ChimeraX bug report submission

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        macOS-15.4-arm64-arm-64bit
ChimeraX Version: 1.7.1 (2024-01-23 01:58:08 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 1.7.1 (2024-01-23)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open
> /Users/ts3435/Library/CloudStorage/Dropbox/GrantProposals/Fairjourney_FJB_IgG_oligos/Hexamerising-
> peptide/Patent/1dn2_clean.pdb

Chain information for 1dn2_clean.pdb #1  
---  
Chain | Description  
A B | No description available  
E F | No description available  
  
Drag select of 11 residues  
Drag select of 2 residues  

> select up

110 atoms, 111 bonds, 7 residues, 1 model selected  

> select up

199 atoms, 204 bonds, 13 residues, 1 model selected  

> select up

6981 atoms, 7087 bonds, 440 residues, 1 model selected  

> select down

199 atoms, 204 bonds, 13 residues, 1 model selected  

> delete atoms sel

> delete bonds sel

> select clear

> show atoms

> hide atoms

> color bychain

Drag select of 5 residues  

> select up

173 atoms, 177 bonds, 11 residues, 1 model selected  

> select up

199 atoms, 204 bonds, 13 residues, 1 model selected  

> show sel atoms

> hide sel cartoons

> color sel byhetero

> hide H

> select clear

Drag select of 2 atoms, 1 bonds  
Alignment identifier is 1/F  

> select clear

[Repeated 2 time(s)]

> isolde start

> set selectionWidth 4

Done loading forcefield  

> isolde set simFidelityMode Medium/Medium

ISOLDE: setting sim fidelity mode to Medium/Medium  
nonbonded_cutoff_distance = 0.900000  
use_gbsa = True  
gbsa_cutoff = 1.100000  
ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
chains...  
Chain information for 1dn2_clean.pdb  
---  
Chain | Description  
1.2/A 1.2/B | No description available  
1.2/F | No description available  
  

> select clear

> isolde add aa glu sel

[Repeated 1 time(s)]

> select up

227 atoms, 232 bonds, 15 residues, 1 model selected  

> select up

6810 atoms, 6911 bonds, 429 residues, 2 models selected  

> select up

6810 atoms, 6911 bonds, 429 residues, 3 models selected  

> select down

6810 atoms, 6911 bonds, 429 residues, 2 models selected  

> select down

227 atoms, 232 bonds, 15 residues, 2 models selected  

> isolde sim start /F

ISOLDE: started sim  

> isolde sim stop

Sim termination reason: None  
ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
chains...  
ISOLDE: stopped sim  

> save /Users/ts3435/Desktop/EDTA.pdb

> select up

30 atoms, 28 bonds, 2 residues, 1 model selected  

> delete atoms (#!1.2 & sel)

> delete bonds (#!1.2 & sel)

> isolde add aa pro sel

> isolde add aa gly sel

> isolde add aa phe sel

> isolde add aa his sel

> ui tool show Rotamers

Populating font family aliases took 58 ms. Replace uses of missing font family
"Times" with one that exists to avoid this cost.  

> swapaa interactive sel TYR rotLib Dunbrack

/F TRP 4: phi -134.3, psi 140.8 trans  
Changed 180 bond radii  

> swapaa #!1.2/F:4 TYR criteria 1 rotLib Dunbrack

Using Dunbrack library  
1dn2_clean.pdb #!1.2/F TRP 4: phi -134.3, psi 140.8 trans  
Applying TYR rotamer (chi angles: -62.6 88.5) to 1dn2_clean.pdb #!1.2/F TYR 4  

> ui tool show Rotamers

> swapaa interactive sel ARG rotLib Dunbrack

/F LEU 6: phi 48.0, psi 33.4 trans  
Changed 600 bond radii  

> swapaa #!1.2/F:6 ARG criteria 10 rotLib Dunbrack

Using Dunbrack library  
1dn2_clean.pdb #!1.2/F LEU 6: phi 48.0, psi 33.4 trans  
Applying ARG rotamer (chi angles: -59.1 -64.1 -169.1 -94.8) to 1dn2_clean.pdb
#!1.2/F ARG 6  

> addh

Summary of feedback from adding hydrogens to 1dn2_clean.pdb #1.2  
---  
notes | Termini for 1dn2_clean.pdb (#1.2) chain A determined from SEQRES
records  
Termini for 1dn2_clean.pdb (#1.2) chain B determined from SEQRES records  
No usable SEQRES records for 1dn2_clean.pdb (#1.2) chain F; guessing termini
instead  
Chain-initial residues that are actual N termini: /A GLY 237, /B GLY 237, /F
GLY -1  
Chain-initial residues that are not actual N termini: /F GLY -1  
Chain-final residues that are actual C termini: /A LEU 443, /B LEU 443, /F HIS
15  
Chain-final residues that are not actual C termini: /F HIS 15  
Missing OXT added to C-terminal residue /F HIS 15  
326 hydrogen bonds  
18 hydrogens added  
  

> select up

21 atoms, 21 bonds, 1 residue, 1 model selected  

> select up

58 atoms, 59 bonds, 4 residues, 2 models selected  

> select up

259 atoms, 266 bonds, 17 residues, 2 models selected  

> select up

6842 atoms, 6945 bonds, 431 residues, 2 models selected  

> select down

259 atoms, 266 bonds, 17 residues, 2 models selected  

> isolde sim start /F

ISOLDE: started sim  

> isolde sim stop

Sim termination reason: None  
ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
chains...  
ISOLDE: Corrected atom nomenclature of 2 residues in model #1.2 to IUPAC-IUB
standards.  
ISOLDE: stopped sim  

> isolde sim start /F:-1-0,14-15

ISOLDE: started sim  

> isolde sim stop

Sim termination reason: None  
ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
chains...  
ISOLDE: stopped sim  

> save /Users/ts3435/Desktop/2019_1.pdb

> select up

259 atoms, 266 bonds, 17 residues, 2 models selected  

> select down

60 atoms, 22 bonds, 4 residues, 2 models selected  

> select up

60 atoms, 61 bonds, 4 residues, 1 model selected  

> delete atoms (#!1.2 & sel)

> delete bonds (#!1.2 & sel)

> select clear

> isolde add aa cys sel

[Repeated 1 time(s)]Created disulphide bond between F14 and F0.  

> select up

20 atoms, 19 bonds, 2 residues, 1 model selected  

> delete atoms (#!1.2 & sel)

> delete bonds (#!1.2 & sel)

> isolde add aa HCY sel

Fetching CCD HCY from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/Y/HCY/HCY.cif  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/cmd_line/tool.py", line 319, in execute  
cmd.run(cmd_text)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/cli.py", line 2908, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/atomic/building/cmd.py", line 132, in add_aa_cmd  
add_amino_acid_residue(structure, resname.upper(), prev_res=prev_res,
next_res=next_res,  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/atomic/building/build_utils.py", line 217, in
add_amino_acid_residue  
add_bond(r.find_atom('C'), next_res.find_atom('N'))  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/atomic/struct_edit.py", line 161, in add_bond  
if a1.num_bonds > 0:  
^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'num_bonds'  
  
AttributeError: 'NoneType' object has no attribute 'num_bonds'  
  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/atomic/struct_edit.py", line 161, in add_bond  
if a1.num_bonds > 0:  
^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  

> isolde add aa hcy sel

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/cmd_line/tool.py", line 319, in execute  
cmd.run(cmd_text)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/cli.py", line 2908, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/atomic/building/cmd.py", line 132, in add_aa_cmd  
add_amino_acid_residue(structure, resname.upper(), prev_res=prev_res,
next_res=next_res,  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/atomic/building/build_utils.py", line 217, in
add_amino_acid_residue  
add_bond(r.find_atom('C'), next_res.find_atom('N'))  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/atomic/struct_edit.py", line 161, in add_bond  
if a1.num_bonds > 0:  
^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'num_bonds'  
  
AttributeError: 'NoneType' object has no attribute 'num_bonds'  
  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/atomic/struct_edit.py", line 161, in add_bond  
if a1.num_bonds > 0:  
^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  

> isolde add aa hcy sel

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/cmd_line/tool.py", line 319, in execute  
cmd.run(cmd_text)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/cli.py", line 2908, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/atomic/building/cmd.py", line 132, in add_aa_cmd  
add_amino_acid_residue(structure, resname.upper(), prev_res=prev_res,
next_res=next_res,  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/atomic/building/build_utils.py", line 217, in
add_amino_acid_residue  
add_bond(r.find_atom('C'), next_res.find_atom('N'))  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/atomic/struct_edit.py", line 161, in add_bond  
if a1.num_bonds > 0:  
^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'num_bonds'  
  
AttributeError: 'NoneType' object has no attribute 'num_bonds'  
  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/atomic/struct_edit.py", line 161, in add_bond  
if a1.num_bonds > 0:  
^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  

> isolde add aa hcy sel

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/cmd_line/tool.py", line 319, in execute  
cmd.run(cmd_text)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/cli.py", line 2908, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/atomic/building/cmd.py", line 132, in add_aa_cmd  
add_amino_acid_residue(structure, resname.upper(), prev_res=prev_res,
next_res=next_res,  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/atomic/building/build_utils.py", line 210, in
add_amino_acid_residue  
add_bond(r.find_atom('N'), prev_res.find_atom('C'))  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/atomic/struct_edit.py", line 161, in add_bond  
if a1.num_bonds > 0:  
^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'num_bonds'  
  
AttributeError: 'NoneType' object has no attribute 'num_bonds'  
  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/atomic/struct_edit.py", line 161, in add_bond  
if a1.num_bonds > 0:  
^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  

> isolde add aa cys sel

> select clear

> show atoms

> delete atoms (#!1.2 & sel)

> delete bonds (#!1.2 & sel)

> isolde sim start /F:14

Loading residue template for HCY from internal database  

Chain F, residue 0 specifies more than one residue! The simulation can still
run, but this will probably cause problems later if not rectified by
renumbering.  

[Repeated 1 time(s)]

Chain F, residue 14 specifies more than one residue! The simulation can still
run, but this will probably cause problems later if not rectified by
renumbering.  

Sim termination reason: None  
ISOLDE: stopped sim  

Chain F, residue 0 specifies more than one residue! The simulation can still
run, but this will probably cause problems later if not rectified by
renumbering.  

[Repeated 1 time(s)]

Chain F, residue 14 specifies more than one residue! The simulation can still
run, but this will probably cause problems later if not rectified by
renumbering.  

> select up

14 atoms, 10 bonds, 4 residues, 1 model selected  

> select up

220 atoms, 232 bonds, 4 residues, 1 model selected  

> delete atoms (#!1.2 & sel)

> delete bonds (#!1.2 & sel)

> isolde sim start /F:14

Sim termination reason: None  
ISOLDE: stopped sim  
Traceback (most recent call last):  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/ui/validation_tab/unparameterised.py", line 160, in
_table_item_clicked_cb  
residue.atoms.displays = True  
^^^^^^^^^^^^^  
File "atomic_cpp/cymol.pyx", line 1038, in
chimerax.atomic.cymol.CyResidue.atoms.__get__  
RuntimeError: Residue already deleted  
  
RuntimeError: Residue already deleted  
  
File "atomic_cpp/cymol.pyx", line 1038, in
chimerax.atomic.cymol.CyResidue.atoms.__get__  
  
See log for complete Python traceback.  
  
Fetching CCD AAC from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/C/AAC/AAC.cif  
Fetching CCD CSO from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/O/CSO/CSO.cif  
Fetching CCD CSS from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/S/CSS/CSS.cif  

MD template CYS for residue CYS F14 contains extra atoms that are not in a
coordinate template, and are not directly connected to existing atoms. Since
MD templates do not explicitly provide geometry,these atoms will not be built.  

> isolde sim start /F:14

ISOLDE: started sim  

> isolde sim stop

Sim termination reason: None  
ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
chains...  
ISOLDE: stopped sim  

> show sel atoms

> delete atoms (#!1.2 & sel)

> delete bonds (#!1.2 & sel)

> select up

6 atoms, 5 bonds, 1 residue, 1 model selected  

> delete atoms (#!1.2 & sel)

> delete bonds (#!1.2 & sel)

> isolde add aa cys sel

> ui tool show Rotamers

> swapaa interactive sel CYH rotLib Dunbrack

/F CYS 14: phi -143.5, psi none trans  
No rotamers for CYH in Dunbrack rotamer library  

> swapaa interactive sel CYD rotLib Dunbrack

/F CYS 14: phi -143.5, psi none trans  
No rotamers for CYD in Dunbrack rotamer library  

> delete atoms (#!1.2 & sel)

> delete bonds (#!1.2 & sel)

> ui tool show "Build Structure"

> build modify /F:14@SG C 4 geometry tetrahedral name C1 resName UNK

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  

> addh

Summary of feedback from adding hydrogens to 1dn2_clean.pdb #1.2  
---  
warnings | Not adding hydrogens to /F UNK 14 HA because it is missing heavy-
atom bond partners  
Not adding hydrogens to /F UNK 14 HB2 because it is missing heavy-atom bond
partners  
Not adding hydrogens to /F UNK 14 HB3 because it is missing heavy-atom bond
partners  
Not adding hydrogens to /F UNK 14 C1 because it is missing heavy-atom bond
partners  
Not adding hydrogens to /F UNK 14 H11 because it is missing heavy-atom bond
partners  
2 messages similar to the above omitted  
notes | Termini for 1dn2_clean.pdb (#1.2) chain A determined from SEQRES
records  
Termini for 1dn2_clean.pdb (#1.2) chain B determined from SEQRES records  
No usable SEQRES records for 1dn2_clean.pdb (#1.2) chain F; guessing termini
instead  
Chain-initial residues that are actual N termini: /A GLY 237, /B GLY 237, /F
ASP 1  
Chain-initial residues that are not actual N termini: /F ASP 1  
Chain-final residues that are actual C termini: /A LEU 443, /B LEU 443, /F UNK
14  
Chain-final residues that are not actual C termini: /F UNK 14  
Missing OXT added to C-terminal residue /F UNK 14  
328 hydrogen bonds  
0 hydrogens added  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 210, in
_update_graphics_if_needed  
self.track_whole_model = True  
^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/drawing.py", line 266, in __setattr__  
super(Drawing, self).__setattr__(key, value)  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 108, in
track_whole_model  
self.update_graphics()  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  

> build modify /F:14@C1 C 4 geometry tetrahedral

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  

> build modify /F:14@C1 C 4 geometry tetrahedral

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  

> select clear

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  

> show atoms

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  

> build modify /F:14@H11 S 2 geometry tetrahedral name S1

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  

> select clear

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  

> isolde sim start /F:14

ISOLDE: stopped sim  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/toolbar/tool.py", line 205, in callback  
bundle_info.run_provider(session, name, session.toolbar,
display_name=display_name)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/toolshed/info.py", line 397, in run_provider  
return api._api_caller.run_provider(api, session, name, mgr, **kw)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/toolshed/__init__.py", line 1302, in run_provider  
return cls._get_func(api, "run_provider")(session, name, mgr, **kw)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/__init__.py", line 183, in run_provider  
toolbar_command(session, name)  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/toolbar.py", line 21, in toolbar_command  
run(session, f'isolde sim start {_current_residue_sel_string(session)}')  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/run.py", line 49, in run  
results = command.run(text, log=log, return_json=return_json)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/cli.py", line 2908, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/cmd/cmd.py", line 122, in isolde_sim  
isolde.start_sim()  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/isolde.py", line 876, in start_sim  
sm = self._sim_manager = SimManager(self, self.selected_model, main_sel,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/openmm/openmm_interface.py", line 305, in __init__  
self._prepare_validation_managers(mobile_atoms)  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/openmm/openmm_interface.py", line 487, in
_prepare_validation_managers  
self.rama_annotator.restrict_to_selected_residues(mobile_res)  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 179, in
restrict_to_selected_residues  
self.update_graphics()  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  

MD template ZM for residue UNK F14 contains extra atoms that are not in a
coordinate template, and are not directly connected to existing atoms. Since
MD templates do not explicitly provide geometry,these atoms will not be built.  

Failed to add atoms ['H2', 'H3'] to atom N because this will lead to having 5
atoms attached, which is more than its assigned geometry can support. This is
probably due to an error in the MD template (ZM). If this template is built
into ISOLDE, please report this using Help/Report a bug  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  

MD template CMET for residue UNK F14 contains extra atoms that are not in a
coordinate template, and are not directly connected to existing atoms. Since
MD templates do not explicitly provide geometry,these atoms will not be built.  

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  

> build modify /F:14@CE H 2 geometry tetrahedral name H1

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  

> select clear

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  

> delete atoms (#!1.2 & sel)

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  

> delete bonds (#!1.2 & sel)

> addh

Summary of feedback from adding hydrogens to 1dn2_clean.pdb #1.2  
---  
warnings | Not adding hydrogens to /F UNK 14 HA because it is missing heavy-
atom bond partners  
Not adding hydrogens to /F UNK 14 HB2 because it is missing heavy-atom bond
partners  
Not adding hydrogens to /F UNK 14 HB3 because it is missing heavy-atom bond
partners  
Not adding hydrogens to /F UNK 14 S1 because it is missing heavy-atom bond
partners  
Not adding hydrogens to /F UNK 14 H12 because it is missing heavy-atom bond
partners  
1 messages similar to the above omitted  
notes | Termini for 1dn2_clean.pdb (#1.2) chain A determined from SEQRES
records  
Termini for 1dn2_clean.pdb (#1.2) chain B determined from SEQRES records  
No usable SEQRES records for 1dn2_clean.pdb (#1.2) chain F; guessing termini
instead  
Chain-initial residues that are actual N termini: /A GLY 237, /B GLY 237, /F
ASP 1  
Chain-initial residues that are not actual N termini: /F ASP 1  
Chain-final residues that are actual C termini: /A LEU 443, /B LEU 443, /F UNK
14  
Chain-final residues that are not actual C termini: /F UNK 14  
328 hydrogen bonds  
0 hydrogens added  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  

> show atoms

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  

> select clear

> show atoms

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  

> isolde sim start /F:14

ISOLDE: stopped sim  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/toolbar/tool.py", line 205, in callback  
bundle_info.run_provider(session, name, session.toolbar,
display_name=display_name)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/toolshed/info.py", line 397, in run_provider  
return api._api_caller.run_provider(api, session, name, mgr, **kw)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/toolshed/__init__.py", line 1302, in run_provider  
return cls._get_func(api, "run_provider")(session, name, mgr, **kw)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/__init__.py", line 183, in run_provider  
toolbar_command(session, name)  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/toolbar.py", line 21, in toolbar_command  
run(session, f'isolde sim start {_current_residue_sel_string(session)}')  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/run.py", line 49, in run  
results = command.run(text, log=log, return_json=return_json)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/cli.py", line 2908, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/cmd/cmd.py", line 122, in isolde_sim  
isolde.start_sim()  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/isolde.py", line 876, in start_sim  
sm = self._sim_manager = SimManager(self, self.selected_model, main_sel,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/openmm/openmm_interface.py", line 305, in __init__  
self._prepare_validation_managers(mobile_atoms)  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/openmm/openmm_interface.py", line 487, in
_prepare_validation_managers  
self.rama_annotator.restrict_to_selected_residues(mobile_res)  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 179, in
restrict_to_selected_residues  
self.update_graphics()  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Fetching CCD FME from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/E/FME/FME.cif  
Fetching CCD AME from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/E/AME/AME.cif  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  

MD template CXM for residue UNK F14 contains extra atoms that are not in a
coordinate template, and are not directly connected to existing atoms. Since
MD templates do not explicitly provide geometry,these atoms will not be built.  

Failed to add atoms ['CN'] to atom N because this will lead to having 4 atoms
attached, which is more than its assigned geometry can support. This is
probably due to an error in the MD template (CXM). If this template is built
into ISOLDE, please report this using Help/Report a bug  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/validation/rama_annotation.py", line 239, in
update_graphics  
coords, colors, selecteds = mgr._ca_positions_colors_and_selecteds(ramas,
self.hide_favored)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
IndexError: No dihedral with that name is registered for this residue type!  
  
Error processing trigger "changes done":  
IndexError: No dihedral with that name is registered for this residue type!  
  
File "/Users/ts3435/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/isolde/molobject.py", line 1207, in
_ca_positions_colors_and_selecteds  
count = f(self._c_pointer, ramas._c_pointers, n, hide_favored,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  




OpenGL version: 4.1 Metal - 89.4
OpenGL renderer: Apple M3 Max
OpenGL vendor: Apple

Python: 3.11.2
Locale: en_US.UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: Mac15,9
      Model Number: Z1CM000EEB/A
      Chip: Apple M3 Max
      Total Number of Cores: 16 (12 performance and 4 efficiency)
      Memory: 64 GB
      System Firmware Version: 11881.101.1
      OS Loader Version: 11881.101.1

Software:

    System Software Overview:

      System Version: macOS 15.4 (24E248)
      Kernel Version: Darwin 24.4.0
      Time since boot: 5 days, 2 hours, 15 minutes

Graphics/Displays:

    Apple M3 Max:

      Chipset Model: Apple M3 Max
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 40
      Vendor: Apple (0x106b)
      Metal Support: Metal 3
      Displays:
        Color LCD:
          Display Type: Built-in Liquid Retina XDR Display
          Resolution: 3456 x 2234 Retina
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes
          Connection Type: Internal
        DELL P2421:
          Resolution: 1920 x 1200 (WUXGA - Widescreen Ultra eXtended Graphics Array)
          UI Looks like: 1920 x 1200 @ 60.00Hz
          Mirror: Off
          Online: Yes
          Rotation: Supported
        DELL P2422H:
          Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
          UI Looks like: 1920 x 1080 @ 60.00Hz
          Mirror: Off
          Online: Yes
          Rotation: Supported


Installed Packages:
    alabaster: 0.7.16
    appdirs: 1.4.4
    appnope: 0.1.3
    asttokens: 2.4.1
    Babel: 2.14.0
    backcall: 0.2.0
    beautifulsoup4: 4.11.2
    blockdiag: 3.0.0
    blosc2: 2.0.0
    build: 0.10.0
    certifi: 2022.12.7
    cftime: 1.6.3
    charset-normalizer: 3.3.2
    ChimeraX-AddCharge: 1.5.13
    ChimeraX-AddH: 2.2.5
    ChimeraX-AlignmentAlgorithms: 2.0.1
    ChimeraX-AlignmentHdrs: 3.4.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.12.2
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.1.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.49.1
    ChimeraX-AtomicLibrary: 12.1.5
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3.2
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.10.5
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.2
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.3.2
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-Clipper: 0.22.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.5
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.7.1
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2
    ChimeraX-DistMonitor: 1.4
    ChimeraX-DockPrep: 1.1.3
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ISOLDE: 1.7.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-Label: 1.1.8
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.1.6
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.1.4
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.2
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.6.1
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.12.1
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.14
    ChimeraX-ModelPanel: 1.4
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.1
    ChimeraX-NRRD: 1.1
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.13.1
    ChimeraX-PDB: 2.7.3
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-PICKLUSTER: 0.5
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.2
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.11
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.2
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.12.4
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1.2
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.2.2
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.33.3
    ChimeraX-uniprot: 2.3
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.3.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.3
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.1
    contourpy: 1.2.0
    cxservices: 1.2.2
    cycler: 0.12.1
    Cython: 0.29.33
    debugpy: 1.8.0
    decorator: 5.1.1
    docutils: 0.19
    executing: 2.0.1
    filelock: 3.9.0
    fonttools: 4.47.2
    funcparserlib: 2.0.0a0
    glfw: 2.6.4
    grako: 3.16.5
    h5py: 3.10.0
    html2text: 2020.1.16
    idna: 3.6
    ihm: 0.38
    imagecodecs: 2023.9.18
    imagesize: 1.4.1
    ipykernel: 6.23.2
    ipython: 8.14.0
    ipython-genutils: 0.2.0
    ipywidgets: 8.1.1
    jedi: 0.18.2
    Jinja2: 3.1.2
    jupyter-client: 8.2.0
    jupyter-core: 5.7.1
    jupyterlab-widgets: 3.0.9
    kiwisolver: 1.4.5
    line-profiler: 4.0.2
    lxml: 4.9.2
    lz4: 4.3.2
    MarkupSafe: 2.1.4
    matplotlib: 3.7.2
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.6.0
    netCDF4: 1.6.2
    networkx: 3.1
    nibabel: 5.0.1
    nptyping: 2.5.0
    numexpr: 2.8.8
    numpy: 1.25.1
    openvr: 1.23.701
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pexpect: 4.9.0
    pickleshare: 0.7.5
    pillow: 10.2.0
    pip: 23.0
    pkginfo: 1.9.6
    platformdirs: 4.1.0
    prompt-toolkit: 3.0.43
    psutil: 5.9.5
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    py-cpuinfo: 9.0.0
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.16.1
    pynrrd: 1.0.0
    PyOpenGL: 3.1.7
    PyOpenGL-accelerate: 3.1.7
    pyopenxr: 1.0.2801
    pyparsing: 3.0.9
    pyproject-hooks: 1.0.0
    PyQt6-commercial: 6.3.1
    PyQt6-Qt6: 6.3.2
    PyQt6-sip: 13.4.0
    PyQt6-WebEngine-commercial: 6.3.1
    PyQt6-WebEngine-Qt6: 6.3.2
    python-dateutil: 2.8.2
    pytz: 2023.3.post1
    pyzmq: 25.1.2
    qtconsole: 5.4.3
    QtPy: 2.4.1
    RandomWords: 0.4.0
    requests: 2.31.0
    scipy: 1.11.1
    setuptools: 67.4.0
    setuptools-scm: 7.0.5
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