id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 16925 Crash in python_instances_of_class chimerax-bug-report@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: macOS-13.4-arm64-arm-64bit ChimeraX Version: 1.8.dev202403290055 (2024-03-29 00:55:10 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Segmentation fault Current thread 0x00000001f4a79e00 (most recent call first): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/molobject.py"", line 44 in python_instances_of_class File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/structure.py"", line 2636 in File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/attributes.py"", line 256 in File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/attributes.py"", line 256 in include_state File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/session.py"", line 260 in discovery File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/session.py"", line 641 in save File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/session.py"", line 917 in save File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core_formats/__init__.py"", line 95 in save File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/save_command/cmd.py"", line 101 in provider_save File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/cli.py"", line 2904 in run File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/save_command/cmd.py"", line 86 in cmd_save File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/cli.py"", line 2904 in run File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/run.py"", line 49 in run File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/save_command/dialog.py"", line 62 in display File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/save_command/dialog.py"", line 138 in show_save_file_dialog File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/toolbar/providers.py"", line 38 in _file_save File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/toolbar/providers.py"", line 56 in run_provider File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/toolbar/__init__.py"", line 37 in run_provider File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/toolshed/__init__.py"", line 1302 in run_provider File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/toolshed/info.py"", line 397 in run_provider File 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\nSTACK GUARD 848K 53 \nStack 163.4M 54 \nStack Guard 56.0M 1 \nVM_ALLOCATE 364.5M 505 \nVM_ALLOCATE (reserved) 224.0M 1 reserved VM address space (unallocated)\n__AUTH 1877K 379 \n__AUTH_CONST 29.2M 614 \n__CTF 824 1 \n__DATA 20.7M 765 \n__DATA_CONST 39.9M 769 \n__DATA_DIRTY 2021K 238 \n__FONT_DATA 2352 1 \n__GLSLBUILTINS 5174K 1 \n__INFO_FILTER 8 1 \n__LINKEDIT 831.9M 154 \n__OBJC_RO 66.3M 1 \n__OBJC_RW 2011K 1 \n__TEXT 876.5M 789 \ndyld private memory 320K 4 \nmapped file 555.2M 92 \nshared memory 3232K 31 \n=========== ======= ======= \nTOTAL 3.9G 5102 \nTOTAL, minus reserved VM space 3.7G 5102 \n"", ""legacyInfo"" : { ""threadTriggered"" : { ""name"" : ""CrBrowserMain"", ""queue"" : ""com.apple.main-thread"" } }, ""logWritingSignature"" : ""c8a99de242ad59a5cdafdd423c4bde37abf4c857"", ""trialInfo"" : { ""rollouts"" : [ { ""rolloutId"" : ""63582c5f8a53461413999550"", ""factorPackIds"" : { }, ""deploymentId"" : 240000002 }, { ""rolloutId"" : ""62fe74515312cd4599bd3c80"", ""factorPackIds"" : { ""MYRIAD_BOOSTS"" : ""62fe74805312cd4599bd3c81"" }, ""deploymentId"" : 240000006 } ], ""experiments"" : [ ] } } ===== Log before crash start ===== UCSF ChimeraX version: 1.8.dev202403290055 (2024-03-29) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Users/apple/Downloads/6mqt.pdb 6mqt.pdb title: Hras G12S In complex with GDP [more info...] Chain information for 6mqt.pdb #1 --- Chain | Description | UniProt A B C D E F G H | gtpase hras | RASH_HUMAN 1-166 Non-standard residues in 6mqt.pdb #1 --- GDP — guanosine-5'-diphosphate MG — magnesium ion 997 atoms have alternate locations. Control/examine alternate locations with Altloc Explorer [start tool...] or the altlocs command. > select add #1 22372 atoms, 21505 bonds, 48 pseudobonds, 2375 residues, 2 models selected > show sel cartoons > hide sel atoms > select clear > ui tool show ""Show Sequence Viewer"" > sequence chain /A /B /C /D /E /F /G /H Alignment identifier is 1 > select /A-H:30-31 216 atoms, 208 bonds, 16 residues, 1 model selected > select /A-H:30-40 1328 atoms, 1344 bonds, 88 residues, 1 model selected > color sel magenta > select /A-H:60 56 atoms, 48 bonds, 8 residues, 1 model selected > select /A-H:60-76 2112 atoms, 2120 bonds, 136 residues, 1 model selected > color sel lime > close #1 > open /Users/apple/Downloads/2quz.pdb 2quz.pdb title: Crystal structure of the activating H-RASK117R mutant In costello syndrome, bound to Mg-GDP [more info...] Chain information for 2quz.pdb #1 --- Chain | Description | UniProt A | C-H-RAS P21 protein; transforming protein P21; P21RAS; H- RAS-1; C-H-RAS; HA-RAS | RASH_HUMAN 1-166 Non-standard residues in 2quz.pdb #1 --- GDP — guanosine-5'-diphosphate MG — magnesium ion Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(NoModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ShiftModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ControlModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ShiftModifier|ControlModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(AltModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ShiftModifier|AltModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ControlModifier|AltModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ShiftModifier|ControlModifier|AltModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ShiftModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ControlModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ShiftModifier|ControlModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(AltModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ShiftModifier|AltModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ControlModifier|AltModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier) > crystalcontacts #1 5 pairs of asymmetric units of 2quz.pdb contact at distance 3.0 A Atoms MTRIX SMTRY Unit cell MTRIXref Copies 28 0 16 0 0 0 0 1 11 0 1 0 0 0 0 1 8 0 11 0 0 0 0 1 8 0 9 -1 0 0 0 1 7 0 2 0 0 0 0 1 > ui tool show ""Show Sequence Viewer"" > sequence chain #1/A Alignment identifier is 1/A > select #1/A:30-31 17 atoms, 16 bonds, 2 residues, 1 model selected > select #1/A:30-40 94 atoms, 96 bonds, 11 residues, 1 model selected > color sel magenta > select #1/A:60 4 atoms, 3 bonds, 1 residue, 1 model selected > select #1/A:60-76 141 atoms, 142 bonds, 17 residues, 1 model selected > color sel lime > close #1-2 > open /Users/apple/Downloads/7jii.pdb 7jii.pdb title: Hras A59E GDP [more info...] Chain information for 7jii.pdb #1 --- Chain | Description | UniProt A B | gtpase hras | RASH_HUMAN 1-166 Non-standard residues in 7jii.pdb #1 --- CA — calcium ion GDP — guanosine-5'-diphosphate MG — magnesium ion 34 atoms have alternate locations. Control/examine alternate locations with Altloc Explorer [start tool...] or the altlocs command. > ui tool show ""Show Sequence Viewer"" > sequence chain /A Alignment identifier is 1/A > select /A:30-31 17 atoms, 16 bonds, 2 residues, 1 model selected > select /A:30-40 85 atoms, 87 bonds, 11 residues, 1 model selected > color sel magenta > select /A:60-61 13 atoms, 12 bonds, 2 residues, 1 model selected > select /A:60-76 137 atoms, 138 bonds, 17 residues, 1 model selected > color sel lime > select clear > crystalcontacts #1 12 pairs of asymmetric units of 7jii.pdb contact at distance 3.0 A Atoms MTRIX SMTRY Unit cell MTRIXref Copies 18 0 0 -1 0 0 0 1 17 0 0 0 -1 0 0 1 16 0 0 1 0 0 0 1 14 0 0 0 1 0 0 1 10 0 0 -1 -1 -1 0 1 9 0 0 1 1 1 0 1 9 0 0 1 0 1 0 1 8 0 0 -1 0 -1 0 1 4 0 0 0 1 1 0 1 4 0 0 0 0 1 0 1 4 0 0 0 -1 -1 0 1 3 0 0 0 0 -1 0 1 > ui tool show ""Show Sequence Viewer"" > sequence chain #1/B Alignment identifier is 1/B > select #1/B:30 8 atoms, 7 bonds, 1 residue, 1 model selected > select #1/B:30-40 94 atoms, 96 bonds, 11 residues, 1 model selected > color sel magenta > select #1/B:60 4 atoms, 3 bonds, 1 residue, 1 model selected > select #1/B:60-76 124 atoms, 124 bonds, 17 residues, 1 model selected > color sel lime > select add #1 3005 atoms, 2704 bonds, 29 pseudobonds, 676 residues, 2 models selected > show sel surfaces > select #1/A:30 8 atoms, 7 bonds, 1 residue, 1 model selected > select #1/A:30-40 85 atoms, 87 bonds, 11 residues, 1 model selected > select #1/A:30-40,60-76 222 atoms, 225 bonds, 28 residues, 1 model selected > select #1/B:30-40,60-76 218 atoms, 220 bonds, 28 residues, 1 model selected > select #1/B:30-40,60-76 218 atoms, 220 bonds, 28 residues, 1 model selected > select #1/B:30 8 atoms, 7 bonds, 1 residue, 1 model selected > select #1/B:30-40 94 atoms, 96 bonds, 11 residues, 1 model selected > select #1/A:30-40,60-76 222 atoms, 225 bonds, 28 residues, 1 model selected > select #1/A:40 12 atoms, 12 bonds, 1 residue, 1 model selected > select #1/A:30-40 85 atoms, 87 bonds, 11 residues, 1 model selected > select #1/B:30-40 94 atoms, 96 bonds, 11 residues, 1 model selected > color (#!1 & sel) magenta > select #1/A:30 8 atoms, 7 bonds, 1 residue, 1 model selected > select #1/A:30-40 85 atoms, 87 bonds, 11 residues, 1 model selected > color (#!1 & sel) magenta > select #1/A:60 4 atoms, 3 bonds, 1 residue, 1 model selected > select #1/A:60-76 137 atoms, 138 bonds, 17 residues, 1 model selected > color (#!1 & sel) lime > select #1/B:60 4 atoms, 3 bonds, 1 residue, 1 model selected > select #1/B:60-76 124 atoms, 124 bonds, 17 residues, 1 model selected > color (#!1 & sel) lime > select clear > select add #1 3005 atoms, 2704 bonds, 29 pseudobonds, 676 residues, 2 models selected > select add #2 39065 atoms, 35152 bonds, 377 pseudobonds, 8788 residues, 29 models selected > hide sel atoms > select clear > select add #1 3005 atoms, 2704 bonds, 29 pseudobonds, 676 residues, 2 models selected > color (#!1 & sel) dark gray > select #1/A:30 8 atoms, 7 bonds, 1 residue, 1 model selected > select #1/A:30-40 85 atoms, 87 bonds, 11 residues, 1 model selected > color (#!1 & sel) magenta > select #1/A:60-61 13 atoms, 12 bonds, 2 residues, 1 model selected > select #1/A:60-76 137 atoms, 138 bonds, 17 residues, 1 model selected > color (#!1 & sel) lime > select #1/B:30 8 atoms, 7 bonds, 1 residue, 1 model selected > select #1/B:30-40 94 atoms, 96 bonds, 11 residues, 1 model selected > color (#!1 & sel) magenta > select #1/B:60 4 atoms, 3 bonds, 1 residue, 1 model selected > select #1/B:60-76 124 atoms, 124 bonds, 17 residues, 1 model selected > color (#!1 & sel) lime > select #1/B:30-40,60-76 218 atoms, 220 bonds, 28 residues, 1 model selected > select sel @ select add #1 3132 atoms, 2786 bonds, 34 pseudobonds, 724 residues, 9 models selected > select subtract #1 127 atoms, 82 bonds, 5 pseudobonds, 48 residues, 8 models selected > show sel atoms > hide sel cartoons > show sel atoms > hide sel cartoons > select #1/A:30 8 atoms, 7 bonds, 1 residue, 1 model selected > select #1/A:30-40 85 atoms, 87 bonds, 11 residues, 1 model selected > select clear > select #1/A:30 8 atoms, 7 bonds, 1 residue, 1 model selected > select #1/A:30-40 85 atoms, 87 bonds, 11 residues, 1 model selected > select #1/A:30-40,60-76 222 atoms, 225 bonds, 28 residues, 1 model selected > select sel @ select add #1 3128 atoms, 2780 bonds, 31 pseudobonds, 727 residues, 10 models selected > select subtract #1 123 atoms, 76 bonds, 2 pseudobonds, 51 residues, 9 models selected > show sel atoms > hide sel cartoons > select add #2 36060 atoms, 32448 bonds, 348 pseudobonds, 8112 residues, 25 models selected > hide sel cartoons > select clear > select ::name=""HOH"" 4368 atoms, 4368 residues, 13 models selected > hide sel atoms > select #1/A:30 8 atoms, 7 bonds, 1 residue, 1 model selected > select #1/A:30-40 85 atoms, 87 bonds, 11 residues, 1 model selected > select #1/A:30-40,60-76 222 atoms, 225 bonds, 28 residues, 1 model selected > select sel : select sel : select add #1 3845 atoms, 3452 bonds, 34 pseudobonds, 832 residues, 10 models selected > select subtract #1 840 atoms, 748 bonds, 5 pseudobonds, 156 residues, 9 models selected > show sel atoms > hide sel cartoons > select clear > select add #1 3005 atoms, 2704 bonds, 29 pseudobonds, 676 residues, 2 models selected > hide sel surfaces > show sel surfaces > hide sel surfaces > select #1/A:31 9 atoms, 8 bonds, 1 residue, 1 model selected > show sel atoms > ui mousemode right distance > distance #2.1/A:41@NH2 #1/A:31@OE1 Distance between 7jii.pdb -1 0 0 #2.1/A ARG 41 NH2 and 7jii.pdb #1/A GLU 31 OE1: 9.952Å > ~distance #2.1/A:41@NH2 #1/A:31@OE1 > select clear > select #1/A:30-31 17 atoms, 16 bonds, 2 residues, 1 model selected > select #1/A:30-40 85 atoms, 87 bonds, 11 residues, 1 model selected > select #1/A:30-40,60-76 222 atoms, 225 bonds, 28 residues, 1 model selected > select sel : show sel atoms > hide sel cartoons > show sel atoms > hide sel cartoons > hide sel atoms > select add #1 3228 atoms, 2890 bonds, 32 pseudobonds, 727 residues, 10 models selected > select subtract #1 223 atoms, 186 bonds, 3 pseudobonds, 51 residues, 9 models selected > show sel atoms > undo Mismatch between Cocoa '\x0' and Carbon 'z' for virtual key 6 with QFlags(NoModifier) Mismatch between Cocoa '\x0' and Carbon 'Z' for virtual key 6 with QFlags(ShiftModifier) Mismatch between Cocoa '\x0' and Carbon 'z' for virtual key 6 with QFlags(ControlModifier) Mismatch between Cocoa '\x0' and Carbon 'Z' for virtual key 6 with QFlags(ShiftModifier|ControlModifier) Mismatch between Cocoa '\x0' and Carbon '\u03a9' for virtual key 6 with QFlags(AltModifier) Mismatch between Cocoa '\x0' and Carbon '\u00b8' for virtual key 6 with QFlags(ShiftModifier|AltModifier) Mismatch between Cocoa '\x0' and Carbon '\u03a9' for virtual key 6 with QFlags(ControlModifier|AltModifier) Mismatch between Cocoa '\x0' and Carbon '\u00b8' for virtual key 6 with QFlags(ShiftModifier|ControlModifier|AltModifier) Mismatch between Cocoa '\x0' and Carbon '\x1a' for virtual key 6 with QFlags(MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x1a' for virtual key 6 with QFlags(ShiftModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x1a' for virtual key 6 with QFlags(ControlModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x1a' for virtual key 6 with QFlags(ShiftModifier|ControlModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x1a' for virtual key 6 with QFlags(AltModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x1a' for virtual key 6 with QFlags(ShiftModifier|AltModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x1a' for virtual key 6 with QFlags(ControlModifier|AltModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x1a' for virtual key 6 with QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier) > select clear > select ::name=""HOH"" 4368 atoms, 4368 residues, 13 models selected > select clear > select ::name=""HOH"" 4368 atoms, 4368 residues, 13 models selected > delete atoms sel > delete bonds sel > select clear > select #1/A:30 8 atoms, 7 bonds, 1 residue, 1 model selected > select #1/A:30-40 85 atoms, 87 bonds, 11 residues, 1 model selected > select #1/A:30-40,60-76 222 atoms, 225 bonds, 28 residues, 1 model selected > select clear > select add #2 32028 atoms, 32448 bonds, 120 pseudobonds, 4080 residues, 25 models selected > hide sel atoms > select clear > select #1/A:30-31 17 atoms, 16 bonds, 2 residues, 1 model selected > select #1/A:30-40 85 atoms, 87 bonds, 11 residues, 1 model selected > select #1/A:30-40,60-76 222 atoms, 225 bonds, 28 residues, 1 model selected > select sel : select add #1 2865 atoms, 2890 bonds, 13 pseudobonds, 364 residues, 10 models selected > select subtract #1 196 atoms, 186 bonds, 3 pseudobonds, 24 residues, 9 models selected > show sel atoms > select clear > select ::name=""CA""::name=""GDP""::name=""MG"" 806 atoms, 780 bonds, 26 pseudobonds, 104 residues, 26 models selected > delete atoms (#!1#!2.1-12 & sel) > delete bonds (#!1#!2.1-12 & sel) > select clear > select add #2 31284 atoms, 31728 bonds, 3984 residues, 13 models selected > color sel blue > select clear > select #1/B:30 8 atoms, 7 bonds, 1 residue, 1 model selected > select #1/B:30-40 94 atoms, 96 bonds, 11 residues, 1 model selected > select #1/B:30-40,60-76 218 atoms, 220 bonds, 28 residues, 1 model selected > select sel : select add #1 2845 atoms, 2874 bonds, 359 residues, 7 models selected > select subtract #1 238 atoms, 230 bonds, 27 residues, 7 models selected > show sel atoms > select clear > select add #1 2607 atoms, 2644 bonds, 332 residues, 1 model selected > show sel surfaces > select clear > set bgColor white > save ""/Users/apple/Documents/NYU_Langone/Koide_Lab/For RAS > grant/crystal_contacts2/7jii_P1.cxs"" ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.8.dev202403290055 (2024-03-29) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 83.1 OpenGL renderer: Apple M2 Max OpenGL vendor: Apple Python: 3.11.4 Locale: UTF-8 Qt version: PyQt6 6.6.1, Qt 6.6.1 Qt runtime version: 6.6.2 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: Mac14,6 Model Number: MNWA3LL/A Chip: Apple M2 Max Total Number of Cores: 12 (8 performance and 4 efficiency) Memory: 32 GB System Firmware Version: 8422.121.1 OS Loader Version: 8422.121.1 Software: System Software Overview: System Version: macOS 13.4 (22F66) Kernel Version: Darwin 22.5.0 Time since boot: 9 days, 19 hours, 28 minutes Graphics/Displays: Apple M2 Max: Chipset Model: Apple M2 Max Type: GPU Bus: Built-In Total Number of Cores: 38 Vendor: Apple (0x106b) Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-in Liquid Retina XDR Display Resolution: 3456 x 2234 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal DELL U2413: Resolution: 1200 x 1920 UI Looks like: 1200 x 1920 @ 60.00Hz Mirror: Off Online: Yes Rotation: 90 Installed Packages: alabaster: 0.7.16 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 2.4.1 Babel: 2.14.0 beautifulsoup4: 4.12.3 blockdiag: 3.0.0 blosc2: 2.0.0 build: 1.1.1 certifi: 2023.11.17 cftime: 1.6.3 charset-normalizer: 3.3.2 ChimeraX-AddCharge: 1.5.16 ChimeraX-AddH: 2.2.5 ChimeraX-AlignmentAlgorithms: 2.0.1 ChimeraX-AlignmentHdrs: 3.4.3 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.12.5 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.1.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.56 ChimeraX-AtomicLibrary: 14.0.3 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.12.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.4 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.5 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.8.dev202403290055 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.3 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.3 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-Label: 1.1.9 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.1.6 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.1.4 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.1.3 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.7 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.14 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.15 ChimeraX-ModelPanel: 1.5 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.1 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.1 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.13.3 ChimeraX-PDB: 2.7.5 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.3 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.2 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.2 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.11.2 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.16.3 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.37.1 ChimeraX-uniprot: 2.3 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.3.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.3 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.2 contourpy: 1.2.0 cxservices: 1.2.2 cycler: 0.12.1 Cython: 3.0.9 debugpy: 1.8.1 decorator: 5.1.1 docutils: 0.20.1 executing: 2.0.1 filelock: 3.13.1 fonttools: 4.50.0 funcparserlib: 2.0.0a0 glfw: 2.7.0 grako: 3.16.5 h5py: 3.10.0 html2text: 2024.2.26 idna: 3.6 ihm: 0.43 imagecodecs: 2024.1.1 imagesize: 1.4.1 ipykernel: 6.29.2 ipython: 8.21.0 ipywidgets: 8.1.2 jedi: 0.19.1 Jinja2: 3.1.3 jupyter-client: 8.6.0 jupyter-core: 5.7.2 jupyterlab-widgets: 3.0.10 kiwisolver: 1.4.5 line-profiler: 4.1.2 lxml: 5.1.0 lz4: 4.3.3 MarkupSafe: 2.1.5 matplotlib: 3.8.3 matplotlib-inline: 0.1.6 msgpack: 1.0.8 ndindex: 1.8 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.2.1 nibabel: 5.0.1 nptyping: 2.5.0 numexpr: 2.9.0 numpy: 1.26.4 openvr: 1.26.701 packaging: 23.2 ParmEd: 4.2.2 parso: 0.8.3 pep517: 0.13.1 pexpect: 4.9.0 pillow: 10.2.0 pip: 24.0 pkginfo: 1.10.0 platformdirs: 4.2.0 prompt-toolkit: 3.0.43 psutil: 5.9.8 ptyprocess: 0.7.0 pure-eval: 0.2.2 py-cpuinfo: 9.0.0 pycollada: 0.8 pydicom: 2.3.0 pygments: 2.17.2 pynmrstar: 3.3.4 pynrrd: 1.0.0 PyOpenGL: 3.1.7 PyOpenGL-accelerate: 3.1.7 pyopenxr: 1.0.3302 pyparsing: 3.1.2 pyproject-hooks: 1.0.0 PyQt6-commercial: 6.6.1 PyQt6-Qt6: 6.6.2 PyQt6-sip: 13.6.0 PyQt6-WebEngine-commercial: 6.6.0 PyQt6-WebEngine-Qt6: 6.6.2 python-dateutil: 2.9.0.post0 pytz: 2024.1 pyzmq: 25.1.2 qtconsole: 5.5.1 QtPy: 2.4.1 RandomWords: 0.4.0 requests: 2.31.0 scipy: 1.12.0 setuptools: 69.2.0 setuptools-scm: 8.0.4 sfftk-rw: 0.8.1 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.5 sphinx: 7.2.6 sphinx-autodoc-typehints: 2.0.0 sphinxcontrib-applehelp: 1.0.8 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.6 sphinxcontrib-htmlhelp: 2.0.5 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.7 sphinxcontrib-serializinghtml: 1.1.10 stack-data: 0.6.3 superqt: 0.6.1 tables: 3.8.0 tcia-utils: 1.5.1 tifffile: 2024.1.30 tinyarray: 1.2.4 tornado: 6.4 traitlets: 5.14.1 typing-extensions: 4.10.0 tzdata: 2024.1 urllib3: 2.2.1 wcwidth: 0.2.13 webcolors: 1.13 wheel: 0.43.0 wheel-filename: 1.4.1 widgetsnbextension: 4.0.10 }}} " defect closed normal Core duplicate all ChimeraX