![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 6 months ago
Last modified 6 months ago
#17933 closed defect
ChimeraX bug report submission — at Initial Version
| Reported by: | Owned by: | ||
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-15.4.1-arm64-arm-64bit
ChimeraX Version: 1.9 (2024-12-11 19:11:19 UTC)
Description
Last time you used ChimeraX it crashed.
This is a known crash that we are unable to fix. Here is information that may help you avoid this crash. The Qt window toolkit crashed due to a display configuration change, typically when waking from sleep or when an external display is disconnected or connected. This has only been seen on Mac computers. We hope a newer version of Qt will fix it. We update ChimeraX daily builds whenever a new Qt is released. You can check here https://www.cgl.ucsf.edu/chimerax/docs/troubleshoot.html#macdisplay to see if it has been fixed in a newer ChimeraX.
Fatal Python error: Segmentation fault
Current thread 0x0000000202e5cc80 (most recent call first):
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 330 in event_loop
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1054 in init
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1217 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.pdb_lib._load_libs, chimerax.surface._surface, chimerax.map._map, charset_normalizer.md, requests.packages.charset_normalizer.md, requests.packages.chardet.md, PIL._imaging, kiwisolver._cext, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.pdb._pdbio, PIL._imagingmath, lz4._version, lz4.frame._frame, msgpack._cmsgpack, chimerax.core._serialize, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, lxml._elementpath, lxml.etree, psutil._psutil_osx, psutil._psutil_posix (total: 60)
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"incident" : "6EE6C070-D545-4064-80FF-4E36D0581E4B",
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"procLaunch" : "2025-05-30 17:03:30.0307 +0200",
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"procExitAbsTime" : 3447893816931,
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"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
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"codeSigningAuxiliaryInfo" : 0,
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"sleepWakeUUID" : "9140F068-9A09-49AE-B563-843E49DB3F8D",
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"exception" : {"codes":"0x0000000000000001, 0x00001d18f369aaa8","rawCodes":[1,31993000209064],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x00001d18f369aaa8"},
"termination" : {"flags":0,"code":11,"namespace":"SIGNAL","indicator":"Segmentation fault: 11","byProc":"ChimeraX","byPid":943},
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===== Log before crash start =====
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/z.kilic/Downloads/7LFH.cif
Summary of feedback from opening /Users/z.kilic/Downloads/7LFH.cif
---
note | PDBx/mmCIF styling lost on line 20299. Rereading mmCIF file from the beginning.
7LFH.cif title:
Cryo-EM structure of NLRP3 double-ring cage, 6-fold (12-mer) [more info...]
Chain information for 7LFH.cif #1
---
Chain | Description | UniProt
A B C D E F G H I J K L | NACHT,LRR and PYD domains-containing protein 3 | NLRP3_MOUSE 1-1033
> style stick
Changed 76884 atom styles
> style stick
Changed 76884 atom styles
> style sphere
Changed 76884 atom styles
> style sphere
Changed 76884 atom styles
> style ball
Changed 76884 atom styles
> style ball
Changed 76884 atom styles
> style stick
Changed 76884 atom styles
> show cartoons
> style stick
Changed 76884 atom styles
> style ball
Changed 76884 atom styles
> style sphere
Changed 76884 atom styles
> style stick
Changed 76884 atom styles
> show atoms
> hide atoms
> select down
Nothing selected
> select ~sel & ##selected
Nothing selected
> select down
Nothing selected
> open /Users/z.kilic/Downloads/MmCPLs_fit-SCMC-PADI6_250529.cxs
Opened cryosparc_P105_J56_006_volume_map_sharp.mrc as #1, grid size
400,400,400, pixel 2.12, shown at level 0.289, step 1, values float32
Opened cryosparc_P105_J67_007_volume_map_sharp.mrc as #4, grid size
300,300,300, pixel 2.12, shown at level 0.276, step 1, values float32
opened ChimeraX session
> hide atoms
> show #!1 models
> hide #!1 models
> color bychain
> color byhetero
> color bychain
> show cartoons
> volume #!4 style surface
> volume #!4 style mesh
> volume #!4 style image
> open /Users/z.kilic/Downloads/MmCPLs_fit-SCMC-PADI6_250529.cxs
Opened cryosparc_P105_J56_006_volume_map_sharp.mrc as #1, grid size
400,400,400, pixel 2.12, shown at level 0.289, step 1, values float32
Opened cryosparc_P105_J67_007_volume_map_sharp.mrc as #4, grid size
300,300,300, pixel 2.12, shown at level 0.276, step 1, values float32
opened ChimeraX session
> volume #4 level 0.2635
> volume #!4 style mesh
> volume #!4 style surface
> volume #!4 style image
> volume #!4 style surface
> volume #!4 style image
> volume #!4 showOutlineBox true
> volume #!4 style surface
> select
152142 atoms, 155462 bonds, 8 pseudobonds, 19260 residues, 21 models selected
> show #!2 target m
> view #2 clip false
> open /Users/z.kilic/Downloads/MmCPLs_fit-SCMC-PADI6_250529.cxs
Opened cryosparc_P105_J56_006_volume_map_sharp.mrc as #1, grid size
400,400,400, pixel 2.12, shown at level 0.289, step 1, values float32
Opened cryosparc_P105_J67_007_volume_map_sharp.mrc as #4, grid size
300,300,300, pixel 2.12, shown at level 0.276, step 1, values float32
opened ChimeraX session
> show #!2 target m
> view #2 clip false
> view #3 clip false
> view #5 clip false
> color #5 #cb002aff
> color #6 #efef13ff
> color #7 #71ef31ff
> color #7 #efe919ff
> color #8 #cb00efff
> color #8 #24eaccff
> open /Users/z.kilic/Downloads/MmCPLs_fit-SCMC-TUBB_250602.cxs
Opened cryosparc_P105_J104_004_volume_map_deepEM_tight.mrc as #1, grid size
300,300,300, pixel 2.12, shown at level 0.157, step 1, values float32
opened ChimeraX session
> open /Users/z.kilic/Downloads/cryosparc_P105_J41_005_volume_map_sharp.mrc
Opened cryosparc_P105_J41_005_volume_map_sharp.mrc as #6, grid size
400,400,400, pixel 2.12, shown at level 0.211, step 2, values float32
> hide #!2 models
> hide #4 models
> hide #5 models
> hide #!6 models
> close #6
> close #2
> close #1
> select add #3
22389 atoms, 22878 bonds, 16 pseudobonds, 2835 residues, 2 models selected
> select add #4
25885 atoms, 26450 bonds, 16 pseudobonds, 3280 residues, 3 models selected
> select add #5
29381 atoms, 30022 bonds, 16 pseudobonds, 3725 residues, 4 models selected
> close #5
> close
> open /Users/z.kilic/Downloads/cryosparc_P105_J41_005_volume_map_sharp.mrc
Opened cryosparc_P105_J41_005_volume_map_sharp.mrc as #1, grid size
400,400,400, pixel 2.12, shown at level 0.211, step 2, values float32
> volume #1 level 0.2964
> open /Users/z.kilic/Downloads/8h93.cif
8h93.cif title:
Structure of dimeric mouse SCMC core complex [more info...]
Chain information for 8h93.cif #2
---
Chain | Description | UniProt
A D | NACHT, LRR and PYD domains-containing protein 5 | NALP5_MOUSE 1-1059
B E | Transducin-like enhancer protein 6 | TLE6_MOUSE 1-581
C F | Oocyte-expressed protein homolog | OOEP_MOUSE 1-164
> ui mousemode right select
> ui mousemode right "translate selected models"
> hide #!1 models
> show #!1 models
> select add #2
22191 atoms, 22621 bonds, 4 pseudobonds, 2810 residues, 2 models selected
> ui mousemode right "move picked models"
> select ~sel & ##selected
Nothing selected
> select ~sel & ##selected
Nothing selected
> ui mousemode right "move picked models"
> ui mousemode right "translate selected models"
> select add #2
22191 atoms, 22621 bonds, 4 pseudobonds, 2810 residues, 2 models selected
> view matrix models #2,1,0,0,55.847,0,1,0,53.724,0,0,1,169.99
> view matrix models #2,1,0,0,64.124,0,1,0,216.98,0,0,1,116.58
> ui mousemode right "rotate selected models"
> view matrix models
> #2,-0.49935,-0.69873,0.51227,423.82,-0.15297,-0.51087,-0.84594,789,0.85279,-0.50079,0.14822,246
> view matrix models
> #2,0.9364,-0.25098,0.24528,74.272,-0.037652,0.62305,0.78128,119.72,-0.3489,-0.74083,0.57397,459.89
> nucleotides sel atoms
> style nucleic & sel stick
Changed 0 atom styles
> nucleotides sel atoms
> style nucleic & sel stick
Changed 0 atom styles
> style sel stick
Changed 22191 atom styles
> style sel sphere
Changed 22191 atom styles
> style sel sphere
Changed 22191 atom styles
> style sel ball
Changed 22191 atom styles
> nucleotides sel atoms
> style nucleic & sel stick
Changed 0 atom styles
> nucleotides sel fill
> style nucleic & sel stick
Changed 0 atom styles
> nucleotides sel atoms
> style nucleic & sel stick
Changed 0 atom styles
> color sel bychain
> show sel atoms
> show sel cartoons
> view matrix models
> #2,-0.30691,-0.54497,0.78026,283.66,-0.30208,-0.72166,-0.62286,814.58,0.90253,-0.42686,0.056864,239.98
> view matrix models
> #2,-0.69068,-0.4072,0.59762,381.84,-0.43316,-0.42881,-0.79278,819.78,0.57909,-0.80642,0.11979,379.88
> view matrix models
> #2,0.49705,-0.80968,0.31202,278.35,-0.14893,-0.43385,-0.88859,781.47,0.85485,0.3952,-0.33623,163.77
> view matrix models
> #2,0.69254,-0.66585,-0.27753,346.02,-0.65435,-0.41789,-0.63024,826.77,0.30367,0.61807,-0.7251,329.85
> view matrix models
> #2,-0.50443,-0.85206,-0.13982,617.42,-0.79832,0.52192,-0.30046,571.02,0.32898,-0.03994,-0.94349,522.52
> ui mousemode right "translate selected models"
> view matrix models
> #2,-0.50443,-0.85206,-0.13982,640.44,-0.79832,0.52192,-0.30046,588.25,0.32898,-0.03994,-0.94349,581.95
> view matrix models
> #2,-0.50443,-0.85206,-0.13982,886.17,-0.79832,0.52192,-0.30046,592.78,0.32898,-0.03994,-0.94349,641.62
> ui mousemode right "rotate selected models"
> view matrix models
> #2,-0.8738,-0.43398,0.21939,788.25,-0.47546,0.85713,-0.19818,422.88,-0.10204,-0.27748,-0.9553,791.88
> view matrix models
> #2,-0.8105,-0.57388,0.11728,829.92,-0.58507,0.7836,-0.20898,465.86,0.028025,-0.238,-0.97086,758.29
> view matrix models
> #2,0.61848,-0.22214,0.75375,283.71,-0.78475,-0.22427,0.57782,542.42,0.04069,-0.94887,-0.31303,753.63
> view matrix models
> #2,0.72274,-0.11565,0.68138,254.71,-0.6378,-0.49134,0.59312,565.4,0.26619,-0.86325,-0.42887,713.06
> view matrix models
> #2,0.96581,-0.209,0.15342,349.45,-0.24962,-0.58965,0.76812,459.37,-0.070072,-0.78015,-0.62166,815.32
> ui mousemode right "translate selected models"
> view matrix models
> #2,0.96581,-0.209,0.15342,343.9,-0.24962,-0.58965,0.76812,456.95,-0.070072,-0.78015,-0.62166,817.16
> view matrix models
> #2,0.96581,-0.209,0.15342,319.55,-0.24962,-0.58965,0.76812,428.4,-0.070072,-0.78015,-0.62166,776.5
> fitmap #2 inMap #1
Fit molecule 8h93.cif (#2) to map cryosparc_P105_J41_005_volume_map_sharp.mrc
(#1) using 22191 atoms
average map value = 0.258, steps = 208
shifted from previous position = 43.2
rotated from previous position = 36.1 degrees
atoms outside contour = 10956, contour level = 0.29642
Position of 8h93.cif (#2) relative to
cryosparc_P105_J41_005_volume_map_sharp.mrc (#1) coordinates:
Matrix rotation and translation
0.68400830 -0.72905873 -0.02461914 535.30062203
-0.43850573 -0.43791152 0.78482247 396.07759517
-0.58296265 -0.52602942 -0.61923152 808.30192434
Axis -0.90146663 0.38397019 0.19981192
Axis point 0.00000000 513.38405256 353.25900016
Rotation angle (degrees) 133.35899536
Shift along axis -168.96530276
> view matrix models
> #2,0.68401,-0.72906,-0.024619,559.44,-0.43851,-0.43791,0.78482,392.35,-0.58296,-0.52603,-0.61923,810.21
> fitmap #2 inMap #1
Fit molecule 8h93.cif (#2) to map cryosparc_P105_J41_005_volume_map_sharp.mrc
(#1) using 22191 atoms
average map value = 0.2754, steps = 216
shifted from previous position = 36.2
rotated from previous position = 33.4 degrees
atoms outside contour = 10705, contour level = 0.29642
Position of 8h93.cif (#2) relative to
cryosparc_P105_J41_005_volume_map_sharp.mrc (#1) coordinates:
Matrix rotation and translation
0.80502793 -0.38390859 -0.45226574 530.92464660
-0.07215614 -0.82007506 0.56768871 469.58963286
-0.58883241 -0.42437150 -0.68788466 799.74263778
Axis -0.94588219 0.13020982 0.29724113
Axis point 0.00000000 400.12703721 409.01986531
Rotation angle (degrees) 148.37146576
Shift along axis -203.33058251
> fitmap #2 inMap #1
Fit molecule 8h93.cif (#2) to map cryosparc_P105_J41_005_volume_map_sharp.mrc
(#1) using 22191 atoms
average map value = 0.2754, steps = 44
shifted from previous position = 0.0162
rotated from previous position = 0.0738 degrees
atoms outside contour = 10704, contour level = 0.29642
Position of 8h93.cif (#2) relative to
cryosparc_P105_J41_005_volume_map_sharp.mrc (#1) coordinates:
Matrix rotation and translation
0.80544678 -0.38279999 -0.45245966 530.62922843
-0.07103662 -0.82027922 0.56753492 469.44251899
-0.58839559 -0.42497794 -0.68788404 799.78129105
Axis -0.94599853 0.12956527 0.29715251
Axis point 0.00000000 399.89281044 408.97622260
Rotation angle (degrees) 148.35970597
Shift along axis -203.49400987
> view matrix models
> #2,0.80545,-0.3828,-0.45246,168.34,-0.071037,-0.82028,0.56753,389.07,-0.5884,-0.42498,-0.68788,889.57
> ui mousemode right "rotate selected models"
> view matrix models
> #2,0.78328,-0.43274,-0.44632,182.77,-0.11866,-0.80882,0.57596,394.99,-0.61023,-0.39818,-0.68489,887.73
> view matrix models
> #2,0.21258,-0.92321,-0.32016,386.34,-0.65118,-0.37813,0.65801,397.2,-0.72854,0.068598,-0.68156,809.79
> view matrix models
> #2,0.24834,-0.95911,0.13579,276.21,0.55437,0.25568,0.79202,-40.693,-0.79436,-0.12141,0.5952,557.67
> ui mousemode right "translate selected models"
> view matrix models
> #2,0.24834,-0.95911,0.13579,434.01,0.55437,0.25568,0.79202,-13.444,-0.79436,-0.12141,0.5952,571.72
> view matrix models
> #2,0.24834,-0.95911,0.13579,445.56,0.55437,0.25568,0.79202,27.465,-0.79436,-0.12141,0.5952,475.12
> view matrix models
> #2,0.24834,-0.95911,0.13579,435.62,0.55437,0.25568,0.79202,99.979,-0.79436,-0.12141,0.5952,472.25
> ui mousemode right "rotate selected models"
> view matrix models
> #2,0.22596,-0.97287,0.04967,464.41,0.7873,0.21241,0.57883,109.79,-0.57368,-0.091688,0.81393,364.22
> ui mousemode right "translate selected models"
> view matrix models
> #2,0.22596,-0.97287,0.04967,457.94,0.7873,0.21241,0.57883,92.976,-0.57368,-0.091688,0.81393,380.21
> fitmap #2 inMap #1
Fit molecule 8h93.cif (#2) to map cryosparc_P105_J41_005_volume_map_sharp.mrc
(#1) using 22191 atoms
average map value = 0.328, steps = 92
shifted from previous position = 8.46
rotated from previous position = 21.1 degrees
atoms outside contour = 6710, contour level = 0.29642
Position of 8h93.cif (#2) relative to
cryosparc_P105_J41_005_volume_map_sharp.mrc (#1) coordinates:
Matrix rotation and translation
0.55561031 -0.82553541 0.09893717 338.02722762
0.67842167 0.51892526 0.52005835 59.11245083
-0.48066756 -0.22182865 0.84838130 373.75183466
Axis -0.41812380 0.32666233 0.84762268
Axis point 265.58270833 365.15005250 0.00000000
Rotation angle (degrees) 62.51874388
Shift along axis 194.77311534
> hide target m
> show target m
> hide #!1 models
> select /A/D
14957 atoms, 15221 bonds, 2 pseudobonds, 1898 residues, 2 models selected
> select /C/F
1438 atoms, 1472 bonds, 178 residues, 1 model selected
> select /B/E
5796 atoms, 5928 bonds, 2 pseudobonds, 734 residues, 2 models selected
> show #!1 models
> view matrix models
> #2,0.55561,-0.82554,0.098937,345.44,0.67842,0.51893,0.52006,47.648,-0.48067,-0.22183,0.84838,423.89
> view matrix models
> #2,0.55561,-0.82554,0.098937,528.38,0.67842,0.51893,0.52006,159.73,-0.48067,-0.22183,0.84838,295.74
> view matrix models
> #2,0.55561,-0.82554,0.098937,581.92,0.67842,0.51893,0.52006,16.657,-0.48067,-0.22183,0.84838,302.89
> view matrix models
> #2,0.55561,-0.82554,0.098937,562.98,0.67842,0.51893,0.52006,93.049,-0.48067,-0.22183,0.84838,371.66
> view matrix models
> #2,0.55561,-0.82554,0.098937,631.89,0.67842,0.51893,0.52006,184.6,-0.48067,-0.22183,0.84838,358.78
> view matrix models
> #2,0.55561,-0.82554,0.098937,557.81,0.67842,0.51893,0.52006,88.413,-0.48067,-0.22183,0.84838,373.51
> view matrix models
> #2,0.55561,-0.82554,0.098937,546.89,0.67842,0.51893,0.52006,149.61,-0.48067,-0.22183,0.84838,405.68
> select add #2
22191 atoms, 22621 bonds, 4 pseudobonds, 2810 residues, 2 models selected
> close
> open /Users/z.kilic/Downloads/MmCPLs_playground.cxs
Opened cryosparc_P105_J104_004_volume_map_deepEM_tight.mrc as #1, grid size
300,300,300, pixel 2.12, shown at level 0.0305, step 1, values float32
Opened MmCPLs_UNK4.mrc as #7, grid size 32,32,38, pixel 2.12,2.12,2.12, shown
at level 0.159, step 1, values float32
Opened MmCPLs_UNK1.mrc as #16, grid size 32,32,32, pixel 2.12, shown at level
0.193, step 1, values float32
Opened MmCPLs_UNK2.mrc as #20, grid size 34,34,34, pixel 2.12, shown at level
0.226, step 1, values float32
opened ChimeraX session
> save /Users/z.kilic/Desktop/Chimeraimages/250408_25oocytesin20ul_figure.png
> width 2000 height 1321 supersample 4
> view name front
> view front
> view list
Named views: front
> view front
> save /Users/z.kilic/Desktop/Chimeraimages/listed.cxs includeMaps true
> ui mousemode right clip
> view name clipped
> view list
Named views: clipped, front
> view clipped
> clip off
> select #19/A#19/B
6907 atoms, 7069 bonds, 870 residues, 1 model selected
> select #2
22191 atoms, 22621 bonds, 4 pseudobonds, 2810 residues, 2 models selected
> select clear
Drag select of 47 residues
> select clear
> select #2/E
2898 atoms, 2964 bonds, 1 pseudobond, 367 residues, 2 models selected
> color sel red
> color sel #6A5ACD
> ui mousemode right clip
> clip off
> ui mousemode right clip
> ui mousemode right translate
> color #2/B #6A5acd
> hide #!1 models
> hide #!2 models
> show #!1 models
> hide #4-6,8-13,15,17-19,21-23#!2-3,7,14,16,20 target m
> volume #1 color #b2b2b2
> color zone #1 near #2/B distance 5
> color zone #1 near #2-23 distance 5
> show #19 models
> show #4 models
> hide #!1 models
> show #5 models
> color #4,5,19 pink
> show #!1 models
> hide #4 models
> hide #5 models
> hide #19 models
> color zone #1 near #2-23 distance 5
> hide #!1 models
> show #18 models
> hide #18 models
> show #!1 models
> hide #!1 models
> show #!2 models
> select #2/B
2898 atoms, 2964 bonds, 1 pseudobond, 367 residues, 2 models selected
> save /Users/z.kilic/Desktop/Chimeraimages/TLE6_1.pdb models #2 selectedOnly
> true
> hide #!2 models
> open /Users/z.kilic/Desktop/Chimeraimages/TLE6_1.pdb
Summary of feedback from opening
/Users/z.kilic/Desktop/Chimeraimages/TLE6_1.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 ASP A 97 PHE A 109 1 13
Start residue of secondary structure not found: HELIX 2 2 SER A 119 PHE A 129
1 11
Start residue of secondary structure not found: HELIX 3 3 GLY A 150 GLY A 165
1 16
Start residue of secondary structure not found: HELIX 4 4 ARG A 180 ILE A 182
1 3
Start residue of secondary structure not found: HELIX 5 5 SER A 189 CYS A 198
1 10
170 messages similar to the above omitted
Chain information for TLE6_1.pdb #24
---
Chain | Description
B | No description available
> show #!1 models
> volume #1 color #b2b2b245
> open /Users/z.kilic/Downloads/AF-P68373-F1-model_v4.pdb
AF-P68373-F1-model_v4.pdb title:
Alphafold monomer V2.0 prediction for tubulin α-1C chain (P68373) [more
info...]
Chain information for AF-P68373-F1-model_v4.pdb #25
---
Chain | Description | UniProt
A | tubulin α-1C chain | TBA1C_MOUSE 1-449
Computing secondary structure
> hide #!24 models
> view
> select add #25
6406 atoms, 6551 bonds, 1 pseudobond, 816 residues, 3 models selected
> ui mousemode right "translate selected models"
> view matrix models
> #2,0.30996,0.86164,0.40188,293.94,-0.82022,0.4561,-0.34527,846.21,-0.4808,-0.2226,0.84811,420.6,#25,1,0,0,249.08,0,1,0,271.84,0,0,1,152.06
> view matrix models
> #2,0.30996,0.86164,0.40188,235.05,-0.82022,0.4561,-0.34527,877.35,-0.4808,-0.2226,0.84811,413.2,#25,1,0,0,190.18,0,1,0,302.98,0,0,1,144.66
> view matrix models
> #2,0.30996,0.86164,0.40188,244.63,-0.82022,0.4561,-0.34527,840.45,-0.4808,-0.2226,0.84811,517.06,#25,1,0,0,199.76,0,1,0,266.08,0,0,1,248.52
> view matrix models
> #2,0.30996,0.86164,0.40188,291.78,-0.82022,0.4561,-0.34527,815.58,-0.4808,-0.2226,0.84811,511.63,#25,1,0,0,246.92,0,1,0,241.21,0,0,1,243.09
> view matrix models
> #2,0.30996,0.86164,0.40188,284.02,-0.82022,0.4561,-0.34527,811.76,-0.4808,-0.2226,0.84811,511.92,#25,1,0,0,239.16,0,1,0,237.39,0,0,1,243.38
> view matrix models
> #2,0.30996,0.86164,0.40188,291.93,-0.82022,0.4561,-0.34527,844.61,-0.4808,-0.2226,0.84811,502.51,#25,1,0,0,247.07,0,1,0,270.24,0,0,1,233.97
> ui mousemode right "translate selected models"
> view matrix models
> #2,0.30996,0.86164,0.40188,525.84,-0.82022,0.4561,-0.34527,787.03,-0.4808,-0.2226,0.84811,525.98,#25,1,0,0,480.97,0,1,0,212.66,0,0,1,257.44
> view matrix models
> #2,0.30996,0.86164,0.40188,664.42,-0.82022,0.4561,-0.34527,782.94,-0.4808,-0.2226,0.84811,535.22,#25,1,0,0,619.56,0,1,0,208.57,0,0,1,266.68
> select add #1
6406 atoms, 6551 bonds, 1 pseudobond, 816 residues, 5 models selected
> view matrix models
> #1,1,0,0,139.59,0,1,0,86.245,0,0,1,-18.369,#2,0.30996,0.86164,0.40188,804.01,-0.82022,0.4561,-0.34527,869.19,-0.4808,-0.2226,0.84811,516.85,#25,1,0,0,759.15,0,1,0,294.81,0,0,1,248.31
> view matrix models
> #1,1,0,0,161.16,0,1,0,67.6,0,0,1,-22.536,#2,0.30996,0.86164,0.40188,825.58,-0.82022,0.4561,-0.34527,850.54,-0.4808,-0.2226,0.84811,512.68,#25,1,0,0,780.72,0,1,0,276.17,0,0,1,244.14
> undo
> select subtract #1
6406 atoms, 6551 bonds, 1 pseudobond, 816 residues, 3 models selected
> view matrix models
> #2,0.30996,0.86164,0.40188,618.69,-0.82022,0.4561,-0.34527,805.42,-0.4808,-0.2226,0.84811,543.34,#25,1,0,0,573.83,0,1,0,231.05,0,0,1,274.8
> view matrix models
> #2,0.30996,0.86164,0.40188,701.37,-0.82022,0.4561,-0.34527,834.84,-0.4808,-0.2226,0.84811,531.56,#25,1,0,0,656.51,0,1,0,260.47,0,0,1,263.02
> ui mousemode right "rotate selected models"
> view matrix models
> #2,0.51402,0.058056,-0.85581,336.76,0.8573,-0.001396,0.51482,-229.81,0.028694,-0.99831,-0.050489,8.0598,#25,-0.13458,-0.099646,-0.98588,664.78,0.47142,-0.88156,0.024751,248.74,-0.87158,-0.46143,0.16561,267.72
> view matrix models
> #2,0.20766,-0.044497,-0.97719,488.78,0.93369,0.30692,0.18444,-216.43,0.29171,-0.95069,0.10528,-129.79,#25,-0.36668,0.14677,-0.9187,667.64,0.62799,-0.68953,-0.36081,248.33,-0.68642,-0.70923,0.16067,265.23
> view matrix models
> #2,-0.017287,-0.34616,-0.93801,552.46,0.99855,-0.053788,0.0014471,-347.88,-0.050955,-0.93663,0.34659,86.845,#25,-0.68059,0.18016,-0.71017,670.22,0.26375,-0.84406,-0.4669,250.48,-0.68354,-0.50507,0.52694,266.1
> view matrix models
> #2,-0.70412,-0.68962,-0.16925,911.15,-0.025588,0.26284,-0.9645,291.99,0.70962,-0.67479,-0.20271,-325.37,#25,-0.88047,0.32143,0.34851,672.44,-0.16907,0.47388,-0.8642,259.46,-0.44293,-0.81983,-0.3629,262.84
> view matrix models
> #2,-0.47577,-0.84196,0.25446,758.12,-0.64827,0.14013,-0.74841,641.08,0.59447,-0.52103,-0.61249,-238.45,#25,-0.77067,-0.081642,0.63198,669.88,-0.38096,0.85404,-0.35424,262.76,-0.51082,-0.51376,-0.68929,264.66
> view matrix models
> #2,-0.46476,-0.84565,0.26244,751.07,-0.66285,0.13578,-0.73634,649.21,0.58705,-0.51618,-0.62364,-233.39,#25,-0.76723,-0.095108,0.63428,669.79,-0.38438,0.85985,-0.33602,262.81,-0.51342,-0.50161,-0.69626,264.73
> ui mousemode right "translate selected models"
> view matrix models
> #2,-0.46476,-0.84565,0.26244,677.11,-0.66285,0.13578,-0.73634,704.3,0.58705,-0.51618,-0.62364,-172.6,#25,-0.76723,-0.095108,0.63428,595.83,-0.38438,0.85985,-0.33602,317.9,-0.51342,-0.50161,-0.69626,325.52
> view matrix models
> #2,-0.46476,-0.84565,0.26244,589.33,-0.66285,0.13578,-0.73634,778.85,0.58705,-0.51618,-0.62364,-102.78,#25,-0.76723,-0.095108,0.63428,508.05,-0.38438,0.85985,-0.33602,392.46,-0.51342,-0.50161,-0.69626,395.34
> view matrix models
> #2,-0.46476,-0.84565,0.26244,564.97,-0.66285,0.13578,-0.73634,692.47,0.58705,-0.51618,-0.62364,-56.063,#25,-0.76723,-0.095108,0.63428,483.69,-0.38438,0.85985,-0.33602,306.08,-0.51342,-0.50161,-0.69626,442.06
> ui mousemode right "rotate selected models"
> view matrix models
> #2,0.10979,0.87899,0.46403,640.59,-0.90347,0.28287,-0.32208,887.5,-0.41436,-0.38388,0.82519,630.48,#25,0.97788,0.15064,0.1451,471.23,-0.16574,0.98126,0.098258,304.94,-0.12758,-0.12013,0.98453,440.82
> ui mousemode right "translate selected models"
> view matrix models
> #2,0.10979,0.87899,0.46403,663.59,-0.90347,0.28287,-0.32208,808.72,-0.41436,-0.38388,0.82519,510.95,#25,0.97788,0.15064,0.1451,494.23,-0.16574,0.98126,0.098258,226.16,-0.12758,-0.12013,0.98453,321.29
> view matrix models
> #2,0.10979,0.87899,0.46403,655.1,-0.90347,0.28287,-0.32208,822.23,-0.41436,-0.38388,0.82519,546.15,#25,0.97788,0.15064,0.1451,485.74,-0.16574,0.98126,0.098258,239.67,-0.12758,-0.12013,0.98453,356.49
> view matrix models
> #2,0.10979,0.87899,0.46403,571.83,-0.90347,0.28287,-0.32208,902.85,-0.41436,-0.38388,0.82519,559.55,#25,0.97788,0.15064,0.1451,402.47,-0.16574,0.98126,0.098258,320.29,-0.12758,-0.12013,0.98453,369.89
> view matrix models
> #2,0.10979,0.87899,0.46403,594.64,-0.90347,0.28287,-0.32208,874.18,-0.41436,-0.38388,0.82519,515.58,#25,0.97788,0.15064,0.1451,425.28,-0.16574,0.98126,0.098258,291.62,-0.12758,-0.12013,0.98453,325.92
> view matrix models
> #2,0.10979,0.87899,0.46403,593.25,-0.90347,0.28287,-0.32208,831.22,-0.41436,-0.38388,0.82519,498.53,#25,0.97788,0.15064,0.1451,423.89,-0.16574,0.98126,0.098258,248.66,-0.12758,-0.12013,0.98453,308.87
> view matrix models
> #2,0.10979,0.87899,0.46403,591.35,-0.90347,0.28287,-0.32208,828.12,-0.41436,-0.38388,0.82519,504.78,#25,0.97788,0.15064,0.1451,421.99,-0.16574,0.98126,0.098258,245.56,-0.12758,-0.12013,0.98453,315.11
> view matrix models
> #2,0.10979,0.87899,0.46403,604.3,-0.90347,0.28287,-0.32208,842.1,-0.41436,-0.38388,0.82519,470.05,#25,0.97788,0.15064,0.1451,434.95,-0.16574,0.98126,0.098258,259.54,-0.12758,-0.12013,0.98453,280.39
> view matrix models
> #2,0.10979,0.87899,0.46403,609.57,-0.90347,0.28287,-0.32208,811.45,-0.41436,-0.38388,0.82519,439.58,#25,0.97788,0.15064,0.1451,440.22,-0.16574,0.98126,0.098258,228.89,-0.12758,-0.12013,0.98453,249.92
> view matrix models
> #2,0.10979,0.87899,0.46403,584.62,-0.90347,0.28287,-0.32208,775.21,-0.41436,-0.38388,0.82519,437.88,#25,0.97788,0.15064,0.1451,415.26,-0.16574,0.98126,0.098258,192.65,-0.12758,-0.12013,0.98453,248.22
> view matrix models
> #2,0.10979,0.87899,0.46403,581.21,-0.90347,0.28287,-0.32208,843.42,-0.41436,-0.38388,0.82519,487.18,#25,0.97788,0.15064,0.1451,411.85,-0.16574,0.98126,0.098258,260.86,-0.12758,-0.12013,0.98453,297.51
> view matrix models
> #2,0.10979,0.87899,0.46403,410.34,-0.90347,0.28287,-0.32208,832.98,-0.41436,-0.38388,0.82519,437.6,#25,0.97788,0.15064,0.1451,240.98,-0.16574,0.98126,0.098258,250.42,-0.12758,-0.12013,0.98453,247.94
> view matrix models
> #2,0.10979,0.87899,0.46403,440.64,-0.90347,0.28287,-0.32208,851.92,-0.41436,-0.38388,0.82519,466.32,#25,0.97788,0.15064,0.1451,271.28,-0.16574,0.98126,0.098258,269.36,-0.12758,-0.12013,0.98453,276.66
> view matrix models
> #2,0.10979,0.87899,0.46403,467.2,-0.90347,0.28287,-0.32208,839.95,-0.41436,-0.38388,0.82519,439.9,#25,0.97788,0.15064,0.1451,297.84,-0.16574,0.98126,0.098258,257.39,-0.12758,-0.12013,0.98453,250.24
> ui mousemode right "rotate selected models"
> view matrix models
> #2,0.13076,-0.51217,-0.84887,69.916,0.65456,0.68768,-0.31408,13.122,0.74462,-0.51457,0.42517,-294.55,#25,-0.74191,-0.04776,-0.66879,310.23,0.6692,-0.11478,-0.73416,246.18,-0.041704,-0.99224,0.11712,245.78
> view matrix models
> #2,-0.34175,-0.43583,-0.83262,368.49,0.70126,0.47156,-0.53467,-75.038,0.62566,-0.7666,0.14448,-295.66,#25,-0.81607,0.369,-0.44482,312.61,0.40881,-0.1755,-0.89559,247.92,-0.40854,-0.91271,-0.007635,248.95
> view matrix models
> #2,-0.64733,-0.17205,-0.74253,615.63,0.4655,0.68216,-0.56388,113.07,0.60355,-0.71067,-0.3615,-291.08,#25,-0.6473,0.70886,-0.28021,312.77,0.50546,0.12402,-0.85389,248.47,-0.57054,-0.69436,-0.43857,251.11
> view matrix models
> #2,-0.77526,-0.40639,-0.48355,647.18,0.3776,0.3155,-0.87056,65.38,0.50635,-0.8575,-0.091143,-256.58,#25,-0.78479,0.61749,0.053107,313.46,0.039034,0.13476,-0.99011,252.11,-0.61853,-0.77495,-0.12986,251.15
> view matrix models
> #2,0.5457,-0.82012,0.17211,-204.73,0.098882,-0.14093,-0.98507,117.76,0.83213,0.55457,0.0041896,-111.99,#25,-0.46833,-0.88107,0.066158,304.58,-0.48666,0.19473,-0.85161,256.44,0.73745,-0.43103,-0.51998,242.13
> view matrix models
> #2,-0.18095,-0.97416,0.13517,187.68,-0.63394,0.010451,-0.77331,596.62,0.75192,-0.22562,-0.61945,-275.49,#25,-0.84114,-0.34257,0.41849,309.8,-0.49827,0.79174,-0.35339,259.12,-0.21027,-0.50576,-0.83665,249.11
> view matrix models
> #2,-0.90742,0.01432,0.41998,863.59,0.24374,0.83207,0.49825,325.41,-0.34232,0.55448,-0.75853,550.83,#25,-0.10015,0.60581,0.78928,308.17,0.99273,0.0075602,0.12016,244.26,0.066825,0.79558,-0.60216,252.58
> view matrix models
> #2,-0.62412,0.11801,0.77236,735.42,0.7208,0.46846,0.51088,-42.459,-0.30153,0.87557,-0.37744,618.85,#25,0.21862,0.29907,0.92885,304.4,0.83237,-0.55394,-0.017559,243.08,0.50927,0.77699,-0.37004,249.09
> view matrix models
> #2,-0.83752,-0.52252,-0.15981,670.53,-0.51392,0.85262,-0.094459,753.55,0.18561,0.0030187,-0.98262,98.308,#25,-0.77404,0.5038,0.38345,312.91,0.5374,0.84302,-0.022819,251.36,-0.33476,0.1884,-0.92328,253.05
> view matrix models
> #2,-0.27666,-0.9591,-0.059858,239.55,-0.56135,0.21186,-0.8,600.04,0.77996,-0.18773,-0.597,-282.19,#25,-0.93621,-0.18986,0.29575,311.18,-0.31296,0.83328,-0.45575,257.86,-0.15992,-0.51924,-0.83954,248.66
> view matrix models
> #2,-0.51077,-0.36329,0.77919,554.92,-0.79076,-0.15712,-0.59161,657.74,0.33736,-0.91833,-0.20703,-175.83,#25,-0.15821,-0.015791,0.98728,305.96,-0.61824,0.7812,-0.086577,260.02,-0.7699,-0.62408,-0.13336,252.97
> view matrix models
> #2,-0.034899,-0.23678,0.97094,311.18,-0.25442,-0.93742,-0.23775,171.01,0.96646,-0.25532,-0.027525,-384.16,#25,0.17536,-0.41461,0.89294,301.66,-0.98212,-0.13679,0.12936,258.9,0.068509,-0.89966,-0.43118,245.29
> view matrix models
> #2,-0.74394,0.66751,-0.031528,901.62,-0.66405,-0.74372,-0.076964,466.26,-0.074822,-0.036321,0.99654,328.23,#25,0.33189,0.92553,0.18235,306.17,-0.87757,0.23203,0.41955,259.7,0.346,-0.29927,0.88923,245.81
> view matrix models
> #2,-0.3241,-0.41757,-0.84888,361.65,0.63344,0.57068,-0.52257,-10.949,0.70265,-0.70708,0.079552,-329.99,#25,-0.8014,0.36847,-0.47116,312.49,0.47805,-0.078843,-0.87479,247.81,-0.35948,-0.92629,-0.11296,248.5
> view matrix models
> #2,-0.82754,-0.2037,-0.52316,724.31,0.499,0.16015,-0.85168,-42.393,0.25727,-0.96585,-0.030883,-132.06,#25,-0.64226,0.76648,-0.0004723,313,-0.049608,-0.042183,-0.99788,252.03,-0.76488,-0.64088,0.065116,252.87
> view matrix models
> #2,0.096334,-0.62715,-0.77292,66.416,0.31349,0.75613,-0.57445,220.11,0.94469,-0.18696,0.26944,-342.38,#25,-0.82113,-0.098189,-0.56223,310.63,0.51782,0.28608,-0.80624,249.07,0.24001,-0.95316,-0.18407,243.75
> view matrix models
> #2,-0.80024,-0.59498,-0.074936,634.98,0.13727,-0.060107,-0.98871,113.95,0.58376,-0.80149,0.12978,-279.72,#25,-0.79082,0.41087,0.45364,312.65,-0.40658,0.20136,-0.89115,255.84,-0.45749,-0.88918,0.0078092,249.43
> view matrix models
> #2,0.18339,-0.74059,-0.64645,-6.5005,-0.69731,-0.56153,0.44548,551.41,-0.69292,0.36908,-0.61939,720.67,#25,-0.84107,-0.265,-0.47158,310.07,-0.52094,0.16202,0.83807,256.67,-0.14568,0.95054,-0.27432,254.9
> view matrix models
> #2,-0.77889,0.041247,0.6258,802.66,0.41694,0.77945,0.46757,209.08,-0.46849,0.62511,-0.62431,647.99,#25,0.045606,0.4416,0.89605,306.34,0.98874,-0.14791,0.022573,243.62,0.14251,0.88493,-0.44338,252.38
> view matrix models
> #2,-0.64198,-0.72257,0.25643,525.35,-0.67471,0.69126,0.25869,825.84,-0.36418,-0.0069437,-0.9313,423.78,#25,-0.71853,0.10846,0.68699,310.8,0.49044,0.77938,0.38992,251.48,-0.49313,0.61709,-0.6132,256.13
> view matrix models
> #2,0.21443,-0.97334,0.081469,-48.597,-0.82246,-0.22492,-0.52246,663.47,0.52685,0.045026,-0.84876,-88.129,#25,-0.73946,-0.64795,0.18267,307.69,-0.6587,0.7524,0.0024061,260.21,-0.139,-0.11854,-0.98317,250.22
> view matrix models
> #2,0.49752,-0.29449,0.81594,-24.431,0.4095,-0.74947,-0.5202,-189.95,0.76471,0.59293,-0.25228,-74.02,#25,0.22837,-0.82411,0.51835,299.47,-0.7279,-0.4981,-0.47123,255.35,0.64654,-0.26969,-0.71362,243.51
> view matrix models
> #2,-0.72411,0.024751,0.68924,769.04,0.6778,0.21025,0.70454,-69.652,-0.12747,0.97733,-0.16902,548.74,#25,0.073867,0.36724,0.92719,305.81,0.67439,-0.70331,0.22484,243.67,0.73467,0.60868,-0.29962,246.63
> view matrix models
> #2,-0.66528,-0.69084,-0.2831,523.48,0.72454,-0.68889,-0.021574,-340.83,-0.18012,-0.21947,0.95885,345.73,#25,-0.91524,0.32833,0.23354,313.24,-0.37766,-0.90104,-0.2133,250.93,0.1404,-0.28342,0.94866,247.47
> view matrix models
> #2,-0.11118,-0.68342,-0.72151,178.24,0.94824,0.14436,-0.28285,-287.77,0.29746,-0.71561,0.63199,-68.313,#25,-0.91328,0.0286,-0.40633,311.9,0.30463,-0.61426,-0.72793,246.85,-0.27041,-0.78858,0.55228,248.45
> view matrix models
> #2,-0.17814,-0.36786,-0.91266,284.21,0.77395,0.52039,-0.36082,-99.1,0.60767,-0.77063,0.192,-283.92,#25,-0.73895,0.29345,-0.6065,311.68,0.54328,-0.27288,-0.79397,246.47,-0.39849,-0.9162,0.042219,248.86
> view matrix models
> #2,0.17017,-0.065608,-0.98323,146.25,0.97304,0.1688,0.15715,-277.8,0.15566,-0.98346,0.092565,-70.738,#25,-0.39892,0.16998,-0.90109,308.5,0.51021,-0.77537,-0.37213,244.6,-0.76194,-0.6082,0.22259,253
> ui mousemode right "translate selected models"
> view matrix models
> #2,0.17017,-0.065608,-0.98323,135.62,0.97304,0.1688,0.15715,-268.7,0.15566,-0.98346,0.092565,-58.823,#25,-0.39892,0.16998,-0.90109,297.86,0.51021,-0.77537,-0.37213,253.69,-0.76194,-0.6082,0.22259,264.92
> fitmap sel inMap #1
Fit molecules 8h93 (#2), AF-P68373-F1-model_v4.pdb (#25) to map
cryosparc_P105_J104_004_volume_map_deepEM_tight.mrc (#1) using 6406 atoms
average map value = 0.1611, steps = 2000
shifted from previous position = 86.5
rotated from previous position = 16.4 degrees
atoms outside contour = 4181, contour level = 0.030497
Position of 8h93 (#2) relative to
cryosparc_P105_J104_004_volume_map_deepEM_tight.mrc (#1) coordinates:
Matrix rotation and translation
0.40846653 -0.15213835 -0.90000500 -7.88554045
0.88830939 0.29300806 0.35362791 -172.89592701
0.20990836 -0.94392806 0.25482991 -81.83308368
Axis -0.64893288 -0.55508918 0.52034808
Axis point 0.00000000 -167.71501032 61.77544700
Rotation angle (degrees) 91.25188343
Shift along axis 58.50815679
Position of AF-P68373-F1-model_v4.pdb (#25) relative to
cryosparc_P105_J104_004_volume_map_deepEM_tight.mrc (#1) coordinates:
Matrix rotation and translation
-0.36616872 -0.09367547 -0.92582146 310.96641409
0.66992383 -0.71706479 -0.19240618 260.58047602
-0.64585023 -0.69068299 0.32532212 256.48745701
Axis -0.52240849 -0.29353031 0.80058062
Axis point 199.42371038 223.82166339 0.00000000
Rotation angle (degrees) 151.51664490
Shift along axis -33.60087451
> fitmap sel inMap #1
Fit molecules 8h93 (#2), AF-P68373-F1-model_v4.pdb (#25) to map
cryosparc_P105_J104_004_volume_map_deepEM_tight.mrc (#1) using 6406 atoms
average map value = 0.161, steps = 2000
shifted from previous position = 4.75
rotated from previous position = 0.884 degrees
atoms outside contour = 4158, contour level = 0.030497
Position of 8h93 (#2) relative to
cryosparc_P105_J104_004_volume_map_deepEM_tight.mrc (#1) coordinates:
Matrix rotation and translation
0.40543119 -0.16672816 -0.89879211 -9.70080360
0.89174892 0.28835328 0.34876387 -176.48863996
0.20102089 -0.94289665 0.26558707 -76.18343902
Axis -0.64596356 -0.55002000 0.52934778
Axis point 0.00000000 -167.19580125 65.50828346
Rotation angle (degrees) 91.16399964
Shift along axis 63.01111372
Position of AF-P68373-F1-model_v4.pdb (#25) relative to
cryosparc_P105_J104_004_volume_map_deepEM_tight.mrc (#1) coordinates:
Matrix rotation and translation
-0.37919325 -0.09825903 -0.92008567 310.82783453
0.66502448 -0.72032960 -0.19714893 260.35638798
-0.64339327 -0.68663704 0.33848879 256.16722344
Axis -0.51632187 -0.29186068 0.80512674
Axis point 198.17832949 222.82212096 0.00000000
Rotation angle (degrees) 151.70479577
Shift along axis -30.22791745
> view matrix models
> #2,0.40543,-0.16673,-0.89879,-16.254,0.89175,0.28835,0.34876,-184.97,0.20102,-0.9429,0.26559,-63.697,#25,-0.37919,-0.098259,-0.92009,304.27,0.66502,-0.72033,-0.19715,251.88,-0.64339,-0.68664,0.33849,268.65
> ui mousemode right "rotate selected models"
> view matrix models
> #2,-0.50351,-0.45346,-0.73542,461.39,-0.65122,0.75858,-0.02188,824,0.56779,0.4679,-0.67726,11.739,#25,-0.84234,0.46009,-0.28069,310.29,0.44297,0.88768,0.12568,260.52,0.30699,-0.018467,-0.95153,264.1
> view matrix models
> #2,-0.88085,-0.46948,-0.060731,710.06,-0.29423,0.44246,0.84714,575.24,-0.37085,0.76408,-0.52788,644.01,#25,-0.70196,0.52933,0.47651,309.55,0.63049,0.15065,0.76144,255.95,0.33127,0.83493,-0.43949,267.61
> view matrix models
> #2,-0.31046,-0.8841,-0.34925,261.94,-0.93827,0.22604,0.26185,880.44,-0.15256,0.40898,-0.8997,414.92,#25,-0.99836,-0.028012,0.04987,309.42,0.0091643,0.78227,0.62287,263.45,-0.05646,0.62231,-0.78073,269.67
> view matrix models
> #2,-0.72039,-0.69133,-0.055599,562.85,-0.68234,0.72082,-0.12181,829.23,0.12428,-0.04981,-0.991,138.7,#25,-0.84132,0.29476,0.4531,309.62,0.36063,0.93049,0.064306,261.34,-0.40265,0.2175,-0.88914,270.6
> view matrix models
> #2,-0.25223,-0.88067,-0.40099,226.04,-0.94513,0.1353,0.29736,864.6,-0.20763,0.45399,-0.86648,459.59,#25,-0.99815,-0.056337,-0.02277,309.29,-0.056874,0.73425,0.67649,263.76,-0.021393,0.67654,-0.7361,269.64
> view matrix models
> #2,-0.6495,-0.75418,-0.096775,504.26,-0.75484,0.65485,-0.037284,860.22,0.091492,0.048833,-0.99461,181.26,#25,-0.89004,0.22216,0.39808,309.68,0.31529,0.93068,0.18553,261.7,-0.32927,0.29064,-0.89839,270.35
> view matrix models
> #2,-0.92196,-0.22146,0.31772,809.21,0.083533,0.68736,0.7215,403.93,-0.37817,0.69173,-0.61522,627.52,#25,-0.34891,0.5455,0.76204,306.91,0.9081,-0.0041246,0.41874,253.11,0.23156,0.8381,-0.49393,268.39
> view matrix models
> #2,-0.86655,-0.15469,0.47452,798.89,0.1575,0.81742,0.5541,383.65,-0.47359,0.55489,-0.68397,648.77,#25,-0.21118,0.47637,0.85351,305.56,0.97581,0.052323,0.21224,252.82,0.056447,0.87769,-0.4759,269.91
> ui mousemode right "translate selected models"
> view matrix models
> #2,-0.86655,-0.15469,0.47452,807.36,0.1575,0.81742,0.5541,387.58,-0.47359,0.55489,-0.68397,640.2,#25,-0.21118,0.47637,0.85351,314.02,0.97581,0.052323,0.21224,256.75,0.056447,0.87769,-0.4759,261.34
> fitmap sel inMap #1
Fit molecules 8h93 (#2), AF-P68373-F1-model_v4.pdb (#25) to map
cryosparc_P105_J104_004_volume_map_deepEM_tight.mrc (#1) using 6406 atoms
average map value = 0.1783, steps = 2000
shifted from previous position = 102
rotated from previous position = 19.4 degrees
atoms outside contour = 3704, contour level = 0.030497
Position of 8h93 (#2) relative to
cryosparc_P105_J104_004_volume_map_deepEM_tight.mrc (#1) coordinates:
Matrix rotation and translation
-0.83161999 0.16063853 0.53160459 859.26924671
0.45017723 0.75553071 0.47593465 194.12473878
-0.32519015 0.63511306 -0.70063026 573.53852436
Axis 0.17334105 0.93302670 0.31529995
Axis point 465.34415069 0.00000000 153.54559079
Rotation angle (degrees) 152.66785487
Shift along axis 510.90686897
Position of AF-P68373-F1-model_v4.pdb (#25) relative to
cryosparc_P105_J104_004_volume_map_deepEM_tight.mrc (#1) coordinates:
Matrix rotation and translation
0.09427994 0.57182934 0.81493711 307.75367869
0.98179821 -0.18897269 0.01901527 253.51362926
0.16487435 0.79831104 -0.57923737 263.16344934
Axis 0.71200252 0.59392895 0.37456750
Axis point 0.00000000 -19.96379430 45.48400959
Rotation angle (degrees) 146.82101143
Shift along axis 468.26295414
> ui mousemode right translate
> volume #1 color #bebebe45
> volume #1 level 0.2432
> fitmap sel inMap #1
Fit molecules 8h93 (#2), AF-P68373-F1-model_v4.pdb (#25) to map
cryosparc_P105_J104_004_volume_map_deepEM_tight.mrc (#1) using 6406 atoms
average map value = 0.1832, steps = 2000
shifted from previous position = 64.1
rotated from previous position = 11.6 degrees
atoms outside contour = 5384, contour level = 0.24321
Position of 8h93 (#2) relative to
cryosparc_P105_J104_004_volume_map_deepEM_tight.mrc (#1) coordinates:
Matrix rotation and translation
-0.86254530 0.28244181 0.41981213 901.21029980
0.44747259 0.81310106 0.37233713 204.62051088
-0.23618611 0.50901206 -0.82772147 484.28638066
Axis 0.19804865 0.95057347 0.23913765
Axis point 463.68618889 0.00000000 141.09333441
Rotation angle (degrees) 159.81491141
Shift along axis 488.80141754
Position of AF-P68373-F1-model_v4.pdb (#25) relative to
cryosparc_P105_J104_004_volume_map_deepEM_tight.mrc (#1) coordinates:
Matrix rotation and translation
0.14471788 0.69134830 0.70788011 307.53283227
0.98893135 -0.12472704 -0.08036138 253.47516432
0.03273408 0.71167457 -0.70174624 262.49946341
Axis 0.73170649 0.62372009 0.27491611
Axis point 0.00000000 -31.92650409 67.34996258
Rotation angle (degrees) 147.23291894
Shift along axis 455.28665213
> volume #1 level 0.1
> fitmap sel inMap #1
Fit molecules 8h93 (#2), AF-P68373-F1-model_v4.pdb (#25) to map
cryosparc_P105_J104_004_volume_map_deepEM_tight.mrc (#1) using 6406 atoms
average map value = 0.1939, steps = 2000
shifted from previous position = 62.5
rotated from previous position = 11.2 degrees
atoms outside contour = 4346, contour level = 0.1
Position of 8h93 (#2) relative to
cryosparc_P105_J104_004_volume_map_deepEM_tight.mrc (#1) coordinates:
Matrix rotation and translation
-0.75287749 0.38597360 0.53310398 866.79949185
0.60378811 0.72741751 0.32604244 88.84173006
-0.26194540 0.56735186 -0.78070254 516.33038684
Axis 0.28093882 0.92561753 0.25358542
Axis point 468.74206336 0.00000000 155.97041585
Rotation angle (degrees) 154.56608885
Shift along axis 456.68494399
Position of AF-P68373-F1-model_v4.pdb (#25) relative to
cryosparc_P105_J104_004_volume_map_deepEM_tight.mrc (#1) coordinates:
Matrix rotation and translation
0.31344690 0.60950109 0.72818916 307.10943627
0.94495045 -0.27603603 -0.17570644 252.18102258
0.09391318 0.74317731 -0.66247097 263.15758719
Axis 0.78817407 0.54405128 0.28773224
Axis point 0.00000000 -6.88429254 76.47089390
Rotation angle (degrees) 144.34386631
Shift along axis 454.97402417
> save /Users/z.kilic/Desktop/Chimeraimages/tuba1c_1.pdb models #25
> hide #25 models
> open /Users/z.kilic/Desktop/Chimeraimages/tuba1c_1.pdb
tuba1c_1.pdb title:
Alphafold monomer V2.0 prediction for tubulin α-1C chain (P68373) [more
info...]
Chain information for tuba1c_1.pdb #26
---
Chain | Description | UniProt
A | tubulin α-1C chain | TBA1C_MOUSE 1-449
> view orient
> turn z 10
> turn y 180
> volume #1 color #bebebe
> lighting soft
> turn y 180
> turn x 180
> turn x 90
> turn x -90
> clip front
Missing "front" keyword's argument
> clip front 10
> clip front -10
> turn x 90
> turn x -90
> clip off
> select #2
22191 atoms, 22621 bonds, 4 pseudobonds, 2810 residues, 2 models selected
> volume zone #1 nearAtoms sel
> volume zone #1 nearAtoms sel range 4 newMap true
Opened cryosparc_P105_J104_004_volume_map_deepEM_tight.mrc zone as #27, grid
size 300,300,300, pixel 2.12, shown at step 1, values float32
> select add #27
22191 atoms, 22621 bonds, 4 pseudobonds, 2810 residues, 4 models selected
> view sel
No displayed objects specified.
> clip off
> hide #26 models
> show #!1 models
> volume unzone #1
> volume zone #2 range 4 newMap true
Missing required "near_atoms" argument
> volume zone #2 nearAtoms sel range 4 newMap true
> volume zone #1 nearAtoms sel range 4 newMap true
Opened cryosparc_P105_J104_004_volume_map_deepEM_tight.mrc zone as #28, grid
size 300,300,300, pixel 2.12, shown at step 1, values float32
> hide #!27 models
> select subtract #27
22191 atoms, 22621 bonds, 4 pseudobonds, 2810 residues, 2 models selected
> view sel
No displayed objects specified.
> select add #28
22191 atoms, 22621 bonds, 4 pseudobonds, 2810 residues, 4 models selected
> view sel
No displayed objects specified.
> select subtract #2
2 models selected
> show #!2 models
> show #!1 models
> volume #1 color #bebebe
> lighting simple
> volume #1 color #bebebebc
> select add #2
22191 atoms, 22621 bonds, 4 pseudobonds, 2810 residues, 4 models selected
> ui mousemode right "translate selected models"
> view matrix models
> #2,-0.75288,0.38597,0.5331,289.77,0.60379,0.72742,0.32604,-81.732,-0.26195,0.56735,-0.7807,492.83,#28,1,0,0,-577.03,0,1,0,-170.57,0,0,1,-23.501
> view matrix models
> #2,-0.75288,0.38597,0.5331,244.24,0.60379,0.72742,0.32604,-76.908,-0.26195,0.56735,-0.7807,489.85,#28,1,0,0,-622.56,0,1,0,-165.75,0,0,1,-26.482
> view matrix models
> #2,-0.75288,0.38597,0.5331,231.94,0.60379,0.72742,0.32604,-85.471,-0.26195,0.56735,-0.7807,489.65,#28,1,0,0,-634.86,0,1,0,-174.31,0,0,1,-26.679
> view matrix models
> #2,-0.75288,0.38597,0.5331,243.72,0.60379,0.72742,0.32604,-107.74,-0.26195,0.56735,-0.7807,479.89,#28,1,0,0,-623.08,0,1,0,-196.58,0,0,1,-36.436
> ui mousemode right "rotate selected models"
> view matrix models
> #2,0.33668,0.30294,0.89156,-62.524,0.91877,-0.31302,-0.2406,190.99,0.20619,0.90014,-0.38372,207.93,#28,0.33874,0.71433,-0.61236,-103.43,-0.9408,0.2486,-0.23043,1103.4,-0.012368,0.65416,0.75625,-229.94
> view matrix models
> #2,0.79161,0.46782,0.39306,-77.705,0.58627,-0.40025,-0.70433,395.12,-0.17218,0.788,-0.59111,365.56,#28,-0.20587,0.94642,-0.2488,145.13,-0.97136,-0.16681,0.16922,1164.5,0.11865,0.27652,0.95366,-254.26
> view matrix models
> #2,0.9435,0.27508,0.18476,-17.78,0.29577,-0.44765,-0.84388,502.81,-0.14943,0.85085,-0.50371,325.53,#28,-0.50567,0.83002,-0.23532,468.29,-0.84533,-0.42218,0.32737,1104,0.17237,0.36447,0.91512,-328.77
> view matrix models
> #2,0.69332,-0.71248,0.10809,274.04,-0.50872,-0.59014,-0.62685,657.47,0.5104,0.37961,-0.77161,350.64,#28,-0.73936,-0.064409,-0.67023,1266.7,-0.17895,-0.94082,0.28782,747.56,-0.6491,0.33274,0.68407,530.51
> view matrix models
> #2,0.67142,-0.47311,0.57041,113.94,-0.28667,-0.87559,-0.3888,614.58,0.68339,0.097527,-0.72351,363.69,#28,-0.38402,0.24723,-0.88961,884.17,-0.3294,-0.93677,-0.11814,1044.3,-0.86257,0.24767,0.44117,861.57
> ui mousemode right "translate selected models"
> view matrix models
> #2,0.67142,-0.47311,0.57041,59.389,-0.28667,-0.87559,-0.3888,562.64,0.68339,0.097527,-0.72351,342.29,#28,-0.38402,0.24723,-0.88961,829.62,-0.3294,-0.93677,-0.11814,992.39,-0.86257,0.24767,0.44117,840.18
> fitmap sel inMap #1
Fit molecule 8h93 (#2) to map
cryosparc_P105_J104_004_volume_map_deepEM_tight.mrc (#1) using 22191 atoms
average map value = 0.1569, steps = 124
shifted from previous position = 21.5
rotated from previous position = 16.2 degrees
atoms outside contour = 12158, contour level = 0.1
Position of 8h93 (#2) relative to
cryosparc_P105_J104_004_volume_map_deepEM_tight.mrc (#1) coordinates:
Matrix rotation and translation
0.84971444 -0.31089803 0.42582598 15.37291968
-0.18259588 -0.93118987 -0.31550621 545.81479199
0.49461510 0.19033611 -0.84801419 375.38692904
Axis 0.96099369 -0.13068481 0.24374702
Axis point 0.00000000 248.38331779 224.10325047
Rotation angle (degrees) 164.74074120
Shift along axis 34.94302001
> ui mousemode right "translate selected models"
> ui mousemode right translate
> select clear
> volume zone #1 nearAtoms #2 range 4 newMap true
Opened cryosparc_P105_J104_004_volume_map_deepEM_tight.mrc zone as #29, grid
size 300,300,300, pixel 2.12, shown at step 1, values float32
> color #29 #b2b2ff75 models
> color #29 #e5e9fa75 models
> color #29 #e5e9fa2f models
> color #29 #e1e5f62f models
> color #29 #e1e5f62e models
> color #29 white
> transparency #29 0
> color zone #29 near #2 distance 4
> transparency #29 60
> transparency #29 0
> color zone #29 near #2 distance 4
> transparency #29 60
> transparency #29 \0 ; color zone #29 near #2 distance 4
Missing or invalid "percent" argument: Expected a number
> transparency #29 0
> color zone #29 near #2 distance 4
> transparency #29 60
> color zone #29 near #2 distance 4
> transparency #29 60
> color zone #29 near #2 distance 4
> hide #!29 models
> hide #!28 models
> show #!1 models
> show #!3 models
> show #4 models
> show #5 models
> show #6 models
> show #4-6,8-13,15,17-19,21-23,25-26#!2-3,7,14,16,20,24 target m
> color #29 #e1e5f61f models
> color #29 #e1e5f6ff models
> color #29 #e1e5f616 models
> select add #1
2 models selected
> select subtract #1
Nothing selected
> color #1 #bebebe54 models
> hide #4-6,8-13,15,17-19,21-23,25-26#!2-3,7,14,16,20,24 target m
> color #1 #00000054 models
> color #1 #bebebe54 models
> color #1 #bebebeff models
> lighting soft
> transparency #29 60
> color zone #29 near #2 distance 4
> view front
> lighting full
> lighting soft
> lighting simple
> lighting soft
> lighting shadows true intensity 0.5
> graphics silhouettes false
> lighting shadows false
> lighting flat
> lighting full
> lighting soft
> set bgColor white
> set bgColor gray
> set bgColor #80808000
> set bgColor black
> set bgColor transparent
> set bgColor white
> set bgColor #ffffff00
> close #1
> close #7
> close #16
> open /Users/z.kilic/Downloads/MmCPLs_playground.cxs
Opened cryosparc_P105_J104_004_volume_map_deepEM_tight.mrc as #1, grid size
300,300,300, pixel 2.12, shown at level 0.0305, step 1, values float32
Opened MmCPLs_UNK4.mrc as #7, grid size 32,32,38, pixel 2.12,2.12,2.12, shown
at level 0.159, step 1, values float32
Opened MmCPLs_UNK1.mrc as #16, grid size 32,32,32, pixel 2.12, shown at level
0.193, step 1, values float32
Opened MmCPLs_UNK2.mrc as #20, grid size 34,34,34, pixel 2.12, shown at level
0.226, step 1, values float32
opened ChimeraX session
> select add #1
2 models selected
> select subtract #1
Nothing selected
> select add #1
2 models selected
> select subtract #1
Nothing selected
> select add #1
2 models selected
> select subtract #1
Nothing selected
> color #2 #EF767A
> help help:devel
> close session
> open /Users/z.kilic/Downloads/MmCPLs_playground.cxs format session
Opened cryosparc_P105_J104_004_volume_map_deepEM_tight.mrc as #1, grid size
300,300,300, pixel 2.12, shown at level 0.0305, step 1, values float32
Opened MmCPLs_UNK4.mrc as #7, grid size 32,32,38, pixel 2.12,2.12,2.12, shown
at level 0.159, step 1, values float32
Opened MmCPLs_UNK1.mrc as #16, grid size 32,32,32, pixel 2.12, shown at level
0.193, step 1, values float32
Opened MmCPLs_UNK2.mrc as #20, grid size 34,34,34, pixel 2.12, shown at level
0.226, step 1, values float32
opened ChimeraX session
> ui tool show Log
> ui tool show "File History"
> open /Users/z.kilic/Downloads/AF-P68373-F1-model_v4.pdb
AF-P68373-F1-model_v4.pdb title:
Alphafold monomer V2.0 prediction for tubulin α-1C chain (P68373) [more
info...]
Chain information for AF-P68373-F1-model_v4.pdb #24
---
Chain | Description | UniProt
A | tubulin α-1C chain | TBA1C_MOUSE 1-449
Computing secondary structure
> open /Users/z.kilic/Downloads/AF-P68373-F1-model_v4.pdb
AF-P68373-F1-model_v4.pdb title:
Alphafold monomer V2.0 prediction for tubulin α-1C chain (P68373) [more
info...]
Chain information for AF-P68373-F1-model_v4.pdb #25
---
Chain | Description | UniProt
A | tubulin α-1C chain | TBA1C_MOUSE 1-449
Computing secondary structure
> open /Users/z.kilic/Downloads/MmCPLs_playground.cxs
Opened cryosparc_P105_J104_004_volume_map_deepEM_tight.mrc as #1, grid size
300,300,300, pixel 2.12, shown at level 0.0305, step 1, values float32
Opened MmCPLs_UNK4.mrc as #7, grid size 32,32,38, pixel 2.12,2.12,2.12, shown
at level 0.159, step 1, values float32
Opened MmCPLs_UNK1.mrc as #16, grid size 32,32,32, pixel 2.12, shown at level
0.193, step 1, values float32
Opened MmCPLs_UNK2.mrc as #20, grid size 34,34,34, pixel 2.12, shown at level
0.226, step 1, values float32
opened ChimeraX session
> open /Users/z.kilic/Downloads/MmCPLs_playground.cxs format session
Opened cryosparc_P105_J104_004_volume_map_deepEM_tight.mrc as #1, grid size
300,300,300, pixel 2.12, shown at level 0.0305, step 1, values float32
Opened MmCPLs_UNK4.mrc as #7, grid size 32,32,38, pixel 2.12,2.12,2.12, shown
at level 0.159, step 1, values float32
Opened MmCPLs_UNK1.mrc as #16, grid size 32,32,32, pixel 2.12, shown at level
0.193, step 1, values float32
Opened MmCPLs_UNK2.mrc as #20, grid size 34,34,34, pixel 2.12, shown at level
0.226, step 1, values float32
opened ChimeraX session
> open /Users/z.kilic/Downloads/MmCPLs_fit-SCMC-TUBB_250602.cxs format session
Opened cryosparc_P105_J104_004_volume_map_deepEM_tight.mrc as #1, grid size
300,300,300, pixel 2.12, shown at level 0.157, step 1, values float32
opened ChimeraX session
> open /Users/z.kilic/Downloads/cryosparc_P105_J41_005_volume_map_sharp.mrc
> format mrc
Opened cryosparc_P105_J41_005_volume_map_sharp.mrc as #6, grid size
400,400,400, pixel 2.12, shown at level 0.211, step 2, values float32
> open /Users/z.kilic/Desktop/Chimeraimages/listed.cxs format session
Opened cryosparc_P105_J104_004_volume_map_deepEM_tight.mrc as #1, grid size
300,300,300, pixel 2.12, shown at level 0.0305, step 1, values float32
Opened MmCPLs_UNK4.mrc as #7, grid size 32,32,38, pixel 2.12,2.12,2.12, shown
at level 0.159, step 1, values float32
Opened MmCPLs_UNK1.mrc as #16, grid size 32,32,32, pixel 2.12, shown at level
0.193, step 1, values float32
Opened MmCPLs_UNK2.mrc as #20, grid size 34,34,34, pixel 2.12, shown at level
0.226, step 1, values float32
opened ChimeraX session
> open /Users/z.kilic/Desktop/Chimeraimages/TLE6_1.pdb format pdb
Summary of feedback from opening
/Users/z.kilic/Desktop/Chimeraimages/TLE6_1.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 ASP A 97 PHE A 109 1 13
Start residue of secondary structure not found: HELIX 2 2 SER A 119 PHE A 129
1 11
Start residue of secondary structure not found: HELIX 3 3 GLY A 150 GLY A 165
1 16
Start residue of secondary structure not found: HELIX 4 4 ARG A 180 ILE A 182
1 3
Start residue of secondary structure not found: HELIX 5 5 SER A 189 CYS A 198
1 10
170 messages similar to the above omitted
Chain information for TLE6_1.pdb #24
---
Chain | Description
B | No description available
> open /Users/z.kilic/Desktop/Chimeraimages/tuba1c_1.pdb format pdb
tuba1c_1.pdb title:
Alphafold monomer V2.0 prediction for tubulin α-1C chain (P68373) [more
info...]
Chain information for tuba1c_1.pdb #25
---
Chain | Description | UniProt
A | tubulin α-1C chain | TBA1C_MOUSE 1-449
> open /Users/z.kilic/Downloads/MmCPLs_playground.cxs format session
Opened cryosparc_P105_J104_004_volume_map_deepEM_tight.mrc as #1, grid size
300,300,300, pixel 2.12, shown at level 0.0305, step 1, values float32
Opened MmCPLs_UNK4.mrc as #7, grid size 32,32,38, pixel 2.12,2.12,2.12, shown
at level 0.159, step 1, values float32
Opened MmCPLs_UNK1.mrc as #16, grid size 32,32,32, pixel 2.12, shown at level
0.193, step 1, values float32
Opened MmCPLs_UNK2.mrc as #20, grid size 34,34,34, pixel 2.12, shown at level
0.226, step 1, values float32
opened ChimeraX session
> open /Users/z.kilic/Downloads/MmCPLs_fit-SCMC-PADI6_250529.cxs format
> session
Opened cryosparc_P105_J56_006_volume_map_sharp.mrc as #1, grid size
400,400,400, pixel 2.12, shown at level 0.289, step 1, values float32
Opened cryosparc_P105_J67_007_volume_map_sharp.mrc as #4, grid size
300,300,300, pixel 2.12, shown at level 0.276, step 1, values float32
opened ChimeraX session
> open /Users/z.kilic/Downloads/MmCPLs_playground.cxs format session
Opened cryosparc_P105_J104_004_volume_map_deepEM_tight.mrc as #1, grid size
300,300,300, pixel 2.12, shown at level 0.0305, step 1, values float32
Opened MmCPLs_UNK4.mrc as #7, grid size 32,32,38, pixel 2.12,2.12,2.12, shown
at level 0.159, step 1, values float32
Opened MmCPLs_UNK1.mrc as #16, grid size 32,32,32, pixel 2.12, shown at level
0.193, step 1, values float32
Opened MmCPLs_UNK2.mrc as #20, grid size 34,34,34, pixel 2.12, shown at level
0.226, step 1, values float32
opened ChimeraX session
> view front
Expected an objects specifier or a view name or a keyword
> view name front
> view front
> view name front
> view front
> hide #4-6,8-13,15,17-19,21-23#!3,7,14,16,20 target m
> open /Users/z.kilic/Downloads/MmCPLs_playground.cxs
Opened cryosparc_P105_J104_004_volume_map_deepEM_tight.mrc as #1, grid size
300,300,300, pixel 2.12, shown at level 0.0305, step 1, values float32
Opened MmCPLs_UNK4.mrc as #7, grid size 32,32,38, pixel 2.12,2.12,2.12, shown
at level 0.159, step 1, values float32
Opened MmCPLs_UNK1.mrc as #16, grid size 32,32,32, pixel 2.12, shown at level
0.193, step 1, values float32
Opened MmCPLs_UNK2.mrc as #20, grid size 34,34,34, pixel 2.12, shown at level
0.226, step 1, values float32
opened ChimeraX session
> view name front
> select add #1
4 models selected
> getcrd sel
No atoms specified
> select add #2
22191 atoms, 22621 bonds, 4 pseudobonds, 2810 residues, 6 models selected
> getcrd sel
Atom #2/A:97@N 461.906 406.838 408.908
Atom #2/A:97@CA 461.413 405.496 409.192
Atom #2/A:97@C 460.818 404.866 407.935
Atom #2/A:97@O 460.237 403.782 407.984
Atom #2/A:97@CB 460.374 405.532 410.314
Atom #2/A:97@CG 460.161 404.176 410.958
Atom #2/A:97@OD1 461.128 403.628 411.526
Atom #2/A:97@OD2 459.027 403.657 410.892
Atom #2/A:98@N 460.969 405.562 406.806
Atom #2/A:98@CA 460.481 405.031 405.536
Atom #2/A:98@C 461.226 403.757 405.157
Atom #2/A:98@O 460.630 402.816 404.616
Atom #2/A:98@CB 460.621 406.088 404.440
Atom #2/A:98@CG 459.933 405.838 403.097
Atom #2/A:98@CD1 459.396 407.145 402.537
Atom #2/A:98@CD2 460.881 405.183 402.102
Atom #2/A:99@N 462.533 403.713 405.426
Atom #2/A:99@CA 463.307 402.510 405.139
Atom #2/A:99@C 462.816 401.330 405.970
Atom #2/A:99@O 462.777 400.197 405.484
Atom #2/A:99@CB 464.799 402.771 405.372
Atom #2/A:99@CG 465.258 402.807 406.831
Atom #2/A:99@CD 464.656 403.951 407.632
Atom #2/A:99@OE1 463.964 404.815 407.093
Atom #2/A:99@NE2 464.919 403.958 408.934
Atom #2/A:100@N 462.418 401.578 407.221
Atom #2/A:100@CA 461.841 400.511 408.033
Atom #2/A:100@C 460.494 400.066 407.475
Atom #2/A:100@O 460.159 398.873 407.509
Atom #2/A:100@CB 461.699 400.973 409.483
Atom #2/A:100@CG 463.002 400.881 410.252
Atom #2/A:100@OD1 463.780 399.941 409.990
Atom #2/A:100@OD2 463.246 401.747 411.117
Atom #2/A:101@N 459.704 401.015 406.965
Atom #2/A:101@CA 458.446 400.663 406.318
Atom #2/A:101@C 458.687 399.731 405.139
Atom #2/A:101@O 458.035 398.688 405.012
Atom #2/A:101@CB 457.713 401.925 405.864
Atom #2/A:101@CG 456.397 401.644 405.173
Atom #2/A:101@CD1 455.267 401.306 405.904
Atom #2/A:101@CD2 456.290 401.705 403.790
Atom #2/A:101@CE1 454.064 401.045 405.279
Atom #2/A:101@CE2 455.090 401.442 403.155
Atom #2/A:101@CZ 453.981 401.114 403.905
Atom #2/A:101@OH 452.783 400.855 403.278
Atom #2/A:102@N 459.640 400.087 404.274
Atom #2/A:102@CA 459.958 399.233 403.135
Atom #2/A:102@C 460.524 397.892 403.582
Atom #2/A:102@O 460.245 396.863 402.960
Atom #2/A:102@CB 460.937 399.943 402.201
Atom #2/A:102@CG 460.496 401.339 401.787
Atom #2/A:102@CD 460.986 401.698 400.392
Atom #2/A:102@CE 462.421 401.248 400.167
Atom #2/A:102@NZ 462.853 401.461 398.758
Atom #2/A:103@N 461.309 397.880 404.662
Atom #2/A:103@CA 461.879 396.632 405.157
Atom #2/A:103@C 460.791 395.674 405.625
Atom #2/A:103@O 460.802 394.488 405.276
Atom #2/A:103@CB 462.868 396.920 406.287
Atom #2/A:104@N 459.829 396.166 406.409
Atom #2/A:104@CA 458.774 395.264 406.859
Atom #2/A:104@C 457.783 394.936 405.750
Atom #2/A:104@O 457.166 393.865 405.789
Atom #2/A:104@CB 458.047 395.826 408.088
Atom #2/A:104@CG 457.043 396.894 407.784
Atom #2/A:104@ND1 455.827 396.631 407.190
Atom #2/A:104@CD2 457.054 398.222 408.043
Atom #2/A:104@CE1 455.147 397.757 407.065
Atom #2/A:104@NE2 455.870 398.737 407.576
Atom #2/A:105@N 457.628 395.817 404.756
Atom #2/A:105@CA 456.850 395.468 403.570
Atom #2/A:105@C 457.515 394.317 402.826
Atom #2/A:105@O 456.845 393.397 402.342
Atom #2/A:105@CB 456.665 396.705 402.670
Atom #2/A:105@CG1 456.311 396.292 401.249
Atom #2/A:105@CG2 455.589 397.618 403.241
Atom #2/A:106@N 458.844 394.353 402.723
Atom #2/A:106@CA 459.582 393.233 402.150
Atom #2/A:106@C 459.370 391.977 402.985
Atom #2/A:106@O 459.145 390.885 402.450
Atom #2/A:106@CB 461.076 393.589 402.036
Atom #2/A:106@CG1 461.326 394.477 400.816
Atom #2/A:106@CG2 461.929 392.331 401.981
Atom #2/A:106@CD1 462.510 395.402 400.979
Atom #2/A:107@N 459.436 392.120 404.311
Atom #2/A:107@CA 459.332 390.962 405.194
Atom #2/A:107@C 457.973 390.281 405.073
Atom #2/A:107@O 457.894 389.048 405.015
Atom #2/A:107@CB 459.593 391.382 406.639
Atom #2/A:108@N 456.889 391.062 405.039
Atom #2/A:108@CA 455.561 390.456 404.971
Atom #2/A:108@C 455.335 389.761 403.633
Atom #2/A:108@O 454.727 388.685 403.582
Atom #2/A:108@CB 454.478 391.506 405.227
Atom #2/A:108@CG 454.573 392.745 404.360
Atom #2/A:108@CD 453.668 393.851 404.873
Atom #2/A:108@CE 452.276 393.745 404.274
Atom #2/A:108@NZ 451.554 395.045 404.330
Atom #2/A:109@N 455.813 390.357 402.541
Atom #2/A:109@CA 455.657 389.768 401.210
Atom #2/A:109@C 456.829 388.825 400.928
Atom #2/A:109@O 457.772 389.134 400.199
Atom #2/A:109@CB 455.545 390.859 400.153
Atom #2/A:109@CG 454.337 391.735 400.316
Atom #2/A:109@CD1 453.073 391.181 400.427
Atom #2/A:109@CD2 454.463 393.114 400.349
Atom #2/A:109@CE1 451.960 391.983 400.577
Atom #2/A:109@CE2 453.354 393.922 400.497
Atom #2/A:109@CZ 452.100 393.356 400.611
Atom #2/A:110@N 456.745 387.640 401.536
Atom #2/A:110@CA 457.758 386.603 401.379
Atom #2/A:110@C 457.172 385.314 400.816
Atom #2/A:110@O 457.692 384.228 401.090
Atom #2/A:110@CB 458.453 386.332 402.715
Atom #2/A:110@CG 457.472 386.063 403.839
Atom #2/A:110@OD1 456.251 386.192 403.609
Atom #2/A:110@OD2 457.921 385.721 404.952
Atom #2/A:111@N 456.091 385.412 400.038
Atom #2/A:111@CA 455.443 384.217 399.506
Atom #2/A:111@C 456.363 383.466 398.550
Atom #2/A:111@O 456.453 382.235 398.596
Atom #2/A:111@CB 454.137 384.597 398.806
Atom #2/A:111@OG1 454.419 385.462 397.700
Atom #2/A:111@CG2 453.204 385.309 399.774
Atom #2/A:112@N 457.055 384.194 397.675
Atom #2/A:112@CA 457.937 383.569 396.692
Atom #2/A:112@C 459.021 384.569 396.318
Atom #2/A:112@O 458.732 385.594 395.695
Atom #2/A:112@CB 457.156 383.119 395.460
Atom #2/A:112@OG 456.199 384.093 395.080
Atom #2/A:113@N 460.264 384.269 396.700
Atom #2/A:113@CA 461.380 385.137 396.339
Atom #2/A:113@C 461.669 385.045 394.846
Atom #2/A:113@O 461.981 386.050 394.197
Atom #2/A:113@CB 462.621 384.787 397.179
Atom #2/A:114@N 461.575 383.839 394.279
Atom #2/A:114@CA 461.872 383.642 392.864
Atom #2/A:114@C 460.893 384.372 391.953
Atom #2/A:114@O 461.249 384.692 390.813
Atom #2/A:114@CB 461.877 382.149 392.534
Atom #2/A:114@CG 462.209 381.872 391.080
Atom #2/A:114@OD1 463.395 381.994 390.707
Atom #2/A:114@OD2 461.284 381.536 390.311
Atom #2/A:115@N 459.674 384.642 392.424
Atom #2/A:115@CA 458.699 385.343 391.595
Atom #2/A:115@C 459.176 386.748 391.250
Atom #2/A:115@O 459.017 387.204 390.112
Atom #2/A:115@CB 457.345 385.390 392.305
Atom #2/A:115@CG 456.113 385.639 391.432
Atom #2/A:115@CD1 454.928 384.839 391.947
Atom #2/A:115@CD2 455.773 387.121 391.376
Atom #2/A:116@N 459.763 387.448 392.217
Atom #2/A:116@CA 460.283 388.786 391.966
Atom #2/A:116@C 461.582 388.692 391.174
Atom #2/A:116@O 462.592 388.190 391.680
Atom #2/A:116@CB 460.507 389.523 393.283
Atom #2/A:117@N 461.555 389.173 389.935
Atom #2/A:117@CA 462.715 389.113 389.056
Atom #2/A:117@C 462.553 390.174 387.977
Atom #2/A:117@O 461.498 390.800 387.845
Atom #2/A:117@CB 462.878 387.715 388.451
Atom #2/A:118@N 463.616 390.372 387.200
Atom #2/A:118@CA 463.612 391.348 386.109
Atom #2/A:118@C 463.095 390.701 384.822
Atom #2/A:118@O 463.742 390.700 383.776
Atom #2/A:118@CB 465.006 391.933 385.921
Atom #2/A:118@CG 465.502 392.661 387.156
Atom #2/A:118@OD1 464.698 393.379 387.787
Atom #2/A:118@OD2 466.694 392.512 387.496
Atom #2/A:119@N 461.894 390.140 384.929
Atom #2/A:119@CA 461.263 389.485 383.798
Atom #2/A:119@C 460.886 390.513 382.731
Atom #2/A:119@O 460.618 391.676 383.047
Atom #2/A:119@CB 460.023 388.722 384.260
Atom #2/A:119@OG 459.384 388.053 383.189
Atom #2/A:120@N 460.875 390.113 381.455
Atom #2/A:120@CA 460.513 391.070 380.394
Atom #2/A:120@C 459.129 391.671 380.562
Atom #2/A:120@O 458.908 392.813 380.135
Atom #2/A:120@CB 460.614 390.227 379.112
Atom #2/A:120@CG 460.617 388.798 379.575
Atom #2/A:120@CD 461.301 388.819 380.900
Atom #2/A:121@N 458.185 390.940 381.158
Atom #2/A:121@CA 456.877 391.528 381.429
Atom #2/A:121@C 456.997 392.683 382.416
Atom #2/A:121@O 456.340 393.718 382.259
Atom #2/A:121@CB 455.907 390.461 381.941
Atom #2/A:121@CG 456.479 389.488 382.962
Atom #2/A:121@CD 456.433 390.031 384.378
Atom #2/A:121@OE1 457.135 389.482 385.254
Atom #2/A:121@OE2 455.692 391.007 384.617
Atom #2/A:122@N 457.849 392.530 383.432
Atom #2/A:122@CA 458.122 393.638 384.338
Atom #2/A:122@C 458.778 394.794 383.594
Atom #2/A:122@O 458.460 395.959 383.854
Atom #2/A:122@CB 459.000 393.152 385.495
Atom #2/A:122@CG 459.055 394.040 386.746
Atom #2/A:122@SD 459.595 395.757 386.584
Atom #2/A:122@CE 461.373 395.566 386.595
Atom #2/A:123@N 459.682 394.488 382.660
Atom #2/A:123@CA 460.326 395.539 381.878
Atom #2/A:123@C 459.303 396.342 381.086
Atom #2/A:123@O 459.340 397.578 381.085
Atom #2/A:123@CB 461.365 394.927 380.937
Atom #2/A:123@CG 462.491 394.172 381.631
Atom #2/A:123@CD 463.552 395.115 382.177
Atom #2/A:123@CE 463.435 395.273 383.684
Atom #2/A:123@NZ 464.535 396.102 384.248
Atom #2/A:124@N 458.375 395.659 380.412
Atom #2/A:124@CA 457.375 396.376 379.628
Atom #2/A:124@C 456.373 397.097 380.521
Atom #2/A:124@O 455.851 398.148 380.135
Atom #2/A:124@CB 456.665 395.422 378.664
Atom #2/A:124@CG 455.844 394.245 379.193
Atom #2/A:124@CD1 454.390 394.634 379.424
Atom #2/A:124@CD2 455.936 393.066 378.235
Atom #2/A:125@N 456.090 396.557 381.710
Atom #2/A:125@CA 455.237 397.270 382.655
Atom #2/A:125@C 455.894 398.570 383.104
Atom #2/A:125@O 455.245 399.623 383.146
Atom #2/A:125@CB 454.930 396.373 383.856
Atom #2/A:125@CG 454.588 396.967 385.229
Atom #2/A:125@CD1 453.422 397.951 385.171
Atom #2/A:125@CD2 454.301 395.855 386.223
Atom #2/A:126@N 457.184 398.514 383.437
Atom #2/A:126@CA 457.900 399.719 383.843
Atom #2/A:126@C 457.990 400.716 382.695
Atom #2/A:126@O 457.859 401.928 382.906
Atom #2/A:126@CB 459.293 399.354 384.352
Atom #2/A:126@OG 459.215 398.594 385.546
Atom #2/A:127@N 458.215 400.224 381.474
Atom #2/A:127@CA 458.233 401.103 380.310
Atom #2/A:127@C 456.870 401.737 380.065
Atom #2/A:127@O 456.793 402.877 379.598
Atom #2/A:127@CB 458.686 400.326 379.074
Atom #2/A:127@CG 459.379 401.207 378.052
Atom #2/A:127@OD1 459.013 402.395 377.940
Atom #2/A:127@OD2 460.290 400.707 377.360
Atom #2/A:128@N 455.790 401.014 380.369
Atom #2/A:128@CA 454.454 401.575 380.206
Atom #2/A:128@C 454.231 402.745 381.152
Atom #2/A:128@O 453.399 403.620 380.887
Atom #2/A:128@CB 453.399 400.493 380.430
Atom #2/A:129@N 454.969 402.784 382.261
Atom #2/A:129@CA 454.860 403.889 383.203
Atom #2/A:129@C 455.722 405.055 382.738
Atom #2/A:129@O 456.475 405.634 383.528
Atom #2/A:129@CB 455.279 403.432 384.600
Atom #2/A:129@CG 454.443 404.004 385.701
Atom #2/A:129@CD1 454.869 405.111 386.412
Atom #2/A:129@CD2 453.228 403.429 386.028
Atom #2/A:129@CE1 454.098 405.633 387.428
Atom #2/A:129@CE2 452.454 403.947 387.041
Atom #2/A:129@CZ 452.891 405.048 387.742
Atom #2/A:130@N 455.592 405.418 381.471
Atom #2/A:130@CA 456.389 406.448 380.827
Atom #2/A:130@C 455.544 407.093 379.743
Atom #2/A:130@O 454.568 406.497 379.275
Atom #2/A:130@CB 457.675 405.871 380.216
Atom #2/A:130@CG 458.913 406.002 381.093
Atom #2/A:130@CD 459.069 404.813 382.027
Atom #2/A:130@CE 460.326 404.929 382.873
Atom #2/A:130@NZ 460.432 403.824 383.866
Atom #2/A:131@N 455.882 408.313 379.329
Atom #2/A:131@CA 455.114 408.962 378.257
Atom #2/A:131@C 455.213 408.187 376.950
Atom #2/A:131@O 456.305 407.943 376.431
Atom #2/A:131@CB 455.759 410.349 378.146
Atom #2/A:131@CG 457.094 410.218 378.808
Atom #2/A:131@CD 456.900 409.215 379.896
Atom #2/A:132@N 454.050 407.791 376.423
Atom #2/A:132@CA 454.013 407.125 375.124
Atom #2/A:132@C 454.519 408.050 374.025
Atom #2/A:132@O 455.301 407.635 373.162
Atom #2/A:132@CB 452.592 406.652 374.821
Atom #2/A:132@CG 452.435 405.991 373.470
Atom #2/A:132@CD1 453.372 405.076 373.008
Atom #2/A:132@CD2 451.348 406.282 372.657
Atom #2/A:132@CE1 453.231 404.471 371.773
Atom #2/A:132@CE2 451.198 405.683 371.421
Atom #2/A:132@CZ 452.143 404.778 370.985
Atom #2/A:132@OH 451.998 404.177 369.755
Atom #2/A:133@N 454.082 409.303 374.041
Atom #2/A:133@CA 454.607 410.348 373.178
Atom #2/A:133@C 455.130 411.486 374.044
Atom #2/A:133@O 454.864 411.555 375.246
Atom #2/A:133@CB 453.539 410.860 372.200
Atom #2/A:133@CG 453.077 409.830 371.179
Atom #2/A:133@CD 451.649 409.379 371.411
Atom #2/A:133@OE1 451.150 409.410 372.536
Atom #2/A:133@NE2 450.982 408.955 370.343
Atom #2/A:134@N 455.894 412.383 373.421
Atom #2/A:134@CA 456.464 413.497 374.172
Atom #2/A:134@C 455.389 414.466 374.649
Atom #2/A:134@O 455.535 415.076 375.713
Atom #2/A:134@CB 457.506 414.226 373.323
Atom #2/A:134@CG 458.911 413.649 373.436
Atom #2/A:134@CD 459.042 412.334 372.681
Atom #2/A:134@CE 460.442 411.756 372.815
Atom #2/A:134@NZ 460.536 410.393 372.222
Atom #2/A:135@N 454.308 414.620 373.883
Atom #2/A:135@CA 453.261 415.567 374.249
Atom #2/A:135@C 452.333 415.030 375.335
Atom #2/A:135@O 451.807 415.817 376.132
Atom #2/A:135@CB 452.447 415.956 373.012
Atom #2/A:135@OG1 451.344 416.783 373.402
Atom #2/A:135@CG2 451.925 414.717 372.296
Atom #2/A:136@N 452.119 413.719 375.391
Atom #2/A:136@CA 451.144 413.119 376.292
Atom #2/A:136@C 451.828 412.139 377.235
Atom #2/A:136@O 452.616 411.292 376.804
Atom #2/A:136@CB 450.038 412.408 375.505
Atom #2/A:136@CG 449.390 411.277 376.251
Atom #2/A:136@CD1 448.524 411.529 377.302
Atom #2/A:136@CD2 449.642 409.962 375.895
Atom #2/A:136@CE1 447.927 410.490 377.988
Atom #2/A:136@CE2 449.048 408.919 376.579
Atom #2/A:136@CZ 448.189 409.184 377.627
Atom #2/A:137@N 451.510 412.250 378.524
Atom #2/A:137@CA 452.083 411.387 379.553
Atom #2/A:137@C 450.951 410.662 380.267
Atom #2/A:137@O 450.030 411.321 380.792
Atom #2/A:137@CB 452.928 412.199 380.538
Atom #2/A:137@CG 454.018 411.402 381.237
Atom #2/A:137@CD 453.461 410.410 382.238
Atom #2/A:137@OE1 452.513 410.712 382.961
Atom #2/A:137@NE2 454.048 409.219 382.283
Atom #2/A:138@N 450.968 409.327 380.322
Atom #2/A:138@CA 449.890 408.600 381.005
Atom #2/A:138@C 450.128 408.462 382.500
Atom #2/A:138@O 451.258 408.226 382.940
Atom #2/A:138@CB 449.900 407.235 380.310
Atom #2/A:138@CG 451.300 407.067 379.800
Atom #2/A:138@CD 451.962 408.420 379.728
Atom #2/A:139@N 449.064 408.597 383.290
Atom #2/A:139@CA 449.155 408.521 384.743
Atom #2/A:139@C 448.503 407.273 385.322
Atom #2/A:139@O 449.112 406.593 386.153
Atom #2/A:139@CB 448.518 409.760 385.375
Atom #2/A:139@CG 449.371 410.986 385.289
Atom #2/A:139@ND1 449.789 411.681 386.403
Atom #2/A:139@CD2 449.882 411.643 384.221
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Atom #2/A:285@CE1 440.718 401.961 378.536
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Atom #2/A:286@CG2 448.875 395.196 379.598
Atom #2/A:286@CD1 449.807 398.012 380.246
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Atom #2/A:295@CD 451.756 373.399 380.176
Atom #2/A:295@NE 451.734 372.448 381.279
Atom #2/A:295@CZ 452.004 371.155 381.156
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Atom #2/A:296@N 447.243 374.258 378.470
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Atom #2/A:296@CZ 443.380 378.187 378.673
Atom #2/A:296@NH1 442.704 378.109 377.538
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Atom #2/A:297@N 445.740 372.459 376.928
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Atom #2/A:323@C 436.000 376.768 379.617
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Atom #2/A:324@C 438.273 378.843 379.107
Atom #2/A:324@O 439.346 379.059 379.677
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Atom #2/A:324@CG 439.228 376.086 376.756
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Atom #2/A:324@CD2 440.482 376.023 376.173
Atom #2/A:324@CE1 439.145 373.687 376.755
Atom #2/A:324@CE2 441.064 374.807 375.878
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Atom #2/A:325@O 438.285 381.410 381.962
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Atom #2/A:325@CG 436.268 382.306 377.914
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Atom #2/A:325@OD2 435.159 382.545 377.393
Atom #2/A:326@N 436.664 379.866 381.737
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Atom #2/A:326@C 438.030 378.753 383.464
Atom #2/A:326@O 438.697 379.046 384.463
Atom #2/A:326@CB 435.523 378.675 383.564
Atom #2/A:326@CG 434.284 379.502 383.887
Atom #2/A:326@CD 433.200 379.382 382.836
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Atom #2/A:327@N 438.405 377.791 382.618
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Atom #2/B:302@CA 431.538 407.220 363.069
Atom #2/B:302@C 431.218 405.734 362.911
Atom #2/B:302@O 431.510 404.906 363.775
Atom #2/B:302@CB 432.416 407.465 364.299
Atom #2/B:302@OG 433.584 406.664 364.252
Atom #2/B:303@N 430.601 405.409 361.771
Atom #2/B:303@CA 430.126 404.048 361.544
Atom #2/B:303@C 431.265 403.038 361.516
Atom #2/B:303@O 431.056 401.864 361.838
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Atom #2/B:303@OG 429.032 402.640 359.895
Atom #2/B:304@N 432.466 403.467 361.129
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Atom #2/B:304@C 433.982 401.999 362.405
Atom #2/B:304@O 434.265 400.806 362.554
Atom #2/B:304@CB 434.766 403.199 360.338
Atom #2/B:304@CG 435.870 402.250 359.971
Atom #2/B:304@CD1 435.677 401.292 358.989
Atom #2/B:304@CD2 437.105 402.325 360.591
Atom #2/B:304@CE1 436.691 400.416 358.644
Atom #2/B:304@CE2 438.122 401.455 360.248
Atom #2/B:304@CZ 437.915 400.499 359.274
Atom #2/B:305@N 434.008 402.866 363.415
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Atom #2/B:305@C 433.206 402.164 365.662
Atom #2/B:305@O 433.409 401.785 366.819
Atom #2/B:305@CB 435.237 403.581 365.411
Atom #2/B:305@OG1 434.479 404.796 365.458
Atom #2/B:305@CG2 436.507 403.814 364.615
Atom #2/B:306@N 431.977 402.306 365.159
Atom #2/B:306@CA 430.764 402.073 365.947
Atom #2/B:306@C 430.755 402.922 367.217
Atom #2/B:306@O 430.305 402.482 368.277
Atom #2/B:306@CB 430.599 400.590 366.286
Atom #2/B:306@CG 430.992 399.647 365.166
Atom #2/B:306@CD 430.930 398.202 365.622
Atom #2/B:306@NE 432.054 397.851 366.481
Atom #2/B:306@CZ 432.392 396.610 366.799
Atom #2/B:306@NH1 431.710 395.570 366.349
Atom #2/B:306@NH2 433.441 396.406 367.590
Atom #2/B:307@N 431.254 404.151 367.111
Atom #2/B:307@CA 431.365 405.062 368.243
Atom #2/B:307@C 430.538 406.305 367.962
Atom #2/B:307@O 430.862 407.073 367.051
Atom #2/B:307@CB 432.824 405.443 368.500
Atom #2/B:307@CG 433.594 404.412 369.261
Atom #2/B:307@ND1 433.724 403.110 368.827
Atom #2/B:307@CD2 434.280 404.490 370.425
Atom #2/B:307@CE1 434.453 402.431 369.693
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Atom #2/B:308@N 429.492 406.514 368.754
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Atom #2/B:308@CB 427.141 407.273 368.829
Atom #2/B:308@CG1 427.003 406.427 370.080
Atom #2/B:308@CG2 426.280 408.516 368.941
Atom #2/B:309@N 429.150 409.975 369.100
Atom #2/B:309@CA 429.499 411.121 369.925
Atom #2/B:309@C 428.297 412.045 370.051
Atom #2/B:309@O 427.609 412.321 369.066
Atom #2/B:309@CB 430.684 411.883 369.330
Atom #2/B:309@CG 431.811 410.999 368.882
Atom #2/B:309@CD1 432.815 410.637 369.760
Atom #2/B:309@CD2 431.868 410.532 367.580
Atom #2/B:309@CE1 433.853 409.824 369.350
Atom #2/B:309@CE2 432.904 409.717 367.166
Atom #2/B:309@CZ 433.896 409.364 368.052
Atom #2/B:310@N 428.047 412.516 371.270
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Atom #2/B:310@C 427.475 414.745 372.038
Atom #2/B:310@O 428.278 414.792 372.974
Atom #2/B:310@CB 425.998 412.810 372.604
Atom #2/B:310@OG1 426.732 412.554 373.808
Atom #2/B:310@CG2 425.400 411.514 372.095
Atom #2/B:311@N 427.028 415.825 371.405
Atom #2/B:311@CA 427.490 417.171 371.712
Atom #2/B:311@C 426.388 417.939 372.426
Atom #2/B:311@O 425.241 417.959 371.966
Atom #2/B:311@CB 427.909 417.906 370.438
Atom #2/B:311@SG 428.786 419.460 370.716
Atom #2/B:312@N 426.740 418.570 373.544
Atom #2/B:312@CA 425.802 419.356 374.331
Atom #2/B:312@C 426.421 420.719 374.607
Atom #2/B:312@O 427.549 421.006 374.194
Atom #2/B:312@CB 425.439 418.644 375.637
Atom #2/B:312@OG 426.541 418.635 376.527
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Atom #2/B:313@CA 426.160 422.906 375.621
Atom #2/B:313@C 427.356 422.862 376.567
Atom #2/B:313@O 428.309 423.635 376.406
Atom #2/B:313@CB 425.032 423.751 376.217
Atom #2/B:313@CG 425.468 425.114 376.737
Atom #2/B:313@CD 425.705 425.120 378.236
Atom #2/B:313@OE1 425.564 424.094 378.900
Atom #2/B:313@NE2 426.065 426.278 378.774
Atom #2/B:314@N 427.332 421.966 377.552
Atom #2/B:314@CA 428.346 421.947 378.599
Atom #2/B:314@C 429.322 420.783 378.488
Atom #2/B:314@O 430.514 420.962 378.755
Atom #2/B:314@CB 427.678 421.915 379.976
Atom #2/B:314@OG 427.191 423.197 380.333
Atom #2/B:315@N 428.857 419.594 378.106
Atom #2/B:315@CA 429.706 418.421 378.127
Atom #2/B:315@C 429.519 417.562 376.893
Atom #2/B:315@O 428.494 417.619 376.210
Atom #2/B:316@N 430.543 416.752 376.623
Atom #2/B:316@CA 430.571 415.829 375.496
Atom #2/B:316@C 430.797 414.425 376.035
Atom #2/B:316@O 431.579 414.230 376.972
Atom #2/B:316@CB 431.670 416.198 374.478
Atom #2/B:316@CG1 431.684 417.705 374.217
Atom #2/B:316@CG2 431.472 415.437 373.179
Atom #2/B:316@CD1 430.400 418.238 373.636
Atom #2/B:317@N 430.112 413.448 375.448
Atom #2/B:317@CA 430.245 412.059 375.857
Atom #2/B:317@C 430.403 411.172 374.630
Atom #2/B:317@O 429.940 411.508 373.537
Atom #2/B:317@CB 429.041 411.604 376.688
Atom #2/B:317@CG 428.949 412.281 378.045
Atom #2/B:317@CD 427.773 411.762 378.854
Atom #2/B:317@CE 427.730 412.398 380.234
Atom #2/B:317@NZ 426.587 411.899 381.045
Atom #2/B:318@N 431.068 410.036 374.825
Atom #2/B:318@CA 431.334 409.071 373.765
Atom #2/B:318@C 430.738 407.732 374.176
Atom #2/B:318@O 430.906 407.299 375.322
Atom #2/B:318@CB 432.841 408.933 373.484
Atom #2/B:318@CG1 433.077 408.004 372.305
Atom #2/B:318@CG2 433.462 410.298 373.234
Atom #2/B:319@N 430.049 407.080 373.243
Atom #2/B:319@CA 429.346 405.836 373.511
Atom #2/B:319@C 429.684 404.806 372.444
Atom #2/B:319@O 429.996 405.150 371.302
Atom #2/B:319@CB 427.825 406.048 373.557
Atom #2/B:319@CG 427.408 407.389 374.080
Atom #2/B:319@CD1 427.476 408.584 373.423
Atom #2/B:319@CD2 426.832 407.669 375.361
Atom #2/B:319@NE1 426.994 409.590 374.222
Atom #2/B:319@CE2 426.590 409.055 375.416
Atom #2/B:319@CE3 426.504 406.883 376.468
Atom #2/B:319@CZ2 426.034 409.670 376.532
Atom #2/B:319@CZ3 425.953 407.496 377.577
Atom #2/B:319@CH2 425.724 408.877 377.600
Atom #2/B:320@N 429.617 403.537 372.831
Atom #2/B:320@CA 429.841 402.418 371.928
Atom #2/B:320@C 428.544 401.641 371.748
Atom #2/B:320@O 427.750 401.515 372.685
Atom #2/B:320@CB 430.938 401.492 372.458
Atom #2/B:320@CG 431.394 400.478 371.428
Atom #2/B:320@OD1 430.880 400.436 370.310
Atom #2/B:320@ND2 432.365 399.654 371.801
Atom #2/B:321@N 428.335 401.119 370.539
Atom #2/B:321@CA 427.098 400.437 370.185
Atom #2/B:321@C 427.225 398.919 370.235
Atom #2/B:321@O 426.321 398.214 369.776
Atom #2/B:321@CB 426.635 400.879 368.798
Atom #2/B:321@CG 426.015 402.273 368.712
Atom #2/B:321@CD1 425.346 402.477 367.365
Atom #2/B:321@CD2 425.024 402.487 369.845
Atom #2/B:322@N 428.328 398.401 370.770
Atom #2/B:322@CA 428.505 396.955 370.841
Atom #2/B:322@C 427.562 396.342 371.870
Atom #2/B:322@O 426.917 395.320 371.613
Atom #2/B:322@CB 429.975 396.612 371.146
Atom #2/B:322@CG1 430.123 395.131 371.447
Atom #2/B:322@CG2 430.859 397.013 369.979
Atom #2/B:323@N 427.463 396.960 373.045
Atom #2/B:323@CA 426.649 396.404 374.118
Atom #2/B:323@C 425.165 396.624 373.852
Atom #2/B:323@O 424.759 397.654 373.303
Atom #2/B:323@CB 427.042 397.028 375.455
Atom #2/B:323@CG 427.355 398.504 375.340
Atom #2/B:323@OD1 426.608 399.263 374.723
Atom #2/B:323@ND2 428.467 398.921 375.935
Atom #2/B:324@N 424.353 395.649 374.251
Atom #2/B:324@CA 422.906 395.704 374.086
Atom #2/B:324@C 422.272 396.142 375.398
Atom #2/B:324@O 422.449 395.483 376.429
Atom #2/B:324@CB 422.347 394.349 373.651
Atom #2/B:324@CG 422.657 393.970 372.214
Atom #2/B:324@CD 423.977 393.243 372.078
Atom #2/B:324@OE1 424.528 392.747 373.059
Atom #2/B:324@NE2 424.491 393.175 370.856
Atom #2/B:325@N 421.537 397.250 375.359
Atom #2/B:325@CA 420.866 397.780 376.539
Atom #2/B:325@C 419.741 398.696 376.079
Atom #2/B:325@O 419.828 399.325 375.021
Atom #2/B:325@CB 421.858 398.518 377.464
Atom #2/B:325@CG1 422.398 399.763 376.780
Atom #2/B:325@CG2 421.203 398.859 378.794
Atom #2/B:326@N 418.671 398.753 376.872
Atom #2/B:326@CA 417.565 399.649 376.555
Atom #2/B:326@C 417.969 401.103 376.754
Atom #2/B:326@O 417.952 401.902 375.812
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Atom #2/B:327@N 418.342 401.462 377.978
Atom #2/B:327@CA 418.749 402.817 378.319
Atom #2/B:327@C 420.234 402.810 378.652
Atom #2/B:327@O 420.677 402.043 379.514
Atom #2/B:327@CB 417.938 403.353 379.498
Atom #2/B:327@CG 416.430 403.352 379.285
Atom #2/B:327@CD 415.998 404.174 378.087
Atom #2/B:327@OE1 415.987 403.632 376.961
Atom #2/B:327@OE2 415.665 405.362 378.273
Atom #2/B:328@N 420.996 403.662 377.973
Atom #2/B:328@CA 422.423 403.817 378.226
Atom #2/B:328@C 422.646 405.100 379.011
Atom #2/B:328@O 422.306 406.190 378.540
Atom #2/B:328@CB 423.219 403.836 376.922
Atom #2/B:328@CG 424.425 402.917 376.965
Atom #2/B:328@OD1 424.425 401.967 377.777
Atom #2/B:328@OD2 425.379 403.148 376.192
Atom #2/B:329@N 423.207 404.963 380.214
Atom #2/B:329@CA 423.528 406.099 381.061
Atom #2/B:329@C 425.021 406.265 381.297
Atom #2/B:329@O 425.469 407.388 381.552
Atom #2/B:329@CB 422.814 405.966 382.416
Atom #2/B:329@CG 422.939 407.176 383.325
Atom #2/B:329@CD 422.158 408.350 382.763
Atom #2/B:329@NE 422.197 409.510 383.644
Atom #2/B:329@CZ 421.716 410.705 383.328
Atom #2/B:329@NH1 421.149 410.933 382.155
Atom #2/B:329@NH2 421.807 411.695 384.212
Atom #2/B:330@N 425.799 405.185 381.201
Atom #2/B:330@CA 427.231 405.240 381.448
Atom #2/B:330@C 427.974 405.297 380.122
Atom #2/B:330@O 427.981 404.299 379.387
Atom #2/B:330@CB 427.681 404.025 382.254
Atom #2/B:330@CG 427.033 403.959 383.619
Atom #2/B:330@OD1 426.672 405.025 384.158
Atom #2/B:330@OD2 426.886 402.840 384.154
Atom #2/B:331@N 428.609 406.411 379.779
Atom #2/B:331@CA 429.367 406.475 378.529
Atom #2/B:331@C 430.746 405.852 378.679
Atom #2/B:331@O 431.263 405.667 379.782
Atom #2/B:331@CB 429.472 407.980 378.256
Atom #2/B:331@CG 429.366 408.623 379.608
Atom #2/B:331@CD 428.726 407.650 380.567
Atom #2/B:332@N 431.338 405.518 377.532
Atom #2/B:332@CA 432.686 404.965 377.544
Atom #2/B:332@C 433.723 406.033 377.869
Atom #2/B:332@O 434.712 405.755 378.555
Atom #2/B:332@CB 432.998 404.303 376.204
Atom #2/B:332@CG 434.230 403.419 376.235
Atom #2/B:332@CD 434.336 402.526 375.018
Atom #2/B:332@OE1 433.472 402.635 374.124
Atom #2/B:332@OE2 435.280 401.712 374.957
Atom #2/B:333@N 433.515 407.257 377.385
Atom #2/B:333@CA 434.405 408.371 377.676
Atom #2/B:333@C 433.580 409.633 377.873
Atom #2/B:333@O 432.588 409.850 377.173
Atom #2/B:333@CB 435.430 408.583 376.554
Atom #2/B:333@OG 436.526 409.357 377.008
Atom #2/B:334@N 433.993 410.458 378.831
Atom #2/B:334@CA 433.324 411.716 379.135
Atom #2/B:334@C 434.340 412.843 379.029
Atom #2/B:334@O 435.367 412.822 379.716
Atom #2/B:334@CB 432.695 411.674 380.528
Atom #2/B:334@CG 432.074 412.967 380.954
Atom #2/B:334@ND1 431.033 413.553 380.267
Atom #2/B:334@CD2 432.335 413.777 382.006
Atom #2/B:334@CE1 430.685 414.674 380.873
Atom #2/B:334@NE2 431.457 414.831 381.932
Atom #2/B:335@N 434.054 413.821 378.171
Atom #2/B:335@CA 434.976 414.915 377.889
Atom #2/B:335@C 434.259 416.237 378.111
Atom #2/B:335@O 433.207 416.482 377.512
Atom #2/B:335@CB 435.508 414.832 376.454
Atom #2/B:335@CG 436.504 413.719 376.120
Atom #2/B:335@CD1 435.796 412.399 375.854
Atom #2/B:335@CD2 437.360 414.115 374.930
Atom #2/B:336@N 434.831 417.088 378.959
Atom #2/B:336@CA 434.286 418.409 379.235
Atom #2/B:336@C 435.349 419.468 378.986
Atom #2/B:336@O 436.511 419.297 379.366
Atom #2/B:336@CB 433.781 418.522 380.675
Atom #2/B:336@CG 432.564 417.677 380.980
Atom #2/B:336@CD 431.946 418.069 382.312
Atom #2/B:336@CE 432.928 417.872 383.455
Atom #2/B:336@NZ 433.282 416.441 383.651
Atom #2/B:337@N 434.942 420.562 378.345
Atom #2/B:337@CA 435.819 421.699 378.119
Atom #2/B:337@C 435.676 422.781 379.182
Atom #2/B:337@O 436.457 423.737 379.180
Atom #2/B:337@CB 435.552 422.303 376.733
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Atom #2/B:338@N 434.707 422.648 380.092
Atom #2/B:338@CA 434.490 423.669 381.111
Atom #2/B:338@C 435.510 423.597 382.238
Atom #2/B:338@O 435.583 424.526 383.049
Atom #2/B:338@CB 433.076 423.547 381.683
Atom #2/B:338@OG 432.120 424.112 380.803
Atom #2/B:339@N 436.282 422.513 382.323
Atom #2/B:339@CA 437.304 422.413 383.361
Atom #2/B:339@C 438.457 423.370 383.077
Atom #2/B:339@O 439.017 423.979 383.997
Atom #2/B:339@CB 437.783 420.955 383.499
Atom #2/B:339@CG1 438.231 420.399 382.154
Atom #2/B:339@CG2 438.901 420.851 384.527
Atom #2/B:340@N 438.824 423.527 381.802
Atom #2/B:340@CA 439.996 424.324 381.452
Atom #2/B:340@C 439.808 425.796 381.800
Atom #2/B:340@O 440.735 426.441 382.302
Atom #2/B:340@CB 440.313 424.163 379.965
Atom #2/B:340@CG 441.030 422.869 379.620
Atom #2/B:340@CD 440.079 421.700 379.465
Atom #2/B:340@OE1 438.876 421.884 379.283
Atom #2/B:340@NE2 440.615 420.488 379.539
Atom #2/B:341@N 438.624 426.347 381.544
Atom #2/B:341@CA 438.388 427.775 381.690
Atom #2/B:341@C 437.221 428.015 382.640
Atom #2/B:341@O 436.484 427.095 383.004
Atom #2/B:341@CB 438.118 428.433 380.331
Atom #2/B:341@CG 439.279 428.275 379.370
Atom #2/B:341@OD1 440.439 428.298 379.831
Atom #2/B:341@OD2 439.032 428.121 378.157
Atom #2/B:342@N 437.068 429.275 383.048
Atom #2/B:342@CA 436.030 429.626 384.013
Atom #2/B:342@C 434.637 429.422 383.429
Atom #2/B:342@O 433.784 428.770 384.041
Atom #2/B:342@CB 436.217 431.071 384.476
Atom #2/B:342@CG 437.507 431.275 385.243
Atom #2/B:342@OD1 438.424 430.457 385.166
Atom #2/B:342@ND2 437.586 432.371 385.988
Atom #2/B:343@N 434.389 429.973 382.243
Atom #2/B:343@CA 433.094 429.869 381.581
Atom #2/B:343@C 433.313 429.386 380.156
Atom #2/B:343@O 433.959 430.073 379.360
Atom #2/B:343@CB 432.357 431.212 381.583
Atom #2/B:343@CG 432.123 431.795 382.966
Atom #2/B:343@CD 431.294 430.859 383.828
Atom #2/B:343@CE 431.572 431.082 385.305
Atom #2/B:343@NZ 432.706 430.251 385.791
Atom #2/B:344@N 432.779 428.209 379.839
Atom #2/B:344@CA 432.911 427.617 378.514
Atom #2/B:344@C 431.520 427.268 378.006
Atom #2/B:344@O 430.805 426.481 378.637
Atom #2/B:344@CB 433.808 426.369 378.525
Atom #2/B:344@CG1 433.923 425.789 377.126
Atom #2/B:344@CG2 435.179 426.710 379.077
Atom #2/B:345@N 431.140 427.847 376.872
Atom #2/B:345@CA 429.884 427.544 376.202
Atom #2/B:345@C 430.200 426.944 374.841
Atom #2/B:345@O 430.902 427.565 374.038
Atom #2/B:345@CB 429.008 428.794 376.039
Atom #2/B:345@CG 428.927 429.693 377.257
Atom #2/B:345@CD1 427.773 429.741 378.027
Atom #2/B:345@CD2 429.986 430.517 377.618
Atom #2/B:345@CE1 427.684 430.564 379.134
Atom #2/B:345@CE2 429.907 431.342 378.723
Atom #2/B:345@CZ 428.755 431.362 379.477
Atom #2/B:345@OH 428.670 432.185 380.577
Atom #2/B:346@N 429.674 425.751 374.581
Atom #2/B:346@CA 429.973 425.007 373.366
Atom #2/B:346@C 428.780 425.043 372.421
Atom #2/B:346@O 427.630 424.916 372.854
Atom #2/B:346@CB 430.339 423.558 373.693
Atom #2/B:346@CG 431.718 423.354 374.322
Atom #2/B:346@CD1 431.804 421.998 375.003
Atom #2/B:346@CD2 432.811 423.504 373.277
Atom #2/B:347@N 429.056 425.221 371.128
Atom #2/B:347@CA 427.986 425.325 370.142
Atom #2/B:347@C 428.186 424.408 368.941
Atom #2/B:347@O 427.206 423.973 368.329
Atom #2/B:347@CB 427.844 426.773 369.666
Atom #2/B:347@CG 426.786 427.567 370.411
Atom #2/B:347@CD 427.332 428.145 371.705
Atom #2/B:347@NE 426.398 429.077 372.325
Atom #2/B:347@CZ 426.163 430.307 371.891
Atom #2/B:347@NH1 426.781 430.795 370.827
Atom #2/B:347@NH2 425.287 431.069 372.539
Atom #2/B:348@N 429.433 424.106 368.586
Atom #2/B:348@CA 429.721 423.403 367.344
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Atom #2/B:412@CZ 442.427 432.588 364.701
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Atom #2/B:413@N 441.620 430.770 358.949
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Atom #2/B:414@CE3 441.385 427.124 361.921
Atom #2/B:414@CZ2 440.745 429.437 363.408
Atom #2/B:414@CZ3 440.094 427.375 362.341
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Atom #2/B:417@O 452.099 420.835 361.647
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Atom #2/B:417@NE 450.657 417.036 359.023
Atom #2/B:417@CZ 450.377 416.526 357.832
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Atom #2/B:420@CB 450.813 428.926 360.287
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Atom #2/B:422@O 446.710 432.790 354.367
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Atom #2/B:422@CG1 445.807 429.114 355.462
Atom #2/B:422@CG2 447.639 429.865 353.947
Atom #2/B:423@N 444.985 432.246 355.689
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Atom #2/B:423@CZ 443.494 432.183 350.333
Atom #2/B:423@NH1 443.189 433.436 350.036
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Atom #2/B:426@CG 435.699 441.647 356.931
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Atom #2/B:433@CZ 424.641 435.133 363.903
Atom #2/B:433@NH1 425.820 435.661 363.619
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Atom #2/B:442@CG1 435.831 427.829 349.425
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Atom #2/B:452@CZ 427.978 437.563 352.088
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Atom #2/B:454@CE3 435.270 433.615 350.146
Atom #2/B:454@CZ2 433.127 435.447 350.389
Atom #2/B:454@CZ3 435.212 434.519 351.183
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Atom #2/B:457@O 443.364 430.840 342.679
Atom #2/B:457@CB 441.909 427.781 341.931
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Atom #2/B:457@CZ 444.082 426.706 344.733
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Atom #2/B:457@NH2 444.897 427.458 345.468
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Atom #2/B:458@C 440.892 433.091 342.419
Atom #2/B:458@O 440.902 434.293 342.138
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Atom #2/B:458@SD 438.261 431.139 341.214
Atom #2/B:458@CE 437.669 432.819 341.319
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Atom #2/B:459@O 439.815 435.804 344.873
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Atom #2/B:460@O 435.677 433.665 343.710
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Atom #2/B:461@CG2 433.352 436.740 346.516
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Atom #2/B:462@C 430.430 433.875 341.388
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Atom #2/B:462@OG 431.047 431.241 342.440
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Atom #2/B:463@C 427.628 434.780 343.409
Atom #2/B:463@O 428.059 434.520 344.536
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Atom #2/B:463@CD2 424.887 432.844 342.786
Atom #2/B:464@N 426.709 435.712 343.173
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Atom #2/B:467@CZ 417.712 431.463 347.709
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Atom #2/B:482@N 423.949 419.181 343.976
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Atom #2/B:482@CZ2 418.686 419.782 340.058
Atom #2/B:482@CZ3 418.426 421.519 341.714
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Atom #2/F:98@NE2 367.635 444.636 272.323
Atom #2/F:99@N 368.687 444.581 279.127
Atom #2/F:99@CA 368.102 444.692 280.458
Atom #2/F:99@C 368.738 445.825 281.250
Atom #2/F:99@O 368.038 446.589 281.925
Atom #2/F:99@CB 368.264 443.370 281.204
Atom #2/F:99@OG1 367.377 442.393 280.645
Atom #2/F:99@CG2 367.963 443.547 282.683
Atom #2/F:100@N 370.064 445.953 281.175
Atom #2/F:100@CA 370.765 446.926 282.006
Atom #2/F:100@C 370.311 448.348 281.709
Atom #2/F:100@O 370.066 449.133 282.632
Atom #2/F:100@CB 372.273 446.798 281.796
Atom #2/F:100@CG 373.106 447.516 282.841
Atom #2/F:100@CD 373.033 446.805 284.189
Atom #2/F:100@NE 373.307 445.370 284.134
Atom #2/F:100@CZ 374.360 444.797 283.560
Atom #2/F:100@NH1 375.344 445.510 283.035
Atom #2/F:100@NH2 374.439 443.470 283.534
Atom #2/F:101@N 370.187 448.700 280.429
Atom #2/F:101@CA 369.823 450.068 280.075
Atom #2/F:101@C 368.377 450.371 280.445
Atom #2/F:101@O 368.068 451.477 280.908
Atom #2/F:101@CB 370.058 450.302 278.584
Atom #2/F:101@CG 371.487 450.677 278.250
Atom #2/F:101@SD 371.843 452.428 278.470
Atom #2/F:101@CE 371.598 453.020 276.801
Atom #2/F:102@N 367.477 449.407 280.246
Atom #2/F:102@CA 366.072 449.633 280.566
Atom #2/F:102@C 365.880 449.880 282.057
Atom #2/F:102@O 365.105 450.758 282.451
Atom #2/F:102@CB 365.232 448.447 280.094
Atom #2/F:102@CG 364.049 448.119 280.983
Atom #2/F:102@CD 363.343 446.862 280.512
Atom #2/F:102@CE 364.083 445.617 280.957
Atom #2/F:102@NZ 364.600 445.752 282.342
Atom #2/F:103@N 366.585 449.123 282.901
Atom #2/F:103@CA 366.462 449.314 284.343
Atom #2/F:103@C 366.944 450.694 284.766
Atom #2/F:103@O 366.298 451.360 285.583
Atom #2/F:103@CB 367.235 448.228 285.086
Atom #2/F:103@CG 366.755 446.836 284.744
Atom #2/F:103@OD1 365.811 446.668 283.975
Atom #2/F:103@ND2 367.404 445.828 285.314
Atom #2/F:104@N 368.078 451.142 284.227
Atom #2/F:104@CA 368.595 452.459 284.586
Atom #2/F:104@C 367.681 453.555 284.054
Atom #2/F:104@O 367.397 454.539 284.746
Atom #2/F:104@CB 370.039 452.630 284.081
Atom #2/F:104@CG1 370.917 451.464 284.544
Atom #2/F:104@CG2 370.615 453.960 284.546
Atom #2/F:104@CD1 370.747 451.096 286.006
Atom #2/F:105@N 367.206 453.402 282.816
Atom #2/F:105@CA 366.356 454.428 282.224
Atom #2/F:105@C 365.051 454.579 282.996
Atom #2/F:105@O 364.587 455.702 283.228
Atom #2/F:105@CB 366.077 454.098 280.760
Atom #2/F:105@CG 365.894 455.309 279.846
Atom #2/F:105@CD1 367.176 456.122 279.796
Atom #2/F:105@CD2 365.481 454.878 278.453
Atom #2/F:106@N 364.446 453.460 283.401
Atom #2/F:106@CA 363.235 453.529 284.211
Atom #2/F:106@C 363.520 454.158 285.567
Atom #2/F:106@O 362.699 454.920 286.091
Atom #2/F:106@CB 362.635 452.135 284.384
Atom #2/F:106@CG 362.055 451.475 283.133
Atom #2/F:106@CD1 361.594 450.064 283.449
Atom #2/F:106@CD2 360.914 452.299 282.565
Atom #2/F:107@N 364.677 453.844 286.153
Atom #2/F:107@CA 365.033 454.419 287.444
Atom #2/F:107@C 365.162 455.932 287.356
Atom #2/F:107@O 364.689 456.655 288.240
Atom #2/F:107@CB 366.333 453.800 287.953
Atom #2/F:107@CG 366.108 452.481 288.659
Atom #2/F:107@OD1 365.055 451.861 288.515
Atom #2/F:107@ND2 367.096 452.047 289.430
Atom #2/F:108@N 365.800 456.431 286.298
Atom #2/F:108@CA 365.891 457.875 286.117
Atom #2/F:108@C 364.522 458.477 285.833
Atom #2/F:108@O 364.231 459.601 286.260
Atom #2/F:108@CB 366.873 458.203 284.994
Atom #2/F:108@CG 368.337 458.389 285.420
Atom #2/F:108@SD 368.654 459.139 287.039
Atom #2/F:108@CE 368.624 457.730 288.153
Atom #2/F:109@N 363.668 457.743 285.116
Atom #2/F:109@CA 362.302 458.203 284.900
Atom #2/F:109@C 361.548 458.313 286.218
Atom #2/F:109@O 360.787 459.263 286.432
Atom #2/F:109@CB 361.573 457.265 283.940
Atom #2/F:110@N 361.746 457.344 287.115
Atom #2/F:110@CA 361.131 457.421 288.436
Atom #2/F:110@C 361.647 458.625 289.212
Atom #2/F:110@O 360.884 459.287 289.925
Atom #2/F:110@CB 361.389 456.130 289.211
Atom #2/F:111@N 362.942 458.921 289.088
Atom #2/F:111@CA 363.509 460.073 289.782
Atom #2/F:111@C 362.885 461.376 289.298
Atom #2/F:111@O 362.606 462.273 290.101
Atom #2/F:111@CB 365.026 460.103 289.596
Atom #2/F:111@CG 365.692 461.266 290.268
Atom #2/F:111@CD1 366.273 461.274 291.500
Atom #2/F:111@CD2 365.854 462.589 289.739
Atom #2/F:111@NE1 366.783 462.520 291.777
Atom #2/F:111@CE2 366.538 463.345 290.711
Atom #2/F:111@CE3 365.486 463.207 288.540
Atom #2/F:111@CZ2 366.861 464.686 290.521
Atom #2/F:111@CZ3 365.807 464.538 288.355
Atom #2/F:111@CH2 366.487 465.263 289.339
Atom #2/F:112@N 362.669 461.503 287.987
Atom #2/F:112@CA 362.145 462.750 287.441
Atom #2/F:112@C 360.731 463.050 287.918
Atom #2/F:112@O 360.296 464.204 287.842
Atom #2/F:112@CB 362.187 462.715 285.914
Atom #2/F:112@CG 363.391 463.387 285.331
Atom #2/F:112@ND1 363.662 464.725 285.522
Atom #2/F:112@CD2 364.398 462.906 284.565
Atom #2/F:112@CE1 364.782 465.040 284.897
Atom #2/F:112@NE2 365.249 463.954 284.307
Atom #2/F:113@N 360.002 462.041 288.401
Atom #2/F:113@CA 358.670 462.289 288.941
Atom #2/F:113@C 358.733 463.187 290.171
Atom #2/F:113@O 357.898 464.082 290.339
Atom #2/F:113@CB 357.981 460.963 289.273
Atom #2/F:113@CG 357.857 459.929 288.126
Atom #2/F:113@CD 357.735 460.474 286.686
Atom #2/F:113@CE 356.626 461.516 286.497
Atom #2/F:113@NZ 356.659 462.124 285.139
Atom #2/F:114@N 359.716 462.965 291.036
Atom #2/F:114@CA 359.900 463.800 292.216
Atom #2/F:114@C 360.892 464.923 291.933
Atom #2/F:114@O 360.860 465.972 292.576
Atom #2/F:114@CB 360.378 462.958 293.400
Atom #2/F:114@CG 361.877 462.719 293.425
Atom #2/F:114@CD 362.248 461.319 292.978
Atom #2/F:114@OE1 361.398 460.649 292.356
Atom #2/F:114@OE2 363.390 460.889 293.245
> getcrd sel
Atom #2/A:97@N 461.906 406.838 408.908
Atom #2/A:97@CA 461.413 405.496 409.192
Atom #2/A:97@C 460.818 404.866 407.935
Atom #2/A:97@O 460.237 403.782 407.984
Atom #2/A:97@CB 460.374 405.532 410.314
Atom #2/A:97@CG 460.161 404.176 410.958
Atom #2/A:97@OD1 461.128 403.628 411.526
Atom #2/A:97@OD2 459.027 403.657 410.892
Atom #2/A:98@N 460.969 405.562 406.806
Atom #2/A:98@CA 460.481 405.031 405.536
Atom #2/A:98@C 461.226 403.757 405.157
Atom #2/A:98@O 460.630 402.816 404.616
Atom #2/A:98@CB 460.621 406.088 404.440
Atom #2/A:98@CG 459.933 405.838 403.097
Atom #2/A:98@CD1 459.396 407.145 402.537
Atom #2/A:98@CD2 460.881 405.183 402.102
Atom #2/A:99@N 462.533 403.713 405.426
Atom #2/A:99@CA 463.307 402.510 405.139
Atom #2/A:99@C 462.816 401.330 405.970
Atom #2/A:99@O 462.777 400.197 405.484
Atom #2/A:99@CB 464.799 402.771 405.372
Atom #2/A:99@CG 465.258 402.807 406.831
Atom #2/A:99@CD 464.656 403.951 407.632
Atom #2/A:99@OE1 463.964 404.815 407.093
Atom #2/A:99@NE2 464.919 403.958 408.934
Atom #2/A:100@N 462.418 401.578 407.221
Atom #2/A:100@CA 461.841 400.511 408.033
Atom #2/A:100@C 460.494 400.066 407.475
Atom #2/A:100@O 460.159 398.873 407.509
Atom #2/A:100@CB 461.699 400.973 409.483
Atom #2/A:100@CG 463.002 400.881 410.252
Atom #2/A:100@OD1 463.780 399.941 409.990
Atom #2/A:100@OD2 463.246 401.747 411.117
Atom #2/A:101@N 459.704 401.015 406.965
Atom #2/A:101@CA 458.446 400.663 406.318
Atom #2/A:101@C 458.687 399.731 405.139
Atom #2/A:101@O 458.035 398.688 405.012
Atom #2/A:101@CB 457.713 401.925 405.864
Atom #2/A:101@CG 456.397 401.644 405.173
Atom #2/A:101@CD1 455.267 401.306 405.904
Atom #2/A:101@CD2 456.290 401.705 403.790
Atom #2/A:101@CE1 454.064 401.045 405.279
Atom #2/A:101@CE2 455.090 401.442 403.155
Atom #2/A:101@CZ 453.981 401.114 403.905
Atom #2/A:101@OH 452.783 400.855 403.278
Atom #2/A:102@N 459.640 400.087 404.274
Atom #2/A:102@CA 459.958 399.233 403.135
Atom #2/A:102@C 460.524 397.892 403.582
Atom #2/A:102@O 460.245 396.863 402.960
Atom #2/A:102@CB 460.937 399.943 402.201
Atom #2/A:102@CG 460.496 401.339 401.787
Atom #2/A:102@CD 460.986 401.698 400.392
Atom #2/A:102@CE 462.421 401.248 400.167
Atom #2/A:102@NZ 462.853 401.461 398.758
Atom #2/A:103@N 461.309 397.880 404.662
Atom #2/A:103@CA 461.879 396.632 405.157
Atom #2/A:103@C 460.791 395.674 405.625
Atom #2/A:103@O 460.802 394.488 405.276
Atom #2/A:103@CB 462.868 396.920 406.287
Atom #2/A:104@N 459.829 396.166 406.409
Atom #2/A:104@CA 458.774 395.264 406.859
Atom #2/A:104@C 457.783 394.936 405.750
Atom #2/A:104@O 457.166 393.865 405.789
Atom #2/A:104@CB 458.047 395.826 408.088
Atom #2/A:104@CG 457.043 396.894 407.784
Atom #2/A:104@ND1 455.827 396.631 407.190
Atom #2/A:104@CD2 457.054 398.222 408.043
Atom #2/A:104@CE1 455.147 397.757 407.065
Atom #2/A:104@NE2 455.870 398.737 407.576
Atom #2/A:105@N 457.628 395.817 404.756
Atom #2/A:105@CA 456.850 395.468 403.570
Atom #2/A:105@C 457.515 394.317 402.826
Atom #2/A:105@O 456.845 393.397 402.342
Atom #2/A:105@CB 456.665 396.705 402.670
Atom #2/A:105@CG1 456.311 396.292 401.249
Atom #2/A:105@CG2 455.589 397.618 403.241
Atom #2/A:106@N 458.844 394.353 402.723
Atom #2/A:106@CA 459.582 393.233 402.150
Atom #2/A:106@C 459.370 391.977 402.985
Atom #2/A:106@O 459.145 390.885 402.450
Atom #2/A:106@CB 461.076 393.589 402.036
Atom #2/A:106@CG1 461.326 394.477 400.816
Atom #2/A:106@CG2 461.929 392.331 401.981
Atom #2/A:106@CD1 462.510 395.402 400.979
Atom #2/A:107@N 459.436 392.120 404.311
Atom #2/A:107@CA 459.332 390.962 405.194
Atom #2/A:107@C 457.973 390.281 405.073
Atom #2/A:107@O 457.894 389.048 405.015
Atom #2/A:107@CB 459.593 391.382 406.639
Atom #2/A:108@N 456.889 391.062 405.039
Atom #2/A:108@CA 455.561 390.456 404.971
Atom #2/A:108@C 455.335 389.761 403.633
Atom #2/A:108@O 454.727 388.685 403.582
Atom #2/A:108@CB 454.478 391.506 405.227
Atom #2/A:108@CG 454.573 392.745 404.360
Atom #2/A:108@CD 453.668 393.851 404.873
Atom #2/A:108@CE 452.276 393.745 404.274
Atom #2/A:108@NZ 451.554 395.045 404.330
Atom #2/A:109@N 455.813 390.357 402.541
Atom #2/A:109@CA 455.657 389.768 401.210
Atom #2/A:109@C 456.829 388.825 400.928
Atom #2/A:109@O 457.772 389.134 400.199
Atom #2/A:109@CB 455.545 390.859 400.153
Atom #2/A:109@CG 454.337 391.735 400.316
Atom #2/A:109@CD1 453.073 391.181 400.427
Atom #2/A:109@CD2 454.463 393.114 400.349
Atom #2/A:109@CE1 451.960 391.983 400.577
Atom #2/A:109@CE2 453.354 393.922 400.497
Atom #2/A:109@CZ 452.100 393.356 400.611
Atom #2/A:110@N 456.745 387.640 401.536
Atom #2/A:110@CA 457.758 386.603 401.379
Atom #2/A:110@C 457.172 385.314 400.816
Atom #2/A:110@O 457.692 384.228 401.090
Atom #2/A:110@CB 458.453 386.332 402.715
Atom #2/A:110@CG 457.472 386.063 403.839
Atom #2/A:110@OD1 456.251 386.192 403.609
Atom #2/A:110@OD2 457.921 385.721 404.952
Atom #2/A:111@N 456.091 385.412 400.038
Atom #2/A:111@CA 455.443 384.217 399.506
Atom #2/A:111@C 456.363 383.466 398.550
Atom #2/A:111@O 456.453 382.235 398.596
Atom #2/A:111@CB 454.137 384.597 398.806
Atom #2/A:111@OG1 454.419 385.462 397.700
Atom #2/A:111@CG2 453.204 385.309 399.774
Atom #2/A:112@N 457.055 384.194 397.675
Atom #2/A:112@CA 457.937 383.569 396.692
Atom #2/A:112@C 459.021 384.569 396.318
Atom #2/A:112@O 458.732 385.594 395.695
Atom #2/A:112@CB 457.156 383.119 395.460
Atom #2/A:112@OG 456.199 384.093 395.080
Atom #2/A:113@N 460.264 384.269 396.700
Atom #2/A:113@CA 461.380 385.137 396.339
Atom #2/A:113@C 461.669 385.045 394.846
Atom #2/A:113@O 461.981 386.050 394.197
Atom #2/A:113@CB 462.621 384.787 397.179
Atom #2/A:114@N 461.575 383.839 394.279
Atom #2/A:114@CA 461.872 383.642 392.864
Atom #2/A:114@C 460.893 384.372 391.953
Atom #2/A:114@O 461.249 384.692 390.813
Atom #2/A:114@CB 461.877 382.149 392.534
Atom #2/A:114@CG 462.209 381.872 391.080
Atom #2/A:114@OD1 463.395 381.994 390.707
Atom #2/A:114@OD2 461.284 381.536 390.311
Atom #2/A:115@N 459.674 384.642 392.424
Atom #2/A:115@CA 458.699 385.343 391.595
Atom #2/A:115@C 459.176 386.748 391.250
Atom #2/A:115@O 459.017 387.204 390.112
Atom #2/A:115@CB 457.345 385.390 392.305
Atom #2/A:115@CG 456.113 385.639 391.432
Atom #2/A:115@CD1 454.928 384.839 391.947
Atom #2/A:115@CD2 455.773 387.121 391.376
Atom #2/A:116@N 459.763 387.448 392.217
Atom #2/A:116@CA 460.283 388.786 391.966
Atom #2/A:116@C 461.582 388.692 391.174
Atom #2/A:116@O 462.592 388.190 391.680
Atom #2/A:116@CB 460.507 389.523 393.283
Atom #2/A:117@N 461.555 389.173 389.935
Atom #2/A:117@CA 462.715 389.113 389.056
Atom #2/A:117@C 462.553 390.174 387.977
Atom #2/A:117@O 461.498 390.800 387.845
Atom #2/A:117@CB 462.878 387.715 388.451
Atom #2/A:118@N 463.616 390.372 387.200
Atom #2/A:118@CA 463.612 391.348 386.109
Atom #2/A:118@C 463.095 390.701 384.822
Atom #2/A:118@O 463.742 390.700 383.776
Atom #2/A:118@CB 465.006 391.933 385.921
Atom #2/A:118@CG 465.502 392.661 387.156
Atom #2/A:118@OD1 464.698 393.379 387.787
Atom #2/A:118@OD2 466.694 392.512 387.496
Atom #2/A:119@N 461.894 390.140 384.929
Atom #2/A:119@CA 461.263 389.485 383.798
Atom #2/A:119@C 460.886 390.513 382.731
Atom #2/A:119@O 460.618 391.676 383.047
Atom #2/A:119@CB 460.023 388.722 384.260
Atom #2/A:119@OG 459.384 388.053 383.189
Atom #2/A:120@N 460.875 390.113 381.455
Atom #2/A:120@CA 460.513 391.070 380.394
Atom #2/A:120@C 459.129 391.671 380.562
Atom #2/A:120@O 458.908 392.813 380.135
Atom #2/A:120@CB 460.614 390.227 379.112
Atom #2/A:120@CG 460.617 388.798 379.575
Atom #2/A:120@CD 461.301 388.819 380.900
Atom #2/A:121@N 458.185 390.940 381.158
Atom #2/A:121@CA 456.877 391.528 381.429
Atom #2/A:121@C 456.997 392.683 382.416
Atom #2/A:121@O 456.340 393.718 382.259
Atom #2/A:121@CB 455.907 390.461 381.941
Atom #2/A:121@CG 456.479 389.488 382.962
Atom #2/A:121@CD 456.433 390.031 384.378
Atom #2/A:121@OE1 457.135 389.482 385.254
Atom #2/A:121@OE2 455.692 391.007 384.617
Atom #2/A:122@N 457.849 392.530 383.432
Atom #2/A:122@CA 458.122 393.638 384.338
Atom #2/A:122@C 458.778 394.794 383.594
Atom #2/A:122@O 458.460 395.959 383.854
Atom #2/A:122@CB 459.000 393.152 385.495
Atom #2/A:122@CG 459.055 394.040 386.746
Atom #2/A:122@SD 459.595 395.757 386.584
Atom #2/A:122@CE 461.373 395.566 386.595
Atom #2/A:123@N 459.682 394.488 382.660
Atom #2/A:123@CA 460.326 395.539 381.878
Atom #2/A:123@C 459.303 396.342 381.086
Atom #2/A:123@O 459.340 397.578 381.085
Atom #2/A:123@CB 461.365 394.927 380.937
Atom #2/A:123@CG 462.491 394.172 381.631
Atom #2/A:123@CD 463.552 395.115 382.177
Atom #2/A:123@CE 463.435 395.273 383.684
Atom #2/A:123@NZ 464.535 396.102 384.248
Atom #2/A:124@N 458.375 395.659 380.412
Atom #2/A:124@CA 457.375 396.376 379.628
Atom #2/A:124@C 456.373 397.097 380.521
Atom #2/A:124@O 455.851 398.148 380.135
Atom #2/A:124@CB 456.665 395.422 378.664
Atom #2/A:124@CG 455.844 394.245 379.193
Atom #2/A:124@CD1 454.390 394.634 379.424
Atom #2/A:124@CD2 455.936 393.066 378.235
Atom #2/A:125@N 456.090 396.557 381.710
Atom #2/A:125@CA 455.237 397.270 382.655
Atom #2/A:125@C 455.894 398.570 383.104
Atom #2/A:125@O 455.245 399.623 383.146
Atom #2/A:125@CB 454.930 396.373 383.856
Atom #2/A:125@CG 454.588 396.967 385.229
Atom #2/A:125@CD1 453.422 397.951 385.171
Atom #2/A:125@CD2 454.301 395.855 386.223
Atom #2/A:126@N 457.184 398.514 383.437
Atom #2/A:126@CA 457.900 399.719 383.843
Atom #2/A:126@C 457.990 400.716 382.695
Atom #2/A:126@O 457.859 401.928 382.906
Atom #2/A:126@CB 459.293 399.354 384.352
Atom #2/A:126@OG 459.215 398.594 385.546
Atom #2/A:127@N 458.215 400.224 381.474
Atom #2/A:127@CA 458.233 401.103 380.310
Atom #2/A:127@C 456.870 401.737 380.065
Atom #2/A:127@O 456.793 402.877 379.598
Atom #2/A:127@CB 458.686 400.326 379.074
Atom #2/A:127@CG 459.379 401.207 378.052
Atom #2/A:127@OD1 459.013 402.395 377.940
Atom #2/A:127@OD2 460.290 400.707 377.360
Atom #2/A:128@N 455.790 401.014 380.369
Atom #2/A:128@CA 454.454 401.575 380.206
Atom #2/A:128@C 454.231 402.745 381.152
Atom #2/A:128@O 453.399 403.620 380.887
Atom #2/A:128@CB 453.399 400.493 380.430
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Atom #2/A:268@N 441.291 394.825 388.416
Atom #2/A:268@CA 439.865 394.568 388.571
Atom #2/A:268@C 439.440 393.534 387.539
Atom #2/A:268@O 440.245 393.054 386.738
Atom #2/A:268@CB 439.044 395.853 388.423
Atom #2/A:268@OG1 437.650 395.551 388.566
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Atom #2/A:269@N 438.155 393.194 387.575
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Atom #2/A:269@C 437.066 392.890 385.399
Atom #2/A:269@O 436.901 394.111 385.334
Atom #2/A:269@CB 436.481 391.423 387.348
Atom #2/A:269@CG 436.958 390.156 388.031
Atom #2/A:269@CD 437.778 390.453 389.275
Atom #2/A:269@NE 436.982 391.077 390.325
Atom #2/A:269@CZ 436.222 390.410 391.183
Atom #2/A:269@NH1 436.137 389.090 391.149
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Atom #2/A:270@N 436.799 392.070 384.378
Atom #2/A:270@CA 436.258 392.597 383.129
Atom #2/A:270@C 434.875 393.198 383.338
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Atom #2/A:270@CB 436.201 391.495 382.071
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Atom #2/A:271@N 434.107 392.647 384.276
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Atom #2/A:271@CB 432.014 392.213 385.464
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Atom #2/A:272@N 433.819 394.868 385.938
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Atom #2/A:273@O 434.305 400.141 382.678
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Atom #2/A:273@CD1 437.296 395.757 381.474
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Atom #2/A:274@O 431.249 401.674 382.927
Atom #2/A:274@CB 430.415 398.477 382.787
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Atom #2/A:274@OE2 431.115 396.311 379.917
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Atom #2/A:275@C 432.826 402.569 385.625
Atom #2/A:275@O 432.802 403.800 385.529
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Atom #2/A:275@CD 429.940 403.602 387.523
Atom #2/A:275@CE 428.581 402.924 387.497
Atom #2/A:275@NZ 428.052 402.696 388.870
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Atom #2/A:276@O 436.381 404.401 384.884
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Atom #2/A:276@CD1 437.253 399.617 387.513
Atom #2/A:276@CD2 436.429 401.673 388.674
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Atom #2/A:277@O 435.580 406.097 381.517
Atom #2/A:277@CB 435.117 403.114 381.062
Atom #2/A:277@CG 433.620 402.877 380.994
Atom #2/A:277@CD 433.256 402.061 379.765
Atom #2/A:277@CE 431.785 401.685 379.767
Atom #2/A:277@NZ 430.912 402.889 379.724
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Atom #2/A:278@C 434.426 407.992 383.957
Atom #2/A:278@O 434.830 408.996 383.360
Atom #2/A:278@CB 432.183 406.927 383.789
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Atom #2/A:279@CA 435.322 408.810 386.057
Atom #2/A:279@C 436.801 408.958 385.717
Atom #2/A:279@O 437.350 410.065 385.758
Atom #2/A:279@CB 435.144 408.505 387.545
Atom #2/A:279@CG 435.416 407.061 387.929
Atom #2/A:279@SD 434.315 405.896 387.114
Atom #2/A:279@CE 432.876 405.989 388.174
Atom #2/A:280@N 437.462 407.856 385.390
Atom #2/A:280@CA 438.893 407.862 385.109
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Atom #2/A:280@O 438.493 408.337 382.781
Atom #2/A:280@CB 439.453 406.425 385.060
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Atom #2/A:280@CG2 439.150 405.698 386.357
Atom #2/A:281@N 440.089 409.529 383.829
Atom #2/A:281@CA 440.396 410.381 382.687
Atom #2/A:281@C 441.634 409.832 381.993
Atom #2/A:281@O 442.696 409.701 382.615
Atom #2/A:281@CB 440.606 411.840 383.118
Atom #2/A:281@CG1 440.769 412.733 381.898
Atom #2/A:281@CG2 439.445 412.312 383.980
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Atom #2/A:282@CA 442.569 409.020 379.850
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Atom #2/A:282@OG 442.961 411.169 378.791
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Atom #2/A:283@O 443.880 404.923 378.882
Atom #2/A:283@CB 442.117 404.734 381.770
Atom #2/A:283@CG 440.994 405.013 380.822
Atom #2/A:283@CD 441.229 406.401 380.250
Atom #2/A:284@N 444.690 403.638 380.548
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Atom #2/A:284@C 444.901 401.264 380.106
Atom #2/A:284@O 444.749 400.986 381.300
Atom #2/A:284@CB 446.855 402.774 379.720
Atom #2/A:284@CG 447.464 403.775 378.739
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Atom #2/A:284@CD2 447.232 405.200 379.201
Atom #2/A:285@N 444.701 400.393 379.124
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Atom #2/A:285@C 445.218 398.028 378.897
Atom #2/A:285@O 445.612 398.018 377.726
Atom #2/A:285@CB 442.870 398.837 378.617
Atom #2/A:285@CG 441.814 399.857 378.964
Atom #2/A:285@CD1 441.681 401.025 378.224
Atom #2/A:285@CD2 440.949 399.656 380.030
Atom #2/A:285@CE1 440.718 401.961 378.536
Atom #2/A:285@CE2 439.982 400.587 380.349
Atom #2/A:285@CZ 439.871 401.737 379.599
Atom #2/A:285@OH 438.908 402.668 379.913
Atom #2/A:286@N 445.651 397.175 379.821
Atom #2/A:286@CA 446.537 396.061 379.517
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Atom #2/A:286@O 445.768 394.719 381.347
Atom #2/A:286@CB 447.956 396.285 380.064
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Atom #2/A:286@CG2 448.875 395.196 379.598
Atom #2/A:286@CD1 449.807 398.012 380.246
Atom #2/A:287@N 445.547 393.856 379.273
Atom #2/A:287@CA 444.782 392.689 379.695
Atom #2/A:287@C 445.721 391.583 380.156
Atom #2/A:287@O 446.779 391.368 379.557
Atom #2/A:287@CB 443.877 392.195 378.564
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Atom #2/A:288@O 444.266 388.336 381.741
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Atom #2/A:288@CG1 447.068 388.922 383.978
Atom #2/A:288@CG2 446.935 391.397 383.632
Atom #2/A:289@N 446.270 387.543 381.064
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Atom #2/A:289@C 446.563 385.161 381.462
Atom #2/A:289@O 447.712 385.375 381.858
Atom #2/A:289@CB 445.863 385.979 379.196
Atom #2/A:289@CG 447.220 386.281 378.591
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Atom #2/A:289@OE1 446.785 388.609 378.828
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Atom #2/A:291@CD2 446.570 376.070 382.837
Atom #2/A:292@N 448.351 379.177 378.928
Atom #2/A:292@CA 448.379 379.150 377.476
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Atom #2/A:292@CB 449.809 378.991 376.964
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Atom #2/A:295@CB 450.289 375.012 378.954
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Atom #2/A:295@CD 451.756 373.399 380.176
Atom #2/A:295@NE 451.734 372.448 381.279
Atom #2/A:295@CZ 452.004 371.155 381.156
Atom #2/A:295@NH1 452.315 370.622 379.986
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Atom #2/A:296@N 447.243 374.258 378.470
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Atom #2/A:296@C 445.508 372.534 378.240
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Atom #2/A:296@NE 443.403 377.179 379.535
Atom #2/A:296@CZ 443.380 378.187 378.673
Atom #2/A:296@NH1 442.704 378.109 377.538
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Atom #2/A:297@N 445.740 372.459 376.928
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Atom #2/A:300@CG1 441.245 368.321 378.929
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Atom #2/A:301@O 445.202 363.306 378.784
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Atom #2/A:305@N 440.825 359.839 380.760
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Atom #2/A:307@O 436.827 354.844 376.443
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Atom #2/A:307@CG 439.209 353.210 379.516
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Atom #2/A:310@CB 440.620 359.873 374.761
Atom #2/A:310@CG 441.293 359.373 373.483
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Atom #2/A:310@NE 441.766 357.374 372.106
Atom #2/A:310@CZ 441.531 356.213 371.510
Atom #2/A:310@NH1 440.525 355.436 371.881
Atom #2/A:310@NH2 442.323 355.821 370.516
Atom #2/A:311@N 438.975 360.982 372.268
Atom #2/A:311@CA 438.966 361.943 371.171
Atom #2/A:311@C 437.706 362.797 371.224
Atom #2/A:311@O 437.767 364.031 371.228
Atom #2/A:311@CB 439.094 361.211 369.823
Atom #2/A:311@CG1 440.444 360.498 369.726
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Atom #2/A:311@CD1 441.620 361.367 370.100
Atom #2/A:312@N 436.546 362.144 371.309
Atom #2/A:312@CA 435.281 362.867 371.257
Atom #2/A:312@C 435.087 363.739 372.489
Atom #2/A:312@O 434.702 364.907 372.371
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Atom #2/A:312@CG 434.117 361.127 369.787
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Atom #2/A:312@OE1 435.575 359.528 370.813
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Atom #2/A:313@CA 435.158 363.954 374.905
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Atom #2/A:313@O 435.725 366.262 375.291
Atom #2/A:313@CB 435.314 363.040 376.133
Atom #2/A:313@CG1 435.358 363.865 377.408
Atom #2/A:313@CG2 434.179 362.031 376.187
Atom #2/A:314@N 437.390 364.903 374.625
Atom #2/A:314@CA 438.367 365.984 374.655
Atom #2/A:314@C 438.014 367.073 373.650
Atom #2/A:314@O 438.101 368.267 373.961
Atom #2/A:314@CB 439.765 365.427 374.386
Atom #2/A:314@CG 440.843 366.473 374.360
Atom #2/A:314@CD1 441.319 367.023 375.538
Atom #2/A:314@CD2 441.388 366.897 373.160
Atom #2/A:314@CE1 442.314 367.982 375.519
Atom #2/A:314@CE2 442.383 367.856 373.135
Atom #2/A:314@CZ 442.847 368.399 374.317
Atom #2/A:315@N 437.604 366.681 372.439
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Atom #2/A:315@C 435.981 368.445 371.859
Atom #2/A:315@O 435.905 369.655 371.628
Atom #2/A:315@CB 437.020 366.996 370.088
Atom #2/A:315@CG 438.300 366.645 369.397
Atom #2/A:315@ND1 438.459 365.494 368.658
Atom #2/A:315@CD2 439.487 367.295 369.339
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Atom #2/B:290@N 419.999 407.363 374.261
Atom #2/B:290@CA 421.206 407.788 374.956
Atom #2/B:290@C 420.864 408.961 375.863
Atom #2/B:290@O 420.249 409.936 375.418
Atom #2/B:290@CB 422.301 408.179 373.961
Atom #2/B:290@CG 423.129 407.047 373.341
Atom #2/B:290@CD1 422.297 406.176 372.416
Atom #2/B:290@CD2 424.315 407.617 372.591
Atom #2/B:291@N 421.264 408.866 377.128
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Atom #2/B:291@C 421.969 410.812 378.447
Atom #2/B:291@O 423.105 410.419 378.726
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Atom #2/B:291@CG 419.045 408.527 379.412
Atom #2/B:291@CD 418.661 407.963 380.768
Atom #2/B:291@CE 417.168 407.695 380.850
Atom #2/B:291@NZ 416.740 406.636 379.899
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Atom #2/B:292@CG 424.468 414.600 378.122
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Atom #2/B:292@CD2 425.138 414.627 379.299
Atom #2/B:292@CE1 426.138 416.026 377.939
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Atom #2/B:293@O 419.917 417.456 381.272
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Atom #2/B:294@N 421.815 417.246 380.093
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Atom #2/B:295@O 422.451 419.933 375.258
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Atom #2/B:295@CD1 418.621 420.483 373.461
Atom #2/B:295@CD2 419.236 422.775 374.260
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Atom #2/B:296@CD2 424.272 415.621 374.085
Atom #2/B:297@N 423.215 419.215 371.338
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Atom #2/B:297@O 422.986 419.598 367.843
Atom #2/B:297@CB 424.090 421.301 370.390
Atom #2/B:297@CG 423.478 422.468 371.172
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Atom #2/B:297@CD2 423.282 422.134 372.646
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Atom #2/B:298@CG1 426.592 418.130 365.674
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Atom #2/B:300@N 427.441 412.671 366.289
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Atom #2/B:300@C 428.172 410.608 365.246
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Atom #2/B:301@C 429.316 407.756 363.980
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Atom #2/B:301@CB 427.386 408.383 362.491
Atom #2/B:301@CG1 427.502 406.925 362.079
Atom #2/B:301@CG2 425.929 408.800 362.550
Atom #2/B:302@N 430.311 408.015 363.132
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Atom #2/B:302@OG 433.584 406.664 364.252
Atom #2/B:303@N 430.601 405.409 361.771
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Atom #2/B:303@O 431.056 401.864 361.838
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Atom #2/B:303@OG 429.032 402.640 359.895
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Atom #2/B:304@C 433.982 401.999 362.405
Atom #2/B:304@O 434.265 400.806 362.554
Atom #2/B:304@CB 434.766 403.199 360.338
Atom #2/B:304@CG 435.870 402.250 359.971
Atom #2/B:304@CD1 435.677 401.292 358.989
Atom #2/B:304@CD2 437.105 402.325 360.591
Atom #2/B:304@CE1 436.691 400.416 358.644
Atom #2/B:304@CE2 438.122 401.455 360.248
Atom #2/B:304@CZ 437.915 400.499 359.274
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Atom #2/B:305@O 433.409 401.785 366.819
Atom #2/B:305@CB 435.237 403.581 365.411
Atom #2/B:305@OG1 434.479 404.796 365.458
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Atom #2/B:306@N 431.977 402.306 365.159
Atom #2/B:306@CA 430.764 402.073 365.947
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Atom #2/B:306@O 430.305 402.482 368.277
Atom #2/B:306@CB 430.599 400.590 366.286
Atom #2/B:306@CG 430.992 399.647 365.166
Atom #2/B:306@CD 430.930 398.202 365.622
Atom #2/B:306@NE 432.054 397.851 366.481
Atom #2/B:306@CZ 432.392 396.610 366.799
Atom #2/B:306@NH1 431.710 395.570 366.349
Atom #2/B:306@NH2 433.441 396.406 367.590
Atom #2/B:307@N 431.254 404.151 367.111
Atom #2/B:307@CA 431.365 405.062 368.243
Atom #2/B:307@C 430.538 406.305 367.962
Atom #2/B:307@O 430.862 407.073 367.051
Atom #2/B:307@CB 432.824 405.443 368.500
Atom #2/B:307@CG 433.594 404.412 369.261
Atom #2/B:307@ND1 433.724 403.110 368.827
Atom #2/B:307@CD2 434.280 404.490 370.425
Atom #2/B:307@CE1 434.453 402.431 369.693
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Atom #2/B:308@CB 427.141 407.273 368.829
Atom #2/B:308@CG1 427.003 406.427 370.080
Atom #2/B:308@CG2 426.280 408.516 368.941
Atom #2/B:309@N 429.150 409.975 369.100
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Atom #2/B:309@O 427.609 412.321 369.066
Atom #2/B:309@CB 430.684 411.883 369.330
Atom #2/B:309@CG 431.811 410.999 368.882
Atom #2/B:309@CD1 432.815 410.637 369.760
Atom #2/B:309@CD2 431.868 410.532 367.580
Atom #2/B:309@CE1 433.853 409.824 369.350
Atom #2/B:309@CE2 432.904 409.717 367.166
Atom #2/B:309@CZ 433.896 409.364 368.052
Atom #2/B:310@N 428.047 412.516 371.270
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Atom #2/B:310@C 427.475 414.745 372.038
Atom #2/B:310@O 428.278 414.792 372.974
Atom #2/B:310@CB 425.998 412.810 372.604
Atom #2/B:310@OG1 426.732 412.554 373.808
Atom #2/B:310@CG2 425.400 411.514 372.095
Atom #2/B:311@N 427.028 415.825 371.405
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Atom #2/B:311@C 426.388 417.939 372.426
Atom #2/B:311@O 425.241 417.959 371.966
Atom #2/B:311@CB 427.909 417.906 370.438
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Atom #2/B:312@N 426.740 418.570 373.544
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Atom #2/B:312@C 426.421 420.719 374.607
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Atom #2/B:313@O 428.309 423.635 376.406
Atom #2/B:313@CB 425.032 423.751 376.217
Atom #2/B:313@CG 425.468 425.114 376.737
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Atom #2/B:313@OE1 425.564 424.094 378.900
Atom #2/B:313@NE2 426.065 426.278 378.774
Atom #2/B:314@N 427.332 421.966 377.552
Atom #2/B:314@CA 428.346 421.947 378.599
Atom #2/B:314@C 429.322 420.783 378.488
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Atom #2/B:316@O 431.579 414.230 376.972
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Atom #2/B:316@CG1 431.684 417.705 374.217
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Atom #2/B:316@CD1 430.400 418.238 373.636
Atom #2/B:317@N 430.112 413.448 375.448
Atom #2/B:317@CA 430.245 412.059 375.857
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Atom #2/B:317@O 429.940 411.508 373.537
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Atom #2/B:318@C 430.738 407.732 374.176
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Atom #2/B:318@CB 432.841 408.933 373.484
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Atom #2/B:319@N 430.049 407.080 373.243
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Atom #2/B:319@CB 427.825 406.048 373.557
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Atom #2/B:319@CD2 426.832 407.669 375.361
Atom #2/B:319@NE1 426.994 409.590 374.222
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Atom #2/B:319@CE3 426.504 406.883 376.468
Atom #2/B:319@CZ2 426.034 409.670 376.532
Atom #2/B:319@CZ3 425.953 407.496 377.577
Atom #2/B:319@CH2 425.724 408.877 377.600
Atom #2/B:320@N 429.617 403.537 372.831
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Atom #2/B:320@C 428.544 401.641 371.748
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Atom #2/B:320@CB 430.938 401.492 372.458
Atom #2/B:320@CG 431.394 400.478 371.428
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Atom #2/B:321@N 428.335 401.119 370.539
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Atom #2/B:321@O 426.321 398.214 369.776
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Atom #2/B:322@N 428.328 398.401 370.770
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Atom #2/B:322@CB 429.975 396.612 371.146
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Atom #2/B:324@C 422.272 396.142 375.398
Atom #2/B:324@O 422.449 395.483 376.429
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Atom #2/B:324@CG 422.657 393.970 372.214
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Atom #2/B:324@OE1 424.528 392.747 373.059
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Atom #2/B:325@CG1 422.398 399.763 376.780
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Atom #2/B:326@N 418.671 398.753 376.872
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Atom #2/B:326@C 417.969 401.103 376.754
Atom #2/B:326@O 417.952 401.902 375.812
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Atom #2/B:327@N 418.342 401.462 377.978
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Atom #2/B:327@C 420.234 402.810 378.652
Atom #2/B:327@O 420.677 402.043 379.514
Atom #2/B:327@CB 417.938 403.353 379.498
Atom #2/B:327@CG 416.430 403.352 379.285
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Atom #2/B:327@OE1 415.987 403.632 376.961
Atom #2/B:327@OE2 415.665 405.362 378.273
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Atom #2/B:328@C 422.646 405.100 379.011
Atom #2/B:328@O 422.306 406.190 378.540
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Atom #2/B:328@CG 424.425 402.917 376.965
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Atom #2/B:328@OD2 425.379 403.148 376.192
Atom #2/B:329@N 423.207 404.963 380.214
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Atom #2/B:329@C 425.021 406.265 381.297
Atom #2/B:329@O 425.469 407.388 381.552
Atom #2/B:329@CB 422.814 405.966 382.416
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Atom #2/B:329@CD 422.158 408.350 382.763
Atom #2/B:329@NE 422.197 409.510 383.644
Atom #2/B:329@CZ 421.716 410.705 383.328
Atom #2/B:329@NH1 421.149 410.933 382.155
Atom #2/B:329@NH2 421.807 411.695 384.212
Atom #2/B:330@N 425.799 405.185 381.201
Atom #2/B:330@CA 427.231 405.240 381.448
Atom #2/B:330@C 427.974 405.297 380.122
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Atom #2/B:330@CG 427.033 403.959 383.619
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Atom #2/B:331@N 428.609 406.411 379.779
Atom #2/B:331@CA 429.367 406.475 378.529
Atom #2/B:331@C 430.746 405.852 378.679
Atom #2/B:331@O 431.263 405.667 379.782
Atom #2/B:331@CB 429.472 407.980 378.256
Atom #2/B:331@CG 429.366 408.623 379.608
Atom #2/B:331@CD 428.726 407.650 380.567
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Atom #2/B:332@CA 432.686 404.965 377.544
Atom #2/B:332@C 433.723 406.033 377.869
Atom #2/B:332@O 434.712 405.755 378.555
Atom #2/B:332@CB 432.998 404.303 376.204
Atom #2/B:332@CG 434.230 403.419 376.235
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Atom #2/B:332@OE1 433.472 402.635 374.124
Atom #2/B:332@OE2 435.280 401.712 374.957
Atom #2/B:333@N 433.515 407.257 377.385
Atom #2/B:333@CA 434.405 408.371 377.676
Atom #2/B:333@C 433.580 409.633 377.873
Atom #2/B:333@O 432.588 409.850 377.173
Atom #2/B:333@CB 435.430 408.583 376.554
Atom #2/B:333@OG 436.526 409.357 377.008
Atom #2/B:334@N 433.993 410.458 378.831
Atom #2/B:334@CA 433.324 411.716 379.135
Atom #2/B:334@C 434.340 412.843 379.029
Atom #2/B:334@O 435.367 412.822 379.716
Atom #2/B:334@CB 432.695 411.674 380.528
Atom #2/B:334@CG 432.074 412.967 380.954
Atom #2/B:334@ND1 431.033 413.553 380.267
Atom #2/B:334@CD2 432.335 413.777 382.006
Atom #2/B:334@CE1 430.685 414.674 380.873
Atom #2/B:334@NE2 431.457 414.831 381.932
Atom #2/B:335@N 434.054 413.821 378.171
Atom #2/B:335@CA 434.976 414.915 377.889
Atom #2/B:335@C 434.259 416.237 378.111
Atom #2/B:335@O 433.207 416.482 377.512
Atom #2/B:335@CB 435.508 414.832 376.454
Atom #2/B:335@CG 436.504 413.719 376.120
Atom #2/B:335@CD1 435.796 412.399 375.854
Atom #2/B:335@CD2 437.360 414.115 374.930
Atom #2/B:336@N 434.831 417.088 378.959
Atom #2/B:336@CA 434.286 418.409 379.235
Atom #2/B:336@C 435.349 419.468 378.986
Atom #2/B:336@O 436.511 419.297 379.366
Atom #2/B:336@CB 433.781 418.522 380.675
Atom #2/B:336@CG 432.564 417.677 380.980
Atom #2/B:336@CD 431.946 418.069 382.312
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Atom #2/B:386@C 439.594 433.228 369.484
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Atom #2/B:387@O 437.717 435.494 371.888
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Atom #2/B:387@CG 440.728 436.387 373.147
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Atom #2/B:387@OE1 440.977 438.578 372.249
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Atom #2/B:389@O 435.726 433.087 368.665
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Atom #2/B:399@OE1 440.147 419.977 350.194
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Atom #2/B:401@O 440.606 422.166 356.403
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Atom #2/B:401@CG 442.392 424.793 354.511
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Atom #2/B:402@N 441.743 423.724 357.565
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Atom #2/B:406@CE1 435.791 431.070 364.777
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Atom #2/B:406@CZ 436.824 431.285 363.891
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Atom #2/B:410@OG1 435.613 438.822 361.236
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Atom #2/B:411@C 438.124 433.437 358.693
Atom #2/B:411@O 438.778 434.049 357.840
Atom #2/B:411@CB 435.991 432.987 357.415
Atom #2/B:411@CG1 436.593 431.643 357.060
Atom #2/B:411@CG2 434.473 432.878 357.547
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Atom #2/B:412@O 439.743 430.162 360.059
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Atom #2/B:412@NE 441.848 433.364 363.794
Atom #2/B:412@CZ 442.427 432.588 364.701
Atom #2/B:412@NH1 441.734 431.712 365.407
Atom #2/B:412@NH2 443.738 432.691 364.900
Atom #2/B:413@N 441.620 430.770 358.949
Atom #2/B:413@CA 441.916 429.503 358.295
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Atom #2/B:414@NE1 443.189 429.921 363.166
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Atom #2/B:414@CE3 441.385 427.124 361.921
Atom #2/B:414@CZ2 440.745 429.437 363.408
Atom #2/B:414@CZ3 440.094 427.375 362.341
Atom #2/B:414@CH2 439.785 428.523 363.076
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Atom #2/B:415@O 448.060 423.949 360.675
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Atom #2/B:416@N 446.634 422.361 359.926
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Atom #2/B:416@O 448.762 420.954 362.376
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Atom #2/B:417@NE 450.657 417.036 359.023
Atom #2/B:417@CZ 450.377 416.526 357.832
Atom #2/B:417@NH1 451.270 416.516 356.856
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Atom #2/B:418@N 451.069 422.483 360.517
Atom #2/B:418@CA 451.986 423.520 360.962
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Atom #2/B:419@O 450.144 427.603 363.636
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Atom #2/B:420@O 447.641 428.545 359.751
Atom #2/B:420@CB 450.813 428.926 360.287
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Atom #2/B:421@O 448.552 432.190 358.239
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Atom #2/B:421@CG1 446.271 432.259 362.038
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Atom #2/B:421@CD1 446.217 433.496 362.902
Atom #2/B:422@N 446.768 431.052 357.464
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Atom #2/B:422@O 446.710 432.790 354.367
Atom #2/B:422@CB 447.170 429.766 355.393
Atom #2/B:422@CG1 445.807 429.114 355.462
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Atom #2/B:423@C 442.969 433.598 355.880
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Atom #2/B:423@CG 442.195 432.897 353.161
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Atom #2/B:423@NE 442.807 431.498 351.237
Atom #2/B:423@CZ 443.494 432.183 350.333
Atom #2/B:423@NH1 443.189 433.436 350.036
Atom #2/B:423@NH2 444.513 431.597 349.712
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Atom #2/B:425@O 436.923 436.936 357.003
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Atom #2/B:426@CG 435.699 441.647 356.931
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Atom #2/B:430@O 425.058 435.732 359.242
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Atom #2/B:433@NH1 425.820 435.661 363.619
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Atom #2/F:85@ND2 349.963 465.066 276.006
Atom #2/F:86@N 353.292 460.807 273.606
Atom #2/F:86@CA 353.957 459.517 273.690
Atom #2/F:86@C 355.261 459.548 272.903
Atom #2/F:86@O 355.352 460.173 271.843
Atom #2/F:86@CB 353.056 458.396 273.160
Atom #2/F:86@CG 353.219 457.019 273.807
Atom #2/F:86@CD1 353.197 457.124 275.324
Atom #2/F:86@CD2 352.139 456.067 273.315
Atom #2/F:87@N 356.273 458.865 273.435
Atom #2/F:87@CA 357.578 458.780 272.795
Atom #2/F:87@C 358.060 457.338 272.825
Atom #2/F:87@O 357.606 456.525 273.635
Atom #2/F:87@CB 358.606 459.695 273.472
Atom #2/F:88@N 358.991 457.026 271.927
Atom #2/F:88@CA 359.537 455.684 271.804
Atom #2/F:88@C 361.056 455.731 271.890
Atom #2/F:88@O 361.687 456.732 271.540
Atom #2/F:88@CB 359.108 455.017 270.490
Atom #2/F:88@CG 359.759 455.593 269.245
Atom #2/F:88@CD 359.342 454.861 267.985
Atom #2/F:88@OE1 358.438 454.003 268.068
Atom #2/F:88@OE2 359.921 455.140 266.915
Atom #2/F:89@N 361.634 454.633 272.371
Atom #2/F:89@CA 363.075 454.496 272.525
Atom #2/F:89@C 363.522 453.227 271.815
Atom #2/F:89@O 362.789 452.235 271.756
Atom #2/F:89@CB 363.494 454.471 274.012
Atom #2/F:89@CG1 362.948 453.221 274.702
Atom #2/F:89@CG2 363.005 455.718 274.726
Atom #2/F:89@CD1 363.228 453.178 276.183
Atom #2/F:90@N 364.728 453.271 271.253
Atom #2/F:90@CA 365.310 452.136 270.546
Atom #2/F:90@C 366.622 451.757 271.216
Atom #2/F:90@O 367.510 452.602 271.369
Atom #2/F:90@CB 365.537 452.460 269.069
Atom #2/F:90@OG1 366.737 453.229 268.929
Atom #2/F:90@CG2 364.367 453.253 268.510
Atom #2/F:91@N 366.740 450.493 271.612
Atom #2/F:91@CA 367.932 449.972 272.271
Atom #2/F:91@C 368.344 448.686 271.568
Atom #2/F:91@O 367.498 447.830 271.287
Atom #2/F:91@CB 367.694 449.720 273.772
Atom #2/F:91@CG1 367.143 450.977 274.444
Atom #2/F:91@CG2 368.984 449.300 274.449
Atom #2/F:91@CD1 366.598 450.736 275.829
Atom #2/F:92@N 369.636 448.553 271.280
Atom #2/F:92@CA 370.167 447.412 270.548
Atom #2/F:92@C 371.252 446.736 271.375
Atom #2/F:92@O 372.101 447.413 271.963
Atom #2/F:92@CB 370.758 447.845 269.206
Atom #2/F:92@CG 369.802 448.608 268.336
Atom #2/F:92@CD1 369.696 449.983 268.451
Atom #2/F:92@CD2 369.008 447.960 267.412
Atom #2/F:92@CE1 368.823 450.695 267.656
Atom #2/F:92@CE2 368.134 448.671 266.615
Atom #2/F:92@CZ 368.039 450.038 266.740
Atom #2/F:93@N 371.236 445.409 271.414
Atom #2/F:93@CA 372.308 444.693 272.073
Atom #2/F:93@C 371.879 443.305 272.502
Atom #2/F:93@O 370.778 442.844 272.196
Atom #2/F:94@N 372.791 442.649 273.216
Atom #2/F:94@CA 372.544 441.327 273.764
Atom #2/F:94@C 371.464 441.405 274.846
Atom #2/F:94@O 371.331 442.427 275.522
Atom #2/F:94@CB 373.845 440.761 274.336
Atom #2/F:94@CG 373.756 439.401 275.010
Atom #2/F:94@CD 374.957 439.103 275.883
Atom #2/F:94@OE1 375.853 439.934 276.031
Atom #2/F:94@NE2 374.983 437.911 276.466
Atom #2/F:95@N 370.669 440.342 275.016
Atom #2/F:95@CA 369.595 440.380 276.024
Atom #2/F:95@C 370.048 440.803 277.409
Atom #2/F:95@O 369.295 441.493 278.109
Atom #2/F:95@CB 369.084 438.936 276.023
Atom #2/F:95@CG 369.277 438.492 274.620
Atom #2/F:95@CD 370.503 439.204 274.093
Atom #2/F:96@N 371.249 440.415 277.834
Atom #2/F:96@CA 371.754 440.881 279.118
Atom #2/F:96@C 372.044 442.376 279.107
Atom #2/F:96@O 371.839 443.049 280.123
Atom #2/F:96@CB 373.012 440.104 279.506
Atom #2/F:96@OG 372.707 438.745 279.765
Atom #2/F:97@N 372.522 442.910 277.983
Atom #2/F:97@CA 372.814 444.336 277.897
Atom #2/F:97@C 371.553 445.175 277.743
Atom #2/F:97@O 371.503 446.305 278.241
Atom #2/F:97@CB 373.770 444.611 276.735
Atom #2/F:98@N 370.533 444.652 277.056
Atom #2/F:98@CA 369.285 445.393 276.908
Atom #2/F:98@C 368.599 445.585 278.254
Atom #2/F:98@O 367.987 446.628 278.507
Atom #2/F:98@CB 368.359 444.670 275.932
Atom #2/F:98@CG 368.715 444.883 274.473
Atom #2/F:98@CD 367.805 444.118 273.534
Atom #2/F:98@OE1 367.265 443.071 273.890
Atom #2/F:98@NE2 367.635 444.636 272.323
Atom #2/F:99@N 368.687 444.581 279.127
Atom #2/F:99@CA 368.102 444.692 280.458
Atom #2/F:99@C 368.738 445.825 281.250
Atom #2/F:99@O 368.038 446.589 281.925
Atom #2/F:99@CB 368.264 443.370 281.204
Atom #2/F:99@OG1 367.377 442.393 280.645
Atom #2/F:99@CG2 367.963 443.547 282.683
Atom #2/F:100@N 370.064 445.953 281.175
Atom #2/F:100@CA 370.765 446.926 282.006
Atom #2/F:100@C 370.311 448.348 281.709
Atom #2/F:100@O 370.066 449.133 282.632
Atom #2/F:100@CB 372.273 446.798 281.796
Atom #2/F:100@CG 373.106 447.516 282.841
Atom #2/F:100@CD 373.033 446.805 284.189
Atom #2/F:100@NE 373.307 445.370 284.134
Atom #2/F:100@CZ 374.360 444.797 283.560
Atom #2/F:100@NH1 375.344 445.510 283.035
Atom #2/F:100@NH2 374.439 443.470 283.534
Atom #2/F:101@N 370.187 448.700 280.429
Atom #2/F:101@CA 369.823 450.068 280.075
Atom #2/F:101@C 368.377 450.371 280.445
Atom #2/F:101@O 368.068 451.477 280.908
Atom #2/F:101@CB 370.058 450.302 278.584
Atom #2/F:101@CG 371.487 450.677 278.250
Atom #2/F:101@SD 371.843 452.428 278.470
Atom #2/F:101@CE 371.598 453.020 276.801
Atom #2/F:102@N 367.477 449.407 280.246
Atom #2/F:102@CA 366.072 449.633 280.566
Atom #2/F:102@C 365.880 449.880 282.057
Atom #2/F:102@O 365.105 450.758 282.451
Atom #2/F:102@CB 365.232 448.447 280.094
Atom #2/F:102@CG 364.049 448.119 280.983
Atom #2/F:102@CD 363.343 446.862 280.512
Atom #2/F:102@CE 364.083 445.617 280.957
Atom #2/F:102@NZ 364.600 445.752 282.342
Atom #2/F:103@N 366.585 449.123 282.901
Atom #2/F:103@CA 366.462 449.314 284.343
Atom #2/F:103@C 366.944 450.694 284.766
Atom #2/F:103@O 366.298 451.360 285.583
Atom #2/F:103@CB 367.235 448.228 285.086
Atom #2/F:103@CG 366.755 446.836 284.744
Atom #2/F:103@OD1 365.811 446.668 283.975
Atom #2/F:103@ND2 367.404 445.828 285.314
Atom #2/F:104@N 368.078 451.142 284.227
Atom #2/F:104@CA 368.595 452.459 284.586
Atom #2/F:104@C 367.681 453.555 284.054
Atom #2/F:104@O 367.397 454.539 284.746
Atom #2/F:104@CB 370.039 452.630 284.081
Atom #2/F:104@CG1 370.917 451.464 284.544
Atom #2/F:104@CG2 370.615 453.960 284.546
Atom #2/F:104@CD1 370.747 451.096 286.006
Atom #2/F:105@N 367.206 453.402 282.816
Atom #2/F:105@CA 366.356 454.428 282.224
Atom #2/F:105@C 365.051 454.579 282.996
Atom #2/F:105@O 364.587 455.702 283.228
Atom #2/F:105@CB 366.077 454.098 280.760
Atom #2/F:105@CG 365.894 455.309 279.846
Atom #2/F:105@CD1 367.176 456.122 279.796
Atom #2/F:105@CD2 365.481 454.878 278.453
Atom #2/F:106@N 364.446 453.460 283.401
Atom #2/F:106@CA 363.235 453.529 284.211
Atom #2/F:106@C 363.520 454.158 285.567
Atom #2/F:106@O 362.699 454.920 286.091
Atom #2/F:106@CB 362.635 452.135 284.384
Atom #2/F:106@CG 362.055 451.475 283.133
Atom #2/F:106@CD1 361.594 450.064 283.449
Atom #2/F:106@CD2 360.914 452.299 282.565
Atom #2/F:107@N 364.677 453.844 286.153
Atom #2/F:107@CA 365.033 454.419 287.444
Atom #2/F:107@C 365.162 455.932 287.356
Atom #2/F:107@O 364.689 456.655 288.240
Atom #2/F:107@CB 366.333 453.800 287.953
Atom #2/F:107@CG 366.108 452.481 288.659
Atom #2/F:107@OD1 365.055 451.861 288.515
Atom #2/F:107@ND2 367.096 452.047 289.430
Atom #2/F:108@N 365.800 456.431 286.298
Atom #2/F:108@CA 365.891 457.875 286.117
Atom #2/F:108@C 364.522 458.477 285.833
Atom #2/F:108@O 364.231 459.601 286.260
Atom #2/F:108@CB 366.873 458.203 284.994
Atom #2/F:108@CG 368.337 458.389 285.420
Atom #2/F:108@SD 368.654 459.139 287.039
Atom #2/F:108@CE 368.624 457.730 288.153
Atom #2/F:109@N 363.668 457.743 285.116
Atom #2/F:109@CA 362.302 458.203 284.900
Atom #2/F:109@C 361.548 458.313 286.218
Atom #2/F:109@O 360.787 459.263 286.432
Atom #2/F:109@CB 361.573 457.265 283.940
Atom #2/F:110@N 361.746 457.344 287.115
Atom #2/F:110@CA 361.131 457.421 288.436
Atom #2/F:110@C 361.647 458.625 289.212
Atom #2/F:110@O 360.884 459.287 289.925
Atom #2/F:110@CB 361.389 456.130 289.211
Atom #2/F:111@N 362.942 458.921 289.088
Atom #2/F:111@CA 363.509 460.073 289.782
Atom #2/F:111@C 362.885 461.376 289.298
Atom #2/F:111@O 362.606 462.273 290.101
Atom #2/F:111@CB 365.026 460.103 289.596
Atom #2/F:111@CG 365.692 461.266 290.268
Atom #2/F:111@CD1 366.273 461.274 291.500
Atom #2/F:111@CD2 365.854 462.589 289.739
Atom #2/F:111@NE1 366.783 462.520 291.777
Atom #2/F:111@CE2 366.538 463.345 290.711
Atom #2/F:111@CE3 365.486 463.207 288.540
Atom #2/F:111@CZ2 366.861 464.686 290.521
Atom #2/F:111@CZ3 365.807 464.538 288.355
Atom #2/F:111@CH2 366.487 465.263 289.339
Atom #2/F:112@N 362.669 461.503 287.987
Atom #2/F:112@CA 362.145 462.750 287.441
Atom #2/F:112@C 360.731 463.050 287.918
Atom #2/F:112@O 360.296 464.204 287.842
Atom #2/F:112@CB 362.187 462.715 285.914
Atom #2/F:112@CG 363.391 463.387 285.331
Atom #2/F:112@ND1 363.662 464.725 285.522
Atom #2/F:112@CD2 364.398 462.906 284.565
Atom #2/F:112@CE1 364.782 465.040 284.897
Atom #2/F:112@NE2 365.249 463.954 284.307
Atom #2/F:113@N 360.002 462.041 288.401
Atom #2/F:113@CA 358.670 462.289 288.941
Atom #2/F:113@C 358.733 463.187 290.171
Atom #2/F:113@O 357.898 464.082 290.339
Atom #2/F:113@CB 357.981 460.963 289.273
Atom #2/F:113@CG 357.857 459.929 288.126
Atom #2/F:113@CD 357.735 460.474 286.686
Atom #2/F:113@CE 356.626 461.516 286.497
Atom #2/F:113@NZ 356.659 462.124 285.139
Atom #2/F:114@N 359.716 462.965 291.036
Atom #2/F:114@CA 359.900 463.800 292.216
Atom #2/F:114@C 360.892 464.923 291.933
Atom #2/F:114@O 360.860 465.972 292.576
Atom #2/F:114@CB 360.378 462.958 293.400
Atom #2/F:114@CG 361.877 462.719 293.425
Atom #2/F:114@CD 362.248 461.319 292.978
Atom #2/F:114@OE1 361.398 460.649 292.356
Atom #2/F:114@OE2 363.390 460.889 293.245
> ui mousemode right select
> select clear
> hide #!1 models
> select #23/A:816
8 atoms, 7 bonds, 1 residue, 1 model selected
> getcrd sel
Atom #23/A:816@N 343.123 327.121 191.453
Atom #23/A:816@CA 343.335 328.572 191.399
Atom #23/A:816@C 343.544 329.199 192.785
Atom #23/A:816@CB 342.142 329.243 190.695
Atom #23/A:816@O 344.392 330.079 192.934
Atom #23/A:816@CG 342.107 329.028 189.193
Atom #23/A:816@ND2 340.971 329.252 188.577
Atom #23/A:816@OD1 343.080 328.689 188.542
> getcrd sel
Atom #23/A:816@N 343.123 327.121 191.453
Atom #23/A:816@CA 343.335 328.572 191.399
Atom #23/A:816@C 343.544 329.199 192.785
Atom #23/A:816@CB 342.142 329.243 190.695
Atom #23/A:816@O 344.392 330.079 192.934
Atom #23/A:816@CG 342.107 329.028 189.193
Atom #23/A:816@ND2 340.971 329.252 188.577
Atom #23/A:816@OD1 343.080 328.689 188.542
> getcrd sel
Atom #23/A:816@N 343.123 327.121 191.453
Atom #23/A:816@CA 343.335 328.572 191.399
Atom #23/A:816@C 343.544 329.199 192.785
Atom #23/A:816@CB 342.142 329.243 190.695
Atom #23/A:816@O 344.392 330.079 192.934
Atom #23/A:816@CG 342.107 329.028 189.193
Atom #23/A:816@ND2 340.971 329.252 188.577
Atom #23/A:816@OD1 343.080 328.689 188.542
> select clear
> select #23/A:816
8 atoms, 7 bonds, 1 residue, 1 model selected
> getcrd sel
Atom #23/A:816@N 343.123 327.121 191.453
Atom #23/A:816@CA 343.335 328.572 191.399
Atom #23/A:816@C 343.544 329.199 192.785
Atom #23/A:816@CB 342.142 329.243 190.695
Atom #23/A:816@O 344.392 330.079 192.934
Atom #23/A:816@CG 342.107 329.028 189.193
Atom #23/A:816@ND2 340.971 329.252 188.577
Atom #23/A:816@OD1 343.080 328.689 188.542
> getcrd sel
Atom #23/A:816@N 343.123 327.121 191.453
Atom #23/A:816@CA 343.335 328.572 191.399
Atom #23/A:816@C 343.544 329.199 192.785
Atom #23/A:816@CB 342.142 329.243 190.695
Atom #23/A:816@O 344.392 330.079 192.934
Atom #23/A:816@CG 342.107 329.028 189.193
Atom #23/A:816@ND2 340.971 329.252 188.577
Atom #23/A:816@OD1 343.080 328.689 188.542
> getcrd sel
Atom #23/A:816@N 343.123 327.121 191.453
Atom #23/A:816@CA 343.335 328.572 191.399
Atom #23/A:816@C 343.544 329.199 192.785
Atom #23/A:816@CB 342.142 329.243 190.695
Atom #23/A:816@O 344.392 330.079 192.934
Atom #23/A:816@CG 342.107 329.028 189.193
Atom #23/A:816@ND2 340.971 329.252 188.577
Atom #23/A:816@OD1 343.080 328.689 188.542
Drag select of 1128 residues, 1 pseudobonds, 7 atoms, 7 bonds, 20
MmCPLs_UNK2.mrc
> select #15/B:523
9 atoms, 8 bonds, 1 residue, 1 model selected
> select clear
> select #2/D:972
5 atoms, 4 bonds, 1 residue, 1 model selected
> select clear
> select #2/C:113
9 atoms, 8 bonds, 1 residue, 1 model selected
> getcrd sel
Atom #2/C:113@N 455.200 379.495 351.071
Atom #2/C:113@CA 455.501 378.138 350.615
Atom #2/C:113@C 455.991 378.098 349.173
Atom #2/C:113@O 456.642 377.122 348.784
Atom #2/C:113@CB 454.289 377.213 350.754
Atom #2/C:113@CG 452.939 377.881 350.646
Atom #2/C:113@CD 451.825 376.891 350.955
Atom #2/C:113@CE 451.563 376.778 352.448
Atom #2/C:113@NZ 451.053 378.047 353.031
> ui mousemode right translate
> getcrd sel
Atom #2/C:113@N 455.200 379.495 351.071
Atom #2/C:113@CA 455.501 378.138 350.615
Atom #2/C:113@C 455.991 378.098 349.173
Atom #2/C:113@O 456.642 377.122 348.784
Atom #2/C:113@CB 454.289 377.213 350.754
Atom #2/C:113@CG 452.939 377.881 350.646
Atom #2/C:113@CD 451.825 376.891 350.955
Atom #2/C:113@CE 451.563 376.778 352.448
Atom #2/C:113@NZ 451.053 378.047 353.031
> open /Users/z.kilic/Downloads/MmCPLs_playground.cxs
Opened cryosparc_P105_J104_004_volume_map_deepEM_tight.mrc as #1, grid size
300,300,300, pixel 2.12, shown at level 0.0305, step 1, values float32
Opened MmCPLs_UNK4.mrc as #7, grid size 32,32,38, pixel 2.12,2.12,2.12, shown
at level 0.159, step 1, values float32
Opened MmCPLs_UNK1.mrc as #16, grid size 32,32,32, pixel 2.12, shown at level
0.193, step 1, values float32
Opened MmCPLs_UNK2.mrc as #20, grid size 34,34,34, pixel 2.12, shown at level
0.226, step 1, values float32
opened ChimeraX session
> view name front
> ui mousemode right select
> ui mousemode right rotate
> ui mousemode right translate
> ui mousemode right zoom
> ui mousemode right translate
> ui mousemode right rotate
> view front
> hide #4-6,8-13,15,17-19,21-23#!3,7,14,16,20 target m
> hide #!1 models
> select #2/A
7481 atoms, 7613 bonds, 1 pseudobond, 949 residues, 2 models selected
> color #2/A #7B435B
> color #14/A #7B435B
> color #2/A #7B435B
> color #14/A #7B435B
> select add #14
29672 atoms, 30234 bonds, 5 pseudobonds, 3759 residues, 4 models selected
> show #!14 models
> select subtract #14
7481 atoms, 7613 bonds, 1 pseudobond, 949 residues, 2 models selected
> color #2/D #7B435B
> color #14/D #7B435B
> color #2/B #EF767A
> color #2/E #EF767A
> color #2/B #EEB868
> color #2/E #EEB868
> color #14/B #EEB868
> color #14/E #EEB868
> select #2/C
719 atoms, 736 bonds, 89 residues, 1 model selected
> color #2/C #44633F
> color #2/F #44633F
> color #2/C #49BEAA
> color #2/F #49BEAA
> color #14/C #49BEAA
> color #14/F #49BEAA
> show #!1 models
> select #2/A
7481 atoms, 7613 bonds, 1 pseudobond, 949 residues, 2 models selected
> color zone #1 near #2/A distance 5 color #7B435B
Expected a keyword
> color zone #1 near #2/A distance 5 #7B435B
Expected a keyword
> color zone #1 near #2/A distance 5 color #7B435B
Expected a keyword
> select add #1
7481 atoms, 7613 bonds, 1 pseudobond, 949 residues, 4 models selected
> color zone #1 near #2/A distance 5 color #7B435B
Expected a keyword
> select subtract #1
7481 atoms, 7613 bonds, 1 pseudobond, 949 residues, 2 models selected
> color zone #1 near #2/A distance 5 color "#7B435B"
Expected a keyword
> color zone #1 near #2/A distance 5 color quinacridone magenta
Expected a keyword
> color zone #1 near #2/A distance 5 quinacridone magenta
Expected a keyword
> color zone #1 near #2/A range 5 quinacridone magenta
Expected a keyword
> color zone #1 near #2/A distance 5 red
Expected a keyword
> color volume zone #1 near #2/A distance 5 red
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword
> color volume zone #1 near #2/A distance 5 color #7B435B
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword
> color volume zone #1 near sel distance 5 red
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword
> color zone #1 near sel distance 5 red
Expected a keyword
> Color Zone #1 near sel distance 5 red
Unknown command: Color Zone #1 near sel distance 5 red
> ui tool show "Color Zone"
> color zone #1 near #2 distance 12.72
> color zone #1 near #2 distance 5
> view front
> color zone #1 near #14 distance 5
> color surface #1 near #2 distance 5
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword
> color surface #1 near #2 radius 5
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword
> lighting soft
> lighting simple
> lighting soft
> color zone #1
Missing required "near" argument
> color zone #1 near #2,14
> color zone #1 near #2,14 distance 5
> hide #!2 models
> hide #!1 models
> hide #2.1 models
> show #!3 models
> open /Users/z.kilic/Desktop/Chimeraimages/listed.cxs
Opened cryosparc_P105_J104_004_volume_map_deepEM_tight.mrc as #1, grid size
300,300,300, pixel 2.12, shown at level 0.0305, step 1, values float32
Opened MmCPLs_UNK4.mrc as #7, grid size 32,32,38, pixel 2.12,2.12,2.12, shown
at level 0.159, step 1, values float32
Opened MmCPLs_UNK1.mrc as #16, grid size 32,32,32, pixel 2.12, shown at level
0.193, step 1, values float32
Opened MmCPLs_UNK2.mrc as #20, grid size 34,34,34, pixel 2.12, shown at level
0.226, step 1, values float32
opened ChimeraX session
> open /Users/z.kilic/Desktop/Chimeraimages/TLE6_1.pdb
Summary of feedback from opening
/Users/z.kilic/Desktop/Chimeraimages/TLE6_1.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 ASP A 97 PHE A 109 1 13
Start residue of secondary structure not found: HELIX 2 2 SER A 119 PHE A 129
1 11
Start residue of secondary structure not found: HELIX 3 3 GLY A 150 GLY A 165
1 16
Start residue of secondary structure not found: HELIX 4 4 ARG A 180 ILE A 182
1 3
Start residue of secondary structure not found: HELIX 5 5 SER A 189 CYS A 198
1 10
170 messages similar to the above omitted
Chain information for TLE6_1.pdb #24
---
Chain | Description
B | No description available
> open /Users/z.kilic/Desktop/Chimeraimages/TLE6_1.pdb
Summary of feedback from opening
/Users/z.kilic/Desktop/Chimeraimages/TLE6_1.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 ASP A 97 PHE A 109 1 13
Start residue of secondary structure not found: HELIX 2 2 SER A 119 PHE A 129
1 11
Start residue of secondary structure not found: HELIX 3 3 GLY A 150 GLY A 165
1 16
Start residue of secondary structure not found: HELIX 4 4 ARG A 180 ILE A 182
1 3
Start residue of secondary structure not found: HELIX 5 5 SER A 189 CYS A 198
1 10
170 messages similar to the above omitted
Chain information for TLE6_1.pdb #25
---
Chain | Description
B | No description available
> open /Users/z.kilic/Downloads/MmCPLs_playground.cxs format session
Opened cryosparc_P105_J104_004_volume_map_deepEM_tight.mrc as #1, grid size
300,300,300, pixel 2.12, shown at level 0.0305, step 1, values float32
Opened MmCPLs_UNK4.mrc as #7, grid size 32,32,38, pixel 2.12,2.12,2.12, shown
at level 0.159, step 1, values float32
Opened MmCPLs_UNK1.mrc as #16, grid size 32,32,32, pixel 2.12, shown at level
0.193, step 1, values float32
Opened MmCPLs_UNK2.mrc as #20, grid size 34,34,34, pixel 2.12, shown at level
0.226, step 1, values float32
opened ChimeraX session
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> select add #3
22389 atoms, 22878 bonds, 16 pseudobonds, 2835 residues, 2 models selected
> show #!3 models
> close #3
> hide #4-6,8-13,15,17-19,21-23#!2,7,14,16,20 target m
> hide #!1 models
> show #4 models
> hide #4 models
> show #!2 models
> color 2/A #E76D83
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword
> color #2/A #E76D83
> color #2/D #E76D83
> select #2/C
719 atoms, 736 bonds, 89 residues, 1 model selected
> color #2/B #9CC4B2
> color #2/E #9CC4B2
> color #14/B #9CC4B2
> color #14/E #9CC4B2
> color #2/C #D8BFD8
> color #2/F #D8BFD8
> color #14/C #D8BFD8
> color #14/F #D8BFD8
> color #14/A #E76D83
> color #14/D #E76D83
> show #!14 models
> show #!1 models
> view name front
> show #4 models
> show #5 models
> show #6 models
> hide #6 models
> show #6 models
> hide #4 models
> hide #5 models
> select add #6
4523 atoms, 4635 bonds, 558 residues, 2 models selected
> select add #2
25995 atoms, 26520 bonds, 4 pseudobonds, 3279 residues, 3 models selected
> select subtract #2
3804 atoms, 3899 bonds, 469 residues, 1 model selected
> select subtract #6
Nothing selected
> hide #6 models
> show #!7 models
> select add #7
2 models selected
> select subtract #7
Nothing selected
> select add #7
2 models selected
> select subtract #7
Nothing selected
> hide #!7 models
> show #8 models
> hide #!1 models
> show #!1 models
> hide #8 models
> show #9 models
> hide #9 models
> show #9 models
> hide #9 models
> show #9 models
> hide #!1 models
> save /Users/z.kilic/Desktop/Chimeraimages/ZeynepChimeraSession.cxs
> includeMaps true
> show #10 models
> show #11 models
> show #12 models
> show #13 models
> hide #!14 models
> color #9,10,11,12,13/A #C98CA7
> color #9,10,11,12,13/A ##BA55D3
> color #9,10,11,12,13/A #BA55D3
> color #9,10,11,12,13 #BA55D3
> color #9,10,11,12,13 #9370DB
> show #!1 models
> show #4 models
> show #5 models
> color #9,10,11,12,13 #FFC0CB
> hide #!1 models
> show #!1 models
> hide #4 models
> hide #5 models
> show #17 models
> hide #17 models
> show #17 models
> hide #17 models
> show #17 models
> hide #17 models
> show #17 models
> hide #17 models
> show #21 models
> hide #21 models
> show #22 models
> hide #22 models
> show #21 models
> hide #21 models
> show #23 models
> hide #23 models
> show #!16 models
> show #17 models
> hide #!16 models
> show #!16 models
> hide #!16 models
> show #!16 models
> hide #!16 models
> show #!16 models
> hide #!16 models
> hide #17 models
> show #17 models
> show #18 models
> hide #18 models
> show #5 models
> show #18 models
> hide #18 models
> show #18 models
> hide #18 models
> show #19 models
> hide #19 models
> show #19 models
> hide #19 models
> show #19 models
> hide #17 models
> hide #5 models
> hide #19 models
> show #19 models
> hide #19 models
> show #19 models
> hide #19 models
> show #19 models
> hide #!1 models
> show #6 models
> hide #6 models
> show #!1 models
> show #15 models
> hide #15 models
> show #15 models
> hide #15 models
> show #15 models
> color #15 #FFC0CB
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> select add #9
10776 atoms, 11022 bonds, 1364 residues, 1 model selected
> select subtract #9
Nothing selected
> select add #10
10776 atoms, 11022 bonds, 1364 residues, 1 model selected
> select add #9
21552 atoms, 22044 bonds, 2728 residues, 2 models selected
> color #9 #ffc0cba1
> select subtract #9
10776 atoms, 11022 bonds, 1364 residues, 1 model selected
> select add #9
21552 atoms, 22044 bonds, 2728 residues, 2 models selected
> select subtract #9
10776 atoms, 11022 bonds, 1364 residues, 1 model selected
> select subtract #10
Nothing selected
> select add #9
10776 atoms, 11022 bonds, 1364 residues, 1 model selected
> color #9 pink
> select subtract #9
Nothing selected
> select add #10
10776 atoms, 11022 bonds, 1364 residues, 1 model selected
> color #9 #f4cbd1ff
> select subtract #10
Nothing selected
> select add #10
10776 atoms, 11022 bonds, 1364 residues, 1 model selected
> select subtract #10
Nothing selected
> select add #10
10776 atoms, 11022 bonds, 1364 residues, 1 model selected
> select add #9
21552 atoms, 22044 bonds, 2728 residues, 2 models selected
> select add #11
32328 atoms, 33066 bonds, 4092 residues, 3 models selected
> select add #12
43104 atoms, 44088 bonds, 5456 residues, 4 models selected
> select add #13
53880 atoms, 55110 bonds, 6820 residues, 5 models selected
> color sel #FFC0CB
> select subtract #13
43104 atoms, 44088 bonds, 5456 residues, 4 models selected
> select subtract #12
32328 atoms, 33066 bonds, 4092 residues, 3 models selected
> select subtract #11
21552 atoms, 22044 bonds, 2728 residues, 2 models selected
> select subtract #10
10776 atoms, 11022 bonds, 1364 residues, 1 model selected
> select subtract #9
Nothing selected
> color #10 #FF9AB0
> color #11 #FF7595
> color #12 #FF4F7A
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> color #12 #FFC0CB
> color #9,10,11,12 #FFC0CB
> show #!1 models
> show #!16 models
> hide #!16 models
> show #!16 models
> hide #!16 models
> show #!16 models
> hide #!16 models
> show #17 models
> hide #17 models
> show #17 models
> hide #17 models
> show #18 models
> hide #18 models
> hide #19 models
> show #19 models
> hide #19 models
> show #19 models
> hide #19 models
> show #19 models
> hide #19 models
> show #19 models
> hide #19 models
> show #!20 models
> hide #!20 models
> show #21 models
> hide #21 models
> show #22 models
> hide #22 models
> show #23 models
> hide #23 models
> show #6 models
> hide #6 models
> color zone #1 distance 5
Missing required "near" argument
> select add #2
22191 atoms, 22621 bonds, 4 pseudobonds, 2810 residues, 2 models selected
> select add #4
25687 atoms, 26193 bonds, 4 pseudobonds, 3255 residues, 3 models selected
> select add #5
29183 atoms, 29765 bonds, 4 pseudobonds, 3700 residues, 4 models selected
> select add #6
32987 atoms, 33664 bonds, 4 pseudobonds, 4169 residues, 5 models selected
> select add #7
32987 atoms, 33664 bonds, 4 pseudobonds, 4169 residues, 7 models selected
> select add #8
34283 atoms, 34984 bonds, 4 pseudobonds, 4333 residues, 8 models selected
> select add #9
45059 atoms, 46006 bonds, 4 pseudobonds, 5697 residues, 9 models selected
> select add #10
55835 atoms, 57028 bonds, 4 pseudobonds, 7061 residues, 10 models selected
> select subtract #9
45059 atoms, 46006 bonds, 4 pseudobonds, 5697 residues, 9 models selected
> select subtract #10
34283 atoms, 34984 bonds, 4 pseudobonds, 4333 residues, 8 models selected
> select subtract #8
32987 atoms, 33664 bonds, 4 pseudobonds, 4169 residues, 7 models selected
> select subtract #7
32987 atoms, 33664 bonds, 4 pseudobonds, 4169 residues, 5 models selected
> select subtract #6
29183 atoms, 29765 bonds, 4 pseudobonds, 3700 residues, 4 models selected
> select subtract #5
25687 atoms, 26193 bonds, 4 pseudobonds, 3255 residues, 3 models selected
> select subtract #4
22191 atoms, 22621 bonds, 4 pseudobonds, 2810 residues, 2 models selected
> select add #9
32967 atoms, 33643 bonds, 4 pseudobonds, 4174 residues, 3 models selected
> select add #10
43743 atoms, 44665 bonds, 4 pseudobonds, 5538 residues, 4 models selected
> select add #11
54519 atoms, 55687 bonds, 4 pseudobonds, 6902 residues, 5 models selected
> select add #12
65295 atoms, 66709 bonds, 4 pseudobonds, 8266 residues, 6 models selected
> select add #13
76071 atoms, 77731 bonds, 4 pseudobonds, 9630 residues, 7 models selected
> select add #15
129951 atoms, 132841 bonds, 4 pseudobonds, 16450 residues, 8 models selected
> color zone #1 near sel distance 5
> show #!14 models
> select add #14
152142 atoms, 155462 bonds, 8 pseudobonds, 19260 residues, 10 models selected
> color zone #1 near sel distance 5
> lighting soft
> select subtract #15
98262 atoms, 100352 bonds, 8 pseudobonds, 12440 residues, 9 models selected
> select subtract #14
76071 atoms, 77731 bonds, 4 pseudobonds, 9630 residues, 7 models selected
> select subtract #13
65295 atoms, 66709 bonds, 4 pseudobonds, 8266 residues, 6 models selected
> select subtract #12
54519 atoms, 55687 bonds, 4 pseudobonds, 6902 residues, 5 models selected
> select subtract #11
43743 atoms, 44665 bonds, 4 pseudobonds, 5538 residues, 4 models selected
> select subtract #10
32967 atoms, 33643 bonds, 4 pseudobonds, 4174 residues, 3 models selected
> select subtract #9
22191 atoms, 22621 bonds, 4 pseudobonds, 2810 residues, 2 models selected
> select subtract #2
Nothing selected
> save /Users/z.kilic/Desktop/Chimeraimages/ZeynepChimeraSession.cxs
> includeMaps true
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> lighting simple
> lighting soft
> lighting full
> lighting soft
> lighting flat
> lighting shadows true intensity 0.5
> lighting flat
> lighting full
> lighting soft
> color #1 #b2b2b233 models
> color #1 #b2b2b266 models
> show #19 models
> show #6 models
> show #23 models
> save /Users/z.kilic/Desktop/Chimeraimages/Structure.png width 2000 height
> 1865 supersample 4
> hide #!2 models
> show #!2 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> color #19 #B22222
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> color #2,14/A,D #4B0082
> show #!1 models
> hide #!1 models
> color #2,14/A,D #008080
> color #2,14/A,D #663399
> color #2,14/C,F #32CD32
> color #2,14/C,F #FFD700
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> color #9,10,11,12,13,15 #FFB6C1
> hide #!1 models
> color #9,10,11,12,13,15 #DA70D6
> color #9,10,11,12,13,15 #DDA0DD
> color #2,14/A,D #E76D83
> color #9,10,11,12,13,15 #C98CA7
> color #9,10,11,12,13,15 #DEBACA
> color #9,10,11,12,13,15 #9CA8D3
> color #9,10,11,12,13,15 #C5AAB6
> color #9,10,11,12,13,15 #B592A1
> color #9,10,11,12,13,15 #B9648C
> color #9,10,11,12,13,15 #6184D8
> color #9,10,11,12,13,15 #8DA6E2
> view front
> show #!1 models
> hide #!1 models
> hide #19 models
> show #19 models
> color #19/A #78586F
> color #19/A #461220
> color #19/A #721D34
> color #9,10,11,12,13,15 #F4AFAB
> color #9,10,11,12,13,15 #F8CBC9
> color #19/A #34623F
> color #19/A #79B988
> color #19/B #E4572E
> color #19/A #7E2A10
> color #19/A #B53C17
> color #19/B #E86F4A
> show #!1 models
> select add #23
7939 atoms, 8086 bonds, 993 residues, 1 model selected
> copy sel
Unknown command: copy sel
> combine sel
> hide #23 models
> show #23 models
> hide #23 models
> copy #23
Unknown command: copy #23
> show #23 models
> hide #23 models
> select subtract #23
Nothing selected
> hide #3 models
> show #3 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #3 models
> show #3 models
> show #23 models
> hide #23 models
> show #23 models
> select add #23
7939 atoms, 8086 bonds, 993 residues, 1 model selected
> select subtract #23
Nothing selected
> select add #23
7939 atoms, 8086 bonds, 993 residues, 1 model selected
> select subtract #23
Nothing selected
> hide #23 models
> show #23 models
> hide #23 models
> show #23 models
> select add #23
7939 atoms, 8086 bonds, 993 residues, 1 model selected
> ui mousemode right "translate selected models"
> view matrix models #23,1,0,0,-41.93,0,1,0,54.682,0,0,1,0.87034
> ui mousemode right "rotate selected models"
> view matrix models
> #23,0.67756,0.2977,0.67252,-169.44,-0.63474,-0.22521,0.73918,441.68,0.37152,-0.92771,0.036368,353.75
> view matrix models
> #23,0.16435,0.36502,0.91638,-70.843,-0.17261,-0.90404,0.39106,554.48,0.97118,-0.22245,-0.085569,-17.083
> close #23
> copy #3
Unknown command: copy #3
> select add #3
7939 atoms, 8086 bonds, 993 residues, 1 model selected
> copy #3
Unknown command: copy #3
> combine #3
> combine #3,4
Remapping chain ID 'A' in AF-P68372-F1-model_v4.pdb #4 to 'B'
> close #24
> select add #23
15878 atoms, 16172 bonds, 1986 residues, 2 models selected
> select subtract #3
7939 atoms, 8086 bonds, 993 residues, 1 model selected
> ui mousemode right "move picked models"
> view matrix models #1,1,0,0,21.756,0,1,0,-6.183,0,0,1,1.951
> undo
Undo failed, probably because structures have been modified.
> ui mousemode right "move picked models"
> ui mousemode right translate
> select add #23
7939 atoms, 8086 bonds, 993 residues, 1 model selected
> ui mousemode right "translate selected models"
> view matrix models #23,1,0,0,-52.54,0,1,0,18.636,0,0,1,5.448
> ui mousemode right "rotate selected models"
> view matrix models
> #23,-0.46242,-0.081309,-0.88293,663.88,-0.172,-0.96865,0.17928,584.47,-0.86982,0.23476,0.43393,361.96
> ui mousemode right "translate selected models"
> view matrix models
> #23,-0.46242,-0.081309,-0.88293,680.28,-0.172,-0.96865,0.17928,643.39,-0.86982,0.23476,0.43393,362.19
> ui mousemode right "translate selected models"
> ui mousemode right "rotate selected models"
> view matrix models
> #23,-0.93077,0.07271,-0.35829,675.66,-0.20744,-0.91202,0.35382,599.8,-0.30104,0.40365,0.86397,25.568
> ui mousemode right "translate selected models"
> view matrix models
> #23,-0.93077,0.07271,-0.35829,670.77,-0.20744,-0.91202,0.35382,600.27,-0.30104,0.40365,0.86397,24.92
> ui mousemode right "translate selected models"
> ui mousemode right translate
> ui mousemode right "translate selected models"
> view matrix models
> #23,-0.93077,0.07271,-0.35829,671.33,-0.20744,-0.91202,0.35382,609.76,-0.30104,0.40365,0.86397,11.092
> ui mousemode right translate
> ui mousemode right "translate selected models"
> view matrix models
> #23,-0.93077,0.07271,-0.35829,672.28,-0.20744,-0.91202,0.35382,603.31,-0.30104,0.40365,0.86397,9.9502
> ui mousemode right translate
> ui tool show "Fit in Map"
> fitmap #23 inMap #1
Fit molecule copy of copy of NLRP14_MmCPLs_UNK3_col_best_Q6B966.pdb (#23) to
map cryosparc_P105_J104_004_volume_map_deepEM_tight.mrc (#1) using 7939 atoms
average map value = 0.1399, steps = 172
shifted from previous position = 6.03
rotated from previous position = 30.4 degrees
atoms outside contour = 3252, contour level = 0.030497
Position of copy of copy of NLRP14_MmCPLs_UNK3_col_best_Q6B966.pdb (#23)
relative to cryosparc_P105_J104_004_volume_map_deepEM_tight.mrc (#1)
coordinates:
Matrix rotation and translation
-0.99983206 0.01538943 -0.00994810 634.28124940
-0.01548124 -0.99983765 0.00921811 638.62034953
-0.00980462 0.00937059 0.99990801 0.99574242
Axis 0.00493894 -0.00464764 -0.99997700
Axis point 319.60765879 316.86000059 0.00000000
Rotation angle (degrees) 179.11556496
Shift along axis -0.83111627
> save /Users/z.kilic/Desktop/Chimeraimages/ZeynepChimeraSession2.cxs
> combine #19
> ui mousemode right "translate selected models"
> select subtract #23
Nothing selected
> select add #24
6907 atoms, 7069 bonds, 870 residues, 1 model selected
> view matrix models
> #24,-0.62951,-0.72015,-0.29173,311.88,0.08676,-0.43826,0.89465,320.74,-0.77213,0.53788,0.33837,252.56
> ui mousemode right translate
> ui mousemode right "translate selected models"
> view matrix models
> #24,-0.62951,-0.72015,-0.29173,274.85,0.08676,-0.43826,0.89465,330.24,-0.77213,0.53788,0.33837,252.88
> ui mousemode right translate
> undo
> ui mousemode right "translate selected models"
> view matrix models
> #24,-0.62951,-0.72015,-0.29173,282,0.08676,-0.43826,0.89465,322.24,-0.77213,0.53788,0.33837,254.66
> ui mousemode right translate
> ui mousemode right "translate selected models"
> view matrix models
> #24,-0.62951,-0.72015,-0.29173,304.3,0.08676,-0.43826,0.89465,309.47,-0.77213,0.53788,0.33837,231.25
> ui mousemode right translate
> hide #!1 models
> show #!1 models
> ui mousemode right "rotate selected models"
> view matrix models
> #24,0.98774,0.12279,-0.096426,375.38,0.1453,-0.94894,0.28,312.79,-0.057122,-0.29057,-0.95515,264.32
> view matrix models
> #24,-0.28142,0.56856,0.77301,309.77,-0.04477,-0.81247,0.58128,305.9,0.95854,0.12897,0.25409,349.55
> view matrix models
> #24,-0.52008,0.52756,0.67171,293.55,-0.12368,-0.82467,0.55193,300.62,0.84511,0.20397,0.49415,347.7
> ui mousemode right "translate selected models"
> view matrix models
> #24,-0.52008,0.52756,0.67171,267.8,-0.12368,-0.82467,0.55193,301.37,0.84511,0.20397,0.49415,355.84
> ui mousemode right "rotate selected models"
> view matrix models
> #24,-0.62301,0.56799,0.53782,255.5,0.016518,-0.67785,0.73501,310.15,0.78204,0.4668,0.41293,338.89
> ui mousemode right "translate selected models"
> view matrix models
> #24,-0.62301,0.56799,0.53782,256.25,0.016518,-0.67785,0.73501,317.35,0.78204,0.4668,0.41293,337.9
> ui mousemode right translate
> hide #!2 models
> hide #3 models
> hide #6 models
> hide #9 models
> hide #10 models
> hide #11 models
> hide #12 models
> hide #13 models
> hide #!14 models
> hide #15 models
> show #!14 models
> show #!2 models
> show #3 models
> hide #3 models
> show #3 models
> ui mousemode right "translate selected models"
> view matrix models
> #24,-0.62301,0.56799,0.53782,262.77,0.016518,-0.67785,0.73501,311.47,0.78204,0.4668,0.41293,326.03
> ui mousemode right translate
> ui mousemode right "rotate selected models"
> view matrix models
> #24,0.48285,-0.56326,-0.67051,334.39,-0.72309,-0.68835,0.057532,244.47,-0.49395,0.45706,-0.73967,210.65
> view matrix models
> #24,0.38014,-0.92194,0.074342,367.23,-0.49078,-0.13292,0.86109,263.31,-0.78399,-0.36382,-0.503,233.53
> view matrix models
> #24,0.14384,-0.96571,0.21612,359.37,-0.27513,0.17076,0.94612,267.16,-0.95058,-0.19556,-0.24114,225.49
> view matrix models
> #24,0.70791,-0.20734,0.67518,378.77,-0.23114,0.8353,0.49885,228.55,-0.66741,-0.5092,0.54339,281.26
> view matrix models
> #24,0.74417,-0.32941,0.58111,382.68,-0.038595,0.84729,0.52972,240.77,-0.66687,-0.41663,0.61782,280.1
> ui mousemode right "translate selected models"
> view matrix models
> #24,0.74417,-0.32941,0.58111,377.03,-0.038595,0.84729,0.52972,237.2,-0.66687,-0.41663,0.61782,283.79
> ui mousemode right translate
> ui mousemode right "translate selected models"
> view matrix models
> #24,0.74417,-0.32941,0.58111,380.56,-0.038595,0.84729,0.52972,241.55,-0.66687,-0.41663,0.61782,279.24
> ui mousemode right translate
> ui mousemode right "rotate selected models"
> view matrix models
> #24,0.78911,-0.48729,-0.37398,357.7,0.42053,-0.015208,0.90715,316.18,-0.44773,-0.87311,0.19292,296.46
> view matrix models
> #24,0.7602,0.11142,-0.64007,323.33,0.37894,-0.87629,0.29752,327.5,-0.52774,-0.46872,-0.70837,245.52
> view matrix models
> #24,0.76081,-0.35309,-0.54451,344.98,-0.27313,-0.93532,0.22488,287.9,-0.58869,-0.02237,-0.80805,220.79
> view matrix models
> #24,0.65076,-0.61749,-0.44184,352.22,-0.4709,-0.78471,0.40309,275.88,-0.59562,-0.05425,-0.80143,221.86
> view matrix models
> #24,-0.48346,-0.43704,0.75846,316.35,-0.0098709,-0.86367,-0.50395,276.71,0.87531,-0.25113,0.41324,359.31
> view matrix models
> #24,-0.50836,-0.42652,0.7481,314.07,0.16507,-0.90088,-0.40145,292.21,0.84517,-0.080592,0.52838,354.56
> ui mousemode right translate
> ui mousemode right clip
> ui mousemode right translate
> ui mousemode right "translate selected models"
> view matrix models
> #24,-0.50836,-0.42652,0.7481,311.95,0.16507,-0.90088,-0.40145,287.43,0.84517,-0.080592,0.52838,351.96
> ui mousemode right "rotate selected models"
> view matrix models
> #24,-0.30095,0.70272,0.64469,276.27,0.19998,-0.61449,0.76316,317.01,0.93244,0.35859,0.044404,323.69
> view matrix models
> #24,-0.70946,-0.537,0.45639,294.42,-0.22933,-0.43643,-0.87002,229.47,0.66639,-0.72191,0.18648,355.17
> view matrix models
> #24,-0.74376,-0.28623,0.60406,287.32,-0.15961,-0.8015,-0.57631,257.98,0.64911,-0.52505,0.55044,358.45
> view matrix models
> #24,-0.43817,0.18177,0.88032,296.48,-0.27363,-0.95984,0.061994,278.63,0.85623,-0.21371,0.47031,355.98
> view matrix models
> #24,-0.34855,-0.018291,0.93711,311.75,0.013746,-0.9998,-0.014402,295.09,0.93719,0.0078613,0.34873,348.04
> view matrix models
> #24,-0.71892,-0.67965,-0.14569,279.43,-0.21082,0.41293,-0.88603,196.37,0.66235,-0.60627,-0.44014,329.44
> view matrix models
> #24,-0.98027,-0.19146,0.049221,250.73,-0.073016,0.11928,-0.99017,212.89,0.18371,-0.97422,-0.13091,325.35
> view matrix models
> #24,-0.70598,-0.59745,-0.38032,269.13,0.63382,-0.29337,-0.71568,281.26,0.31601,-0.74631,0.58579,348.22
> view matrix models
> #24,-0.50351,-0.61733,-0.60447,274.72,0.68542,0.14053,-0.71446,267.21,0.526,-0.77405,0.35237,354.26
> view matrix models
> #24,-0.074594,0.73066,-0.67865,244.76,0.20474,0.67727,0.70667,264.17,0.97597,-0.086233,-0.20011,335.82
> ui mousemode right "translate selected models"
> view matrix models
> #24,-0.074594,0.73066,-0.67865,241.87,0.20474,0.67727,0.70667,262.47,0.97597,-0.086233,-0.20011,338.27
> view matrix models
> #24,-0.074594,0.73066,-0.67865,238.85,0.20474,0.67727,0.70667,264.03,0.97597,-0.086233,-0.20011,343.07
> ui mousemode right "rotate selected models"
> view matrix models
> #24,0.67182,-0.67818,-0.29788,352.67,-0.60901,-0.73464,0.29902,257.13,-0.42162,-0.019478,-0.90656,232.16
> ui mousemode right "translate selected models"
> view matrix models
> #24,0.67182,-0.67818,-0.29788,368.02,-0.60901,-0.73464,0.29902,263.23,-0.42162,-0.019478,-0.90656,217.19
> view matrix models
> #24,0.67182,-0.67818,-0.29788,358.56,-0.60901,-0.73464,0.29902,256.36,-0.42162,-0.019478,-0.90656,224.35
> view matrix models
> #24,0.67182,-0.67818,-0.29788,364.04,-0.60901,-0.73464,0.29902,261.52,-0.42162,-0.019478,-0.90656,220.99
> ui mousemode right "rotate selected models"
> view matrix models
> #24,0.74669,0.64781,0.15096,330.94,0.30344,-0.12977,-0.94397,251.37,-0.59193,0.75066,-0.29347,200.55
> view matrix models
> #24,0.32009,-0.36905,0.87255,369.49,0.090133,0.92869,0.35973,239.92,-0.94309,-0.0365,0.33053,231.31
> view matrix models
> #24,0.29383,-0.41049,0.86323,369.23,0.11936,0.91178,0.39295,243.47,-0.94838,-0.012425,0.3169,229.58
> view matrix models
> #24,0.26818,-0.36698,0.89074,366.87,0.16886,0.9282,0.33157,243.77,-0.94845,0.06149,0.31089,226.44
> ui mousemode right "translate selected models"
> view matrix models
> #24,0.26818,-0.36698,0.89074,358.52,0.16886,0.9282,0.33157,232.05,-0.94845,0.06149,0.31089,228.95
> ui mousemode right "rotate selected models"
> view matrix models
> #24,0.88332,0.44093,0.15913,339.36,0.0077214,0.32574,-0.94543,203.6,-0.4687,0.83634,0.28433,226.39
> view matrix models
> #24,0.80364,0.52756,0.2754,334.97,0.083642,0.35804,-0.92995,207.44,-0.58921,0.77038,0.24361,220.35
> view matrix models
> #24,0.77247,0.53986,0.33444,334.56,0.17612,0.32385,-0.92957,214.41,-0.61014,0.77696,0.15508,215.87
> view matrix models
> #24,0.95965,0.18483,0.2119,355.9,0.095014,0.49611,-0.86304,204.88,-0.26464,0.84836,0.45854,244.09
> view matrix models
> #24,0.93964,0.28134,0.19473,350.29,0.061305,0.42148,-0.90476,204.41,-0.33662,0.86209,0.37879,236.53
> view matrix models
> #24,0.8462,0.50224,-0.17805,323.43,-0.13356,-0.12357,-0.98331,211.6,-0.51586,0.85585,-0.037489,212.03
> view matrix models
> #24,0.83002,0.46926,-0.30144,319.65,-0.19257,-0.26612,-0.94451,214.98,-0.52344,0.84201,-0.13052,209.02
> view matrix models
> #24,0.73867,0.51598,-0.43374,307.84,-0.39554,-0.18925,-0.89874,201.15,-0.54581,0.83544,0.064296,214.42
> view matrix models
> #24,0.73555,0.66795,-0.11314,312.32,-0.25662,0.12016,-0.95901,195.29,-0.62698,0.73444,0.25979,220.03
> view matrix models
> #24,0.64858,0.73609,-0.19367,301.66,-0.42485,0.13898,-0.89453,186.49,-0.63154,0.66246,0.40287,227.38
> ui mousemode right "translate selected models"
> view matrix models
> #24,0.64858,0.73609,-0.19367,300.59,-0.42485,0.13898,-0.89453,189.91,-0.63154,0.66246,0.40287,230.99
> ui mousemode right "rotate selected models"
> view matrix models
> #24,0.75314,0.65145,-0.091557,313.69,-0.21575,0.11312,-0.96987,201.09,-0.62147,0.75021,0.22574,222.21
> view matrix models
> #24,0.69818,-0.3096,0.64552,373.06,0.38792,0.92142,0.022366,238.69,-0.60172,0.23479,0.76342,261.78
> view matrix models
> #24,0.5857,0.022904,0.81021,358.54,-0.11975,0.99108,0.058547,206.37,-0.80164,-0.13131,0.58321,258.19
> view matrix models
> #24,0.3957,-0.87173,-0.28899,345.87,-0.1561,-0.37394,0.91422,286.85,-0.90501,-0.31665,-0.28405,230.36
> view matrix models
> #24,0.71624,0.60552,-0.34692,304.76,-0.095484,-0.40741,-0.90824,231.09,-0.69129,0.68364,-0.23399,205.29
> view matrix models
> #24,0.61338,0.78948,-0.021946,302.06,-0.24174,0.16122,-0.95685,198.04,-0.75188,0.59222,0.28974,222.71
> view matrix models
> #24,0.60419,0.79476,0.057503,303.94,-0.22771,0.24137,-0.94334,196.16,-0.76361,0.55686,0.32681,224.64
> ui mousemode right translate
> ui mousemode right "translate selected models"
> view matrix models
> #24,0.60419,0.79476,0.057503,299.14,-0.22771,0.24137,-0.94334,191.41,-0.76361,0.55686,0.32681,221.39
> ui mousemode right translate
> ui mousemode right "translate selected models"
> view matrix models
> #24,0.60419,0.79476,0.057503,297.97,-0.22771,0.24137,-0.94334,200.8,-0.76361,0.55686,0.32681,222.58
> ui mousemode right "rotate selected models"
> view matrix models
> #24,0.64291,0.69597,0.31983,312.98,-0.18267,0.54484,-0.8184,195.66,-0.74384,0.46774,0.47742,232.33
> view matrix models
> #24,0.73944,0.67102,0.054508,310.98,-0.26932,0.36904,-0.88953,195.01,-0.61701,0.64307,0.4536,232.27
> view matrix models
> #24,0.79559,0.60054,0.079882,318.02,-0.25034,0.44596,-0.85933,194.12,-0.55169,0.66368,0.50514,237.13
> view matrix models
> #24,0.80639,0.57379,0.14319,321.85,-0.12845,0.40628,-0.90467,201.57,-0.57727,0.71112,0.40133,230.23
> ui mousemode right translate
> fitmap #24 inMap map #1
Invalid "inMap" argument: invalid density map specifier
> fitmap #24 inMap Map #1
Invalid "inMap" argument: invalid density map specifier
> fitmap #24 inMap #1
Fit molecule copy of 1tub (#24) to map
cryosparc_P105_J104_004_volume_map_deepEM_tight.mrc (#1) using 6907 atoms
average map value = 0.187, steps = 108
shifted from previous position = 6.84
rotated from previous position = 15.5 degrees
atoms outside contour = 1589, contour level = 0.030497
Position of copy of 1tub (#24) relative to
cryosparc_P105_J104_004_volume_map_deepEM_tight.mrc (#1) coordinates:
Matrix rotation and translation
0.63320054 0.71696509 0.29157854 311.96154219
-0.08602603 0.43958126 -0.89407370 198.65299842
-0.76919212 0.54104463 0.34002077 218.82689584
Axis 0.73335010 0.54205724 -0.41033106
Axis point 0.00000000 -285.00338203 251.28428706
Rotation angle (degrees) 78.08845819
Shift along axis 246.66685282
> ui mousemode right translate
> show #4 models
> show #5 models
> hide #5 models
> hide #4 models
> show #4 models
> show #5 models
> hide #5 models
> hide #4 models
> show #6 models
> hide #6 models
> show #6 models
> select subtract #24
Nothing selected
> hide #6 models
> show #6 models
> combine #6
> select add #25
3804 atoms, 3899 bonds, 469 residues, 1 model selected
> ui mousemode right "translate selected models"
> ui mousemode right rotate
> ui mousemode right "translate selected models"
> view matrix models
> #25,0.49877,0.52971,-0.68603,235.24,0.56391,0.40276,0.72097,275.59,0.65821,-0.74646,-0.097821,308.38
> ui mousemode right "rotate selected models"
> view matrix models
> #25,-0.60702,-0.64749,0.46074,225.04,-0.4221,-0.22853,-0.87727,263.88,0.67332,-0.727,-0.13459,308.49
> ui mousemode right "translate selected models"
> view matrix models
> #25,-0.60702,-0.64749,0.46074,239.67,-0.4221,-0.22853,-0.87727,278.88,0.67332,-0.727,-0.13459,308.31
> ui mousemode right translate
> fitmap #25 inMap #1
Fit molecule copy of AF-Q3TSA9-F1-model_v4.pdb (#25) to map
cryosparc_P105_J104_004_volume_map_deepEM_tight.mrc (#1) using 3804 atoms
average map value = 0.1562, steps = 60
shifted from previous position = 2.95
rotated from previous position = 15.8 degrees
atoms outside contour = 1110, contour level = 0.030497
Position of copy of AF-Q3TSA9-F1-model_v4.pdb (#25) relative to
cryosparc_P105_J104_004_volume_map_deepEM_tight.mrc (#1) coordinates:
Matrix rotation and translation
-0.49624010 -0.53331798 0.68506770 239.89992325
-0.56487095 -0.40088422 -0.72125773 278.04455604
0.65929252 -0.74489183 -0.10232101 305.77326088
Axis -0.50177306 0.54723008 -0.66989778
Axis point 8.70987817 262.56776834 -0.00000000
Rotation angle (degrees) 178.65052600
Shift along axis -173.05780338
> view front
> show #4 models
> hide #4 models
> show #4 models
> hide #4 models
> show #4 models
> hide #4 models
> show #4 models
> hide #4 models
> show #4 models
> hide #4 models
> hide #24 models
> show #24 models
> hide #19 models
> show #4 models
> hide #4 models
> show #5 models
> hide #6 models
> show #19 models
> hide #19 models
> hide #5 models
> show #19 models
> hide #19 models
> show #5 models
> hide #5 models
> show #5 models
> hide #5 models
> show #19 models
> hide #!14 models
> show #15 models
> hide #15 models
> hide #19 models
> show #4 models
> hide #4 models
> show #4 models
> hide #4 models
> show #19 models
> hide #19 models
> show #4 models
> hide #4 models
> show #19 models
> show #4 models
> hide #4 models
> show #4 models
> hide #4 models
> show #4 models
> hide #4 models
> show #4 models
> hide #4 models
> show #4 models
> hide #4 models
> show #4 models
> hide #4 models
> hide #19 models
> show #4 models
> hide #4 models
> show #4 models
> hide #4 models
> show #19 models
> hide #19 models
> show #19 models
> hide #19 models
> show #19 models
> hide #19 models
> show #4 models
> hide #4 models
> show #4 models
> show #5 models
> hide #5 models
> hide #4 models
> show #19 models
> hide #19 models
> show #4 models
> hide #4 models
> show #4 models
> hide #4 models
> show #19 models
> show #6 models
> show #!7 models
> hide #!7 models
> show #8 models
> hide #8 models
> show #!7 models
> hide #!7 models
> show #8 models
> hide #8 models
> show #8 models
> hide #8 models
> show #8 models
> hide #8 models
> hide #!2 models
> show #!2 models
> show #9 models
> show #10 models
> show #11 models
> show #12 models
> show #13 models
> show #!14 models
> show #15 models
> show #17 models
> hide #17 models
> show #17 models
> hide #17 models
> show #17 models
> hide #17 models
> hide #19 models
> show #17 models
> show #18 models
> hide #18 models
> show #18 models
> hide #18 models
> hide #17 models
> show #19 models
> hide #19 models
> show #19 models
> hide #19 models
> show #17 models
> hide #17 models
> show #19 models
> hide #19 models
> show #17 models
> hide #17 models
> show #19 models
> view front
> ui mousemode right translate
> select subtract #25
Nothing selected
> lighting soft
> lighting full
> lighting soft
> lighting simple
> lighting soft
> lighting full
> select add #1
2 models selected
> color #1 #b2b2b2ff models
> view front
> name view front
"front": invalid atom specifier
> view name front
> view front
> select subtract #1
Nothing selected
> select add #2
22191 atoms, 22621 bonds, 4 pseudobonds, 2810 residues, 2 models selected
> select add #3
30130 atoms, 30707 bonds, 4 pseudobonds, 3803 residues, 3 models selected
> select add #4
33626 atoms, 34279 bonds, 4 pseudobonds, 4248 residues, 4 models selected
> select subtract #3
25687 atoms, 26193 bonds, 4 pseudobonds, 3255 residues, 3 models selected
> select subtract #4
22191 atoms, 22621 bonds, 4 pseudobonds, 2810 residues, 2 models selected
> select subtract #2
Nothing selected
> select add #2
22191 atoms, 22621 bonds, 4 pseudobonds, 2810 residues, 2 models selected
> select add #3
30130 atoms, 30707 bonds, 4 pseudobonds, 3803 residues, 3 models selected
> select add #6
33934 atoms, 34606 bonds, 4 pseudobonds, 4272 residues, 4 models selected
> select add #9
44710 atoms, 45628 bonds, 4 pseudobonds, 5636 residues, 5 models selected
> select add #10
55486 atoms, 56650 bonds, 4 pseudobonds, 7000 residues, 6 models selected
> select add #11
66262 atoms, 67672 bonds, 4 pseudobonds, 8364 residues, 7 models selected
> select add #12
77038 atoms, 78694 bonds, 4 pseudobonds, 9728 residues, 8 models selected
> select add #13
87814 atoms, 89716 bonds, 4 pseudobonds, 11092 residues, 9 models selected
> select add #14
110005 atoms, 112337 bonds, 8 pseudobonds, 13902 residues, 11 models selected
> select add #15
163885 atoms, 167447 bonds, 8 pseudobonds, 20722 residues, 12 models selected
> select add #19
170792 atoms, 174516 bonds, 8 pseudobonds, 21592 residues, 13 models selected
> select add #23
178731 atoms, 182602 bonds, 8 pseudobonds, 22585 residues, 14 models selected
> select add #24
185638 atoms, 189671 bonds, 8 pseudobonds, 23455 residues, 15 models selected
> select add #25
189442 atoms, 193570 bonds, 8 pseudobonds, 23924 residues, 16 models selected
> color zone #1 near sel distance 5
> select subtract #25
185638 atoms, 189671 bonds, 8 pseudobonds, 23455 residues, 15 models selected
> select subtract #24
178731 atoms, 182602 bonds, 8 pseudobonds, 22585 residues, 14 models selected
> select subtract #23
170792 atoms, 174516 bonds, 8 pseudobonds, 21592 residues, 13 models selected
> select subtract #19
163885 atoms, 167447 bonds, 8 pseudobonds, 20722 residues, 12 models selected
> select subtract #15
110005 atoms, 112337 bonds, 8 pseudobonds, 13902 residues, 11 models selected
> select subtract #14
87814 atoms, 89716 bonds, 4 pseudobonds, 11092 residues, 9 models selected
> select subtract #13
77038 atoms, 78694 bonds, 4 pseudobonds, 9728 residues, 8 models selected
> select subtract #12
66262 atoms, 67672 bonds, 4 pseudobonds, 8364 residues, 7 models selected
> select subtract #11
55486 atoms, 56650 bonds, 4 pseudobonds, 7000 residues, 6 models selected
> select subtract #10
44710 atoms, 45628 bonds, 4 pseudobonds, 5636 residues, 5 models selected
> select subtract #9
33934 atoms, 34606 bonds, 4 pseudobonds, 4272 residues, 4 models selected
> select subtract #6
30130 atoms, 30707 bonds, 4 pseudobonds, 3803 residues, 3 models selected
> select subtract #3
22191 atoms, 22621 bonds, 4 pseudobonds, 2810 residues, 2 models selected
> select subtract #2
Nothing selected
> color zone #1 near sel distance 6
color zone: No atoms specified.
> color #8DA6E2 target a models #23
Expected a keyword
> color #8DA6E2 target a #23
Expected a keyword
> color #8DA6E2 target a models #23
Expected a keyword
> color "#8DA6E2" target a models #23
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword
> color atoms #23 color "#8DA6E2"
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword
> select add #23
7939 atoms, 8086 bonds, 993 residues, 1 model selected
> color atoms #23 color "#8DA6E2"
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword
> color #23 #8DA6E2
> color zone #1 near sel & #23 distance 12.7
> color #3 #8DA6E2
> select add #3
15878 atoms, 16172 bonds, 1986 residues, 2 models selected
> select add #2
38069 atoms, 38793 bonds, 4 pseudobonds, 4796 residues, 4 models selected
> select add #6
41873 atoms, 42692 bonds, 4 pseudobonds, 5265 residues, 5 models selected
> select add #9
52649 atoms, 53714 bonds, 4 pseudobonds, 6629 residues, 6 models selected
> select add #10
63425 atoms, 64736 bonds, 4 pseudobonds, 7993 residues, 7 models selected
> select add #12
74201 atoms, 75758 bonds, 4 pseudobonds, 9357 residues, 8 models selected
> select add #11
84977 atoms, 86780 bonds, 4 pseudobonds, 10721 residues, 9 models selected
> select add #13
95753 atoms, 97802 bonds, 4 pseudobonds, 12085 residues, 10 models selected
> select add #14
117944 atoms, 120423 bonds, 8 pseudobonds, 14895 residues, 12 models selected
> select add #15
171824 atoms, 175533 bonds, 8 pseudobonds, 21715 residues, 13 models selected
> select add #19
178731 atoms, 182602 bonds, 8 pseudobonds, 22585 residues, 14 models selected
> select add #24
185638 atoms, 189671 bonds, 8 pseudobonds, 23455 residues, 15 models selected
> select add #25
189442 atoms, 193570 bonds, 8 pseudobonds, 23924 residues, 16 models selected
Color zone shortcut requires 1 displayed atomic model and 1 map, got 14 atomic
models, 1 maps.
> color zone #1 near sel distance 5
> color zone #1 near sel distance 6
> color zone #1 near sel distance 7
> select nothing
Expected an objects specifier or a keyword
> ~select
Nothing selected
> select #
Expected an objects specifier or a keyword
> select /
Expected an objects specifier or a keyword
> select #*
211005 atoms, 215617 bonds, 8 pseudobonds, 26654 residues, 31 models selected
> select ~
Expected an objects specifier or a keyword
> ~struts select
> struts delete select
Expected an atoms specifier or a keyword
> ~select
Nothing selected
> select all
211005 atoms, 215617 bonds, 8 pseudobonds, 26654 residues, 31 models selected
> hide #1
> show #1
> ~select
Nothing selected
> save /Users/z.kilic/Desktop/Chimeraimages/ZeynepChimeraSession2.cxs
> save /Users/z.kilic/Desktop/Chimeraimages/ZeynepChimeraSession2.cxs
> includeMaps true
> view name front
> rotate x 180
Unknown command: rotate x 180
> turn x 180
> view name back
> turn x 180
> turn y 90
> view name side
> turn y 90
> view side
> turn y 90
> view name right side
Expected fewer arguments
> view name rightside
> turn y 90
> view name leftside
> turn y 90
> turn z 90
> view front
> turn z 180
> view name top
> view name bottom
> view front
> save
> /Users/z.kilic/Desktop/Chimeraimages/Zeynep_CPLplaygroundfigures/Frontview.png
> width 2000 height 1479 supersample 4
> view back
> save
> /Users/z.kilic/Desktop/Chimeraimages/Zeynep_CPLplaygroundfigures/backview.png
> width 2000 height 1479 supersample 4
> view rightside
> save
> /Users/z.kilic/Desktop/Chimeraimages/Zeynep_CPLplaygroundfigures/rightside.png
> width 2000 height 1479 supersample 4
> view leftside
> save
> /Users/z.kilic/Desktop/Chimeraimages/Zeynep_CPLplaygroundfigures/leftside.png
> width 2000 height 1479 supersample 4
> view top
> save
> /Users/z.kilic/Desktop/Chimeraimages/Zeynep_CPLplaygroundfigures/topview.png
> width 1213 height 897 supersample 3
> view bottom
> save
> /Users/z.kilic/Desktop/Chimeraimages/Zeynep_CPLplaygroundfigures/bottomview.png
> width 2000 height 1479 supersample 4
> view top
> save /Users/z.kilic/Desktop/Chimeraimages/ZeynepChimeraSession2.cxs
> includeMaps true
QPainter::begin: Paint device returned engine == 0, type: 2
QPainter::translate: Painter not active
QPainter::setPen: Painter not active
QPainter::setBrush: Painter not active
QPainter::drawPoints: Painter not active
QPainter::end: Painter not active, aborted
QPainter::begin: Paint device returned engine == 0, type: 2
QPainter::translate: Painter not active
QPainter::setPen: Painter not active
QPainter::setBrush: Painter not active
QPainter::drawPoints: Painter not active
QPainter::end: Painter not active, aborted
Unsupported scale factor (0.000000) detected on Display0
Unsupported scale factor (0.000000) detected on Display1
> view top
> view rightside
> save
> /Users/z.kilic/Desktop/Chimeraimages/Zeynep_CPLplaygroundfigures/rightside.png
> width 2000 height 1704 supersample 4
> name view rightside
"rightside ": invalid atom specifier
> view name rightside
> view rightside
> save
> /Users/z.kilic/Desktop/Chimeraimages/Zeynep_CPLplaygroundfigures/rightside.png
> width 2000 height 1479 supersample 4
> view rightside
> hide #!1 models
> view front
> show #!1 models
> view front
> hide #!1 models
> view front
> save
> /Users/z.kilic/Desktop/Chimeraimages/Zeynep_CPLplaygroundfigures/models_frontview.png
> width 2000 height 1479 supersample 3
> view back
> save
> /Users/z.kilic/Desktop/Chimeraimages/Zeynep_CPLplaygroundfigures/models_backview.png
> width 2000 height 1479 supersample 4
> view top
> save
> /Users/z.kilic/Desktop/Chimeraimages/Zeynep_CPLplaygroundfigures/models_topview.png
> width 2000 height 1479 supersample 4
> view rightside
> save
> /Users/z.kilic/Desktop/Chimeraimages/Zeynep_CPLplaygroundfigures/models_rightsideview.png
> width 2000 height 1479 supersample 4
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#6/A:438@CA color #d783ff
#6/A:438@C color #d783ff
#6/A:438@CB color #d783ff
#6/A:438@O color #d783ff
#6/A:438@CG color #d783ff
#6/A:438@CD color #d783ff
#6/A:438@OE1 color #d783ff
#6/A:438@OE2 color #d783ff
#6/A:439@N color #d783ff
#6/A:439@CA color #d783ff
#6/A:439@C color #d783ff
#6/A:439@CB color #d783ff
#6/A:439@O color #d783ff
#6/A:439@CG color #d783ff
#6/A:439@CD color #d783ff
#6/A:439@CE color #d783ff
#6/A:439@NZ color #d783ff
#6/A:440@N color #d783ff
#6/A:440@CA color #d783ff
#6/A:440@C color #d783ff
#6/A:440@CB color #d783ff
#6/A:440@O color #d783ff
#6/A:440@CG2 color #d783ff
#6/A:440@OG1 color #d783ff
#6/A:441@N color #d783ff
#6/A:441@CA color #d783ff
#6/A:441@C color #d783ff
#6/A:441@CB color #d783ff
#6/A:441@O color #d783ff
#6/A:441@CG color #d783ff
#6/A:441@CD1 color #d783ff
#6/A:441@CD2 color #d783ff
#6/A:442@N color #d783ff
#6/A:442@CA color #d783ff
#6/A:442@C color #d783ff
#6/A:442@CB color #d783ff
#6/A:442@O color #d783ff
#6/A:442@SG color #d783ff
#6/A:443@N color #d783ff
#6/A:443@CA color #d783ff
#6/A:443@C color #d783ff
#6/A:443@CB color #d783ff
#6/A:443@O color #d783ff
#6/A:443@CG color #d783ff
#6/A:443@OD1 color #d783ff
#6/A:443@OD2 color #d783ff
#6/A:444@N color #d783ff
#6/A:444@CA color #d783ff
#6/A:444@C color #d783ff
#6/A:444@CB color #d783ff
#6/A:444@O color #d783ff
#6/A:444@CG color #d783ff
#6/A:444@CD color #d783ff
#6/A:444@OE1 color #d783ff
#6/A:444@OE2 color #d783ff
#6/A:445@N color #d783ff
#6/A:445@CA color #d783ff
#6/A:445@C color #d783ff
#6/A:445@CB color #d783ff
#6/A:445@O color #d783ff
#6/A:445@CG1 color #d783ff
#6/A:445@CG2 color #d783ff
#6/A:446@N color #d783ff
#6/A:446@CA color #d783ff
#6/A:446@C color #d783ff
#6/A:446@CB color #d783ff
#6/A:446@O color #d783ff
#6/A:446@OG color #d783ff
#6/A:447@N color #d783ff
#6/A:447@CA color #d783ff
#6/A:447@C color #d783ff
#6/A:447@CB color #d783ff
#6/A:447@O color #d783ff
#6/A:447@CG1 color #d783ff
#6/A:447@CG2 color #d783ff
#6/A:447@CD1 color #d783ff
#6/A:448@N color #d783ff
#6/A:448@CA color #d783ff
#6/A:448@C color #d783ff
#6/A:448@CB color #d783ff
#6/A:448@O color #d783ff
#6/A:448@CG1 color #d783ff
#6/A:448@CG2 color #d783ff
#6/A:448@CD1 color #d783ff
#6/A:449@N color #d783ff
#6/A:449@CA color #d783ff
#6/A:449@C color #d783ff
#6/A:449@CB color #d783ff
#6/A:449@O color #d783ff
#6/A:449@CG color #d783ff
#6/A:449@CD color #d783ff
#6/A:449@NE color #d783ff
#6/A:449@NH1 color #d783ff
#6/A:449@NH2 color #d783ff
#6/A:449@CZ color #d783ff
#6/A:450@N color #d783ff
#6/A:450@CA color #d783ff
#6/A:450@C color #d783ff
#6/A:450@CB color #d783ff
#6/A:450@O color #d783ff
#6/A:450@CG color #d783ff
#6/A:450@SD color #d783ff
#6/A:450@CE color #d783ff
#6/A:451@N color #d783ff
#6/A:451@CA color #d783ff
#6/A:451@C color #d783ff
#6/A:451@CB color #d783ff
#6/A:451@O color #d783ff
#6/A:451@CG1 color #d783ff
#6/A:451@CG2 color #d783ff
#6/A:452@N color #d783ff
#6/A:452@CA color #d783ff
#6/A:452@C color #d783ff
#6/A:452@CB color #d783ff
#6/A:452@O color #d783ff
#6/A:452@CG color #d783ff
#6/A:452@CD color #d783ff
#6/A:452@NE color #d783ff
#6/A:452@NH1 color #d783ff
#6/A:452@NH2 color #d783ff
#6/A:452@CZ color #d783ff
#6/A:453@N color #d783ff
#6/A:453@CA color #d783ff
#6/A:453@C color #d783ff
#6/A:453@CB color #d783ff
#6/A:453@O color #d783ff
#6/A:453@CG color #d783ff
#6/A:453@ND2 color #d783ff
#6/A:453@OD1 color #d783ff
#6/A:454@N color #d783ff
#6/A:454@CA color #d783ff
#6/A:454@C color #d783ff
#6/A:454@O color #d783ff
#6/A:455@N color #d783ff
#6/A:455@CA color #d783ff
#6/A:455@C color #d783ff
#6/A:455@CB color #d783ff
#6/A:455@O color #d783ff
#6/A:455@CG color #d783ff
#6/A:455@CD color #d783ff
#6/A:455@NE color #d783ff
#6/A:455@NH1 color #d783ff
#6/A:455@NH2 color #d783ff
#6/A:455@CZ color #d783ff
#6/A:456@N color #d783ff
#6/A:456@CA color #d783ff
#6/A:456@C color #d783ff
#6/A:456@CB color #d783ff
#6/A:456@O color #d783ff
#6/A:456@CG color #d783ff
#6/A:456@ND2 color #d783ff
#6/A:456@OD1 color #d783ff
#6/A:457@N color #d783ff
#6/A:457@CA color #d783ff
#6/A:457@C color #d783ff
#6/A:457@CB color #d783ff
#6/A:457@O color #d783ff
#6/A:457@CG color #d783ff
#6/A:457@CD color #d783ff
#6/A:458@N color #d783ff
#6/A:458@CA color #d783ff
#6/A:458@C color #d783ff
#6/A:458@CB color #d783ff
#6/A:458@O color #d783ff
#6/A:458@SG color #d783ff
#6/A:459@N color #d783ff
#6/A:459@CA color #d783ff
#6/A:459@C color #d783ff
#6/A:459@CB color #d783ff
#6/A:459@O color #d783ff
#6/A:459@CG color #d783ff
#6/A:459@CD1 color #d783ff
#6/A:459@CD2 color #d783ff
#6/A:459@CE1 color #d783ff
#6/A:459@CE2 color #d783ff
#6/A:459@OH color #d783ff
#6/A:459@CZ color #d783ff
#6/A:460@N color #d783ff
#6/A:460@CA color #d783ff
#6/A:460@C color #d783ff
#6/A:460@CB color #d783ff
#6/A:460@O color #d783ff
#6/A:460@CG color #d783ff
#6/A:460@CD1 color #d783ff
#6/A:460@CD2 color #d783ff
#6/A:461@N color #d783ff
#6/A:461@CA color #d783ff
#6/A:461@C color #d783ff
#6/A:461@CB color #d783ff
#6/A:461@O color #d783ff
#6/A:461@CG color #d783ff
#6/A:461@SD color #d783ff
#6/A:461@CE color #d783ff
#6/A:462@N color #d783ff
#6/A:462@CA color #d783ff
#6/A:462@C color #d783ff
#6/A:462@CB color #d783ff
#6/A:462@O color #d783ff
#6/A:462@CG2 color #d783ff
#6/A:462@OG1 color #d783ff
#6/A:463@N color #d783ff
#6/A:463@CA color #d783ff
#6/A:463@C color #d783ff
#6/A:463@CB color #d783ff
#6/A:463@O color #d783ff
#6/A:463@CG color #d783ff
#6/A:463@CD1 color #d783ff
#6/A:463@CD2 color #d783ff
#6/A:463@CE1 color #d783ff
#6/A:463@CE2 color #d783ff
#6/A:463@OH color #d783ff
#6/A:463@CZ color #d783ff
#6/A:464@N color #d783ff
#6/A:464@CA color #d783ff
#6/A:464@C color #d783ff
#6/A:464@CB color #d783ff
#6/A:464@O color #d783ff
#6/A:464@CG2 color #d783ff
#6/A:464@OG1 color #d783ff
#6/A:465@N color #d783ff
#6/A:465@CA color #d783ff
#6/A:465@C color #d783ff
#6/A:465@CB color #d783ff
#6/A:465@O color #d783ff
#6/A:465@CG color #d783ff
#6/A:465@CD1 color #d783ff
#6/A:465@CD2 color #d783ff
#6/A:466@N color #d783ff
#6/A:466@CA color #d783ff
#6/A:466@C color #d783ff
#6/A:466@CB color #d783ff
#6/A:466@O color #d783ff
#6/A:466@CG color #d783ff
#6/A:466@ND2 color #d783ff
#6/A:466@OD1 color #d783ff
#6/A:467@N color #d783ff
#6/A:467@CA color #d783ff
#6/A:467@C color #d783ff
#6/A:467@CB color #d783ff
#6/A:467@O color #d783ff
#6/A:467@CG1 color #d783ff
#6/A:467@CG2 color #d783ff
#6/A:467@CD1 color #d783ff
#6/A:468@N color #d783ff
#6/A:468@CA color #d783ff
#6/A:468@C color #d783ff
#6/A:468@CB color #d783ff
#6/A:468@O color #d783ff
#6/A:468@CG color #d783ff
#6/A:468@CD2 color #d783ff
#6/A:468@ND1 color #d783ff
#6/A:468@CE1 color #d783ff
#6/A:468@NE2 color #d783ff
#6/A:469@N color #d783ff
#6/A:469@CA color #d783ff
#6/A:469@C color #d783ff
#6/A:469@CB color #d783ff
#6/A:469@O color #d783ff
#6/A:469@OG color #d783ff
#6/A:469@OXT color #d783ff
> view front
> show #!1 models
> color #1 #b2b2b280 models
Color zone shortcut requires 1 displayed atomic model and 1 map, got 14 atomic
models, 1 maps.
> select add #1
2 models selected
Color zone shortcut requires 1 displayed atomic model and 1 map, got 14 atomic
models, 1 maps.
> select subtract #1
Nothing selected
> select add #2
22191 atoms, 22621 bonds, 4 pseudobonds, 2810 residues, 2 models selected
> select add #3
30130 atoms, 30707 bonds, 4 pseudobonds, 3803 residues, 3 models selected
> select add #6
33934 atoms, 34606 bonds, 4 pseudobonds, 4272 residues, 4 models selected
> select add #9
44710 atoms, 45628 bonds, 4 pseudobonds, 5636 residues, 5 models selected
> select add #10
55486 atoms, 56650 bonds, 4 pseudobonds, 7000 residues, 6 models selected
> select add #11
66262 atoms, 67672 bonds, 4 pseudobonds, 8364 residues, 7 models selected
> select add #12
77038 atoms, 78694 bonds, 4 pseudobonds, 9728 residues, 8 models selected
> select add #13
87814 atoms, 89716 bonds, 4 pseudobonds, 11092 residues, 9 models selected
> select add #14
110005 atoms, 112337 bonds, 8 pseudobonds, 13902 residues, 11 models selected
> select add #15
163885 atoms, 167447 bonds, 8 pseudobonds, 20722 residues, 12 models selected
> select add #19
170792 atoms, 174516 bonds, 8 pseudobonds, 21592 residues, 13 models selected
> select add #23
178731 atoms, 182602 bonds, 8 pseudobonds, 22585 residues, 14 models selected
> select add #24
185638 atoms, 189671 bonds, 8 pseudobonds, 23455 residues, 15 models selected
> color zone #1 near sel distance 5
> color zone #1 near sel distance 7
> color zone #1 near sel distance 5
> color zone #1 near sel distance 7
> color zone #1 near sel distance 5
> color zone #1 near sel distance 7
> transparency 50
> ~select
Nothing selected
> ui mousemode right clip
> clip on
Expected a keyword
> clip back move 10
Invalid "back" argument: Expected 'off' or a number
> clip back front move 10
Invalid "back" argument: Expected 'off' or a number
> clip front move 10
Invalid "front" argument: Expected 'off' or a number
> clip front move 10
Invalid "front" argument: Expected 'off' or a number
> clip front 10
> clip front 1
> clip front -10
> clip front -5
> clip front -10
> clip front -15
> clip front -30
> clip front 5
> clip front -1
> clip front 1
> clip reset
Expected a keyword
> clip off
> select add #2
22191 atoms, 22621 bonds, 4 pseudobonds, 2810 residues, 2 models selected
> focus sel
Unknown command: focus sel
> focus #2
Unknown command: focus #2
> focus #2
Unknown command: focus #2
> focus atoms #2
Unknown command: focus atoms #2
> info version
Expected a models specifier or a keyword
> select subtract #2
Nothing selected
> view
> view front
> lighting soft
> lighting simple
> lighting soft
> lighting full
> lighting soft
> lighting full
> lighting soft
> lighting simple
> lighting soft
> lighting simple
> lighting soft
> graphics silhouettes false
> lighting full
> lighting soft
> lighting simple
> lighting soft
> graphics silhouettes true
> lighting soft
> select add #2
22191 atoms, 22621 bonds, 4 pseudobonds, 2810 residues, 2 models selected
> view sel
> clip off
> focus
Unknown command: focus
> view sel
> lighting soft
> ui mousemode right zone
> ui mousemode right clip
> ui mousemode right zone
> ui mousemode right clip
> ui tool show "Side View"
> select subtract #2
Nothing selected
> clip front -1
> clip off
> clip 1
Expected a keyword
> clip 1
Expected a keyword
> clip 1
Expected a keyword
> clip 1
Expected a keyword
> clip 1
Expected a keyword
> clip 1
Expected a keyword
> clip 1
Expected a keyword
> clip front 1
> clip off
> clip front -5
> clip front 1
> clip front -5
> clip front 1
> clip back -1
> clip back 1
> save
> /Users/z.kilic/Desktop/Chimeraimages/Zeynep_CPLplaygroundfigures/SCMC_upclose.png
> width 2000 height 1479 supersample 4
> view
> select add #2
22191 atoms, 22621 bonds, 4 pseudobonds, 2810 residues, 2 models selected
> view sel
> select subtract #2
Nothing selected
> save
> /Users/z.kilic/Desktop/Chimeraimages/Zeynep_CPLplaygroundfigures/SCMC_upclose.png
> width 2000 height 1479 supersample 4
> clip front
Missing "front" keyword's argument
> clip front
Missing "front" keyword's argument
> clip front
Missing "front" keyword's argument
> clip front 5
> clip front -0,5
Invalid "front" argument: Expected 'off' or a number
> clip front -0,5
Invalid "front" argument: Expected 'off' or a number
> clip front -0.5
> clip front 0.2
> clip front -0.2
> save
> /Users/z.kilic/Desktop/Chimeraimages/Zeynep_CPLplaygroundfigures/SCMC_upclose.png
> width 2000 height 1479 supersample 4
> clip front -5
> clip front -10
> clip front -15
> front view
Unknown command: front view
> view front
> save
> /Users/z.kilic/Desktop/Chimeraimages/Zeynep_CPLplaygroundfigures/SCMC_upclose.png
> width 2000 height 1479 supersample 4
> view front
> clip off
> transparency 20
> transparency 80
> transparency 60
> transparency 50
> transparency 60
> save
> /Users/z.kilic/Desktop/Chimeraimages/Zeynep_CPLplaygroundfigures/frontviewtransparent.png
> width 2000 height 1479 supersample 4
> ui mousemode right translate
> hide #6 models
> hide #19 models
> hide #!2 models
> hide #3 models
> hide #!14 models
> hide #15 models
> show #15 models
> hide #23 models
> hide #24 models
> hide #25 models
> hide #9 models
> hide #10 models
> hide #11 models
> hide #12 models
> show #12 models
> hide #12 models
> show #12 models
> hide #12 models
> show #12 models
> hide #12 models
> show #12 models
> hide #12 models
> show #12 models
> show #11 models
> show #10 models
> show #9 models
> show #!2 models
> hide #13 models
> hide #12 models
> hide #11 models
> hide #10 models
> hide #9 models
> hide #15 models
> ui mousemode right clip
> show #9 models
> hide #9 models
> show #9 models
> hide #9 models
> show #9 models
> hide #9 models
> show #9 models
> hide #9 models
> show #9 models
> hide #9 models
> show #9 models
> hide #9 models
> save
> /Users/z.kilic/Desktop/Chimeraimages/Zeynep_CPLplaygroundfigures/SCMC_upclose.png
> width 2000 height 1479 supersample 4
> hide #!2 models
> show #9 models
> show #10 models
> show #11 models
> show #12 models
> show #13 models
> clip bakc 5
Expected a keyword
> clip back 5
> clip back -5
> hide #10 models
> show #10 models
> hide #12 models
> show #12 models
> hide #13 models
> show #13 models
> hide #9 models
> show #9 models
> hide #9 models
> hide #10 models
> hide #11 models
> hide #12 models
> hide #13 models
> show #13 models
> show #12 models
> show #11 models
> show #10 models
> show #9 models
> color #10 F3BAC3
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword
> color #10 #F3BAC3
> color #10 #EA8695
> color #12 #EA8695
> save
> /Users/z.kilic/Desktop/Chimeraimages/Zeynep_CPLplaygroundfigures/PADI6_closeup.png
> width 2000 height 1479 supersample 4
> hide #13 models
> hide #12 models
> show #12 models
> hide #12 models
> show #12 models
> hide #12 models
> hide #11 models
> hide #10 models
> show #10 models
> hide #!1 models
> show #11 models
> hide #11 models
> show #11 models
> hide #11 models
> show #11 models
> hide #11 models
> show #11 models
> show #12 models
> show #13 models
> show #!14 models
> hide #!14 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> select add #13
10776 atoms, 11022 bonds, 1364 residues, 1 model selected
> select add #12
21552 atoms, 22044 bonds, 2728 residues, 2 models selected
> select add #11
32328 atoms, 33066 bonds, 4092 residues, 3 models selected
> select add #10
43104 atoms, 44088 bonds, 5456 residues, 4 models selected
> select add #9
53880 atoms, 55110 bonds, 6820 residues, 5 models selected
> select add #2
76071 atoms, 77731 bonds, 4 pseudobonds, 9630 residues, 7 models selected
> select add #19
82978 atoms, 84800 bonds, 4 pseudobonds, 10500 residues, 8 models selected
> show #25 models
> view front
> hide #9 models
> hide #10 models
> hide #11 models
> hide #12 models
> show #12 models
> show #11 models
> show #10 models
> show #9 models
> select subtract #2
60787 atoms, 62179 bonds, 7690 residues, 6 models selected
> select subtract #19
53880 atoms, 55110 bonds, 6820 residues, 5 models selected
> hide #25 models
> hide #!1 models
> show #!1 models
> select add #22
56347 atoms, 57635 bonds, 7133 residues, 6 models selected
> select subtract #22
53880 atoms, 55110 bonds, 6820 residues, 5 models selected
> clip off
> view front
> select add #25
57684 atoms, 59009 bonds, 7289 residues, 6 models selected
> select subtract #25
53880 atoms, 55110 bonds, 6820 residues, 5 models selected
> select add #22
56347 atoms, 57635 bonds, 7133 residues, 6 models selected
> select subtract #22
53880 atoms, 55110 bonds, 6820 residues, 5 models selected
> show #22 models
> show #!2 models
> show #25 models
> show #!14 models
> hide #!14 models
> show #!14 models
> hide #22 models
> hide #25 models
> hide #!2 models
> select subtract #9
43104 atoms, 44088 bonds, 5456 residues, 4 models selected
> select subtract #10
32328 atoms, 33066 bonds, 4092 residues, 3 models selected
> select subtract #11
21552 atoms, 22044 bonds, 2728 residues, 2 models selected
> select subtract #12
10776 atoms, 11022 bonds, 1364 residues, 1 model selected
> select subtract #13
Nothing selected
> hide #!1 models
> show #!2 models
> hide #!2 models
> hide #!14 models
> show #!1 models
> hide #13 models
> hide #12 models
> hide #11 models
> hide #10 models
> hide #9 models
> transparency 0
> view orient
> ui mousemode right "tape measure"
> marker segment #26 position 426.7,567,332.1 toPosition 573.1,426.8,332.1
> color yellow radius 0.53 label 202.8 labelHeight 20.28 labelColor yellow
> marker segment #26 position 454.9,195,330 toPosition 183.2,439.2,333.6 color
> yellow radius 0.53 label 365.4 labelHeight 36.54 labelColor yellow
> marker segment #26 position 88.29,174.1,331.1 toPosition 451.6,545.1,363.9
> color yellow radius 0.53 label 520.3 labelHeight 52.03 labelColor yellow
> marker segment #26 position 198.6,197.4,353.2 toPosition 431.9,439.1,359.5
> color yellow radius 0.53 label 336 labelHeight 33.6 labelColor yellow
> marker segment #26 position 177,234.9,405.3 toPosition 403.6,459.2,286.5
> color yellow radius 0.53 label 340.3 labelHeight 34.03 labelColor yellow
> ui mousemode right "tape measure"
> hide #!26 models
> show #!26 models
> hide #!26 models
> show #!26 models
> hide #!26 models
> show #!26 models
> hide #!26 models
===== Log before crash end =====
Log:
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 89.4
OpenGL renderer: Apple M3
OpenGL vendor: Apple
Python: 3.11.4
Locale: en_US.UTF-8
Qt version: PyQt6 6.7.1, Qt 6.7.1
Qt runtime version: 6.7.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Air
Model Identifier: Mac15,12
Model Number: Z1B8001YTN/A
Chip: Apple M3
Total Number of Cores: 8 (4 performance and 4 efficiency)
Memory: 16 GB
System Firmware Version: 11881.101.1
OS Loader Version: 11881.101.1
Software:
System Software Overview:
System Version: macOS 15.4.1 (24E263)
Kernel Version: Darwin 24.4.0
Time since boot: 7 days, 5 hours, 44 minutes
Graphics/Displays:
Apple M3:
Chipset Model: Apple M3
Type: GPU
Bus: Built-In
Total Number of Cores: 10
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-in Liquid Retina Display
Resolution: 2560 x 1664 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
S24R65x:
Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
UI Looks like: 1920 x 1080 @ 75.00Hz
Mirror: Off
Online: Yes
Rotation: Supported
Installed Packages:
alabaster: 1.0.0
anyio: 4.7.0
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 3.0.0
auditwheel: 6.1.0
babel: 2.16.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 3.0.0
build: 1.2.1
certifi: 2023.11.17
cftime: 1.6.4.post1
charset-normalizer: 3.4.0
ChimeraX-AddCharge: 1.5.18
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.16.1
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.58.8
ChimeraX-AtomicLibrary: 14.1.11
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.4.0
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.3
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.9
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.4
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.6
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.3
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.2.1
ChimeraX-Label: 1.1.14
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.6
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.2
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.2
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.18
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.14
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.6
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.2
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.6.2
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.6
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.14
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.0
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.18.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.41
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.3.1
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.9
decorator: 5.1.1
docutils: 0.21.2
executing: 2.1.0
filelock: 3.15.4
fonttools: 4.55.3
funcparserlib: 2.0.0a0
glfw: 2.8.0
grako: 3.16.5
h11: 0.14.0
h5py: 3.12.1
html2text: 2024.2.26
httpcore: 1.0.7
httpx: 0.28.1
idna: 3.10
ihm: 1.3
imagecodecs: 2024.6.1
imagesize: 1.4.1
ipykernel: 6.29.5
ipython: 8.26.0
ipywidgets: 8.1.5
jedi: 0.19.1
Jinja2: 3.1.4
jupyter_client: 8.6.2
jupyter_core: 5.7.2
jupyterlab_widgets: 3.0.13
kiwisolver: 1.4.7
line_profiler: 4.1.3
lxml: 5.2.2
lz4: 4.3.3
MarkupSafe: 3.0.2
matplotlib: 3.9.2
matplotlib-inline: 0.1.7
msgpack: 1.0.8
ndindex: 1.9.2
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.2
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.4.0
pip: 24.2
pkginfo: 1.11.1
platformdirs: 4.3.6
prompt_toolkit: 3.0.48
psutil: 6.0.0
ptyprocess: 0.7.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pyelftools: 0.31
Pygments: 2.18.0
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.2.0
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.7.1
PyQt6-Qt6: 6.7.3
PyQt6-WebEngine-commercial: 6.7.0
PyQt6-WebEngine-Qt6: 6.7.3
PyQt6-WebEngineSubwheel-Qt6: 6.7.3
PyQt6_sip: 13.8.0
python-dateutil: 2.9.0.post0
pytz: 2024.2
pyzmq: 26.2.0
qtconsole: 5.5.2
QtPy: 2.4.2
qtshim: 1.0
RandomWords: 0.4.0
requests: 2.32.3
scipy: 1.14.0
setuptools: 72.1.0
sfftk-rw: 0.8.1
six: 1.16.0
sniffio: 1.3.1
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.6
Sphinx: 8.0.2
sphinx-autodoc-typehints: 2.2.3
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.10.1
tcia_utils: 1.5.1
tifffile: 2024.7.24
tinyarray: 1.2.4
tornado: 6.4.2
traitlets: 5.14.3
typing_extensions: 4.12.2
tzdata: 2024.2
urllib3: 2.2.3
wcwidth: 0.2.13
webcolors: 24.6.0
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.13
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