id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
17049	Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device returned engine == 0	chimerax-bug-report@…	Tom Goddard	"{{{
The following bug report has been submitted:
Platform:        macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault

Current thread 0x00007ff84db779c0 (most recent call first):
  File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py"", line 275 in event_loop
  File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py"", line 892 in init
  File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py"", line 1043 in 
  File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py"", line 87 in _run_code
  File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py"", line 197 in _run_module_as_main


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{
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  ""procRole"" : ""Background"",
  ""version"" : 2,
  ""userID"" : 501,
  ""deployVersion"" : 210,
  ""modelCode"" : ""MacBookPro14,1"",
  ""coalitionID"" : 2024,
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  ""captureTime"" : ""2025-03-08 20:57:32.9723 -0800"",
  ""incident"" : ""E07604B4-4A16-449A-88AB-580B995EFBA8"",
  ""pid"" : 18662,
  ""cpuType"" : ""X86-64"",
  ""roots_installed"" : 0,
  ""bug_type"" : ""309"",
  ""procLaunch"" : ""2025-03-07 21:05:53.0980 -0800"",
  ""procStartAbsTime"" : 343047890924330,
  ""procExitAbsTime"" : 383150892382527,
  ""procName"" : ""ChimeraX"",
  ""procPath"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/MacOS\/ChimeraX"",
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  ""parentProc"" : ""launchd"",
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  ""coalitionName"" : ""edu.ucsf.cgl.ChimeraX"",
  ""crashReporterKey"" : ""F24801D6-C783-D0EB-FE81-23671F61C372"",
  ""codeSigningID"" : ""edu.ucsf.cgl.ChimeraX"",
  ""codeSigningTeamID"" : ""LWV8X224YF"",
  ""codeSigningFlags"" : 570491649,
  ""codeSigningValidationCategory"" : 6,
  ""codeSigningTrustLevel"" : 0,
  ""wakeTime"" : 32,
  ""sleepWakeUUID"" : ""DE87079C-F171-44DB-8813-E77F839E5AF0"",
  ""sip"" : ""enabled"",
  ""vmRegionInfo"" : ""0x18 is not in any region.  Bytes before following region: 140737486696424\n      REGION TYPE                    START - END         [ VSIZE] PRT\/MAX SHRMOD  REGION DETAIL\n      UNUSED SPACE AT START\n--->  \n      shared memory            7fffffe6b000-7fffffe6c000 [    4K] r-x\/r-x SM=SHM  "",
  ""exception"" : {""codes"":""0x0000000000000001, 0x0000000000000018"",""rawCodes"":[1,24],""type"":""EXC_BAD_ACCESS"",""signal"":""SIGSEGV"",""subtype"":""KERN_INVALID_ADDRESS at 0x0000000000000018""},
  ""termination"" : {""flags"":0,""code"":11,""namespace"":""SIGNAL"",""indicator"":""Segmentation fault: 11"",""byProc"":""ChimeraX"",""byPid"":18662},
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===== Log before crash start =====
Startup Messages  
---  
warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR
bundle with that from NMRSTAR bundle  
  

> set bgColor white

> lighting flat

UCSF ChimeraX version: 1.6.1 (2023-05-09)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> close

> cd ""/Users/sebols/Library/CloudStorage/GoogleDrive-sebols@uw.edu/My
> Drive/Projects/Main-LOR24/LOR24 Data/Fig 6/""

Current working directory is: /Users/sebols/Library/CloudStorage/GoogleDrive-
sebols@uw.edu/My Drive/Projects/Main-LOR24/LOR24 Data/Fig 6  

> open ./1Fab_scrubbed/250226_LOR24_PreF_1Fab.pdb

Chain information for 250226_LOR24_PreF_1Fab.pdb #1  
---  
Chain | Description  
A B C | No description available  
H | No description available  
L | No description available  
  

> open ./1Fab_scrubbed/250304_MPE8_PreF_1Fab.pdb

Chain information for 250304_MPE8_PreF_1Fab.pdb #2  
---  
Chain | Description  
A B C | No description available  
H | No description available  
L | No description available  
  

> open ./1Fab_scrubbed/250304_LOR69_PreF_1Fab.pdb

Chain information for 250304_LOR69_PreF_1Fab.pdb #3  
---  
Chain | Description  
A B C | No description available  
H | No description available  
L | No description available  
  

> graphics bgColor white

> graphics silhouettes true width 2.5

> lighting gentle

> delete H

> color all byhetero

> view matrix camera
> -0.78633,0.1369,-0.60241,54.349,-0.61512,-0.083145,0.78404,283.93,0.057244,0.9871,0.1496,169.63

> hide all atoms

> show all cartoons

> mmaker #2-3/A:307-315,42-45 to #1/A:307-315,42-45

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 250226_LOR24_PreF_1Fab.pdb, chain A (#1) with
250304_MPE8_PreF_1Fab.pdb, chain A (#2), sequence alignment score = 47.9  
RMSD between 13 pruned atom pairs is 0.344 angstroms; (across all 13 pairs:
0.344)  
  
Matchmaker 250226_LOR24_PreF_1Fab.pdb, chain A (#1) with
250304_LOR69_PreF_1Fab.pdb, chain A (#3), sequence alignment score = 68.7  
RMSD between 13 pruned atom pairs is 0.315 angstroms; (across all 13 pairs:
0.315)  
  

> delete /B,C

> color /A light gray

> color #1/H #6C96C4

> color #1/L #A5BCD6

> color #2/H #6EC25F

> color #2/L #A6D79D

> color #3/H #B25D56

> color #3/L #D69B96

> rename #1 LOR24-Fab

> rename #2 MPE8_5u68

> rename #3 LOR69-Fab

> hide #1.1 models

> hide #2.1 models

> hide #3.1 models

> select clear

> select /A:51-176,190-253,278-304,322-339,353-376,392-463,474-530

7690 atoms, 7758 bonds, 3 pseudobonds, 1010 residues, 6 models selected  

> delete sel

> select #1/H:1-25,34-49,60-96,113-125/L:1-24,37-50,55-89,99-110

921 atoms, 939 bonds, 3 pseudobonds, 131 residues, 2 models selected  

> select add #2/H:1-25,33-49,60-96,114-124/L:1-21,33-48,54-88,99-108

2203 atoms, 2240 bonds, 3 pseudobonds, 303 residues, 3 models selected  

> select add #3/H:1-25,34-49,59-61,66-96,110-125/L:1-24,34-49,53-88,99-110

3471 atoms, 3528 bonds, 3 pseudobonds, 470 residues, 4 models selected  

> delete sel

> lighting gentle depthCue true depthCueStart 0.4 depthCueEnd 0.6

> set silhouetteDepthJump 0.4

> hide #3 models

> view matrix camera
> 0.66775,-0.45742,-0.58727,116,-0.42982,0.40719,-0.80588,152.22,0.60773,0.79056,0.075298,162.68

> select #1/A:309,310,273,277/H:105

44 atoms, 41 bonds, 5 residues, 1 model selected  

> select add #2/A:309,310,273,277/H:57

88 atoms, 82 bonds, 10 residues, 2 models selected  

> show sel atoms

> style sel stick

Changed 88 atom styles  

> color sel byhetero

> select clear

> hide #2 models

> save ./fig_panels/LOR24_PreF_Y105.png supersample 5 transparentBackground
> true

> hide #1 models

> show #2 models

> hide #2.1 models

> save ./fig_panels/MPE8_PreF_Y56.png supersample 5 transparentBackground true

> show #1-3 models

> hide #1.1#2.1#3.1 models

> hide all atoms

> view matrix camera
> -0.43653,-0.89632,-0.077879,127.42,-0.11969,0.14364,-0.98236,103.93,0.89168,-0.41952,-0.16998,129.46

> select #1/A:344/H:52,54,56

32 atoms, 29 bonds, 4 residues, 1 model selected  

> select add #2/A:344/H:28,30,31

59 atoms, 53 bonds, 8 residues, 2 models selected  

> select add #3/A:344/H:103/L:32,50

97 atoms, 89 bonds, 12 residues, 3 models selected  

> show sel atoms

> style sel stick

Changed 97 atom styles  

> color sel byhetero

> select clear

> hide #2-3 models

> save ./fig_panels/LOR24_PreF_D344_GRAB-motif.png supersample 5
> transparentBackground true

> hide #1 models

> show #2 models

> hide #2.1 models

> save ./fig_panels/MPE8_PreF_D344_GRAB-motif.png supersample 5
> transparentBackground true

> hide #2 models

> show #3 models

> hide #3.1 models

> save ./fig_panels/LOR69_PreF_D344_GRAB-motif.png supersample 5
> transparentBackground true

> show #1-3 models

> hide #1.1#2.1#3.1 models

> hide all atoms

> view matrix camera
> -0.44534,-0.77614,-0.44642,113.11,-0.3885,0.61673,-0.68462,145.75,0.80667,-0.13147,-0.57619,112.91

> select add #3/A:384,385/H:52-57

54 atoms, 53 bonds, 8 residues, 1 model selected  

> show sel atoms

> style sel stick

Changed 54 atom styles  

> color sel byhetero

> select clear

> hide #1-2 models

> save ./fig_panels/LOR69_PreF_D385_GRAB-motif.png supersample 5
> transparentBackground true

> show #1-3 models

> hide #1.1#2.1#3.1 models

> hide all atoms

> view matrix camera
> 0.65911,-0.71615,-0.22958,125.92,0.46568,0.62838,-0.62312,161.16,0.5905,0.30381,0.74766,181.03

> select #1/A:310,269 : select add #2/A:310,269 : select add #3/A:310,269 : select add /A:310,269

208 atoms, 200 bonds, 25 residues, 3 models selected  

> show sel atoms

> style sel stick

Changed 208 atom styles  

> color sel byhetero

> select clear

> hide #2-3 models

> save ./fig_panels/LOR24_PreF_D310_D269_GRAB-motif.png supersample 5
> transparentBackground true

> hide #1 models

> show #2 models

> hide #2.1 models

> save ./fig_panels/MPE8_PreF_D310_D269_GRAB-motif.png supersample 5
> transparentBackground true

> hide #2 models

> show #3 models

> hide #3.1 models

> save ./fig_panels/LOR69_PreF_D310_D269_GRAB-motif.png supersample 5
> transparentBackground true

> show #1-3 models

> hide #1.1#2.1#3.1 models

> hide all atoms

> view matrix camera
> -0.51698,-0.75061,0.41147,140.19,-0.80783,0.58681,0.055422,179.01,-0.28305,-0.30376,-0.90973,126.27

> select #1/A:312 : select add #2/A:312 : select add #3/A:312 : select add /A:312

135 atoms, 132 bonds, 15 residues, 3 models selected  

> show sel atoms

> style sel stick

Changed 135 atom styles  

> color sel byhetero

> select clear

> hide #!2 models

> hide #!3 models

> show #!2 models

> hide #!1 models

> show #!3 models

> hide #!2 models

> show #!1 models

> hide #!3 models

> show #!2 models

> hide #!1 models

> hide #!2 models

> show #!1 models

> view matrix camera
> -0.43653,-0.89632,-0.077879,127.42,-0.11969,0.14364,-0.98236,103.93,0.89168,-0.41952,-0.16998,129.46

> show #1-3 models

> hide #1.1#2.1#3.1 models

> hide all atoms

> view matrix camera
> -0.43653,-0.89632,-0.077879,127.42,-0.11969,0.14364,-0.98236,103.93,0.89168,-0.41952,-0.16998,129.46

> select #1/A:344/H:52,54,56

32 atoms, 29 bonds, 4 residues, 1 model selected  

> select add #2/A:344/H:28,30,31

59 atoms, 53 bonds, 8 residues, 2 models selected  

> select add #3/A:344/H:103/L:32,50

97 atoms, 89 bonds, 12 residues, 3 models selected  

> show sel atoms

> style sel stick

Changed 97 atom styles  

> color sel byhetero

> select clear

> lighting gentle depthCue true depthCueStart 0.5 depthCueEnd 0.6

> lighting gentle depthCue true depthCueStart 0.3 depthCueEnd 0.6

> lighting gentle depthCue true depthCueStart 0.1 depthCueEnd 0.6

> lighting gentle depthCue true depthCueStart 0.4 depthCueEnd 0.6

> view matrix

view matrix camera
-0.44078,-0.8764,0.19401,140.07,-0.73656,0.47669,0.47982,191.09,-0.513,0.068591,-0.85564,117.79  
view matrix models
#1,1,0,0,0,0,1,0,0,0,0,1,0,#1.1,1,0,0,0,0,1,0,0,0,0,1,0,#2,-0.081274,0.084418,-0.99311,411.75,0.9527,0.29932,-0.052523,248.84,0.29283,-0.95041,-0.10475,381.92,#2.1,1,0,0,0,0,1,0,0,0,0,1,0,#3,-0.58114,0.81357,-0.019388,121.15,-0.81181,-0.5779,0.083647,333.53,0.056848,0.06435,0.99631,-1.4823,#3.1,1,0,0,0,0,1,0,0,0,0,1,0  
  

> lighting gentle depthCue true depthCueStart 0.4 depthCueEnd 0.6

> set silhouetteDepthJump 0.4

> lighting gentle depthCue true depthCueStart 0.4 depthCueEnd 0.5

> lighting gentle depthCue true depthCueStart 0.4 depthCueEnd 0.6

> lighting gentle depthCue true depthCueStart 0.4 depthCueEnd 0.8

> lighting gentle depthCue true depthCueStart 0.4 depthCueEnd 0.4

> lighting gentle depthCue true depthCueStart 0.6 depthCueEnd 0.4

> lighting gentle depthCue true depthCueStart 0.6 depthCueEnd 0.6

> lighting gentle depthCue true depthCueStart 0.4 depthCueEnd 0.6

> lighting gentle depthCue true depthCueStart 0.1 depthCueEnd 0.6

> lighting gentle depthCue true depthCueStart 0.01 depthCueEnd 0.6

> lighting gentle depthCue true depthCueStart 0.4 depthCueEnd 0.6

> view /A:344 clip true pad 0.4

> view /A:344 clip true pad 0.2

> view /A:344 clip true pad 0.1

> view /A:344 clip true pad 0.05

> view /A:344 clip true pad 0.1

> view /A:344 clip true pad 0.01

> view /A:344 clip true pad 0.05

> view /A:344 clip true pad 0.001

> view /A:344 clip true pad 0.01

> view /A:344 clip true pad 0.05

> ui tool show ""Side View""

> hide #!3 models

> hide #!1 models

> show #!3 models

> show #!1 models

> hide #!2 models

> hide #!3 models

> view

> show #!2 models

> show #!3 models

> ui tool show ""Show Sequence Viewer""

> sequence chain #1/A

Alignment identifier is 1/A  

> select #1/A:383-384

15 atoms, 14 bonds, 2 residues, 1 model selected  

> select #1/A:383-391

74 atoms, 76 bonds, 9 residues, 1 model selected  

> select #1/A:377

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select #1/A:377

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select #1/A:465

9 atoms, 8 bonds, 1 residue, 1 model selected  

> select #1/A:465-473

67 atoms, 68 bonds, 9 residues, 1 model selected  

> select #1/A:352

11 atoms, 11 bonds, 1 residue, 1 model selected  

> select #1/A:352

11 atoms, 11 bonds, 1 residue, 1 model selected  

> select #1/A:254-263,268-276,377-382

190 atoms, 187 bonds, 25 residues, 1 model selected  

> close

> cd ""/Users/sebols/Library/CloudStorage/GoogleDrive-sebols@uw.edu/My
> Drive/Projects/Main-LOR24/LOR24 Data/Fig 6/""

Current working directory is: /Users/sebols/Library/CloudStorage/GoogleDrive-
sebols@uw.edu/My Drive/Projects/Main-LOR24/LOR24 Data/Fig 6  

> open ./1Fab_scrubbed/250226_LOR24_PreF_1Fab.pdb

Chain information for 250226_LOR24_PreF_1Fab.pdb #1  
---  
Chain | Description  
A B C | No description available  
H | No description available  
L | No description available  
  

> open ./1Fab_scrubbed/250304_MPE8_PreF_1Fab.pdb

Chain information for 250304_MPE8_PreF_1Fab.pdb #2  
---  
Chain | Description  
A B C | No description available  
H | No description available  
L | No description available  
  

> open ./1Fab_scrubbed/250304_LOR69_PreF_1Fab.pdb

Chain information for 250304_LOR69_PreF_1Fab.pdb #3  
---  
Chain | Description  
A B C | No description available  
H | No description available  
L | No description available  
  

> graphics bgColor white

> graphics silhouettes true width 2.5

> lighting gentle

> delete H

> color all byhetero

> view matrix camera
> -0.78633,0.1369,-0.60241,54.349,-0.61512,-0.083145,0.78404,283.93,0.057244,0.9871,0.1496,169.63

> hide all atoms

> show all cartoons

> mmaker #2-3/A:307-315,42-45 to #1/A:307-315,42-45

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 250226_LOR24_PreF_1Fab.pdb, chain A (#1) with
250304_MPE8_PreF_1Fab.pdb, chain A (#2), sequence alignment score = 47.9  
RMSD between 13 pruned atom pairs is 0.344 angstroms; (across all 13 pairs:
0.344)  
  
Matchmaker 250226_LOR24_PreF_1Fab.pdb, chain A (#1) with
250304_LOR69_PreF_1Fab.pdb, chain A (#3), sequence alignment score = 68.7  
RMSD between 13 pruned atom pairs is 0.315 angstroms; (across all 13 pairs:
0.315)  
  

> hide #!2 models

> hide #!3 models

> ui tool show ""Show Sequence Viewer""

> sequence chain #1/A #1/B #1/C

Alignment identifier is 1  

> select #1/A-C:364

33 atoms, 30 bonds, 3 residues, 1 model selected  

> select #1/A-C:364

33 atoms, 30 bonds, 3 residues, 1 model selected  

> show sel atoms

> style sel stick

Changed 33 atom styles  

> color sel byhetero

> select
> #1/A-C:74-98,149-158,161-172,195-206,217-240,254-263,268-276,278-283,355-357,369-371,377-382,474-477,492-518

3363 atoms, 3342 bonds, 453 residues, 1 model selected  

> select #1/A-C:497

15 atoms, 12 bonds, 3 residues, 1 model selected  

> select #1/A-C:497

15 atoms, 12 bonds, 3 residues, 1 model selected  

> show sel atoms

> style sel stick

Changed 15 atom styles  

> color sel byhetero

> select #1/A-C:479

24 atoms, 21 bonds, 3 residues, 1 model selected  

> select #1/A-C:479

24 atoms, 21 bonds, 3 residues, 1 model selected  

> show sel atoms

> select #1/A-C:479,497,378

54 atoms, 45 bonds, 9 residues, 1 model selected  

> show sel atoms

> style sel stick

Changed 54 atom styles  

> color sel byhetero

> color sel orange

> select #1/A-C:42,45,50,272,276,305,307,310,312,344,346,347,363,364

312 atoms, 279 bonds, 42 residues, 1 model selected  

> show sel atoms

> style sel stick

Changed 312 atom styles  

> color sel medium blue

> style sel sphere

Changed 312 atom styles  

> select #1/A-C:377,378,380,385,390

96 atoms, 84 bonds, 15 residues, 1 model selected  

> show sel atoms

> style sel sphere

Changed 96 atom styles  

> color sel red

> select #1/A-C:479,497

39 atoms, 33 bonds, 6 residues, 1 model selected  

> style sel sphere

Changed 39 atom styles  

> select #1/A-C:50,305,307,346,347

84 atoms, 72 bonds, 15 residues, 1 model selected  

> color sel forest green

> mmaker #2-3/A:307-315,42-45 to #1/A:307-315,42-45

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 250226_LOR24_PreF_1Fab.pdb, chain A (#1) with
250304_MPE8_PreF_1Fab.pdb, chain A (#2), sequence alignment score = 47.9  
RMSD between 13 pruned atom pairs is 0.344 angstroms; (across all 13 pairs:
0.344)  
  
Matchmaker 250226_LOR24_PreF_1Fab.pdb, chain A (#1) with
250304_LOR69_PreF_1Fab.pdb, chain A (#3), sequence alignment score = 68.7  
RMSD between 13 pruned atom pairs is 0.315 angstroms; (across all 13 pairs:
0.315)  
  

> delete /C

> color /A light gray

> color #1/H #6C96C4

> color #1/L #A5BCD6

> color #2/H #6EC25F

> color #2/L #A6D79D

> color #3/H #B25D56

> color #3/L #D69B96

> rename #1 LOR24-Fab

> rename #2 MPE8_5u68

> rename #3 LOR69-Fab

> hide #1.1 models

> hide #2.1 models

> hide #3.1 models

> select clear

> select /A:51-176,190-253,278-304,322-339,353-360,365-376,392-463,474-530

7589 atoms, 7654 bonds, 3 pseudobonds, 998 residues, 6 models selected  

> select add /B:1-420,436-447,459-530

17372 atoms, 17568 bonds, 6 pseudobonds, 2282 residues, 6 models selected  

> delete sel

> show #!3 models

> hide #!1 models

> select #3/H:58

7 atoms, 6 bonds, 1 residue, 1 model selected  

> show sel atoms

> hide sel atoms

> select #3/H:59

8 atoms, 7 bonds, 1 residue, 1 model selected  

> show sel atoms

> hide sel atoms

> show #!2 models

> select add #3

2866 atoms, 2922 bonds, 8 pseudobonds, 371 residues, 2 models selected  

> select subtract #3

Nothing selected  

> hide #!3 models

> select #2/H:33

6 atoms, 5 bonds, 1 residue, 1 model selected  

> ui tool show ""Show Sequence Viewer""

> sequence chain #2/L

Alignment identifier is 2/L  

Unsupported scale factor (0.000000) detected on Display0  

QPainter::begin: Paint device returned engine == 0, type: 3  


===== Log before crash end =====

Log:
Startup Messages  
---  
warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR
bundle with that from NMRSTAR bundle  
  

> set bgColor white

> lighting flat

UCSF ChimeraX version: 1.6.1 (2023-05-09)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 4.1 INTEL-20.7.3
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 640
OpenGL vendor: Intel Inc.

Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: MacBookPro14,1
      Processor Name: Dual-Core Intel Core i5
      Processor Speed: 2,3 GHz
      Number of Processors: 1
      Total Number of Cores: 2
      L2 Cache (per Core): 256 KB
      L3 Cache: 4 MB
      Hyper-Threading Technology: Enabled
      Memory: 16 GB
      System Firmware Version: 529.140.2.0.0
      OS Loader Version: 577.140.2~30
      SMC Version (system): 2.43f11

Software:

    System Software Overview:

      System Version: macOS 13.7.4 (22H420)
      Kernel Version: Darwin 22.6.0
      Time since boot: 1 hour, 9 minutes

Graphics/Displays:

    Intel Iris Plus Graphics 640:

      Chipset Model: Intel Iris Plus Graphics 640
      Type: GPU
      Bus: Built-In
      VRAM (Dynamic, Max): 1536 MB
      Vendor: Intel
      Device ID: 0x5926
      Revision ID: 0x0006
      Metal Support: Metal 3
      Displays:
        27E2N1100:
          Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
          UI Looks like: 1920 x 1080 @ 60.00Hz
          Framebuffer Depth: 30-Bit Color (ARGB2101010)
          Display Serial Number: UK02410065555
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Rotation: Supported
          Connection Type: DVI or HDMI
          Adapter Firmware Version: 0,00


Installed Packages:
    alabaster: 0.7.13
    appdirs: 1.4.4
    appnope: 0.1.3
    asttokens: 2.2.1
    Babel: 2.12.1
    backcall: 0.2.0
    beautifulsoup4: 4.11.2
    blockdiag: 3.0.0
    build: 0.10.0
    certifi: 2021.10.8
    cftime: 1.6.2
    charset-normalizer: 3.1.0
    ChimeraX-AddCharge: 1.5.9.1
    ChimeraX-AddH: 2.2.5
    ChimeraX-AlignmentAlgorithms: 2.0.1
    ChimeraX-AlignmentHdrs: 3.3.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.9.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.43.10
    ChimeraX-AtomicLibrary: 10.0.6
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3.2
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.1
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.8
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.2
    ChimeraX-ChangeChains: 1.0.2
    ChimeraX-CheckWaters: 1.3.1
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.3
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.6.1
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.4.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2
    ChimeraX-DistMonitor: 1.4
    ChimeraX-DockPrep: 1.1.1
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.7
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.2
    ChimeraX-Map: 1.1.4
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.0.12
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.12
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.9
    ChimeraX-ModelPanel: 1.3.7
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.0
    ChimeraX-NRRD: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.10.1
    ChimeraX-PDB: 2.7.2
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 3.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.1
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.8.3
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.10.3
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1.2
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Topography: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.28.4
    ChimeraX-uniprot: 2.2.2
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.1
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.1.3
    contourpy: 1.0.7
    cxservices: 1.2.2
    cycler: 0.11.0
    Cython: 0.29.33
    debugpy: 1.6.7
    decorator: 5.1.1
    docutils: 0.19
    executing: 1.2.0
    filelock: 3.9.0
    fonttools: 4.39.3
    funcparserlib: 1.0.1
    grako: 3.16.5
    h5py: 3.8.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.35
    imagecodecs: 2022.2.22
    imagesize: 1.4.1
    importlib-metadata: 6.6.0
    ipykernel: 6.21.1
    ipython: 8.10.0
    ipython-genutils: 0.2.0
    ipywidgets: 8.0.6
    jedi: 0.18.2
    Jinja2: 3.1.2
    jupyter-client: 8.0.2
    jupyter-core: 5.3.0
    jupyterlab-widgets: 3.0.7
    kiwisolver: 1.4.4
    line-profiler: 4.0.2
    lxml: 4.9.2
    lz4: 4.3.2
    MarkupSafe: 2.1.2
    matplotlib: 3.6.3
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.6
    netCDF4: 1.6.2
    networkx: 2.8.8
    nibabel: 5.0.1
    nptyping: 2.5.0
    numexpr: 2.8.4
    numpy: 1.23.5
    openvr: 1.23.701
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 9.3.0
    pip: 23.0
    pkginfo: 1.9.6
    platformdirs: 3.5.0
    prompt-toolkit: 3.0.38
    psutil: 5.9.4
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.14.0
    pynrrd: 1.0.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    pyproject-hooks: 1.0.0
    PyQt6-commercial: 6.4.2
    PyQt6-Qt6: 6.4.3
    PyQt6-sip: 13.4.1
    PyQt6-WebEngine-commercial: 6.4.0
    PyQt6-WebEngine-Qt6: 6.4.3
    python-dateutil: 2.8.2
    pytz: 2023.3
    pyzmq: 25.0.2
    qtconsole: 5.4.0
    QtPy: 2.3.1
    RandomWords: 0.4.0
    requests: 2.28.2
    scipy: 1.9.3
    setuptools: 67.4.0
    setuptools-scm: 7.0.5
    sfftk-rw: 0.7.3
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.4.1
    sphinx: 6.1.3
    sphinx-autodoc-typehints: 1.22
    sphinxcontrib-applehelp: 1.0.4
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.1
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.6.2
    tables: 3.7.0
    tcia-utils: 1.2.0
    tifffile: 2022.10.10
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.3.1
    traitlets: 5.9.0
    typing-extensions: 4.5.0
    tzdata: 2023.3
    urllib3: 1.26.15
    wcwidth: 0.2.6
    webcolors: 1.12
    wheel: 0.38.4
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.7
    zipp: 3.15.0
}}}
"	defect	closed	normal		Window Toolkit		duplicate						all	ChimeraX