Q | No description available
R | No description available
S | No description available
> open Y_CRouter.pdb
Chain information for Y_CRouter.pdb #23
---
Chain | Description
A | No description available
C | No description available
J | No description available
K | No description available
L | No description available
M | No description available
N | No description available
O | No description available
P | No description available
Q | No description available
R | No description available
S | No description available
U | No description available
V | No description available
W | No description available
> open Y_NRinner.pdb
Chain information for Y_NRinner.pdb #24
---
Chain | Description
K | No description available
L | No description available
M | No description available
N | No description available
O | No description available
P | No description available
Q | No description available
R | No description available
S | No description available
T | No description available
> open Y_NRouter.pdb
Chain information for Y_NRouter.pdb #25
---
Chain | Description
A | No description available
C | No description available
K | No description available
L | No description available
M | No description available
N | No description available
O | No description available
P | No description available
Q | No description available
R | No description available
S | No description available
T | No description available
> open Nup133_propeller_CRinner.pdb
Chain information for Nup133_propeller_CRinner.pdb #26
---
Chain | Description
K | No description available
> open Nup133_propeller_CRouter.pdb
Chain information for Nup133_propeller_CRouter.pdb #27
---
Chain | Description
K | No description available
> open Nup133_propeller_NRinner.pdb
Chain information for Nup133_propeller_NRinner.pdb #28
---
Chain | Description
K | No description available
> open Nup133_propeller_NRouter.pdb
Chain information for Nup133_propeller_NRouter.pdb #29
---
Chain | Description
K | No description available
> open hNup155_CRconnector_CTD.pdb
Chain information for hNup155_CRconnector_CTD.pdb #30
---
Chain | Description
D | No description available
> open hNup155_CRconnector_NTD.pdb
Chain information for hNup155_CRconnector_NTD.pdb #31
---
Chain | Description
D | No description available
> open hNup155_NRconnector_CTD.pdb
Chain information for hNup155_NRconnector_CTD.pdb #32
---
Chain | Description
D | No description available
> open hNup155_NRconnector_NTD.pdb
Chain information for hNup155_NRconnector_NTD.pdb #33
---
Chain | Description
D | No description available
> open hNup358_1_CRinner.pdb
Chain information for hNup358_1_CRinner.pdb #34
---
Chain | Description
0 | No description available
> open hNup358_1_CRouter.pdb
Chain information for hNup358_1_CRouter.pdb #35
---
Chain | Description
0 | No description available
> open hNup358_2_CRinner.pdb
Chain information for hNup358_2_CRinner.pdb #36
---
Chain | Description
0 | No description available
> open hNup358_2_CRouter.pdb
Chain information for hNup358_2_CRouter.pdb #37
---
Chain | Description
0 | No description available
> open hNup358_CRmiddle.pdb
Chain information for hNup358_CRmiddle.pdb #38
---
Chain | Description
0 | No description available
> open hNup93_CR_outer.pdb
Chain information for hNup93_CR_outer.pdb #39
---
Chain | Description
A | No description available
> open hNup93_NR_outer.pdb
Chain information for hNup93_NR_outer.pdb #40
---
Chain | Description
A | No description available
> open hNups_IRcyt_inner.pdb
Chain information for hNups_IRcyt_inner.pdb #41
---
Chain | Description
4 | No description available
A | No description available
C | No description available
D | No description available
E | No description available
F | No description available
H | No description available
I | No description available
J | No description available
U | No description available
> open hNups_IRcyt_outer.pdb
Chain information for hNups_IRcyt_outer.pdb #42
---
Chain | Description
A | No description available
B | No description available
D | No description available
F | No description available
H | No description available
I | No description available
J | No description available
U | No description available
> open hNups_IRnuc_inner.pdb
Chain information for hNups_IRnuc_inner.pdb #43
---
Chain | Description
4 | No description available
A | No description available
C | No description available
D | No description available
E | No description available
F | No description available
H | No description available
I | No description available
J | No description available
U | No description available
> open hNups_IRnuc_outer.pdb
Chain information for hNups_IRnuc_outer.pdb #44
---
Chain | Description
A | No description available
B | No description available
D | No description available
F | No description available
H | No description available
I | No description available
J | No description available
U | No description available
> open hNup53_dimer_IRcyt_innerF7.pdb
Chain information for hNup53_dimer_IRcyt_innerF7.pdb #45
---
Chain | Description
F | No description available
> open hNup53_dimer_IRcyt_outerG7.pdb
Chain information for hNup53_dimer_IRcyt_outerG7.pdb #46
---
Chain | Description
F | No description available
> open hNup53_dimer_IRnuc_innerF0.pdb
Chain information for hNup53_dimer_IRnuc_innerF0.pdb #47
---
Chain | Description
F | No description available
> open hNup53_dimer_IRnuc_outerG0.pdb
Chain information for hNup53_dimer_IRnuc_outerG0.pdb #48
---
Chain | Description
F | No description available
> open hGp210.pdb
Chain information for hGp210.pdb #49
---
Chain | Description
10 11 12 13 14 15 16 17 | No description available
> show #!13 models
> close #26-30,32,34-40,45-49#22-25,31,33,41-44
> open /Users/kosinski/Desktop/FluNPC_paper/s127_fits/s127_unit_fit.cif id 100
Summary of feedback from opening
/Users/kosinski/Desktop/FluNPC_paper/s127_fits/s127_unit_fit.cif
---
warnings | Missing entity information. Treating each chain as a separate entity.
Missing or incomplete sequence information. Inferred polymer connectivity.
Chain information for s127_unit_fit.cif #22
---
Chain | Description
00 10 20 30 40 50 60 70 | No description available
01 02 03 04 05 | No description available
41 42 | No description available
A0 | No description available
A1 A2 | No description available
A3 A4 | No description available
A5 A6 A7 A8 | No description available
B0 B1 | No description available
C0 C1 C2 C3 C4 | No description available
D0 D2 | No description available
D1 D3 | No description available
D4 D5 D6 D7 | No description available
E0 E1 | No description available
F0 F1 F2 F3 | No description available
F4 F5 F6 F7 | No description available
H0 H1 H2 H3 | No description available
I0 I1 I2 I3 | No description available
J0 J1 J2 J3 J4 | No description available
K0 K1 K2 K3 | No description available
K4 K5 K6 K7 | No description available
L0 L1 L2 L3 | No description available
M0 M1 M2 M3 | No description available
N0 N1 N2 N3 | No description available
O0 O1 O2 O3 | No description available
P0 P1 P2 P3 | No description available
Q0 Q1 Q2 Q3 | No description available
R0 R1 R2 R3 | No description available
S0 S1 S2 S3 | No description available
T0 T1 | No description available
U0 | No description available
U1 U2 U3 U4 | No description available
V0 | No description available
W0 | No description available
> hide #!100 atoms
> show #!100 cartoons
> cd /Users/kosinski/Desktop/FluNPC_paper/
Current working directory is: /Users/kosinski/Desktop/FluNPC_paper
> open MAPS/fullAlign/refs/ref_s114_8_symmetrized.em
Opened ref_s114_8_symmetrized.em as #22, grid size 128,128,128, pixel 1, shown
at level 0.0637, step 1, values float32
> open MAPS/fullAlign/refs/ref_s127_8_symmetrized.em
Opened ref_s127_8_symmetrized.em as #23, grid size 128,128,128, pixel 1, shown
at level 0.0711, step 1, values float32
> open MAPS/fullAlign/refs/ref_s140_8_symmetrized.em
Opened ref_s140_8_symmetrized.em as #24, grid size 128,128,128, pixel 1, shown
at level 0.0919, step 1, values float32
> open MAPS/fullAlign/refs/ref_s162_8_symmetrized.em
Opened ref_s162_8_symmetrized.em as #25, grid size 128,128,128, pixel 1, shown
at level 0.115, step 1, values float32
> open MAPS/fullAlign/refs/ref_s200_8_symmetrized.em
Opened ref_s200_8_symmetrized.em as #26, grid size 128,128,128, pixel 1, shown
at level 0.159, step 1, values float32
> volume #22-26 voxelSize 13.34
> vop scale #22-26 factor -1
Opened ref_s114_8_symmetrized.em scaled as #27, grid size 128,128,128, pixel
13.3, shown at step 1, values float32
Opened ref_s127_8_symmetrized.em scaled as #28, grid size 128,128,128, pixel
13.3, shown at step 1, values float32
Opened ref_s140_8_symmetrized.em scaled as #29, grid size 128,128,128, pixel
13.3, shown at step 1, values float32
Opened ref_s162_8_symmetrized.em scaled as #30, grid size 128,128,128, pixel
13.3, shown at step 1, values float32
Opened ref_s200_8_symmetrized.em scaled as #31, grid size 128,128,128, pixel
13.3, shown at step 1, values float32
> close #22-31
> open MAPS/fullAlign/refs/ref_s114_8_symmetrized.em id 1000
Opened ref_s114_8_symmetrized.em as #22, grid size 128,128,128, pixel 1, shown
at level 0.0637, step 1, values float32
> open MAPS/fullAlign/refs/ref_s127_8_symmetrized.em id 1001
Opened ref_s127_8_symmetrized.em as #22, grid size 128,128,128, pixel 1, shown
at level 0.0711, step 1, values float32
> open MAPS/fullAlign/refs/ref_s140_8_symmetrized.em id 1002
Opened ref_s140_8_symmetrized.em as #22, grid size 128,128,128, pixel 1, shown
at level 0.0919, step 1, values float32
> open MAPS/fullAlign/refs/ref_s162_8_symmetrized.em id 1003
Opened ref_s162_8_symmetrized.em as #22, grid size 128,128,128, pixel 1, shown
at level 0.115, step 1, values float32
> open MAPS/fullAlign/refs/ref_s200_8_symmetrized.em id 1004
Opened ref_s200_8_symmetrized.em as #22, grid size 128,128,128, pixel 1, shown
at level 0.159, step 1, values float32
> volume #1000-1001 voxelSize 13.34
> volume scale #1000-1001 factor -1 inPlace true
Expected a keyword
> volume scale #1000-1001 factor -1
Opened ref_s114_8_symmetrized.em scaled as #22, grid size 128,128,128, pixel
13.3, shown at step 1, values float32
Opened ref_s127_8_symmetrized.em scaled as #23, grid size 128,128,128, pixel
13.3, shown at step 1, values float32
> close #22-23
> volume #1000-1004 voxelSize 13.34
> volume scale #1000-1004 factor -1 inPlace true
Expected a keyword
> volume scale #1000-1004 factor -1
Opened ref_s114_8_symmetrized.em scaled as #22, grid size 128,128,128, pixel
13.3, shown at step 1, values float32
Opened ref_s127_8_symmetrized.em scaled as #23, grid size 128,128,128, pixel
13.3, shown at step 1, values float32
Opened ref_s140_8_symmetrized.em scaled as #24, grid size 128,128,128, pixel
13.3, shown at step 1, values float32
Opened ref_s162_8_symmetrized.em scaled as #25, grid size 128,128,128, pixel
13.3, shown at step 1, values float32
Opened ref_s200_8_symmetrized.em scaled as #26, grid size 128,128,128, pixel
13.3, shown at step 1, values float32
> close #1000-1004
> hide #!23-26 target m
> open /Users/kosinski/Desktop/FluNPC_paper/mock_fits/mock_unit_fit.cif id 101
Summary of feedback from opening
/Users/kosinski/Desktop/FluNPC_paper/mock_fits/mock_unit_fit.cif
---
warnings | Missing entity information. Treating each chain as a separate entity.
Missing or incomplete sequence information. Inferred polymer connectivity.
Chain information for mock_unit_fit.cif #27
---
Chain | Description
00 10 20 30 40 50 60 70 | No description available
01 02 03 04 05 | No description available
41 42 | No description available
A0 | No description available
A1 A2 | No description available
A3 A4 | No description available
A5 A6 A7 A8 | No description available
B0 B1 | No description available
C0 C1 C2 C3 C4 | No description available
D0 D2 | No description available
D1 D3 | No description available
D4 D5 D6 D7 | No description available
E0 E1 | No description available
F0 F1 F2 F3 | No description available
F4 F5 F6 F7 | No description available
H0 H1 H2 H3 | No description available
I0 I1 I2 I3 | No description available
J0 J1 J2 J3 J4 | No description available
K0 K1 K2 K3 | No description available
K4 K5 K6 K7 | No description available
L0 L1 L2 L3 | No description available
M0 M1 M2 M3 | No description available
N0 N1 N2 N3 | No description available
O0 O1 O2 O3 | No description available
P0 P1 P2 P3 | No description available
Q0 Q1 Q2 Q3 | No description available
R0 R1 R2 R3 | No description available
S0 S1 S2 S3 | No description available
T0 T1 | No description available
U0 | No description available
U1 U2 U3 U4 | No description available
V0 | No description available
W0 | No description available
> hide #!100-101 atoms
> show #!100-101 cartoons
> hide #!13 models
> hide #!101 models
> show #!101 models
> hide #!100 models
> volume #22 level 0.05621
> volume #22 level 0.05148
> show #!5 models
> hide #!5 models
> volume gaussian #22-26 sDev 30
Opened ref_s114_8_symmetrized.em scaled gaussian as #27, grid size
128,128,128, pixel 13.3, shown at step 1, values float32
Opened ref_s127_8_symmetrized.em scaled gaussian as #28, grid size
128,128,128, pixel 13.3, shown at step 1, values float32
Opened ref_s140_8_symmetrized.em scaled gaussian as #29, grid size
128,128,128, pixel 13.3, shown at step 1, values float32
Opened ref_s162_8_symmetrized.em scaled gaussian as #30, grid size
128,128,128, pixel 13.3, shown at step 1, values float32
Opened ref_s200_8_symmetrized.em scaled gaussian as #31, grid size
128,128,128, pixel 13.3, shown at step 1, values float32
> close #27-31
> volume gaussian #22-26 sDev 10
Opened ref_s114_8_symmetrized.em scaled gaussian as #27, grid size
128,128,128, pixel 13.3, shown at step 1, values float32
Opened ref_s127_8_symmetrized.em scaled gaussian as #28, grid size
128,128,128, pixel 13.3, shown at step 1, values float32
Opened ref_s140_8_symmetrized.em scaled gaussian as #29, grid size
128,128,128, pixel 13.3, shown at step 1, values float32
Opened ref_s162_8_symmetrized.em scaled gaussian as #30, grid size
128,128,128, pixel 13.3, shown at step 1, values float32
Opened ref_s200_8_symmetrized.em scaled gaussian as #31, grid size
128,128,128, pixel 13.3, shown at step 1, values float32
> hide #!28-31 target m
> volume #27 level 0.05372
> show #!5 models
> fitmap #22 inMap #5
Fit map ref_s114_8_symmetrized.em scaled in map full.mrc using 101620 points
correlation = 0.8388, correlation about mean = 0.3538, overlap = 548.6
steps = 152, shift = 4.55, angle = 18.6 degrees
Position of ref_s114_8_symmetrized.em scaled (#22) relative to full.mrc (#5)
coordinates:
Matrix rotation and translation
0.94749324 0.31977578 -0.00004036 -227.82384418
-0.31977579 0.94749324 -0.00008281 318.23385327
0.00001176 0.00009136 1.00000000 4.43690174
Axis 0.00027233 -0.00008148 -0.99999996
Axis point 855.13885862 852.85751479 0.00000000
Rotation angle (degrees) 18.64936658
Shift along axis -4.52487604
> close #27-31
> show #!22 models
> hide #!5 models
> fitmap #22-26 inMap #5
Multiple maps for #22-26
> fitmap #23 inMap #5
Fit map ref_s127_8_symmetrized.em scaled in map full.mrc using 20962 points
correlation = 0.8436, correlation about mean = 0.1454, overlap = 191.1
steps = 136, shift = 10.1, angle = 17.2 degrees
Position of ref_s127_8_symmetrized.em scaled (#23) relative to full.mrc (#5)
coordinates:
Matrix rotation and translation
0.95544690 -0.29516303 0.00003030 290.29635621
0.29516303 0.95544690 -0.00000235 -213.67839070
-0.00002825 0.00001119 1.00000000 10.07430928
Axis 0.00002294 0.00009919 0.99999999
Axis point 852.95808172 854.76220573 0.00000000
Rotation angle (degrees) 17.16731366
Shift along axis 10.05977370
> show #!23 models
> hide #!22 models
> volume #23 level 0.05528
> show #!22 models
> hide #!22 models
> hide #!23 models
> show #!24 models
> volume #24 level 0.06449
> fitmap #24 inMap #5
Fit map ref_s140_8_symmetrized.em scaled in map full.mrc using 113892 points
correlation = 0.3662, correlation about mean = 0.1585, overlap = 207.5
steps = 100, shift = 1.28, angle = 10.1 degrees
Position of ref_s140_8_symmetrized.em scaled (#24) relative to full.mrc (#5)
coordinates:
Matrix rotation and translation
0.98440820 -0.17589860 -0.00043258 164.82473649
0.17589844 0.98440824 -0.00038634 -135.69508372
0.00049379 0.00030422 0.99999983 -1.00262244
Axis 0.00196294 -0.00263323 0.99999461
Axis point 847.84365178 861.89405619 0.00000000
Rotation angle (degrees) 10.13100571
Shift along axis -0.32175916
> show #!5 models
> hide #!24 models
> show #!25 models
> hide #!5 models
> volume #25 level 0.07094
> fitmap #25 inMap #5
Fit map ref_s162_8_symmetrized.em scaled in map full.mrc using 136096 points
correlation = 0.1543, correlation about mean = 0.1074, overlap = 94.05
steps = 80, shift = 38.3, angle = 6.02 degrees
Position of ref_s162_8_symmetrized.em scaled (#25) relative to full.mrc (#5)
coordinates:
Matrix rotation and translation
0.99447770 0.10494784 0.00023836 -84.88622735
-0.10494792 0.99447765 0.00037210 94.34721978
-0.00019799 -0.00039506 0.99999990 -37.78618865
Axis -0.00365490 0.00207888 -0.99999116
Axis point 853.37844638 852.41286371 0.00000000
Rotation angle (degrees) 6.02421702
Shift along axis 38.29224197
> show #!5 models
> volume gaussian #25 sDev 30
Opened ref_s162_8_symmetrized.em scaled gaussian as #27, grid size
128,128,128, pixel 13.3, shown at step 1, values float32
> volume #27 level 0.01191
> close #27
> show #!26 models
> hide #!26 models
> show #!22 models
> hide #!5 models
> volume gaussian #22 sDev 10
Opened ref_s114_8_symmetrized.em scaled gaussian as #27, grid size
128,128,128, pixel 13.3, shown at step 1, values float32
> volume #27 color #b2b2ff69
> volume #27 level 0.03696
> save /Users/kosinski/Desktop/FluNPC_paper/all_maps.cxs includeMaps true
> volume gaussian #22 sDev 5
Opened ref_s114_8_symmetrized.em scaled gaussian as #28, grid size
128,128,128, pixel 13.3, shown at step 1, values float32
> volume #26 level 0.1073
> volume #28 level 0.04505
> close #28
> rename #27 "ref_s114_8_symmetrized.em scaled gaussian10"
> show #!22 models
> show #!23 models
> hide #!22 models
> hide #!27 models
> show #!100 models
> volume gaussian #23 sDev 10
Opened ref_s127_8_symmetrized.em scaled gaussian as #28, grid size
128,128,128, pixel 13.3, shown at step 1, values float32
> volume #28 level 0.03993
> rename #28 "ref_s127_8_symmetrized.em scaled gaussian10"
> volume #28 color #ffb2b263
> hide #!101 models
> show #!22 models
> hide #!22 models
> show #!22 models
> hide #!22 models
> show #!27 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> volume #28 level 0.02258
> hide #!100 models
> show #!100 models
> volume #28 level 0.0128
> volume #28 level 0.03414
> hide #!27 models
> hide #!28 models
> save /Users/kosinski/Desktop/FluNPC_paper/all_maps.cxs includeMaps true
> show #!24 models
> volume gaussian #24 sDev 10
Opened ref_s140_8_symmetrized.em scaled gaussian as #29, grid size
128,128,128, pixel 13.3, shown at step 1, values float32
> volume #29 level 0.03431
> close #29
> volume gaussian #24 sDev 20
Opened ref_s140_8_symmetrized.em scaled gaussian as #29, grid size
128,128,128, pixel 13.3, shown at step 1, values float32
> volume #29 level 0.02465
> close #29
> volume gaussian #24 sDev 15
Opened ref_s140_8_symmetrized.em scaled gaussian as #29, grid size
128,128,128, pixel 13.3, shown at step 1, values float32
> volume #29 level 0.03186
> fitmap #24 inMap #5
Fit map ref_s140_8_symmetrized.em scaled in map full.mrc using 113892 points
correlation = 0.3652, correlation about mean = 0.1579, overlap = 207.6
steps = 48, shift = 0.291, angle = 0.0129 degrees
Position of ref_s140_8_symmetrized.em scaled (#24) relative to full.mrc (#5)
coordinates:
Matrix rotation and translation
0.98443060 -0.17577340 -0.00031570 164.64275969
0.17577333 0.98443064 -0.00024273 -135.72520597
0.00035346 0.00018346 0.99999992 -0.49237413
Axis 0.00121234 -0.00190347 0.99999745
Axis point 848.47127079 861.52180882 0.00000000
Rotation angle (degrees) 10.12369218
Shift along axis -0.03442083
> show #!28 models
> rename #29 "ref_s140_8_symmetrized.em scaled gaussian15"
> volume #29 color #99bfe5a4
> volume #29 color #99bfe5a3
> volume gaussian #24 sDev 30
Opened ref_s140_8_symmetrized.em scaled gaussian as #30, grid size
128,128,128, pixel 13.3, shown at step 1, values float32
> volume #30 level 0.02128
> volume #30 color #cccc996b
> volume #30 level 0.01873
> rename #30 "ref_s140_8_symmetrized.em scaled gaussian30"
> show #!25 models
> volume gaussian #25 sDev 30
Opened ref_s162_8_symmetrized.em scaled gaussian as #31, grid size
128,128,128, pixel 13.3, shown at step 1, values float32
> volume #31 level 0.006317
> hide #!30 models
> rename #31 "ref_s162_8_symmetrized.em scaled gaussian30"
> volume #31 color #b2b2b273
> volume #31 level 0.01824
> show #!30 models
> fitmap #31 inMap #5
Fit map ref_s162_8_symmetrized.em scaled gaussian30 in map full.mrc using
150755 points
correlation = 0.4475, correlation about mean = 0.1854, overlap = 119.3
steps = 124, shift = 2.22, angle = 14 degrees
Position of ref_s162_8_symmetrized.em scaled gaussian30 (#31) relative to
full.mrc (#5) coordinates:
Matrix rotation and translation
0.93974023 0.34188911 0.00036374 -240.17076996
-0.34188919 0.93974026 0.00016990 343.84769519
-0.00028373 -0.00028402 0.99999992 -35.71451857
Axis -0.00066385 0.00094690 -0.99999933
Axis point 855.25533194 853.15447994 0.00000000
Rotation angle (degrees) 19.99202705
Shift along axis 36.19951967
> hide #!30 models
> show #!25 models
> view position #25 sameAsModels #31
> volume gaussian #25 sDev 20
Opened ref_s162_8_symmetrized.em scaled gaussian as #32, grid size
128,128,128, pixel 13.3, shown at step 1, values float32
> volume #32 level 0.02573
> volume #32 level 0.02263
> volume #32 level 0.01726
> close #32
> volume #31 level 0.01638
> show #!30 models
> hide #!31 models
> show #!31 models
> fitmap #31 inMap #30
Fit map ref_s162_8_symmetrized.em scaled gaussian30 in map
ref_s140_8_symmetrized.em scaled gaussian30 using 172137 points
correlation = 0.8743, correlation about mean = 0.3353, overlap = 121.4
steps = 64, shift = 45.7, angle = 3.38 degrees
Position of ref_s162_8_symmetrized.em scaled gaussian30 (#31) relative to
ref_s140_8_symmetrized.em scaled gaussian30 (#30) coordinates:
Matrix rotation and translation
0.83388722 0.55193481 -0.00026108 -327.83351276
-0.55193487 0.83388717 -0.00029238 614.42309728
0.00005633 0.00038791 0.99999992 9.07539927
Axis 0.00061628 -0.00028754 -0.99999977
Axis point 856.83845289 851.83882932 0.00000000
Rotation angle (degrees) 33.49986145
Shift along axis -9.45410625
> hide #!30 models
> show #!5 models
> hide #!5 models
> volume #31 level 0.01042
> volume #31 level 0.02141
> show #!5 models
> hide #!5 models
> volume #31 level 0.01638
> volume gaussian #26 sDev 30
Opened ref_s200_8_symmetrized.em scaled gaussian as #32, grid size
128,128,128, pixel 13.3, shown at step 1, values float32
> volume #32 level 0.01286
> fitmap #31 inMap #31
Fit map ref_s162_8_symmetrized.em scaled gaussian30 in map
ref_s162_8_symmetrized.em scaled gaussian30 using 172137 points
correlation = 0.9992, correlation about mean = 0.9896, overlap = 132.3
steps = 48, shift = 0.646, angle = 0.0211 degrees
Position of ref_s162_8_symmetrized.em scaled gaussian30 (#31) relative to
ref_s162_8_symmetrized.em scaled gaussian30 (#31) coordinates:
Matrix rotation and translation
1.00000000 0.00000000 0.00000000 -0.00000000
-0.00000000 1.00000000 0.00000000 0.00000000
0.00000000 0.00000000 1.00000000 0.00000000
Axis 0.00000000 -0.00094019 -0.99999956
Axis point -0.00000000 1971.73139810 0.00000000
Rotation angle (degrees) 0.00000000
Shift along axis 0.00000000
> fitmap #31 inMap #30
Fit map ref_s162_8_symmetrized.em scaled gaussian30 in map
ref_s140_8_symmetrized.em scaled gaussian30 using 172137 points
correlation = 0.8744, correlation about mean = 0.3356, overlap = 121.4
steps = 48, shift = 0.639, angle = 0.0312 degrees
Position of ref_s162_8_symmetrized.em scaled gaussian30 (#31) relative to
ref_s140_8_symmetrized.em scaled gaussian30 (#30) coordinates:
Matrix rotation and translation
0.83388133 0.55194378 -0.00004131 -328.01457050
-0.55194377 0.83388130 -0.00022021 614.37415694
-0.00008710 0.00020643 0.99999997 9.28777029
Axis 0.00038650 0.00004148 -0.99999992
Axis point 856.65100098 852.10974361 0.00000000
Rotation angle (degrees) 33.50046934
Shift along axis -9.38906453
> fitmap #32 inMap #30
Fit map ref_s200_8_symmetrized.em scaled gaussian in map
ref_s140_8_symmetrized.em scaled gaussian30 using 171984 points
correlation = 0.6798, correlation about mean = 0.3373, overlap = 52.97
steps = 160, shift = 30.1, angle = 21.8 degrees
Position of ref_s200_8_symmetrized.em scaled gaussian (#32) relative to
ref_s140_8_symmetrized.em scaled gaussian30 (#30) coordinates:
Matrix rotation and translation
0.84859250 0.52904671 -0.00059740 -319.73642561
-0.52904695 0.84859248 -0.00036035 583.06370821
0.00031630 0.00062184 0.99999976 29.05657264
Axis 0.00092827 -0.00086353 -0.99999920
Axis point 858.76914414 850.08146997 0.00000000
Rotation angle (degrees) 31.94110424
Shift along axis -29.85684560
> volume #32 level 0.008438
> volume #32 level 0.01938
> close #32
> volume gaussian #26 sDev 60
Opened ref_s200_8_symmetrized.em scaled gaussian as #32, grid size
128,128,128, pixel 13.3, shown at step 1, values float32
> volume #32 level 0.003754
> volume #32 level 0.01333
> close #32
> volume gaussian #26 sDev 40
Opened ref_s200_8_symmetrized.em scaled gaussian as #32, grid size
128,128,128, pixel 13.3, shown at step 1, values float32
> volume #32 level 0.00825
> close #32
> volume gaussian #26 sDev 30
Opened ref_s200_8_symmetrized.em scaled gaussian as #32, grid size
128,128,128, pixel 13.3, shown at step 1, values float32
> volume #32 level 0.01307
> fitmap #32 inMap #30
Fit map ref_s200_8_symmetrized.em scaled gaussian in map
ref_s140_8_symmetrized.em scaled gaussian30 using 166983 points
correlation = 0.6846, correlation about mean = 0.3336, overlap = 52.6
steps = 156, shift = 29.8, angle = 21.7 degrees
Position of ref_s200_8_symmetrized.em scaled gaussian (#32) relative to
ref_s140_8_symmetrized.em scaled gaussian30 (#30) coordinates:
Matrix rotation and translation
0.84934508 0.52783762 -0.00061550 -319.28338424
-0.52783787 0.84934508 -0.00035053 581.37389437
0.00033775 0.00062260 0.99999975 28.71266283
Axis 0.00092180 -0.00090297 -0.99999917
Axis point 858.78257308 849.95074861 0.00000000
Rotation angle (degrees) 31.85950563
Shift along axis -29.53192011
> volume #32 level 0.02065
> view position #26 sameAsModels #32
> rename #32 "ref_s200_8_symmetrized.em scaled gaussian30"
> show #!27 models
> show #!28 models
> show #!29 models
> show #!30 models
> show #!31 models
> hide #!100 models
> hide #!30 models
> close #100-101
> save /Users/kosinski/Desktop/FluNPC_paper/all_maps.cxs includeMaps true
> hide #!27-32 target m
> show #!22 models
> hide #!22 models
> show #!27 models
> cd mock_fits
Current working directory is: /Users/kosinski/Desktop/FluNPC_paper/mock_fits
> open Y_CRinner.pdb
Summary of feedback from opening Y_CRinner.pdb
---
warnings | Start residue of secondary structure not found: HELIX 136 136 VAL K 90 THR K 97 1 8
Start residue of secondary structure not found: HELIX 137 137 THR K 134 LEU K
136 1 3
Start residue of secondary structure not found: HELIX 138 138 ALA K 153 LEU K
155 1 3
Start residue of secondary structure not found: HELIX 139 139 GLY K 250 SER K
260 1 11
Start residue of secondary structure not found: HELIX 140 140 SER K 270 LEU K
272 1 3
32 messages similar to the above omitted
Chain information for Y_CRinner.pdb #33
---
Chain | Description
A | No description available
C | No description available
K | No description available
L | No description available
M | No description available
N | No description available
O | No description available
P | No description available
Q | No description available
R | No description available
S | No description available
> open Y_CRouter.pdb
Summary of feedback from opening Y_CRouter.pdb
---
warnings | Start residue of secondary structure not found: HELIX 2 2 ASN A 180 VAL A 197 1 18
Start residue of secondary structure not found: HELIX 3 3 LEU A 205 VAL A 212
1 8
Start residue of secondary structure not found: HELIX 4 4 LYS A 218 THR A 231
1 14
Start residue of secondary structure not found: HELIX 5 5 ALA A 241 SER A 246
1 6
Start residue of secondary structure not found: HELIX 6 6 VAL A 248 ALA A 281
1 34
64 messages similar to the above omitted
Chain information for Y_CRouter.pdb #34
---
Chain | Description
A | No description available
C | No description available
J | No description available
K | No description available
L | No description available
M | No description available
N | No description available
O | No description available
P | No description available
Q | No description available
R | No description available
S | No description available
U | No description available
V | No description available
W | No description available
> open Y_NRinner.pdb
Summary of feedback from opening Y_NRinner.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 VAL K 90 THR K 97 1 8
Start residue of secondary structure not found: HELIX 2 2 THR K 134 LEU K 136
1 3
Start residue of secondary structure not found: HELIX 3 3 ALA K 153 LEU K 155
1 3
Start residue of secondary structure not found: HELIX 4 4 GLY K 250 SER K 260
1 11
Start residue of secondary structure not found: HELIX 5 5 SER K 270 LEU K 272
1 3
32 messages similar to the above omitted
Chain information for Y_NRinner.pdb #35
---
Chain | Description
K | No description available
L | No description available
M | No description available
N | No description available
O | No description available
P | No description available
Q | No description available
R | No description available
S | No description available
T | No description available
> open Y_NRouter.pdb
Summary of feedback from opening Y_NRouter.pdb
---
warnings | Start residue of secondary structure not found: HELIX 2 2 ASN A 180 VAL A 197 1 18
Start residue of secondary structure not found: HELIX 3 3 LEU A 205 VAL A 212
1 8
Start residue of secondary structure not found: HELIX 4 4 LYS A 218 THR A 231
1 14
Start residue of secondary structure not found: HELIX 5 5 ALA A 241 SER A 246
1 6
Start residue of secondary structure not found: HELIX 6 6 VAL A 248 ALA A 281
1 34
64 messages similar to the above omitted
Chain information for Y_NRouter.pdb #36
---
Chain | Description
A | No description available
C | No description available
K | No description available
L | No description available
M | No description available
N | No description available
O | No description available
P | No description available
Q | No description available
R | No description available
S | No description available
T | No description available
> open Nup133_propeller_CRinner.pdb
Summary of feedback from opening Nup133_propeller_CRinner.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 ILE R 67 ASN R 71 1 5
Start residue of secondary structure not found: HELIX 2 2 VAL R 89 GLY R 92 1
4
Start residue of secondary structure not found: HELIX 3 3 PRO R 169 MET R 172
1 4
Start residue of secondary structure not found: HELIX 4 4 ILE R 186 LYS R 192
1 7
Start residue of secondary structure not found: HELIX 5 5 VAL R 262 THR R 268
1 7
120 messages similar to the above omitted
Chain information for Nup133_propeller_CRinner.pdb #37
---
Chain | Description
K | No description available
> open Nup133_propeller_CRouter.pdb
Summary of feedback from opening Nup133_propeller_CRouter.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 ILE R 67 ASN R 71 1 5
Start residue of secondary structure not found: HELIX 2 2 VAL R 89 GLY R 92 1
4
Start residue of secondary structure not found: HELIX 3 3 PRO R 169 MET R 172
1 4
Start residue of secondary structure not found: HELIX 4 4 ILE R 186 LYS R 192
1 7
Start residue of secondary structure not found: HELIX 5 5 VAL R 262 THR R 268
1 7
120 messages similar to the above omitted
Chain information for Nup133_propeller_CRouter.pdb #38
---
Chain | Description
K | No description available
> open Nup133_propeller_NRinner.pdb
Summary of feedback from opening Nup133_propeller_NRinner.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 ILE R 67 ASN R 71 1 5
Start residue of secondary structure not found: HELIX 2 2 VAL R 89 GLY R 92 1
4
Start residue of secondary structure not found: HELIX 3 3 PRO R 169 MET R 172
1 4
Start residue of secondary structure not found: HELIX 4 4 ILE R 186 LYS R 192
1 7
Start residue of secondary structure not found: HELIX 5 5 VAL R 262 THR R 268
1 7
197 messages similar to the above omitted
Chain information for Nup133_propeller_NRinner.pdb #39
---
Chain | Description
K | No description available
> open Nup133_propeller_NRouter.pdb
Summary of feedback from opening Nup133_propeller_NRouter.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 ILE R 67 ASN R 71 1 5
Start residue of secondary structure not found: HELIX 2 2 VAL R 89 GLY R 92 1
4
Start residue of secondary structure not found: HELIX 3 3 PRO R 169 MET R 172
1 4
Start residue of secondary structure not found: HELIX 4 4 ILE R 186 LYS R 192
1 7
Start residue of secondary structure not found: HELIX 5 5 VAL R 262 THR R 268
1 7
197 messages similar to the above omitted
Chain information for Nup133_propeller_NRouter.pdb #40
---
Chain | Description
K | No description available
> open hNup155_CRconnector_CTD.pdb
Summary of feedback from opening hNup155_CRconnector_CTD.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 ALA D 12 MET D 39 1 28
Start residue of secondary structure not found: HELIX 2 2 LEU D 43 LEU D 46 1
4
Start residue of secondary structure not found: HELIX 3 3 ASP D 62 ASP D 64 1
3
Start residue of secondary structure not found: HELIX 4 4 PRO D 91 GLY D 98 1
8
Start residue of secondary structure not found: HELIX 5 5 PRO D 110 ILE D 112
1 3
52 messages similar to the above omitted
Chain information for hNup155_CRconnector_CTD.pdb #41
---
Chain | Description
D | No description available
> open hNup155_CRconnector_NTD.pdb
Summary of feedback from opening hNup155_CRconnector_NTD.pdb
---
warnings | Start residue of secondary structure not found: HELIX 24 24 THR D 869 GLN D 886 1 18
Start residue of secondary structure not found: HELIX 25 25 LYS D 890 GLN D
910 1 21
Start residue of secondary structure not found: HELIX 26 26 LEU D 913 VAL D
923 1 11
Start residue of secondary structure not found: HELIX 27 27 TYR D 926 GLU D
938 1 13
Start residue of secondary structure not found: HELIX 28 28 LEU D 945 HIS D
952 1 8
23 messages similar to the above omitted
Chain information for hNup155_CRconnector_NTD.pdb #42
---
Chain | Description
D | No description available
> open hNup155_NRconnector_CTD.pdb
Summary of feedback from opening hNup155_NRconnector_CTD.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 ALA D 12 MET D 39 1 28
Start residue of secondary structure not found: HELIX 2 2 LEU D 43 LEU D 46 1
4
Start residue of secondary structure not found: HELIX 3 3 ASP D 62 ASP D 64 1
3
Start residue of secondary structure not found: HELIX 4 4 PRO D 91 GLY D 98 1
8
Start residue of secondary structure not found: HELIX 5 5 PRO D 110 ILE D 112
1 3
52 messages similar to the above omitted
Chain information for hNup155_NRconnector_CTD.pdb #43
---
Chain | Description
D | No description available
> open hNup155_NRconnector_NTD.pdb
Summary of feedback from opening hNup155_NRconnector_NTD.pdb
---
warnings | Start residue of secondary structure not found: HELIX 24 24 THR D 869 GLN D 886 1 18
Start residue of secondary structure not found: HELIX 25 25 LYS D 890 GLN D
910 1 21
Start residue of secondary structure not found: HELIX 26 26 LEU D 913 VAL D
923 1 11
Start residue of secondary structure not found: HELIX 27 27 TYR D 926 GLU D
938 1 13
Start residue of secondary structure not found: HELIX 28 28 LEU D 945 HIS D
952 1 8
23 messages similar to the above omitted
Chain information for hNup155_NRconnector_NTD.pdb #44
---
Chain | Description
D | No description available
> open hNup358_1_CRinner.pdb
Chain information for hNup358_1_CRinner.pdb #45
---
Chain | Description
0 | No description available
> open hNup358_1_CRouter.pdb
Chain information for hNup358_1_CRouter.pdb #46
---
Chain | Description
0 | No description available
> open hNup358_2_CRinner.pdb
Chain information for hNup358_2_CRinner.pdb #47
---
Chain | Description
0 | No description available
> open hNup358_2_CRouter.pdb
Chain information for hNup358_2_CRouter.pdb #48
---
Chain | Description
0 | No description available
> open hNup358_CRmiddle.pdb
Chain information for hNup358_CRmiddle.pdb #49
---
Chain | Description
0 | No description available
> open hNup93_CR_outer.pdb
Summary of feedback from opening hNup93_CR_outer.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 LYS02 5 GLY02 17 1 13
Start residue of secondary structure not found: HELIX 2 2 PRO02 22 LYS02 25 1
4
Start residue of secondary structure not found: HELIX 3 3 SER02 26 LYS02 28 1
3
Start residue of secondary structure not found: HELIX 4 4 GLY02 29 TYR02 36 1
8
Start residue of secondary structure not found: HELIX 5 5 TYR02 37 ALA02 39 1
3
46 messages similar to the above omitted
Chain information for hNup93_CR_outer.pdb #50
---
Chain | Description
A | No description available
> open hNup93_NR_outer.pdb
Summary of feedback from opening hNup93_NR_outer.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 GLY L 147 ALA L 150 1 4
Start residue of secondary structure not found: HELIX 2 2 SER L 151 SER L 153
1 3
Start residue of secondary structure not found: HELIX 3 3 MET L 154 SER L 161
1 8
Start residue of secondary structure not found: HELIX 4 4 PHE L 162 LYS L 164
1 3
Start residue of secondary structure not found: HELIX 5 5 VAL L 170 ILE L 191
1 22
52 messages similar to the above omitted
Chain information for hNup93_NR_outer.pdb #51
---
Chain | Description
A | No description available
> open hNups_IRcyt_inner.pdb
Summary of feedback from opening hNups_IRcyt_inner.pdb
---
warnings | Start residue of secondary structure not found: HELIX 209 209 GLN F 183 ALA F 194 1 12
Start residue of secondary structure not found: HELIX 210 210 GLN F 220 LEU F
225 1 6
Start residue of secondary structure not found: HELIX 211 211 SER F 247 GLU F
250 1 4
Start residue of secondary structure not found: SHEET 79 79 1 TRP F 175 PHE F
179 0
Start residue of secondary structure not found: SHEET 80 80 1 ILE F 199 MET F
204 0
3 messages similar to the above omitted
Chain information for hNups_IRcyt_inner.pdb #52
---
Chain | Description
4 | No description available
A | No description available
C | No description available
D | No description available
E | No description available
F | No description available
H | No description available
I | No description available
J | No description available
U | No description available
> open hNups_IRcyt_outer.pdb
Summary of feedback from opening hNups_IRcyt_outer.pdb
---
warnings | Start residue of secondary structure not found: HELIX 158 158 GLN F 183 TYR F 196 1 14
Start residue of secondary structure not found: HELIX 159 159 LYS F 218 LYS F
227 1 10
Start residue of secondary structure not found: HELIX 160 160 LYS F 246 GLU F
250 1 5
Start residue of secondary structure not found: SHEET 51 51 1 TRP F 175 PHE F
179 0
Start residue of secondary structure not found: SHEET 52 52 1 ILE F 199 MET F
204 0
2 messages similar to the above omitted
Chain information for hNups_IRcyt_outer.pdb #53
---
Chain | Description
A | No description available
B | No description available
D | No description available
F | No description available
H | No description available
I | No description available
J | No description available
U | No description available
> open hNups_IRnuc_inner.pdb
Summary of feedback from opening hNups_IRnuc_inner.pdb
---
warnings | Start residue of secondary structure not found: HELIX 204 204 GLN F 183 ALA F 194 1 12
Start residue of secondary structure not found: HELIX 205 205 GLN F 220 LEU F
225 1 6
Start residue of secondary structure not found: HELIX 206 206 LYS F 246 GLU F
250 1 5
Start residue of secondary structure not found: SHEET 77 77 1 TRP F 175 PHE F
179 0
Start residue of secondary structure not found: SHEET 78 78 1 ILE F 199 MET F
204 0
3 messages similar to the above omitted
Chain information for hNups_IRnuc_inner.pdb #54
---
Chain | Description
4 | No description available
A | No description available
C | No description available
D | No description available
E | No description available
F | No description available
H | No description available
I | No description available
J | No description available
U | No description available
> open hNups_IRnuc_outer.pdb
Summary of feedback from opening hNups_IRnuc_outer.pdb
---
warnings | Start residue of secondary structure not found: HELIX 159 159 GLN F 183 TYR F 196 1 14
Start residue of secondary structure not found: HELIX 160 160 LYS F 218 LYS F
227 1 10
Start residue of secondary structure not found: HELIX 161 161 LYS F 246 GLU F
250 1 5
Start residue of secondary structure not found: SHEET 51 51 1 TRP F 175 PHE F
179 0
Start residue of secondary structure not found: SHEET 52 52 1 ILE F 199 MET F
204 0
2 messages similar to the above omitted
Chain information for hNups_IRnuc_outer.pdb #55
---
Chain | Description
A | No description available
B | No description available
D | No description available
F | No description available
H | No description available
I | No description available
J | No description available
U | No description available
> open hNup53_dimer_IRcyt_innerF7.pdb
Chain information for hNup53_dimer_IRcyt_innerF7.pdb #56
---
Chain | Description
F | No description available
> open hNup53_dimer_IRcyt_outerG7.pdb
Chain information for hNup53_dimer_IRcyt_outerG7.pdb #57
---
Chain | Description
F | No description available
> open hNup53_dimer_IRnuc_innerF0.pdb
Chain information for hNup53_dimer_IRnuc_innerF0.pdb #58
---
Chain | Description
F | No description available
> open hNup53_dimer_IRnuc_outerG0.pdb
Chain information for hNup53_dimer_IRnuc_outerG0.pdb #59
---
Chain | Description
F | No description available
> open hGp210.pdb
Summary of feedback from opening hGp210.pdb
---
warnings | Start residue of secondary structure not found: HELIX 195 195 LEU40 4 LEU40 6 1 3
Start residue of secondary structure not found: HELIX 196 196 SER40 136 ALA40
141 1 6
Start residue of secondary structure not found: HELIX 197 197 GLN40 422 GLY40
424 1 3
Start residue of secondary structure not found: HELIX 198 198 LEU41 4 LEU41 6
1 3
Start residue of secondary structure not found: HELIX 199 199 SER41 136 ALA41
141 1 6
1692 messages similar to the above omitted
Chain information for hGp210.pdb #60
---
Chain | Description
10 11 12 13 14 15 16 17 | No description available
> hide #37-41,43,45-51,56-60#!33-36,42,44,52-55 atoms
> show #37-41,43,45-51,56-60#!33-36,42,44,52-55 cartoons
> select #33,34,37,38,41,45-50
182469 atoms, 186348 bonds, 4 pseudobonds, 22818 residues, 13 models selected
> color (#37-38,41,45-50#!33-34 & sel) forest green
> volume #27 level 0.01976
> ui tool show "Fit in Map"
> fitmap sel inMap #27
Fit molecules Y_CRinner.pdb (#33), Y_CRouter.pdb (#34),
Nup133_propeller_CRinner.pdb (#37), Nup133_propeller_CRouter.pdb (#38),
hNup155_CRconnector_CTD.pdb (#41), hNup358_1_CRinner.pdb (#45),
hNup358_1_CRouter.pdb (#46), hNup358_2_CRinner.pdb (#47),
hNup358_2_CRouter.pdb (#48), hNup358_CRmiddle.pdb (#49), hNup93_CR_outer.pdb
(#50) to map ref_s114_8_symmetrized.em scaled gaussian10 (#27) using 182469
atoms
average map value = 0.04359, steps = 68
shifted from previous position = 10.8
rotated from previous position = 7.52 degrees
atoms outside contour = 33869, contour level = 0.019759
Position of Y_CRinner.pdb (#33) relative to ref_s114_8_symmetrized.em scaled
gaussian10 (#27) coordinates:
Matrix rotation and translation
0.92633696 -0.36703643 0.08475907 306.52046777
0.36000984 0.92882839 0.08758280 -360.97205062
-0.11087271 -0.05061708 0.99254479 204.74843815
Axis -0.18053899 0.25556580 0.94978513
Axis point 1159.59731211 625.45276431 0.00000000
Rotation angle (degrees) 22.50366311
Shift along axis 46.87601686
Position of Y_CRouter.pdb (#34) relative to ref_s114_8_symmetrized.em scaled
gaussian10 (#27) coordinates:
Matrix rotation and translation
0.92633696 -0.36703643 0.08475907 306.52046777
0.36000984 0.92882839 0.08758280 -360.97205062
-0.11087271 -0.05061708 0.99254479 204.74843815
Axis -0.18053899 0.25556580 0.94978513
Axis point 1159.59731211 625.45276431 0.00000000
Rotation angle (degrees) 22.50366311
Shift along axis 46.87601686
Position of Nup133_propeller_CRinner.pdb (#37) relative to
ref_s114_8_symmetrized.em scaled gaussian10 (#27) coordinates:
Matrix rotation and translation
0.92633696 -0.36703643 0.08475907 306.52046777
0.36000984 0.92882839 0.08758280 -360.97205062
-0.11087271 -0.05061708 0.99254479 204.74843815
Axis -0.18053899 0.25556580 0.94978513
Axis point 1159.59731211 625.45276431 0.00000000
Rotation angle (degrees) 22.50366311
Shift along axis 46.87601686
Position of Nup133_propeller_CRouter.pdb (#38) relative to
ref_s114_8_symmetrized.em scaled gaussian10 (#27) coordinates:
Matrix rotation and translation
0.92633696 -0.36703643 0.08475907 306.52046777
0.36000984 0.92882839 0.08758280 -360.97205062
-0.11087271 -0.05061708 0.99254479 204.74843815
Axis -0.18053899 0.25556580 0.94978513
Axis point 1159.59731211 625.45276431 0.00000000
Rotation angle (degrees) 22.50366311
Shift along axis 46.87601686
Position of hNup155_CRconnector_CTD.pdb (#41) relative to
ref_s114_8_symmetrized.em scaled gaussian10 (#27) coordinates:
Matrix rotation and translation
0.92633696 -0.36703643 0.08475907 306.52046777
0.36000984 0.92882839 0.08758280 -360.97205062
-0.11087271 -0.05061708 0.99254479 204.74843815
Axis -0.18053899 0.25556580 0.94978513
Axis point 1159.59731211 625.45276431 0.00000000
Rotation angle (degrees) 22.50366311
Shift along axis 46.87601686
Position of hNup358_1_CRinner.pdb (#45) relative to ref_s114_8_symmetrized.em
scaled gaussian10 (#27) coordinates:
Matrix rotation and translation
0.92633696 -0.36703643 0.08475907 306.52046777
0.36000984 0.92882839 0.08758280 -360.97205062
-0.11087271 -0.05061708 0.99254479 204.74843815
Axis -0.18053899 0.25556580 0.94978513
Axis point 1159.59731211 625.45276431 0.00000000
Rotation angle (degrees) 22.50366311
Shift along axis 46.87601686
Position of hNup358_1_CRouter.pdb (#46) relative to ref_s114_8_symmetrized.em
scaled gaussian10 (#27) coordinates:
Matrix rotation and translation
0.92633696 -0.36703643 0.08475907 306.52046777
0.36000984 0.92882839 0.08758280 -360.97205062
-0.11087271 -0.05061708 0.99254479 204.74843815
Axis -0.18053899 0.25556580 0.94978513
Axis point 1159.59731211 625.45276431 0.00000000
Rotation angle (degrees) 22.50366311
Shift along axis 46.87601686
Position of hNup358_2_CRinner.pdb (#47) relative to ref_s114_8_symmetrized.em
scaled gaussian10 (#27) coordinates:
Matrix rotation and translation
0.92633696 -0.36703643 0.08475907 306.52046777
0.36000984 0.92882839 0.08758280 -360.97205062
-0.11087271 -0.05061708 0.99254479 204.74843815
Axis -0.18053899 0.25556580 0.94978513
Axis point 1159.59731211 625.45276431 0.00000000
Rotation angle (degrees) 22.50366311
Shift along axis 46.87601686
Position of hNup358_2_CRouter.pdb (#48) relative to ref_s114_8_symmetrized.em
scaled gaussian10 (#27) coordinates:
Matrix rotation and translation
0.92633696 -0.36703643 0.08475907 306.52046777
0.36000984 0.92882839 0.08758280 -360.97205062
-0.11087271 -0.05061708 0.99254479 204.74843815
Axis -0.18053899 0.25556580 0.94978513
Axis point 1159.59731211 625.45276431 0.00000000
Rotation angle (degrees) 22.50366311
Shift along axis 46.87601686
Position of hNup358_CRmiddle.pdb (#49) relative to ref_s114_8_symmetrized.em
scaled gaussian10 (#27) coordinates:
Matrix rotation and translation
0.92633696 -0.36703643 0.08475907 306.52046777
0.36000984 0.92882839 0.08758280 -360.97205062
-0.11087271 -0.05061708 0.99254479 204.74843815
Axis -0.18053899 0.25556580 0.94978513
Axis point 1159.59731211 625.45276431 0.00000000
Rotation angle (degrees) 22.50366311
Shift along axis 46.87601686
Position of hNup93_CR_outer.pdb (#50) relative to ref_s114_8_symmetrized.em
scaled gaussian10 (#27) coordinates:
Matrix rotation and translation
0.92633696 -0.36703643 0.08475907 306.52046777
0.36000984 0.92882839 0.08758280 -360.97205062
-0.11087271 -0.05061708 0.99254479 204.74843815
Axis -0.18053899 0.25556580 0.94978513
Axis point 1159.59731211 625.45276431 0.00000000
Rotation angle (degrees) 22.50366311
Shift along axis 46.87601686
> select #35,36,39,40,43,51
135371 atoms, 138333 bonds, 4 pseudobonds, 16966 residues, 8 models selected
> color (#39-40,43,51#!35-36 & sel) forest green
> fitmap sel inMap #27
Fit molecules Y_NRinner.pdb (#35), Y_NRouter.pdb (#36),
Nup133_propeller_NRinner.pdb (#39), Nup133_propeller_NRouter.pdb (#40),
hNup155_NRconnector_CTD.pdb (#43), hNup93_NR_outer.pdb (#51) to map
ref_s114_8_symmetrized.em scaled gaussian10 (#27) using 135371 atoms
average map value = 0.04386, steps = 72
shifted from previous position = 35
rotated from previous position = 16.8 degrees
atoms outside contour = 13049, contour level = 0.019759
Position of Y_NRinner.pdb (#35) relative to ref_s114_8_symmetrized.em scaled
gaussian10 (#27) coordinates:
Matrix rotation and translation
0.99401905 -0.10915621 -0.00332412 25.40496005
0.10637983 0.97471964 -0.19648143 112.03007427
0.02468725 0.19495266 0.98050191 -239.83738167
Axis 0.87426608 -0.06256326 0.48139866
Axis point -0.00000000 1023.33648273 406.59029089
Rotation angle (degrees) 12.93610944
Shift along axis -100.25566559
Position of Y_NRouter.pdb (#36) relative to ref_s114_8_symmetrized.em scaled
gaussian10 (#27) coordinates:
Matrix rotation and translation
0.99401905 -0.10915621 -0.00332412 25.40496005
0.10637983 0.97471964 -0.19648143 112.03007427
0.02468725 0.19495266 0.98050191 -239.83738167
Axis 0.87426608 -0.06256326 0.48139866
Axis point -0.00000000 1023.33648273 406.59029089
Rotation angle (degrees) 12.93610944
Shift along axis -100.25566559
Position of Nup133_propeller_NRinner.pdb (#39) relative to
ref_s114_8_symmetrized.em scaled gaussian10 (#27) coordinates:
Matrix rotation and translation
0.99401905 -0.10915621 -0.00332412 25.40496005
0.10637983 0.97471964 -0.19648143 112.03007427
0.02468725 0.19495266 0.98050191 -239.83738167
Axis 0.87426608 -0.06256326 0.48139866
Axis point -0.00000000 1023.33648273 406.59029089
Rotation angle (degrees) 12.93610944
Shift along axis -100.25566559
Position of Nup133_propeller_NRouter.pdb (#40) relative to
ref_s114_8_symmetrized.em scaled gaussian10 (#27) coordinates:
Matrix rotation and translation
0.99401905 -0.10915621 -0.00332412 25.40496005
0.10637983 0.97471964 -0.19648143 112.03007427
0.02468725 0.19495266 0.98050191 -239.83738167
Axis 0.87426608 -0.06256326 0.48139866
Axis point -0.00000000 1023.33648273 406.59029089
Rotation angle (degrees) 12.93610944
Shift along axis -100.25566559
Position of hNup155_NRconnector_CTD.pdb (#43) relative to
ref_s114_8_symmetrized.em scaled gaussian10 (#27) coordinates:
Matrix rotation and translation
0.99401905 -0.10915621 -0.00332412 25.40496005
0.10637983 0.97471964 -0.19648143 112.03007427
0.02468725 0.19495266 0.98050191 -239.83738167
Axis 0.87426608 -0.06256326 0.48139866
Axis point -0.00000000 1023.33648273 406.59029089
Rotation angle (degrees) 12.93610944
Shift along axis -100.25566559
Position of hNup93_NR_outer.pdb (#51) relative to ref_s114_8_symmetrized.em
scaled gaussian10 (#27) coordinates:
Matrix rotation and translation
0.99401905 -0.10915621 -0.00332412 25.40496005
0.10637983 0.97471964 -0.19648143 112.03007427
0.02468725 0.19495266 0.98050191 -239.83738167
Axis 0.87426608 -0.06256326 0.48139866
Axis point -0.00000000 1023.33648273 406.59029089
Rotation angle (degrees) 12.93610944
Shift along axis -100.25566559
> fitmap sel inMap #22
Fit molecules Y_NRinner.pdb (#35), Y_NRouter.pdb (#36),
Nup133_propeller_NRinner.pdb (#39), Nup133_propeller_NRouter.pdb (#40),
hNup155_NRconnector_CTD.pdb (#43), hNup93_NR_outer.pdb (#51) to map
ref_s114_8_symmetrized.em scaled (#22) using 135371 atoms
average map value = 0.04593, steps = 84
shifted from previous position = 34.5
rotated from previous position = 16.1 degrees
atoms outside contour = 78828, contour level = 0.051481
Position of Y_NRinner.pdb (#35) relative to ref_s114_8_symmetrized.em scaled
(#22) coordinates:
Matrix rotation and translation
0.99432359 -0.10622502 0.00607049 13.78029717
0.10561610 0.97849987 -0.17715316 98.01028917
0.01287812 0.17678871 0.98416457 -204.79668577
Axis 0.85793602 -0.01650132 0.51349147
Axis point 0.00000000 921.36960175 432.58513698
Rotation angle (degrees) 11.90415885
Shift along axis -94.95603801
Position of Y_NRouter.pdb (#36) relative to ref_s114_8_symmetrized.em scaled
(#22) coordinates:
Matrix rotation and translation
0.99432359 -0.10622502 0.00607049 13.78029717
0.10561610 0.97849987 -0.17715316 98.01028917
0.01287812 0.17678871 0.98416457 -204.79668577
Axis 0.85793602 -0.01650132 0.51349147
Axis point 0.00000000 921.36960175 432.58513698
Rotation angle (degrees) 11.90415885
Shift along axis -94.95603801
Position of Nup133_propeller_NRinner.pdb (#39) relative to
ref_s114_8_symmetrized.em scaled (#22) coordinates:
Matrix rotation and translation
0.99432359 -0.10622502 0.00607049 13.78029717
0.10561610 0.97849987 -0.17715316 98.01028917
0.01287812 0.17678871 0.98416457 -204.79668577
Axis 0.85793602 -0.01650132 0.51349147
Axis point 0.00000000 921.36960175 432.58513698
Rotation angle (degrees) 11.90415885
Shift along axis -94.95603801
Position of Nup133_propeller_NRouter.pdb (#40) relative to
ref_s114_8_symmetrized.em scaled (#22) coordinates:
Matrix rotation and translation
0.99432359 -0.10622502 0.00607049 13.78029717
0.10561610 0.97849987 -0.17715316 98.01028917
0.01287812 0.17678871 0.98416457 -204.79668577
Axis 0.85793602 -0.01650132 0.51349147
Axis point 0.00000000 921.36960175 432.58513698
Rotation angle (degrees) 11.90415885
Shift along axis -94.95603801
Position of hNup155_NRconnector_CTD.pdb (#43) relative to
ref_s114_8_symmetrized.em scaled (#22) coordinates:
Matrix rotation and translation
0.99432359 -0.10622502 0.00607049 13.78029717
0.10561610 0.97849987 -0.17715316 98.01028917
0.01287812 0.17678871 0.98416457 -204.79668577
Axis 0.85793602 -0.01650132 0.51349147
Axis point 0.00000000 921.36960175 432.58513698
Rotation angle (degrees) 11.90415885
Shift along axis -94.95603801
Position of hNup93_NR_outer.pdb (#51) relative to ref_s114_8_symmetrized.em
scaled (#22) coordinates:
Matrix rotation and translation
0.99432359 -0.10622502 0.00607049 13.78029717
0.10561610 0.97849987 -0.17715316 98.01028917
0.01287812 0.17678871 0.98416457 -204.79668577
Axis 0.85793602 -0.01650132 0.51349147
Axis point 0.00000000 921.36960175 432.58513698
Rotation angle (degrees) 11.90415885
Shift along axis -94.95603801
> volume #27 level 0.03784
> fitmap sel inMap #22
Fit molecules Y_NRinner.pdb (#35), Y_NRouter.pdb (#36),
Nup133_propeller_NRinner.pdb (#39), Nup133_propeller_NRouter.pdb (#40),
hNup155_NRconnector_CTD.pdb (#43), hNup93_NR_outer.pdb (#51) to map
ref_s114_8_symmetrized.em scaled (#22) using 135371 atoms
average map value = 0.04593, steps = 84
shifted from previous position = 34.5
rotated from previous position = 16.1 degrees
atoms outside contour = 78828, contour level = 0.051481
Position of Y_NRinner.pdb (#35) relative to ref_s114_8_symmetrized.em scaled
(#22) coordinates:
Matrix rotation and translation
0.99432359 -0.10622502 0.00607049 13.78029717
0.10561610 0.97849987 -0.17715316 98.01028917
0.01287812 0.17678871 0.98416457 -204.79668577
Axis 0.85793602 -0.01650132 0.51349147
Axis point 0.00000000 921.36960175 432.58513698
Rotation angle (degrees) 11.90415885
Shift along axis -94.95603801
Position of Y_NRouter.pdb (#36) relative to ref_s114_8_symmetrized.em scaled
(#22) coordinates:
Matrix rotation and translation
0.99432359 -0.10622502 0.00607049 13.78029717
0.10561610 0.97849987 -0.17715316 98.01028917
0.01287812 0.17678871 0.98416457 -204.79668577
Axis 0.85793602 -0.01650132 0.51349147
Axis point 0.00000000 921.36960175 432.58513698
Rotation angle (degrees) 11.90415885
Shift along axis -94.95603801
Position of Nup133_propeller_NRinner.pdb (#39) relative to
ref_s114_8_symmetrized.em scaled (#22) coordinates:
Matrix rotation and translation
0.99432359 -0.10622502 0.00607049 13.78029717
0.10561610 0.97849987 -0.17715316 98.01028917
0.01287812 0.17678871 0.98416457 -204.79668577
Axis 0.85793602 -0.01650132 0.51349147
Axis point 0.00000000 921.36960175 432.58513698
Rotation angle (degrees) 11.90415885
Shift along axis -94.95603801
Position of Nup133_propeller_NRouter.pdb (#40) relative to
ref_s114_8_symmetrized.em scaled (#22) coordinates:
Matrix rotation and translation
0.99432359 -0.10622502 0.00607049 13.78029717
0.10561610 0.97849987 -0.17715316 98.01028917
0.01287812 0.17678871 0.98416457 -204.79668577
Axis 0.85793602 -0.01650132 0.51349147
Axis point 0.00000000 921.36960175 432.58513698
Rotation angle (degrees) 11.90415885
Shift along axis -94.95603801
Position of hNup155_NRconnector_CTD.pdb (#43) relative to
ref_s114_8_symmetrized.em scaled (#22) coordinates:
Matrix rotation and translation
0.99432359 -0.10622502 0.00607049 13.78029717
0.10561610 0.97849987 -0.17715316 98.01028917
0.01287812 0.17678871 0.98416457 -204.79668577
Axis 0.85793602 -0.01650132 0.51349147
Axis point 0.00000000 921.36960175 432.58513698
Rotation angle (degrees) 11.90415885
Shift along axis -94.95603801
Position of hNup93_NR_outer.pdb (#51) relative to ref_s114_8_symmetrized.em
scaled (#22) coordinates:
Matrix rotation and translation
0.99432359 -0.10622502 0.00607049 13.78029717
0.10561610 0.97849987 -0.17715316 98.01028917
0.01287812 0.17678871 0.98416457 -204.79668577
Axis 0.85793602 -0.01650132 0.51349147
Axis point 0.00000000 921.36960175 432.58513698
Rotation angle (degrees) 11.90415885
Shift along axis -94.95603801
Opened map 5 as #61, grid size 279,311,161, pixel 1.67, shown at level 0.099,
step 1, values float32
> fitmap sel inMap #22 resolution 5
Fit map map 5 in map ref_s114_8_symmetrized.em scaled using 517233 points
correlation = 0.7731, correlation about mean = 0.00546, overlap = 8436
steps = 88, shift = 34.5, angle = 16.1 degrees
Position of map 5 (#61) relative to ref_s114_8_symmetrized.em scaled (#22)
coordinates:
Matrix rotation and translation
0.99433066 -0.10612973 0.00655912 13.24617429
0.10561848 0.97864038 -0.17637387 97.76850483
0.01229949 0.17606671 0.98430139 -203.36458032
Axis 0.85710467 -0.01396009 0.51495310
Axis point 0.00000000 916.82309117 435.79587291
Rotation angle (degrees) 11.86459561
Shift along axis -94.73472126
Average map value = 0.04593 for 135371 atoms, 78850 outside contour
> volume #27 level 0.02329
> fitmap sel inMap #22 resolution 5
Fit map map 5 in map ref_s114_8_symmetrized.em scaled using 517233 points
correlation = 0.7731, correlation about mean = 0.00546, overlap = 8436
steps = 88, shift = 34.5, angle = 16.1 degrees
Position of map 5 (#61) relative to ref_s114_8_symmetrized.em scaled (#22)
coordinates:
Matrix rotation and translation
0.99433066 -0.10612973 0.00655912 13.24617429
0.10561848 0.97864038 -0.17637387 97.76850483
0.01229949 0.17606671 0.98430139 -203.36458032
Axis 0.85710467 -0.01396009 0.51495310
Axis point 0.00000000 916.82309117 435.79587291
Rotation angle (degrees) 11.86459561
Shift along axis -94.73472126
Average map value = 0.04593 for 135371 atoms, 78850 outside contour
Average map value = 0.04143 for 135371 atoms, 87409 outside contour
Correlation = 0.7636, Correlation about mean = 0.002241, Overlap = 7603
> fitmap sel inMap #22 resolution 5 metric cam
Fit map map 5 in map ref_s114_8_symmetrized.em scaled using 517233 points
correlation = 0.7515, correlation about mean = 0.009778, overlap = 7556
steps = 88, shift = 11.6, angle = 15.2 degrees
Position of map 5 (#61) relative to ref_s114_8_symmetrized.em scaled (#22)
coordinates:
Matrix rotation and translation
0.90021108 -0.39271725 0.18813075 354.51999680
0.36399997 0.91577240 0.16989685 -354.45717546
-0.23900637 -0.08446344 0.96733752 398.08312585
Axis -0.28093399 0.47176129 0.83577352
Axis point 1207.95311902 642.93278989 0.00000000
Rotation angle (degrees) 26.91734829
Shift along axis 65.89144332
Average map value = 0.04112 for 135371 atoms, 86650 outside contour
> select #33,34,37,38,41,45-50
182469 atoms, 186348 bonds, 4 pseudobonds, 22818 residues, 13 models selected
Opened map 5 as #62, grid size 300,291,181, pixel 1.67, shown at level 0.0978,
step 1, values float32
> fitmap sel inMap #22 resolution 5 metric cam
Fit map map 5 in map ref_s114_8_symmetrized.em scaled using 699485 points
correlation = 0.7102, correlation about mean = 0.01257, overlap = 1.126e+04
steps = 88, shift = 6.64, angle = 10.8 degrees
Position of map 5 (#62) relative to ref_s114_8_symmetrized.em scaled (#22)
coordinates:
Matrix rotation and translation
0.96842465 -0.24758374 0.02925719 171.88499938
0.24875664 0.96740146 -0.04748216 -125.75486552
-0.01654764 0.05326081 0.99844352 -43.94156834
Axis 0.19810691 0.09007332 0.97603302
Axis point 581.60515752 636.20993654 0.00000000
Rotation angle (degrees) 14.72998625
Shift along axis -20.16397247
Average map value = 0.04543 for 182469 atoms, 98736 outside contour
> volume #27 level 0.03564
> select #42,44,52-59,60
295428 atoms, 301444 bonds, 14 pseudobonds, 37714 residues, 17 models selected
> color (#56-60#!42,44,52-55 & sel) orange red
> color (#56-60#!42,44,52-55 & sel) hot pink
> volume #27 level 0.01888
> volume #27 level 0.04226
Opened map 5 as #63, grid size 406,391,198, pixel 1.67, shown at level 0.0945,
step 1, values float32
> fitmap sel inMap #22 resolution 5 metric cam
Fit map map 5 in map ref_s114_8_symmetrized.em scaled using 1147433 points
correlation = 0.6019, correlation about mean = 0.01254, overlap = 1.381e+04
steps = 72, shift = 7.07, angle = 3.85 degrees
Position of map 5 (#63) relative to ref_s114_8_symmetrized.em scaled (#22)
coordinates:
Matrix rotation and translation
0.94608647 -0.31689192 0.06708123 254.88742675
0.31749742 0.94825758 0.00171668 -222.53407273
-0.06415429 0.01967399 0.99774604 54.49434570
Axis 0.02770890 0.20250199 0.97888976
Axis point 818.84623269 663.68179793 0.00000000
Rotation angle (degrees) 18.90712889
Shift along axis 15.34301389
Average map value = 0.03446 for 295412 atoms, 192237 outside contour
> select clear
> cd ../s114_fits
Current working directory is: /Users/kosinski/Desktop/FluNPC_paper/s114_fits
> save /Users/kosinski/Desktop/FluNPC_paper/s114_fits/[NAME] models #33-60
> selectedOnly false relModel #5
Cannot determine format for
'/Users/kosinski/Desktop/FluNPC_paper/s114_fits/[NAME]'
> save [NAME] models #33-60 selectedOnly false relModel #5 format pdb
> open s114_unit_fit.cif
Summary of feedback from opening s114_unit_fit.cif
---
warnings | Missing entity information. Treating each chain as a separate entity.
Missing or incomplete sequence information. Inferred polymer connectivity.
Chain information for s114_unit_fit.cif #64
---
Chain | Description
00 10 20 30 40 50 60 70 | No description available
01 02 03 04 05 | No description available
41 42 | No description available
A0 | No description available
A1 A2 | No description available
A3 A4 | No description available
A5 A6 A7 A8 | No description available
B0 B1 | No description available
C0 C1 C2 C3 C4 | No description available
D0 D2 | No description available
D1 D3 | No description available
D4 D5 D6 D7 | No description available
E0 E1 | No description available
F0 F1 F2 F3 | No description available
F4 F5 F6 F7 | No description available
H0 H1 H2 H3 | No description available
I0 I1 I2 I3 | No description available
J0 J1 J2 J3 J4 | No description available
K0 K1 K2 K3 | No description available
K4 K5 K6 K7 | No description available
L0 L1 L2 L3 | No description available
M0 M1 M2 M3 | No description available
N0 N1 N2 N3 | No description available
O0 O1 O2 O3 | No description available
P0 P1 P2 P3 | No description available
Q0 Q1 Q2 Q3 | No description available
R0 R1 R2 R3 | No description available
S0 S1 S2 S3 | No description available
T0 T1 | No description available
U0 | No description available
U1 U2 U3 U4 | No description available
V0 | No description available
W0 | No description available
> close #64
> close #61-63
> show #!28 models
> hide #!27 models
> select #33,34,37,38,41,45-50
182469 atoms, 186348 bonds, 4 pseudobonds, 22818 residues, 13 models selected
Opened map 5 as #61, grid size 300,291,181, pixel 1.67, shown at level 0.0978,
step 1, values float32
> fitmap sel inMap #28 resolution 5 metric cam
Fit map map 5 in map ref_s127_8_symmetrized.em scaled gaussian10 using 699485
points
correlation = 0.7643, correlation about mean = 0.014, overlap = 1.283e+04
steps = 72, shift = 21.9, angle = 3.9 degrees
Position of map 5 (#61) relative to ref_s127_8_symmetrized.em scaled
gaussian10 (#28) coordinates:
Matrix rotation and translation
0.94757032 0.31743914 0.03664523 -271.47506028
-0.31624790 0.94803656 -0.03484183 367.69147701
-0.04580118 0.02142610 0.99872077 9.48515239
Axis 0.08771301 0.12852122 -0.98782019
Axis point 988.95044591 1022.43201598 0.00000000
Rotation angle (degrees) 18.70829966
Shift along axis 14.07463752
Average map value = 0.05178 for 182469 atoms, 52300 outside contour
> volume #28 level 0.02258
> volume #28 level 0.0297
> select #35,36,39,40,43,51
135371 atoms, 138333 bonds, 4 pseudobonds, 16966 residues, 8 models selected
Opened map 5 as #62, grid size 279,311,161, pixel 1.67, shown at level 0.099,
step 1, values float32
> fitmap sel inMap #28 resolution 5 metric cam
Fit map map 5 in map ref_s127_8_symmetrized.em scaled gaussian10 using 517233
points
correlation = 0.8117, correlation about mean = 0.01121, overlap = 9933
steps = 80, shift = 48.4, angle = 5.96 degrees
Position of map 5 (#62) relative to ref_s127_8_symmetrized.em scaled
gaussian10 (#28) coordinates:
Matrix rotation and translation
0.95315639 0.25655904 0.16021971 -266.02426514
-0.26717242 0.96243875 0.04827584 226.94920270
-0.14181605 -0.08882071 0.98590014 316.16898661
Axis -0.22114773 0.48720788 -0.84482079
Axis point 848.23046240 1275.98494096 0.00000000
Rotation angle (degrees) 18.05718192
Shift along axis -97.70403190
Average map value = 0.05407 for 135371 atoms, 22393 outside contour
> volume #28 level 0.05193
> fitmap sel inMap #28 resolution 5 metric cam
Fit map map 5 in map ref_s127_8_symmetrized.em scaled gaussian10 using 517233
points
correlation = 0.8117, correlation about mean = 0.01121, overlap = 9933
steps = 80, shift = 48.4, angle = 5.96 degrees
Position of map 5 (#62) relative to ref_s127_8_symmetrized.em scaled
gaussian10 (#28) coordinates:
Matrix rotation and translation
0.95315639 0.25655904 0.16021971 -266.02426514
-0.26717242 0.96243875 0.04827584 226.94920270
-0.14181605 -0.08882071 0.98590014 316.16898661
Axis -0.22114773 0.48720788 -0.84482079
Axis point 848.23046240 1275.98494096 0.00000000
Rotation angle (degrees) 18.05718192
Shift along axis -97.70403190
Average map value = 0.05407 for 135371 atoms, 61352 outside contour
> select #42,44,52-59,60
295428 atoms, 301444 bonds, 14 pseudobonds, 37714 residues, 17 models selected
Opened map 5 as #63, grid size 406,391,198, pixel 1.67, shown at level 0.0945,
step 1, values float32
> fitmap sel inMap #28 resolution 5 metric cam
Fit map map 5 in map ref_s127_8_symmetrized.em scaled gaussian10 using 1147433
points
correlation = 0.6655, correlation about mean = 0.01359, overlap = 1.44e+04
steps = 60, shift = 34.3, angle = 1.56 degrees
Position of map 5 (#63) relative to ref_s127_8_symmetrized.em scaled
gaussian10 (#28) coordinates:
Matrix rotation and translation
0.95164235 0.29602862 0.08212118 -253.75691069
-0.29420955 0.95514624 -0.03371053 344.60483176
-0.08841701 0.00791954 0.99605206 104.19916636
Axis 0.06760432 0.27694208 -0.95850547
Axis point 1035.88666133 1021.48921398 0.00000000
Rotation angle (degrees) 17.93242176
Shift along axis -21.59495385
Average map value = 0.03694 for 287357 atoms, 196532 outside contour
> select #42,44,52-59
183060 atoms, 186644 bonds, 14 pseudobonds, 23066 residues, 16 models selected
Opened map 5 as #64, grid size 235,211,198, pixel 1.67, shown at level 0.0961,
step 1, values float32
> fitmap sel inMap #28 resolution 5 metric cam
Fit map map 5 in map ref_s127_8_symmetrized.em scaled gaussian10 using 705734
points
correlation = 0.7947, correlation about mean = 0.006114, overlap = 1.29e+04
steps = 56, shift = 29, angle = 5.78 degrees
Position of map 5 (#64) relative to ref_s127_8_symmetrized.em scaled
gaussian10 (#28) coordinates:
Matrix rotation and translation
0.96050351 0.24998890 0.12222339 -248.27092262
-0.25465330 0.96673688 0.02390625 228.98033169
-0.11218156 -0.05408663 0.99221466 207.33896756
Axis -0.13881071 0.41719084 -0.89815555
Axis point 840.16624667 1157.09167349 0.00000000
Rotation angle (degrees) 16.31586813
Shift along axis -56.23148345
Average map value = 0.05199 for 183060 atoms, 89680 outside contour
> volume #28 level 0.01991
> volume #28 level 0.0417
> cd s127_fits
Expected name of a folder to open/read; a name of 'browse' will bring up a
file browser or a keyword
> cd ../s127_fits
Current working directory is: /Users/kosinski/Desktop/FluNPC_paper/s127_fits
> cd ..
Current working directory is: /Users/kosinski/Desktop/FluNPC_paper
> save s127_fits/[NAME] models #33-60 selectedOnly false relModel #5 format
> pdb
> open s127_fits/s127_unit_fit.cif
Summary of feedback from opening s127_fits/s127_unit_fit.cif
---
warnings | Missing entity information. Treating each chain as a separate entity.
Missing or incomplete sequence information. Inferred polymer connectivity.
Chain information for s127_unit_fit.cif #65
---
Chain | Description
00 10 20 30 40 50 60 70 | No description available
01 02 03 04 05 | No description available
41 42 | No description available
A0 | No description available
A1 A2 | No description available
A3 A4 | No description available
A5 A6 A7 A8 | No description available
B0 B1 | No description available
C0 C1 C2 C3 C4 | No description available
D0 D2 | No description available
D1 D3 | No description available
D4 D5 D6 D7 | No description available
E0 E1 | No description available
F0 F1 F2 F3 | No description available
F4 F5 F6 F7 | No description available
H0 H1 H2 H3 | No description available
I0 I1 I2 I3 | No description available
J0 J1 J2 J3 J4 | No description available
K0 K1 K2 K3 | No description available
K4 K5 K6 K7 | No description available
L0 L1 L2 L3 | No description available
M0 M1 M2 M3 | No description available
N0 N1 N2 N3 | No description available
O0 O1 O2 O3 | No description available
P0 P1 P2 P3 | No description available
Q0 Q1 Q2 Q3 | No description available
R0 R1 R2 R3 | No description available
S0 S1 S2 S3 | No description available
T0 T1 | No description available
U0 | No description available
U1 U2 U3 U4 | No description available
V0 | No description available
W0 | No description available
> close #65
> hide #!28 models
> show #!29 models
> select #33,34,37,38,41,45-50
182469 atoms, 186348 bonds, 4 pseudobonds, 22818 residues, 13 models selected
> fitmap sel inMap #29 resolution 5 metric cam
Fit map map 5 in map ref_s140_8_symmetrized.em scaled gaussian15 using 699485
points
correlation = 0.6454, correlation about mean = 0.01026, overlap = 6685
steps = 80, shift = 46.7, angle = 17.2 degrees
Position of map 5 (#61) relative to ref_s140_8_symmetrized.em scaled
gaussian15 (#29) coordinates:
Matrix rotation and translation
0.96537112 0.26039664 -0.01588059 -197.40121007
-0.25217799 0.91584624 -0.31246109 716.40935231
-0.06681963 0.30564564 0.94979781 -267.09226544
Axis 0.76821481 0.06330966 -0.63705408
Axis point -0.00000000 1067.97880210 1992.22209732
Rotation angle (degrees) 23.72208628
Shift along axis 63.86131610
Average map value = 0.02701 for 182469 atoms, 102303 outside contour
> volume #29 level 0.01509
> volume #29 level 0.01072
> fitmap sel inMap #29 resolution 5 metric cam
Fit map map 5 in map ref_s140_8_symmetrized.em scaled gaussian15 using 699485
points
correlation = 0.6454, correlation about mean = 0.01026, overlap = 6685
steps = 80, shift = 46.7, angle = 17.2 degrees
Position of map 5 (#61) relative to ref_s140_8_symmetrized.em scaled
gaussian15 (#29) coordinates:
Matrix rotation and translation
0.96537112 0.26039664 -0.01588059 -197.40121007
-0.25217799 0.91584624 -0.31246109 716.40935231
-0.06681963 0.30564564 0.94979781 -267.09226544
Axis 0.76821481 0.06330966 -0.63705408
Axis point 0.00000000 1067.97880210 1992.22209732
Rotation angle (degrees) 23.72208628
Shift along axis 63.86131610
Average map value = 0.02701 for 182469 atoms, 54508 outside contour
> fitmap sel inMap #24 resolution 5 metric cam
Fit map map 5 in map ref_s140_8_symmetrized.em scaled using 699485 points
correlation = 0.5764, correlation about mean = 0.007842, overlap = 9547
steps = 84, shift = 17, angle = 7.48 degrees
Position of map 5 (#61) relative to ref_s140_8_symmetrized.em scaled (#24)
coordinates:
Matrix rotation and translation
0.94826186 0.30065651 0.10200548 -351.66313708
-0.30289503 0.95299933 0.00684622 336.77051013
-0.09515279 -0.03738897 0.99476028 155.43945501
Axis -0.06950010 0.30976511 -0.94826964
Axis point 924.06017913 1332.97513734 0.00000000
Rotation angle (degrees) 18.55642133
Shift along axis -18.63814008
Average map value = 0.03856 for 182469 atoms, 127872 outside contour
> volume #29 level 0.02821
> volume #29 level 0.01692
> select #35,36,39,40,43,51
135371 atoms, 138333 bonds, 4 pseudobonds, 16966 residues, 8 models selected
> fitmap sel inMap #24 resolution 5 metric cam
Fit map map 5 in map ref_s140_8_symmetrized.em scaled using 517233 points
correlation = 0.7022, correlation about mean = 0.008504, overlap = 8796
steps = 112, shift = 25.7, angle = 6.72 degrees
Position of map 5 (#62) relative to ref_s140_8_symmetrized.em scaled (#24)
coordinates:
Matrix rotation and translation
0.95093702 0.18942199 0.24461827 -265.14887053
-0.21837667 0.97103186 0.09699874 201.75367205
-0.21915844 -0.14565862 0.96475548 504.26581864
Axis -0.36570705 0.69895435 -0.61459025
Axis point 1847.97862242 0.00000000 1562.11871497
Rotation angle (degrees) 19.37591866
Shift along axis -71.93343665
Average map value = 0.04787 for 135371 atoms, 91671 outside contour
> volume #29 level 0.04024
> fitmap sel inMap #29 resolution 5 metric cam
Fit map map 5 in map ref_s140_8_symmetrized.em scaled gaussian15 using 517233
points
correlation = 0.8132, correlation about mean = 0.009664, overlap = 7871
steps = 72, shift = 31.6, angle = 12.3 degrees
Position of map 5 (#62) relative to ref_s140_8_symmetrized.em scaled
gaussian15 (#29) coordinates:
Matrix rotation and translation
0.93446871 0.11487327 0.33700499 -214.87882254
-0.17750942 0.97081142 0.16129350 119.48809730
-0.30863998 -0.21054529 0.92758398 719.34252275
Axis -0.46457745 0.80667241 -0.36530456
Axis point 1989.97702753 0.00000000 1116.32913075
Rotation angle (degrees) 23.59007627
Shift along axis -66.56349771
Average map value = 0.04286 for 135371 atoms, 59626 outside contour
> fitmap sel inMap #24 resolution 5 metric cam
Fit map map 5 in map ref_s140_8_symmetrized.em scaled using 517233 points
correlation = 0.7022, correlation about mean = 0.008504, overlap = 8796
steps = 112, shift = 25.7, angle = 6.72 degrees
Position of map 5 (#62) relative to ref_s140_8_symmetrized.em scaled (#24)
coordinates:
Matrix rotation and translation
0.95093702 0.18942199 0.24461827 -265.14887053
-0.21837667 0.97103186 0.09699874 201.75367205
-0.21915844 -0.14565862 0.96475548 504.26581864
Axis -0.36570705 0.69895435 -0.61459025
Axis point 1847.97862242 0.00000000 1562.11871497
Rotation angle (degrees) 19.37591866
Shift along axis -71.93343665
Average map value = 0.04787 for 135371 atoms, 91671 outside contour
> volume #29 level 0.05664
> volume #29 level 0.03842
> select #42,44,52-59
183060 atoms, 186644 bonds, 14 pseudobonds, 23066 residues, 16 models selected
> volume #29 level 0.02821
> volume #29 level 0.0191
> volume #29 level 0.04607
> volume #29 level 0.03186
> show #!30 models
> hide #!29 models
> volume #30 level 0.02765
> fitmap sel inMap #30 resolution 5 metric cam
Fit map map 5 in map ref_s140_8_symmetrized.em scaled gaussian30 using 705734
points
correlation = 0.7739, correlation about mean = 0.003967, overlap = 6266
steps = 180, shift = 76, angle = 71.1 degrees
Position of map 5 (#64) relative to ref_s140_8_symmetrized.em scaled
gaussian30 (#30) coordinates:
Matrix rotation and translation
0.28354390 0.84824112 -0.44731404 376.54979096
-0.93641570 0.34545827 0.06151596 1727.35374663
0.20670870 0.40142942 0.89225889 -614.54698570
Axis 0.17604095 -0.33871793 -0.92427255
Axis point 1361.67788369 716.41876548 0.00000000
Rotation angle (degrees) 74.89252106
Shift along axis 49.21139834
Average map value = 0.02527 for 183060 atoms, 105203 outside contour
> volume #30 level 0.0234
> fitmap sel inMap #30 resolution 5 metric cam
Fit map map 5 in map ref_s140_8_symmetrized.em scaled gaussian30 using 705734
points
correlation = 0.7739, correlation about mean = 0.003967, overlap = 6266
steps = 180, shift = 76, angle = 71.1 degrees
Position of map 5 (#64) relative to ref_s140_8_symmetrized.em scaled
gaussian30 (#30) coordinates:
Matrix rotation and translation
0.28354390 0.84824112 -0.44731404 376.54979096
-0.93641570 0.34545827 0.06151596 1727.35374663
0.20670870 0.40142942 0.89225889 -614.54698570
Axis 0.17604095 -0.33871793 -0.92427255
Axis point 1361.67788369 716.41876548 0.00000000
Rotation angle (degrees) 74.89252106
Shift along axis 49.21139834
Average map value = 0.02527 for 183060 atoms, 83629 outside contour
> fitmap sel inMap #30 resolution 5
Fit map map 5 in map ref_s140_8_symmetrized.em scaled gaussian30 using 705734
points
correlation = 0.8526, correlation about mean = 0.0007888, overlap = 9523
steps = 88, shift = 106, angle = 36 degrees
Position of map 5 (#64) relative to ref_s140_8_symmetrized.em scaled
gaussian30 (#30) coordinates:
Matrix rotation and translation
0.82662429 0.50727871 -0.24364030 -36.97723621
-0.41377261 0.84131241 0.34782993 422.68841509
0.38142433 -0.18671299 0.90534730 -158.02044533
Axis -0.43289180 -0.50619947 -0.74589998
Axis point 768.64884573 403.94482171 0.00000000
Rotation angle (degrees) 38.12720074
Shift along axis -80.09006414
Average map value = 0.03839 for 183060 atoms, 14970 outside contour
> show #!29 models
> hide #!30 models
> fitmap sel inMap #29 resolution 5
Fit map map 5 in map ref_s140_8_symmetrized.em scaled gaussian15 using 705734
points
correlation = 0.8061, correlation about mean = 0.0001589, overlap = 1.038e+04
steps = 96, shift = 98.3, angle = 33.1 degrees
Position of map 5 (#64) relative to ref_s140_8_symmetrized.em scaled
gaussian15 (#29) coordinates:
Matrix rotation and translation
0.84211124 0.50515028 -0.18886995 -95.04569615
-0.43602447 0.84382563 0.31279541 461.40672991
0.31738200 -0.18105661 0.93085293 -104.78444961
Axis -0.41948523 -0.43001790 -0.79944778
Axis point 804.74480270 501.77564385 0.00000000
Rotation angle (degrees) 36.06059638
Shift along axis -74.77319354
Average map value = 0.04184 for 183060 atoms, 53556 outside contour
> show #!30 models
> hide #!29 models
> volume #30 level 0.02744
> hide #!30 models
> show #!29 models
> show #!30 models
> hide #!29 models
> save s140_fits/[NAME] models #33-60 selectedOnly false relModel #5 format
> pdb
Cannot save 's140_fits/[NAME]': Unable to open file 's140_fits/Y_CRinner.pdb'
for writing
> cd ..
Current working directory is: /Users/kosinski/Desktop
> save s140_fits/[NAME] models #33-60 selectedOnly false relModel #5 format
> pdb
Cannot save 's140_fits/[NAME]': Unable to open file 's140_fits/Y_CRinner.pdb'
for writing
> cd /Users/kosinski/Desktop/FluNPC_paper
Current working directory is: /Users/kosinski/Desktop/FluNPC_paper
> save s140_fits/[NAME] models #33-60 selectedOnly false relModel #5 format
> pdb
> open s140_fits/s140_unit_fit.cif
Summary of feedback from opening s140_fits/s140_unit_fit.cif
---
warnings | Missing entity information. Treating each chain as a separate entity.
Missing or incomplete sequence information. Inferred polymer connectivity.
Chain information for s140_unit_fit.cif #65
---
Chain | Description
00 10 20 30 40 50 60 70 | No description available
01 02 03 04 05 | No description available
41 42 | No description available
A0 | No description available
A1 A2 | No description available
A3 A4 | No description available
A5 A6 A7 A8 | No description available
B0 B1 | No description available
C0 C1 C2 C3 C4 | No description available
D0 D2 | No description available
D1 D3 | No description available
D4 D5 D6 D7 | No description available
E0 E1 | No description available
F0 F1 F2 F3 | No description available
F4 F5 F6 F7 | No description available
H0 H1 H2 H3 | No description available
I0 I1 I2 I3 | No description available
J0 J1 J2 J3 J4 | No description available
K0 K1 K2 K3 | No description available
K4 K5 K6 K7 | No description available
L0 L1 L2 L3 | No description available
M0 M1 M2 M3 | No description available
N0 N1 N2 N3 | No description available
O0 O1 O2 O3 | No description available
P0 P1 P2 P3 | No description available
Q0 Q1 Q2 Q3 | No description available
R0 R1 R2 R3 | No description available
S0 S1 S2 S3 | No description available
T0 T1 | No description available
U0 | No description available
U1 U2 U3 U4 | No description available
V0 | No description available
W0 | No description available
> close #65
> hide #!30 models
> show #!31 models
> select clear
> ui tool show "Side View"
> view
> volume zone #31 nearAtoms 33-60 nearAtoms 20
Invalid "nearAtoms" argument: invalid atoms specifier
> volume zone #31 nearAtoms 33-60 range 20
Invalid "nearAtoms" argument: invalid atoms specifier
> volume zone #31 nearAtoms #33-60 range 20
> volume #31 level 0.01321
> volume zone #31 nearAtoms #33-60 range 40
> volume zone #31 nearAtoms #33-60 range 40 newMap true
Opened ref_s162_8_symmetrized.em scaled gaussian30 zone as #65, grid size
128,128,128, pixel 13.3, shown at step 1, values float32
> volume #65 color #b2b2ff62
> volume #65 color #b2b2ff61
> close #65
> volume zone #31 nearAtoms #33-60 range 60 newMap true
Opened ref_s162_8_symmetrized.em scaled gaussian30 zone as #65, grid size
128,128,128, pixel 13.3, shown at step 1, values float32
> volume #65 color #ffb2ff62
> volume #65 color #ffb2ff61
> select #33,34,37,38,41,45-50
182469 atoms, 186348 bonds, 4 pseudobonds, 22818 residues, 13 models selected
> fitmap sel inMap #31 resolution 5
Fit map map 5 in map ref_s162_8_symmetrized.em scaled gaussian30 using 699485
points
correlation = 0.6672, correlation about mean = 0.003878, overlap = 4637
steps = 440, shift = 15.5, angle = 34.2 degrees
Position of map 5 (#61) relative to ref_s162_8_symmetrized.em scaled
gaussian30 (#31) coordinates:
Matrix rotation and translation
0.71627592 -0.67424908 0.17982488 790.61443806
0.54608762 0.70203488 0.45709445 -706.08014788
-0.43443885 -0.22920560 0.87104975 908.31094446
Axis -0.44888350 0.40176720 0.79817713
Axis point 1649.11455071 536.17154007 0.00000000
Rotation angle (degrees) 49.85829224
Shift along axis 86.41940099
Average map value = 0.01876 for 182469 atoms, 64754 outside contour
> show #!31 models
> volume unzone #31
> volume #65 level 0.001727
> volume #31 level 0.001472
> fitmap sel inMap #65 resolution 5
Fit map map 5 in map ref_s162_8_symmetrized.em scaled gaussian30 zone using
699485 points
correlation = 0.6642, correlation about mean = 0.004073, overlap = 4582
steps = 144, shift = 26.2, angle = 20.4 degrees
Position of map 5 (#61) relative to ref_s162_8_symmetrized.em scaled
gaussian30 zone (#65) coordinates:
Matrix rotation and translation
0.85060397 -0.46504078 0.24537717 331.12306823
0.38492638 0.86864503 0.31190943 -557.24031715
-0.35819627 -0.17085925 0.91787938 698.34484741
Axis -0.42022634 0.52538093 0.73985451
Axis point 1651.42267052 258.09982776 0.00000000
Rotation angle (degrees) 35.05867901
Shift along axis 84.76351521
Average map value = 0.01854 for 182469 atoms, 32229 outside contour
> volume #65 level 0.01584
> volume #65 level 0.001727
> show #!31 models
> volume #31 level 0.01224
> select #42,44,52-59
183060 atoms, 186644 bonds, 14 pseudobonds, 23066 residues, 16 models selected
> select #35,36,39,40,43,51
135371 atoms, 138333 bonds, 4 pseudobonds, 16966 residues, 8 models selected
> volume #65 level 0.01397
> fitmap sel inMap #65 resolution 5
Fit map map 5 in map ref_s162_8_symmetrized.em scaled gaussian30 zone using
517233 points
correlation = 0.8408, correlation about mean = 0.007212, overlap = 6166
steps = 88, shift = 78.7, angle = 20.9 degrees
Position of map 5 (#62) relative to ref_s162_8_symmetrized.em scaled
gaussian30 zone (#65) coordinates:
Matrix rotation and translation
0.97656043 -0.21216629 0.03626551 127.97144758
0.21468675 0.97221958 -0.09326676 -61.50392883
-0.01546998 0.09886636 0.99498046 -22.41543771
Axis 0.40796805 0.10985315 0.90636326
Axis point 365.90814853 514.40928313 0.00000000
Rotation angle (degrees) 13.61966493
Shift along axis 25.13533229
Average map value = 0.0336 for 135371 atoms, 4454 outside contour
> volume #65 level 0.02723
> fitmap sel inMap #65 resolution 5
Fit map map 5 in map ref_s162_8_symmetrized.em scaled gaussian30 zone using
517233 points
correlation = 0.8408, correlation about mean = 0.007212, overlap = 6166
steps = 88, shift = 78.7, angle = 20.9 degrees
Position of map 5 (#62) relative to ref_s162_8_symmetrized.em scaled
gaussian30 zone (#65) coordinates:
Matrix rotation and translation
0.97656043 -0.21216629 0.03626551 127.97144758
0.21468675 0.97221958 -0.09326676 -61.50392883
-0.01546998 0.09886636 0.99498046 -22.41543771
Axis 0.40796805 0.10985315 0.90636326
Axis point 365.90814853 514.40928313 0.00000000
Rotation angle (degrees) 13.61966493
Shift along axis 25.13533229
Average map value = 0.0336 for 135371 atoms, 42029 outside contour
> fitmap sel inMap #65 resolution 5
Fit map map 5 in map ref_s162_8_symmetrized.em scaled gaussian30 zone using
517233 points
correlation = 0.8408, correlation about mean = 0.007212, overlap = 6166
steps = 88, shift = 78.7, angle = 20.9 degrees
Position of map 5 (#62) relative to ref_s162_8_symmetrized.em scaled
gaussian30 zone (#65) coordinates:
Matrix rotation and translation
0.97656043 -0.21216629 0.03626551 127.97144758
0.21468675 0.97221958 -0.09326676 -61.50392883
-0.01546998 0.09886636 0.99498046 -22.41543771
Axis 0.40796805 0.10985315 0.90636326
Axis point 365.90814853 514.40928313 0.00000000
Rotation angle (degrees) 13.61966493
Shift along axis 25.13533229
Average map value = 0.0336 for 135371 atoms, 42029 outside contour
> fitmap sel inMap #65 resolution 5 metric cam
Fit map map 5 in map ref_s162_8_symmetrized.em scaled gaussian30 zone using
517233 points
correlation = 0.8053, correlation about mean = 0.00637, overlap = 5243
steps = 84, shift = 37.4, angle = 31.9 degrees
Position of map 5 (#62) relative to ref_s162_8_symmetrized.em scaled
gaussian30 zone (#65) coordinates:
Matrix rotation and translation
0.79902921 -0.45534728 0.39269730 363.23846334
0.13675962 0.77359578 0.61874581 -148.32875041
-0.58553320 -0.44069084 0.68039875 1510.51664433
Axis -0.67963851 0.62754400 0.37984211
Axis point 0.00000000 2276.22663450 1309.74376032
Rotation angle (degrees) 51.20675903
Shift along axis 233.80415930
Average map value = 0.02857 for 135371 atoms, 59181 outside contour
> volume #65 level 0.01618
> volume #65 level 0.01176
> close #61-65
> select clear
> save /Users/kosinski/Desktop/FluNPC_paper/all_maps.cxs includeMaps true
——— End of log from Sat Dec 7 12:59:06 2024 ———
opened ChimeraX session
> close #33-100
> hide target m
> open ../s127_fits/s127_CR.cif
Chain information for s127_CR.cif
---
Chain | Description
33.6/0 33.7/0 33.8/0 33.9/0 33.10/0 | No description available
33.1/A 33.2/A | No description available
33.11/A | No description available
33.1/C 33.2/C | No description available
33.5/D | No description available
33.2/J | No description available
33.1/K 33.2/K | No description available
33.3/K 33.4/K | No description available
33.1/L 33.2/L | No description available
33.1/M 33.2/M | No description available
33.1/N 33.2/N | No description available
33.1/O 33.2/O | No description available
33.1/P 33.2/P | No description available
33.1/Q 33.2/Q | No description available
33.1/R 33.2/R | No description available
33.1/S 33.2/S | No description available
33.2/U | No description available
33.2/V | No description available
33.2/W | No description available
> open ../s127_fits/s127_Gp210.cif
Chain information for s127_Gp210.cif #34
---
Chain | Description
10 11 12 13 14 15 16 17 | No description available
> open ../s127_fits/s127_IR.cif
Summary of feedback from opening ../s127_fits/s127_IR.cif
---
warnings | Unknown polymer entity '1' on line 106
Missing or incomplete sequence information. Inferred polymer connectivity.
Unknown polymer entity '1' on line 6406
Missing or incomplete sequence information. Inferred polymer connectivity.
Chain information for s127_IR.cif
---
Chain | Description
35.3/4 35.5/4 | No description available
35.3/A 35.4/A 35.5/A 35.6/A | No description available
35.4/B 35.6/B | No description available
35.3/C 35.5/C | No description available
35.1/D 35.2/D | No description available
35.3/D 35.4/D 35.5/D 35.6/D | No description available
35.3/E 35.5/E | No description available
35.3/F 35.4/F 35.5/F 35.6/F | No description available
35.7/F 35.8/F 35.9/F 35.10/F | No description available
35.3/H 35.4/H 35.5/H 35.6/H | No description available
35.3/I 35.4/I 35.5/I 35.6/I | No description available
35.3/J 35.4/J 35.5/J 35.6/J | No description available
35.3/U 35.4/U 35.5/U 35.6/U | No description available
> open ../s127_fits/s127_NR.cif
Chain information for s127_NR.cif
---
Chain | Description
36.2/A | No description available
36.6/A | No description available
36.2/C | No description available
36.5/D | No description available
36.1/K 36.2/K | No description available
36.3/K 36.4/K | No description available
36.1/L 36.2/L | No description available
36.1/M 36.2/M | No description available
36.1/N 36.2/N | No description available
36.1/O 36.2/O | No description available
36.1/P 36.2/P | No description available
36.1/Q 36.2/Q | No description available
36.1/R 36.2/R | No description available
36.1/S 36.2/S | No description available
36.1/T 36.2/T | No description available
> color #33,36,37,40,41,44 royal blue
> color #35,39,43 deep pink
> color #34,38,42 light slate gray
> hide atoms
> show cartoons
> show #23 models
> surface dust #23 size 400
> color #23 #929292
> transparency #23 30
> volume #23 level 0.025
> volume erase #23 center 839.61,848.11,851.74 radius 312.09
> set bgColor white
> lighting soft
> lighting ambientIntensity 1.4
> material ambientReflectivity 1
> lighting shadows false
> lighting depthCue false
> graphics silhouettes true color black
> graphics silhouettes true width 3
> ribbon style width 3 thick 1
> measure symmetry #28
Symmetry ref_s127_8_symmetrized.em scaled gaussian10: C8, center 64 64 64
> sym #33-36 symmetry #28
Made 8 copies for s127_CR.cif, s127_CR.cif, s127_CR.cif, s127_CR.cif,
s127_CR.cif, s127_CR.cif, s127_CR.cif, s127_CR.cif, s127_CR.cif, s127_CR.cif,
s127_CR.cif, s127_Gp210.cif, s127_IR.cif, s127_IR.cif, s127_IR.cif,
s127_IR.cif, s127_IR.cif, s127_IR.cif, s127_IR.cif, s127_IR.cif, s127_IR.cif,
s127_IR.cif, s127_NR.cif, s127_NR.cif, s127_NR.cif, s127_NR.cif, s127_NR.cif,
s127_NR.cif symmetry #28
> hide #!37 models
> volume #23 level 0.025
> volume #23 level 0.05109
> surface dust #23 size 400
> hide #!36 models
> show #!36 models
> show #!37 models
> hide #!37.2-8 target m
> volume #23 level 0.04385
> volume #23 level 0.0337
> volume #23 level 0.025
> ui tool show "Side View"
> show #!37.2-8 target m
> hide #!37.2-8 target m
> show #!37.2-8 target m
> view name CR_zoom
> close #34,36#35.7-10#33,35,37#35.1-6
> save ../fitting1.cxs includeMaps true
——— End of log from Sat Feb 15 22:04:14 2025 ———
opened ChimeraX session
OpenGL version: 4.1 Metal - 88.1
OpenGL renderer: Apple M2 Pro
OpenGL vendor: Apple
Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: Mac14,9
Model Number: Z17G002M6D/A
Chip: Apple M2 Pro
Total Number of Cores: 10 (6 performance and 4 efficiency)
Memory: 32 GB
System Firmware Version: 10151.121.1
OS Loader Version: 10151.121.1
Software:
System Software Overview:
System Version: macOS 14.5 (23F79)
Kernel Version: Darwin 23.5.0
Time since boot: 67 days, 12 hours, 40 minutes
Graphics/Displays:
Apple M2 Pro:
Chipset Model: Apple M2 Pro
Type: GPU
Bus: Built-In
Total Number of Cores: 16
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
DELL U2718Q:
Resolution: 5120 x 2880 (5K/UHD+ - Ultra High Definition Plus)
UI Looks like: 2560 x 1440 @ 60.00Hz
Main Display: Yes
Mirror: Off
Online: Yes
Rotation: Supported
Installed Packages:
alabaster: 0.7.16
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 2.4.1
Babel: 2.15.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 2.0.0
build: 1.2.1
certifi: 2023.11.17
cftime: 1.6.4
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.17
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.7
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.57.1
ChimeraX-AtomicLibrary: 14.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.4.6
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.12.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.7
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.8
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.3
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.4
ChimeraX-DiffPlot: 1.0
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.10
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.3
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.1
ChimeraX-MedicalToolbar: 1.0.3
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.17
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.5
ChimeraX-PDB: 2.7.5
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.1
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.4.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.0.15
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.16.5
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.39.1
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.3
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.2.1
cxservices: 1.2.2
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.1
decorator: 5.1.1
docutils: 0.20.1
executing: 2.0.1
filelock: 3.13.4
fonttools: 4.53.0
funcparserlib: 2.0.0a0
glfw: 2.7.0
grako: 3.16.5
h5py: 3.11.0
html2text: 2024.2.26
idna: 3.7
ihm: 1.0
imagecodecs: 2024.1.1
imagesize: 1.4.1
ipykernel: 6.29.2
ipython: 8.21.0
ipywidgets: 8.1.3
jedi: 0.19.1
jinja2: 3.1.4
jupyter-client: 8.6.0
jupyter-core: 5.7.2
jupyterlab-widgets: 3.0.11
kiwisolver: 1.4.5
line-profiler: 4.1.2
lxml: 5.2.1
lz4: 4.3.3
MarkupSafe: 2.1.5
matplotlib: 3.8.4
matplotlib-inline: 0.1.7
msgpack: 1.0.8
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.0
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.3.0
pip: 24.0
pkginfo: 1.10.0
platformdirs: 4.2.2
prompt-toolkit: 3.0.47
psutil: 5.9.8
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pygments: 2.17.2
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.1.2
pyproject-hooks: 1.1.0
PyQt6-commercial: 6.6.1
PyQt6-Qt6: 6.6.3
PyQt6-sip: 13.6.0
PyQt6-WebEngine-commercial: 6.6.0
PyQt6-WebEngine-Qt6: 6.6.3
python-dateutil: 2.9.0.post0
pytz: 2024.1
pyzmq: 26.0.3
qtconsole: 5.5.1
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scipy: 1.13.0
setuptools: 69.5.1
setuptools-scm: 8.0.4
sfftk-rw: 0.8.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 7.2.6
sphinx-autodoc-typehints: 2.0.1
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2024.1.30
tinyarray: 1.2.4
tornado: 6.4.1
traitlets: 5.14.2
typing-extensions: 4.12.2
tzdata: 2024.1
urllib3: 2.2.1
wcwidth: 0.2.13
webcolors: 1.13
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.11
Note:
See TracTickets
for help on using tickets.
