id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 17095 Crash on Mac waking from sleep chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-14.7.3-x86_64-i386-64bit ChimeraX Version: 1.8.dev202404140648 (2024-04-14 06:48:11 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Segmentation fault Current thread 0x00007ff851f41fc0 (most recent call first): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py"", line 283 in event_loop File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1006 in init File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1169 in File """", line 88 in _run_code File """", line 198 in _run_module_as_main Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.surface._surface, chimerax.pdb_lib._load_libs, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, chimerax.pdb._pdbio, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, PIL._imagingmath (total: 53) {""app_name"":""ChimeraX"",""timestamp"":""2025-03-13 22:23:52.00 +0000"",""app_version"":""1.8.0"",""slice_uuid"":""194a3167-3db5-3029-8d22-1d742b826bb9"",""build_version"":""1.8.0.0"",""platform"":1,""bundleID"":""edu.ucsf.cgl.ChimeraX"",""share_with_app_devs"":0,""is_first_party"":0,""bug_type"":""309"",""os_version"":""macOS 14.7.3 (23H417)"",""roots_installed"":0,""name"":""ChimeraX"",""incident_id"":""7D27E50C-7FFE-4156-9CDD-1DAE81B10616""} { ""uptime"" : 190000, ""procRole"" : ""Background"", ""version"" : 2, ""userID"" : 503, ""deployVersion"" : 210, ""modelCode"" : ""MacBookPro16,2"", ""coalitionID"" : 5148, ""osVersion"" : { ""train"" : ""macOS 14.7.3"", ""build"" : ""23H417"", ""releaseType"" : ""User"" }, ""captureTime"" : ""2025-03-13 22:23:41.0943 +0000"", ""codeSigningMonitor"" : 0, ""incident"" : ""7D27E50C-7FFE-4156-9CDD-1DAE81B10616"", ""pid"" : 7355, ""cpuType"" : ""X86-64"", ""roots_installed"" : 0, ""bug_type"" : ""309"", ""procLaunch"" : ""2025-03-13 14:14:09.1544 +0000"", ""procStartAbsTime"" : 185126265281979, ""procExitAbsTime"" : 196441457629992, ""procName"" : ""ChimeraX"", ""procPath"" : ""\/Applications\/ChimeraX_Daily.app\/Contents\/MacOS\/ChimeraX"", ""bundleInfo"" : {""CFBundleShortVersionString"":""1.8.0"",""CFBundleVersion"":""1.8.0.0"",""CFBundleIdentifier"":""edu.ucsf.cgl.ChimeraX""}, ""storeInfo"" : {""deviceIdentifierForVendor"":""7FF298D8-9CAA-50B0-B14E-B75862530066"",""thirdParty"":true}, ""parentProc"" : ""launchd"", ""parentPid"" : 1, ""coalitionName"" : ""edu.ucsf.cgl.ChimeraX"", ""crashReporterKey"" : ""29B489BC-839B-868D-A960-82E747B97847"", ""codeSigningID"" : ""edu.ucsf.cgl.ChimeraX"", ""codeSigningTeamID"" : ""LWV8X224YF"", ""codeSigningFlags"" : 570491649, ""codeSigningValidationCategory"" : 6, ""codeSigningTrustLevel"" : 4294967295, ""wakeTime"" : 2536, ""bridgeVersion"" : {""build"":""22P3051"",""train"":""9.3""}, ""sleepWakeUUID"" : ""741B8EB3-03A2-4A61-89EE-64F990F95457"", ""sip"" : ""enabled"", ""vmRegionInfo"" : ""0 is not in any region. 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\n"", ""legacyInfo"" : { ""threadTriggered"" : { ""name"" : ""CrBrowserMain"", ""queue"" : ""com.apple.main-thread"" } }, ""logWritingSignature"" : ""5bf87bef3faa28f255cd783d56a19b3ea480104d"", ""trialInfo"" : { ""rollouts"" : [ { ""rolloutId"" : ""6297d96be2c9387df974efa4"", ""factorPackIds"" : { }, ""deploymentId"" : 240000032 }, { ""rolloutId"" : ""61675b89201f677a9a4cbd65"", ""factorPackIds"" : { ""HEALTH_FEATURE_AVAILABILITY"" : ""65a855f5f087695cfac03d1f"" }, ""deploymentId"" : 240000170 } ], ""experiments"" : [ ] } } ===== Log before crash start ===== UCSF ChimeraX version: 1.8.dev202404140648 (2024-04-14) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""/Users/chitrajoshi/Desktop/SLCO2A1/structure/Publication/Refined > structures/Zafirlukast/RealSpaceRefine_30/ZLK_real_space_refined_030.pdb"" Chain information for ZLK_real_space_refined_030.pdb #1 --- Chain | Description A | No description available 4 atoms have alternate locations. Control/examine alternate locations with Altloc Explorer [start tool...] or the altlocs command. > open /Users/chitrajoshi/Downloads/cryosparc_P79_J77_008_volume_map.mrc Opened cryosparc_P79_J77_008_volume_map.mrc as #2, grid size 300,300,300, pixel 0.832, shown at level 0.126, step 2, values float32 > open /Users/chitrajoshi/Downloads/cryosparc_P79_J77_008_volume_map_sharp.mrc Opened cryosparc_P79_J77_008_volume_map_sharp.mrc as #3, grid size 300,300,300, pixel 0.832, shown at level 0.179, step 2, values float32 > hide #!2 models > hide #!1 models > volume #2 step 1 > volume #3 step 1 > volume flip #2 Opened cryosparc_P79_J77_008_volume_map.mrc z flip as #4, grid size 300,300,300, pixel 0.832, shown at step 1, values float32 > volume flip #3 Opened cryosparc_P79_J77_008_volume_map_sharp.mrc z flip as #5, grid size 300,300,300, pixel 0.832, shown at step 1, values float32 > hide #!5 models > hide #!4 models > show #!1 models > show #!4 models > fitmap #1 inMap #4 Fit molecule ZLK_real_space_refined_030.pdb (#1) to map cryosparc_P79_J77_008_volume_map.mrc z flip (#4) using 4423 atoms average map value = 0.4756, steps = 48 shifted from previous position = 0.0369 rotated from previous position = 0.0899 degrees atoms outside contour = 246, contour level = 0.12556 Position of ZLK_real_space_refined_030.pdb (#1) relative to cryosparc_P79_J77_008_volume_map.mrc z flip (#4) coordinates: Matrix rotation and translation 0.99999927 0.00025238 -0.00118398 0.10273886 -0.00025120 0.99999947 0.00099888 -0.12661938 0.00118423 -0.00099858 0.99999880 -0.00509267 Axis -0.63638415 -0.75450343 -0.16043621 Axis point 0.20939609 -0.00000000 103.42033301 Rotation angle (degrees) 0.08991926 Shift along axis 0.03097042 > volume #4 level 0.2721 > volume #4 level 0.1842 > hide #!4 models > show #!5 models > fitmap #1 inMap #5 Fit molecule ZLK_real_space_refined_030.pdb (#1) to map cryosparc_P79_J77_008_volume_map_sharp.mrc z flip (#5) using 4423 atoms average map value = 1.349, steps = 36 shifted from previous position = 0.0218 rotated from previous position = 0.029 degrees atoms outside contour = 378, contour level = 0.17926 Position of ZLK_real_space_refined_030.pdb (#1) relative to cryosparc_P79_J77_008_volume_map_sharp.mrc z flip (#5) coordinates: Matrix rotation and translation 0.99999920 0.00067357 -0.00107213 0.03793616 -0.00067278 0.99999950 0.00074320 -0.02353566 0.00107264 -0.00074248 0.99999915 -0.01543709 Axis -0.50602529 -0.73051414 -0.45857116 Axis point 12.25185238 0.00000000 37.77011672 Rotation angle (degrees) 0.08410947 Shift along axis 0.00507548 > volume #5 level 0.5874 > color #5 #4ba1a7ff models > color #5 #4ca4aeff models > surface dust #5 size 8.32 > volume #5 level 0.4304 > open ""/Users/chitrajoshi/Desktop/SLCO2A1/structure/Publication/Refined > structures/Zafirlukast/cryosparc_P79_J69_flipped.mrc"" Opened cryosparc_P79_J69_flipped.mrc as #6, grid size 300,300,300, pixel 0.832, shown at level 0.126, step 2, values float32 > open ""/Users/chitrajoshi/Desktop/SLCO2A1/structure/Publication/Refined > structures/Zafirlukast/cryosparc_P79_J69_flipped_sharp.mrc"" Opened cryosparc_P79_J69_flipped_sharp.mrc as #7, grid size 300,300,300, pixel 0.832, shown at level 0.171, step 2, values float32 > open /Users/chitrajoshi/Downloads/cryosparc_P79_J79_008_volume_map_sharp.mrc Opened cryosparc_P79_J79_008_volume_map_sharp.mrc as #8, grid size 300,300,300, pixel 0.832, shown at level 0.178, step 2, values float32 > open /Users/chitrajoshi/Downloads/cryosparc_P79_J79_008_volume_map.mrc Opened cryosparc_P79_J79_008_volume_map.mrc as #9, grid size 300,300,300, pixel 0.832, shown at level 0.126, step 2, values float32 > hide #!5 models > hide #!6 models > hide #!7 models > hide #!8 models > hide #!9 models > volume flip #8 Opened cryosparc_P79_J79_008_volume_map_sharp.mrc z flip as #10, grid size 300,300,300, pixel 0.832, shown at step 1, values float32 > volume flip #9 Opened cryosparc_P79_J79_008_volume_map.mrc z flip as #11, grid size 300,300,300, pixel 0.832, shown at step 1, values float32 > hide #!10 models > hide #!11 models > open /Users/chitrajoshi/Downloads/cryosparc_P79_J83_map_sharp.mrc Opened cryosparc_P79_J83_map_sharp.mrc as #12, grid size 300,300,300, pixel 0.832, shown at level 0.177, step 2, values float32 > volume flip #12 Opened cryosparc_P79_J83_map_sharp.mrc z flip as #13, grid size 300,300,300, pixel 0.832, shown at step 1, values float32 > volume #12 step 1 > volume #13 level 0.4443 > surface dust #13 size 8.32 > volume #13 level 0.7446 > show #!7 models > hide #!13 models > close #2 > close #3 > close #8 > close #9 > close #12 > volume #7 step 1 > volume #7 level 0.3514 > surface dust #7 size 8.32 > volume #7 level 0.4568 > surface dust #7 size 8.32 > volume #7 level 0.4869 > show #!13 models > volume #13 level 0.487 > transparency #7.1#13.1 50 > volume #!7,13 style surface > transparency #7.1#13.1 0 > show #!5 models > volume #5 level 0.487 > hide #!7 models > hide #!13 models > hide #!5 models > show #!7 models > hide #!7 models > show #!13 models > hide #!13 models > show #!13 models > hide #!13 models > show #!13 models > hide #!1 models > show #!5 models > hide #!13 models > show #!13 models > hide #!5 models > show #!5 models > hide #!13 models > show #!13 models > hide #!5 models > show #!5 models > hide #!13 models > show #!13 models > hide #!13 models > show #!13 models > hide #!13 models > show #!13 models > hide #!13 models > show #!13 models > hide #!13 models > show #!13 models > hide #!13 models > show #!13 models > hide #!13 models > hide #!5 models > show #!5 models > show #!13 models > hide #!5 models > show #!7 models > hide #!13 models > show #!13 models > hide #!7 models > show #!7 models > hide #!13 models > show #!13 models > hide #!7 models > show #!7 models > hide #!13 models > show #!5 models > hide #!7 models > hide #!5 models > show #!5 models > show #!7 models > hide #!5 models > show #!5 models > hide #!5 models > show #!5 models > show #!1 models > volume #5 level 0.7382 > hide #!7 models > select add #1 4423 atoms, 4545 bonds, 2 pseudobonds, 566 residues, 2 models selected > show sel atoms > select subtract #1 Nothing selected > select add #5 2 models selected > transparency sel 50 > select subtract #5 Nothing selected > set bgColor white > show #!7 models > hide #!5 models > transparency #7.1 50 > volume #7 level 0.738 > show #!5 models > hide #!5 models > show #!5 models > hide #!5 models > show #!5 models > hide #!5 models > show #!5 models > hide #!7 models > show #!7 models > hide #!7 models > show #!7 models > hide #!7 models > show #!13 models > volume #13 level 0.738 > volume #!5,13 showOutlineBox true > volume #!5,13 showOutlineBox false > transparency #5.1#13.1 0 > hide #!5 models > transparency #13.1 50 > show #!5 models > hide #!13 models > transparency #5.1 50 > show #!13 models > hide #!13 models > show #!13 models > hide #!5 models > show #!5 models > hide #!5 models > show #!5 models > hide #!13 models > show #!13 models > hide #!13 models > show #!13 models > hide #!13 models > show #!13 models > hide #!13 models > show #!13 models > hide #!13 models > show #!13 models > hide #!13 models > show #!13 models > hide #!13 models > show #!13 models > hide #!13 models > show #!13 models > hide #!13 models > show #!13 models > hide #!13 models > show #!13 models > hide #!13 models > show #!13 models > hide #!13 models > show #!13 models > hide #!13 models > show #!13 models > hide #!13 models > hide #!5 models > show #!11 models > volume #11 level 0.738 > volume #11 level 0.17 > show #!10 models > hide #!11 models > volume #10 level 0.738 > transparency #10.1 50 > surface dust #10 size 8.32 > show #!5 models > hide #!5 models > show #!5 models > hide #!5 models > show #!5 models > hide #!5 models > show #!5 models > hide #!5 models > show #!5 models > hide #!5 models > show #!5 models > hide #!5 models > show #!5 models > hide #!5 models > hide #!10 models > show #!4 models > hide #!1 models > hide #!4 models > show #!6 models > volume #6 step 1 > volume #6 level 0.1579 > hide #!6 models > show #!4 models > save ""/Users/chitrajoshi/Desktop/SLCO2A1/structure/Publication/Refined > structures/Zafirlukast/cryosparc_P79_J77_flipped.mrc"" models #4 > save ""/Users/chitrajoshi/Desktop/SLCO2A1/structure/Publication/Refined > structures/Zafirlukast/cryosparc_P79_J77_flipped_sharp.mrc"" models #5 > open > /Users/chitrajoshi/Downloads/J77_viewing_direction_distribution_iteration_008.bild.bild Opened BILD data containing 3072 objects > hide #!4 models > hide #2 models > show #2 models > save ""/Users/chitrajoshi/Desktop/SLCO2A1/structure/Publication/Refined > structures/Zafirlukast/Viewing direction .png"" width 875 height 670 > supersample 4 transparentBackground true > open /Users/chitrajoshi/Downloads/cryosparc_P79_J53_005_volume_map.mrc Opened cryosparc_P79_J53_005_volume_map.mrc as #3, grid size 300,300,300, pixel 0.832, shown at level 0.124, step 2, values float32 > hide #2 models > volume flip #3 Opened cryosparc_P79_J53_005_volume_map.mrc z flip as #8, grid size 300,300,300, pixel 0.832, shown at step 1, values float32 > show #!4 models > volume #4 level 0.124 > hide #!8 models > hide #!4 models > show #!8 models > open /Users/chitrajoshi/Downloads/cryosparc_P79_J54_005_volume_map.mrc Opened cryosparc_P79_J54_005_volume_map.mrc as #9, grid size 300,300,300, pixel 0.832, shown at level 0.125, step 2, values float32 > open /Users/chitrajoshi/Downloads/cryosparc_P79_J55_005_volume_map.mrc Opened cryosparc_P79_J55_005_volume_map.mrc as #12, grid size 300,300,300, pixel 0.832, shown at level 0.128, step 2, values float32 > hide #!8 models > hide #!9 models > volume flip #9 Opened cryosparc_P79_J54_005_volume_map.mrc z flip as #14, grid size 300,300,300, pixel 0.832, shown at step 1, values float32 > volume flip #12 Opened cryosparc_P79_J55_005_volume_map.mrc z flip as #15, grid size 300,300,300, pixel 0.832, shown at step 1, values float32 > hide #!14 models > hide #!15 models > show #!14 models > volume #14 level 0.1911 > show #!15 models > hide #!14 models > volume #15 level 0.2165 > volume #15 level 0.191 > show #!14 models > hide #!15 models > show #!15 models > hide #!14 models > show #!8 models > hide #!15 models > volume #8 level 0.191 > color #8 #bb94e4ff models > show #!14 models > hide #!8 models > show #!8 models > hide #!14 models > ui tool show ""Side View"" > show #!1 models > fitmap #1 inMap #8 Fit molecule ZLK_real_space_refined_030.pdb (#1) to map cryosparc_P79_J53_005_volume_map.mrc z flip (#8) using 4423 atoms average map value = 0.4629, steps = 56 shifted from previous position = 0.0871 rotated from previous position = 0.262 degrees atoms outside contour = 676, contour level = 0.191 Position of ZLK_real_space_refined_030.pdb (#1) relative to cryosparc_P79_J53_005_volume_map.mrc z flip (#8) coordinates: Matrix rotation and translation 0.99999660 -0.00155001 0.00209632 -0.00703026 0.00155355 0.99999736 -0.00169207 -0.03126690 -0.00209369 0.00169532 0.99999637 0.01623145 Axis 0.54477779 0.67385937 0.49912995 Axis point 11.75880681 0.00000000 -0.99262390 Rotation angle (degrees) 0.17813112 Shift along axis -0.01679782 > volume #8 level 0.147 > volume #8 level 0.191 > show #!14 models > hide #!8 models > transparency #14.1 50 > transparency #14.1 0 > transparency #14.1 50 > show #!15 models > hide #!14 models > hide #!15 models > view > open /Users/chitrajoshi/Downloads/cryosparc_P79_J86_009_volume_map.mrc Opened cryosparc_P79_J86_009_volume_map.mrc as #16, grid size 300,300,300, pixel 0.832, shown at level 0.125, step 2, values float32 > fitmap #1 inMap #16 Fit molecule ZLK_real_space_refined_030.pdb (#1) to map cryosparc_P79_J86_009_volume_map.mrc (#16) using 4423 atoms average map value = 0.1465, steps = 112 shifted from previous position = 4.44 rotated from previous position = 5.64 degrees atoms outside contour = 2548, contour level = 0.12542 Position of ZLK_real_space_refined_030.pdb (#1) relative to cryosparc_P79_J86_009_volume_map.mrc (#16) coordinates: Matrix rotation and translation 0.99918952 -0.00977414 0.03904841 -3.31706085 0.00625660 0.99599333 0.08920838 -11.15167491 -0.03976389 -0.08889177 0.99524725 21.27474748 Axis -0.91138249 0.40330200 0.08203325 Axis point 0.00000000 231.77742478 136.64149053 Rotation angle (degrees) 5.60724729 Shift along axis 0.27085505 > volume flip #16 Opened cryosparc_P79_J86_009_volume_map.mrc z flip as #17, grid size 300,300,300, pixel 0.832, shown at step 1, values float32 > fitmap #1 inMap #17 Fit molecule ZLK_real_space_refined_030.pdb (#1) to map cryosparc_P79_J86_009_volume_map.mrc z flip (#17) using 4423 atoms average map value = 0.4833, steps = 84 shifted from previous position = 4.45 rotated from previous position = 5.66 degrees atoms outside contour = 239, contour level = 0.12542 Position of ZLK_real_space_refined_030.pdb (#1) relative to cryosparc_P79_J86_009_volume_map.mrc z flip (#17) coordinates: Matrix rotation and translation 0.99999274 -0.00369430 0.00093440 0.39428453 0.00369592 0.99999166 -0.00174015 -0.27641056 -0.00092796 0.00174359 0.99999805 -0.14486100 Axis 0.41573313 0.22224517 0.88191442 Axis point 73.51562359 109.42701444 0.00000000 Rotation angle (degrees) 0.24006262 Shift along axis -0.02526878 The cached device pixel ratio value was stale on window expose. Please file a QTBUG which explains how to reproduce. > volume #16 step 1 > close #16 > volume #17 level 0.2421 > surface dust #17 size 8.32 > volume #17 level 0.197 > hide #!17 models > show #!5 models > volume #5 level 0.197 > show #!6 models > hide #!5 models > volume #6 level 0.197 > hide #!6 models > show #!17 models > hide #!17 models > show #!6 models > show #!17 models > hide #!17 models > show #!17 models > hide #!17 models > show #!17 models > hide #!17 models > open > /Users/chitrajoshi/Downloads/J86_viewing_direction_distribution_iteration_009.bild.bild Opened BILD data containing 3072 objects > hide #!6 models > hide #!1 models ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.8.dev202404140648 (2024-04-14) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX Compositor returned null texture OpenGL version: 4.1 INTEL-22.5.12 OpenGL renderer: Intel(R) Iris(TM) Plus Graphics OpenGL Engine OpenGL vendor: Intel Inc. Python: 3.11.4 Locale: UTF-8 Qt version: PyQt6 6.6.1, Qt 6.6.1 Qt runtime version: 6.6.3 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro16,2 Processor Name: Quad-Core Intel Core i5 Processor Speed: 2 GHz Number of Processors: 1 Total Number of Cores: 4 L2 Cache (per Core): 512 KB L3 Cache: 6 MB Hyper-Threading Technology: Enabled Memory: 16 GB System Firmware Version: 2069.80.3.0.0 (iBridge: 22.16.13051.0.0,0) OS Loader Version: 580.140.1~51 Software: System Software Overview: System Version: macOS 14.7.3 (23H417) Kernel Version: Darwin 23.6.0 Time since boot: 11 days, 1 hour, 35 minutes Graphics/Displays: Intel Iris Plus Graphics: Chipset Model: Intel Iris Plus Graphics Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x8a53 Revision ID: 0x0007 Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2560 x 1600 Retina Framebuffer Depth: 30-Bit Color (ARGB2101010) Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal Installed Packages: alabaster: 0.7.16 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 2.4.1 Babel: 2.14.0 beautifulsoup4: 4.12.3 blockdiag: 3.0.0 blosc2: 2.0.0 build: 1.2.1 certifi: 2023.11.17 cftime: 1.6.3 charset-normalizer: 3.3.2 ChimeraX-AddCharge: 1.5.16 ChimeraX-AddH: 2.2.6 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.4.3 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.12.5 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.1.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.56.1 ChimeraX-AtomicLibrary: 14.0.3 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.12.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.4 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.5 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.8.dev202404140648 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.3 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.3 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-Label: 1.1.9 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.1.6 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.2 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.1.3 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.7 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.14.1 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.15 ChimeraX-ModelPanel: 1.5 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.1 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.1 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.13.4 ChimeraX-PDB: 2.7.5 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.4.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.2 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.2 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.11.2 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.16.3 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.37.2 ChimeraX-uniprot: 2.3 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.4 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.3 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.2 contourpy: 1.2.1 cxservices: 1.2.2 cycler: 0.12.1 Cython: 3.0.10 debugpy: 1.8.1 decorator: 5.1.1 docutils: 0.20.1 executing: 2.0.1 filelock: 3.13.3 fonttools: 4.51.0 funcparserlib: 2.0.0a0 glfw: 2.7.0 grako: 3.16.5 h5py: 3.11.0 html2text: 2024.2.26 idna: 3.7 ihm: 0.43 imagecodecs: 2024.1.1 imagesize: 1.4.1 ipykernel: 6.29.2 ipython: 8.21.0 ipywidgets: 8.1.2 jedi: 0.19.1 Jinja2: 3.1.3 jupyter-client: 8.6.0 jupyter-core: 5.7.2 jupyterlab-widgets: 3.0.10 kiwisolver: 1.4.5 line-profiler: 4.1.2 lxml: 5.2.1 lz4: 4.3.3 MarkupSafe: 2.1.5 matplotlib: 3.8.4 matplotlib-inline: 0.1.6 msgpack: 1.0.8 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.0.1 nptyping: 2.5.0 numexpr: 2.10.0 numpy: 1.26.4 openvr: 1.26.701 packaging: 23.2 ParmEd: 4.2.2 parso: 0.8.4 pep517: 0.13.1 pexpect: 4.9.0 pillow: 10.3.0 pip: 24.0 pkginfo: 1.10.0 platformdirs: 4.2.0 prompt-toolkit: 3.0.43 psutil: 5.9.8 ptyprocess: 0.7.0 pure-eval: 0.2.2 py-cpuinfo: 9.0.0 pycollada: 0.8 pydicom: 2.3.0 pygments: 2.17.2 pynmrstar: 3.3.4 pynrrd: 1.0.0 PyOpenGL: 3.1.7 PyOpenGL-accelerate: 3.1.7 pyopenxr: 1.0.3302 pyparsing: 3.1.2 pyproject-hooks: 1.0.0 PyQt6-commercial: 6.6.1 PyQt6-Qt6: 6.6.3 PyQt6-sip: 13.6.0 PyQt6-WebEngine-commercial: 6.6.0 PyQt6-WebEngine-Qt6: 6.6.3 python-dateutil: 2.9.0.post0 pytz: 2024.1 pyzmq: 25.1.2 qtconsole: 5.5.1 QtPy: 2.4.1 RandomWords: 0.4.0 requests: 2.31.0 scipy: 1.13.0 setuptools: 69.2.0 setuptools-scm: 8.0.4 sfftk-rw: 0.8.1 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.5 sphinx: 7.2.6 sphinx-autodoc-typehints: 2.0.0 sphinxcontrib-applehelp: 1.0.8 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.6 sphinxcontrib-htmlhelp: 2.0.5 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.7 sphinxcontrib-serializinghtml: 1.1.10 stack-data: 0.6.3 superqt: 0.6.3 tables: 3.8.0 tcia-utils: 1.5.1 tifffile: 2024.1.30 tinyarray: 1.2.4 tornado: 6.4 traitlets: 5.14.2 typing-extensions: 4.11.0 tzdata: 2024.1 urllib3: 2.2.1 wcwidth: 0.2.13 webcolors: 1.13 wheel: 0.43.0 wheel-filename: 1.4.1 widgetsnbextension: 4.0.10 }}} " defect closed normal Window Toolkit duplicate all ChimeraX