id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
16995	Crash in timer execution while modal dialog shown	chimerax-bug-report@…	Eric Pettersen	"{{{
The following bug report has been submitted:
Platform:        macOS-15.0-x86_64-i386-64bit
ChimeraX Version: 1.9 (2024-12-11 19:11:19 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
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  ""vmSummary"" : ""ReadOnly portion of Libraries: Total=1.9G resident=0K(0%) swapped_out_or_unallocated=1.9G(100%)\nWritable regions: Total=4.3G written=2265K(0%) resident=2265K(0%) swapped_out=0K(0%) unallocated=4.3G(100%)\n\n                                VIRTUAL   REGION \nREGION TYPE                        SIZE    COUNT (non-coalesced) \n===========                     =======  ======= \nAccelerate framework               128K        1 \nActivity Tracing                   256K        1 \nCG image                           976K       31 \nCG raster data                     432K        9 \nColorSync                          624K       31 \nCoreAnimation                     1328K       69 \nCoreGraphics                        96K        6 \nCoreServices                       624K        2 \nCoreUI image data                 5088K       37 \nFoundation                          16K        1 \nKernel Alloc Once                   32K        1 \nMALLOC                             3.0G      129 \nMALLOC guard page                  288K       18 \nMALLOC_LARGE (reserved)             16K        1         reserved VM address space (unallocated)\nMach message                        96K        4 \nOpenGL GLSL                        384K        4 \nSTACK GUARD                       56.8M       51 \nStack                            260.7M       51 \nVM_ALLOCATE                      409.3M      317 \nVM_ALLOCATE (reserved)           512.0M        3         reserved VM address space (unallocated)\n__AUTH                            4914K      649 \n__AUTH_CONST                      68.7M      897 \n__CTF                               824        1 \n__DATA                            34.3M     1139 \n__DATA_CONST                      35.5M     1146 \n__DATA_DIRTY                      2761K      339 \n__FONT_DATA                        2352        1 \n__GLSLBUILTINS                    5174K        1 \n__INFO_FILTER                         8        1 \n__LINKEDIT                       628.5M      246 \n__OBJC_RW                         2353K        1 \n__TEXT                             1.3G     1165 \n__TPRO_CONST                       272K        2 \ndyld private memory                336K        3 \nmapped file                      281.9M       76 \nowned unmapped memory            149.3M        1 \npage table in kernel              2265K        1 \nshared memory                     3680K       24 \n===========                     =======  ======= \nTOTAL                              6.7G     6460 \nTOTAL, minus reserved VM space     6.2G     6460 \n"",
  ""legacyInfo"" : {
  ""threadTriggered"" : {

  }
},
  ""logWritingSignature"" : ""6ddff1699b75e39da6bd260ca81b4417c98c9a5d"",
  ""trialInfo"" : {
  ""rollouts"" : [
    {
      ""rolloutId"" : ""6410af69ed1e1e7ab93ed169"",
      ""factorPackIds"" : {

      },
      ""deploymentId"" : 240000011
    },
    {
      ""rolloutId"" : ""5ffde50ce2aacd000d47a95f"",
      ""factorPackIds"" : {

      },
      ""deploymentId"" : 240000457
    }
  ],
  ""experiments"" : [
    {
      ""treatmentId"" : ""f18344bb-554f-48ae-8449-e108a8813a55"",
      ""experimentId"" : ""6685b5584477001000e8c6c9"",
      ""deploymentId"" : 400000005
    }
  ]
}
}
===== Log before crash start =====
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 1.8 (2024-06-10)  
© 2016-2024 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open /Users/reyesruizcampoy/Desktop/PhD/CryoEM/Yewei_map/Final/gC1QR-
> HMWK/cryosparc/C2-3.42A/Fitting_C2_yewei.cxs format session

Opened c2-nonuniform-refinement.mrc as #1, grid size 256,256,256, pixel 0.835,
shown at level 0.072, step 1, values float32  
Opened c2-nonuniform-refinement.mrc gaussian as #3, grid size 256,256,256,
pixel 0.835, shown at level 0.103, step 1, values float32  
Opened c2-nonuniform-refinement.mrc gaussian z flip as #4, grid size
256,256,256, pixel 0.835, shown at level 0.103, step 1, values float32  
Opened c2-nonuniform-refinement.mrc z flip as #5, grid size 256,256,256, pixel
0.835, shown at level 0.152, step 1, values float32  
opened ChimeraX session  

> open /Users/reyesruizcampoy/Desktop/PhD/CryoEM/Yewei_map/Final/gC1QR-
> HMWK/cryosparc/C2-3.42A/C2-HALF-A.mrc
> /Users/reyesruizcampoy/Desktop/PhD/CryoEM/Yewei_map/Final/gC1QR-
> HMWK/cryosparc/C2-3.42A/C2-HALF-B.mrc

Opened C2-HALF-A.mrc as #6.1, grid size 256,256,256, pixel 0.835, shown at
level 0.0678, step 1, values float32  
Opened C2-HALF-B.mrc as #6.2, grid size 256,256,256, pixel 0.835, shown at
level 0.068, step 1, values float32  

> volume flip #6.1 axis z

Opened C2-HALF-A.mrc z flip as #7, grid size 256,256,256, pixel 0.835, shown
at step 1, values float32  

> volume flip #6.2 axis z

Opened C2-HALF-B.mrc z flip as #8, grid size 256,256,256, pixel 0.835, shown
at step 1, values float32  

> surface dust #5 size 8.35

> surface dust #7 size 8.35

> surface dust #8 size 8.35

> save /Users/reyesruizcampoy/Desktop/PhD/CryoEM/Yewei_map/Final/gC1QR-
> HMWK/cryosparc/C2-3.42A/half_map1_vozflip.mrc models #7

> save /Users/reyesruizcampoy/Desktop/PhD/CryoEM/Yewei_map/Final/gC1QR-
> HMWK/cryosparc/C2-3.42A/half_map2_vozflip.mrc models #8

> close session

> open /Users/reyesruizcampoy/Desktop/PhD/CryoEM/Yewei_map/Final/gC1QR-
> HMWK/cryosparc/C2-3.42A/half_map2_vozflip.mrc
> /Users/reyesruizcampoy/Desktop/PhD/CryoEM/Yewei_map/Final/gC1QR-
> HMWK/cryosparc/C2-3.42A/half_map1_vozflip.mrc

Opened half_map2_vozflip.mrc as #1.1, grid size 256,256,256, pixel 0.835,
shown at level 0.068, step 1, values float32  
Opened half_map1_vozflip.mrc as #1.2, grid size 256,256,256, pixel 0.835,
shown at level 0.0678, step 1, values float32  

> surface dust #1.1 size 8.35

> surface dust #1.2 size 8.35

> close session

> open /Users/reyesruizcampoy/Desktop/PhD/CryoEM/Yewei_map/Final/gC1QR-
> HMWK/cryosparc/C2-3.42A/Fitting_C2_yewei.cxs format session

Opened c2-nonuniform-refinement.mrc as #1, grid size 256,256,256, pixel 0.835,
shown at level 0.072, step 1, values float32  
Opened c2-nonuniform-refinement.mrc gaussian as #3, grid size 256,256,256,
pixel 0.835, shown at level 0.103, step 1, values float32  
Opened c2-nonuniform-refinement.mrc gaussian z flip as #4, grid size
256,256,256, pixel 0.835, shown at level 0.103, step 1, values float32  
Opened c2-nonuniform-refinement.mrc z flip as #5, grid size 256,256,256, pixel
0.835, shown at level 0.152, step 1, values float32  
opened ChimeraX session  

> save /Users/reyesruizcampoy/Desktop/PhD/CryoEM/Yewei_map/Final/gC1QR-
> HMWK/cryosparc/C2-3.42A/c2-nonuniform-refinement_vozflip.mrc models #5

> ui tool show ""Fit in Map""

> fitmap #2 inMap #5

Fit molecule 1p32 (#2) to map c2-nonuniform-refinement_vozflip.mrc (#5) using
4663 atoms  
average map value = 0.1445, steps = 48  
shifted from previous position = 0.00417  
rotated from previous position = 0.00969 degrees  
atoms outside contour = 2612, contour level = 0.15161  
  
Position of 1p32 (#2) relative to c2-nonuniform-refinement_vozflip.mrc (#5)
coordinates:  
Matrix rotation and translation  
0.35948466 0.89332747 0.26969762 91.58176191  
-0.87651641 0.42241124 -0.23084135 146.15868553  
-0.32014022 -0.15341046 0.93486655 96.06822694  
Axis 0.04147008 0.31590265 -0.94788488  
Axis point 170.03443647 17.48946871 0.00000000  
Rotation angle (degrees) 68.99918531  
Shift along axis -41.09180084  
  

> save /Users/reyesruizcampoy/Desktop/PhD/CryoEM/Yewei_map/Final/gC1QR-
> HMWK/cryosparc/C2-3.42A/1P32_fitting_1_3_25.pdb selectedOnly true

> open /Users/reyesruizcampoy/Desktop/PhD/CryoEM/Yewei_map/Final/gC1QR-
> HMWK/cryosparc/ResolveCryoEM_2/denmod_map.ccp4

Opened denmod_map.ccp4 as #6, grid size 86,132,137, pixel 0.835, shown at
level 1.32, step 1, values float32  

> hide #!5 models

> color #6 #6d6dfeff models

> color #6 #5858cdff models

> color #6 #4169cdff models

> color #6 #3e65c5ff models

> close #1

> volume #6 level 0.3813

> surface dust #6 size 8.35

> volume #6 style mesh

> fitmap #2 inMap #6

Fit molecule 1p32 (#2) to map denmod_map.ccp4 (#6) using 4663 atoms  
average map value = 0.8958, steps = 44  
shifted from previous position = 0.0294  
rotated from previous position = 0.0281 degrees  
atoms outside contour = 1854, contour level = 0.38135  
  
Position of 1p32 (#2) relative to denmod_map.ccp4 (#6) coordinates:  
Matrix rotation and translation  
0.35950412 0.89337567 0.26951197 91.56373427  
-0.87667752 0.42230073 -0.23043137 146.13712374  
-0.31967688 -0.15343406 0.93502122 96.03853981  
Axis 0.04123840 0.31555920 -0.94800938  
Axis point 169.98900418 17.48018671 0.00000000  
Rotation angle (degrees) 68.99723316  
Shift along axis -41.15458092  
  

> fitmap #2 inMap #6

Fit molecule 1p32 (#2) to map denmod_map.ccp4 (#6) using 4663 atoms  
average map value = 0.8958, steps = 48  
shifted from previous position = 0.0157  
rotated from previous position = 0.0257 degrees  
atoms outside contour = 1849, contour level = 0.38135  
  
Position of 1p32 (#2) relative to denmod_map.ccp4 (#6) coordinates:  
Matrix rotation and translation  
0.35949406 0.89337749 0.26951934 91.57397091  
-0.87682351 0.42222488 -0.23001453 146.12257181  
-0.31928758 -0.15363204 0.93512173 96.02759127  
Axis 0.04090924 0.31535558 -0.94809139  
Axis point 169.96479434 17.46559326 0.00000000  
Rotation angle (degrees) 68.99678491  
Shift along axis -41.21614199  
  

> volume #6 level 0.2099

> volume #6 level 0.1476

> open /Users/reyesruizcampoy/Desktop/PhD/CryoEM/Yewei_map/Final/gC1QR-
> HMWK/cryosparc/ResolveCryoEM_2/denmod_resolution_map.ccp4

Opened denmod_resolution_map.ccp4 as #1, grid size 86,132,137, pixel 0.835,
shown at level 10.4, step 1, values float32  

> volume #1 level 6.752

> volume #1 level 6.465


===== Log before crash end =====

Log:
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  

> remotecontrol rest start port 49909

UCSF ChimeraX version: 1.9 (2024-12-11)  
© 2016-2024 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  
REST server started on host 127.0.0.1 port 49909  
Visit http://127.0.0.1:49909/cmdline.html for CLI interface  




OpenGL version: 4.1 Metal - 89.3
OpenGL renderer: Apple M1 Max
OpenGL vendor: Apple

Python: 3.11.4
Locale: en_US.UTF-8
Qt version: PyQt6 6.7.1, Qt 6.7.1
Qt runtime version: 6.7.3
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: MacBookPro18,2
      Model Number: Z14V000GEB/A
      Chip: Unknown
      Total Number of Cores: 10 (8 performance and 2 efficiency)
      Memory: 32 GB
      System Firmware Version: 11881.1.1
      OS Loader Version: 11881.1.1

Software:

    System Software Overview:

      System Version: macOS 15.0 (24A335)
      Kernel Version: Darwin 24.0.0
      Time since boot: 10 days, 12 hours, 13 minutes

Graphics/Displays:

    Apple M1 Max:

      Chipset Model: Apple M1 Max
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 24
      Vendor: Apple (0x106b)
      Metal Support: Metal 3
      Displays:
        Color LCD:
          Display Type: Built-in Liquid Retina XDR Display
          Resolution: 3456 x 2234 Retina
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes
          Connection Type: Internal


Installed Packages:
    alabaster: 1.0.0
    anyio: 4.7.0
    appdirs: 1.4.4
    appnope: 0.1.4
    asttokens: 3.0.0
    auditwheel: 6.1.0
    autocommand: 2.2.2
    babel: 2.16.0
    backports.tarfile: 1.2.0
    beautifulsoup4: 4.12.3
    blockdiag: 3.0.0
    blosc2: 3.0.0
    build: 1.2.1
    certifi: 2023.11.17
    cftime: 1.6.4.post1
    charset-normalizer: 3.4.0
    ChimeraX-AddCharge: 1.5.18
    ChimeraX-AddH: 2.2.6
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.5
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.16.1
    ChimeraX-AlphaFold: 1.0.1
    ChimeraX-AltlocExplorer: 1.1.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.58.8
    ChimeraX-AtomicLibrary: 14.1.11
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 3.0.0
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.13.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.4.0
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.4
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.3
    ChimeraX-Clipper: 0.24.0
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.6
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.9
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.4
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2.6
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.3
    ChimeraX-Dssp: 2.0
    ChimeraX-EMalign: 0.1.3
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.4.1
    ChimeraX-Hbonds: 2.5
    ChimeraX-Help: 1.3
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.3
    ChimeraX-ISOLDE: 1.9
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-KVFinder: 1.2.1
    ChimeraX-Label: 1.1.14
    ChimeraX-LigandRecognizer: 0.2
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.2
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.3
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.6
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.7.2
    ChimeraX-MedicalToolbar: 1.1
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.14.2
    ChimeraX-MMTF: 2.2
    ChimeraX-ModelArchive: 1.0
    ChimeraX-Modeller: 1.5.18
    ChimeraX-ModelPanel: 1.5
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-MutationScores: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.14
    ChimeraX-OrthoPick: 1.0.1
    ChimeraX-PDB: 2.7.6
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PhenixUI: 1.3.7
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.2
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.6.2
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.3.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.5.6
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.14
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.2.0
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-SimilarStructures: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.18.1
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.2.3
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.41
    ChimeraX-Umap: 1.0
    ChimeraX-uniprot: 2.3.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.4.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.4
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.2
    contourpy: 1.3.1
    cxservices: 1.2.3
    cycler: 0.12.1
    Cython: 3.0.10
    debugpy: 1.8.9
    decorator: 5.1.1
    docutils: 0.21.2
    executing: 2.1.0
    filelock: 3.15.4
    finufft: 2.3.1
    fonttools: 4.55.3
    funcparserlib: 2.0.0a0
    glfw: 2.8.0
    grako: 3.16.5
    h11: 0.14.0
    h5py: 3.12.1
    html2text: 2024.2.26
    httpcore: 1.0.7
    httpx: 0.28.1
    idna: 3.10
    ihm: 1.3
    imagecodecs: 2024.6.1
    imagesize: 1.4.1
    importlib_metadata: 8.0.0
    importlib_resources: 6.4.0
    inflect: 7.3.1
    ipykernel: 6.29.5
    ipython: 8.26.0
    ipywidgets: 8.1.5
    jaraco.context: 5.3.0
    jaraco.functools: 4.0.1
    jaraco.text: 3.12.1
    jedi: 0.19.1
    Jinja2: 3.1.4
    jupyter_client: 8.6.2
    jupyter_core: 5.7.2
    jupyterlab_widgets: 3.0.13
    kiwisolver: 1.4.7
    line_profiler: 4.1.3
    lxml: 5.2.2
    lz4: 4.3.3
    MarkupSafe: 3.0.2
    matplotlib: 3.9.2
    matplotlib-inline: 0.1.7
    more-itertools: 10.3.0
    msgpack: 1.0.8
    ndindex: 1.9.2
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.10.2
    numpy: 1.26.4
    openvr: 1.26.701
    ordered-set: 4.1.0
    packaging: 23.2
    packaging: 24.1
    ParmEd: 4.2.2
    parso: 0.8.4
    pep517: 0.13.1
    pexpect: 4.9.0
    pillow: 10.4.0
    pip: 24.2
    pkginfo: 1.11.1
    platformdirs: 4.3.6
    platformdirs: 4.2.2
    prompt_toolkit: 3.0.48
    psutil: 6.0.0
    ptyprocess: 0.7.0
    pure_eval: 0.2.3
    py-cpuinfo: 9.0.0
    pycollada: 0.8
    pydicom: 2.4.4
    pyelftools: 0.31
    Pygments: 2.18.0
    pynmrstar: 3.3.4
    pynrrd: 1.0.0
    PyOpenGL: 3.1.7
    PyOpenGL-accelerate: 3.1.7
    pyopenxr: 1.0.3401
    pyparsing: 3.2.0
    pyproject_hooks: 1.2.0
    PyQt6-commercial: 6.7.1
    PyQt6-Qt6: 6.7.3
    PyQt6-WebEngine-commercial: 6.7.0
    PyQt6-WebEngine-Qt6: 6.7.3
    PyQt6-WebEngineSubwheel-Qt6: 6.7.3
    PyQt6_sip: 13.8.0
    python-dateutil: 2.9.0.post0
    pytz: 2024.2
    pyzmq: 26.2.0
    qtconsole: 5.5.2
    QtPy: 2.4.2
    qtshim: 1.0
    RandomWords: 0.4.0
    requests: 2.32.3
    scipy: 1.14.0
    setuptools: 72.1.0
    sfftk-rw: 0.8.1
    six: 1.16.0
    sniffio: 1.3.1
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.6
    Sphinx: 8.0.2
    sphinx-autodoc-typehints: 2.2.3
    sphinxcontrib-applehelp: 2.0.0
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 2.0.0
    sphinxcontrib-htmlhelp: 2.1.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 2.0.0
    sphinxcontrib-serializinghtml: 2.0.0
    stack-data: 0.6.3
    superqt: 0.6.3
    tables: 3.10.1
    tcia_utils: 1.5.1
    tifffile: 2024.7.24
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.4.2
    traitlets: 5.14.3
    typeguard: 4.3.0
    typing_extensions: 4.12.2
    typing_extensions: 4.12.2
    tzdata: 2024.2
    urllib3: 2.2.3
    wcwidth: 0.2.13
    webcolors: 24.6.0
    wheel: 0.43.0
    wheel: 0.43.0
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.13
    zipp: 3.19.2
}}}
"	defect	closed	normal		Window Toolkit		can't reproduce		Tom Goddard				all	ChimeraX