![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 9 months ago
Last modified 9 months ago
#17134 closed defect
ChimeraX bug report submission — at Initial Version
| Reported by: | Owned by: | ||
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-15.3.2-arm64-arm-64bit
ChimeraX Version: 1.9 (2024-12-11 19:11:19 UTC)
Description
Last time you used ChimeraX it crashed.
This is a known crash that we are unable to fix. Here is information that may help you avoid this crash. The Qt window toolkit crashed due to a display configuration change, typically when waking from sleep or when an external display is disconnected or connected. This has only been seen on Mac computers. We hope a newer version of Qt will fix it. We update ChimeraX daily builds whenever a new Qt is released. You can check here https://www.cgl.ucsf.edu/chimerax/docs/troubleshoot.html#macdisplay to see if it has been fixed in a newer ChimeraX.
Fatal Python error: Segmentation fault
Current thread 0x00000002082f8840 (most recent call first):
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 330 in event_loop
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1054 in init
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1217 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, chimerax.surface._surface, chimerax.pdb_lib._load_libs, charset_normalizer.md, requests.packages.charset_normalizer.md, requests.packages.chardet.md, PIL._imaging, kiwisolver._cext, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, psutil._psutil_osx, psutil._psutil_posix, PIL._imagingmath, chimerax.graphics._graphics, chimerax.pdb._pdbio, chimerax.atomic._ribbons, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.dssp._dssp (total: 53)
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"captureTime" : "2025-03-19 16:18:49.5124 +0100",
"codeSigningMonitor" : 1,
"incident" : "442AEC30-C71E-4B8D-9713-7962AA24FADF",
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"procLaunch" : "2025-03-19 10:05:04.6060 +0100",
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"procExitAbsTime" : 445990291587,
"procName" : "ChimeraX",
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"bundleInfo" : {"CFBundleShortVersionString":"1.9.0","CFBundleVersion":"1.9.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
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"crashReporterKey" : "9575A0BD-1234-9581-1E01-974F4B4A7465",
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
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"instructionByteStream" : {"beforePC":"fyMD1f17v6n9AwCRcuD\/l78DAJH9e8Go\/w9f1sADX9YQKYDSARAA1A==","atPC":"AwEAVH8jA9X9e7+p\/QMAkWfg\/5e\/AwCR\/XvBqP8PX9bAA1\/WcAqA0g=="},
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"wakeTime" : 1,
"sleepWakeUUID" : "4DC6BF73-8AFD-467F-A640-B1CDCEDB4C6F",
"sip" : "enabled",
"vmRegionInfo" : "0x212ea5f763c8 is not in any region. Bytes after previous region: 36003200328649 Bytes before following region: 69068879600696\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n commpage (reserved) 1000000000-7000000000 [384.0G] ---\/--- SM=NUL reserved VM address space (unallocated)\n---> GAP OF 0x5f9000000000 BYTES\n MALLOC_NANO 600000000000-600020000000 [512.0M] rw-\/rwx SM=PRV ",
"exception" : {"codes":"0x0000000000000001, 0x0000212ea5f763c8","rawCodes":[1,36484236665800],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x0000212ea5f763c8"},
"termination" : {"flags":0,"code":11,"namespace":"SIGNAL","indicator":"Segmentation fault: 11","byProc":"ChimeraX","byPid":2976},
"vmregioninfo" : "0x212ea5f763c8 is not in any region. Bytes after previous region: 36003200328649 Bytes before following region: 69068879600696\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n commpage (reserved) 1000000000-7000000000 [384.0G] ---\/--- SM=NUL reserved VM address space (unallocated)\n---> GAP OF 0x5f9000000000 BYTES\n MALLOC_NANO 600000000000-600020000000 [512.0M] rw-\/rwx SM=PRV ",
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"name" : "libqsvgicon.dylib"
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{
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},
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"name" : "nones_formathandler.cpython-311-darwin.so"
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{
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},
{
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}
===== Log before crash start =====
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "/Users/u0159610/SwitchLab Dropbox/brajabandhu
> pradhan/Heterotypic_Abeta_medin_manuscript/Data/Morphology_1_maps/Morpholgy_1_Processed_Job101.mrc"
Opened Morpholgy_1_Processed_Job101.mrc as #1, grid size 400,400,400, pixel
0.71, shown at level 0.0164, step 2, values float32
> volume #1 step 1
> volume #1 level 0.133
> set bgColor white
> volume #1 level 0.1089
> lighting soft
> save /Users/u0159610/Desktop/image18.png supersample 3
> color #1 #73fdffff models
> color #1 #7a81ffff models
> color #1 #0433ffff models
> color #1 #7a81ffff models
> color #1 #ff8ad8ff models
> color #1 #d783ffff models
> color #1 #7a81ffff models
> preset "overall look" "publication 1 (silhouettes)"
Using preset: Overall Look / Publication 1 (Silhouettes)
Preset expands to these ChimeraX commands:
set bg white
graphics silhouettes t
lighting depthCue f
> color #1 #945200ff models
> color #1 #009051ff models
> color #1 #8efa00ff models
> color #1 #00f900ff models
> color #1 #ff7e79ff models
> color #1 #ff85ffff models
> color #1 #7a81ffff models
> color #1 #ff7e79ff models
> color #1 #ff85ffff models
> color #1 #d783ffff models
> color #1 #ff7e79ff models
> color #1 #7a81ffff models
> color #1 #0433ffff models
> color #1 #7a81ffff models
> color #1 #6c72e2ff models
> color #1 #6e75e6ff models
> preset "overall look" "publication 2 (depth-cued)"
Using preset: Overall Look / Publication 2 (Depth-Cued)
Preset expands to these ChimeraX commands:
set bg white
graphics silhouettes f
lighting depthCue t
> color #1 #d0e6b1ff models
> color #1 #cce6d4ff models
> color #1 #ac82e6ff models
> color #1 #3d2e51ff models
> color #1 #00f900ff models
> color #1 #fffc79ff models
> color #1 #ff7e79ff models
> color #1 #ff2600ff models
> color #1 #941100ff models
> color #1 #ff7e79ff models
> color #1 #d783ffff models
> color #1 #7a81ffff models
> color #1 #0433ffff models
> color #1 #7a81ffff models
> color #1 #d783ffff models
> color #1 #7a81ffff models
> preset "overall look" "publication 1 (silhouettes)"
Using preset: Overall Look / Publication 1 (Silhouettes)
Preset expands to these ChimeraX commands:
set bg white
graphics silhouettes t
lighting depthCue f
> color #1 #d783ffff models
> color #1 #7a81ffff models
> ui tool show "Map Statistics"
> measure mapstats
Map Morpholgy_1_Processed_Job101.mrc #1, minimum -0.001785, maximum 2.237,
mean 0.003323, SD 0.04851, RMS 0.04862
> ui tool show Toolbar
> ui tool show "Scale Bar"
> set bgColor black
> set bgColor white
> scalebar
> scalebar 50
> scalebar ypos 0.9
> scalebar xpos 0.9
> scalebar xpos 0.1
> scalebar xpos 0.2
> scalebar ypos 0.1
> save /Users/u0159610/Desktop/PopulationA.png supersample 20
> transparentBackground true
> volume #1 level 0.04265
> volume #1 color #7a81ff28
> preset "overall look" "publication 2 (depth-cued)"
Using preset: Overall Look / Publication 2 (Depth-Cued)
Preset expands to these ChimeraX commands:
set bg white
graphics silhouettes f
lighting depthCue t
> ui tool show "Side View"
> open "/Users/u0159610/SwitchLab Dropbox/brajabandhu
> pradhan/Heterotypic_Abeta_medin_manuscript/Data/Morphology_1_Models/morphology1_extradenisty_8layersMerged.pdb"
Chain information for morphology1_extradenisty_8layersMerged.pdb #3
---
Chain | Description
A B C D E F G H I J K L M N O P | No description available
q r s t u v w x | No description available
> style stick
Changed 3352 atom styles
> color #3 #7a81ffff
> preset "overall look" "publication 1 (silhouettes)"
Using preset: Overall Look / Publication 1 (Silhouettes)
Preset expands to these ChimeraX commands:
set bg white
graphics silhouettes t
lighting depthCue f
> preset "overall look" "publication 2 (depth-cued)"
Using preset: Overall Look / Publication 2 (Depth-Cued)
Preset expands to these ChimeraX commands:
set bg white
graphics silhouettes f
lighting depthCue t
> color #3 #4f54a5ff
> color #3 #6338a5ff
> color #3 #4765a5ff
> color #3 #5173bbff
> color #3 #89bb3aff
> color #3 #bb5b46ff
> preset "overall look" "publication 1 (silhouettes)"
Using preset: Overall Look / Publication 1 (Silhouettes)
Preset expands to these ChimeraX commands:
set bg white
graphics silhouettes t
lighting depthCue f
> preset "molecular surfaces" "atomic coloring (transparent)"
Using preset: Molecular Surfaces / Atomic Coloring (Transparent)
Changed 0 atom styles
Preset expands to these ChimeraX commands:
style (protein|nucleic|solvent) & @@draw_mode=0 stick
surface
color fromatoms targ s trans 70
> preset "molecular surfaces" "chain id coloring (opaque)"
Using preset: Molecular Surfaces / Chain ID Coloring (Opaque)
Changed 0 atom styles
Preset expands to these ChimeraX commands:
style (protein|nucleic|solvent) & @@draw_mode=0 stick
surface
color bychain targ s trans 0
> preset "overall look" "publication 2 (depth-cued)"
Using preset: Overall Look / Publication 2 (Depth-Cued)
Preset expands to these ChimeraX commands:
set bg white
graphics silhouettes f
lighting depthCue t
> preset "overall look" "publication 2 (depth-cued)"
Using preset: Overall Look / Publication 2 (Depth-Cued)
Preset expands to these ChimeraX commands:
set bg white
graphics silhouettes f
lighting depthCue t
> preset "initial styles" "original look"
Using preset: Initial Styles / Original Look
Preset implemented in Python; no expansion to individual ChimeraX commands
available.
> preset "initial styles" sticks
Using preset: Initial Styles / Sticks
Preset implemented in Python; no expansion to individual ChimeraX commands
available.
> preset "initial styles" cartoon
Using preset: Initial Styles / Cartoon
Preset implemented in Python; no expansion to individual ChimeraX commands
available.
Computing secondary structure
> preset "initial styles" cartoon
Using preset: Initial Styles / Cartoon
Preset implemented in Python; no expansion to individual ChimeraX commands
available.
> preset "initial styles" sticks
Using preset: Initial Styles / Sticks
Preset implemented in Python; no expansion to individual ChimeraX commands
available.
> scalebar off
> scalebar 50 xpos 0.2
> scalebar 1
> scalebar 10
> scalebar off
> volume #1 level 0.291
> color #1#!3 byelement
> hide #!1 models
> select /E
185 atoms, 186 bonds, 26 residues, 1 model selected
> hide sel atoms
> select /M
185 atoms, 186 bonds, 26 residues, 1 model selected
> hide sel atoms
> select /M/K
370 atoms, 372 bonds, 52 residues, 1 model selected
> hide sel atoms
> select /M/K/s/C
604 atoms, 606 bonds, 88 residues, 1 model selected
> hide sel atoms
> show #!1 models
> stereo
Unknown command: stereo
> mono
Unknown command: mono
> camera stereo
Could not switch graphics mode. Graphics driver did not create OpenGL context.
> camera mono
> camera ortho
> volume #1 level 0.2868
> volume #1 level 0.1668
> hide #!1 models
> hide /t
> show #!1 models
> lighting soft
> lighting simple
> lighting soft
> lighting full
> lighting simple
> lighting soft
> lighting simple
> lighting full
> hide /tu
> hide /t/u
> save /Users/u0159610/Desktop/PopulationA_topview.png supersample 20
> transparentBackground true
> volume #1 level 0.4731
Unsupported scale factor (0.000000) detected on Display1
> volume #1 level 0.2399
> hide #!1 models
> hide /r
> hide /r/q
> show #!1 models
> volume #1 level 0.07913
> hide #!3 models
> open "/Users/u0159610/SwitchLab Dropbox/brajabandhu
> pradhan/Heterotypic_Abeta_medin_manuscript/Data/Morphology_1_Models/morphology1UNit_corrrectedt-0.pdb"
Chain information for morphology1UNit_corrrectedt-0.pdb #5
---
Chain | Description
M | No description available
Computing secondary structure
> dssp #5
Computing secondary structure
> style #5 stick
Changed 185 atom styles
> style #5 stick
Changed 185 atom styles
> select add #5
789 atoms, 792 bonds, 114 residues, 6 models selected
> style sel & #5 stick
Changed 185 atom styles
> style sel & #5 stick
Changed 185 atom styles
> show sel & #5 atoms
> select subtract #5
604 atoms, 606 bonds, 88 residues, 5 models selected
> color #5 #eb27fdff
> color #5 #aefd4dff
> color #5 #426ffdff
> select add #5
789 atoms, 792 bonds, 114 residues, 6 models selected
> color (#5 & sel) byelement
> select clear
> color #5 byatom
> ui tool show "Color Actions"
> color byelement
> color byhetero
> color light gray
> color white
> color magenta
> color purple
> color cornflower blue
> color yellow
> color red
> color byelement
> color byhetero
> color light sea green
> color medium blue
> color cornflower blue
> color byhetero
> color byelement
> color byhetero
> color bynucleotide
> color bychain
> color bypolymer
> color byhetero
> color byelement
> color byelement target a
> color byhetero target a
Cannot color background by het
> color byelement target a
> color byhetero target a
> color forest green target a
> color byelement target a
> color light sea green target a
> hide #5 cartoons
> show #5 cartoons
> hide #5 cartoons
> color byelement target a
> color magenta target a
> color byelement target a
> select add #5
185 atoms, 186 bonds, 26 residues, 1 model selected
> ui mousemode right "rotate selected models"
> view matrix models
> #5,-0.66404,-0.71791,-0.20895,375.27,-0.70605,0.69403,-0.14074,166.66,0.24606,0.054072,-0.96775,229.78
> view matrix models
> #5,0.70752,0.65113,0.27469,-88.788,0.66238,-0.74649,0.063393,144.79,0.24633,0.13709,-0.95944,216.68
> view matrix models
> #5,0.64818,0.71358,0.26583,-87.838,0.72173,-0.68701,0.084345,124.67,0.24282,0.13719,-0.96032,217.31
> view matrix models
> #5,0.68496,0.65314,0.32286,-92.475,0.67043,-0.73851,0.071643,141.32,0.28523,0.16738,-0.94373,204.47
> view matrix models
> #5,0.98614,0.019482,0.16477,-23.67,-0.040699,0.99114,0.12639,-10.348,-0.16085,-0.13135,0.9782,45.381
> ui mousemode right "translate selected models"
> view matrix models
> #5,0.98614,0.019482,0.16477,-34.026,-0.040699,0.99114,0.12639,-18.512,-0.16085,-0.13135,0.9782,46
> ui mousemode right "rotate selected models"
> view matrix models
> #5,-0.99592,0.030301,0.085001,265.29,-0.035085,-0.99785,-0.055357,291.14,0.083141,-0.058114,0.99484,-2.486
> view matrix models
> #5,-0.99724,0.030601,0.067692,267.84,-0.03645,-0.99555,-0.08693,295.4,0.06473,-0.089157,0.99391,4.7864
> ui mousemode right "translate selected models"
> view matrix models
> #5,-0.99724,0.030601,0.067692,269.92,-0.03645,-0.99555,-0.08693,297.85,0.06473,-0.089157,0.99391,4.9295
> ui tool show "Fit in Map"
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.3618, steps = 76
shifted from previous position = 1.06
rotated from previous position = 2.13 degrees
atoms outside contour = 67, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99817084 -0.00414635 0.06031350 276.34192556
-0.00191319 -0.99497910 -0.10006447 295.44684437
0.06042557 -0.09999683 0.99315123 6.73438554
Axis 0.03023637 -0.05009989 0.99828641
Axis point 137.98621669 147.96980980 0.00000000
Rotation angle (degrees) 179.93591497
Shift along axis 0.27656870
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.3622, steps = 48
shifted from previous position = 0.0342
rotated from previous position = 0.798 degrees
atoms outside contour = 68, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99887258 -0.00449413 0.04725787 278.31327033
-0.00048931 -0.99448096 -0.10491590 295.84789687
0.04746855 -0.10482074 0.99335760 9.26756209
Axis 0.02372096 -0.05252085 0.99833806
Axis point 138.89793022 148.30750866 0.00000000
Rotation angle (degrees) 179.88507927
Shift along axis 0.31583679
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.3623, steps = 44
shifted from previous position = 0.0148
rotated from previous position = 0.467 degrees
atoms outside contour = 70, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99920217 -0.00475924 0.03965251 279.46112815
0.00045526 -0.99416685 -0.10785191 296.07802227
0.03993451 -0.10774781 0.99337587 10.77846864
Axis 0.01992977 -0.05398903 0.99834262
Axis point 139.42933811 148.51321137 0.00000000
Rotation angle (degrees) 179.85036719
Shift along axis 0.34523350
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.3623, steps = 28
shifted from previous position = 0.0149
rotated from previous position = 0.337 degrees
atoms outside contour = 69, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99940475 -0.00486705 0.03415265 280.27364761
0.00108414 -0.99393976 -0.10992060 296.24355310
0.03448066 -0.10981815 0.99335343 11.86535807
Axis 0.01718691 -0.05502593 0.99833700
Axis point 139.81356439 148.65795754 0.00000000
Rotation angle (degrees) 179.82922688
Shift along axis 0.36158754
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.3624, steps = 36
shifted from previous position = 0.0109
rotated from previous position = 0.323 degrees
atoms outside contour = 70, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99957000 -0.00511440 0.02887224 281.06889656
0.00185240 -0.99371818 -0.11189605 296.37901413
0.02926315 -0.11179446 0.99330038 12.91315605
Axis 0.01455827 -0.05601638 0.99832371
Axis point 140.18130529 148.79737585 0.00000000
Rotation angle (degrees) 179.80008040
Shift along axis 0.38130771
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.3626, steps = 28
shifted from previous position = 0.0146
rotated from previous position = 0.25 degrees
atoms outside contour = 69, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99967693 -0.00568081 0.02477304 281.74656665
0.00283810 -0.99355559 -0.11331022 296.41880262
0.02525709 -0.11320331 0.99325076 13.70830081
Axis 0.01252873 -0.05672418 0.99831127
Axis point 140.47052401 148.89988871 0.00000000
Rotation angle (degrees) 179.75553759
Shift along axis 0.40096498
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.363, steps = 64
shifted from previous position = 0.017
rotated from previous position = 0.462 degrees
atoms outside contour = 70, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99983526 -0.00576789 0.01720810 282.83684043
0.00373135 -0.99322878 -0.11611475 296.63297249
0.01776132 -0.11603142 0.99308672 15.22130353
Axis 0.00875755 -0.05813723 0.99827019
Axis point 140.99817739 149.09671934 0.00000000
Rotation angle (degrees) 179.72739430
Shift along axis 0.42651126
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.3633, steps = 40
shifted from previous position = 0.00907
rotated from previous position = 0.274 degrees
atoms outside contour = 70, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99990260 -0.00570964 0.01273327 283.46139643
0.00417025 -0.99302839 -0.11780149 296.77563932
0.01331710 -0.11773692 0.99295551 16.12819871
Axis 0.00652413 -0.05898875 0.99823733
Axis point 141.31015008 149.21565770 0.00000000
Rotation angle (degrees) 179.71646104
Shift along axis 0.44268479
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.3636, steps = 40
shifted from previous position = 0.0141
rotated from previous position = 0.236 degrees
atoms outside contour = 70, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99994421 -0.00572449 0.00887361 284.00122492
0.00462606 -0.99285831 -0.11920968 296.87806748
0.00949265 -0.11916198 0.99282944 16.89910432
Axis 0.00459985 -0.05970026 0.99820575
Axis point 141.57614994 149.31314885 0.00000000
Rotation angle (degrees) 179.70294436
Shift along axis 0.45144859
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.3638, steps = 44
shifted from previous position = 0.0141
rotated from previous position = 0.326 degrees
atoms outside contour = 70, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99997763 -0.00568494 0.00351653 284.74356457
0.00521726 -0.99262556 -0.12110842 297.02277462
0.00417909 -0.12108737 0.99263305 17.96915754
Axis 0.00192748 -0.06066107 0.99815656
Axis point 141.94811919 149.44688576 0.00000000
Rotation angle (degrees) 179.68709660
Shift along axis 0.46715044
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.3641, steps = 44
shifted from previous position = 0.0187
rotated from previous position = 0.409 degrees
atoms outside contour = 72, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99997798 -0.00579347 -0.00322699 285.69790149
0.00614754 -0.99233272 -0.12344210 297.17260973
-0.00248709 -0.12345923 0.99234652 19.30994207
Axis -0.00143126 -0.06184420 0.99808479
Axis point 142.41747555 149.61263780 0.00000000
Rotation angle (degrees) 179.65725684
Shift along axis 0.48564722
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.3644, steps = 28
shifted from previous position = 0.0162
rotated from previous position = 0.378 degrees
atoms outside contour = 72, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99993826 -0.00585591 -0.00944049 286.56826312
0.00699596 -0.99205051 -0.12564557 297.31787551
-0.00862967 -0.12570386 0.99203027 20.56271371
Axis -0.00452660 -0.06296348 0.99800557
Axis point 142.85116043 149.76979923 0.00000000
Rotation angle (degrees) 179.63108253
Shift along axis 0.50435579
> view matrix models
> #5,-0.99994,-0.0058559,-0.0094405,286.72,0.006996,-0.99205,-0.12565,296.97,-0.0086297,-0.1257,0.99203,20.625
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.3647, steps = 56
shifted from previous position = 0.395
rotated from previous position = 0.707 degrees
atoms outside contour = 71, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99976082 -0.00600769 -0.02102748 288.17997639
0.00868891 -0.99149682 -0.12984042 297.58200208
-0.02006864 -0.12999208 0.99131190 22.93351981
Axis -0.01029653 -0.06510049 0.99782559
Axis point 143.65917506 150.07085492 0.00000000
Rotation angle (degrees) 179.57805220
Shift along axis 0.54366501
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.3649, steps = 44
shifted from previous position = 0.0227
rotated from previous position = 0.525 degrees
atoms outside contour = 71, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99954258 -0.00608102 -0.02962431 289.35263984
0.00996958 -0.99107389 -0.13294030 297.76879711
-0.02855147 -0.13317484 0.99068121 24.70174750
Axis -0.01457816 -0.06668535 0.99766755
Axis point 144.25649026 150.29322534 0.00000000
Rotation angle (degrees) 179.53910443
Shift along axis 0.56908860
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.3649, steps = 44
shifted from previous position = 0.021
rotated from previous position = 0.464 degrees
atoms outside contour = 71, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99928473 -0.00636215 -0.03727589 290.43078196
0.01136170 -0.99071362 -0.13548953 297.88144001
-0.03606773 -0.13581614 0.99007731 26.25679089
Axis -0.01838190 -0.06799660 0.99751620
Axis point 144.79397148 150.48231879 0.00000000
Rotation angle (degrees) 179.49097794
Shift along axis 0.59797956
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.3653, steps = 44
shifted from previous position = 0.0238
rotated from previous position = 0.461 degrees
atoms outside contour = 74, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99897917 -0.00617715 -0.04474814 291.38872704
0.01232341 -0.99029832 -0.13841005 298.08334499
-0.04345903 -0.13882021 0.98936355 27.85185412
Axis -0.02211111 -0.06949407 0.99733729
Axis point 145.30996371 150.68953206 0.00000000
Rotation angle (degrees) 179.46857517
Shift along axis 0.61973939
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.3653, steps = 40
shifted from previous position = 0.0178
rotated from previous position = 0.399 degrees
atoms outside contour = 75, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99866023 -0.00640638 -0.05134830 292.30243641
0.01357690 -0.98998189 -0.14054003 298.16168308
-0.04993354 -0.14104889 0.98874255 29.19824121
Axis -0.02539263 -0.07059795 0.99718160
Axis point 145.77384620 150.84876021 0.00000000
Rotation angle (degrees) 179.42589371
Shift along axis 0.64401714
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.3654, steps = 48
shifted from previous position = 0.0319
rotated from previous position = 0.759 degrees
atoms outside contour = 75, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99794244 -0.00641720 -0.06379380 293.93443163
0.01562347 -0.98932549 -0.14488253 298.38648591
-0.06218310 -0.14558111 0.98739019 31.80820550
Axis -0.03159492 -0.07284814 0.99684247
Axis point 146.64383686 151.17053433 0.00000000
Rotation angle (degrees) 179.36656837
Shift along axis 0.68403485
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.3652, steps = 44
shifted from previous position = 0.0399
rotated from previous position = 0.671 degrees
atoms outside contour = 74, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99718673 -0.00599380 -0.07471711 295.26816388
0.01709890 -0.98870582 -0.14889053 298.63972995
-0.07298082 -0.14974925 0.98602685 34.14472896
Axis -0.03705536 -0.07492466 0.99650047
Axis point 147.40062754 151.46191769 0.00000000
Rotation angle (degrees) 179.33610462
Shift along axis 0.70849096
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.3652, steps = 40
shifted from previous position = 0.0292
rotated from previous position = 0.606 degrees
atoms outside contour = 74, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99639938 -0.00600619 -0.08457033 296.52345482
0.01889609 -0.98812978 -0.15245472 298.80235244
-0.08265079 -0.15350384 0.98468543 36.26473975
Axis -0.04196787 -0.07678721 0.99616385
Axis point 148.08813574 151.72914188 0.00000000
Rotation angle (degrees) 179.28383626
Shift along axis 0.73696682
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.3697, steps = 296
shifted from previous position = 0.258
rotated from previous position = 7.35 degrees
atoms outside contour = 68, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.97926829 -0.00243104 -0.20255284 309.87947935
0.04295400 -0.97968095 -0.19590854 300.18754588
-0.19796090 -0.20054747 0.95947495 63.22545508
Axis -0.10117193 -0.10014704 0.98981554
Axis point 156.43183477 155.08753802 0.00000000
Rotation angle (degrees) 178.68632152
Shift along axis 1.16753918
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.3702, steps = 48
shifted from previous position = 0.0243
rotated from previous position = 1.41 degrees
atoms outside contour = 73, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.97437497 -0.00058800 -0.22492891 311.99174346
0.04765986 -0.97783036 -0.20390266 300.34820800
-0.21982242 -0.20939773 0.95280149 68.61961843
Axis -0.11254042 -0.10458215 0.98812814
Axis point 158.04721595 155.73368835 0.00000000
Rotation angle (degrees) 178.60105528
Shift along axis 1.28223077
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.3704, steps = 48
shifted from previous position = 0.0135
rotated from previous position = 0.935 degrees
atoms outside contour = 73, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.97084088 0.00056630 -0.23972402 313.35783320
0.05102028 -0.97659871 -0.20893026 300.38019834
-0.23423248 -0.21506883 0.94809310 72.19467589
Axis -0.12007715 -0.10742053 0.98693582
Axis point 159.12458836 156.14934480 0.00000000
Rotation angle (degrees) 178.53530745
Shift along axis 1.35739629
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.3705, steps = 44
shifted from previous position = 0.00517
rotated from previous position = 0.406 degrees
atoms outside contour = 73, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.96923509 0.00101666 -0.24613463 313.94530646
0.05258351 -0.97604987 -0.21109620 300.37443470
-0.24045428 -0.21754446 0.94596835 73.75666297
Axis -0.12334581 -0.10865658 0.98639726
Axis point 159.59288855 156.33088699 0.00000000
Rotation angle (degrees) 178.50217587
Shift along axis 1.39187491
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.3705, steps = 44
shifted from previous position = 0.00211
rotated from previous position = 0.208 degrees
atoms outside contour = 73, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.96839951 0.00127563 -0.24940068 314.23817225
0.05336611 -0.97576662 -0.21220636 300.37380032
-0.24362755 -0.21881008 0.94486387 74.55695925
Axis -0.12501406 -0.10929024 0.98611720
Axis point 159.83236302 156.42409759 0.00000000
Rotation angle (degrees) 178.48653296
Shift along axis 1.40978464
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.3704, steps = 40
shifted from previous position = 0.00112
rotated from previous position = 0.11 degrees
atoms outside contour = 73, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.96793189 0.00112734 -0.25121014 314.44367797
0.05400977 -0.97567118 -0.21248217 300.30337224
-0.24533803 -0.21923607 0.94432239 74.94380122
Axis -0.12592481 -0.10948403 0.98597981
Axis point 159.96420227 156.45229833 0.00000000
Rotation angle (degrees) 178.46330340
Shift along axis 1.41838829
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.3706, steps = 44
shifted from previous position = 0.0156
rotated from previous position = 0.114 degrees
atoms outside contour = 73, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.96751181 0.00151967 -0.25282113 314.56163506
0.05424250 -0.97544877 -0.21344184 300.37767079
-0.24693842 -0.22022116 0.94367581 75.40459126
Axis -0.12676017 -0.10999541 0.98581584
Axis point 160.09033558 156.53034432 0.00000000
Rotation angle (degrees) 178.46768771
Shift along axis 1.42098974
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.3704, steps = 64
shifted from previous position = 0.0165
rotated from previous position = 0.206 degrees
atoms outside contour = 72, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.96663295 0.00151945 -0.25616083 314.88294648
0.05523260 -0.97522546 -0.21420700 300.30082916
-0.25014004 -0.22120798 0.94260117 76.16975493
Axis -0.12845575 -0.11047111 0.98554313
Axis point 160.32811906 156.59774706 0.00000000
Rotation angle (degrees) 178.43846612
Shift along axis 1.44548939
> ui mousemode right "translate selected models"
> view matrix models
> #5,-0.96663,0.0015194,-0.25616,314.29,0.055233,-0.97523,-0.21421,299.77,-0.25014,-0.22121,0.9426,77.827
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.3705, steps = 56
shifted from previous position = 1.84
rotated from previous position = 0.024 degrees
atoms outside contour = 73, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.96661514 0.00184694 -0.25622589 314.84048911
0.05500132 -0.97516922 -0.21452233 300.37100909
-0.25025980 -0.22145329 0.94251178 76.23503637
Axis -0.12850510 -0.11061546 0.98552050
Axis point 160.33420863 156.61931816 0.00000000
Rotation angle (degrees) 178.45467909
Shift along axis 1.44690585
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.3706, steps = 48
shifted from previous position = 0.0138
rotated from previous position = 0.0977 degrees
atoms outside contour = 73, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.96702785 0.00169592 -0.25466489 314.71851772
0.05466736 -0.97528502 -0.21408078 300.37916147
-0.24873392 -0.22094393 0.94303510 75.86207595
Axis -0.12770452 -0.11035919 0.98565329
Axis point 160.22502140 156.58317649 0.00000000
Rotation angle (degrees) 178.46020635
Shift along axis 1.43312750
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.3705, steps = 44
shifted from previous position = 0.0121
rotated from previous position = 0.1 degrees
atoms outside contour = 73, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.96659308 0.00157000 -0.25631093 314.89139424
0.05524522 -0.97520151 -0.21431275 300.31049106
-0.25029128 -0.22131317 0.94253633 76.21587411
Axis -0.12853431 -0.11052644 0.98552668
Axis point 160.33980008 156.60596699 0.00000000
Rotation angle (degrees) 178.43954330
Shift along axis 1.44617822
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.3704, steps = 40
shifted from previous position = 0.00409
rotated from previous position = 0.0745 degrees
atoms outside contour = 72, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.96689688 0.00135655 -0.25516374 314.80376298
0.05507112 -0.97530918 -0.21386713 300.28971974
-0.24915366 -0.22083962 0.94294872 75.92550926
Axis -0.12794106 -0.11028155 0.98563130
Axis point 160.25274196 156.56993340 0.00000000
Rotation angle (degrees) 178.43856479
Shift along axis 1.44181595
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.3706, steps = 44
shifted from previous position = 0.0191
rotated from previous position = 0.104 degrees
atoms outside contour = 73, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.96734122 0.00158352 -0.25347268 314.61767440
0.05437948 -0.97540108 -0.21362484 300.37529552
-0.24757581 -0.22043183 0.94345959 75.55754917
Axis -0.12709424 -0.11010144 0.98576099
Axis point 160.13821953 156.54557512 0.00000000
Rotation angle (degrees) 178.46547614
Shift along axis 1.42383730
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.3705, steps = 44
shifted from previous position = 0.0029
rotated from previous position = 0.157 degrees
atoms outside contour = 73, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.96669097 0.00173104 -0.25594046 314.84174467
0.05502870 -0.97518583 -0.21443978 300.36256124
-0.24996071 -0.22138107 0.94260811 76.16366265
Axis -0.12835373 -0.11057356 0.98554493
Axis point 160.31883278 156.61506927 0.00000000
Rotation angle (degrees) 178.45055104
Shift along axis 1.43944032
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.3705, steps = 48
shifted from previous position = 0.0173
rotated from previous position = 0.0769 degrees
atoms outside contour = 73, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.96636649 0.00186768 -0.25716193 314.92825014
0.05527907 -0.97509016 -0.21481011 300.35875008
-0.25115726 -0.22180096 0.94219124 76.46165103
Axis -0.12898117 -0.11078603 0.98543915
Axis point 160.40153501 156.64427558 0.00000000
Rotation angle (degrees) 178.44707689
Shift along axis 1.45293574
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.3705, steps = 44
shifted from previous position = 0.0194
rotated from previous position = 0.144 degrees
atoms outside contour = 73, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.96697072 0.00169509 -0.25488174 314.74237581
0.05472777 -0.97527471 -0.21411231 300.37457299
-0.24894265 -0.22098944 0.94296935 75.90651326
Axis -0.12781470 -0.11038064 0.98563660
Axis point 160.24174817 156.58698661 0.00000000
Rotation angle (degrees) 178.45839961
Shift along axis 1.43199566
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.3705, steps = 44
shifted from previous position = 0.00227
rotated from previous position = 0.115 degrees
atoms outside contour = 73, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.96649094 0.00182012 -0.25669416 314.90401932
0.05518500 -0.97512111 -0.21469375 300.36561088
-0.25069866 -0.22166524 0.94234531 76.34801812
Axis -0.12874096 -0.11071764 0.98547824
Axis point 160.37440578 156.63626102 0.00000000
Rotation angle (degrees) 178.44849135
Shift along axis 1.44249408
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.3704, steps = 48
shifted from previous position = 0.0174
rotated from previous position = 0.0526 degrees
atoms outside contour = 72, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.96626650 0.00153933 -0.25753957 315.01452756
0.05563662 -0.97512221 -0.21457215 300.27642339
-0.25146285 -0.22166251 0.94214232 76.49350262
Axis -0.12915678 -0.11069245 0.98542666
Axis point 160.42761041 156.62982129 0.00000000
Rotation angle (degrees) 178.42710974
Shift along axis 1.45414125
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.3704, steps = 48
shifted from previous position = 0.0017
rotated from previous position = 0.118 degrees
atoms outside contour = 72, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.96676412 0.00144884 -0.25566577 314.84087465
0.05513348 -0.97527514 -0.21400624 300.29307236
-0.24965453 -0.22098929 0.94278116 76.04365924
Axis -0.12820100 -0.11035955 0.98558880
Axis point 160.29015882 156.58064796 0.00000000
Rotation angle (degrees) 178.43936748
Shift along axis 1.44465768
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.3706, steps = 44
shifted from previous position = 0.0147
rotated from previous position = 0.0588 degrees
atoms outside contour = 73, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.96702123 0.00163801 -0.25469041 314.72808524
0.05473179 -0.97528142 -0.21408072 300.36842439
-0.24874549 -0.22096027 0.94302822 75.86723771
Axis -0.12771426 -0.11036361 0.98565153
Axis point 160.22585572 156.58330762 0.00000000
Rotation angle (degrees) 178.45664660
Shift along axis 1.43365064
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.3705, steps = 44
shifted from previous position = 0.000503
rotated from previous position = 0.113 degrees
atoms outside contour = 73, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.96652946 0.00149906 -0.25655117 314.93488683
0.05538429 -0.97518487 -0.21435254 300.29659492
-0.25050614 -0.22138695 0.94246192 76.26511661
Axis -0.12865244 -0.11055754 0.98550778
Axis point 160.36131646 156.61196989 0.00000000
Rotation angle (degrees) 178.43340617
Shift along axis 1.44267278
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.3705, steps = 44
shifted from previous position = 0.00474
rotated from previous position = 0.135 degrees
atoms outside contour = 73, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.96600350 0.00195505 -0.25852148 315.06885311
0.05566668 -0.97494247 -0.21537960 300.36613384
-0.25246464 -0.22244848 0.94168904 76.81151021
Axis -0.12967492 -0.11110944 0.98531168
Axis point 160.51021131 156.69452679 0.00000000
Rotation angle (degrees) 178.43814337
Shift along axis 1.45323410
> view matrix models
> #5,-0.966,0.001955,-0.25852,322.92,0.055667,-0.97494,-0.21538,292.09,-0.25246,-0.22245,0.94169,78.769
> view matrix models
> #5,-0.966,0.001955,-0.25852,317,0.055667,-0.97494,-0.21538,298.79,-0.25246,-0.22245,0.94169,75.036
> view matrix models
> #5,-0.966,0.001955,-0.25852,316.62,0.055667,-0.97494,-0.21538,298.71,-0.25246,-0.22245,0.94169,77.28
> ui mousemode right "rotate selected models"
> view matrix models
> #5,-0.86753,0.4757,-0.14526,218.55,-0.45622,-0.87737,-0.14858,350.28,-0.19812,-0.062631,0.97817,41.347
> view matrix models
> #5,-0.80856,0.4521,-0.37662,245.47,-0.33567,-0.88009,-0.33582,359.07,-0.48328,-0.14511,0.86335,110.82
> ui mousemode right "translate selected models"
> view matrix models
> #5,-0.80856,0.4521,-0.37662,245.59,-0.33567,-0.88009,-0.33582,359.1,-0.48328,-0.14511,0.86335,108.95
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.2571, steps = 216
shifted from previous position = 1.72
rotated from previous position = 21.1 degrees
atoms outside contour = 104, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.94996905 0.23138826 -0.20980521 273.48993718
-0.21683458 -0.97202973 -0.09022708 321.10513486
-0.22481439 -0.04021991 0.97357117 40.09326819
Axis 0.11081837 0.03326108 -0.99328394
Axis point 157.45241640 145.49744402 0.00000000
Rotation angle (degrees) 166.96026425
Shift along axis 1.16401328
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.2565, steps = 44
shifted from previous position = 0.0554
rotated from previous position = 0.756 degrees
atoms outside contour = 107, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.95317741 0.22756913 -0.19916092 273.00205922
-0.21482974 -0.97305933 -0.08368807 320.04807891
-0.21284021 -0.03698388 0.97638682 37.43520365
Axis 0.10493728 0.03073531 -0.99400378
Axis point 156.61505415 145.13671139 0.00000000
Rotation angle (degrees) 167.14210090
Shift along axis 1.27413790
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.2567, steps = 28
shifted from previous position = 0.0241
rotated from previous position = 0.257 degrees
atoms outside contour = 105, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.95208728 0.22884751 -0.20287576 273.18164670
-0.21553976 -0.97272435 -0.08573158 320.38992039
-0.21696165 -0.03789615 0.97544426 38.32404324
Axis 0.10697218 0.03149964 -0.99376291
Axis point 156.90357422 145.24695861 0.00000000
Rotation angle (degrees) 167.08012819
Shift along axis 1.22998813
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.2562, steps = 36
shifted from previous position = 0.0284
rotated from previous position = 0.448 degrees
atoms outside contour = 105, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.95393866 0.22667207 -0.19652165 272.86568097
-0.21440798 -0.97330690 -0.08187096 319.76827858
-0.20983374 -0.03596406 0.97707542 36.75347069
Axis 0.10347261 0.03000500 -0.99417962
Axis point 156.40575227 145.03316730 0.00000000
Rotation angle (degrees) 167.18339088
Shift along axis 1.28921897
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.2558, steps = 40
shifted from previous position = 0.0358
rotated from previous position = 0.296 degrees
atoms outside contour = 107, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.95528966 0.22447987 -0.19243287 272.79791173
-0.21279414 -0.97384470 -0.07965620 319.27846364
-0.20528095 -0.03514616 0.97807181 35.80848047
Axis 0.10122332 0.02921868 -0.99443457
Axis point 156.08523073 144.90779409 0.00000000
Rotation angle (degrees) 167.29915282
Shift along axis 1.33321629
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.2555, steps = 64
shifted from previous position = 0.0987
rotated from previous position = 0.459 degrees
atoms outside contour = 104, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.95760025 0.21796767 -0.18839268 273.46213639
-0.20666481 -0.97530297 -0.07793417 318.28442880
-0.20072708 -0.03569565 0.97899665 35.05625443
Axis 0.09894099 0.02889251 -0.99467377
Axis point 155.74715045 144.81677610 0.00000000
Rotation angle (degrees) 167.67520752
Shift along axis 1.38311155
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.5703, steps = 228
shifted from previous position = 1.41
rotated from previous position = 15.6 degrees
atoms outside contour = 30, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99960232 0.00579498 -0.02759633 287.22534423
-0.00533825 -0.99984803 -0.01659506 285.01519335
-0.02768831 -0.01644115 0.99948138 4.03874104
Axis 0.01382304 0.00826035 -0.99987034
Axis point 144.03731180 142.12449844 0.00000000
Rotation angle (degrees) 179.68101337
Shift along axis 2.28643620
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.5708, steps = 44
shifted from previous position = 0.00378
rotated from previous position = 0.705 degrees
atoms outside contour = 29, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99985236 0.00566407 -0.01622108 285.69728715
-0.00547085 -0.99991384 -0.01193086 284.39889052
-0.01628726 -0.01184036 0.99979724 1.65930376
Axis 0.00812753 0.00594334 -0.99994931
Axis point 143.25125548 141.80670763 0.00000000
Rotation angle (degrees) 179.68099026
Shift along axis 2.35307308
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.571, steps = 40
shifted from previous position = 0.00329
rotated from previous position = 0.294 degrees
atoms outside contour = 29, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99991859 0.00562897 -0.01144864 285.04682605
-0.00551427 -0.99993453 -0.01002462 284.14411267
-0.01150432 -0.00996068 0.99988420 0.67758600
Axis 0.00573841 0.00499671 -0.99997105
Axis point 142.92115241 141.67669902 0.00000000
Rotation angle (degrees) 179.68075879
Shift along axis 2.37793502
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.5712, steps = 44
shifted from previous position = 0.0151
rotated from previous position = 0.129 degrees
atoms outside contour = 29, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99994129 0.00560636 -0.00926957 284.75373268
-0.00551854 -0.99993991 -0.00947062 284.07171824
-0.00932211 -0.00941891 0.99991218 0.26156561
Axis 0.00464802 0.00472273 -0.99997805
Axis point 142.77251278 141.64048952 0.00000000
Rotation angle (degrees) 179.68128625
Shift along axis 2.40357442
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.5712, steps = 40
shifted from previous position = 0.0145
rotated from previous position = 0.101 degrees
atoms outside contour = 29, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99995384 0.00560190 -0.00780240 284.54865371
-0.00553562 -0.99994863 -0.00848847 283.93659570
-0.00784956 -0.00844489 0.99993352 -0.08433957
Axis 0.00391305 0.00423365 -0.99998338
Axis point 142.66945769 141.57197026 0.00000000
Rotation angle (degrees) 179.68092652
Shift along axis 2.39987750
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.5712, steps = 44
shifted from previous position = 0.00971
rotated from previous position = 0.0155 degrees
atoms outside contour = 29, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99995492 0.00561601 -0.00765294 284.52826546
-0.00554925 -0.99994662 -0.00871440 283.97148692
-0.00770147 -0.00867154 0.99993273 -0.08220898
Axis 0.00383866 0.00434680 -0.99998318
Axis point 142.66030391 141.58845700 0.00000000
Rotation angle (degrees) 179.68013163
Shift along axis 2.40878072
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.5712, steps = 28
shifted from previous position = 0.00946
rotated from previous position = 0.0531 degrees
atoms outside contour = 29, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99995968 0.00559685 -0.00701782 284.44115895
-0.00554037 -0.99995232 -0.00803934 283.87576135
-0.00706248 -0.00800014 0.99994305 -0.26554653
Axis 0.00352011 0.00401017 -0.99998576
Axis point 142.61531144 141.54136009 0.00000000
Rotation angle (degrees) 179.68093587
Shift along axis 2.40519654
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.5712, steps = 40
shifted from previous position = 0.00193
rotated from previous position = 0.0301 degrees
atoms outside contour = 29, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99995613 0.00562163 -0.00748801 284.50204925
-0.00555963 -0.99995031 -0.00827307 283.91015288
-0.00753415 -0.00823107 0.99993773 -0.16051426
Axis 0.00375559 0.00412634 -0.99998443
Axis point 142.64753401 141.55710592 0.00000000
Rotation angle (degrees) 179.67967381
Shift along axis 2.40049256
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.5712, steps = 40
shifted from previous position = 0.00142
rotated from previous position = 0.00709 degrees
atoms outside contour = 29, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99995506 0.00572922 -0.00754917 284.49466215
-0.00566672 -0.99994971 -0.00827247 283.92537630
-0.00759618 -0.00822932 0.99993728 -0.15024407
Axis 0.00378639 0.00412575 -0.99998432
Axis point 142.65149773 141.55711498 0.00000000
Rotation angle (degrees) 179.67352375
Shift along axis 2.39885310
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.5712, steps = 40
shifted from previous position = 0.00129
rotated from previous position = 0.0121 degrees
atoms outside contour = 29, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99995437 0.00562951 -0.00771466 284.53220455
-0.00556501 -0.99994959 -0.00835546 283.92222868
-0.00776131 -0.00831215 0.99993532 -0.11506126
Axis 0.00386905 0.00416721 -0.99998383
Axis point 142.66317835 141.56272134 0.00000000
Rotation angle (degrees) 179.67929371
Shift along axis 2.39909014
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.5712, steps = 40
shifted from previous position = 0.00109
rotated from previous position = 0.00585 degrees
atoms outside contour = 29, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99995430 0.00570808 -0.00766532 284.51381788
-0.00564431 -0.99994950 -0.00831359 283.92779120
-0.00771239 -0.00826995 0.99993605 -0.12737562
Axis 0.00384448 0.00414619 -0.99998401
Axis point 142.65957372 141.55988925 0.00000000
Rotation angle (degrees) 179.67477085
Shift along axis 2.39839820
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.5712, steps = 40
shifted from previous position = 0.00134
rotated from previous position = 0.0089 degrees
atoms outside contour = 29, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99995392 0.00562629 -0.00777525 284.54109303
-0.00556104 -0.99994936 -0.00838623 283.92593722
-0.00782204 -0.00834261 0.99993460 -0.10189014
Axis 0.00389938 0.00418252 -0.99998365
Axis point 142.66739656 141.56484559 0.00000000
Rotation angle (degrees) 179.67949969
Shift along axis 2.39894602
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.5712, steps = 40
shifted from previous position = 0.00195
rotated from previous position = 0.0124 degrees
atoms outside contour = 29, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99995438 0.00575618 -0.00761829 284.50045384
-0.00569278 -0.99994921 -0.00831507 283.93492310
-0.00766577 -0.00827132 0.99993640 -0.13342872
Axis 0.00382107 0.00414690 -0.99998410
Axis point 142.65631904 141.56002735 0.00000000
Rotation angle (degrees) 179.67200438
Shift along axis 2.39797182
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.5712, steps = 44
shifted from previous position = 0.0177
rotated from previous position = 0.0277 degrees
atoms outside contour = 29, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99995575 0.00559738 -0.00755706 284.51883735
-0.00553106 -0.99994626 -0.00876667 283.97702131
-0.00760573 -0.00872448 0.99993301 -0.09288750
Axis 0.00379075 0.00437310 -0.99998325
Axis point 142.65427166 141.59252282 0.00000000
Rotation angle (degrees) 179.68118687
Shift along axis 2.41328596
> save "/Users/u0159610/SwitchLab Dropbox/brajabandhu
> pradhan/Heterotypic_Abeta_medin_manuscript/Data/Morphology_1_Models/morphology1UNit_corrrectedt-1.pdb"
> models #5 relModel #1
> view matrix models
> #5,-0.99996,0.0055974,-0.0075571,284.69,-0.0055311,-0.99995,-0.0087667,283.88,-0.0076057,-0.0087245,0.99993,-4.4971
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.5936, steps = 64
shifted from previous position = 0.434
rotated from previous position = 0.863 degrees
atoms outside contour = 33, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99976112 0.02061090 -0.00726869 282.34345285
-0.02055503 -0.99975922 -0.00767805 285.94503407
-0.00742520 -0.00752681 0.99994410 -5.11978028
Axis 0.00367390 0.00380173 -0.99998602
Axis point 142.63377593 141.50986100 0.00000000
Rotation angle (degrees) 178.82058322
Shift along axis 7.24409600
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.5935, steps = 40
shifted from previous position = 0.00197
rotated from previous position = 0.0171 degrees
atoms outside contour = 33, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99975911 0.02063233 -0.00748113 282.37000761
-0.02057326 -0.99975722 -0.00788757 285.97664636
-0.00764206 -0.00773176 0.99994090 -5.05977219
Axis 0.00378124 0.00390536 -0.99998523
Axis point 142.64847130 141.52398377 0.00000000
Rotation angle (degrees) 178.81944578
Shift along axis 7.24424879
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.5936, steps = 44
shifted from previous position = 0.00385
rotated from previous position = 0.0128 degrees
atoms outside contour = 33, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99975909 0.02068746 -0.00733092 282.34074075
-0.02062836 -0.99975483 -0.00804498 286.00630859
-0.00749555 -0.00789182 0.99994076 -5.05407128
Axis 0.00370706 0.00398474 -0.99998519
Axis point 142.63812810 141.53488177 0.00000000
Rotation angle (degrees) 178.81628703
Shift along axis 7.24031063
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.5936, steps = 44
shifted from previous position = 0.00146
rotated from previous position = 0.0237 degrees
atoms outside contour = 32, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99975864 0.02060969 -0.00760520 282.39009498
-0.02055076 -0.99975880 -0.00774481 285.95344855
-0.00776298 -0.00758665 0.99994108 -5.06079659
Axis 0.00384250 0.00383338 -0.99998527
Axis point 142.65662749 141.51405743 0.00000000
Rotation angle (degrees) 178.82073910
Shift along axis 7.24197452
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.5935, steps = 40
shifted from previous position = 0.00235
rotated from previous position = 0.0109 degrees
atoms outside contour = 33, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99975834 0.02063162 -0.00758494 282.38442788
-0.02057139 -0.99975690 -0.00793212 285.98247919
-0.00774675 -0.00777417 0.99993976 -5.03803440
Axis 0.00383338 0.00392710 -0.99998494
Axis point 142.65552895 141.52690586 0.00000000
Rotation angle (degrees) 178.81951945
Shift along axis 7.24352773
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.5936, steps = 44
shifted from previous position = 0.00327
rotated from previous position = 0.0136 degrees
atoms outside contour = 33, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99975887 0.02067835 -0.00738546 282.34968745
-0.02061877 -0.99975497 -0.00805234 286.00596337
-0.00755016 -0.00789812 0.99994030 -5.04557665
Axis 0.00373435 0.00398816 -0.99998507
Axis point 142.64187792 141.53533225 0.00000000
Rotation angle (degrees) 178.81682284
Shift along axis 7.24053056
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.5936, steps = 44
shifted from previous position = 0.000663
rotated from previous position = 0.00544 degrees
atoms outside contour = 33, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99975680 0.02076388 -0.00742660 282.34269050
-0.02070396 -0.99975320 -0.00805318 286.01836395
-0.00759198 -0.00789747 0.99993998 -5.04017322
Axis 0.00375509 0.00398821 -0.99998500
Axis point 142.64450671 141.53555309 0.00000000
Rotation angle (degrees) 178.81193082
Shift along axis 7.24102120
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.5936, steps = 44
shifted from previous position = 0.00107
rotated from previous position = 0.0165 degrees
atoms outside contour = 33, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99976004 0.02060201 -0.00744095 282.36857824
-0.02054380 -0.99975840 -0.00781443 285.96227087
-0.00760015 -0.00765969 0.99994177 -5.07483141
Axis 0.00376072 0.00386905 -0.99998544
Axis point 142.64556970 141.51897632 0.00000000
Rotation angle (degrees) 178.82115886
Shift along axis 7.24306818
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.5935, steps = 40
shifted from previous position = 0.00178
rotated from previous position = 0.00919 degrees
atoms outside contour = 33, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99975855 0.02063174 -0.00755748 282.38065701
-0.02057182 -0.99975699 -0.00792085 285.98103425
-0.00771907 -0.00776347 0.99994006 -5.04385825
Axis 0.00381959 0.00392161 -0.99998502
Axis point 142.65367952 141.52618532 0.00000000
Rotation angle (degrees) 178.81950362
Shift along axis 7.24386690
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.5936, steps = 44
shifted from previous position = 0.00418
rotated from previous position = 0.0151 degrees
atoms outside contour = 33, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99975894 0.02069266 -0.00733550 282.34056587
-0.02063349 -0.99975468 -0.00805036 286.00780087
-0.00750029 -0.00789706 0.99994068 -5.05235149
Axis 0.00370939 0.00398740 -0.99998517
Axis point 142.63841501 141.53526092 0.00000000
Rotation angle (degrees) 178.81599103
Shift along axis 7.24001323
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.5936, steps = 44
shifted from previous position = 0.00183
rotated from previous position = 0.0232 degrees
atoms outside contour = 32, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99975850 0.02061216 -0.00761728 282.39140060
-0.02055295 -0.99975856 -0.00776932 285.95718657
-0.00777559 -0.00761089 0.99994080 -5.05551640
Axis 0.00384867 0.00384557 -0.99998520
Axis point 142.65746015 141.51573481 0.00000000
Rotation angle (degrees) 178.82060572
Shift along axis 7.24194251
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.5935, steps = 40
shifted from previous position = 0.00238
rotated from previous position = 0.00884 degrees
atoms outside contour = 33, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99975807 0.02064532 -0.00758328 282.38225121
-0.02058523 -0.99975675 -0.00791628 285.98221881
-0.00774487 -0.00775826 0.99993990 -5.04079172
Axis 0.00383249 0.00391917 -0.99998498
Axis point 142.65542125 141.52582909 0.00000000
Rotation angle (degrees) 178.81873026
Shift along axis 7.24375606
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.5936, steps = 44
shifted from previous position = 0.00575
rotated from previous position = 0.0155 degrees
atoms outside contour = 32, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99975957 0.02061765 -0.00746093 282.36840552
-0.02056033 -0.99975912 -0.00767690 285.94489643
-0.00761741 -0.00752166 0.99994269 -5.08859963
Axis 0.00377003 0.00380015 -0.99998567
Axis point 142.64649617 141.50930416 0.00000000
Rotation angle (degrees) 178.82023758
Shift along axis 7.23969772
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.5933, steps = 44
shifted from previous position = 0.0164
rotated from previous position = 0.0261 degrees
atoms outside contour = 33, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99975958 0.02061138 -0.00747682 282.37441043
-0.02055047 -0.99975573 -0.00813175 286.00919359
-0.00764260 -0.00797614 0.99993897 -5.03421430
Axis 0.00378030 0.00402752 -0.99998474
Axis point 142.64932338 141.54152033 0.00000000
Rotation angle (degrees) 178.82069872
Shift along axis 7.25350475
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.5936, steps = 44
shifted from previous position = 0.015
rotated from previous position = 0.0602 degrees
atoms outside contour = 33, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99976412 0.02071402 -0.00652456 282.22526022
-0.02066360 -0.99975681 -0.00770116 285.96432480
-0.00668250 -0.00756452 0.99994905 -5.22109449
Axis 0.00330215 0.00381693 -0.99998726
Axis point 142.58312804 141.51240201 0.00000000
Rotation angle (degrees) 178.81451874
Shift along axis 7.24448437
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.5936, steps = 44
shifted from previous position = 0.00188
rotated from previous position = 0.0438 degrees
atoms outside contour = 33, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99976109 0.02060762 -0.00728179 282.34560024
-0.02055151 -0.99975916 -0.00769583 285.94685471
-0.00743863 -0.00754434 0.99994386 -5.11451395
Axis 0.00368053 0.00381056 -0.99998597
Axis point 142.63460828 141.51098798 0.00000000
Rotation angle (degrees) 178.82077813
Shift along axis 7.24324115
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.5935, steps = 40
shifted from previous position = 0.0042
rotated from previous position = 0.0131 degrees
atoms outside contour = 33, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99975926 0.02062999 -0.00746738 282.36881217
-0.02057147 -0.99975773 -0.00782775 285.96833546
-0.00762706 -0.00767225 0.99994147 -5.07211835
Axis 0.00377406 0.00387552 -0.99998537
Axis point 142.64767859 141.52003208 0.00000000
Rotation angle (degrees) 178.81956433
Shift along axis 7.24599616
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.5936, steps = 40
shifted from previous position = 0.00432
rotated from previous position = 0.0206 degrees
atoms outside contour = 33, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99976179 0.02061372 -0.00716852 282.32900860
-0.02055895 -0.99975952 -0.00762953 285.93869609
-0.00732408 -0.00748034 0.99994519 -5.14064005
Axis 0.00362357 0.00377798 -0.99998630
Axis point 142.62685351 141.50654851 0.00000000
Rotation angle (degrees) 178.82039022
Shift along axis 7.24387850
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.5935, steps = 40
shifted from previous position = 0.00431
rotated from previous position = 0.0217 degrees
atoms outside contour = 33, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99975953 0.02062329 -0.00745078 282.36742700
-0.02056449 -0.99975744 -0.00788231 285.97502879
-0.00761153 -0.00772720 0.99994117 -5.06634272
Axis 0.00376602 0.00390291 -0.99998529
Axis point 142.64656199 141.52380997 0.00000000
Rotation angle (degrees) 178.81995609
Shift along axis 7.24580297
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.5936, steps = 44
shifted from previous position = 0.00675
rotated from previous position = 0.0204 degrees
atoms outside contour = 32, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99976145 0.02061944 -0.00719953 282.33198747
-0.02056444 -0.99975940 -0.00762935 285.93858901
-0.00735511 -0.00747948 0.99994497 -5.13392742
Axis 0.00363908 0.00377772 -0.99998624
Axis point 142.62871547 141.50609789 0.00000000
Rotation angle (degrees) 178.82006915
Shift along axis 7.24148163
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.5935, steps = 40
shifted from previous position = 0.00794
rotated from previous position = 0.0205 degrees
atoms outside contour = 33, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99975987 0.02059612 -0.00747989 282.37556132
-0.02053734 -0.99975825 -0.00785027 285.96715998
-0.00763977 -0.00769477 0.99994120 -5.06805621
Axis 0.00378036 0.00388678 -0.99998530
Axis point 142.64860735 141.52178966 0.00000000
Rotation angle (degrees) 178.82151267
Shift along axis 7.24695447
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.5933, steps = 44
shifted from previous position = 0.00553
rotated from previous position = 0.0146 degrees
atoms outside contour = 33, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99975976 0.02061798 -0.00743351 282.36695581
-0.02055766 -0.99975584 -0.00810050 286.00547530
-0.00759871 -0.00794574 0.99993955 -5.04270680
Axis 0.00375850 0.00401210 -0.99998489
Axis point 142.64610926 141.53923395 0.00000000
Rotation angle (degrees) 178.82030369
Shift along axis 7.25138940
> fitmap #5 inMap #1
Fit molecule morphology1UNit_corrrectedt-0.pdb (#5) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 185 atoms
average map value = 0.5932, steps = 44
shifted from previous position = 0.00206
rotated from previous position = 0.0437 degrees
atoms outside contour = 33, contour level = 0.07913
Position of morphology1UNit_corrrectedt-0.pdb (#5) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99976456 0.02056685 -0.00691155 282.30255447
-0.02051459 -0.99976106 -0.00754585 285.92256598
-0.00706510 -0.00740229 0.99994763 -5.20287423
Axis 0.00349456 0.00373754 -0.99998691
Axis point 142.61050414 141.50182478 0.00000000
Rotation angle (degrees) 178.82300522
Shift along axis 7.25797648
Opened morphology1UNit_corrrectedt-0.pdb map 5 as #6, grid size 37,59,22,
pixel 1.67, shown at level 0.0479, step 1, values float32
Opened morphology1UNit_corrrectedt-0.pdb map 5 as #7, grid size 37,59,22,
pixel 1.67, shown at level 0.0479, step 1, values float32
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7669, correlation about mean = 0.745, overlap = 66.36
steps = 60, shift = 0.0605, angle = 1.26 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#7) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99977468 0.01855580 0.01030571 280.25155121
-0.01849460 -0.99981094 0.00600062 283.71904120
0.01041511 0.00580867 0.99992888 -9.69173336
Axis -0.00518076 -0.00295255 -0.99998222
Axis point 141.46513019 140.57556421 0.00000000
Rotation angle (degrees) 178.93850450
Shift along axis 7.40194940
Average map value = 0.5884 for 185 atoms, 31 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7662, correlation about mean = 0.7437, overlap = 66.36
steps = 44, shift = 0.00196, angle = 0.108 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99975700 0.01856621 0.01188178 280.02636472
-0.01848338 -0.99980435 0.00704190 283.57219333
0.01201019 0.00682057 0.99990460 -10.06846286
Axis -0.00597367 -0.00346592 -0.99997615
Axis point 141.35682936 140.50630940 0.00000000
Rotation angle (degrees) 178.93852145
Shift along axis 7.41259933
Average map value = 0.5879 for 185 atoms, 32 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.767, correlation about mean = 0.745, overlap = 66.47
steps = 48, shift = 0.0138, angle = 0.0244 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99975391 0.01855593 0.01215471 279.98988992
-0.01847527 -0.99980676 0.00671456 283.61759934
0.01227696 0.00648835 0.99990357 -10.07275602
Axis -0.00610861 -0.00330101 -0.99997589
Axis point 141.33883784 140.52899638 0.00000000
Rotation angle (degrees) 178.93904802
Shift along axis 7.42593902
Average map value = 0.5876 for 185 atoms, 30 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.766, correlation about mean = 0.7435, overlap = 66.38
steps = 40, shift = 0.0145, angle = 0.183 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99971585 0.01857802 0.01493406 279.59100770
-0.01845592 -0.99979544 0.00827205 283.39717921
0.01508468 0.00799408 0.99985425 -10.68141846
Axis -0.00750562 -0.00406695 -0.99996356
Axis point 141.14785289 140.42555277 0.00000000
Rotation angle (degrees) 178.93895650
Shift along axis 7.42996183
Average map value = 0.5877 for 185 atoms, 31 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.767, correlation about mean = 0.7449, overlap = 66.46
steps = 48, shift = 0.0128, angle = 0.154 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99974857 0.01853545 0.01261635 279.92718585
-0.01844918 -0.99980584 0.00691889 283.58547488
0.01274214 0.00668439 0.99989646 -10.16666574
Axis -0.00634035 -0.00340112 -0.99997412
Axis point 141.30715842 140.51550633 0.00000000
Rotation angle (degrees) 178.94038074
Shift along axis 7.42705691
Average map value = 0.5876 for 185 atoms, 30 outside contour
> save "/Users/u0159610/SwitchLab Dropbox/brajabandhu
> pradhan/Heterotypic_Abeta_medin_manuscript/Data/Morphology_1_Models/morphology1UNit_corrrectedt-11.pdb"
> models #5 relModel #1
> view matrix models
> #5,-0.99975,0.018535,0.012616,280.43,-0.018449,-0.99981,0.0069189,283.52,0.012742,0.0066844,0.9999,-14.716
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7679, correlation about mean = 0.7476, overlap = 64.68
steps = 40, shift = 0.552, angle = 0.881 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99933382 0.03375896 0.01386368 277.56282940
-0.03368616 -0.99941758 0.00545078 285.90354156
0.01403962 0.00498014 0.99988903 -15.01738265
Axis -0.00697801 -0.00260850 -0.99997225
Axis point 141.24525267 140.62980394 0.00000000
Rotation angle (degrees) 178.06741954
Shift along axis 12.33434822
Average map value = 0.5706 for 185 atoms, 31 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7691, correlation about mean = 0.7495, overlap = 64.76
steps = 28, shift = 0.0168, angle = 0.0539 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99931859 0.03381827 0.01478610 277.42162881
-0.03374343 -0.99941656 0.00528114 285.93401738
0.01495607 0.00477860 0.99987672 -15.10377252
Axis -0.00743791 -0.00251569 -0.99996917
Axis point 141.18285983 140.64153555 0.00000000
Rotation angle (degrees) 178.06407200
Shift along axis 12.32054976
Average map value = 0.5721 for 185 atoms, 31 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7678, correlation about mean = 0.7474, overlap = 64.69
steps = 44, shift = 0.0176, angle = 0.0312 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99932023 0.03390360 0.01447627 277.45395262
-0.03382380 -0.99941142 0.00572134 285.88479600
0.01466172 0.00522781 0.99987884 -15.14390073
Axis -0.00728682 -0.00273811 -0.99996970
Axis point 141.20355998 140.61264929 0.00000000
Rotation angle (degrees) 178.05932291
Shift along axis 12.33890027
Average map value = 0.5705 for 185 atoms, 31 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7684, correlation about mean = 0.7483, overlap = 64.71
steps = 40, shift = 0.0109, angle = 0.0243 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99931872 0.03377304 0.01488053 277.41566635
-0.03369105 -0.99941588 0.00572595 285.86483217
0.01506522 0.00522071 0.99987287 -15.19024136
Axis -0.00748882 -0.00273749 -0.99996821
Axis point 141.17653921 140.61216507 0.00000000
Rotation angle (degrees) 178.06686786
Shift along axis 12.32969172
Average map value = 0.5714 for 185 atoms, 31 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7675, correlation about mean = 0.7469, overlap = 64.66
steps = 28, shift = 0.00966, angle = 0.0294 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99932605 0.03374178 0.01445241 277.48183310
-0.03365790 -0.99941534 0.00600709 285.82153332
0.01464664 0.00551661 0.99987750 -15.18229069
Axis -0.00727706 -0.00288179 -0.99996937
Axis point 141.20532577 140.59330598 0.00000000
Rotation angle (degrees) 178.06871662
Shift along axis 12.33889502
Average map value = 0.5704 for 185 atoms, 32 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7685, correlation about mean = 0.7485, overlap = 64.71
steps = 28, shift = 0.0124, angle = 0.0352 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99931669 0.03377339 0.01501543 277.39624589
-0.03369012 -0.99941569 0.00576329 285.85914773
0.01520130 0.00525348 0.99987064 -15.21192305
Axis -0.00755659 -0.00275502 -0.99996765
Axis point 141.16736159 140.60966023 0.00000000
Rotation angle (degrees) 178.06688331
Shift along axis 12.32771272
Average map value = 0.5716 for 185 atoms, 32 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7679, correlation about mean = 0.7475, overlap = 64.69
steps = 44, shift = 0.013, angle = 0.0305 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99932913 0.03362450 0.01451328 277.49088038
-0.03354530 -0.99942112 0.00566554 285.85334476
0.01469538 0.00517489 0.99987862 -15.14054669
Axis -0.00730446 -0.00271091 -0.99996965
Axis point 141.20193141 140.61576372 0.00000000
Rotation angle (degrees) 178.07530668
Shift along axis 12.33824335
Average map value = 0.5706 for 185 atoms, 31 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7676, correlation about mean = 0.7471, overlap = 64.67
steps = 40, shift = 0.000618, angle = 0.0174 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99932454 0.03374923 0.01453981 277.46839449
-0.03366581 -0.99941546 0.00594296 285.83182949
0.01473187 0.00544945 0.99987662 -15.18498740
Axis -0.00732024 -0.00284896 -0.99996915
Axis point 141.19957788 140.59778299 0.00000000
Rotation angle (degrees) 178.06827591
Shift along axis 12.33906210
Average map value = 0.5705 for 185 atoms, 32 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7686, correlation about mean = 0.7487, overlap = 64.72
steps = 28, shift = 0.0129, angle = 0.0346 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99931521 0.03378110 0.01509637 277.38355005
-0.03369818 -0.99941571 0.00571309 285.86737083
0.01528054 0.00520046 0.99986971 -15.21524319
Axis -0.00759665 -0.00272921 -0.99996742
Axis point 141.16196252 140.61313475 0.00000000
Rotation angle (degrees) 178.06643112
Shift along axis 12.32736874
Average map value = 0.5716 for 185 atoms, 31 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7679, correlation about mean = 0.7475, overlap = 64.69
steps = 44, shift = 0.0132, angle = 0.0334 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99932893 0.03361984 0.01453729 277.48814066
-0.03354018 -0.99942117 0.00568825 285.84943388
0.01472011 0.00519685 0.99987814 -15.14707097
Axis -0.00731665 -0.00272208 -0.99996953
Axis point 141.20029689 140.61426245 0.00000000
Rotation angle (degrees) 178.07558670
Shift along axis 12.33822113
Average map value = 0.5706 for 185 atoms, 31 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7676, correlation about mean = 0.7471, overlap = 64.67
steps = 40, shift = 0.000386, angle = 0.0164 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99932487 0.03374730 0.01452156 277.47130758
-0.03366394 -0.99941551 0.00594607 285.83119627
0.01471373 0.00545320 0.99987687 -15.18335363
Axis -0.00731114 -0.00285067 -0.99996921
Axis point 141.20081792 140.59758579 0.00000000
Rotation angle (degrees) 178.06838501
Shift along axis 12.33944362
Average map value = 0.5704 for 185 atoms, 32 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7687, correlation about mean = 0.7488, overlap = 64.73
steps = 28, shift = 0.0144, angle = 0.0373 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99931472 0.03378522 0.01511935 277.37956130
-0.03370251 -0.99941569 0.00569136 285.87093684
0.01530279 0.00517790 0.99986949 -15.21415877
Axis -0.00760796 -0.00271814 -0.99996736
Axis point 141.16038150 140.61457098 0.00000000
Rotation angle (degrees) 178.06618881
Shift along axis 12.32633291
Average map value = 0.5717 for 185 atoms, 31 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.768, correlation about mean = 0.7476, overlap = 64.7
steps = 44, shift = 0.0144, angle = 0.0223 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99932508 0.03363757 0.01475979 277.45403303
-0.03355636 -0.99942047 0.00571509 285.84808043
0.01494348 0.00521595 0.99987473 -15.18218487
Axis -0.00742816 -0.00273357 -0.99996867
Axis point 141.18542490 140.61281413 0.00000000
Rotation angle (degrees) 178.07461306
Shift along axis 12.33934977
Average map value = 0.5706 for 185 atoms, 31 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.769, correlation about mean = 0.7494, overlap = 64.73
steps = 28, shift = 0.0159, angle = 0.096 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99933972 0.03378446 0.01336690 277.62803927
-0.03372297 -0.99941969 0.00479753 285.99826348
0.01352123 0.00434359 0.99989914 -14.83489662
Axis -0.00672413 -0.00228595 -0.99997478
Axis point 141.27832005 140.67185870 0.00000000
Rotation angle (degrees) 178.06563829
Shift along axis 12.31393882
Average map value = 0.572 for 185 atoms, 32 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7675, correlation about mean = 0.747, overlap = 64.66
steps = 48, shift = 0.0174, angle = 0.0864 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99932711 0.03373561 0.01439371 277.49135692
-0.03365363 -0.99941613 0.00589917 285.83637796
0.01458431 0.00541080 0.99987899 -15.16004236
Axis -0.00724679 -0.00282834 -0.99996974
Axis point 141.20952192 140.60057792 0.00000000
Rotation angle (degrees) 178.06901637
Shift along axis 12.34021816
Average map value = 0.5703 for 185 atoms, 32 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.769, correlation about mean = 0.7492, overlap = 64.75
steps = 28, shift = 0.0184, angle = 0.0481 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99931372 0.03380311 0.01514559 277.37285605
-0.03372269 -0.99941589 0.00553334 285.89589099
0.01532379 0.00501879 0.99986998 -15.19168495
Axis -0.00761978 -0.00263883 -0.99996749
Axis point 141.15859703 140.62514927 0.00000000
Rotation angle (degrees) 178.06509750
Shift along axis 12.32324216
Average map value = 0.572 for 185 atoms, 31 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.768, correlation about mean = 0.7476, overlap = 64.7
steps = 44, shift = 0.018, angle = 0.0326 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99932202 0.03380243 0.01458927 277.45340036
-0.03372309 -0.99941523 0.00564939 285.88128974
0.01477170 0.00515356 0.99987760 -15.14943462
Axis -0.00734257 -0.00270155 -0.99996939
Axis point 141.19647256 140.61763449 0.00000000
Rotation angle (degrees) 178.06510932
Shift along axis 12.33942713
Average map value = 0.5705 for 185 atoms, 31 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7684, correlation about mean = 0.7483, overlap = 64.7
steps = 40, shift = 0.0131, angle = 0.0197 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99931855 0.03377030 0.01489818 277.41325506
-0.03368716 -0.99941561 0.00579527 285.85432029
0.01508518 0.00528944 0.99987221 -15.20138505
Axis -0.00749822 -0.00277201 -0.99996805
Axis point 141.17512527 140.60743573 0.00000000
Rotation angle (degrees) 178.06705765
Shift along axis 12.32840085
Average map value = 0.5715 for 185 atoms, 32 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7678, correlation about mean = 0.7473, overlap = 64.69
steps = 44, shift = 0.012, angle = 0.00851 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99931891 0.03376736 0.01488055 277.41733310
-0.03368210 -0.99941491 0.00594258 285.83446679
0.01507251 0.00543733 0.99987161 -15.23276760
Axis -0.00749065 -0.00284584 -0.99996790
Axis point 141.17677917 140.59835762 0.00000000
Rotation angle (degrees) 178.06728683
Shift along axis 12.34080495
Average map value = 0.5705 for 185 atoms, 31 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.769, correlation about mean = 0.7493, overlap = 64.76
steps = 28, shift = 0.0166, angle = 0.0362 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99930948 0.03382077 0.01538379 277.33639761
-0.03373866 -0.99941518 0.00556518 285.89381330
0.01556301 0.00504231 0.99986617 -15.22981198
Axis -0.00773918 -0.00265268 -0.99996653
Axis point 141.14261399 140.62338979 0.00000000
Rotation angle (degrees) 178.06413168
Shift along axis 12.32456172
Average map value = 0.572 for 185 atoms, 31 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7678, correlation about mean = 0.7473, overlap = 64.68
steps = 44, shift = 0.0167, angle = 0.0515 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99932854 0.03363355 0.01453256 277.48669076
-0.03355253 -0.99942021 0.00578224 285.83798386
0.01471861 0.00529076 0.99987767 -15.16061679
Axis -0.00731509 -0.00276907 -0.99996941
Axis point 141.20045104 140.60801888 0.00000000
Rotation angle (degrees) 178.07483950
Shift along axis 12.33880531
Average map value = 0.5705 for 185 atoms, 31 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7686, correlation about mean = 0.7486, overlap = 64.71
steps = 28, shift = 0.0161, angle = 0.0217 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99931855 0.03377955 0.01487683 277.41395642
-0.03369763 -0.99941568 0.00572231 285.86473579
0.01506143 0.00521710 0.99987295 -15.18353284
Axis -0.00748694 -0.00273568 -0.99996823
Axis point 141.17611173 140.61165471 0.00000000
Rotation angle (degrees) 178.06649282
Shift along axis 12.32403384
Average map value = 0.5718 for 185 atoms, 32 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7684, correlation about mean = 0.7484, overlap = 64.69
steps = 48, shift = 0.00588, angle = 0.0802 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99933817 0.03375332 0.01356018 277.60599118
-0.03368481 -0.99941871 0.00524768 285.93020295
0.01372942 0.00478743 0.99989428 -14.93459498
Axis -0.00682453 -0.00250952 -0.99997356
Axis point 141.26535630 140.64218918 0.00000000
Rotation angle (degrees) 178.06762250
Shift along axis 12.32212291
Average map value = 0.5714 for 185 atoms, 32 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7678, correlation about mean = 0.7474, overlap = 64.67
steps = 40, shift = 0.0099, angle = 0.024 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99933397 0.03375471 0.01386264 277.56362003
-0.03368071 -0.99941729 0.00553622 285.89062247
0.01404143 0.00506562 0.99988857 -15.02968095
Axis -0.00697821 -0.00265125 -0.99997214
Axis point 141.24524158 140.62401119 0.00000000
Rotation angle (degrees) 178.06769721
Shift along axis 12.33439985
Average map value = 0.5706 for 185 atoms, 31 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7689, correlation about mean = 0.7491, overlap = 64.74
steps = 28, shift = 0.0133, angle = 0.0491 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99932050 0.03379942 0.01469958 277.43711547
-0.03372384 -0.99941681 0.00535858 285.92050778
0.01487213 0.00485922 0.99987759 -15.10647001
Axis -0.00739527 -0.00255522 -0.99996939
Axis point 141.18880500 140.63629177 0.00000000
Rotation angle (degrees) 178.06517423
Shift along axis 12.32369603
Average map value = 0.5718 for 185 atoms, 31 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7679, correlation about mean = 0.7476, overlap = 64.68
steps = 40, shift = 0.0105, angle = 0.0272 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99932402 0.03376740 0.01453338 277.46645160
-0.03368611 -0.99941561 0.00580074 285.85418558
0.01472076 0.00530724 0.99987755 -15.15995208
Axis -0.00731585 -0.00277783 -0.99996938
Axis point 141.20003765 140.60706820 0.00000000
Rotation angle (degrees) 178.06717342
Shift along axis 12.33553043
Average map value = 0.5708 for 185 atoms, 32 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7684, correlation about mean = 0.7484, overlap = 64.7
steps = 28, shift = 0.0114, angle = 0.0137 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99932041 0.03377068 0.01477152 277.43102878
-0.03368847 -0.99941567 0.00577783 285.85645832
0.01495800 0.00527628 0.99987419 -15.17839184
Axis -0.00743474 -0.00276436 -0.99996854
Axis point 141.18351919 140.60821543 0.00000000
Rotation angle (degrees) 178.06701026
Shift along axis 12.32507651
Average map value = 0.5716 for 185 atoms, 32 outside contour
> save "/Users/u0159610/SwitchLab Dropbox/brajabandhu
> pradhan/Heterotypic_Abeta_medin_manuscript/Data/Morphology_1_Models/morphology1UNit_corrrectedt-12.pdb"
> models #5 relModel #1
> view matrix models
> #5,-0.99932,0.033771,0.014772,276.06,-0.033688,-0.99942,0.0057778,285.51,0.014958,0.0052763,0.99987,-19.749
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7648, correlation about mean = 0.7426, overlap = 66.16
steps = 56, shift = 1.49, angle = 0.894 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99863250 0.04853182 0.01943526 274.58642180
-0.04845828 -0.99881621 0.00423661 288.09392757
0.01961786 0.00328901 0.99980213 -20.47796865
Axis -0.00976952 -0.00188258 -0.99995050
Axis point 140.88882431 140.73288558 0.00000000
Rotation angle (degrees) 177.22021041
Shift along axis 17.25201839
Average map value = 0.5763 for 185 atoms, 31 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7669, correlation about mean = 0.7459, overlap = 66.27
steps = 28, shift = 0.022, angle = 0.0535 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99860956 0.04869785 0.02018448 274.45558372
-0.04863267 -0.99880984 0.00370703 288.19234573
0.02034098 0.00272025 0.99978939 -20.47721272
Axis -0.01013791 -0.00160783 -0.99994732
Axis point 140.84062019 140.76906396 0.00000000
Rotation angle (degrees) 177.21043693
Shift along axis 17.23036367
Average map value = 0.5788 for 185 atoms, 32 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7651, correlation about mean = 0.7431, overlap = 66.17
steps = 44, shift = 0.0195, angle = 0.0569 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99863483 0.04854027 0.01929425 274.60544968
-0.04846957 -0.99881617 0.00411472 288.11294332
0.01947113 0.00317392 0.99980537 -20.43764685
Axis -0.00969753 -0.00182329 -0.99995132
Axis point 140.89833072 140.74086011 0.00000000
Rotation angle (degrees) 177.21964621
Shift along axis 17.24834259
Average map value = 0.5766 for 185 atoms, 31 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7663, correlation about mean = 0.7451, overlap = 66.24
steps = 40, shift = 0.0136, angle = 0.038 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99861853 0.04861284 0.01994415 274.50286616
-0.04854228 -0.99881308 0.00400603 288.13820298
0.02011522 0.00303236 0.99979306 -20.49598797
Axis -0.01002129 -0.00176070 -0.99994824
Axis point 140.85619765 140.74906231 0.00000000
Rotation angle (degrees) 177.21547068
Shift along axis 17.23673069
Average map value = 0.5781 for 185 atoms, 32 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7665, correlation about mean = 0.7453, overlap = 66.25
steps = 40, shift = 0.000865, angle = 0.0312 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99862421 0.04865745 0.01954697 274.55223728
-0.04859540 -0.99881191 0.00363657 288.19667468
0.01970069 0.00268167 0.99980232 -20.38499449
Axis -0.00981822 -0.00158054 -0.99995055
Axis point 140.88244082 140.77246044 0.00000000
Rotation angle (degrees) 177.21267412
Shift along axis 17.23286620
Average map value = 0.5782 for 185 atoms, 32 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7664, correlation about mean = 0.7452, overlap = 66.25
steps = 40, shift = 0.000312, angle = 0.00145 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99862415 0.04865193 0.01956401 274.55065320
-0.04858947 -0.99881213 0.00365440 288.19333880
0.01971857 0.00269877 0.99980192 -20.39035209
Axis -0.00982695 -0.00158928 -0.99995045
Axis point 140.88131302 140.77129630 0.00000000
Rotation angle (degrees) 177.21300212
Shift along axis 17.23332528
Average map value = 0.5782 for 185 atoms, 32 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7662, correlation about mean = 0.7448, overlap = 66.24
steps = 40, shift = 0.00462, angle = 0.00577 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99862537 0.04865680 0.01948914 274.55926531
-0.04859587 -0.99881207 0.00358728 288.20006009
0.01964053 0.00263525 0.99980362 -20.37261459
Axis -0.00978870 -0.00155660 -0.99995088
Axis point 140.88562063 140.77382832 0.00000000
Rotation angle (degrees) 177.21268029
Shift along axis 17.23542427
Average map value = 0.5779 for 185 atoms, 31 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7654, correlation about mean = 0.7436, overlap = 66.21
steps = 60, shift = 0.00826, angle = 0.0301 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99862183 0.04862949 0.01973741 274.52831418
-0.04855871 -0.99881211 0.00404895 288.13392979
0.01991086 0.00308495 0.99979699 -20.48410253
Axis -0.00991844 -0.00178459 -0.99994922
Axis point 140.86894877 140.74573969 0.00000000
Rotation angle (degrees) 177.21452458
Shift along axis 17.24596839
Average map value = 0.577 for 185 atoms, 31 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.765, correlation about mean = 0.7431, overlap = 66.19
steps = 44, shift = 0.0028, angle = 0.0185 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99862214 0.04855864 0.01989544 274.51694021
-0.04848193 -0.99881470 0.00431964 288.08597832
0.02008161 0.00334912 0.99979273 -20.54963693
Axis -0.01000068 -0.00191839 -0.99994815
Axis point 140.85855791 140.72838903 0.00000000
Rotation angle (degrees) 177.21875599
Shift along axis 17.25055525
Average map value = 0.5766 for 185 atoms, 31 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7668, correlation about mean = 0.7458, overlap = 66.26
steps = 44, shift = 0.0179, angle = 0.035 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99860831 0.04867528 0.02030059 274.44269266
-0.04860622 -0.99881046 0.00388133 288.16439333
0.02046536 0.00288920 0.99978638 -20.52016190
Axis -0.01019808 -0.00169370 -0.99994656
Axis point 140.83292328 140.75782858 0.00000000
Rotation angle (degrees) 177.21184109
Shift along axis 17.23221533
Average map value = 0.5787 for 185 atoms, 32 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7651, correlation about mean = 0.7432, overlap = 66.18
steps = 44, shift = 0.0178, angle = 0.0544 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99863169 0.04856440 0.01939581 274.58745321
-0.04849280 -0.99881492 0.00414444 288.11164460
0.01957410 0.00319821 0.99980328 -20.45491958
Axis -0.00974871 -0.00183680 -0.99995079
Axis point 140.89163927 140.73893951 0.00000000
Rotation angle (degrees) 177.21828644
Shift along axis 17.24783521
Average map value = 0.5767 for 185 atoms, 31 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7668, correlation about mean = 0.7458, overlap = 66.26
steps = 44, shift = 0.0169, angle = 0.0382 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99861570 0.04863566 0.02002991 274.48838717
-0.04856594 -0.99881214 0.00395228 288.14939686
0.02019834 0.00297404 0.99979156 -20.49516571
Axis -0.01006354 -0.00173267 -0.99994786
Axis point 140.85119714 140.75293773 0.00000000
Rotation angle (degrees) 177.21413655
Shift along axis 17.23250508
Average map value = 0.5785 for 185 atoms, 32 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.767, correlation about mean = 0.746, overlap = 66.27
steps = 40, shift = 0.00188, angle = 0.0363 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99861738 0.04874263 0.01968309 274.52112152
-0.04868422 -0.99880830 0.00343539 288.23701247
0.01982709 0.00247239 0.99980036 -20.36756752
Axis -0.00988391 -0.00147787 -0.99995006
Axis point 140.87422097 140.78594586 0.00000000
Rotation angle (degrees) 177.20768152
Shift along axis 17.22723107
Average map value = 0.5789 for 185 atoms, 32 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7666, correlation about mean = 0.7455, overlap = 66.24
steps = 44, shift = 0.00429, angle = 0.0289 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99863102 0.04861537 0.01930231 274.59436425
-0.04855201 -0.99881365 0.00373748 288.17679144
0.01946110 0.00279520 0.99980670 -20.36614133
Axis -0.00969706 -0.00163418 -0.99995165
Axis point 140.89885484 140.76551130 0.00000000
Rotation angle (degrees) 177.21512852
Shift along axis 17.23146563
Average map value = 0.5783 for 185 atoms, 32 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7664, correlation about mean = 0.7451, overlap = 66.25
steps = 40, shift = 0.00246, angle = 0.0113 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99862830 0.04863613 0.01939025 274.57896528
-0.04857593 -0.99881312 0.00356328 288.20380400
0.01954054 0.00261649 0.99980563 -20.35398012
Axis -0.00973893 -0.00154590 -0.99995138
Axis point 140.89344703 140.77674832 0.00000000
Rotation angle (degrees) 177.21384629
Shift along axis 17.23334908
Average map value = 0.5781 for 185 atoms, 32 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7666, correlation about mean = 0.7454, overlap = 66.26
steps = 48, shift = 0.00257, angle = 0.0153 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99862232 0.04865613 0.01964656 274.53865594
-0.04859378 -0.99881198 0.00363826 288.19586380
0.01980024 0.00267855 0.99980036 -20.39783473
Axis -0.00986804 -0.00158019 -0.99995006
Axis point 140.87610881 140.77231419 0.00000000
Rotation angle (degrees) 177.21275706
Shift along axis 17.23225486
Average map value = 0.5783 for 185 atoms, 32 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7654, correlation about mean = 0.7436, overlap = 66.21
steps = 44, shift = 0.0118, angle = 0.0216 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99862838 0.04862519 0.01941361 274.57567510
-0.04855772 -0.99881262 0.00393145 288.15000769
0.01958172 0.00298338 0.99980380 -20.42251239
Axis -0.00975508 -0.00172978 -0.99995092
Axis point 140.89063654 140.75281599 0.00000000
Rotation angle (degrees) 177.21468104
Shift along axis 17.24456472
Average map value = 0.577 for 185 atoms, 31 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7666, correlation about mean = 0.7455, overlap = 66.24
steps = 44, shift = 0.0128, angle = 0.0296 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99861893 0.04861936 0.01990806 274.50783555
-0.04854747 -0.99881254 0.00407803 288.12879638
0.02008269 0.00310591 0.99979349 -20.49948898
Axis -0.01000412 -0.00179711 -0.99994834
Axis point 140.85883921 140.74427652 0.00000000
Rotation angle (degrees) 177.21513493
Shift along axis 17.23442155
Average map value = 0.5783 for 185 atoms, 32 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7669, correlation about mean = 0.7459, overlap = 66.26
steps = 40, shift = 0.00227, angle = 0.0364 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99862422 0.04867738 0.01949685 274.55744750
-0.04861620 -0.99881103 0.00359900 288.20418258
0.01964886 0.00264619 0.99980343 -20.36857339
Axis -0.00979272 -0.00156227 -0.99995083
Axis point 140.88626132 140.77455822 0.00000000
Rotation angle (degrees) 177.21150657
Shift along axis 17.22865660
Average map value = 0.5787 for 185 atoms, 32 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7664, correlation about mean = 0.7452, overlap = 66.24
steps = 44, shift = 0.00528, angle = 0.0157 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99863197 0.04859611 0.01930146 274.59714400
-0.04853209 -0.99881449 0.00377113 288.16944577
0.01946184 0.00282923 0.99980659 -20.37344989
Axis -0.00969702 -0.00165111 -0.99995162
Axis point 140.89878030 140.76333079 0.00000000
Rotation angle (degrees) 177.21625221
Shift along axis 17.23388834
Average map value = 0.578 for 185 atoms, 32 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7653, correlation about mean = 0.7435, overlap = 66.19
steps = 44, shift = 0.0108, angle = 0.0129 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99863445 0.04859553 0.01917438 274.61447314
-0.04852826 -0.99881395 0.00395772 288.14218726
0.01934397 0.00302182 0.99980831 -20.39518889
Axis -0.00963574 -0.00174597 -0.99995205
Axis point 140.90645211 140.75064236 0.00000000
Rotation angle (degrees) 177.21637984
Shift along axis 17.24500934
Average map value = 0.5769 for 185 atoms, 31 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7651, correlation about mean = 0.7431, overlap = 66.17
steps = 40, shift = 0.00151, angle = 0.038 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99862957 0.04848447 0.01970240 274.55603015
-0.04840799 -0.99881820 0.00434003 288.07261732
0.01988954 0.00338033 0.99979646 -20.52679285
Axis -0.00990431 -0.00193129 -0.99994909
Axis point 140.87148942 140.72646688 0.00000000
Rotation angle (degrees) 177.22300696
Shift along axis 17.25010647
Average map value = 0.5766 for 185 atoms, 32 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7668, correlation about mean = 0.7459, overlap = 66.26
steps = 28, shift = 0.0186, angle = 0.0471 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99860716 0.04866608 0.02037878 274.43284837
-0.04859614 -0.99881083 0.00391254 288.15886345
0.02054495 0.00291676 0.99978467 -20.53499873
Axis -0.01023755 -0.00170840 -0.99994614
Axis point 140.82772520 140.75599880 0.00000000
Rotation angle (degrees) 177.21239283
Shift along axis 17.23208293
Average map value = 0.5787 for 185 atoms, 32 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7651, correlation about mean = 0.7432, overlap = 66.18
steps = 44, shift = 0.0185, angle = 0.0576 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99863147 0.04856347 0.01940919 274.58567027
-0.04849167 -0.99881494 0.00415197 288.11048160
0.01958782 0.00320510 0.99980299 -20.45794905
Axis -0.00975549 -0.00184041 -0.99995072
Axis point 140.89074468 140.73848837 0.00000000
Rotation angle (degrees) 177.21834538
Shift along axis 17.24798139
Average map value = 0.5767 for 185 atoms, 31 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7668, correlation about mean = 0.7458, overlap = 66.25
steps = 44, shift = 0.017, angle = 0.0382 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99861540 0.04863844 0.02003831 274.48623639
-0.04856881 -0.99881203 0.00394649 288.15023914
0.02020646 0.00296779 0.99979141 -20.49530568
Axis -0.01006768 -0.00172965 -0.99994782
Axis point 140.85037883 140.75315861 0.00000000
Rotation angle (degrees) 177.21397421
Shift along axis 17.23239799
Average map value = 0.5785 for 185 atoms, 32 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7651, correlation about mean = 0.7431, overlap = 66.18
steps = 44, shift = 0.0177, angle = 0.0416 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99863280 0.04857027 0.01932355 274.59645257
-0.04850066 -0.99881491 0.00405447 288.12550425
0.01949757 0.00311172 0.99980505 -20.43207583
Axis -0.00971148 -0.00179266 -0.99995124
Axis point 140.89629855 140.74482651 0.00000000
Rotation angle (degrees) 177.21789392
Shift along axis 17.24782839
Average map value = 0.5767 for 185 atoms, 31 outside contour
> save "/Users/u0159610/SwitchLab Dropbox/brajabandhu
> pradhan/Heterotypic_Abeta_medin_manuscript/Data/Morphology_1_Models/morphology1UNit_corrrectedt-13.pdb"
> models #5 relModel #1
> view matrix models
> #5,-0.99863,0.04857,0.019324,274.27,-0.048501,-0.99881,0.0040545,288.22,0.019498,0.0031117,0.99981,-24.993
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7624, correlation about mean = 0.7406, overlap = 65.21
steps = 44, shift = 0.564, angle = 1.12 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99776932 0.06526066 0.01404912 272.90028975
-0.06532537 -0.99785517 -0.00419816 291.47922186
0.01374501 -0.00510656 0.99989248 -23.23382645
Axis -0.00695614 0.00232875 -0.99997309
Axis point 141.29334576 141.25043634 0.00000000
Rotation angle (degrees) 176.25622184
Shift along axis 22.01364855
Average map value = 0.5722 for 185 atoms, 29 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7624, correlation about mean = 0.7406, overlap = 65.18
steps = 36, shift = 0.00345, angle = 0.196 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99781064 0.06521619 0.01098734 273.34071956
-0.06528177 -0.99785045 -0.00572117 291.68339705
0.01059060 -0.00642592 0.99992326 -22.58764013
Axis -0.00540035 0.00304009 -0.99998080
Axis point 141.49352891 141.34169512 0.00000000
Rotation angle (degrees) 176.25877883
Shift along axis 21.99781482
Average map value = 0.5722 for 185 atoms, 29 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7617, correlation about mean = 0.7393, overlap = 65.2
steps = 28, shift = 0.0102, angle = 0.0994 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99783007 0.06517434 0.00934872 273.57850277
-0.06523457 -0.99785011 -0.00629168 291.75518209
0.00891856 -0.00688789 0.99993650 -22.28787002
Axis -0.00457176 0.00329847 -0.99998411
Axis point 141.60016724 141.37466458 0.00000000
Rotation angle (degrees) 176.26134804
Shift along axis 21.99912687
Average map value = 0.572 for 185 atoms, 29 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7617, correlation about mean = 0.7394, overlap = 65.2
steps = 40, shift = 0.00131, angle = 0.0611 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99784082 0.06514252 0.00837202 273.72143238
-0.06519945 -0.99784961 -0.00672005 291.80931171
0.00791625 -0.00725139 0.99994236 -22.09019471
Axis -0.00407646 0.00349665 -0.99998558
Axis point 141.66405900 141.40002384 0.00000000
Rotation angle (degrees) 176.26327529
Shift along axis 21.99441431
Average map value = 0.572 for 185 atoms, 29 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.763, correlation about mean = 0.7415, overlap = 65.15
steps = 44, shift = 0.012, angle = 0.0483 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99784701 0.06514000 0.00762026 273.82766625
-0.06519423 -0.99784732 -0.00710025 291.86109200
0.00714134 -0.00758176 0.99994575 -21.91732687
Axis -0.00369438 0.00367448 -0.99998642
Axis point 141.71312689 141.42294614 0.00000000
Rotation angle (degrees) 176.26350063
Shift along axis 21.97784328
Average map value = 0.5728 for 185 atoms, 29 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7613, correlation about mean = 0.7387, overlap = 65.2
steps = 40, shift = 0.017, angle = 0.0388 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99785423 0.06509986 0.00699169 273.92187416
-0.06515095 -0.99784833 -0.00735025 291.88957319
0.00649815 -0.00778999 0.99994853 -21.81034151
Axis -0.00337609 0.00378915 -0.99998712
Axis point 141.75392540 141.43758226 0.00000000
Rotation angle (degrees) 176.26589823
Shift along axis 21.99128886
Average map value = 0.5718 for 185 atoms, 29 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7629, correlation about mean = 0.7414, overlap = 65.15
steps = 44, shift = 0.0155, angle = 0.00397 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99785074 0.06515737 0.00695397 273.91817516
-0.06520822 -0.99784454 -0.00735769 291.89765983
0.00645957 -0.00779533 0.99994874 -21.78847673
Axis -0.00335700 0.00379236 -0.99998717
Axis point 141.75616237 141.43775685 0.00000000
Rotation angle (degrees) 176.26260322
Shift along axis 21.97563343
Average map value = 0.5728 for 185 atoms, 29 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7615, correlation about mean = 0.739, overlap = 65.2
steps = 28, shift = 0.0145, angle = 0.0108 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99785366 0.06510009 0.00707118 273.91101286
-0.06515097 -0.99784926 -0.00722292 291.87155511
0.00658576 -0.00766812 0.99994890 -21.83990798
Axis -0.00341791 0.00372678 -0.99998721
Axis point 141.74873812 141.42935272 0.00000000
Rotation angle (degrees) 176.26589153
Shift along axis 21.99116686
Average map value = 0.5719 for 185 atoms, 29 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7609, correlation about mean = 0.7381, overlap = 65.18
steps = 44, shift = 0.00245, angle = 0.0207 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99785329 0.06508810 0.00723195 273.89102108
-0.06514239 -0.99784743 -0.00754557 291.91528205
0.00672526 -0.00800048 0.99994537 -21.81380028
Axis -0.00349306 0.00389071 -0.99998633
Axis point 141.73942726 141.45047404 0.00000000
Rotation angle (degrees) 176.26647842
Shift along axis 21.99254192
Average map value = 0.5713 for 185 atoms, 29 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7608, correlation about mean = 0.7378, overlap = 65.18
steps = 48, shift = 0.00182, angle = 0.0195 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99785648 0.06507081 0.00694122 273.93533578
-0.06512390 -0.99784730 -0.00772139 291.93734319
0.00642384 -0.00815688 0.99994609 -21.74862526
Axis -0.00334486 0.00397386 -0.99998651
Axis point 141.75887755 141.46128943 0.00000000
Rotation angle (degrees) 176.26750643
Shift along axis 21.99217277
Average map value = 0.5712 for 185 atoms, 29 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7628, correlation about mean = 0.7411, overlap = 65.16
steps = 48, shift = 0.0159, angle = 0.0324 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99785398 0.06516421 0.00640369 273.99512837
-0.06521207 -0.99784266 -0.00757522 291.92843489
0.00589624 -0.00797656 0.99995079 -21.68246921
Axis -0.00307830 0.00389215 -0.99998769
Axis point 141.79229225 141.45074517 0.00000000
Rotation angle (degrees) 176.26229817
Shift along axis 21.97499298
Average map value = 0.5728 for 185 atoms, 29 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7618, correlation about mean = 0.7395, overlap = 65.19
steps = 28, shift = 0.0097, angle = 0.0137 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99785814 0.06508262 0.00658217 273.98310429
-0.06513107 -0.99784898 -0.00743839 291.89888496
0.00608390 -0.00785116 0.99995066 -21.73781978
Axis -0.00316992 0.00382651 -0.99998765
Axis point 141.78095279 141.44232576 0.00000000
Rotation angle (degrees) 176.26696561
Shift along axis 21.98600136
Average map value = 0.5721 for 185 atoms, 29 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7628, correlation about mean = 0.7412, overlap = 65.12
steps = 48, shift = 0.0133, angle = 0.0236 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99785305 0.06513343 0.00684612 273.93808483
-0.06518593 -0.99784302 -0.00775053 291.94945115
0.00632653 -0.00818017 0.99994652 -21.71159046
Axis -0.00329671 0.00398698 -0.99998662
Axis point 141.76442229 141.46296598 0.00000000
Rotation angle (degrees) 176.26392839
Shift along axis 21.97220219
Average map value = 0.5725 for 185 atoms, 29 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7617, correlation about mean = 0.7394, overlap = 65.16
steps = 28, shift = 0.0127, angle = 0.011 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99785547 0.06510635 0.00675093 273.95809427
-0.06515705 -0.99784617 -0.00758619 291.92139368
0.00624247 -0.00800979 0.99994843 -21.73675197
Axis -0.00325185 0.00390321 -0.99998710
Axis point 141.77150034 141.45141368 0.00000000
Rotation angle (degrees) 176.26553647
Shift along axis 21.98503097
Average map value = 0.5719 for 185 atoms, 29 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7611, correlation about mean = 0.7384, overlap = 65.2
steps = 44, shift = 0.00701, angle = 0.037 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99786042 0.06509115 0.00613764 274.04413998
-0.06513809 -0.99784585 -0.00778781 291.94738475
0.00561750 -0.00817095 0.99995083 -21.62884993
Axis -0.00294195 0.00399400 -0.99998770
Axis point 141.81013105 141.46352602 0.00000000
Rotation angle (degrees) 176.26651955
Shift along axis 21.98839737
Average map value = 0.5716 for 185 atoms, 29 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7613, correlation about mean = 0.7387, overlap = 65.2
steps = 48, shift = 0.00219, angle = 0.045 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99785480 0.06510758 0.00683656 273.94316831
-0.06515797 -0.99784729 -0.00742890 291.90083056
0.00633816 -0.00785842 0.99994903 -21.77734203
Axis -0.00329723 0.00382596 -0.99998725
Axis point 141.76436649 141.44204860 0.00000000
Rotation angle (degrees) 176.26547559
Shift along axis 21.99061188
Average map value = 0.5717 for 185 atoms, 29 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7625, correlation about mean = 0.7406, overlap = 65.13
steps = 44, shift = 0.0139, angle = 0.018 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99785178 0.06514083 0.00695983 273.92074996
-0.06519404 -0.99784275 -0.00771640 291.94574595
0.00644216 -0.00815357 0.99994600 -21.73530259
Axis -0.00335411 0.00397179 -0.99998649
Axis point 141.75693173 141.46095882 0.00000000
Rotation angle (degrees) 176.26348237
Shift along axis 21.97579450
Average map value = 0.5723 for 185 atoms, 29 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7617, correlation about mean = 0.7393, overlap = 65.18
steps = 40, shift = 0.0103, angle = 0.019 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99785576 0.06510634 0.00670727 273.96169022
-0.06515618 -0.99784684 -0.00750494 291.91120513
0.00620420 -0.00792587 0.99994933 -21.74442747
Axis -0.00323134 0.00386187 -0.99998732
Axis point 141.77290182 141.44673510 0.00000000
Rotation angle (degrees) 176.26556283
Shift along axis 21.98621081
Average map value = 0.572 for 185 atoms, 29 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7612, correlation about mean = 0.7386, overlap = 65.2
steps = 40, shift = 0.00426, angle = 0.0085 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99785564 0.06509548 0.00683018 273.94616619
-0.06514578 -0.99784813 -0.00742265 291.89835191
0.00633230 -0.00785169 0.99994912 -21.77818341
Axis -0.00329416 0.00382271 -0.99998727
Axis point 141.76490518 141.44163002 0.00000000
Rotation angle (degrees) 176.26617294
Shift along axis 21.99132521
Average map value = 0.5717 for 185 atoms, 29 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7611, correlation about mean = 0.7383, overlap = 65.22
steps = 48, shift = 0.00186, angle = 0.0105 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99785574 0.06508243 0.00693820 273.93289645
-0.06513262 -0.99785009 -0.00727429 291.87610947
0.00644985 -0.00771060 0.99994946 -21.81779730
Axis -0.00335062 0.00375027 -0.99998735
Axis point 141.75765487 141.43232053 0.00000000
Rotation angle (degrees) 176.26692567
Shift along axis 21.99429089
Average map value = 0.5716 for 185 atoms, 29 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7614, correlation about mean = 0.7388, overlap = 65.2
steps = 48, shift = 0.00329, angle = 0.0139 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99785209 0.06511259 0.00717665 273.89454299
-0.06516441 -0.99784824 -0.00724274 291.87620649
0.00668961 -0.00769485 0.99994801 -21.85166776
Axis -0.00347030 0.00373844 -0.99998699
Axis point 141.74211889 141.43088526 0.00000000
Rotation angle (degrees) 176.26514571
Shift along axis 21.99204803
Average map value = 0.5718 for 185 atoms, 29 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7614, correlation about mean = 0.7389, overlap = 65.21
steps = 44, shift = 0.000405, angle = 0.0117 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99785550 0.06508237 0.00697428 273.92785678
-0.06513270 -0.99785024 -0.00725206 291.87319002
0.00648730 -0.00769076 0.99994937 -21.82316561
Axis -0.00336902 0.00373974 -0.99998733
Axis point 141.75530202 141.43104049 0.00000000
Rotation angle (degrees) 176.26692510
Shift along axis 21.99155183
Average map value = 0.5719 for 185 atoms, 29 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7613, correlation about mean = 0.7387, overlap = 65.21
steps = 48, shift = 0.000751, angle = 0.00698 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99785517 0.06509649 0.00688803 273.93772729
-0.06514670 -0.99784871 -0.00733687 291.88668727
0.00639561 -0.00776986 0.99994935 -21.79898737
Axis -0.00332448 0.00378076 -0.99998733
Axis point 141.76094546 141.43627600 0.00000000
Rotation angle (degrees) 176.26611775
Shift along axis 21.99156388
Average map value = 0.5718 for 185 atoms, 29 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7615, correlation about mean = 0.739, overlap = 65.2
steps = 40, shift = 0.00125, angle = 0.00404 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99785627 0.06507474 0.00693428 273.93463379
-0.06512499 -0.99785048 -0.00728833 291.87714444
0.00644508 -0.00772430 0.99994939 -21.81161493
Axis -0.00334844 0.00375721 -0.99998734
Axis point 141.75794370 141.43327272 0.00000000
Rotation angle (degrees) 176.26736537
Shift along axis 21.99072955
Average map value = 0.5719 for 185 atoms, 29 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7629, correlation about mean = 0.7414, overlap = 65.15
steps = 44, shift = 0.0149, angle = 0.00619 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99784982 0.06516929 0.00697469 273.91337556
-0.06522006 -0.99784404 -0.00731991 291.89406748
0.00648261 -0.00775906 0.99994888 -21.79716311
Axis -0.00336796 0.00377382 -0.99998721
Axis point 141.75471403 141.43540418 0.00000000
Rotation angle (degrees) 176.26192096
Shift along axis 21.97591257
Average map value = 0.5729 for 185 atoms, 29 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7614, correlation about mean = 0.739, overlap = 65.21
steps = 28, shift = 0.0149, angle = 0.0109 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99785568 0.06506878 0.00707440 273.91548551
-0.06511949 -0.99785153 -0.00719361 291.86325457
0.00659112 -0.00763886 0.99994909 -21.84539743
Axis -0.00342006 0.00371212 -0.99998726
Axis point 141.74857947 141.42743627 0.00000000
Rotation angle (degrees) 176.26769417
Shift along axis 21.99174474
Average map value = 0.5719 for 185 atoms, 29 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7609, correlation about mean = 0.738, overlap = 65.18
steps = 44, shift = 0.00236, angle = 0.022 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99785339 0.06508680 0.00722947 273.89163803
-0.06514105 -0.99784753 -0.00754394 291.91494506
0.00672290 -0.00799868 0.99994540 -21.81404795
Axis -0.00349185 0.00388986 -0.99998634
Axis point 141.73962069 141.45039586 0.00000000
Rotation angle (degrees) 176.26655452
Shift along axis 21.99286863
Average map value = 0.5713 for 185 atoms, 29 outside contour
> view matrix models
> #5,-0.99785,0.065087,0.0072295,273.74,-0.065141,-0.99785,-0.0075439,291.71,0.0067229,-0.0079987,0.99995,-26.366
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7643, correlation about mean = 0.7417, overlap = 63.42
steps = 68, shift = 0.285, angle = 1.15 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99674663 0.08053076 0.00329969 272.12798172
-0.08051468 -0.99674213 0.00474017 292.22444520
0.00367067 0.00445907 0.99998331 -27.75410997
Axis -0.00174544 -0.00230354 -0.99999582
Axis point 141.98174122 140.65617659 0.00000000
Rotation angle (degrees) 175.38136822
Shift along axis 26.60586024
Average map value = 0.5483 for 185 atoms, 33 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7635, correlation about mean = 0.7407, overlap = 63.42
steps = 40, shift = 0.000897, angle = 0.055 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99674393 0.08053358 0.00397890 272.03197802
-0.08051154 -0.99673894 0.00541765 292.12956038
0.00440222 0.00507966 0.99997740 -27.95006892
Axis -0.00209870 -0.00262859 -0.99999434
Axis point 141.93711448 140.61524330 0.00000000
Rotation angle (degrees) 175.38137062
Shift along axis 26.61110634
Average map value = 0.548 for 185 atoms, 33 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7635, correlation about mean = 0.7406, overlap = 63.34
steps = 40, shift = 0.0105, angle = 0.0739 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99673431 0.08058166 0.00522105 271.85020693
-0.08055143 -0.99673380 0.00575976 292.08673919
0.00566813 0.00532038 0.99996977 -28.15872213
Axis -0.00272675 -0.00277455 -0.99999243
Axis point 141.85775582 140.59646494 0.00000000
Rotation angle (degrees) 175.37883367
Shift along axis 26.60683148
Average map value = 0.5479 for 185 atoms, 33 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7623, correlation about mean = 0.7388, overlap = 63.32
steps = 48, shift = 0.00498, angle = 0.0565 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99674120 0.08055422 0.00423665 271.99111788
-0.08052950 -0.99673586 0.00570960 292.08944077
0.00468275 0.00534982 0.99997472 -28.01491015
Axis -0.00223350 -0.00276936 -0.99999367
Axis point 141.91933115 140.59666599 0.00000000
Rotation angle (degrees) 175.38025797
Shift along axis 26.59834194
Average map value = 0.5473 for 185 atoms, 33 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7635, correlation about mean = 0.7407, overlap = 63.43
steps = 60, shift = 0.0158, angle = 0.00841 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99674174 0.08054699 0.00424685 271.99240619
-0.08052290 -0.99673722 0.00556333 292.11062149
0.00468110 0.00520323 0.99997550 -28.00910979
Axis -0.00223563 -0.00269602 -0.99999387
Axis point 141.91987717 140.60666853 0.00000000
Rotation angle (degrees) 175.38065664
Shift along axis 26.61332687
Average map value = 0.548 for 185 atoms, 33 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.764, correlation about mean = 0.7415, overlap = 63.42
steps = 40, shift = 0.000127, angle = 0.0516 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99673546 0.08057344 0.00512638 271.86534914
-0.08054376 -0.99673446 0.00575125 292.08719866
0.00557304 0.00531957 0.99997031 -28.15583934
Axis -0.00267923 -0.00277221 -0.99999257
Axis point 141.86407853 140.59692089 0.00000000
Rotation angle (degrees) 175.37929048
Shift along axis 26.61751090
Average map value = 0.5482 for 185 atoms, 33 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7629, correlation about mean = 0.7398, overlap = 63.36
steps = 40, shift = 0.00946, angle = 0.0153 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99673600 0.08057787 0.00495033 271.88872196
-0.08054805 -0.99673294 0.00595179 292.05929588
0.00541374 0.00553362 0.99997003 -28.15420061
Axis -0.00259526 -0.00287603 -0.99999250
Axis point 141.87439340 140.58370446 0.00000000
Rotation angle (degrees) 175.37903983
Shift along axis 26.60839569
Average map value = 0.5477 for 185 atoms, 33 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7635, correlation about mean = 0.7407, overlap = 63.33
steps = 44, shift = 0.00376, angle = 0.062 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99673781 0.08059772 0.00420503 271.98982768
-0.08057568 -0.99673508 0.00516767 292.17258872
0.00460780 0.00481199 0.99997780 -27.92869786
Axis -0.00220681 -0.00249898 -0.99999444
Axis point 141.92303156 140.63132944 0.00000000
Rotation angle (degrees) 175.37768433
Shift along axis 26.59818027
Average map value = 0.548 for 185 atoms, 33 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.763, correlation about mean = 0.7399, overlap = 63.38
steps = 44, shift = 0.00665, angle = 0.0243 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99674141 0.08055771 0.00411776 272.00943142
-0.08053421 -0.99673621 0.00558016 292.10896859
0.00455384 0.00523036 0.99997594 -27.98794931
Axis -0.00217144 -0.00270703 -0.99999398
Axis point 141.92824749 140.60490716 0.00000000
Rotation angle (degrees) 175.38002381
Shift along axis 26.60638041
Average map value = 0.5477 for 185 atoms, 33 outside contour
> save "/Users/u0159610/SwitchLab Dropbox/brajabandhu
> pradhan/Heterotypic_Abeta_medin_manuscript/Data/Morphology_1_Models/morphology1UNit_corrrectedt-14.pdb"
> view matrix models
> #5,-0.99674,0.080558,0.0041178,271.84,-0.080534,-0.99674,0.0055802,291.89,0.0045538,0.0052304,0.99998,-33.04
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.77, correlation about mean = 0.7473, overlap = 65.41
steps = 68, shift = 0.348, angle = 1.03 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99515466 0.09799725 0.00798049 268.77934370
-0.09794720 -0.99517078 0.00643695 294.29616978
0.00857275 0.00562410 0.99994743 -33.55650729
Axis -0.00414835 -0.00302256 -0.99998683
Axis point 141.68740082 140.59630928 0.00000000
Rotation angle (degrees) 174.37751126
Shift along axis 31.55154780
Average map value = 0.5689 for 185 atoms, 27 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7683, correlation about mean = 0.7449, overlap = 65.34
steps = 48, shift = 0.0178, angle = 0.104 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99512674 0.09815864 0.00935979 268.55845650
-0.09808912 -0.99514847 0.00761691 294.14949679
0.01006204 0.00666170 0.99992718 -33.90467744
Axis -0.00486730 -0.00357834 -0.99998175
Axis point 141.59800804 140.52745913 0.00000000
Rotation angle (degrees) 174.36875128
Shift along axis 31.54433869
Average map value = 0.5685 for 185 atoms, 28 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7701, correlation about mean = 0.7474, overlap = 65.42
steps = 44, shift = 0.0196, angle = 0.102 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99514443 0.09809656 0.00803609 268.75618058
-0.09804620 -0.99516103 0.00643669 294.30931112
0.00862861 0.00561753 0.99994698 -33.56545319
Axis -0.00417630 -0.00302086 -0.99998672
Axis point 141.68398089 140.59669670 0.00000000
Rotation angle (degrees) 174.37180215
Shift along axis 31.55353250
Average map value = 0.5689 for 185 atoms, 27 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7698, correlation about mean = 0.7473, overlap = 65.39
steps = 48, shift = 0.00556, angle = 0.105 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99512703 0.09812394 0.00968638 268.51867815
-0.09805614 -0.99515452 0.00724223 294.19801683
0.01035007 0.00625713 0.99992685 -33.90206878
Axis -0.00502132 -0.00338304 -0.99998167
Axis point 141.57925921 140.55154970 0.00000000
Rotation angle (degrees) 174.37069925
Shift along axis 31.55784516
Average map value = 0.5689 for 185 atoms, 28 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7699, correlation about mean = 0.7473, overlap = 65.41
steps = 44, shift = 0.00408, angle = 0.0739 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99511620 0.09811413 0.01083113 268.35926139
-0.09803240 -0.99515236 0.00783554 294.11238107
0.01154740 0.00673547 0.99991063 -34.14851625
Axis -0.00560828 -0.00365162 -0.99997761
Axis point 141.50711226 140.51827749 0.00000000
Rotation angle (degrees) 174.37164215
Shift along axis 31.56873035
Average map value = 0.5687 for 185 atoms, 28 outside contour
> view matrix models
> #5,-0.99512,0.098114,0.010831,268.22,-0.098032,-0.99515,0.0078355,294.8,0.011547,0.0067355,0.99991,-29.69
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7636, correlation about mean = 0.741, overlap = 63.35
steps = 52, shift = 0.825, angle = 1.05 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99672744 0.08059981 0.00616635 271.71441982
-0.08056205 -0.99673066 0.00614188 292.03485417
0.00664122 0.00562500 0.99996212 -28.34506888
Axis -0.00320714 -0.00294652 -0.99999052
Axis point 141.79704937 140.57469587 0.00000000
Rotation angle (degrees) 175.37799761
Shift along axis 26.61288629
Average map value = 0.5479 for 185 atoms, 33 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7643, correlation about mean = 0.7418, overlap = 63.41
steps = 48, shift = 0.00926, angle = 0.0718 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99673674 0.08056219 0.00505491 271.87666911
-0.08053393 -0.99673633 0.00556277 292.11234022
0.00548656 0.00513752 0.99997174 -28.11586524
Axis -0.00263968 -0.00267943 -0.99999293
Axis point 141.86880797 140.60864915 0.00000000
Rotation angle (degrees) 175.37989823
Shift along axis 26.61530428
Average map value = 0.5483 for 185 atoms, 33 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7643, correlation about mean = 0.7418, overlap = 63.43
steps = 40, shift = 0.00256, angle = 0.0204 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99673462 0.08057005 0.00533896 271.83605949
-0.08053910 -0.99673470 0.00577608 292.08324727
0.00578691 0.00532722 0.99996906 -28.18954501
Axis -0.00278602 -0.00278035 -0.99999225
Axis point 141.85061652 140.59591197 0.00000000
Rotation angle (degrees) 175.37952085
Shift along axis 26.61989292
Average map value = 0.5483 for 185 atoms, 33 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7636, correlation about mean = 0.7409, overlap = 63.44
steps = 40, shift = 0.00107, angle = 0.0244 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99673449 0.08056064 0.00550391 271.81342803
-0.08052647 -0.99673337 0.00616775 292.02644935
0.00598281 0.00570440 0.99996582 -28.27270932
Axis -0.00287638 -0.00297287 -0.99999144
Axis point 141.83885284 140.57150192 0.00000000
Rotation angle (degrees) 175.38015050
Shift along axis 26.62246997
Average map value = 0.5481 for 185 atoms, 33 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7636, correlation about mean = 0.7408, overlap = 63.35
steps = 28, shift = 0.0127, angle = 0.0936 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99671901 0.08083041 0.00419668 271.95436803
-0.08080815 -0.99671596 0.00522591 292.19594763
0.00460531 0.00486964 0.99997753 -27.93881328
Axis -0.00220412 -0.00252802 -0.99999438
Axis point 141.92284077 140.62824914 0.00000000
Rotation angle (degrees) 175.36431427
Shift along axis 26.60055820
Average map value = 0.5481 for 185 atoms, 34 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7644, correlation about mean = 0.7419, overlap = 63.43
steps = 48, shift = 0.0117, angle = 0.017 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99674202 0.08054822 0.00415616 272.00529269
-0.08052652 -0.99673918 0.00514401 292.16970300
0.00455694 0.00479257 0.99997812 -27.93229688
Axis -0.00218183 -0.00248818 -0.99999452
Axis point 141.92673329 140.63281355 0.00000000
Rotation angle (degrees) 175.38052028
Shift along axis 26.61170209
Average map value = 0.5484 for 185 atoms, 33 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7637, correlation about mean = 0.7409, overlap = 63.36
steps = 40, shift = 0.00947, angle = 0.0365 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99673755 0.08057340 0.00470473 271.92414236
-0.08054743 -0.99673576 0.00546763 292.12689872
0.00512992 0.00507083 0.99997398 -28.04653964
Axis -0.00246268 -0.00263890 -0.99999349
Axis point 141.89114238 140.61356741 0.00000000
Rotation angle (degrees) 175.37919089
Shift along axis 26.60579845
Average map value = 0.548 for 185 atoms, 33 outside contour
> save "/Users/u0159610/SwitchLab Dropbox/brajabandhu
> pradhan/Heterotypic_Abeta_medin_manuscript/Data/Morphology_1_Models/morphology1UNit_corrrectedt-14.pdb"
> models #5 relModel #1
> view matrix models
> #5,-0.99674,0.080573,0.0047047,271.7,-0.080547,-0.99674,0.0054676,292.04,0.0051299,0.0050708,0.99997,-32.646
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7689, correlation about mean = 0.7459, overlap = 65.35
steps = 48, shift = 0.442, angle = 1.02 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99515314 0.09810740 0.00671712 268.93868891
-0.09806727 -0.99516131 0.00606190 294.36364892
0.00727933 0.00537379 0.99995906 -33.31760148
Axis -0.00350761 -0.00286585 -0.99998974
Axis point 141.76593033 140.61590278 0.00000000
Rotation angle (degrees) 174.37090070
Shift along axis 31.53032650
Average map value = 0.5689 for 185 atoms, 29 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7702, correlation about mean = 0.7476, overlap = 65.42
steps = 44, shift = 0.0168, angle = 0.0233 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99515264 0.09808643 0.00708625 268.89127634
-0.09804561 -0.99516445 0.00589386 294.38476016
0.00763008 0.00517052 0.99995751 -33.35584222
Axis -0.00368801 -0.00277279 -0.99998936
Axis point 141.74417293 140.62742417 0.00000000
Rotation angle (degrees) 174.37212571
Shift along axis 31.54754408
Average map value = 0.5691 for 185 atoms, 27 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7686, correlation about mean = 0.7455, overlap = 65.34
steps = 40, shift = 0.0183, angle = 0.158 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99512742 0.09815183 0.00935881 268.55972599
-0.09808384 -0.99515013 0.00746565 294.16989780
0.01004619 0.00651133 0.99992833 -33.88194183
Axis -0.00486307 -0.00350275 -0.99998204
Axis point 141.59850674 140.53672323 0.00000000
Rotation angle (degrees) 174.36910102
Shift along axis 31.54490540
Average map value = 0.5686 for 185 atoms, 28 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7702, correlation about mean = 0.7476, overlap = 65.41
steps = 44, shift = 0.0174, angle = 0.127 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99514860 0.09809001 0.00758681 268.82019592
-0.09804454 -0.99516302 0.00614761 294.34928412
0.00815313 0.00537394 0.99995231 -33.46030467
Axis -0.00394454 -0.00288737 -0.99998805
Axis point 141.71244631 140.61319345 0.00000000
Rotation angle (degrees) 174.37204613
Shift along axis 31.54963716
Average map value = 0.5691 for 185 atoms, 27 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7686, correlation about mean = 0.7454, overlap = 65.35
steps = 40, shift = 0.0167, angle = 0.0955 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99513180 0.09815597 0.00883436 268.63306555
-0.09809344 -0.99515077 0.00725243 294.20100503
0.00950338 0.00635053 0.99993467 -33.78076435
Axis -0.00459560 -0.00340901 -0.99998363
Axis point 141.63159057 140.54847676 0.00000000
Rotation angle (degrees) 174.36871460
Shift along axis 31.54274757
Average map value = 0.5686 for 185 atoms, 28 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7701, correlation about mean = 0.7475, overlap = 65.42
steps = 44, shift = 0.018, angle = 0.0836 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99514716 0.09809180 0.00775059 268.79749507
-0.09804438 -0.99516223 0.00627680 294.33160286
0.00832879 0.00548644 0.99995025 -33.50331876
Axis -0.00402961 -0.00294794 -0.99998754
Axis point 141.70228649 140.60585908 0.00000000
Rotation angle (degrees) 174.37199612
Shift along axis 31.55208105
Average map value = 0.569 for 185 atoms, 27 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7692, correlation about mean = 0.7466, overlap = 65.32
steps = 48, shift = 0.0206, angle = 0.117 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99512488 0.09815731 0.00956854 268.53016149
-0.09809076 -0.99515147 0.00719215 294.20936021
0.01022811 0.00621851 0.99992835 -33.86400709
Axis -0.00496123 -0.00336082 -0.99998205
Axis point 141.58666221 140.55425177 0.00000000
Rotation angle (degrees) 174.36874421
Shift along axis 31.54237523
Average map value = 0.5691 for 185 atoms, 28 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.769, correlation about mean = 0.7459, overlap = 65.37
steps = 44, shift = 0.00738, angle = 0.14 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99514876 0.09811330 0.00725767 268.86221067
-0.09806774 -0.99515923 0.00638611 294.31859947
0.00784910 0.00564339 0.99995326 -33.44321532
Axis -0.00378587 -0.00301467 -0.99998829
Axis point 141.73183020 140.59747539 0.00000000
Rotation angle (degrees) 174.37070923
Shift along axis 31.53767366
Average map value = 0.5688 for 185 atoms, 28 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7696, correlation about mean = 0.747, overlap = 65.36
steps = 44, shift = 0.000491, angle = 0.0214 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99514675 0.09810992 0.00757222 268.81860446
-0.09806422 -0.99516085 0.00618573 294.34631098
0.00814246 0.00541315 0.99995219 -33.45295725
Axis -0.00393822 -0.00290675 -0.99998802
Axis point 141.71293975 140.61072439 0.00000000
Rotation angle (degrees) 174.37090615
Shift along axis 31.53829943
Average map value = 0.5691 for 185 atoms, 28 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7688, correlation about mean = 0.7456, overlap = 65.36
steps = 44, shift = 0.00251, angle = 0.0224 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99514765 0.09812302 0.00727757 268.85772792
-0.09807690 -0.99515796 0.00644358 294.31173991
0.00787459 0.00569856 0.99995275 -33.45286293
Axis -0.00379725 -0.00304290 -0.99998816
Axis point 141.73035265 140.59399240 0.00000000
Rotation angle (degrees) 174.37016471
Shift along axis 31.53598744
Average map value = 0.5687 for 185 atoms, 28 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7695, correlation about mean = 0.7464, overlap = 65.42
steps = 44, shift = 0.0145, angle = 0.00517 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99515097 0.09809166 0.00724705 268.86715241
-0.09804633 -0.99516148 0.00636456 294.31909514
0.00783629 0.00562315 0.99995348 -33.45088403
Axis -0.00377999 -0.00300419 -0.99998834
Axis point 141.73262562 140.59890026 0.00000000
Rotation angle (degrees) 174.37194880
Shift along axis 31.54998693
Average map value = 0.5686 for 185 atoms, 28 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7693, correlation about mean = 0.7462, overlap = 65.43
steps = 48, shift = 0.00215, angle = 0.136 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99513122 0.09811510 0.00933999 268.56854405
-0.09804702 -0.99515360 0.00748733 294.16256556
0.01002934 0.00653511 0.99992834 -33.90243556
Axis -0.00485413 -0.00351413 -0.99998204
Axis point 141.59991855 140.53556273 0.00000000
Rotation angle (degrees) 174.37121858
Shift along axis 31.56443533
Average map value = 0.5684 for 185 atoms, 28 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.769, correlation about mean = 0.7458, overlap = 65.41
steps = 48, shift = 0.0035, angle = 0.0382 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99512485 0.09812511 0.00989663 268.48888593
-0.09804952 -0.99515053 0.00785332 294.11177899
0.01061924 0.00684467 0.99992018 -34.02910755
Axis -0.00514147 -0.00368344 -0.99998000
Axis point 141.56466229 140.51455778 0.00000000
Rotation angle (degrees) 174.37084697
Shift along axis 31.56465656
Average map value = 0.5683 for 185 atoms, 28 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7683, correlation about mean = 0.7449, overlap = 65.34
steps = 48, shift = 0.0181, angle = 0.0204 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99511692 0.09817419 0.01020294 268.43699200
-0.09809460 -0.99514470 0.00802772 294.09286115
0.01094152 0.00698766 0.99991571 -34.07830664
Axis -0.00529902 -0.00376299 -0.99997888
Axis point 141.54462633 140.50450100 0.00000000
Rotation angle (degrees) 174.36812986
Shift along axis 31.54846458
Average map value = 0.5684 for 185 atoms, 28 outside contour
> save "/Users/u0159610/SwitchLab Dropbox/brajabandhu
> pradhan/Heterotypic_Abeta_medin_manuscript/Data/Morphology_1_Models/morphology1UNit_corrrectedt-15.pdb"
> models #5 relModel #1
> view matrix models
> #5,-0.99512,0.098174,0.010203,268.28,-0.098095,-0.99514,0.0080277,293.89,0.010942,0.0069877,0.99992,-38.674
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7715, correlation about mean = 0.749, overlap = 66.45
steps = 52, shift = 0.433, angle = 0.861 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99352491 0.11310032 0.01079388 266.04409894
-0.11301968 -0.99356204 0.00780977 296.03282174
0.01160767 0.00653928 0.99991124 -39.02122362
Axis -0.00561853 -0.00359887 -0.99997774
Axis point 141.53004785 140.53656089 0.00000000
Rotation angle (degrees) 173.50811339
Shift along axis 36.46019451
Average map value = 0.5778 for 185 atoms, 30 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7717, correlation about mean = 0.7492, overlap = 66.41
steps = 40, shift = 0.0151, angle = 0.0958 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99353755 0.11311405 0.00939686 266.23936093
-0.11305199 -0.99356515 0.00689287 296.16509821
0.01011607 0.00578599 0.99993208 -38.71144735
Axis -0.00489402 -0.00317995 -0.99998297
Axis point 141.61773631 140.58777500 0.00000000
Rotation angle (degrees) 173.50681994
Shift along axis 36.46601662
Average map value = 0.5772 for 185 atoms, 31 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.772, correlation about mean = 0.75, overlap = 66.45
steps = 44, shift = 0.0145, angle = 0.0825 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99352372 0.11311444 0.01075600 266.04733128
-0.11303915 -0.99356319 0.00736856 296.09723457
0.01152025 0.00610499 0.99991499 -38.94632516
Axis -0.00558710 -0.00337929 -0.99997868
Axis point 141.53368090 140.56318289 0.00000000
Rotation angle (degrees) 173.50715097
Shift along axis 36.45846411
Average map value = 0.5782 for 185 atoms, 30 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7719, correlation about mean = 0.7498, overlap = 66.44
steps = 40, shift = 0.0031, angle = 0.0477 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99353111 0.11312018 0.00998471 266.15495495
-0.11305298 -0.99356389 0.00705612 296.14234325
0.01071863 0.00588167 0.99992525 -38.80109426
Axis -0.00519259 -0.00324491 -0.99998125
Axis point 141.58126187 140.57962111 0.00000000
Rotation angle (degrees) 173.50660323
Shift along axis 36.45737950
Average map value = 0.578 for 185 atoms, 30 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7716, correlation about mean = 0.749, overlap = 66.43
steps = 40, shift = 0.00351, angle = 0.0186 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99353424 0.11311875 0.00968553 266.19744526
-0.11305202 -0.99356311 0.00718041 296.12478689
0.01043543 0.00603901 0.99992730 -38.78635182
Axis -0.00504652 -0.00331554 -0.99998177
Axis point 141.59911283 140.57122273 0.00000000
Rotation angle (degrees) 173.50667581
Shift along axis 36.46046075
Average map value = 0.5775 for 185 atoms, 30 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7716, correlation about mean = 0.749, overlap = 66.41
steps = 48, shift = 0.00913, angle = 0.00451 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99353454 0.11311167 0.00973718 266.19198196
-0.11304525 -0.99356430 0.00712147 296.13262939
0.01048003 0.00597468 0.99992722 -38.79260414
Axis -0.00507066 -0.00328462 -0.99998175
Axis point 141.59653891 140.57514873 0.00000000
Rotation angle (degrees) 173.50707505
Shift along axis 36.46944388
Average map value = 0.5771 for 185 atoms, 31 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7715, correlation about mean = 0.749, overlap = 66.45
steps = 48, shift = 0.0167, angle = 0.0705 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99352547 0.11309833 0.01076397 266.04863167
-0.11301800 -0.99356231 0.00780020 296.03387221
0.01157686 0.00653317 0.99991163 -39.01539252
Axis -0.00560330 -0.00359493 -0.99997784
Axis point 141.53188774 140.53701077 0.00000000
Rotation angle (degrees) 173.50821965
Shift along axis 36.45955536
Average map value = 0.5778 for 185 atoms, 30 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7717, correlation about mean = 0.7491, overlap = 66.41
steps = 40, shift = 0.0141, angle = 0.0693 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99353400 0.11311412 0.00976394 266.18765695
-0.11304755 -0.99356405 0.00712052 296.13290647
0.01050653 0.00597069 0.99992697 -38.79325195
Axis -0.00508402 -0.00328338 -0.99998169
Axis point 141.59482247 140.57521257 0.00000000
Rotation angle (degrees) 173.50693745
Shift along axis 36.46692170
Average map value = 0.5773 for 185 atoms, 30 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7717, correlation about mean = 0.7493, overlap = 66.46
steps = 48, shift = 0.0149, angle = 0.0893 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99351958 0.11311410 0.01113516 265.99414840
-0.11303061 -0.99356038 0.00786191 296.02697393
0.01195275 0.00655235 0.99990709 -39.07171037
Axis -0.00579068 -0.00361523 -0.99997670
Axis point 141.50937010 140.53443996 0.00000000
Rotation angle (degrees) 173.50739413
Shift along axis 36.46030584
Average map value = 0.578 for 185 atoms, 30 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7716, correlation about mean = 0.749, overlap = 66.41
steps = 40, shift = 0.015, angle = 0.111 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99353761 0.11311316 0.00940114 266.23884546
-0.11305011 -0.99356470 0.00698796 296.15158396
0.01013107 0.00588000 0.99993138 -38.72590534
Axis -0.00489885 -0.00322738 -0.99998279
Axis point 141.61717267 140.58205944 0.00000000
Rotation angle (degrees) 173.50689862
Shift along axis 36.46517980
Average map value = 0.5772 for 185 atoms, 30 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7713, correlation about mean = 0.7482, overlap = 66.42
steps = 44, shift = 0.00594, angle = 0.0914 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99352108 0.11314091 0.01072100 266.04712677
-0.11305988 -0.99355687 0.00788459 296.02727712
0.01154399 0.00662140 0.99991143 -39.04330772
Axis -0.00558429 -0.00363824 -0.99997779
Axis point 141.53385997 140.53182912 0.00000000
Rotation angle (degrees) 173.50578429
Shift along axis 36.47973783
Average map value = 0.5765 for 185 atoms, 30 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7714, correlation about mean = 0.7485, overlap = 66.42
steps = 48, shift = 0.00381, angle = 0.0122 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99352218 0.11311148 0.01092764 266.02432250
-0.11302863 -0.99356012 0.00792348 296.01903447
0.01175350 0.00663702 0.99990889 -39.07260003
Axis -0.00568866 -0.00365191 -0.99997715
Axis point 141.52210146 140.53059673 0.00000000
Rotation angle (degrees) 173.50752968
Shift along axis 36.47735108
Average map value = 0.5767 for 185 atoms, 30 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7719, correlation about mean = 0.7498, overlap = 66.44
steps = 40, shift = 0.0115, angle = 0.0218 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99352092 0.11311734 0.01098175 266.01527318
-0.11303858 -0.99356192 0.00754675 296.07251301
0.01176471 0.00625650 0.99991121 -39.00770944
Axis -0.00570504 -0.00346198 -0.99997773
Axis point 141.51961175 140.55323252 0.00000000
Rotation angle (degrees) 173.50707766
Shift along axis 36.46421507
Average map value = 0.5779 for 185 atoms, 29 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7721, correlation about mean = 0.7501, overlap = 66.44
steps = 44, shift = 0.00112, angle = 0.0406 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99352705 0.11311648 0.01042199 266.09420079
-0.11304610 -0.99356427 0.00711176 296.13389545
0.01115937 0.00588756 0.99992039 -38.86582981
Axis -0.00541281 -0.00326034 -0.99998004
Axis point 141.55473396 140.57763473 0.00000000
Rotation angle (degrees) 173.50690045
Shift along axis 36.45923859
Average map value = 0.5782 for 185 atoms, 30 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7716, correlation about mean = 0.7491, overlap = 66.42
steps = 40, shift = 0.0076, angle = 0.0254 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99353203 0.11310971 0.01001269 266.15411826
-0.11303990 -0.99356374 0.00728329 296.10984410
0.01077205 0.00610435 0.99992334 -38.84857416
Axis -0.00521301 -0.00335773 -0.99998077
Axis point 141.57968628 140.56642630 0.00000000
Rotation angle (degrees) 173.50727943
Shift along axis 36.46610727
Average map value = 0.5773 for 185 atoms, 30 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7716, correlation about mean = 0.7489, overlap = 66.41
steps = 48, shift = 0.00758, angle = 0.0154 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99352872 0.11311671 0.01025837 266.11797276
-0.11304419 -0.99356244 0.00739336 296.09475652
0.01102865 0.00618587 0.99992004 -38.90506092
Axis -0.00533899 -0.00340579 -0.99997995
Axis point 141.56427053 140.56041345 0.00000000
Rotation angle (degrees) 173.50694834
Shift along axis 36.47504460
Average map value = 0.5769 for 185 atoms, 31 outside contour
> save "/Users/u0159610/SwitchLab Dropbox/brajabandhu
> pradhan/Heterotypic_Abeta_medin_manuscript/Data/Morphology_1_Models/morphology1UNit_corrrectedt-16.pdb"
> models #5 relModel #1
> view matrix models
> #5,-0.99353,0.11312,0.010258,266.02,-0.11304,-0.99356,0.0073934,295.77,0.011029,0.0061859,0.99992,-43.826
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7719, correlation about mean = 0.7517, overlap = 67.6
steps = 52, shift = 0.326, angle = 1.06 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99129657 0.13081157 0.01481218 262.64455385
-0.13073346 -0.99139860 0.00612719 298.49625284
0.01548628 0.00413741 0.99987151 -44.14452113
Axis -0.00760753 -0.00257729 -0.99996774
Axis point 141.29519367 140.67041972 0.00000000
Rotation angle (degrees) 172.48552102
Shift along axis 41.37570898
Average map value = 0.5905 for 185 atoms, 31 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7709, correlation about mean = 0.7502, overlap = 67.45
steps = 36, shift = 0.0113, angle = 0.0894 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99132584 0.13075443 0.01327803 262.87106313
-0.13068668 -0.99140644 0.00585031 298.52906016
0.01392888 0.00406431 0.99989472 -43.92066297
Axis -0.00683122 -0.00248939 -0.99997357
Axis point 141.38746122 140.68178398 0.00000000
Rotation angle (degrees) 172.48856772
Shift along axis 41.38061643
Average map value = 0.5894 for 185 atoms, 32 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7717, correlation about mean = 0.7514, overlap = 67.58
steps = 44, shift = 0.0112, angle = 0.136 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99128919 0.13078720 0.01550470 262.55076340
-0.13069721 -0.99139977 0.00668534 298.41388376
0.01624571 0.00460069 0.99985744 -44.32112883
Axis -0.00797211 -0.00283376 -0.99996421
Axis point 141.25247282 140.63968624 0.00000000
Rotation angle (degrees) 172.48724576
Shift along axis 41.38082557
Average map value = 0.5902 for 185 atoms, 32 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7718, correlation about mean = 0.7514, overlap = 67.56
steps = 40, shift = 0.0019, angle = 0.113 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99131759 0.13076858 0.01374626 262.80246235
-0.13069992 -0.99140510 0.00578189 298.54022637
0.01438420 0.00393505 0.99988879 -43.95825097
Axis -0.00706313 -0.00243976 -0.99997208
Axis point 141.35975029 140.68732339 0.00000000
Rotation angle (degrees) 172.48776502
Shift along axis 41.37244856
Average map value = 0.5903 for 185 atoms, 31 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7707, correlation about mean = 0.7499, overlap = 67.44
steps = 44, shift = 0.012, angle = 0.0128 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99131977 0.13076235 0.01364764 262.81747019
-0.13069122 -0.99140505 0.00598262 298.51114756
0.01431264 0.00414706 0.99988896 -43.99064036
Axis -0.00702039 -0.00254340 -0.99997212
Axis point 141.36505047 140.67516356 0.00000000
Rotation angle (degrees) 172.48819670
Shift along axis 41.38510053
Average map value = 0.5891 for 185 atoms, 32 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7714, correlation about mean = 0.751, overlap = 67.55
steps = 40, shift = 0.0128, angle = 0.11 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99129462 0.13076562 0.01533890 262.57792939
-0.13067304 -0.99140154 0.00689308 298.38189792
0.01610838 0.00482869 0.99985858 -44.33536806
Axis -0.00789598 -0.00294316 -0.99996450
Axis point 141.26178858 140.62687805 0.00000000
Rotation angle (degrees) 172.48856996
Shift along axis 41.38229705
Average map value = 0.59 for 185 atoms, 32 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7704, correlation about mean = 0.7494, overlap = 67.41
steps = 44, shift = 0.0154, angle = 0.0922 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99131763 0.13075332 0.01388793 262.78495277
-0.13067803 -0.99140546 0.00619924 298.47927189
0.01457914 0.00433057 0.99988433 -44.05824999
Axis -0.00714764 -0.00264386 -0.99997096
Axis point 141.35010565 140.66313878 0.00000000
Rotation angle (degrees) 172.48883017
Shift along axis 41.38953935
Average map value = 0.5888 for 185 atoms, 32 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7704, correlation about mean = 0.7495, overlap = 67.44
steps = 40, shift = 0.00455, angle = 0.105 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99129444 0.13075732 0.01542066 262.56781751
-0.13065915 -0.99140108 0.00721396 298.33558712
0.01623133 0.00513630 0.99985506 -44.40852942
Axis -0.00794738 -0.00310097 -0.99996361
Axis point 141.25603741 140.60831656 0.00000000
Rotation angle (degrees) 172.48920440
Shift along axis 41.39505724
Average map value = 0.5889 for 185 atoms, 33 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7717, correlation about mean = 0.7514, overlap = 67.6
steps = 28, shift = 0.0134, angle = 0.0493 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99124802 0.13101593 0.01619082 262.41588703
-0.13091854 -0.99136883 0.00693875 298.40652208
0.01696016 0.00475835 0.99984483 -44.44538435
Axis -0.00832392 -0.00293703 -0.99996104
Axis point 141.21032482 140.62739506 0.00000000
Rotation angle (degrees) 172.47421619
Shift along axis 41.38289489
Average map value = 0.5903 for 185 atoms, 31 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7716, correlation about mean = 0.7512, overlap = 67.55
steps = 44, shift = 0.00355, angle = 0.112 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99130981 0.13075979 0.01437671 262.71487634
-0.13068168 -0.99140468 0.00624743 298.47306064
0.01507005 0.00431436 0.99987712 -44.11240444
Axis -0.00739364 -0.00265190 -0.99996915
Axis point 141.32091178 140.66188225 0.00000000
Rotation angle (degrees) 172.48852387
Shift along axis 41.37710338
Average map value = 0.5901 for 185 atoms, 31 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7708, correlation about mean = 0.75, overlap = 67.45
steps = 44, shift = 0.0103, angle = 0.032 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99131621 0.13076816 0.01384914 262.78805566
-0.13069501 -0.99140406 0.00606415 298.50025418
0.01452309 0.00420147 0.99988570 -44.02744648
Axis -0.00712384 -0.00257753 -0.99997130
Axis point 141.35281724 140.67100659 0.00000000
Rotation angle (degrees) 172.48791344
Shift along axis 41.38473116
Average map value = 0.5892 for 185 atoms, 32 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7721, correlation about mean = 0.752, overlap = 67.63
steps = 28, shift = 0.0173, angle = 0.0868 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99129070 0.13079890 0.01530822 262.57724543
-0.13071326 -0.99139908 0.00647022 298.44578471
0.01602285 0.00441288 0.99986188 -44.25696106
Axis -0.00786681 -0.00273259 -0.99996532
Axis point 141.26506417 140.65167771 0.00000000
Rotation angle (degrees) 172.48645231
Shift along axis 41.37425052
Average map value = 0.5907 for 185 atoms, 32 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7702, correlation about mean = 0.7492, overlap = 67.4
steps = 44, shift = 0.0219, angle = 0.0372 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99129015 0.13087406 0.01468926 262.65316281
-0.13078836 -0.99138796 0.00665386 298.42882555
0.01543357 0.00467472 0.99986996 -44.23190817
Axis -0.00756346 -0.00284445 -0.99996735
Axis point 141.30145292 140.63858354 0.00000000
Rotation angle (degrees) 172.48212551
Shift along axis 41.39502954
Average map value = 0.5886 for 185 atoms, 33 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7713, correlation about mean = 0.7508, overlap = 67.54
steps = 40, shift = 0.0151, angle = 0.0612 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99129016 0.13076282 0.01564747 262.53473584
-0.13066518 -0.99140103 0.00711081 298.35058538
0.01644275 0.00500429 0.99985228 -44.40997058
Axis -0.00805743 -0.00304193 -0.99996291
Axis point 141.24280654 140.61504985 0.00000000
Rotation angle (degrees) 172.48886603
Shift along axis 41.38540896
Average map value = 0.5898 for 185 atoms, 32 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7708, correlation about mean = 0.75, overlap = 67.46
steps = 44, shift = 0.01, angle = 0.0877 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99130824 0.13077349 0.01436040 262.71491767
-0.13069493 -0.99140271 0.00628243 298.46981539
0.01505851 0.00435099 0.99987714 -44.12594524
Axis -0.00738666 -0.00266988 -0.99996915
Axis point 141.32176607 140.65978259 0.00000000
Rotation angle (degrees) 172.48774514
Shift along axis 41.38711874
Average map value = 0.5892 for 185 atoms, 32 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7714, correlation about mean = 0.7509, overlap = 67.54
steps = 40, shift = 0.00764, angle = 0.0425 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99129820 0.13077169 0.01505290 262.61729208
-0.13068600 -0.99140218 0.00654561 298.43200299
0.01577945 0.00452145 0.99986526 -44.24688038
Axis -0.00774157 -0.00277877 -0.99996617
Axis point 141.27981179 140.64647635 0.00000000
Rotation angle (degrees) 172.48803281
Shift along axis 41.38303819
Average map value = 0.5899 for 185 atoms, 31 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.772, correlation about mean = 0.7517, overlap = 67.59
steps = 44, shift = 0.00565, angle = 0.0568 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99130859 0.13078320 0.01424723 262.72923316
-0.13070983 -0.99140269 0.00596770 298.51537530
0.01490521 0.00405358 0.99988068 -44.04749695
Axis -0.00731975 -0.00251619 -0.99997004
Axis point 141.32935888 140.67789304 0.00000000
Rotation angle (degrees) 172.48704075
Shift along axis 41.37194452
Average map value = 0.5905 for 185 atoms, 31 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7705, correlation about mean = 0.7496, overlap = 67.41
steps = 36, shift = 0.0164, angle = 0.0613 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99132882 0.13074148 0.01318268 262.88658850
-0.13067384 -0.99140801 0.00587031 298.52477512
0.01383690 0.00409677 0.99989586 -43.91608480
Axis -0.00678418 -0.00250256 -0.99997386
Axis point 141.39307204 140.68034265 0.00000000
Rotation angle (degrees) 172.48931499
Shift along axis 41.38439158
Average map value = 0.589 for 185 atoms, 32 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7702, correlation about mean = 0.7492, overlap = 67.41
steps = 40, shift = 0.000607, angle = 0.129 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99130060 0.13075005 0.01508255 262.61662069
-0.13065592 -0.99140255 0.00706966 298.35483579
0.01587724 0.00503754 0.99986125 -44.34607549
Axis -0.00777357 -0.00303993 -0.99996516
Axis point 141.27645763 140.61550150 0.00000000
Rotation angle (degrees) 172.48951973
Shift along axis 41.39608376
Average map value = 0.5887 for 185 atoms, 33 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7706, correlation about mean = 0.7498, overlap = 67.46
steps = 40, shift = 0.0048, angle = 0.0504 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99128494 0.13077097 0.01590798 262.49741950
-0.13066765 -0.99139879 0.00737304 298.31380136
0.01673533 0.00523013 0.99984627 -44.49279156
Axis -0.00819631 -0.00316448 -0.99996140
Axis point 141.22696326 140.60016432 0.00000000
Rotation angle (degrees) 172.48854786
Shift along axis 41.39555559
Average map value = 0.589 for 185 atoms, 32 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7704, correlation about mean = 0.7495, overlap = 67.45
steps = 44, shift = 0.00339, angle = 0.0115 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99128550 0.13077486 0.01584126 262.50531490
-0.13067504 -0.99139921 0.00718404 298.34163428
0.01664451 0.00505137 0.99984870 -44.45709089
Axis -0.00815675 -0.00307214 -0.99996201
Axis point 141.23108813 140.61140051 0.00000000
Rotation angle (degrees) 172.48822630
Shift along axis 41.39766315
Average map value = 0.5889 for 185 atoms, 32 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7716, correlation about mean = 0.7513, overlap = 67.6
steps = 40, shift = 0.0144, angle = 0.0342 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99127264 0.13079879 0.01643693 262.41692804
-0.13069584 -0.99139641 0.00719233 298.34291789
0.01723626 0.00498132 0.99983903 -44.51767258
Axis -0.00845493 -0.00305664 -0.99995958
Axis point 141.19553769 140.61275979 0.00000000
Rotation angle (degrees) 172.48691555
Shift along axis 41.38522759
Average map value = 0.5902 for 185 atoms, 32 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7717, correlation about mean = 0.7513, overlap = 67.55
steps = 36, shift = 0.00336, angle = 0.17 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99131796 0.13076256 0.01377702 262.79921222
-0.13069214 -0.99140545 0.00589567 298.52348338
0.01442954 0.00404393 0.99988770 -43.98091327
Axis -0.00708223 -0.00249567 -0.99997181
Axis point 141.35763528 140.68074453 0.00000000
Rotation angle (degrees) 172.48816176
Shift along axis 41.37345279
Average map value = 0.5902 for 185 atoms, 31 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7715, correlation about mean = 0.751, overlap = 67.52
steps = 40, shift = 0.00301, angle = 0.013 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99132046 0.13076456 0.01357636 262.82735128
-0.13069646 -0.99140550 0.00579014 298.53789807
0.01421682 0.00396550 0.99989106 -43.94173324
Axis -0.00697844 -0.00244948 -0.99997265
Axis point 141.36991844 140.68590893 0.00000000
Rotation angle (degrees) 172.48798544
Shift along axis 41.37514617
Average map value = 0.59 for 185 atoms, 31 outside contour
> fitmap #5 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-0.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 937 points
correlation = 0.7708, correlation about mean = 0.7501, overlap = 67.46
steps = 40, shift = 0.00709, angle = 0.037 degrees
Position of morphology1UNit_corrrectedt-0.pdb map 5 (#6) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99131184 0.13077290 0.01411493 262.74971053
-0.13069743 -0.99140324 0.00614577 298.48920096
0.01479729 0.00424758 0.99988148 -44.07333979
Axis -0.00725943 -0.00260960 -0.99997024
Axis point 141.33676937 140.66706294 0.00000000
Rotation angle (degrees) 172.48769811
Shift along axis 41.38567739
Average map value = 0.5893 for 185 atoms, 33 outside contour
> save "/Users/u0159610/SwitchLab Dropbox/brajabandhu
> pradhan/Heterotypic_Abeta_medin_manuscript/Data/Morphology_1_Models/morphology1UNit_corrrectedt-17.pdb"
> models #5 relModel #1
> close #6-7
> close #5
> hide #!1 models
> show #!1 models
> show #!3 models
> close #3
> open "/Users/u0159610/SwitchLab Dropbox/brajabandhu
> pradhan/Heterotypic_Abeta_medin_manuscript/Data/Morphology_1_Models/morphology1UNit_corrrectedt-1.pdb"
> "/Users/u0159610/SwitchLab Dropbox/brajabandhu
> pradhan/Heterotypic_Abeta_medin_manuscript/Data/Morphology_1_Models/morphology1UNit_corrrectedt-17.pdb"
> "/Users/u0159610/SwitchLab Dropbox/brajabandhu
> pradhan/Heterotypic_Abeta_medin_manuscript/Data/Morphology_1_Models/morphology1UNit_corrrectedt-16.pdb"
> "/Users/u0159610/SwitchLab Dropbox/brajabandhu
> pradhan/Heterotypic_Abeta_medin_manuscript/Data/Morphology_1_Models/morphology1UNit_corrrectedt-15.pdb"
> "/Users/u0159610/SwitchLab Dropbox/brajabandhu
> pradhan/Heterotypic_Abeta_medin_manuscript/Data/Morphology_1_Models/morphology1UNit_corrrectedt-14.pdb"
> "/Users/u0159610/SwitchLab Dropbox/brajabandhu
> pradhan/Heterotypic_Abeta_medin_manuscript/Data/Morphology_1_Models/morphology1UNit_corrrectedt-13.pdb"
> "/Users/u0159610/SwitchLab Dropbox/brajabandhu
> pradhan/Heterotypic_Abeta_medin_manuscript/Data/Morphology_1_Models/morphology1UNit_corrrectedt-12.pdb"
> "/Users/u0159610/SwitchLab Dropbox/brajabandhu
> pradhan/Heterotypic_Abeta_medin_manuscript/Data/Morphology_1_Models/morphology1UNit_corrrectedt-11.pdb"
Chain information for morphology1UNit_corrrectedt-1.pdb #2
---
Chain | Description
M | No description available
Chain information for morphology1UNit_corrrectedt-17.pdb #3
---
Chain | Description
M | No description available
Chain information for morphology1UNit_corrrectedt-16.pdb #4
---
Chain | Description
M | No description available
Chain information for morphology1UNit_corrrectedt-15.pdb #5
---
Chain | Description
M | No description available
Chain information for morphology1UNit_corrrectedt-14.pdb #6
---
Chain | Description
M | No description available
Chain information for morphology1UNit_corrrectedt-13.pdb #7
---
Chain | Description
M | No description available
Chain information for morphology1UNit_corrrectedt-12.pdb #8
---
Chain | Description
M | No description available
Chain information for morphology1UNit_corrrectedt-11.pdb #9
---
Chain | Description
M | No description available
Computing secondary structure
> select add #7
185 atoms, 186 bonds, 26 residues, 1 model selected
> ui mousemode right "translate selected models"
> view matrix models #7,1,0,0,-0.32211,0,1,0,1.0007,0,0,1,-4.7664
Opened morphology1UNit_corrrectedt-13.pdb map 5 as #10, grid size 38,58,22,
pixel 1.67, shown at level 0.0472, step 1, values float32
Opened morphology1UNit_corrrectedt-13.pdb map 5 as #11, grid size 38,58,22,
pixel 1.67, shown at level 0.0472, step 1, values float32
> fitmap #7 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-13.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 935 points
correlation = 0.7667, correlation about mean = 0.7494, overlap = 66.25
steps = 56, shift = 1.1, angle = 1.11 degrees
Position of morphology1UNit_corrrectedt-13.pdb map 5 (#11) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
0.99982688 -0.01858172 -0.00096045 2.75576709
0.01857603 0.99981162 -0.00562624 -1.87490363
0.00106481 0.00560743 0.99998371 -5.76636317
Axis 0.28899498 -0.05210139 0.95591179
Axis point 116.10523427 219.04647692 0.00000000
Rotation angle (degrees) 1.11365718
Shift along axis -4.61804660
Average map value = 0.5732 for 185 atoms, 29 outside contour
> fitmap #7 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-13.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 935 points
correlation = 0.7665, correlation about mean = 0.7492, overlap = 66.25
steps = 40, shift = 0.000847, angle = 0.0164 degrees
Position of morphology1UNit_corrrectedt-13.pdb map 5 (#10) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
0.99982675 -0.01860104 -0.00069283 2.72561026
0.01859693 0.99981178 -0.00552741 -1.88980700
0.00079551 0.00551357 0.99998448 -5.71725381
Axis 0.28433796 -0.03832922 0.95795762
Axis point 113.34939594 216.24076526 0.00000000
Rotation angle (degrees) 1.11248155
Shift along axis -4.62945756
Average map value = 0.5731 for 185 atoms, 29 outside contour
> fitmap #7 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-13.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 935 points
correlation = 0.7666, correlation about mean = 0.7493, overlap = 66.26
steps = 36, shift = 0.000818, angle = 0.0052 degrees
Position of morphology1UNit_corrrectedt-13.pdb map 5 (#10) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
0.99982674 -0.01860202 -0.00067475 2.72431285
0.01859808 0.99981225 -0.00543851 -1.90060473
0.00077580 0.00542501 0.99998498 -5.70252310
Axis 0.28012463 -0.03740361 0.95923467
Axis point 113.68944907 215.20362532 0.00000000
Rotation angle (degrees) 1.11106421
Shift along axis -4.63582128
Average map value = 0.5732 for 185 atoms, 29 outside contour
> fitmap #7 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-13.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 935 points
correlation = 0.7653, correlation about mean = 0.7474, overlap = 66.3
steps = 40, shift = 0.0143, angle = 0.0361 degrees
Position of morphology1UNit_corrrectedt-13.pdb map 5 (#10) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
0.99982746 -0.01857382 -0.00023868 2.66531256
0.01857240 0.99981509 -0.00498506 -1.95220960
0.00033123 0.00497977 0.99998755 -5.59486658
Axis 0.25907045 -0.01481695 0.96574477
Axis point 110.91903289 207.79810313 0.00000000
Rotation angle (degrees) 1.10197492
Shift along axis -4.68378362
Average map value = 0.5718 for 185 atoms, 29 outside contour
> fitmap #7 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-13.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 935 points
correlation = 0.7652, correlation about mean = 0.7473, overlap = 66.31
steps = 48, shift = 0.00063, angle = 0.00236 degrees
Position of morphology1UNit_corrrectedt-13.pdb map 5 (#10) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
0.99982741 -0.01857588 -0.00027989 2.67096921
0.01857425 0.99981506 -0.00498521 -1.95238042
0.00037245 0.00497915 0.99998753 -5.60100578
Axis 0.25902464 -0.01695769 0.96572184
Axis point 111.46030263 208.06656158 0.00000000
Rotation angle (degrees) 1.10211714
Shift along axis -4.68405890
Average map value = 0.5718 for 185 atoms, 29 outside contour
> fitmap #7 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-13.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 935 points
correlation = 0.7662, correlation about mean = 0.7488, overlap = 66.26
steps = 60, shift = 0.0119, angle = 0.0191 degrees
Position of morphology1UNit_corrrectedt-13.pdb map 5 (#10) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
0.99982706 -0.01859416 -0.00032609 2.67942523
0.01859217 0.99981303 -0.00531415 -1.91500781
0.00042484 0.00530717 0.99998583 -5.64086636
Axis 0.27458950 -0.01941333 0.96136555
Axis point 109.98560470 211.74657183 0.00000000
Rotation angle (degrees) 1.10819059
Shift along axis -4.65001592
Average map value = 0.5728 for 185 atoms, 29 outside contour
> fitmap #7 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-13.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 935 points
correlation = 0.7653, correlation about mean = 0.7475, overlap = 66.3
steps = 40, shift = 0.0105, angle = 0.0165 degrees
Position of morphology1UNit_corrrectedt-13.pdb map 5 (#10) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
0.99982758 -0.01856058 -0.00055342 2.70227546
0.01855749 0.99981458 -0.00514070 -1.93104753
0.00064873 0.00512954 0.99998663 -5.65827226
Axis 0.26654165 -0.03119922 0.96331831
Axis point 114.02343212 211.60000464 0.00000000
Rotation angle (degrees) 1.10391377
Shift along axis -4.67020111
Average map value = 0.5719 for 185 atoms, 29 outside contour
> fitmap #7 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-13.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 935 points
correlation = 0.7665, correlation about mean = 0.7492, overlap = 66.23
steps = 44, shift = 0.0144, angle = 0.0261 degrees
Position of morphology1UNit_corrrectedt-13.pdb map 5 (#10) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
0.99982481 -0.01871580 -0.00024591 2.68676090
0.01871419 0.99981008 -0.00543986 -1.91635917
0.00034768 0.00543431 0.99998517 -5.64354822
Axis 0.27895306 -0.01522721 0.96018400
Axis point 108.32550817 211.70226901 0.00000000
Rotation angle (degrees) 1.11682551
Shift along axis -4.64018376
Average map value = 0.573 for 185 atoms, 29 outside contour
> fitmap #7 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-13.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 935 points
correlation = 0.7651, correlation about mean = 0.747, overlap = 66.3
steps = 28, shift = 0.0172, angle = 0.0284 degrees
Position of morphology1UNit_corrrectedt-13.pdb map 5 (#10) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
0.99982741 -0.01856611 -0.00066920 2.71721649
0.01856236 0.99981404 -0.00522815 -1.92112331
0.00076614 0.00521483 0.99998611 -5.68878950
Axis 0.27057263 -0.03718901 0.96198099
Axis point 114.98027260 213.28251969 0.00000000
Rotation angle (degrees) 1.10575797
Shift along axis -4.66585827
Average map value = 0.5716 for 185 atoms, 29 outside contour
> fitmap #7 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-13.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 935 points
correlation = 0.7665, correlation about mean = 0.7493, overlap = 66.3
steps = 44, shift = 0.0138, angle = 0.0183 degrees
Position of morphology1UNit_corrrectedt-13.pdb map 5 (#10) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
0.99982543 -0.01867922 -0.00043932 2.70511306
0.01867677 0.99981289 -0.00503688 -1.96066478
0.00053332 0.00502780 0.99998722 -5.61748852
Axis 0.26006732 -0.02513265 0.96526335
Axis point 113.35405405 208.77355803 0.00000000
Rotation angle (degrees) 1.10875138
Shift along axis -4.66956761
Average map value = 0.5731 for 185 atoms, 29 outside contour
> fitmap #7 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-13.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 935 points
correlation = 0.7648, correlation about mean = 0.7465, overlap = 66.27
steps = 28, shift = 0.0135, angle = 0.0267 degrees
Position of morphology1UNit_corrrectedt-13.pdb map 5 (#10) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
0.99982959 -0.01845415 -0.00047803 2.67940952
0.01845127 0.99981494 -0.00544367 -1.87959957
0.00057840 0.00543392 0.99998507 -5.69226388
Axis 0.28261134 -0.02744710 0.95884174
Axis point 110.94415974 215.36672422 0.00000000
Rotation angle (degrees) 1.10271341
Shift along axis -4.64915915
Average map value = 0.5713 for 185 atoms, 29 outside contour
> fitmap #7 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-13.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 935 points
correlation = 0.7666, correlation about mean = 0.7494, overlap = 66.26
steps = 36, shift = 0.0162, angle = 0.0192 degrees
Position of morphology1UNit_corrrectedt-13.pdb map 5 (#10) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
0.99982669 -0.01861518 -0.00026893 2.67646179
0.01861352 0.99981303 -0.00523777 -1.92687466
0.00036638 0.00523186 0.99998625 -5.61931775
Axis 0.27068649 -0.01642542 0.96252742
Axis point 109.73936616 210.41120950 0.00000000
Rotation angle (degrees) 1.10811403
Shift along axis -4.65261560
Average map value = 0.5732 for 185 atoms, 29 outside contour
> fitmap #7 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-13.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 935 points
correlation = 0.7654, correlation about mean = 0.7475, overlap = 66.3
steps = 40, shift = 0.0135, angle = 0.0116 degrees
Position of morphology1UNit_corrrectedt-13.pdb map 5 (#10) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
0.99982752 -0.01856844 -0.00038951 2.68320901
0.01856623 0.99981472 -0.00508159 -1.93938707
0.00048380 0.00507349 0.99998701 -5.62754483
Axis 0.26371296 -0.02267864 0.96433456
Axis point 112.26291416 209.85988099 0.00000000
Rotation angle (degrees) 1.10324326
Shift along axis -4.67525633
Average map value = 0.5719 for 185 atoms, 29 outside contour
> fitmap #7 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-13.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 935 points
correlation = 0.7657, correlation about mean = 0.748, overlap = 66.3
steps = 44, shift = 0.00476, angle = 0.00547 degrees
Position of morphology1UNit_corrrectedt-13.pdb map 5 (#10) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
0.99982670 -0.01861111 -0.00043722 2.69718642
0.01860861 0.99981357 -0.00515241 -1.93852267
0.00053303 0.00514339 0.99998663 -5.64016841
Axis 0.26652559 -0.02511664 0.96350052
Axis point 112.58325199 210.70660077 0.00000000
Rotation angle (degrees) 1.10672774
Shift along axis -4.66674682
Average map value = 0.5723 for 185 atoms, 29 outside contour
> fitmap #7 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-13.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 935 points
correlation = 0.765, correlation about mean = 0.747, overlap = 66.31
steps = 48, shift = 0.00855, angle = 0.0105 degrees
Position of morphology1UNit_corrrectedt-13.pdb map 5 (#10) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
0.99982812 -0.01853335 -0.00049173 2.69070805
0.01853067 0.99981581 -0.00499534 -1.94501655
0.00058421 0.00498536 0.99998740 -5.63374945
Axis 0.25991819 -0.02801971 0.96522403
Axis point 114.12999287 209.81311501 0.00000000
Rotation angle (degrees) 1.10012914
Shift along axis -4.68396757
Average map value = 0.5716 for 185 atoms, 29 outside contour
> fitmap #7 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-13.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 935 points
correlation = 0.7649, correlation about mean = 0.7468, overlap = 66.32
steps = 48, shift = 0.00361, angle = 0.00727 degrees
Position of morphology1UNit_corrrectedt-13.pdb map 5 (#10) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
0.99982986 -0.01843754 -0.00055592 2.68594532
0.01843457 0.99981785 -0.00494223 -1.93544577
0.00064694 0.00493114 0.99998763 -5.63690048
Axis 0.25853242 -0.03149651 0.96548897
Axis point 115.07627762 210.33756667 0.00000000
Rotation angle (degrees) 1.09413218
Shift along axis -4.68700154
Average map value = 0.5715 for 185 atoms, 29 outside contour
> fitmap #7 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-13.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 935 points
correlation = 0.7663, correlation about mean = 0.7489, overlap = 66.25
steps = 64, shift = 0.0179, angle = 0.0325 degrees
Position of morphology1UNit_corrrectedt-13.pdb map 5 (#10) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
0.99982702 -0.01859887 -0.00012875 2.65522041
0.01859793 0.99981311 -0.00527769 -1.91982608
0.00022688 0.00527439 0.99998606 -5.60783539
Axis 0.27290191 -0.00919754 0.96199790
Axis point 107.63931195 210.02698977 0.00000000
Rotation angle (degrees) 1.10777387
Shift along axis -4.65245342
Average map value = 0.5728 for 185 atoms, 29 outside contour
> fitmap #7 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-13.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 935 points
correlation = 0.7665, correlation about mean = 0.7493, overlap = 66.24
steps = 36, shift = 0.00319, angle = 0.0123 degrees
Position of morphology1UNit_corrrectedt-13.pdb map 5 (#10) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
0.99982528 -0.01868985 -0.00030141 2.69109221
0.01868796 0.99981096 -0.00536751 -1.92089489
0.00040167 0.00536094 0.99998555 -5.64141313
Axis 0.27584271 -0.01807700 0.96103279
Axis point 109.42012788 211.51255564 0.00000000
Rotation angle (degrees) 1.11428340
Shift along axis -4.64454079
Average map value = 0.5731 for 185 atoms, 29 outside contour
> fitmap #7 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-13.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 935 points
correlation = 0.7656, correlation about mean = 0.7479, overlap = 66.33
steps = 28, shift = 0.0135, angle = 0.0321 degrees
Position of morphology1UNit_corrrectedt-13.pdb map 5 (#10) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
0.99982771 -0.01855959 -0.00030450 2.67199497
0.01855791 0.99981616 -0.00482179 -1.97014532
0.00039393 0.00481531 0.99998833 -5.57974647
Axis 0.25126382 -0.01820971 0.96774733
Axis point 112.81166032 206.44970066 0.00000000
Rotation angle (degrees) 1.09884398
Shift along axis -4.69253332
Average map value = 0.5721 for 185 atoms, 29 outside contour
> fitmap #7 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-13.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 935 points
correlation = 0.7654, correlation about mean = 0.7476, overlap = 66.31
steps = 48, shift = 0.000261, angle = 0.0106 degrees
Position of morphology1UNit_corrrectedt-13.pdb map 5 (#10) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
0.99982728 -0.01858263 -0.00030562 2.67515458
0.01858087 0.99981483 -0.00500484 -1.95099660
0.00039857 0.00499829 0.99998743 -5.60514172
Axis 0.25987119 -0.01829427 0.96546998
Axis point 111.68538656 208.37984967 0.00000000
Rotation angle (degrees) 1.10280132
Shift along axis -4.68070841
Average map value = 0.572 for 185 atoms, 29 outside contour
> fitmap #7 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-13.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 935 points
correlation = 0.7653, correlation about mean = 0.7474, overlap = 66.3
steps = 44, shift = 0.00118, angle = 0.00562 degrees
Position of morphology1UNit_corrrectedt-13.pdb map 5 (#10) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
0.99982779 -0.01855430 -0.00035858 2.67704581
0.01855224 0.99981498 -0.00508231 -1.93737815
0.00045281 0.00507478 0.99998702 -5.62397601
Axis 0.26395664 -0.02108604 0.96430403
Axis point 111.83460530 209.76169767 0.00000000
Rotation angle (degrees) 1.10244233
Shift along axis -4.67574711
Average map value = 0.5718 for 185 atoms, 29 outside contour
> fitmap #7 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-13.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 935 points
correlation = 0.7657, correlation about mean = 0.748, overlap = 66.29
steps = 44, shift = 0.00456, angle = 0.00902 degrees
Position of morphology1UNit_corrrectedt-13.pdb map 5 (#10) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
0.99982988 -0.01844332 -0.00024950 2.64852656
0.01844181 0.99981689 -0.00510655 -1.91942515
0.00034364 0.00510108 0.99998693 -5.60789412
Axis 0.26668420 -0.01549650 0.96365938
Axis point 110.08852110 210.08630576 0.00000000
Rotation angle (degrees) 1.09659659
Shift along axis -4.66803522
Average map value = 0.5723 for 185 atoms, 29 outside contour
> fitmap #7 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-13.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 935 points
correlation = 0.7668, correlation about mean = 0.7498, overlap = 66.25
steps = 44, shift = 0.0129, angle = 0.0163 degrees
Position of morphology1UNit_corrrectedt-13.pdb map 5 (#10) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
0.99982619 -0.01864108 -0.00030791 2.68645581
0.01863919 0.99981222 -0.00530172 -1.92237710
0.00040668 0.00529505 0.99998590 -5.63048190
Axis 0.27336872 -0.01843441 0.96173266
Axis point 109.85832243 211.21148827 0.00000000
Rotation angle (degrees) 1.11056636
Shift along axis -4.64518748
Average map value = 0.5734 for 185 atoms, 29 outside contour
> fitmap #7 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-13.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 935 points
correlation = 0.7656, correlation about mean = 0.7479, overlap = 66.33
steps = 28, shift = 0.0164, angle = 0.0274 degrees
Position of morphology1UNit_corrrectedt-13.pdb map 5 (#10) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
0.99982707 -0.01858489 -0.00065507 2.71805464
0.01858140 0.99981496 -0.00497766 -1.95402146
0.00074745 0.00496463 0.99998740 -5.64894959
Axis 0.25824996 -0.03643035 0.96539100
Axis point 116.42950310 210.20378158 0.00000000
Rotation angle (degrees) 1.10297434
Shift along axis -4.68032191
Average map value = 0.5722 for 185 atoms, 29 outside contour
> fitmap #7 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-13.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 935 points
correlation = 0.7655, correlation about mean = 0.7478, overlap = 66.31
steps = 60, shift = 0.00128, angle = 0.0155 degrees
Position of morphology1UNit_corrrectedt-13.pdb map 5 (#10) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
0.99982763 -0.01856229 -0.00039408 2.68299887
0.01856007 0.99981503 -0.00504214 -1.94343366
0.00048760 0.00503395 0.99998721 -5.62116856
Axis 0.26188233 -0.02291522 0.96482772
Axis point 112.57159427 209.46947180 0.00000000
Rotation angle (degrees) 1.10231393
Shift along axis -4.67629504
Average map value = 0.5721 for 185 atoms, 29 outside contour
> fitmap #7 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-13.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 935 points
correlation = 0.7653, correlation about mean = 0.7473, overlap = 66.28
steps = 44, shift = 0.00145, angle = 0.0167 degrees
Position of morphology1UNit_corrrectedt-13.pdb map 5 (#10) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
0.99982806 -0.01854265 -0.00012217 2.64830006
0.01854178 0.99981484 -0.00514577 -1.92883525
0.00021757 0.00514262 0.99998675 -5.59909258
Axis 0.26732349 -0.00882742 0.96356641
Axis point 108.33830056 209.14511033 0.00000000
Rotation angle (degrees) 1.10262896
Shift along axis -4.67011807
Average map value = 0.5718 for 185 atoms, 29 outside contour
> fitmap #7 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-13.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 935 points
correlation = 0.7652, correlation about mean = 0.7473, overlap = 66.3
steps = 44, shift = 0.00261, angle = 0.00977 degrees
Position of morphology1UNit_corrrectedt-13.pdb map 5 (#10) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
0.99982729 -0.01858401 -0.00015909 2.65722322
0.01858299 0.99981490 -0.00498444 -1.95362071
0.00025169 0.00498062 0.99998756 -5.58402025
Axis 0.25895432 -0.01067469 0.96583058
Axis point 109.88455156 207.23484921 0.00000000
Rotation angle (degrees) 1.10249353
Shift along axis -4.68426380
Average map value = 0.5717 for 185 atoms, 29 outside contour
> fitmap #7 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-13.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 935 points
correlation = 0.7667, correlation about mean = 0.7495, overlap = 66.24
steps = 48, shift = 0.0165, angle = 0.0264 degrees
Position of morphology1UNit_corrrectedt-13.pdb map 5 (#10) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
0.99982658 -0.01862024 -0.00032098 2.68258555
0.01861823 0.99981200 -0.00541480 -1.90644765
0.00042175 0.00540788 0.99998529 -5.64902585
Axis 0.27903269 -0.01914924 0.96009066
Axis point 109.31400094 212.56079530 0.00000000
Rotation angle (degrees) 1.11121832
Shift along axis -4.63854085
Average map value = 0.5732 for 185 atoms, 29 outside contour
> fitmap #7 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-13.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 935 points
correlation = 0.7656, correlation about mean = 0.7479, overlap = 66.3
steps = 28, shift = 0.0126, angle = 0.0225 degrees
Position of morphology1UNit_corrrectedt-13.pdb map 5 (#10) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
0.99982697 -0.01858935 -0.00068137 2.72226990
0.01858551 0.99981343 -0.00526171 -1.92054237
0.00077906 0.00524814 0.99998592 -5.68933931
Axis 0.27185655 -0.03777672 0.96159604
Axis point 114.94689108 213.49590113 0.00000000
Rotation angle (degrees) 1.10758338
Shift along axis -4.65822744
Average map value = 0.5722 for 185 atoms, 29 outside contour
> style sel stick
Changed 185 atom styles
> style sel stick
Changed 185 atom styles
> hide sel atoms
> show sel atoms
> hide sel cartoons
> fitmap #7 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-13.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 935 points
correlation = 0.765, correlation about mean = 0.7469, overlap = 66.27
steps = 48, shift = 0.00362, angle = 0.026 degrees
Position of morphology1UNit_corrrectedt-13.pdb map 5 (#10) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
0.99983086 -0.01838953 -0.00027530 2.64511899
0.01838782 0.99981697 -0.00528301 -1.89053085
0.00037240 0.00527706 0.99998601 -5.64061933
Axis 0.27594394 -0.01692499 0.96102471
Axis point 109.22013791 212.74245256 0.00000000
Rotation angle (degrees) 1.09638976
Shift along axis -4.65887275
Average map value = 0.5716 for 185 atoms, 29 outside contour
> fitmap #7 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-13.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 935 points
correlation = 0.7655, correlation about mean = 0.7477, overlap = 66.3
steps = 40, shift = 0.00266, angle = 0.0137 degrees
Position of morphology1UNit_corrrectedt-13.pdb map 5 (#10) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
0.99982934 -0.01847239 -0.00024099 2.65229082
0.01847094 0.99981659 -0.00506060 -1.92924987
0.00033443 0.00505529 0.99998717 -5.60265192
Axis 0.26407005 -0.01502100 0.96438653
Axis point 110.32768940 209.37519060 0.00000000
Rotation angle (degrees) 1.09749883
Shift along axis -4.67375221
Average map value = 0.572 for 185 atoms, 29 outside contour
> fitmap #7 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-13.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 935 points
correlation = 0.7669, correlation about mean = 0.75, overlap = 66.3
steps = 44, shift = 0.0132, angle = 0.0119 degrees
Position of morphology1UNit_corrrectedt-13.pdb map 5 (#10) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
0.99982584 -0.01866038 -0.00028300 2.68147870
0.01865874 0.99981350 -0.00498194 -1.96540373
0.00037591 0.00497579 0.99998755 -5.58465357
Axis 0.25776923 -0.01705693 0.96605594
Axis point 111.67442851 207.17186729 0.00000000
Rotation angle (degrees) 1.10674778
Shift along axis -4.67036131
Average map value = 0.5735 for 185 atoms, 29 outside contour
> fitmap #7 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-13.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 935 points
correlation = 0.7655, correlation about mean = 0.7477, overlap = 66.31
steps = 28, shift = 0.0139, angle = 0.0106 degrees
Position of morphology1UNit_corrrectedt-13.pdb map 5 (#10) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
0.99982717 -0.01858597 -0.00042657 2.69068456
0.01858357 0.99981445 -0.00507061 -1.94353852
0.00052073 0.00506181 0.99998705 -5.63007317
Axis 0.26292380 -0.02458120 0.96450342
Axis point 112.86277359 209.85444386 0.00000000
Rotation angle (degrees) 1.10408631
Shift along axis -4.67500527
Average map value = 0.5721 for 185 atoms, 29 outside contour
> fitmap #7 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-13.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 935 points
correlation = 0.7661, correlation about mean = 0.7487, overlap = 66.26
steps = 44, shift = 0.00877, angle = 0.0176 degrees
Position of morphology1UNit_corrrectedt-13.pdb map 5 (#10) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
0.99982643 -0.01862921 -0.00026377 2.67726022
0.01862754 0.99981229 -0.00532837 -1.91847052
0.00036298 0.00532253 0.99998577 -5.63487308
Axis 0.27483104 -0.01617233 0.96135652
Axis point 109.15767797 211.30045601 0.00000000
Rotation angle (degrees) 1.11029996
Shift along axis -4.65030159
Average map value = 0.5727 for 185 atoms, 29 outside contour
> fitmap #7 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-13.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 935 points
correlation = 0.7652, correlation about mean = 0.7473, overlap = 66.31
steps = 44, shift = 0.0122, angle = 0.0229 degrees
Position of morphology1UNit_corrrectedt-13.pdb map 5 (#10) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
0.99982777 -0.01854992 -0.00057764 2.70364492
0.01854674 0.99981502 -0.00509451 -1.93526352
0.00067203 0.00508292 0.99998686 -5.65725892
Axis 0.26443311 -0.03246937 0.96385729
Axis point 114.63744033 211.32869188 0.00000000
Rotation angle (degrees) 1.10265991
Shift along axis -4.67502019
Average map value = 0.5717 for 185 atoms, 29 outside contour
> fitmap #7 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-13.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 935 points
correlation = 0.7664, correlation about mean = 0.7491, overlap = 66.25
steps = 40, shift = 0.0148, angle = 0.0211 degrees
Position of morphology1UNit_corrrectedt-13.pdb map 5 (#10) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
0.99982662 -0.01861706 -0.00037946 2.68926053
0.01861474 0.99981216 -0.00539782 -1.90790437
0.00047988 0.00538982 0.99998536 -5.65751373
Axis 0.27822794 -0.02216343 0.96025934
Axis point 110.16878053 212.80157414 0.00000000
Rotation angle (degrees) 1.11082426
Shift along axis -4.64216727
Average map value = 0.573 for 185 atoms, 29 outside contour
> fitmap #7 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-13.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 935 points
correlation = 0.7666, correlation about mean = 0.7493, overlap = 66.26
steps = 36, shift = 0.00127, angle = 0.0112 degrees
Position of morphology1UNit_corrrectedt-13.pdb map 5 (#10) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
0.99982668 -0.01860872 -0.00057440 2.71289734
0.01860534 0.99981227 -0.00540926 -1.90515226
0.00067495 0.00539764 0.99998520 -5.68476450
Axis 0.27873237 -0.03222332 0.95982807
Axis point 112.59380150 214.22088613 0.00000000
Rotation angle (degrees) 1.11079366
Shift along axis -4.63883389
Average map value = 0.5731 for 185 atoms, 29 outside contour
> fitmap #7 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-13.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 935 points
correlation = 0.7666, correlation about mean = 0.7494, overlap = 66.26
steps = 40, shift = 0.00139, angle = 0.027 degrees
Position of morphology1UNit_corrrectedt-13.pdb map 5 (#10) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
0.99982695 -0.01860224 -0.00015237 2.65918117
0.01860119 0.99981345 -0.00520126 -1.93001873
0.00024910 0.00519753 0.99998646 -5.59832625
Axis 0.26917924 -0.01039218 0.96303403
Axis point 108.45783392 209.30725652 0.00000000
Rotation angle (degrees) 1.10677930
Shift along axis -4.65552522
Average map value = 0.5731 for 185 atoms, 29 outside contour
> fitmap #7 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-13.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 935 points
correlation = 0.7657, correlation about mean = 0.748, overlap = 66.3
steps = 28, shift = 0.0108, angle = 0.0272 degrees
Position of morphology1UNit_corrrectedt-13.pdb map 5 (#10) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
0.99982757 -0.01855924 -0.00062269 2.70969491
0.01855579 0.99981457 -0.00514900 -1.92999004
0.00071814 0.00513656 0.99998655 -5.66568244
Axis 0.26689941 -0.03479303 0.96309613
Axis point 114.87849569 212.03997166 0.00000000
Rotation angle (degrees) 1.10407783
Shift along axis -4.66623063
Average map value = 0.5723 for 185 atoms, 29 outside contour
> fitmap #7 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-13.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 935 points
correlation = 0.7655, correlation about mean = 0.7476, overlap = 66.27
steps = 44, shift = 0.000448, angle = 0.0168 degrees
Position of morphology1UNit_corrrectedt-13.pdb map 5 (#10) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
0.99982884 -0.01849497 -0.00047971 2.68359563
0.01849211 0.99981444 -0.00539764 -1.89095318
0.00057945 0.00538784 0.99998532 -5.68024092
Axis 0.27983652 -0.02748087 0.95965427
Axis point 111.31624296 214.39673735 0.00000000
Rotation angle (degrees) 1.10421772
Shift along axis -4.64813439
Average map value = 0.572 for 185 atoms, 29 outside contour
> fitmap #7 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-13.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 935 points
correlation = 0.7654, correlation about mean = 0.7476, overlap = 66.31
steps = 48, shift = 0.00279, angle = 0.0239 degrees
Position of morphology1UNit_corrrectedt-13.pdb map 5 (#10) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
0.99982733 -0.01857958 -0.00034519 2.67959664
0.01857762 0.99981486 -0.00501251 -1.94963781
0.00043826 0.00500523 0.99998738 -5.61155085
Axis 0.26025595 -0.02035365 0.96532511
Axis point 112.15308101 208.73478575 0.00000000
Rotation angle (degrees) 1.10277975
Shift along axis -4.67990770
Average map value = 0.572 for 185 atoms, 29 outside contour
> fitmap #7 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-13.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 935 points
correlation = 0.7662, correlation about mean = 0.7488, overlap = 66.27
steps = 40, shift = 0.00871, angle = 0.0142 degrees
Position of morphology1UNit_corrrectedt-13.pdb map 5 (#10) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
0.99982825 -0.01852843 -0.00041020 2.68030961
0.01852602 0.99981461 -0.00524654 -1.91401148
0.00050733 0.00523804 0.99998615 -5.64395581
Axis 0.27218466 -0.02381960 0.96195017
Axis point 111.42009132 211.99539254 0.00000000
Rotation angle (degrees) 1.10358866
Shift along axis -4.65407414
Average map value = 0.5728 for 185 atoms, 29 outside contour
> fitmap #7 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-13.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 935 points
correlation = 0.7667, correlation about mean = 0.7496, overlap = 66.23
steps = 48, shift = 0.00681, angle = 0.0128 degrees
Position of morphology1UNit_corrrectedt-13.pdb map 5 (#10) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
0.99982652 -0.01862274 -0.00033732 2.68512474
0.01862063 0.99981185 -0.00543533 -1.90439842
0.00043848 0.00542811 0.99998517 -5.65345130
Axis 0.27996280 -0.01999304 0.95980264
Axis point 109.40258500 212.86674545 0.00000000
Rotation angle (degrees) 1.11169837
Shift along axis -4.63638774
Average map value = 0.5732 for 185 atoms, 29 outside contour
> fitmap #7 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-13.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 935 points
correlation = 0.7657, correlation about mean = 0.748, overlap = 66.29
steps = 28, shift = 0.0126, angle = 0.0215 degrees
Position of morphology1UNit_corrrectedt-13.pdb map 5 (#10) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
0.99982715 -0.01858013 -0.00067373 2.71962956
0.01857633 0.99981354 -0.00527354 -1.91799975
0.00077159 0.00526011 0.99998587 -5.68934090
Axis 0.27255524 -0.03739716 0.96141307
Axis point 114.76883287 213.61711452 0.00000000
Rotation angle (degrees) 1.10724573
Shift along axis -4.65682968
Average map value = 0.5723 for 185 atoms, 29 outside contour
> fitmap #7 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-13.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 935 points
correlation = 0.7661, correlation about mean = 0.7486, overlap = 66.27
steps = 40, shift = 0.00469, angle = 0.00571 degrees
Position of morphology1UNit_corrrectedt-13.pdb map 5 (#10) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
0.99982693 -0.01859407 -0.00060457 2.71353216
0.01859058 0.99981290 -0.00534398 -1.91139375
0.00070382 0.00533181 0.99998554 -5.68502395
Axis 0.27579649 -0.03380058 0.96062158
Axis point 113.41825141 213.82359027 0.00000000
Rotation angle (degrees) 1.10899903
Shift along axis -4.64816780
Average map value = 0.5727 for 185 atoms, 29 outside contour
> fitmap #7 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-13.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 935 points
correlation = 0.7651, correlation about mean = 0.747, overlap = 66.27
steps = 40, shift = 0.00819, angle = 0.0117 degrees
Position of morphology1UNit_corrrectedt-13.pdb map 5 (#10) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
0.99982880 -0.01849851 -0.00042818 2.67910523
0.01849594 0.99981446 -0.00538003 -1.89345310
0.00052762 0.00537119 0.99998544 -5.67416129
Axis 0.27898522 -0.02480210 0.95997505
Axis point 110.75670628 213.97223656 0.00000000
Rotation angle (degrees) 1.10406865
Shift along axis -4.65266091
Average map value = 0.5716 for 185 atoms, 29 outside contour
> fitmap #7 inMap #1 resolution 5
Fit map morphology1UNit_corrrectedt-13.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 935 points
correlation = 0.7665, correlation about mean = 0.7492, overlap = 66.25
steps = 36, shift = 0.0131, angle = 0.0127 degrees
Position of morphology1UNit_corrrectedt-13.pdb map 5 (#10) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
0.99982636 -0.01863277 -0.00026188 2.67733643
0.01863111 0.99981226 -0.00532304 -1.91922242
0.00036102 0.00531724 0.99998580 -5.63076750
Axis 0.27452962 -0.01607150 0.96144433
Axis point 109.14875392 211.15207095 0.00000000
Rotation angle (degrees) 1.11041087
Shift along axis -4.64781653
Average map value = 0.573 for 185 atoms, 29 outside contour
> save "/Users/u0159610/SwitchLab Dropbox/brajabandhu
> pradhan/Heterotypic_Abeta_medin_manuscript/Data/Morphology_1_Models/morphology1UNit_corrrectedt-18.pdb"
> models #7 relModel #1
> close #2-9#10-11
> open "/Users/u0159610/SwitchLab Dropbox/brajabandhu
> pradhan/Heterotypic_Abeta_medin_manuscript/Data/Morphology_1_Models/morphology1_protofibril_1.pdb"
Chain information for morphology1_protofibril_1.pdb #2
---
Chain | Description
A B C D E F G M | No description available
> show atoms
> style stick
Changed 1480 atom styles
> select add #2
1480 atoms, 1488 bonds, 208 residues, 1 model selected
> ui mousemode right "rotate selected models"
> view matrix models
> #2,-0.99712,0.011368,-0.075002,284.09,-0.012056,-0.99989,0.0087208,277.74,-0.074895,0.0095999,0.99715,9.3875
> ui mousemode right "translate selected models"
> view matrix models
> #2,-0.99712,0.011368,-0.075002,290.59,-0.012056,-0.99989,0.0087208,283.16,-0.074895,0.0095999,0.99715,9.6066
Opened morphology1_protofibril_1.pdb map 5 as #3, grid size 41,59,42, pixel
1.67, shown at level 0.0872, step 1, values float32
Opened morphology1_protofibril_1.pdb map 5 as #4, grid size 41,59,42, pixel
1.67, shown at level 0.0872, step 1, values float32
> fitmap #2 inMap #1 resolution 5
Fit map morphology1_protofibril_1.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 5811 points
correlation = 0.7421, correlation about mean = 0.7363, overlap = 541.4
steps = 80, shift = 2.55, angle = 4.2 degrees
Position of morphology1_protofibril_1.pdb map 5 (#4) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99995626 -0.00781806 -0.00513678 286.10152571
0.00782294 -0.99996898 -0.00093033 280.91408265
-0.00512935 -0.00097048 0.99998640 3.37116897
Axis -0.00256655 -0.00047517 0.99999659
Axis point 142.50585215 141.01723168 0.00000000
Rotation angle (degrees) 179.55191207
Shift along axis 2.50338328
Average map value = 0.578 for 1480 atoms, 249 outside contour
> fitmap #2 inMap #1 resolution 5
Fit map morphology1_protofibril_1.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 5811 points
correlation = 0.7421, correlation about mean = 0.7362, overlap = 540.6
steps = 40, shift = 0.0117, angle = 0.00481 degrees
Position of morphology1_protofibril_1.pdb map 5 (#3) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99995625 -0.00780104 -0.00516443 286.10308444
0.00780634 -0.99996904 -0.00100774 280.92597963
-0.00515641 -0.00104801 0.99998618 3.39716076
Axis -0.00258023 -0.00051390 0.99999654
Axis point 142.50784539 141.02205278 0.00000000
Rotation angle (degrees) 179.55287534
Shift along axis 2.51456918
Average map value = 0.5775 for 1480 atoms, 248 outside contour
> fitmap #2 inMap #1 resolution 5
Fit map morphology1_protofibril_1.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 5811 points
correlation = 0.7421, correlation about mean = 0.7363, overlap = 540.4
steps = 36, shift = 0.00142, angle = 0.0142 degrees
Position of morphology1_protofibril_1.pdb map 5 (#3) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99995674 -0.00781719 -0.00504326 286.09077048
0.00782345 -0.99996866 -0.00122230 280.94919131
-0.00503354 -0.00126170 0.99998656 3.40790841
Axis -0.00251922 -0.00062097 0.99999663
Axis point 142.50038467 141.03500871 0.00000000
Rotation angle (degrees) 179.55192266
Shift along axis 2.51271210
Average map value = 0.5775 for 1480 atoms, 247 outside contour
> fitmap #2 inMap #1 resolution 5
Fit map morphology1_protofibril_1.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 5811 points
correlation = 0.7421, correlation about mean = 0.7362, overlap = 540.2
steps = 40, shift = 0.0036, angle = 0.00163 degrees
Position of morphology1_protofibril_1.pdb map 5 (#3) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99995676 -0.00780803 -0.00505321 286.09110371
0.00781418 -0.99996877 -0.00119724 280.94764772
-0.00504370 -0.00123667 0.99998654 3.40947031
Axis -0.00252424 -0.00060844 0.99999663
Axis point 142.50121213 141.03355766 0.00000000
Rotation angle (degrees) 179.55245063
Shift along axis 2.51635444
Average map value = 0.5774 for 1480 atoms, 247 outside contour
> fitmap #2 inMap #1 resolution 5
Fit map morphology1_protofibril_1.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 5811 points
correlation = 0.7421, correlation about mean = 0.7363, overlap = 540.3
steps = 44, shift = 0.00182, angle = 0.00125 degrees
Position of morphology1_protofibril_1.pdb map 5 (#3) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99995677 -0.00781777 -0.00503622 286.09024756
0.00782394 -0.99996868 -0.00120685 280.94737346
-0.00502663 -0.00124620 0.99998661 3.40659334
Axis -0.00251573 -0.00061323 0.99999665
Axis point 142.50008162 141.03412344 0.00000000
Rotation angle (degrees) 179.55189200
Shift along axis 2.51457190
Average map value = 0.5774 for 1480 atoms, 247 outside contour
> fitmap #2 inMap #1 resolution 5
Fit map morphology1_protofibril_1.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 5811 points
correlation = 0.7421, correlation about mean = 0.7362, overlap = 540
steps = 44, shift = 0.00328, angle = 0.00163 degrees
Position of morphology1_protofibril_1.pdb map 5 (#3) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99995691 -0.00781010 -0.00502164 286.08770944
0.00781637 -0.99996871 -0.00123003 280.95131065
-0.00501187 -0.00126923 0.99998666 3.41096782
Axis -0.00250839 -0.00062478 0.99999666
Axis point 142.49933303 141.03556307 0.00000000
Rotation angle (degrees) 179.55232859
Shift along axis 2.51780327
Average map value = 0.5773 for 1480 atoms, 247 outside contour
> fitmap #2 inMap #1 resolution 5
Fit map morphology1_protofibril_1.pdb map 5 in map
Morpholgy_1_Processed_Job101.mrc using 5811 points
correlation = 0.7421, correlation about mean = 0.7363, overlap = 540.8
steps = 40, shift = 0.0102, angle = 0.00857 degrees
Position of morphology1_protofibril_1.pdb map 5 (#3) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99995670 -0.00776828 -0.00512700 286.09378473
0.00777419 -0.99996915 -0.00113273 280.94529717
-0.00511804 -0.00117254 0.99998624 3.40234733
Axis -0.00256128 -0.00057628 0.99999655
Axis point 142.50541169 141.02947923 0.00000000
Rotation angle (degrees) 179.55473496
Shift along axis 2.50766607
Average map value = 0.5778 for 1480 atoms, 248 outside contour
> view matrix models
> #2,-0.99996,-0.0077683,-0.005127,294.34,0.0077742,-0.99997,-0.0011327,248.55,-0.005118,-0.0011725,0.99999,0.5517
> undo
> ui tool show "Fit in Map"
> fitmap #2 inMap #1
Fit molecule morphology1_protofibril_1.pdb (#2) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 1480 atoms
average map value = 0.5792, steps = 48
shifted from previous position = 0.0576
rotated from previous position = 0.123 degrees
atoms outside contour = 246, contour level = 0.07913
Position of morphology1_protofibril_1.pdb (#2) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99997007 -0.00573243 -0.00519930 285.82903142
0.00573480 -0.99998347 -0.00044034 281.19550317
-0.00519669 -0.00047014 0.99998641 3.28690324
Axis -0.00259898 -0.00022756 0.99999660
Axis point 142.51571327 141.00784959 0.00000000
Rotation angle (degrees) 179.67148497
Shift along axis 2.48003732
> fitmap #2 inMap #1
Fit molecule morphology1_protofibril_1.pdb (#2) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 1480 atoms
average map value = 0.5792, steps = 44
shifted from previous position = 0.00322
rotated from previous position = 0.0182 degrees
atoms outside contour = 246, contour level = 0.07913
Position of morphology1_protofibril_1.pdb (#2) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99997093 -0.00547606 -0.00530924 285.80734630
0.00547769 -0.99998497 -0.00029148 281.21275085
-0.00530756 -0.00032056 0.99998589 3.28504061
Axis -0.00265418 -0.00015295 0.99999647
Axis point 142.52298469 140.99797428 0.00000000
Rotation angle (degrees) 179.68619539
Shift along axis 2.48343229
> fitmap #2 inMap #1
Fit molecule morphology1_protofibril_1.pdb (#2) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 1480 atoms
average map value = 0.5793, steps = 40
shifted from previous position = 0.00277
rotated from previous position = 0.00923 degrees
atoms outside contour = 246, contour level = 0.07913
Position of morphology1_protofibril_1.pdb (#2) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99997034 -0.00555959 -0.00533205 285.82105151
0.00556049 -0.99998454 -0.00015511 281.18426212
-0.00533110 -0.00018475 0.99998580 3.26711551
Axis -0.00266577 -0.00008490 0.99999644
Axis point 142.52402544 140.98957896 0.00000000
Rotation angle (degrees) 179.68143041
Shift along axis 2.48129621
> fitmap #2 inMap #1
Fit molecule morphology1_protofibril_1.pdb (#2) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 1480 atoms
average map value = 0.5787, steps = 40
shifted from previous position = 0.0155
rotated from previous position = 0.0242 degrees
atoms outside contour = 247, contour level = 0.07913
Position of morphology1_protofibril_1.pdb (#2) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99997169 -0.00542940 -0.00521320 285.79271700
0.00543229 -0.99998511 -0.00053972 281.25043116
-0.00521020 -0.00056802 0.99998629 3.31748221
Axis -0.00260583 -0.00027687 0.99999657
Axis point 142.51881750 141.01371336 0.00000000
Rotation angle (degrees) 179.68883277
Shift along axis 2.49487162
> fitmap #2 inMap #1
Fit molecule morphology1_protofibril_1.pdb (#2) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 1480 atoms
average map value = 0.5788, steps = 40
shifted from previous position = 0.0043
rotated from previous position = 0.00653 degrees
atoms outside contour = 246, contour level = 0.07913
Position of morphology1_protofibril_1.pdb (#2) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99997146 -0.00546598 -0.00521904 285.79706178
0.00546831 -0.99998497 -0.00043172 281.23274521
-0.00521660 -0.00046025 0.99998631 3.29957890
Axis -0.00260889 -0.00022293 0.99999657
Axis point 142.51844379 141.00737829 0.00000000
Rotation angle (degrees) 179.68675309
Shift along axis 2.49125819
> fitmap #2 inMap #1
Fit molecule morphology1_protofibril_1.pdb (#2) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 1480 atoms
average map value = 0.5787, steps = 48
shifted from previous position = 0.00429
rotated from previous position = 0.00899 degrees
atoms outside contour = 247, contour level = 0.07913
Position of morphology1_protofibril_1.pdb (#2) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99997210 -0.00535497 -0.00521145 285.78226175
0.00535787 -0.99998551 -0.00054295 281.26070992
-0.00520846 -0.00057086 0.99998630 3.31761272
Axis -0.00260496 -0.00027839 0.99999657
Axis point 142.51880821 141.01352325 0.00000000
Rotation angle (degrees) 179.69309725
Shift along axis 2.49484973
> fitmap #2 inMap #1
Fit molecule morphology1_protofibril_1.pdb (#2) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 1480 atoms
average map value = 0.5791, steps = 44
shifted from previous position = 0.0112
rotated from previous position = 0.0208 degrees
atoms outside contour = 246, contour level = 0.07913
Position of morphology1_protofibril_1.pdb (#2) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99997073 -0.00548505 -0.00533790 285.81256237
0.00548634 -0.99998494 -0.00022683 281.20405975
-0.00533658 -0.00025610 0.99998575 3.28157715
Axis -0.00266860 -0.00012067 0.99999643
Axis point 142.52500364 140.99421303 0.00000000
Rotation angle (degrees) 179.68568998
Shift along axis 2.48491184
> fitmap #2 inMap #1
Fit molecule morphology1_protofibril_1.pdb (#2) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 1480 atoms
average map value = 0.5787, steps = 44
shifted from previous position = 0.0101
rotated from previous position = 0.0173 degrees
atoms outside contour = 247, contour level = 0.07913
Position of morphology1_protofibril_1.pdb (#2) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99997144 -0.00547308 -0.00521489 285.79852385
0.00547577 -0.99998490 -0.00050197 281.23978161
-0.00521206 -0.00053051 0.99998630 3.31144457
Axis -0.00260672 -0.00025806 0.99999657
Axis point 142.51866518 141.01147807 0.00000000
Rotation angle (degrees) 179.68633605
Shift along axis 2.49385941
> fitmap #2 inMap #1
Fit molecule morphology1_protofibril_1.pdb (#2) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 1480 atoms
average map value = 0.5791, steps = 44
shifted from previous position = 0.0105
rotated from previous position = 0.0186 degrees
atoms outside contour = 246, contour level = 0.07913
Position of morphology1_protofibril_1.pdb (#2) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99997071 -0.00549109 -0.00533461 285.81296892
0.00549224 -0.99998491 -0.00020128 281.20008446
-0.00533343 -0.00023058 0.99998577 3.27728030
Axis -0.00266699 -0.00010790 0.99999644
Axis point 142.52478468 140.99263101 0.00000000
Rotation angle (degrees) 179.68534819
Shift along axis 2.48466494
> fitmap #2 inMap #1
Fit molecule morphology1_protofibril_1.pdb (#2) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 1480 atoms
average map value = 0.5787, steps = 44
shifted from previous position = 0.00995
rotated from previous position = 0.0177 degrees
atoms outside contour = 247, contour level = 0.07913
Position of morphology1_protofibril_1.pdb (#2) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99997141 -0.00547821 -0.00521466 285.79911132
0.00548082 -0.99998488 -0.00048634 281.23710081
-0.00521192 -0.00051491 0.99998631 3.30880499
Axis -0.00260663 -0.00025025 0.99999657
Axis point 142.51860088 141.01048918 0.00000000
Rotation angle (degrees) 179.68604419
Shift along axis 2.49344132
> fitmap #2 inMap #1
Fit molecule morphology1_protofibril_1.pdb (#2) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 1480 atoms
average map value = 0.5786, steps = 48
shifted from previous position = 0.00283
rotated from previous position = 0.000413 degrees
atoms outside contour = 247, contour level = 0.07913
Position of morphology1_protofibril_1.pdb (#2) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99997145 -0.00547507 -0.00521148 285.79912485
0.00547770 -0.99998489 -0.00049201 281.23863067
-0.00520870 -0.00052054 0.99998632 3.31180079
Axis -0.00260503 -0.00025308 0.99999657
Axis point 142.51882696 141.01103544 0.00000000
Rotation angle (degrees) 179.68622360
Shift along axis 2.49609969
> fitmap #2 inMap #1
Fit molecule morphology1_protofibril_1.pdb (#2) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 1480 atoms
average map value = 0.5792, steps = 44
shifted from previous position = 0.0161
rotated from previous position = 0.0188 degrees
atoms outside contour = 247, contour level = 0.07913
Position of morphology1_protofibril_1.pdb (#2) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99997065 -0.00550757 -0.00532952 285.81366129
0.00550865 -0.99998482 -0.00018777 281.19565799
-0.00532840 -0.00021712 0.99998580 3.27159509
Axis -0.00266447 -0.00010116 0.99999645
Axis point 142.52396879 140.99158284 0.00000000
Rotation angle (degrees) 179.68440566
Shift along axis 2.48159723
> fitmap #2 inMap #1
Fit molecule morphology1_protofibril_1.pdb (#2) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 1480 atoms
average map value = 0.5793, steps = 44
shifted from previous position = 0.00106
rotated from previous position = 0.000728 degrees
atoms outside contour = 247, contour level = 0.07913
Position of morphology1_protofibril_1.pdb (#2) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99997066 -0.00551379 -0.00532000 285.81328805
0.00551484 -0.99998479 -0.00018207 281.19391481
-0.00531892 -0.00021140 0.99998586 3.26845818
Axis -0.00265972 -0.00009831 0.99999646
Axis point 142.52333678 140.99114893 0.00000000
Rotation angle (degrees) 179.68405042
Shift along axis 2.48062122
> fitmap #2 inMap #1
Fit molecule morphology1_protofibril_1.pdb (#2) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 1480 atoms
average map value = 0.5786, steps = 40
shifted from previous position = 0.0183
rotated from previous position = 0.0204 degrees
atoms outside contour = 247, contour level = 0.07913
Position of morphology1_protofibril_1.pdb (#2) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99997163 -0.00543685 -0.00521542 285.79451310
0.00543960 -0.99998509 -0.00051407 281.24712352
-0.00521255 -0.00054243 0.99998629 3.31636988
Axis -0.00260697 -0.00026406 0.99999657
Axis point 142.51920162 141.01256790 0.00000000
Rotation angle (degrees) 179.68840992
Shift along axis 2.49703204
> fitmap #2 inMap #1
Fit molecule morphology1_protofibril_1.pdb (#2) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 1480 atoms
average map value = 0.5791, steps = 36
shifted from previous position = 0.0123
rotated from previous position = 0.0125 degrees
atoms outside contour = 245, contour level = 0.07913
Position of morphology1_protofibril_1.pdb (#2) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99997091 -0.00549098 -0.00529745 285.80870867
0.00549274 -0.99998488 -0.00031826 281.21417063
-0.00529562 -0.00034735 0.99998594 3.28956553
Axis -0.00264825 -0.00016634 0.99999648
Axis point 142.52260656 140.99977920 0.00000000
Rotation angle (degrees) 179.68533677
Shift along axis 2.48588293
> fitmap #2 inMap #1
Fit molecule morphology1_protofibril_1.pdb (#2) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 1480 atoms
average map value = 0.5791, steps = 44
shifted from previous position = 0.00174
rotated from previous position = 0.00201 degrees
atoms outside contour = 246, contour level = 0.07913
Position of morphology1_protofibril_1.pdb (#2) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99997106 -0.00545755 -0.00530357 285.80434808
0.00545927 -0.99998507 -0.00030994 281.21774690
-0.00530180 -0.00033889 0.99998591 3.28761910
Axis -0.00265132 -0.00016215 0.99999647
Axis point 142.52277567 140.99916406 0.00000000
Rotation angle (degrees) 179.68725341
Shift along axis 2.48424927
> fitmap #2 inMap #1
Fit molecule morphology1_protofibril_1.pdb (#2) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 1480 atoms
average map value = 0.5786, steps = 48
shifted from previous position = 0.0129
rotated from previous position = 0.0135 degrees
atoms outside contour = 247, contour level = 0.07913
Position of morphology1_protofibril_1.pdb (#2) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99997148 -0.00546826 -0.00521155 285.79810682
0.00547107 -0.99998491 -0.00052608 281.24358372
-0.00520859 -0.00055458 0.99998631 3.31647707
Axis -0.00260502 -0.00027010 0.99999657
Axis point 142.51878980 141.01305910 0.00000000
Rotation angle (degrees) 179.68660874
Shift along axis 2.49599183
> fitmap #2 inMap #1
Fit molecule morphology1_protofibril_1.pdb (#2) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 1480 atoms
average map value = 0.5792, steps = 44
shifted from previous position = 0.0159
rotated from previous position = 0.0203 degrees
atoms outside contour = 247, contour level = 0.07913
Position of morphology1_protofibril_1.pdb (#2) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99997066 -0.00550547 -0.00532931 285.81337430
0.00550658 -0.99998483 -0.00019458 281.19679464
-0.00532816 -0.00022392 0.99998580 3.27271288
Axis -0.00266435 -0.00010457 0.99999645
Axis point 142.52397171 140.99200730 0.00000000
Rotation angle (degrees) 179.68452521
Shift along axis 2.48179026
> fitmap #2 inMap #1
Fit molecule morphology1_protofibril_1.pdb (#2) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 1480 atoms
average map value = 0.5792, steps = 40
shifted from previous position = 0.00119
rotated from previous position = 0.00259 degrees
atoms outside contour = 246, contour level = 0.07913
Position of morphology1_protofibril_1.pdb (#2) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99997044 -0.00553904 -0.00533541 285.81907960
0.00553999 -0.99998466 -0.00016485 281.18883978
-0.00533442 -0.00019440 0.99998578 3.27064228
Axis -0.00266744 -0.00008975 0.99999644
Axis point 142.52448337 140.99040651 0.00000000
Rotation angle (degrees) 179.68260637
Shift along axis 2.48298781
> fitmap #2 inMap #1
Fit molecule morphology1_protofibril_1.pdb (#2) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 1480 atoms
average map value = 0.5792, steps = 40
shifted from previous position = 0.000196
rotated from previous position = 0.0052 degrees
atoms outside contour = 246, contour level = 0.07913
Position of morphology1_protofibril_1.pdb (#2) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99997017 -0.00562184 -0.00529981 285.82618470
0.00562274 -0.99998420 -0.00015448 281.17617465
-0.00529886 -0.00018428 0.99998597 3.26445272
Axis -0.00264965 -0.00008463 0.99999649
Axis point 142.52219741 140.98999022 0.00000000
Rotation angle (degrees) 179.67786361
Shift along axis 2.48330521
> fitmap #2 inMap #1
Fit molecule morphology1_protofibril_1.pdb (#2) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 1480 atoms
average map value = 0.5787, steps = 44
shifted from previous position = 0.0133
rotated from previous position = 0.022 degrees
atoms outside contour = 247, contour level = 0.07913
Position of morphology1_protofibril_1.pdb (#2) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99997145 -0.00546953 -0.00521654 285.79857251
0.00547220 -0.99998492 -0.00049855 281.23999553
-0.00521374 -0.00052708 0.99998629 3.31219617
Axis -0.00260755 -0.00025635 0.99999657
Axis point 142.51894163 141.01132826 0.00000000
Rotation angle (degrees) 179.68653980
Shift along axis 2.49485442
> fitmap #2 inMap #1
Fit molecule morphology1_protofibril_1.pdb (#2) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 1480 atoms
average map value = 0.5792, steps = 44
shifted from previous position = 0.0122
rotated from previous position = 0.0182 degrees
atoms outside contour = 246, contour level = 0.07913
Position of morphology1_protofibril_1.pdb (#2) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99997070 -0.00549372 -0.00533315 285.81291481
0.00549489 -0.99998490 -0.00020366 281.19991373
-0.00533195 -0.00023295 0.99998578 3.27671658
Axis -0.00266626 -0.00010909 0.99999644
Axis point 142.52457021 140.99273622 0.00000000
Rotation angle (degrees) 179.68519686
Shift along axis 2.48397702
> fitmap #2 inMap #1
Fit molecule morphology1_protofibril_1.pdb (#2) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 1480 atoms
average map value = 0.5786, steps = 44
shifted from previous position = 0.014
rotated from previous position = 0.0194 degrees
atoms outside contour = 247, contour level = 0.07913
Position of morphology1_protofibril_1.pdb (#2) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99997149 -0.00545835 -0.00521981 285.79789135
0.00546115 -0.99998497 -0.00052179 281.24465593
-0.00521688 -0.00055028 0.99998626 3.31752343
Axis -0.00260916 -0.00026796 0.99999656
Axis point 142.51938599 141.01288306 0.00000000
Rotation angle (degrees) 179.68717684
Shift along axis 2.49645949
> fitmap #2 inMap #1
Fit molecule morphology1_protofibril_1.pdb (#2) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 1480 atoms
average map value = 0.5786, steps = 40
shifted from previous position = 0.000298
rotated from previous position = 0.00752 degrees
atoms outside contour = 247, contour level = 0.07913
Position of morphology1_protofibril_1.pdb (#2) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99997196 -0.00533670 -0.00525548 285.78559855
0.00533969 -0.99998560 -0.00055616 281.26563998
-0.00525244 -0.00058421 0.99998606 3.32739241
Axis -0.00262696 -0.00028503 0.99999651
Axis point 142.52180095 141.01470299 0.00000000
Rotation angle (degrees) 179.69414155
Shift along axis 2.49646357
> fitmap #2 inMap #1
Fit molecule morphology1_protofibril_1.pdb (#2) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 1480 atoms
average map value = 0.5793, steps = 48
shifted from previous position = 0.0186
rotated from previous position = 0.0257 degrees
atoms outside contour = 246, contour level = 0.07913
Position of morphology1_protofibril_1.pdb (#2) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99997056 -0.00551274 -0.00534083 285.81528373
0.00551363 -0.99998480 -0.00015148 281.19034734
-0.00533992 -0.00018093 0.99998575 3.26662491
Axis -0.00267017 -0.00008304 0.99999643
Axis point 142.52443350 140.98926237 0.00000000
Rotation angle (degrees) 179.68411504
Shift along axis 2.48008691
> fitmap #2 inMap #1
Fit molecule morphology1_protofibril_1.pdb (#2) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 1480 atoms
average map value = 0.5786, steps = 40
shifted from previous position = 0.0177
rotated from previous position = 0.0245 degrees
atoms outside contour = 247, contour level = 0.07913
Position of morphology1_protofibril_1.pdb (#2) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99997174 -0.00541563 -0.00521659 285.79147244
0.00541857 -0.99998518 -0.00054872 281.25358844
-0.00521354 -0.00057697 0.99998627 3.32006684
Axis -0.00260751 -0.00028136 0.99999656
Axis point 142.51916361 141.01431597 0.00000000
Rotation angle (degrees) 179.68962035
Shift along axis 2.49571679
> fitmap #2 inMap #1
Fit molecule morphology1_protofibril_1.pdb (#2) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 1480 atoms
average map value = 0.5791, steps = 44
shifted from previous position = 0.0126
rotated from previous position = 0.0194 degrees
atoms outside contour = 247, contour level = 0.07913
Position of morphology1_protofibril_1.pdb (#2) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99997078 -0.00548312 -0.00532925 285.81113129
0.00548445 -0.99998495 -0.00023659 281.20544779
-0.00532788 -0.00026581 0.99998580 3.28140297
Axis -0.00266427 -0.00012554 0.99999644
Axis point 142.52441335 140.99477633 0.00000000
Rotation angle (degrees) 179.68579961
Shift along axis 2.48461185
> save "/Users/u0159610/SwitchLab Dropbox/brajabandhu
> pradhan/Heterotypic_Abeta_medin_manuscript/Data/Morphology_1_Models/morphology1_protofibril_0.pdb"
> relModel #1
Computing secondary structure
> dssp
Computing secondary structure
> close #4
> close #3
> dssp #2
Computing secondary structure
> view matrix models
> #2,-0.99997,-0.0054831,-0.0053293,284.67,0.0054845,-0.99998,-0.00023659,299.41,-0.0053279,-0.00026581,0.99999,13.64
> undo
> fitmap #2 inMap #1
Fit molecule morphology1_protofibril_1.pdb (#2) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 1480 atoms
average map value = 0.5787, steps = 44
shifted from previous position = 0.0114
rotated from previous position = 0.0153 degrees
atoms outside contour = 247, contour level = 0.07913
Position of morphology1_protofibril_1.pdb (#2) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99997218 -0.00526409 -0.00528835 285.77895882
0.00526620 -0.99998607 -0.00038462 281.25430592
-0.00528625 -0.00041246 0.99998597 3.30669901
Axis -0.00264363 -0.00019921 0.99999649
Axis point 142.52363328 141.00366316 0.00000000
Rotation angle (degrees) 179.69832696
Shift along axis 2.49516562
> fitmap #2 inMap #1
Fit molecule morphology1_protofibril_1.pdb (#2) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 1480 atoms
average map value = 0.5787, steps = 44
shifted from previous position = 0.0016
rotated from previous position = 0.0145 degrees
atoms outside contour = 247, contour level = 0.07913
Position of morphology1_protofibril_1.pdb (#2) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99997144 -0.00547511 -0.00521306 285.79844310
0.00547780 -0.99998489 -0.00050206 281.23944336
-0.00521023 -0.00053060 0.99998631 3.31075673
Axis -0.00260580 -0.00025811 0.99999657
Axis point 142.51847979 141.01145421 0.00000000
Rotation angle (degrees) 179.68621946
Shift along axis 2.49342098
> fitmap #2 inMap #1
Fit molecule morphology1_protofibril_1.pdb (#2) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 1480 atoms
average map value = 0.5791, steps = 44
shifted from previous position = 0.00967
rotated from previous position = 0.0186 degrees
atoms outside contour = 246, contour level = 0.07913
Position of morphology1_protofibril_1.pdb (#2) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99997072 -0.00548976 -0.00533500 285.81293917
0.00549091 -0.99998492 -0.00020210 281.20039404
-0.00533381 -0.00023139 0.99998577 3.27774731
Axis -0.00266719 -0.00010831 0.99999644
Axis point 142.52486366 140.99269157 0.00000000
Rotation angle (degrees) 179.68542427
Shift along axis 2.48496276
> fitmap #2 inMap #1
Fit molecule morphology1_protofibril_1.pdb (#2) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 1480 atoms
average map value = 0.5791, steps = 44
shifted from previous position = 0.000769
rotated from previous position = 0.0132 degrees
atoms outside contour = 245, contour level = 0.07913
Position of morphology1_protofibril_1.pdb (#2) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99997071 -0.00556961 -0.00525247 285.81403894
0.00557180 -0.99998441 -0.00040236 281.21376204
-0.00525015 -0.00043162 0.99998615 3.29379557
Axis -0.00262564 -0.00020843 0.99999653
Axis point 142.51969760 141.00528549 0.00000000
Rotation angle (degrees) 179.68081948
Shift along axis 2.48472449
> fitmap #2 inMap #1
Fit molecule morphology1_protofibril_1.pdb (#2) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 1480 atoms
average map value = 0.5786, steps = 48
shifted from previous position = 0.014
rotated from previous position = 0.0103 degrees
atoms outside contour = 247, contour level = 0.07913
Position of morphology1_protofibril_1.pdb (#2) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99997157 -0.00545658 -0.00520816 285.79665814
0.00545944 -0.99998497 -0.00053536 281.24671605
-0.00520516 -0.00056378 0.99998632 3.31914774
Axis -0.00260331 -0.00027473 0.99999657
Axis point 142.51888133 141.01379852 0.00000000
Rotation angle (degrees) 179.68727655
Shift along axis 2.49785310
> fitmap #2 inMap #1
Fit molecule morphology1_protofibril_1.pdb (#2) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 1480 atoms
average map value = 0.5787, steps = 40
shifted from previous position = 0.00268
rotated from previous position = 0.00198 degrees
atoms outside contour = 247, contour level = 0.07913
Position of morphology1_protofibril_1.pdb (#2) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99997171 -0.00542357 -0.00521439 285.79218066
0.00542648 -0.99998514 -0.00054393 281.25182380
-0.00521137 -0.00057221 0.99998628 3.31863634
Axis -0.00260642 -0.00027897 0.99999656
Axis point 142.51895906 141.01399683 0.00000000
Rotation angle (degrees) 179.68916616
Shift along axis 2.49526842
> fitmap #2 inMap #1
Fit molecule morphology1_protofibril_1.pdb (#2) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 1480 atoms
average map value = 0.5792, steps = 44
shifted from previous position = 0.0149
rotated from previous position = 0.0206 degrees
atoms outside contour = 247, contour level = 0.07913
Position of morphology1_protofibril_1.pdb (#2) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99997068 -0.00550090 -0.00532938 285.81281724
0.00550211 -0.99998486 -0.00021141 281.19944342
-0.00532814 -0.00024073 0.99998580 3.27535821
Axis -0.00266437 -0.00011297 0.99999644
Axis point 142.52401103 140.99302163 0.00000000
Rotation angle (degrees) 179.68478436
Shift along axis 2.48206900
> fitmap #2 inMap #1
Fit molecule morphology1_protofibril_1.pdb (#2) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 1480 atoms
average map value = 0.5792, steps = 40
shifted from previous position = 0.000486
rotated from previous position = 0.00463 degrees
atoms outside contour = 246, contour level = 0.07913
Position of morphology1_protofibril_1.pdb (#2) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99997037 -0.00555592 -0.00533157 285.82082945
0.00555681 -0.99998456 -0.00015206 281.18493164
-0.00533065 -0.00018169 0.99998580 3.26798775
Axis -0.00266554 -0.00008338 0.99999644
Axis point 142.52417272 140.98964824 0.00000000
Rotation angle (degrees) 179.68164106
Shift along axis 2.48266512
> fitmap #2 inMap #1
Fit molecule morphology1_protofibril_1.pdb (#2) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 1480 atoms
average map value = 0.5792, steps = 40
shifted from previous position = 9.2e-05
rotated from previous position = 0.00792 degrees
atoms outside contour = 246, contour level = 0.07913
Position of morphology1_protofibril_1.pdb (#2) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99997006 -0.00567262 -0.00526612 285.82894502
0.00567368 -0.99998390 -0.00018580 281.17274239
-0.00526499 -0.00021568 0.99998614 3.26353546
Axis -0.00263276 -0.00010031 0.99999653
Axis point 142.51997835 140.99193797 0.00000000
Rotation angle (degrees) 179.67494948
Shift along axis 2.48279938
> fitmap #2 inMap #1
Fit molecule morphology1_protofibril_1.pdb (#2) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 1480 atoms
average map value = 0.5787, steps = 44
shifted from previous position = 0.0132
rotated from previous position = 0.0199 degrees
atoms outside contour = 247, contour level = 0.07913
Position of morphology1_protofibril_1.pdb (#2) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99997139 -0.00547796 -0.00521995 285.80003455
0.00548049 -0.99998489 -0.00047076 281.23542549
-0.00521729 -0.00049935 0.99998629 3.30834221
Axis -0.00260929 -0.00024247 0.99999657
Axis point 142.51908905 141.00961909 0.00000000
Rotation angle (degrees) 179.68606085
Shift along axis 2.49440448
> fitmap #2 inMap #1
Fit molecule morphology1_protofibril_1.pdb (#2) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 1480 atoms
average map value = 0.5791, steps = 44
shifted from previous position = 0.0102
rotated from previous position = 0.016 degrees
atoms outside contour = 246, contour level = 0.07913
Position of morphology1_protofibril_1.pdb (#2) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99997074 -0.00548586 -0.00533437 285.81238437
0.00548709 -0.99998494 -0.00021526 281.20258805
-0.00533311 -0.00024452 0.99998577 3.27979953
Axis -0.00266685 -0.00011488 0.99999644
Axis point 142.52485661 140.99352306 0.00000000
Rotation angle (degrees) 179.68564530
Shift along axis 2.48526278
> fitmap #2 inMap #1
Fit molecule morphology1_protofibril_1.pdb (#2) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 1480 atoms
average map value = 0.579, steps = 40
shifted from previous position = 0.00345
rotated from previous position = 0.00645 degrees
atoms outside contour = 245, contour level = 0.07913
Position of morphology1_protofibril_1.pdb (#2) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99997093 -0.00546794 -0.00531756 285.80813260
0.00546975 -0.99998500 -0.00032513 281.21844890
-0.00531570 -0.00035421 0.99998583 3.29577979
Axis -0.00265830 -0.00016977 0.99999645
Axis point 142.52395589 141.00027885 0.00000000
Rotation angle (degrees) 179.68665575
Shift along axis 2.48826058
> fitmap #2 inMap #1
Fit molecule morphology1_protofibril_1.pdb (#2) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 1480 atoms
average map value = 0.579, steps = 40
shifted from previous position = 0.00233
rotated from previous position = 0.0121 degrees
atoms outside contour = 246, contour level = 0.07913
Position of morphology1_protofibril_1.pdb (#2) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99997110 -0.00554616 -0.00520318 285.80548854
0.00554876 -0.99998450 -0.00048522 281.22643773
-0.00520040 -0.00051407 0.99998637 3.29926127
Axis -0.00260088 -0.00024976 0.99999659
Axis point 142.51700542 141.01001896 0.00000000
Rotation angle (degrees) 179.68215146
Shift along axis 2.48566454
> fitmap #2 inMap #1
Fit molecule morphology1_protofibril_1.pdb (#2) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 1480 atoms
average map value = 0.5792, steps = 48
shifted from previous position = 0.00668
rotated from previous position = 0.00415 degrees
atoms outside contour = 244, contour level = 0.07913
Position of morphology1_protofibril_1.pdb (#2) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99997106 -0.00559063 -0.00516336 285.80607510
0.00559342 -0.99998423 -0.00052598 281.22543878
-0.00516034 -0.00055484 0.99998656 3.29261874
Axis -0.00258091 -0.00027014 0.99999663
Axis point 142.51412518 141.01273735 0.00000000
Rotation angle (degrees) 179.67959800
Shift along axis 2.47899662
> fitmap #2 inMap #1
Fit molecule morphology1_protofibril_1.pdb (#2) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 1480 atoms
average map value = 0.5791, steps = 44
shifted from previous position = 0.00546
rotated from previous position = 0.00663 degrees
atoms outside contour = 246, contour level = 0.07913
Position of morphology1_protofibril_1.pdb (#2) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99997110 -0.00552146 -0.00522947 285.80502446
0.00552395 -0.99998465 -0.00046120 281.22735829
-0.00522684 -0.00049007 0.99998624 3.29846891
Axis -0.00261406 -0.00023776 0.99999656
Axis point 142.51853309 141.00869013 0.00000000
Rotation angle (degrees) 179.68356964
Shift along axis 2.48448211
> fitmap #2 inMap #1
Fit molecule morphology1_protofibril_1.pdb (#2) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 1480 atoms
average map value = 0.5791, steps = 44
shifted from previous position = 0.000437
rotated from previous position = 0.000214 degrees
atoms outside contour = 246, contour level = 0.07913
Position of morphology1_protofibril_1.pdb (#2) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99997111 -0.00551890 -0.00522997 285.80481105
0.00552140 -0.99998466 -0.00046389 281.22798982
-0.00522733 -0.00049275 0.99998624 3.29933099
Axis -0.00261431 -0.00023910 0.99999655
Axis point 142.51860688 141.00882515 0.00000000
Rotation angle (degrees) 179.68371619
Shift along axis 2.48489598
> fitmap #2 inMap #1
Fit molecule morphology1_protofibril_1.pdb (#2) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 1480 atoms
average map value = 0.5788, steps = 44
shifted from previous position = 0.00765
rotated from previous position = 0.00324 degrees
atoms outside contour = 246, contour level = 0.07913
Position of morphology1_protofibril_1.pdb (#2) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99997142 -0.00547974 -0.00521147 285.79850374
0.00548242 -0.99998486 -0.00050038 281.23849483
-0.00520865 -0.00052893 0.99998632 3.30919534
Axis -0.00260501 -0.00025727 0.99999657
Axis point 142.51818312 141.01130866 0.00000000
Rotation angle (degrees) 179.68595466
Shift along axis 2.49232183
> fitmap #2 inMap #1
Fit molecule morphology1_protofibril_1.pdb (#2) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 1480 atoms
average map value = 0.5791, steps = 36
shifted from previous position = 0.00665
rotated from previous position = 0.0149 degrees
atoms outside contour = 245, contour level = 0.07913
Position of morphology1_protofibril_1.pdb (#2) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99997080 -0.00547980 -0.00532958 285.81115177
0.00548131 -0.99998496 -0.00026831 281.21018507
-0.00532803 -0.00029752 0.99998579 3.28775870
Axis -0.00266439 -0.00014140 0.99999644
Axis point 142.52465288 140.99694057 0.00000000
Rotation angle (degrees) 179.68598475
Shift along axis 2.48647375
> fitmap #2 inMap #1
Fit molecule morphology1_protofibril_1.pdb (#2) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 1480 atoms
average map value = 0.5789, steps = 40
shifted from previous position = 0.00481
rotated from previous position = 0.0087 degrees
atoms outside contour = 246, contour level = 0.07913
Position of morphology1_protofibril_1.pdb (#2) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99997126 -0.00548481 -0.00523614 285.80189802
0.00548692 -0.99998489 -0.00038787 281.22418624
-0.00523394 -0.00041659 0.99998624 3.29556460
Axis -0.00261750 -0.00020106 0.99999655
Axis point 142.51956619 141.00440685 0.00000000
Rotation angle (degrees) 179.68568028
Shift along axis 2.49092433
> fitmap #2 inMap #1
Fit molecule morphology1_protofibril_1.pdb (#2) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 1480 atoms
average map value = 0.5792, steps = 44
shifted from previous position = 0.00976
rotated from previous position = 0.0123 degrees
atoms outside contour = 247, contour level = 0.07913
Position of morphology1_protofibril_1.pdb (#2) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99997066 -0.00550389 -0.00532995 285.81334422
0.00550500 -0.99998484 -0.00019521 281.19715368
-0.00532879 -0.00022455 0.99998580 3.27318560
Axis -0.00266467 -0.00010488 0.99999644
Axis point 142.52406853 140.99207428 0.00000000
Rotation angle (degrees) 179.68461585
Shift along axis 2.48208404
> fitmap #2 inMap #1
Fit molecule morphology1_protofibril_1.pdb (#2) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 1480 atoms
average map value = 0.5792, steps = 40
shifted from previous position = 0.00159
rotated from previous position = 0.0191 degrees
atoms outside contour = 246, contour level = 0.07913
Position of morphology1_protofibril_1.pdb (#2) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99997075 -0.00563902 -0.00517089 285.81360148
0.00564145 -0.99998400 -0.00045534 281.21009017
-0.00516824 -0.00048450 0.99998655 3.28739503
Axis -0.00258477 -0.00023490 0.99999663
Axis point 142.51451992 141.00846014 0.00000000
Rotation angle (degrees) 179.67683553
Shift along axis 2.48256583
> fitmap #2 inMap #1
Fit molecule morphology1_protofibril_1.pdb (#2) to map
Morpholgy_1_Processed_Job101.mrc (#1) using 1480 atoms
average map value = 0.5791, steps = 44
shifted from previous position = 0.000887
rotated from previous position = 0.00734 degrees
atoms outside contour = 245, contour level = 0.07913
Position of morphology1_protofibril_1.pdb (#2) relative to
Morpholgy_1_Processed_Job101.mrc (#1) coordinates:
Matrix rotation and translation
-0.99997109 -0.00552429 -0.00522768 285.80502118
0.00552674 -0.99998464 -0.00045484 281.22630251
-0.00522509 -0.00048372 0.99998626 3.29599487
Axis -0.00261318 -0.00023458 0.99999656
Axis point 142.51833063 141.00835752 0.00000000
Rotation angle (degrees) 179.68340861
Shift along axis 2.48315396
> select subtract #2
Nothing selected
===== Log before crash end =====
Log:
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 89.3
OpenGL renderer: Apple M2
OpenGL vendor: Apple
Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.7.1, Qt 6.7.1
Qt runtime version: 6.7.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: Mac14,7
Model Number: Z16S000UNFN/A
Chip: Apple M2
Total Number of Cores: 8 (4 performance and 4 efficiency)
Memory: 16 GB
System Firmware Version: 11881.81.4
OS Loader Version: 11881.81.4
Software:
System Software Overview:
System Version: macOS 15.3.2 (24D81)
Kernel Version: Darwin 24.3.0
Time since boot: 6 hours, 30 minutes
Graphics/Displays:
Apple M2:
Chipset Model: Apple M2
Type: GPU
Bus: Built-In
Total Number of Cores: 10
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
S24R65x:
Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
UI Looks like: 1920 x 1080 @ 60.00Hz
Mirror: Off
Online: Yes
Rotation: Supported
Installed Packages:
alabaster: 1.0.0
anyio: 4.7.0
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 3.0.0
auditwheel: 6.1.0
babel: 2.16.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 3.0.0
build: 1.2.1
certifi: 2023.11.17
cftime: 1.6.4.post1
charset-normalizer: 3.4.0
ChimeraX-AddCharge: 1.5.18
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.16.1
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.58.8
ChimeraX-AtomicLibrary: 14.1.11
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.4.0
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.3
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.9
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.4
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.6
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.3
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.2.1
ChimeraX-Label: 1.1.14
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.6
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.2
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.2
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.18
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.14
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.6
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.2
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.6.2
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.6
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.14
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.0
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.18.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.41
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.3.1
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.9
decorator: 5.1.1
docutils: 0.21.2
executing: 2.1.0
filelock: 3.15.4
fonttools: 4.55.3
funcparserlib: 2.0.0a0
glfw: 2.8.0
grako: 3.16.5
h11: 0.14.0
h5py: 3.12.1
html2text: 2024.2.26
httpcore: 1.0.7
httpx: 0.28.1
idna: 3.10
ihm: 1.3
imagecodecs: 2024.6.1
imagesize: 1.4.1
ipykernel: 6.29.5
ipython: 8.26.0
ipywidgets: 8.1.5
jedi: 0.19.1
Jinja2: 3.1.4
jupyter_client: 8.6.2
jupyter_core: 5.7.2
jupyterlab_widgets: 3.0.13
kiwisolver: 1.4.7
line_profiler: 4.1.3
lxml: 5.2.2
lz4: 4.3.3
MarkupSafe: 3.0.2
matplotlib: 3.9.2
matplotlib-inline: 0.1.7
msgpack: 1.0.8
ndindex: 1.9.2
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.2
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.4.0
pip: 24.2
pkginfo: 1.11.1
platformdirs: 4.3.6
prompt_toolkit: 3.0.48
psutil: 6.0.0
ptyprocess: 0.7.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pyelftools: 0.31
Pygments: 2.18.0
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.2.0
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.7.1
PyQt6-Qt6: 6.7.3
PyQt6-WebEngine-commercial: 6.7.0
PyQt6-WebEngine-Qt6: 6.7.3
PyQt6-WebEngineSubwheel-Qt6: 6.7.3
PyQt6_sip: 13.8.0
python-dateutil: 2.9.0.post0
pytz: 2024.2
pyzmq: 26.2.0
qtconsole: 5.5.2
QtPy: 2.4.2
qtshim: 1.0
RandomWords: 0.4.0
requests: 2.32.3
scipy: 1.14.0
setuptools: 72.1.0
sfftk-rw: 0.8.1
six: 1.16.0
sniffio: 1.3.1
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.6
Sphinx: 8.0.2
sphinx-autodoc-typehints: 2.2.3
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.10.1
tcia_utils: 1.5.1
tifffile: 2024.7.24
tinyarray: 1.2.4
tornado: 6.4.2
traitlets: 5.14.3
typing_extensions: 4.12.2
tzdata: 2024.2
urllib3: 2.2.3
wcwidth: 0.2.13
webcolors: 24.6.0
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.13
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