| 1352 | | > view matrix models |
| 1353 | | > #3,0.1572,0.79158,0.5905,268.25,-0.72926,0.49624,-0.47109,336.96,-0.66593,-0.35657,0.65528,330.24> |
| 1354 | | > view matrix models |
| 1355 | | > #3,0.28322,0.87764,0.3867,271.44,-0.81992,0.43074,-0.37709,335.08,-0.49751,-0.21027,0.84159,330.87> |
| 1356 | | > view matrix models |
| 1357 | | > #3,-0.017812,0.84232,0.53868,265.04,-0.76613,0.33468,-0.54867,338.06,-0.64244,-0.42247,0.63937,331.27> |
| 1358 | | > view matrix models |
| 1359 | | > #3,-0.0031655,0.85903,0.51192,265.38,-0.72124,0.35264,-0.5962,339.1,-0.69268,-0.37111,0.61845,330.13> |
| 1360 | | > view matrix models |
| 1361 | | > #3,-0.27124,0.8759,0.39904,261.17,-0.68704,0.11416,-0.7176,342.39,-0.67409,-0.4688,0.57081,331.54> |
| 1362 | | > view matrix models |
| 1363 | | > #3,0.13566,0.93162,0.33715,268.69,-0.77565,0.31159,-0.54889,338.05,-0.61641,-0.18705,0.76489,329.08> |
| 1364 | | > select clear> select /A:7789 atoms, 8 bonds, 1 residue, 1 model selected |
| 1365 | | > select clear> select /A:19910 atoms, 10 bonds, 1 residue, 1 model selected |
| 1366 | | > select add /A:78015 atoms, 14 bonds, 2 residues, 1 model selected |
| 1367 | | > select up111 atoms, 110 bonds, 14 residues, 1 model selected |
| 1368 | | > select up9810 atoms, 10032 bonds, 1233 residues, 1 model selected |
| 1369 | | > select down111 atoms, 110 bonds, 14 residues, 1 model selected |
| 1370 | | > ui mousemode right "translate selected models"> view matrix models |
| 1371 | | > #3,0.13566,0.93162,0.33715,267.62,-0.77565,0.31159,-0.54889,339.05,-0.61641,-0.18705,0.76489,326.53> |
| 1372 | | > view matrix models |
| 1373 | | > #3,0.13566,0.93162,0.33715,263.83,-0.77565,0.31159,-0.54889,331.53,-0.61641,-0.18705,0.76489,323.99> |
| 1374 | | > view matrix models |
| 1375 | | > #3,0.13566,0.93162,0.33715,264.39,-0.77565,0.31159,-0.54889,331.73,-0.61641,-0.18705,0.76489,323.13> |
| 1376 | | > view matrix models |
| 1377 | | > #3,0.13566,0.93162,0.33715,264.12,-0.77565,0.31159,-0.54889,329.56,-0.61641,-0.18705,0.76489,322.14> |
| 1378 | | > ui mousemode right "rotate selected models"> view matrix models |
| 1379 | | > #3,0.27221,0.90106,0.33763,266.85,-0.73533,0.42111,-0.531,329.36,-0.62064,-0.10372,0.77721,321.36> |
| 1380 | | > view matrix models |
| 1381 | | > #3,0.2643,0.91061,0.31769,266.78,-0.70061,0.40766,-0.58563,330.5,-0.66279,-0.0678,0.74573,320.55> |
| 1382 | | > ui mousemode right "translate selected models"> view matrix models |
| 1383 | | > #3,0.2643,0.91061,0.31769,268.7,-0.70061,0.40766,-0.58563,332.37,-0.66279,-0.0678,0.74573,325.34> |
| 1384 | | > view matrix models |
| 1385 | | > #3,0.2643,0.91061,0.31769,268.14,-0.70061,0.40766,-0.58563,333.45,-0.66279,-0.0678,0.74573,326.51> |
| 1386 | | > ui mousemode right "rotate selected models"> view matrix models |
| 1387 | | > #3,0.41107,0.83158,0.37349,271.01,-0.59062,0.55504,-0.58574,334.38,-0.6944,0.02019,0.71931,325.47> |
| 1388 | | > ui mousemode right "translate selected models"> view matrix models |
| 1389 | | > #3,0.41107,0.83158,0.37349,268.91,-0.59062,0.55504,-0.58574,338.04,-0.6944,0.02019,0.71931,328.38> |
| 1390 | | > view matrix models |
| 1391 | | > #3,0.41107,0.83158,0.37349,266.29,-0.59062,0.55504,-0.58574,340.47,-0.6944,0.02019,0.71931,325.69> |
| 1392 | | > view matrix models |
| 1393 | | > #3,0.41107,0.83158,0.37349,266.62,-0.59062,0.55504,-0.58574,340.35,-0.6944,0.02019,0.71931,326.17> |
| 1394 | | > view matrix models |
| 1395 | | > #3,0.41107,0.83158,0.37349,266.32,-0.59062,0.55504,-0.58574,341.97,-0.6944,0.02019,0.71931,326.79> |
| 1396 | | > ui mousemode right "rotate selected models"> view matrix models |
| 1397 | | > #3,0.57049,0.67618,0.46618,269.71,-0.47052,0.73431,-0.4893,342.13,-0.67317,0.05979,0.73706,326.76> |
| 1398 | | > ui mousemode right "translate selected models"> view matrix models |
| 1399 | | > #3,0.57049,0.67618,0.46618,257.51,-0.47052,0.73431,-0.4893,347.5,-0.67317,0.05979,0.73706,322.97> |
| 1400 | | > view matrix models |
| 1401 | | > #3,0.57049,0.67618,0.46618,259.1,-0.47052,0.73431,-0.4893,342.4,-0.67317,0.05979,0.73706,325.89> |
| 1402 | | > view matrix models |
| 1403 | | > #3,0.57049,0.67618,0.46618,263.37,-0.47052,0.73431,-0.4893,342.64,-0.67317,0.05979,0.73706,327.49> |
| 1404 | | > view matrix models |
| 1405 | | > #3,0.57049,0.67618,0.46618,262.68,-0.47052,0.73431,-0.4893,346.65,-0.67317,0.05979,0.73706,329> |
| 1406 | | > ui mousemode right "rotate selected models"> view matrix models |
| 1407 | | > #3,0.57248,0.67477,0.46578,262.74,-0.49429,0.73727,-0.46055,345.97,-0.65417,0.033424,0.75561,329.4> |
| 1408 | | > view matrix models |
| 1409 | | > #3,0.63127,0.69884,0.33633,264.6,-0.52003,0.70313,-0.48495,345.94,-0.57539,0.13123,0.80729,329.74> |
| 1410 | | > ui mousemode right "translate selected models"> view matrix models |
| 1411 | | > #3,0.63127,0.69884,0.33633,266.39,-0.52003,0.70313,-0.48495,345.55,-0.57539,0.13123,0.80729,331.04> |
| 1412 | | > view matrix models |
| 1413 | | > #3,0.63127,0.69884,0.33633,268.56,-0.52003,0.70313,-0.48495,343.51,-0.57539,0.13123,0.80729,331.68> |
| 1414 | | > ui mousemode right "rotate selected models"> view matrix models |
| 1415 | | > #3,0.6514,0.67692,0.34272,269.04,-0.52428,0.7281,-0.4416,342.92,-0.54846,0.10797,0.82918,332.18> |
| 1416 | | > view matrix models |
| 1417 | | > #3,0.59614,0.71527,0.3647,267.58,-0.54988,0.69472,-0.46367,342.86,-0.58502,0.075871,0.80746,331.91> |
| 1418 | | > view matrix models |
| 1419 | | > #3,0.71756,0.63247,0.2917,270.97,-0.45126,0.74119,-0.49699,344.58,-0.53053,0.22499,0.81726,331.73> |
| 1420 | | > view matrix models |
| 1421 | | > #3,0.7144,0.66742,0.2102,271.25,-0.51692,0.70585,-0.48432,343.54,-0.47161,0.23735,0.84927,332.49> |
| 1422 | | > view matrix models |
| 1423 | | > #3,0.73441,0.65932,0.16107,272.04,-0.52134,0.69996,-0.48813,343.53,-0.43457,0.27451,0.85778,332.83> |
| 1424 | | > ui mousemode right "translate selected models"> view matrix models |
| 1425 | | > #3,0.73441,0.65932,0.16107,274.91,-0.52134,0.69996,-0.48813,343.26,-0.43457,0.27451,0.85778,335.65> |
| 1426 | | > view matrix models |
| 1427 | | > #3,0.73441,0.65932,0.16107,274.57,-0.52134,0.69996,-0.48813,341.68,-0.43457,0.27451,0.85778,338> |
| 1428 | | > view matrix models |
| 1429 | | > #3,0.73441,0.65932,0.16107,275.14,-0.52134,0.69996,-0.48813,341.4,-0.43457,0.27451,0.85778,337.25> |
| 1430 | | > ui mousemode right "rotate selected models"> view matrix models |
| 1431 | | > #3,0.7541,0.63707,0.15963,275.68,-0.50041,0.71476,-0.48858,341.68,-0.42536,0.28856,0.85779,337.31> |
| 1432 | | > view matrix models |
| 1433 | | > #3,0.74291,0.63667,0.20673,275.12,-0.46536,0.71322,-0.52417,342.6,-0.48117,0.29321,0.82614,336.49> |
| 1434 | | > view matrix models |
| 1435 | | > #3,0.80342,0.55155,0.22432,276.74,-0.39022,0.77229,-0.50129,343.37,-0.44972,0.31521,0.8357,336.83> |
| 1436 | | > ui mousemode right "translate selected models"> view matrix models |
| 1437 | | > #3,0.80342,0.55155,0.22432,271.95,-0.39022,0.77229,-0.50129,347.63,-0.44972,0.31521,0.8357,338.54> |
| 1438 | | > view matrix models |
| 1439 | | > #3,0.80342,0.55155,0.22432,271.53,-0.39022,0.77229,-0.50129,347.65,-0.44972,0.31521,0.8357,339.94> |
| 1440 | | > view matrix models |
| 1441 | | > #3,0.80342,0.55155,0.22432,271.45,-0.39022,0.77229,-0.50129,347.37,-0.44972,0.31521,0.8357,339.41> |
| 1442 | | > ui mousemode right "rotate selected models"> view matrix models |
| 1443 | | > #3,0.87916,0.44751,0.16375,274.06,-0.32398,0.81332,-0.48327,348.15,-0.34945,0.37182,0.86002,340.65> |
| 1444 | | > view matrix models |
| 1445 | | > #3,0.8903,0.43345,0.1396,274.55,-0.32015,0.81379,-0.48502,348.23,-0.32383,0.38712,0.86329,340.98> |
| 1446 | | > ui mousemode right "translate selected models"> view matrix models |
| 1447 | | > #3,0.8903,0.43345,0.1396,274.05,-0.32015,0.81379,-0.48502,351.03,-0.32383,0.38712,0.86329,342.82> |
| 1448 | | > ui mousemode right "rotate selected models"> view matrix models |
| 1449 | | > #3,0.90023,0.42579,0.091041,274.64,-0.30651,0.76821,-0.56205,352.19,-0.30925,0.47807,0.82208,342.72> |
| 1450 | | > ui mousemode right "translate selected models"> view matrix models |
| 1451 | | > #3,0.90023,0.42579,0.091041,276.29,-0.30651,0.76821,-0.56205,352.94,-0.30925,0.47807,0.82208,345.52> |
| 1452 | | > view matrix models |
| 1453 | | > #3,0.90023,0.42579,0.091041,276.64,-0.30651,0.76821,-0.56205,351.93,-0.30925,0.47807,0.82208,348.52> |
| 1454 | | > view matrix models |
| 1455 | | > #3,0.90023,0.42579,0.091041,276.5,-0.30651,0.76821,-0.56205,353.45,-0.30925,0.47807,0.82208,349.29> |
| 1456 | | > ui mousemode right "rotate selected models"> view matrix models |
| 1457 | | > #3,0.90732,0.40924,0.096353,276.71,-0.27468,0.75051,-0.60107,354.45,-0.3183,0.5189,0.79337,349.04> |
| 1458 | | > ui mousemode right "translate selected models"> view matrix models |
| 1459 | | > #3,0.90732,0.40924,0.096353,276.03,-0.27468,0.75051,-0.60107,353.78,-0.3183,0.5189,0.79337,350.72> |
| 1460 | | > view matrix models |
| 1461 | | > #3,0.90732,0.40924,0.096353,275.78,-0.27468,0.75051,-0.60107,353.7,-0.3183,0.5189,0.79337,350.42> |
| 1462 | | > ui mousemode right "rotate selected models"> view matrix models |
| 1463 | | > #3,0.86593,0.44239,0.23337,273.76,-0.19734,0.73091,-0.65332,355.65,-0.4596,0.51967,0.72021,348.36> |
| 1464 | | > view matrix models |
| 1465 | | > #3,0.87467,0.42973,0.22423,274.08,-0.18031,0.71787,-0.67242,356.2,-0.44993,0.54772,0.70538,348.44> |
| 1466 | | > ui mousemode right "translate selected models"> view matrix models |
| 1467 | | > #3,0.87467,0.42973,0.22423,274.15,-0.18031,0.71787,-0.67242,356.66,-0.44993,0.54772,0.70538,349.67> |
| 1468 | | > view matrix models |
| 1469 | | > #3,0.87467,0.42973,0.22423,273.1,-0.18031,0.71787,-0.67242,357.41,-0.44993,0.54772,0.70538,350.66> |
| 1470 | | > ui mousemode right "rotate selected models"> view matrix models |
| 1471 | | > #3,0.8751,0.43332,0.2155,273.15,-0.20188,0.73155,-0.65121,356.76,-0.43983,0.52637,0.72766,350.84> |
| 1472 | | > ui mousemode right "translate selected models"> view matrix models |
| 1473 | | > #3,0.8751,0.43332,0.2155,271.79,-0.20188,0.73155,-0.65121,356.91,-0.43983,0.52637,0.72766,350.01> |
| 1474 | | > view matrix models |
| 1475 | | > #3,0.8751,0.43332,0.2155,271.87,-0.20188,0.73155,-0.65121,357.52,-0.43983,0.52637,0.72766,349.85> |
| 1476 | | > select clear> select #12 models selected |
| 1477 | | > select clear> hide #!1 models> select /A:7826 atoms, 5 bonds, 1 residue, 1 |
| 1478 | | > model selected |
| 1479 | | > select /A:6409 atoms, 8 bonds, 1 residue, 1 model selected |
| 1480 | | > select add /A:77818 atoms, 16 bonds, 2 residues, 1 model selected |
| 1481 | | > select clearDrag select of 3 residues |
| 1482 | | > select up63 atoms, 62 bonds, 8 residues, 1 model selected |
| 1483 | | > select up9810 atoms, 10032 bonds, 1233 residues, 1 model selected |
| 1484 | | > select down63 atoms, 62 bonds, 8 residues, 1 model selected |
| 1485 | | > select down23 atoms, 3 residues, 1 model selected |
| 1486 | | > select up63 atoms, 62 bonds, 8 residues, 1 model selected |
| 1487 | | > select down23 atoms, 3 residues, 1 model selected |
| 1488 | | > select #3:200-300832 atoms, 855 bonds, 101 residues, 1 model selected |
| 1489 | | > select #3:626-7831252 atoms, 1269 bonds, 158 residues, 1 model selected |
| 1490 | | > volume #1 level 0.003653> volume #1 level 0.006521> volume #1 level |
| 1491 | | > 0.007524> fitmap sel inMap #1Fit molecule AlphaFold F8WHL2 (#3) to map |
| 1492 | | > postprocess.mrc (#1) using 1252 atoms |
| 1493 | | average map value = 0.008076, steps = 68 |
| 1494 | | shifted from previous position = 0.881 |
| 1495 | | rotated from previous position = 5.6 degrees |
| 1496 | | atoms outside contour = 530, contour level = 0.0075244 |
| 1497 | | |
| 1498 | | Position of AlphaFold F8WHL2 (#3) relative to postprocess.mrc (#1) |
| 1499 | | coordinates: |
| 1500 | | Matrix rotation and translation |
| 1501 | | 0.91479768 0.37496522 0.15015414 272.72163633 |
| 1502 | | -0.20072021 0.74461830 -0.63659640 357.53578289 |
| 1503 | | -0.35050903 0.55221794 0.75643820 352.78881648 |
| 1504 | | Axis 0.84159616 0.35443398 -0.40754442 |
| 1505 | | Axis point 0.00000000 -509.89936941 647.89739820 |
| 1506 | | Rotation angle (degrees) 44.93349247 |
| 1507 | | Shift along axis 212.46720010 |
| 1508 | | |
| 1509 | | > volume #1 level 0.008672> volume #1 level 0.009102> select clear> select |
| 1510 | | > /A:6037 atoms, 7 bonds, 1 residue, 1 model selected |
| 1511 | | Drag select of 598 residues |
| 1512 | | > ui tool show "Fit in Map"> fitmap sel inMap #1 moveWholeMolecules falseFit |
| 1513 | | > molecule AlphaFold F8WHL2 (#3) to map postprocess.mrc (#1) using 4818 atoms |
| 1514 | | average map value = 0.007747, steps = 96 |
| 1515 | | shifted from previous position = 11.7 |
| 1516 | | rotated from previous position = 23.8 degrees |
| 1517 | | atoms outside contour = 3249, contour level = 0.0091018 |
| 1518 | | |
| 1519 | | > show #!1 models> select clear> ui tool show AlphaFoldFetching compressed |
| 1520 | | > O55029 UniProt info from https://www.uniprot.org/uniprot/O55029.xml |
| 1521 | | > alphafold match O55029Fetching compressed AlphaFold O55029 from |
| 1522 | | > https://alphafold.ebi.ac.uk/files/AF-O55029-F1-model_v4.cif |
| 1523 | | 1 AlphaFold model found using UniProt identifier: O55029 (UniProt O55029) |
| 1524 | | | Sequence Similarity |
| 1525 | | --- |
| 1526 | | AlphaFold Model| Query Sequence| Identity %| Coverage % |
| 1527 | | O55029 | O55029 | 100.0 | 100.0 |
| 1528 | | Opened 1 AlphaFold model |
| 1529 | | Drag select of 905 residues |
| 1530 | | > rename #3 "acop F8WHL2"> rename #4 "b1cop O55029"> ui mousemode right |
| 1531 | | > "translate selected models"> view matrix models |
| 1532 | | > #4,1,0,0,370.38,0,1,0,247.17,0,0,1,216.75> view matrix models |
| 1533 | | > #4,1,0,0,335.12,0,1,0,270.36,0,0,1,361.07> view matrix models |
| 1534 | | > #4,1,0,0,277,0,1,0,291.15,0,0,1,334.99> ui mousemode right "rotate selected |
| 1535 | | > models"> view matrix models |
| 1536 | | > #4,0.90253,0.38282,0.1972,270.62,0.033459,-0.51889,0.85418,271.85,0.42933,-0.76433,-0.48113,377.38> |
| 1537 | | > view matrix models |
| 1538 | | > #4,0.77302,-0.058303,-0.63169,290.22,0.58343,-0.32566,0.74401,280.54,-0.2491,-0.94369,-0.21773,363.43> |
| 1539 | | > view matrix models |
| 1540 | | > #4,0.074915,0.65545,-0.75151,284.66,0.23799,0.7201,0.65178,277.9,0.96837,-0.22768,-0.10205,373.44> |
| 1541 | | > view matrix models |
| 1542 | | > #4,0.24709,0.54101,-0.8039,288,0.57248,-0.75086,-0.32936,307.53,-0.7818,-0.37884,-0.49524,363.79> |
| 1543 | | > view matrix models |
| 1544 | | > #4,0.45878,-0.60051,-0.65491,287.84,0.77685,-0.086693,0.62369,285.45,-0.43131,-0.79491,0.42673,345.23> |
| 1545 | | > view matrix models |
| 1546 | | > #4,-0.15329,-0.58727,-0.79475,284.45,0.83983,-0.50125,0.20841,296.9,-0.52076,-0.6355,0.57004,340.5> |
| 1547 | | > view matrix models |
| 1548 | | > #4,0.11761,-0.10952,-0.987,291.77,0.62392,-0.76509,0.15924,295.98,-0.77258,-0.63454,-0.021653,352.39> |
| 1549 | | > view matrix models |
| 1550 | | > #4,0.34012,-0.0025252,-0.94038,292.99,0.60524,-0.76477,0.22096,294.24,-0.71973,-0.6443,-0.25858,358.87> |
| 1551 | | > view matrix models |
| 1552 | | > #4,0.32988,-0.012843,-0.94393,292.98,0.59671,-0.77198,0.21904,294.19,-0.73152,-0.63551,-0.247,358.45> |
| 1553 | | > ui mousemode right "translate selected models"> view matrix models |
| 1554 | | > #4,0.32988,-0.012843,-0.94393,312.66,0.59671,-0.77198,0.21904,304.98,-0.73152,-0.63551,-0.247,365.85> |
| 1555 | | > fitmap sel inMap #1Fit molecule b1cop O55029 (#4) to map postprocess.mrc |
| 1556 | | > (#1) using 7214 atoms |
| 1557 | | average map value = 0.008522, steps = 168 |
| 1558 | | shifted from previous position = 20.5 |
| 1559 | | rotated from previous position = 49.4 degrees |
| 1560 | | atoms outside contour = 3879, contour level = 0.0091018 |
| 1561 | | |
| 1562 | | Position of b1cop O55029 (#4) relative to postprocess.mrc (#1) coordinates: |
| 1563 | | Matrix rotation and translation |
| 1564 | | -0.17500586 -0.17837291 -0.96827478 300.31538503 |
| 1565 | | -0.01101922 -0.98303557 0.18308371 289.63776415 |
| 1566 | | -0.98450572 0.04271036 0.17007146 350.80591372 |
| 1567 | | Axis -0.64087816 0.07410279 0.76405756 |
| 1568 | | Axis point 287.13093608 140.83628611 0.00000000 |
| 1569 | | Rotation angle (degrees) 173.71256043 |
| 1570 | | Shift along axis 97.03330679 |
| 1571 | | |
| 1572 | | > select clear> volume #1 level 0.005373> volume #1 level 0.003509> volume #1 |
| 1573 | | > level 0.01125> ui tool show AlphaFoldFetching compressed Q9JIF7 UniProt info |
| 1574 | | > from https://www.uniprot.org/uniprot/Q9JIF7.xml |
| 1575 | | > alphafold match Q9JIF7Fetching compressed AlphaFold Q9JIF7 from |
| 1576 | | > https://alphafold.ebi.ac.uk/files/AF-Q9JIF7-F1-model_v4.cif |
| 1577 | | 1 AlphaFold model found using UniProt identifier: Q9JIF7 (UniProt Q9JIF7) |
| 1578 | | | Sequence Similarity |
| 1579 | | --- |
| 1580 | | AlphaFold Model| Query Sequence| Identity %| Coverage % |
| 1581 | | Q9JIF7 | Q9JIF7 | 100.0 | 100.0 |
| 1582 | | Opened 1 AlphaFold model |
| 1583 | | > select add #57501 atoms, 7619 bonds, 953 residues, 1 model selected |
| 1584 | | > ui mousemode right "translate selected models"> view matrix models |
| 1585 | | > #5,1,0,0,271.36,0,1,0,317.01,0,0,1,50.878> view matrix models |
| 1586 | | > #5,1,0,0,318.9,0,1,0,281.77,0,0,1,334.98> view matrix models |
| 1587 | | > #5,1,0,0,278.73,0,1,0,199.54,0,0,1,360.27> ui mousemode right "rotate |
| 1588 | | > selected models"> view matrix models |
| 1589 | | > #5,0.88745,-0.36435,-0.28227,281.8,0.44595,0.52412,0.72555,194.37,-0.11641,-0.76977,0.62761,364.88> |
| 1590 | | > view matrix models |
| 1591 | | > #5,0.67107,0.33535,0.66121,275.67,-0.73977,0.24385,0.62712,201.35,0.049071,-0.90999,0.41172,365.68> |
| 1592 | | > view matrix models |
| 1593 | | > #5,0.017555,0.80719,0.59003,278.07,-0.79428,0.36969,-0.48212,207.72,-0.60729,-0.46019,0.64763,366.37> |
| 1594 | | > view matrix models |
| 1595 | | > #5,-0.10559,0.20105,0.97387,277.94,-0.90536,-0.42452,-0.010521,207.48,0.41131,-0.88281,0.22685,364.93> |
| 1596 | | > view matrix models |
| 1597 | | > #5,-0.55224,-0.11726,0.8254,281.74,-0.42401,0.89195,-0.15697,202.76,-0.71781,-0.43666,-0.54229,373.73> |
| 1598 | | > view matrix models |
| 1599 | | > #5,-0.594,-0.055194,0.80257,281.92,-0.10836,0.99404,-0.01184,200.15,-0.79713,-0.094001,-0.59644,373.58> |
| 1600 | | > view matrix models |
| 1601 | | > #5,-0.48192,-0.54854,0.68327,283.28,-0.30994,0.8361,0.45263,198.82,-0.81957,0.0063597,-0.57294,373.31> |
| 1602 | | > view matrix models |
| 1603 | | > #5,-0.16222,-0.5084,0.84571,280.7,-0.39977,0.81743,0.41472,199.52,-0.90215,-0.27081,-0.33585,373.02> |
| 1604 | | > view matrix models |
| 1605 | | > #5,-0.1128,-0.50446,0.85603,280.39,-0.47173,0.78544,0.4007,200.03,-0.8745,-0.35862,-0.32656,373.05> |
| 1606 | | > view matrix models |
| 1607 | | > #5,0.025474,-0.37173,0.92799,278.98,-0.34416,0.86829,0.35726,199.46,-0.93857,-0.32848,-0.10581,372> |
| 1608 | | > view matrix models |
| 1609 | | > #5,0.33949,-0.64321,0.68632,279.53,-0.36106,0.58464,0.72652,198.11,-0.86855,-0.49445,-0.033758,371.66> |
| 1610 | | > ui mousemode right "translate selected models"> view matrix models |
| 1611 | | > #5,0.33949,-0.64321,0.68632,276.35,-0.36106,0.58464,0.72652,288.45,-0.86855,-0.49445,-0.033758,402.83> |
| 1612 | | > view matrix models |
| 1613 | | > #5,0.33949,-0.64321,0.68632,250.38,-0.36106,0.58464,0.72652,309,-0.86855,-0.49445,-0.033758,398.1> |
| 1614 | | > view matrix models |
| 1615 | | > #5,0.33949,-0.64321,0.68632,285.01,-0.36106,0.58464,0.72652,319.3,-0.86855,-0.49445,-0.033758,353.89> |
| 1616 | | > view matrix models |
| 1617 | | > #5,0.33949,-0.64321,0.68632,283.3,-0.36106,0.58464,0.72652,331.55,-0.86855,-0.49445,-0.033758,349.45> |
| 1618 | | > hide #5 models> hide #4 models> view matrix models |
| 1619 | | > #5,0.33949,-0.64321,0.68632,279.14,-0.36106,0.58464,0.72652,302.8,-0.86855,-0.49445,-0.033758,343.44> |
| 1620 | | > show #5 models> show #4 models> hide #3 models> hide #4 models> view matrix |
| 1621 | | > models |
| 1622 | | > #5,0.33949,-0.64321,0.68632,270.08,-0.36106,0.58464,0.72652,305.66,-0.86855,-0.49445,-0.033758,339.27> |
| 1623 | | > view matrix models |
| 1624 | | > #5,0.33949,-0.64321,0.68632,273.26,-0.36106,0.58464,0.72652,296.36,-0.86855,-0.49445,-0.033758,339.61> |
| 1625 | | > ui mousemode right "rotate selected models"> view matrix models |
| 1626 | | > #5,0.1583,-0.75472,0.63666,274.7,-0.22837,0.59932,0.76724,295.45,-0.96062,-0.26685,-0.077487,339.75> |
| 1627 | | > view matrix models |
| 1628 | | > #5,0.31702,-0.77002,0.55368,274.45,-0.044004,0.57122,0.81961,294.32,-0.9474,-0.2842,0.14721,338.42> |
| 1629 | | > view matrix models |
| 1630 | | > #5,-0.1688,-0.83643,0.52143,277.15,0.15518,0.49987,0.85209,293.35,-0.97336,0.22475,0.045415,337.89> |
| 1631 | | > view matrix models |
| 1632 | | > #5,-0.29859,-0.756,0.5825,277.22,-0.055259,0.62302,0.78026,294.48,-0.95278,0.20079,-0.2278,339.43> |
| 1633 | | > view matrix models |
| 1634 | | > #5,-0.31587,-0.77827,0.54269,277.59,0.0031861,0.5711,0.82087,294.09,-0.9488,0.26102,-0.17791,338.97> |
| 1635 | | > ui mousemode right "translate selected models"> view matrix models |
| 1636 | | > #5,-0.31587,-0.77827,0.54269,293.23,0.0031861,0.5711,0.82087,320.12,-0.9488,0.26102,-0.17791,348.52> |
| 1637 | | > ui mousemode right "rotate selected models"> view matrix models |
| 1638 | | > #5,-0.22491,-0.76691,0.60105,292.43,-0.062203,0.62689,0.77662,320.56,-0.97239,0.13728,-0.1887,349> |
| 1639 | | > view matrix models |
| 1640 | | > #5,-0.22093,-0.79312,0.56759,292.67,-0.096038,0.59683,0.7966,320.68,-0.97055,0.12149,-0.20803,349.14> |
| 1641 | | > fitmap sel inMap #1Fit molecule AlphaFold Q9JIF7 (#5) to map postprocess.mrc |
| 1642 | | > (#1) using 7501 atoms |
| 1643 | | average map value = 0.00647, steps = 148 |
| 1644 | | shifted from previous position = 5.87 |
| 1645 | | rotated from previous position = 8.11 degrees |
| 1646 | | atoms outside contour = 6135, contour level = 0.011253 |
| 1647 | | |
| 1648 | | Position of AlphaFold Q9JIF7 (#5) relative to postprocess.mrc (#1) |
| 1649 | | coordinates: |
| 1650 | | Matrix rotation and translation |
| 1651 | | -0.12743314 -0.78566653 0.60538327 287.87538541 |
| 1652 | | -0.18888952 0.61841267 0.76281486 319.45283965 |
| 1653 | | -0.97369479 -0.01714266 -0.22721044 353.10812983 |
| 1654 | | Axis -0.41943118 0.84916750 0.32092374 |
| 1655 | | Axis point 330.24827580 0.00000000 -43.29109963 |
| 1656 | | Rotation angle (degrees) 111.59943904 |
| 1657 | | Shift along axis 263.84583665 |
| 1658 | | |
| 1659 | | > view matrix models |
| 1660 | | > #5,-0.11909,-0.79329,0.59708,287.9,-0.21644,0.60764,0.76415,319.6,-0.969,-0.03823,-0.24407,353.23> |
| 1661 | | > view matrix models |
| 1662 | | > #5,-0.13997,-0.7806,0.60915,287.9,-0.23845,0.62368,0.74443,319.79,-0.96101,-0.041054,-0.27343,353.37> |
| 1663 | | > fitmap sel inMap #1Fit molecule AlphaFold Q9JIF7 (#5) to map postprocess.mrc |
| 1664 | | > (#1) using 7501 atoms |
| 1665 | | average map value = 0.00647, steps = 84 |
| 1666 | | shifted from previous position = 0.25 |
| 1667 | | rotated from previous position = 3.09 degrees |
| 1668 | | atoms outside contour = 6133, contour level = 0.011253 |
| 1669 | | |
| 1670 | | Position of AlphaFold Q9JIF7 (#5) relative to postprocess.mrc (#1) |
| 1671 | | coordinates: |
| 1672 | | Matrix rotation and translation |
| 1673 | | -0.12796009 -0.78606814 0.60475043 287.89645555 |
| 1674 | | -0.18929672 0.61791074 0.76312062 319.45704475 |
| 1675 | | -0.97354659 -0.01682829 -0.22786803 353.09674124 |
| 1676 | | Axis -0.41957740 0.84905276 0.32103617 |
| 1677 | | Axis point 330.19750182 0.00000000 -43.20868706 |
| 1678 | | Rotation angle (degrees) 111.65141172 |
| 1679 | | Shift along axis 263.79786166 |
| 1680 | | |
| 1681 | | > view matrix models |
| 1682 | | > #5,-0.013632,-0.77278,0.63452,287.14,-0.21506,0.622,0.75291,319.63,-0.97651,-0.1262,-0.17467,353.07> |
| 1683 | | > view matrix models |
| 1684 | | > #5,-0.041711,-0.77488,0.63073,287.3,-0.1704,0.62755,0.7597,319.36,-0.98449,-0.075789,-0.15822,352.89> |
| 1685 | | > ui mousemode right "translate selected models"> view matrix models |
| 1686 | | > #5,-0.041711,-0.77488,0.63073,290,-0.1704,0.62755,0.7597,317.67,-0.98449,-0.075789,-0.15822,354.39> |
| 1687 | | > view matrix models |
| 1688 | | > #5,-0.041711,-0.77488,0.63073,290,-0.1704,0.62755,0.7597,318.98,-0.98449,-0.075789,-0.15822,355> |
| 1689 | | > view matrix models |
| 1690 | | > #5,-0.041711,-0.77488,0.63073,288.25,-0.1704,0.62755,0.7597,313.73,-0.98449,-0.075789,-0.15822,356.75> |
| 1691 | | > view matrix models |
| 1692 | | > #5,-0.041711,-0.77488,0.63073,287.59,-0.1704,0.62755,0.7597,314.9,-0.98449,-0.075789,-0.15822,356.71> |
| 1693 | | > ui mousemode right "rotate selected models"> view matrix models |
| 1694 | | > #5,-0.055916,-0.77902,0.6245,287.71,-0.13246,0.62573,0.76871,314.67,-0.98961,-0.03974,-0.13818,356.53> |
| 1695 | | > ui mousemode right "translate selected models"> view matrix models |
| 1696 | | > #5,-0.055916,-0.77902,0.6245,286.88,-0.13246,0.62573,0.76871,316.68,-0.98961,-0.03974,-0.13818,356.49> |
| 1697 | | > view matrix models |
| 1698 | | > #5,-0.055916,-0.77902,0.6245,286.02,-0.13246,0.62573,0.76871,317.58,-0.98961,-0.03974,-0.13818,355.6> |
| 1699 | | > ui mousemode right "translate selected models"> view matrix models |
| 1700 | | > #5,-0.055916,-0.77902,0.6245,282.11,-0.13246,0.62573,0.76871,313.86,-0.98961,-0.03974,-0.13818,352.7> |
| 1701 | | > ui mousemode right "rotate selected models"> view matrix models |
| 1702 | | > #5,-0.12597,-0.76708,0.62907,282.39,-0.15988,0.64153,0.75025,314.06,-0.97906,-0.0060659,-0.20346,352.94> |
| 1703 | | > view matrix models |
| 1704 | | > #5,-0.11811,-0.76841,0.62896,282.36,-0.16267,0.63981,0.75112,314.07,-0.97959,-0.013602,-0.20056,352.94> |
| 1705 | | > hide #!1 models> select clear> select #5/A:2486 atoms, 5 bonds, 1 residue, 1 |
| 1706 | | > model selected |
| 1707 | | > select add #5/A:61913 atoms, 11 bonds, 2 residues, 1 model selected |
| 1708 | | > select #3:248-6192987 atoms, 3052 bonds, 372 residues, 1 model selected |
| 1709 | | > select #5:248-6192917 atoms, 2955 bonds, 372 residues, 1 model selected |
| 1710 | | > fitmap sel inMap #1Fit molecule AlphaFold Q9JIF7 (#5) to map postprocess.mrc |
| 1711 | | > (#1) using 2917 atoms |
| 1712 | | average map value = 0.008991, steps = 92 |
| 1713 | | shifted from previous position = 1.33 |
| 1714 | | rotated from previous position = 9.66 degrees |
| 1715 | | atoms outside contour = 1911, contour level = 0.011253 |
| 1716 | | |
| 1717 | | Position of AlphaFold Q9JIF7 (#5) relative to postprocess.mrc (#1) |
| 1718 | | coordinates: |
| 1719 | | Matrix rotation and translation |
| 1720 | | 0.04538395 -0.75064039 0.65915044 284.75500060 |
| 1721 | | -0.14313055 0.64813639 0.74795244 314.22146667 |
| 1722 | | -0.98866270 -0.12828960 -0.07802459 347.64202153 |
| 1723 | | Axis -0.44644928 0.83956824 0.30952901 |
| 1724 | | Axis point 359.26930118 0.00000000 -77.14856130 |
| 1725 | | Rotation angle (degrees) 101.08424479 |
| 1726 | | Shift along axis 244.28698872 |
| 1727 | | |
| 1728 | | > show #!1 models> hide #!1 models> select clear[Repeated 2 time(s)]> select |
| 1729 | | > #5/A:6257 atoms, 7 bonds, 1 residue, 1 model selected |
| 1730 | | > select #5/A:66111 atoms, 10 bonds, 1 residue, 1 model selected |
| 1731 | | > select #5:625-661304 atoms, 305 bonds, 37 residues, 1 model selected |
| 1732 | | > fitmap sel inMap #1Fit molecule AlphaFold Q9JIF7 (#5) to map postprocess.mrc |
| 1733 | | > (#1) using 304 atoms |
| 1734 | | average map value = 0.008099, steps = 96 |
| 1735 | | shifted from previous position = 3.7 |
| 1736 | | rotated from previous position = 18.7 degrees |
| 1737 | | atoms outside contour = 241, contour level = 0.011253 |
| 1738 | | |
| 1739 | | Position of AlphaFold Q9JIF7 (#5) relative to postprocess.mrc (#1) |
| 1740 | | coordinates: |
| 1741 | | Matrix rotation and translation |
| 1742 | | -0.02186533 -0.51118779 0.85919087 281.99306344 |
| 1743 | | -0.21164457 0.84228549 0.49574360 318.48989776 |
| 1744 | | -0.97710208 -0.17100349 -0.12660697 349.71050382 |
| 1745 | | Axis -0.33735033 0.92909895 0.15155822 |
| 1746 | | Axis point 342.36646040 0.00000000 -20.66281678 |
| 1747 | | Rotation angle (degrees) 98.80623687 |
| 1748 | | Shift along axis 253.77967932 |
| 1749 | | |
| 1750 | | > select up220 atoms, 219 bonds, 27 residues, 1 model selected |
| 1751 | | > select up7501 atoms, 7619 bonds, 953 residues, 1 model selected |
| 1752 | | > select up24525 atoms, 25024 bonds, 3091 residues, 7 models selected |
| 1753 | | > select #5:248-6192917 atoms, 2955 bonds, 372 residues, 1 model selected |
| 1754 | | > fitmap sel inMap #1Fit molecule AlphaFold Q9JIF7 (#5) to map postprocess.mrc |
| 1755 | | > (#1) using 2917 atoms |
| 1756 | | average map value = 0.008992, steps = 92 |
| 1757 | | shifted from previous position = 3.51 |
| 1758 | | rotated from previous position = 18.7 degrees |
| 1759 | | atoms outside contour = 1915, contour level = 0.011253 |
| 1760 | | |
| 1761 | | Position of AlphaFold Q9JIF7 (#5) relative to postprocess.mrc (#1) |
| 1762 | | coordinates: |
| 1763 | | Matrix rotation and translation |
| 1764 | | 0.04673051 -0.75025969 0.65948969 284.75211128 |
| 1765 | | -0.14540060 0.64807045 0.74757164 314.20252886 |
| 1766 | | -0.98826865 -0.13082460 -0.07880354 347.60466200 |
| 1767 | | Axis -0.44752446 0.83949831 0.30816302 |
| 1768 | | Axis point 359.78743319 0.00000000 -76.92474568 |
| 1769 | | Rotation angle (degrees) 101.06960017 |
| 1770 | | Shift along axis 243.45786006 |
| 1771 | | |
| 1772 | | > show #!1 models> ui tool show "Fit in Map"> select #5:625-661304 atoms, 305 |
| 1773 | | > bonds, 37 residues, 1 model selected |
| 1774 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9JIF7 |
| 1775 | | > (#5) to map postprocess.mrc (#1) using 304 atoms |
| 1776 | | average map value = 0.008098, steps = 108 |
| 1777 | | shifted from previous position = 3.71 |
| 1778 | | rotated from previous position = 18.9 degrees |
| 1779 | | atoms outside contour = 242, contour level = 0.011253 |
| 1780 | | |
| 1781 | | > select clear> select add #5/A:2556 atoms, 5 bonds, 1 residue, 1 model |
| 1782 | | > selected |
| 1783 | | > hide #!1 models> select add #5/A:82714 atoms, 12 bonds, 2 residues, 1 model |
| 1784 | | > selected |
| 1785 | | > select #5/A:2556 atoms, 5 bonds, 1 residue, 1 model selected |
| 1786 | | > select clear[Repeated 1 time(s)]> select add #5/A:82912 atoms, 12 bonds, 1 |
| 1787 | | > residue, 1 model selected |
| 1788 | | > select clear[Repeated 1 time(s)]> select #5/A:2566 atoms, 5 bonds, 1 |
| 1789 | | > residue, 1 model selected |
| 1790 | | > select #5/A:199 atoms, 8 bonds, 1 residue, 1 model selected |
| 1791 | | > select #5:19-2561934 atoms, 1972 bonds, 238 residues, 1 model selected |
| 1792 | | > ui tool show "Fit in Map"> fitmap sel inMap #1 moveWholeMolecules falseFit |
| 1793 | | > molecule AlphaFold Q9JIF7 (#5) to map postprocess.mrc (#1) using 1934 atoms |
| 1794 | | average map value = 0.009335, steps = 84 |
| 1795 | | shifted from previous position = 9.44 |
| 1796 | | rotated from previous position = 19.9 degrees |
| 1797 | | atoms outside contour = 1289, contour level = 0.011253 |
| 1798 | | |
| 1799 | | > show #!1 models> hide #5 models> volume #1 level 0.007811> show #5 models> |
| 1800 | | > show #4 models> show #3 models> volume #1 level 0.009245> volume #1 level |
| 1801 | | > 0.005087> volume #1 level 0.009389> hide #3 models> hide #4 models> hide #5 |
| 1802 | | > models> volume #1 level 0.007955> volume #1 level 0.006951> ui tool show |
| 1803 | | > AlphaFoldFetching compressed P84078 UniProt info from |
| 1804 | | > https://www.uniprot.org/uniprot/P84078.xml |
| 1805 | | > alphafold match P84078Fetching AlphaFold database settings from |
| 1806 | | > https://www.rbvi.ucsf.edu/chimerax/data/status/alphafold_database3.json |
| 1807 | | Fetching compressed AlphaFold P84078 from |
| 1808 | | https://alphafold.ebi.ac.uk/files/AF-P84078-F1-model_v4.cif |
| 1809 | | 1 AlphaFold model found using UniProt identifier: P84078 (UniProt P84078) |
| 1810 | | | Sequence Similarity |
| 1811 | | --- |
| 1812 | | AlphaFold Model| Query Sequence| Identity %| Coverage % |
| 1813 | | P84078 | P84078 | 100.0 | 100.0 |
| 1814 | | Opened 1 AlphaFold model |
| 1815 | | > select add #63391 atoms, 3455 bonds, 419 residues, 2 models selected |
| 1816 | | > ui mousemode right "translate selected models"[Repeated 1 time(s)]> view |
| 1817 | | > matrix models |
| 1818 | | > #5,0.046731,-0.75026,0.65949,358.15,-0.1454,0.64807,0.74757,273.41,-0.98827,-0.13082,-0.078804,676.69,#6,1,0,0,73.4,0,1,0,-40.79,0,0,1,329.09> |
| 1819 | | > view matrix models |
| 1820 | | > #5,0.046731,-0.75026,0.65949,488.25,-0.1454,0.64807,0.74757,635.09,-0.98827,-0.13082,-0.078804,585.3,#6,1,0,0,203.5,0,1,0,320.89,0,0,1,237.7> |
| 1821 | | > view matrix models |
| 1822 | | > #5,0.046731,-0.75026,0.65949,509.25,-0.1454,0.64807,0.74757,660.67,-0.98827,-0.13082,-0.078804,614.35,#6,1,0,0,224.5,0,1,0,346.47,0,0,1,266.74> |
| 1823 | | > view matrix models |
| 1824 | | > #5,0.046731,-0.75026,0.65949,505.66,-0.1454,0.64807,0.74757,658.86,-0.98827,-0.13082,-0.078804,611.53,#6,1,0,0,220.91,0,1,0,344.66,0,0,1,263.93> |
| 1825 | | > ui mousemode right "rotate selected models"> view matrix models |
| 1826 | | > #5,-0.45029,0.28448,0.84635,697.73,-0.88308,-0.28199,-0.37504,549.91,0.13197,-0.91627,0.3782,425.79,#6,0.32368,0.88255,0.34109,209.69,-0.077031,-0.33472,0.93916,350.56,0.94303,-0.33026,-0.040359,275.06> |
| 1827 | | > view matrix models |
| 1828 | | > #5,-0.64611,0.34327,0.6817,701.97,-0.72307,-0.56124,-0.40271,497.44,0.24436,-0.75311,0.61083,465.1,#6,0.16184,0.82603,0.5399,208.67,0.12171,-0.55964,0.81975,353.67,0.97928,-0.066957,-0.1911,273.71> |
| 1829 | | > volume #1 level 0.008815> volume #1 level 0.007668> ui mousemode right |
| 1830 | | > "rotate selected models"> view matrix models |
| 1831 | | > #5,-0.37127,-0.68688,0.62479,642.13,-0.38801,-0.49655,-0.77646,224.25,0.84357,-0.5307,-0.082162,-39.636,#6,0.91003,0.07591,0.40754,217.48,-0.15766,-0.84584,0.5096,357.76,0.38339,-0.52801,-0.75777,280.5> |
| 1832 | | > view matrix models |
| 1833 | | > #5,0.46673,-0.10013,0.87871,396.42,-0.88433,-0.065543,0.46224,863.68,0.01131,-0.99281,-0.11914,280.92,#6,0.67644,0.52415,-0.5174,218.96,0.3127,0.43167,0.8461,344.9,0.66683,-0.73412,0.1281,277.17> |
| 1834 | | > view matrix models |
| 1835 | | > #5,0.55973,-0.02731,0.82823,337.98,-0.72757,-0.49463,0.47539,837.56,0.39668,-0.86868,-0.29673,62.067,#6,0.59285,0.52008,-0.61485,219.48,0.65061,0.14062,0.74628,348.7,0.47458,-0.84246,-0.255,280.27> |
| 1836 | | > view matrix models |
| 1837 | | > #5,0.55281,-0.035838,0.83254,342.74,-0.74921,-0.45875,0.47773,844.23,0.36481,-0.88784,-0.28045,81.337,#6,0.60177,0.51878,-0.60724,219.46,0.62423,0.16877,0.76279,348.3,0.4982,-0.83809,-0.22227,280.06> |
| 1838 | | > view matrix models |
| 1839 | | > #5,0.017758,-0.75813,0.65186,513.84,-0.92289,-0.26324,-0.28102,600.1,0.38465,-0.59661,-0.70435,-109.32,#6,0.99952,-0.0065926,0.030264,220.78,-0.030955,-0.24649,0.96865,349.66,0.0010739,-0.96912,-0.24658,280.59> |
| 1840 | | > view matrix models |
| 1841 | | > #5,-0.97931,-0.10943,0.17021,653.05,-0.17636,0.049126,-0.9831,32.019,0.099216,-0.99278,-0.067408,268.73,#6,0.14859,0.19872,0.96873,211.56,-0.69344,-0.67746,0.24534,357.06,0.70502,-0.70821,0.03714,277.58> |
| 1842 | | > view matrix models |
| 1843 | | > #5,-0.86351,0.34359,0.36917,660.07,-0.32165,0.18859,-0.92789,98.453,-0.38844,-0.91999,-0.052331,449.68,#6,-0.054673,0.62421,0.77934,208.61,-0.76845,-0.52468,0.36633,354.79,0.63757,-0.57886,0.50836,273.31> |
| 1844 | | > view matrix models |
| 1845 | | > #5,-0.848,0.34752,0.40014,666.2,-0.34914,0.20172,-0.9151,112.75,-0.39874,-0.91572,-0.049725,454.23,#6,-0.036469,0.64766,0.76106,208.54,-0.77116,-0.50261,0.39077,354.43,0.6356,-0.57265,0.51778,273.19> |
| 1846 | | > ui mousemode right "translate selected models"> view matrix models |
| 1847 | | > #5,-0.848,0.34752,0.40014,675.82,-0.34914,0.20172,-0.9151,66.483,-0.39874,-0.91572,-0.049725,473.97,#6,-0.036469,0.64766,0.76106,218.16,-0.77116,-0.50261,0.39077,308.16,0.6356,-0.57265,0.51778,292.93> |
| 1848 | | > ui mousemode right "translate selected models"> view matrix models |
| 1849 | | > #5,-0.848,0.34752,0.40014,688.49,-0.34914,0.20172,-0.9151,71.033,-0.39874,-0.91572,-0.049725,471.57,#6,-0.036469,0.64766,0.76106,230.83,-0.77116,-0.50261,0.39077,312.71,0.6356,-0.57265,0.51778,290.53> |
| 1850 | | > view matrix models |
| 1851 | | > #5,-0.848,0.34752,0.40014,693.85,-0.34914,0.20172,-0.9151,69.786,-0.39874,-0.91572,-0.049725,472.74,#6,-0.036469,0.64766,0.76106,236.19,-0.77116,-0.50261,0.39077,311.46,0.6356,-0.57265,0.51778,291.69> |
| 1852 | | > fitmap sel inMap #1Fit molecules AlphaFold Q9JIF7 (#5), AlphaFold P84078 |
| 1853 | | > (#6) to map postprocess.mrc (#1) using 3391 atoms |
| 1854 | | average map value = 0.006422, steps = 2000 |
| 1855 | | shifted from previous position = 223 |
| 1856 | | rotated from previous position = 48.9 degrees |
| 1857 | | atoms outside contour = 2952, contour level = 0.0076678 |
| 1858 | | |
| 1859 | | Position of AlphaFold Q9JIF7 (#5) relative to postprocess.mrc (#1) |
| 1860 | | coordinates: |
| 1861 | | Matrix rotation and translation |
| 1862 | | -0.78544199 -0.47592112 0.39570188 715.46000326 |
| 1863 | | -0.51313102 0.14321967 -0.84627696 160.72942314 |
| 1864 | | 0.34608878 -0.86774836 -0.35670063 67.50377065 |
| 1865 | | Axis -0.32716750 0.75597252 -0.56698058 |
| 1866 | | Axis point 392.31439396 0.00000000 86.79523471 |
| 1867 | | Rotation angle (degrees) 178.11955374 |
| 1868 | | Shift along axis -150.84155657 |
| 1869 | | |
| 1870 | | Position of AlphaFold P84078 (#6) relative to postprocess.mrc (#1) |
| 1871 | | coordinates: |
| 1872 | | Matrix rotation and translation |
| 1873 | | 0.58132163 0.10158882 0.80730717 237.38423842 |
| 1874 | | -0.68954175 -0.46522666 0.55506427 310.31035722 |
| 1875 | | 0.43196914 -0.87934286 -0.20039659 290.45018442 |
| 1876 | | Axis -0.85352803 0.22334073 -0.47075346 |
| 1877 | | Axis point -0.00000000 238.34586381 -38.53694803 |
| 1878 | | Rotation angle (degrees) 122.83017374 |
| 1879 | | Shift along axis -270.03958986 |
| 1880 | | |
| 1881 | | > ui mousemode right "rotate selected models"> view matrix models |
| 1882 | | > #5,-0.82136,-0.26559,0.50481,758.27,-0.56919,0.43962,-0.69481,222.17,-0.037383,-0.85802,-0.51225,147.42,#6,0.4938,0.32468,0.80669,235.24,-0.81465,-0.15176,0.55975,307.26,0.30416,-0.93357,0.18956,288.25> |
| 1883 | | > view matrix models |
| 1884 | | > #5,-0.49775,-0.37352,0.78277,754.22,-0.85254,0.37659,-0.36242,460.08,-0.15941,-0.84774,-0.50589,194.2,#6,0.7732,0.41548,0.47909,236.96,-0.56139,0.097083,0.82183,303.76,0.29494,-0.90441,0.30831,287.21> |
| 1885 | | > ui mousemode right "translate selected models"> view matrix models |
| 1886 | | > #5,-0.49775,-0.37352,0.78277,752.99,-0.85254,0.37659,-0.36242,463.44,-0.15941,-0.84774,-0.50589,195.37,#6,0.7732,0.41548,0.47909,235.74,-0.56139,0.097083,0.82183,307.12,0.29494,-0.90441,0.30831,288.38> |
| 1887 | | > ui mousemode right "rotate selected models"> view matrix models |
| 1888 | | > #5,-0.38026,-0.5892,0.71291,695.78,-0.92487,0.23958,-0.29532,524.71,0.0031968,-0.77165,-0.63604,80.022,#6,0.89444,0.2064,0.39671,238.34,-0.41773,0.068975,0.90595,307.07,0.15963,-0.97603,0.14791,289.82> |
| 1889 | | > view matrix models |
| 1890 | | > #5,-0.5285,-0.28376,0.80011,765.54,-0.81897,0.41863,-0.39249,436.75,-0.22357,-0.86269,-0.45363,240.31,#6,0.71586,0.49108,0.49637,234.85,-0.61119,0.096966,0.78552,307.27,0.33763,-0.8657,0.36956,287.71> |
| 1891 | | > view matrix models |
| 1892 | | > #5,-0.51604,-0.53596,0.66817,725.04,-0.85145,0.23586,-0.4684,430.37,0.093449,-0.81062,-0.57806,71.813,#6,0.81865,0.22719,0.52745,237.2,-0.52565,-0.073503,0.84752,308.55,0.23132,-0.97107,0.059251,290.46> |
| 1893 | | > view matrix models |
| 1894 | | > #5,0.13499,-0.86453,0.48411,433.78,-0.94222,-0.26318,-0.20726,596.47,0.30659,-0.42816,-0.85011,-136.41,#6,0.9742,-0.218,-0.058457,245.19,0.01674,-0.1885,0.98193,309.61,-0.22508,-0.95757,-0.17999,291.12> |
| 1895 | | > view matrix models |
| 1896 | | > #5,-0.2051,-0.47242,0.85718,680.36,-0.97757,0.056064,-0.20301,591.45,0.047851,-0.87959,-0.47332,133.72,#6,0.91015,0.36446,0.19695,238.22,-0.22163,0.026705,0.97477,307.33,0.35001,-0.93083,0.10508,290> |
| 1897 | | > ui mousemode right "translate selected models"> view matrix models |
| 1898 | | > #5,-0.2051,-0.47242,0.85718,680.48,-0.97757,0.056064,-0.20301,589.73,0.047851,-0.87959,-0.47332,130.59,#6,0.91015,0.36446,0.19695,238.33,-0.22163,0.026705,0.97477,305.62,0.35001,-0.93083,0.10508,286.87> |
| 1899 | | > view matrix models |
| 1900 | | > #5,-0.2051,-0.47242,0.85718,679,-0.97757,0.056064,-0.20301,590.84,0.047851,-0.87959,-0.47332,131,#6,0.91015,0.36446,0.19695,236.86,-0.22163,0.026705,0.97477,306.72,0.35001,-0.93083,0.10508,287.28> |
| 1901 | | > view matrix models |
| 1902 | | > #5,-0.2051,-0.47242,0.85718,679.45,-0.97757,0.056064,-0.20301,594.98,0.047851,-0.87959,-0.47332,131.08,#6,0.91015,0.36446,0.19695,237.31,-0.22163,0.026705,0.97477,310.86,0.35001,-0.93083,0.10508,287.36> |
| 1903 | | > ui mousemode right "rotate selected models"> view matrix models |
| 1904 | | > #5,-0.95483,-0.2827,0.091546,645.11,0.025199,-0.384,-0.92299,-28.007,0.29608,-0.87899,0.37378,370.13,#6,0.22785,0.02406,0.9734,234.31,-0.31943,-0.94252,0.098068,325,0.91981,-0.33327,-0.20707,284.9> |
| 1905 | | > view matrix models |
| 1906 | | > #5,-0.84993,0.079467,-0.52086,345.21,0.34319,-0.66661,-0.6617,-25.719,-0.3998,-0.74116,0.5393,682.44,#6,-0.44284,-0.2143,0.87061,236.02,0.079783,-0.97658,-0.19981,327.86,0.89304,-0.019022,0.44957,277.85> |
| 1907 | | > view matrix models |
| 1908 | | > #5,-0.98119,0.14656,-0.12566,543.59,0.028815,-0.53242,-0.84599,9.8618,-0.19089,-0.8337,0.51818,602.99,#6,-0.23868,0.14371,0.96041,232.56,-0.15712,-0.98167,0.10784,325.56,0.9583,-0.12516,0.25688,280.14> |
| 1909 | | > ui mousemode right "translate selected models"> view matrix models |
| 1910 | | > #5,-0.98119,0.14656,-0.12566,550.85,0.028815,-0.53242,-0.84599,-0.71247,-0.19089,-0.8337,0.51818,614.04,#6,-0.23868,0.14371,0.96041,239.82,-0.15712,-0.98167,0.10784,314.99,0.9583,-0.12516,0.25688,291.19> |
| 1911 | | > ui mousemode right "rotate selected models"> view matrix models |
| 1912 | | > #5,-0.98945,0.13416,0.054668,625.01,-0.078216,-0.17707,-0.98108,-35.936,-0.12194,-0.97501,0.1857,467.66,#6,-0.11084,0.27168,0.95598,238.91,-0.51782,-0.83681,0.17778,312.65,0.84828,-0.47532,0.23344,294.31> |
| 1913 | | > view matrix models |
| 1914 | | > #5,-0.97538,0.074364,0.20762,683.2,-0.21728,-0.16286,-0.96243,21.676,-0.037756,-0.98384,0.17501,433.03,#6,0.035553,0.34523,0.93785,238.6,-0.52267,-0.79344,0.31188,311.4,0.85179,-0.50128,0.15223,295.07> |
| 1915 | | > view matrix models |
| 1916 | | > #5,-0.94584,-0.32042,-0.052228,595.3,-0.02913,0.24399,-0.96934,-75.412,0.32334,-0.91531,-0.24011,133.88,#6,0.16175,-0.10917,0.98077,242.62,-0.82369,-0.56229,0.073256,310.34,0.54349,-0.8197,-0.18088,299.55> |
| 1917 | | > view matrix models |
| 1918 | | > #5,-0.95651,-0.28552,-0.059666,594.18,-0.02128,0.27232,-0.96197,-77.176,0.29091,-0.91887,-0.26655,135.73,#6,0.13016,-0.090561,0.98735,242.36,-0.83971,-0.53957,0.061211,310.19,0.5272,-0.83706,-0.14628,299.46> |
| 1919 | | > ui mousemode right "translate selected models"> view matrix models |
| 1920 | | > #5,-0.95651,-0.28552,-0.059666,584.96,-0.02128,0.27232,-0.96197,-73.984,0.29091,-0.91887,-0.26655,126.76,#6,0.13016,-0.090561,0.98735,233.14,-0.83971,-0.53957,0.061211,313.38,0.5272,-0.83706,-0.14628,290.49> |
| 1921 | | > view matrix models |
| 1922 | | > #5,-0.95651,-0.28552,-0.059666,586.7,-0.02128,0.27232,-0.96197,-73.161,0.29091,-0.91887,-0.26655,127.44,#6,0.13016,-0.090561,0.98735,234.88,-0.83971,-0.53957,0.061211,314.21,0.5272,-0.83706,-0.14628,291.18> |
| 1923 | | > view matrix models |
| 1924 | | > #5,-0.95651,-0.28552,-0.059666,586.01,-0.02128,0.27232,-0.96197,-72.51,0.29091,-0.91887,-0.26655,126.77,#6,0.13016,-0.090561,0.98735,234.19,-0.83971,-0.53957,0.061211,314.86,0.5272,-0.83706,-0.14628,290.5> |
| 1925 | | > view matrix models |
| 1926 | | > #5,-0.95651,-0.28552,-0.059666,586.93,-0.02128,0.27232,-0.96197,-70.705,0.29091,-0.91887,-0.26655,125.92,#6,0.13016,-0.090561,0.98735,235.11,-0.83971,-0.53957,0.061211,316.66,0.5272,-0.83706,-0.14628,289.65> |
| 1927 | | > fitmap sel inMap #1Fit molecules AlphaFold Q9JIF7 (#5), AlphaFold P84078 |
| 1928 | | > (#6) to map postprocess.mrc (#1) using 3391 atoms |
| 1929 | | average map value = 0.006833, steps = 2000 |
| 1930 | | shifted from previous position = 35.4 |
| 1931 | | rotated from previous position = 6.86 degrees |
| 1932 | | atoms outside contour = 2846, contour level = 0.0076678 |
| 1933 | | |
| 1934 | | Position of AlphaFold Q9JIF7 (#5) relative to postprocess.mrc (#1) |
| 1935 | | coordinates: |
| 1936 | | Matrix rotation and translation |
| 1937 | | -0.96231226 -0.25463330 -0.09548300 575.09609390 |
| 1938 | | 0.04958688 0.18092578 -0.98224590 -102.68057512 |
| 1939 | | 0.26738785 -0.94996197 -0.16148063 179.64811468 |
| 1940 | | Axis 0.06802008 -0.76454471 0.64097164 |
| 1941 | | Axis point 280.58340423 0.00000000 90.80899720 |
| 1942 | | Rotation angle (degrees) 166.27206933 |
| 1943 | | Shift along axis 232.77132307 |
| 1944 | | |
| 1945 | | Position of AlphaFold P84078 (#6) relative to postprocess.mrc (#1) |
| 1946 | | coordinates: |
| 1947 | | Matrix rotation and translation |
| 1948 | | 0.08310170 -0.09647993 0.99185973 236.97187835 |
| 1949 | | -0.78120515 -0.62425648 0.00472976 314.26811764 |
| 1950 | | 0.61871854 -0.77523898 -0.12724739 291.28053862 |
| 1951 | | Axis -0.70718474 0.33832095 -0.62082902 |
| 1952 | | Axis point 0.00000000 243.78687797 -42.59228603 |
| 1953 | | Rotation angle (degrees) 146.53274098 |
| 1954 | | Shift along axis -242.09482207 |
| 1955 | | |
| 1956 | | > ui mousemode right "rotate selected models"> view matrix models |
| 1957 | | > #5,0.59055,-0.24829,-0.76786,-259.42,0.70109,-0.31337,0.64052,321.03,-0.39966,-0.9166,-0.010989,481.93,#6,-0.29252,-0.8208,-0.49063,252.32,0.69029,0.17381,-0.70235,314,0.66176,-0.54412,0.51575,285.18> |
| 1958 | | > view matrix models |
| 1959 | | > #5,0.7237,0.28678,-0.62771,-286.79,0.30928,-0.94789,-0.07649,224.72,-0.61694,-0.13878,-0.77468,215.99,#6,-0.59531,-0.38863,-0.70326,249.29,0.67517,-0.71645,-0.17562,318.62,-0.4356,-0.57937,0.6889,282.6> |
| 1960 | | > view matrix models |
| 1961 | | > #5,0.48684,0.83037,0.27104,117.52,0.74137,-0.22872,-0.63092,-195.07,-0.4619,0.5081,-0.72697,137.6,#6,-0.4215,0.66998,-0.61112,239.46,-0.20984,-0.72768,-0.65303,320.32,-0.88222,-0.14701,0.4473,279.52> |
| 1962 | | > view matrix models |
| 1963 | | > #5,-0.1243,0.97397,-0.18956,154,0.87072,0.19868,0.44985,152.58,0.4758,-0.10914,-0.87275,-226.48,#6,-0.86155,0.50756,0.010362,236.25,0.1883,0.33845,-0.92195,313.09,-0.47145,-0.79236,-0.38717,291.31> |
| 1964 | | > view matrix models |
| 1965 | | > #5,-0.11846,0.94765,0.29653,343.11,0.9592,0.18642,-0.21256,-137.68,-0.25671,0.25925,-0.93107,-2.2351,#6,-0.52096,0.85304,-0.030271,233.95,-0.23522,-0.17756,-0.95559,317.26,-0.82053,-0.49071,0.29315,283.69> |
| 1966 | | > view matrix models |
| 1967 | | > #5,0.38244,0.69187,-0.61242,-180.16,-0.34259,0.72174,0.60144,626.22,0.85812,-0.020207,0.51305,167.91,#6,-0.90509,-0.065052,-0.42021,244.07,-0.16086,0.96717,0.19675,299.74,0.39361,0.24568,-0.88584,286.56> |
| 1968 | | > view matrix models |
| 1969 | | > #5,-0.010124,0.85975,0.51061,392.17,0.13388,-0.50488,0.85275,624.51,0.99095,0.076994,-0.10999,-130.07,#6,-0.30877,0.94037,-0.14271,234.23,0.94742,0.29083,-0.13346,309.74,-0.083995,-0.17641,-0.98073,290.18> |
| 1970 | | > view matrix models |
| 1971 | | > #5,-0.47691,0.62752,0.61544,619.28,0.80676,0.034608,0.58987,240.89,0.34886,0.77783,-0.52276,-97.925,#6,-0.087213,0.93611,0.34072,231.55,0.40075,0.3461,-0.8483,312.9,-0.91203,0.06256,-0.40533,283.01> |
| 1972 | | > view matrix models |
| 1973 | | > #5,-0.26096,0.59122,0.76313,599.62,0.96303,0.10471,0.2482,45.716,0.066835,0.79969,-0.59668,-24.265,#6,0.047515,0.99159,0.12042,232.68,0.13013,0.11338,-0.98499,315.42,-0.99036,0.062472,-0.12365,281.09> |
| 1974 | | > view matrix models |
| 1975 | | > #5,-0.95651,0.065195,0.28433,701.4,0.28764,0.048556,0.95651,574.22,0.048553,0.99669,-0.065196,177.67,#6,0.093902,0.39389,0.91435,233.07,0.60782,0.7047,-0.36599,306.94,-0.7885,0.59013,-0.17324,276.99> |
| 1976 | | > view matrix models |
| 1977 | | > #5,-0.4407,0.038915,0.89681,752.05,0.84001,-0.33436,0.4273,187.99,0.31649,0.94164,0.11467,152.57,#6,0.54165,0.75973,0.35977,234.04,0.57191,-0.019389,-0.82008,316.29,-0.61606,0.64995,-0.445,278.47> |
| 1978 | | > view matrix models |
| 1979 | | > #5,0.015963,0.0070203,0.99985,626.06,0.36125,-0.93247,0.00077988,234.78,0.93233,0.36118,-0.017421,-89.91,#6,0.65487,0.74969,-0.095485,237.22,0.71699,-0.65625,-0.23508,318.53,-0.2389,0.085485,-0.96727,287.49> |
| 1980 | | > view matrix models |
| 1981 | | > #5,-0.060137,0.76102,0.64593,469.47,-0.21824,-0.64147,0.73545,716.84,0.97404,-0.096742,0.20466,9.6358,#6,-0.14779,0.98482,-0.09103,233.76,0.95609,0.16581,0.24165,308.49,0.25307,-0.051321,-0.96609,289.51> |
| 1982 | | > view matrix models |
| 1983 | | > #5,0.42809,0.027838,0.90331,435.35,0.79791,-0.48097,-0.36332,-95.922,0.42435,0.8763,-0.22811,-16.842,#6,0.59484,0.63108,-0.4979,240.75,0.15853,-0.69933,-0.697,320.95,-0.78806,0.33567,-0.51603,281.47> |
| 1984 | | > view matrix models |
| 1985 | | > #5,0.2184,0.60798,0.76332,422.15,0.74111,-0.61222,0.27558,182.36,0.63487,0.50552,-0.58429,-210.44,#6,0.057465,0.9329,-0.35553,236.25,0.6757,-0.2985,-0.67404,318.04,-0.73494,-0.2015,-0.64751,287.22> |
| 1986 | | > fitmap sel inMap #1Fit molecules AlphaFold Q9JIF7 (#5), AlphaFold P84078 |
| 1987 | | > (#6) to map postprocess.mrc (#1) using 3391 atoms |
| 1988 | | average map value = 0.006369, steps = 2000 |
| 1989 | | shifted from previous position = 47.6 |
| 1990 | | rotated from previous position = 11.7 degrees |
| 1991 | | atoms outside contour = 2902, contour level = 0.0076678 |
| 1992 | | |
| 1993 | | Position of AlphaFold Q9JIF7 (#5) relative to postprocess.mrc (#1) |
| 1994 | | coordinates: |
| 1995 | | Matrix rotation and translation |
| 1996 | | 0.30252382 0.72278836 0.62133431 332.10274732 |
| 1997 | | 0.73609320 -0.59129658 0.32944673 198.61776044 |
| 1998 | | 0.60551312 0.35769448 -0.71092090 -235.47233701 |
| 1999 | | Axis 0.80699148 0.45198534 0.38009736 |
| 2000 | | Axis point 0.00000000 8.13542212 -195.52778063 |
| 2001 | | Rotation angle (degrees) 178.99716459 |
| 2002 | | Shift along axis 268.27399044 |
| 2003 | | |
| 2004 | | Position of AlphaFold P84078 (#6) relative to postprocess.mrc (#1) |
| 2005 | | coordinates: |
| 2006 | | Matrix rotation and translation |
| 2007 | | -0.11837831 0.88892254 -0.44249665 240.32340880 |
| 2008 | | 0.69529073 -0.24394520 -0.67606327 312.28320062 |
| 2009 | | -0.70891281 -0.38769505 -0.58918178 293.00918140 |
| 2010 | | Axis 0.65874746 0.60860025 -0.44233191 |
| 2011 | | Axis point 0.00000000 12.35318661 242.25345413 |
| 2012 | | Rotation angle (degrees) 167.35696729 |
| 2013 | | Shift along axis 218.76075747 |
| 2014 | | |
| 2015 | | > view matrix models |
| 2016 | | > #5,-0.2533,0.92841,0.27182,387.72,0.081794,-0.25943,0.96229,665.97,0.96392,0.26598,-0.010227,-88.419,#6,-0.52912,0.84171,0.10744,236.57,0.83308,0.53936,-0.12273,301.94,-0.16125,0.024573,-0.98661,292.73> |
| 2017 | | > view matrix models |
| 2018 | | > #5,-0.080396,0.95861,-0.27315,109.58,-0.50547,0.19698,0.84006,806.36,0.85909,0.20561,0.46871,140.76,#6,-0.9031,0.42874,-0.024432,240.52,0.38261,0.82915,0.40758,295.22,0.195,0.35873,-0.91284,289.83> |
| 2019 | | > ui mousemode right "rotate selected models"> ui mousemode right "translate |
| 2020 | | > selected models"> view matrix models |
| 2021 | | > #5,-0.080396,0.95861,-0.27315,113.92,-0.50547,0.19698,0.84006,812.52,0.85909,0.20561,0.46871,133.27,#6,-0.9031,0.42874,-0.024432,244.86,0.38261,0.82915,0.40758,301.37,0.195,0.35873,-0.91284,282.33> |
| 2022 | | > view matrix models |
| 2023 | | > #5,-0.080396,0.95861,-0.27315,109.21,-0.50547,0.19698,0.84006,820.14,0.85909,0.20561,0.46871,139.18,#6,-0.9031,0.42874,-0.024432,240.16,0.38261,0.82915,0.40758,309,0.195,0.35873,-0.91284,288.24> |
| 2024 | | > view matrix models |
| 2025 | | > #5,-0.080396,0.95861,-0.27315,108.57,-0.50547,0.19698,0.84006,824.36,0.85909,0.20561,0.46871,140.38,#6,-0.9031,0.42874,-0.024432,239.51,0.38261,0.82915,0.40758,313.22,0.195,0.35873,-0.91284,289.45> |
| 2026 | | > ui mousemode right "rotate selected models"> view matrix models |
| 2027 | | > #5,0.091143,0.9467,0.30895,273.24,-0.16968,-0.29094,0.94157,770.43,0.98128,-0.13824,0.13412,-13.934,#6,-0.50226,0.83124,-0.23827,237.91,0.83131,0.54002,0.13155,318.31,0.23802,-0.132,-0.96225,294.25> |
| 2028 | | > view matrix models |
| 2029 | | > #5,0.63807,0.72115,0.26983,70.505,-0.17926,-0.20168,0.96291,776.77,0.74882,-0.66278,0.00058407,51.936,#6,-0.33328,0.5763,-0.7462,243.71,0.77796,0.6152,0.12766,317.57,0.53263,-0.53797,-0.65337,296.41> |
| 2030 | | > view matrix models |
| 2031 | | > #5,0.53579,0.82092,0.19753,73.802,-0.12537,-0.154,0.98008,760.69,0.83499,-0.54989,0.020404,20.971,#6,-0.4606,0.60178,-0.65247,242.68,0.75604,0.65111,0.066811,317.6,0.46503,-0.46252,-0.75486,296.27> |
| 2032 | | > view matrix models |
| 2033 | | > #5,0.19065,0.96194,0.19575,191.5,-0.028672,-0.19387,0.98061,727.75,0.98124,-0.19256,-0.0093789,-66.552,#6,-0.5837,0.74202,-0.32968,239.16,0.79081,0.61161,-0.023577,318.59,0.18414,-0.27448,-0.9438,295.32> |
| 2034 | | > view matrix models |
| 2035 | | > #5,-0.062999,0.98925,-0.13198,155.35,-0.13769,0.12236,0.98289,749.26,0.98847,0.080093,0.1285,-32.246,#6,-0.83218,0.5516,-0.056758,238.73,0.54997,0.8341,0.042615,315.77,0.070848,0.0042482,-0.99748,292.97> |
| 2036 | | > view matrix models |
| 2037 | | > #5,-0.19218,0.97766,0.085187,288.36,0.077415,-0.071431,0.99444,686.52,0.9783,0.19771,-0.061957,-110.07,#6,-0.6863,0.72522,0.055312,236.69,0.71303,0.68586,-0.14553,318.57,-0.14347,-0.060435,-0.98781,293.14> |
| 2038 | | > view matrix models |
| 2039 | | > #5,0.41028,0.85223,0.32461,167.67,0.16147,-0.41821,0.89388,637.74,0.89755,-0.31433,-0.30919,-145.19,#6,-0.40615,0.73532,-0.54254,240.87,0.91082,0.37374,-0.17531,321.89,0.07386,-0.56535,-0.82153,296.98> |
| 2040 | | > view matrix models |
| 2041 | | > #5,0.34369,0.68075,0.64689,328.5,0.33116,-0.73245,0.59485,477.98,0.87876,0.0097805,-0.47717,-223.81,#6,-0.068061,0.87479,-0.47969,239.76,0.9573,-0.078141,-0.27833,326.69,-0.28096,-0.47815,-0.83212,295.68> |
| 2042 | | > view matrix models |
| 2043 | | > #5,0.16198,0.73523,0.65818,396.46,0.33802,-0.66797,0.66299,498.06,0.9271,0.11509,-0.35672,-201.11,#6,-0.10998,0.94497,-0.30813,237.97,0.95418,0.013589,-0.29891,325.99,-0.27828,-0.32689,-0.90316,294.78> |
| 2044 | | > ui mousemode right "translate selected models"> view matrix models |
| 2045 | | > #5,0.16198,0.73523,0.65818,392.54,0.33802,-0.66797,0.66299,486.45,0.9271,0.11509,-0.35672,-202.35,#6,-0.10998,0.94497,-0.30813,234.06,0.95418,0.013589,-0.29891,314.38,-0.27828,-0.32689,-0.90316,293.55> |
| 2046 | | > view matrix models |
| 2047 | | > #5,0.16198,0.73523,0.65818,392.9,0.33802,-0.66797,0.66299,484.42,0.9271,0.11509,-0.35672,-202.32,#6,-0.10998,0.94497,-0.30813,234.41,0.95418,0.013589,-0.29891,312.35,-0.27828,-0.32689,-0.90316,293.58> |
| 2048 | | > view matrix models |
| 2049 | | > #5,0.16198,0.73523,0.65818,397.84,0.33802,-0.66797,0.66299,485.66,0.9271,0.11509,-0.35672,-198.61,#6,-0.10998,0.94497,-0.30813,239.35,0.95418,0.013589,-0.29891,313.59,-0.27828,-0.32689,-0.90316,297.28> |
| 2050 | | > view matrix models |
| 2051 | | > #5,0.16198,0.73523,0.65818,399.84,0.33802,-0.66797,0.66299,484.43,0.9271,0.11509,-0.35672,-202.16,#6,-0.10998,0.94497,-0.30813,241.35,0.95418,0.013589,-0.29891,312.36,-0.27828,-0.32689,-0.90316,293.73> |
| 2052 | | > fitmap sel inMap #1Fit molecules AlphaFold Q9JIF7 (#5), AlphaFold P84078 |
| 2053 | | > (#6) to map postprocess.mrc (#1) using 3391 atoms |
| 2054 | | average map value = 0.006527, steps = 2000 |
| 2055 | | shifted from previous position = 57.2 |
| 2056 | | rotated from previous position = 12.8 degrees |
| 2057 | | atoms outside contour = 2926, contour level = 0.0076678 |
| 2058 | | |
| 2059 | | Position of AlphaFold Q9JIF7 (#5) relative to postprocess.mrc (#1) |
| 2060 | | coordinates: |
| 2061 | | Matrix rotation and translation |
| 2062 | | -0.04834974 0.70373818 0.70881229 499.38635257 |
| 2063 | | 0.37624850 -0.64453776 0.66558855 468.54924077 |
| 2064 | | 0.92525637 0.29887060 -0.23361721 -164.79401783 |
| 2065 | | Axis -0.68265201 -0.40291451 -0.60962787 |
| 2066 | | Axis point 0.00000000 44.16621885 -335.00198418 |
| 2067 | | Rotation angle (degrees) 164.41914190 |
| 2068 | | Shift along axis -429.22935818 |
| 2069 | | |
| 2070 | | Position of AlphaFold P84078 (#6) relative to postprocess.mrc (#1) |
| 2071 | | coordinates: |
| 2072 | | Matrix rotation and translation |
| 2073 | | -0.06279140 0.99298997 -0.10014066 240.07573806 |
| 2074 | | 0.94010178 0.02516248 -0.33996394 311.12020767 |
| 2075 | | -0.33506099 -0.11548923 -0.93509163 291.94452474 |
| 2076 | | Axis 0.68187636 0.71360654 -0.16065598 |
| 2077 | | Axis point -8.49428540 0.00000000 180.46874782 |
| 2078 | | Rotation angle (degrees) 170.52595832 |
| 2079 | | Shift along axis 338.81675107 |
| 2080 | | |
| 2081 | | > view matrix models |
| 2082 | | > #5,-0.04835,0.70374,0.70881,497.88,0.37625,-0.64454,0.66559,469.9,0.92526,0.29887,-0.23362,-167.1,#6,-0.062791,0.99299,-0.10014,238.57,0.9401,0.025162,-0.33996,312.47,-0.33506,-0.11549,-0.93509,289.64> |
| 2083 | | > ui mousemode right "rotate selected models"> view matrix models |
| 2084 | | > #5,-0.25589,0.96045,0.10979,324.76,-0.29595,-0.18595,0.93693,794.98,0.92029,0.20726,0.33183,60.99,#6,-0.66014,0.74172,0.11858,238.46,0.74358,0.62294,0.24297,303.06,0.10635,0.24857,-0.96276,287.27> |
| 2085 | | > view matrix models |
| 2086 | | > #5,-0.26553,0.96312,-0.043574,268.31,-0.40314,-0.069863,0.91247,817.74,0.87577,0.25985,0.40682,103.4,#6,-0.76373,0.6302,0.13985,239.16,0.63534,0.69548,0.33565,301.64,0.11427,0.3452,-0.93155,286.21> |
| 2087 | | > ui mousemode right "translate selected models"> view matrix models |
| 2088 | | > #5,-0.26553,0.96312,-0.043574,265.25,-0.40314,-0.069863,0.91247,819.82,0.87577,0.25985,0.40682,101.72,#6,-0.76373,0.6302,0.13985,236.1,0.63534,0.69548,0.33565,303.71,0.11427,0.3452,-0.93155,284.53> |
| 2089 | | > view matrix models |
| 2090 | | > #5,-0.26553,0.96312,-0.043574,264.6,-0.40314,-0.069863,0.91247,824.29,0.87577,0.25985,0.40682,102.95,#6,-0.76373,0.6302,0.13985,235.45,0.63534,0.69548,0.33565,308.18,0.11427,0.3452,-0.93155,285.76> |
| 2091 | | > view matrix models |
| 2092 | | > #5,-0.26553,0.96312,-0.043574,265.77,-0.40314,-0.069863,0.91247,822.97,0.87577,0.25985,0.40682,103.9,#6,-0.76373,0.6302,0.13985,236.62,0.63534,0.69548,0.33565,306.86,0.11427,0.3452,-0.93155,286.71> |
| 2093 | | > ui mousemode right "rotate selected models"> view matrix models |
| 2094 | | > #5,-0.096354,0.96226,-0.25451,121.23,-0.71537,0.11084,0.6899,839.95,0.69207,0.24855,0.67769,277.91,#6,-0.89429,0.44735,-0.010607,239.01,0.33839,0.6916,0.63811,304.48,0.2928,0.56707,-0.76987,283.98> |
| 2095 | | > view matrix models |
| 2096 | | > #5,-0.41274,-0.045038,-0.90974,44.264,-0.90109,-0.12566,0.41503,815.7,-0.13301,0.99105,0.011283,275.92,#6,-0.58546,-0.64927,0.48548,246.22,0.32588,0.35985,0.87425,305.94,-0.74232,0.67004,0.0009085,276.45> |
| 2097 | | > view matrix models |
| 2098 | | > #5,-0.59233,-0.74854,-0.29805,392.45,-0.67701,0.66298,-0.31957,397.92,0.43681,0.012488,-0.89947,-228.84,#6,0.33736,-0.62179,0.7068,246.07,-0.7398,0.28919,0.60751,306.54,-0.58215,-0.72783,-0.36244,291.6> |
| 2099 | | > view matrix models |
| 2100 | | > #5,-0.88795,-0.45286,-0.080415,567.97,0.28284,-0.39976,-0.87189,-105.43,0.3627,-0.79694,0.48306,387.78,#6,0.24524,-0.22449,0.94311,240.84,-0.26186,-0.952,-0.15852,323.36,0.93343,-0.20809,-0.29225,288.95> |
| 2101 | | > view matrix models |
| 2102 | | > #5,-0.88787,-0.45545,-0.065149,574.06,0.085665,-0.024526,-0.99602,-104.41,0.45204,-0.88992,0.060792,195.88,#6,0.25725,-0.21477,0.94218,240.78,-0.63446,-0.77295,-0.0029616,320.15,0.72889,-0.59701,-0.33511,292.39> |
| 2103 | | > view matrix models |
| 2104 | | > #5,-0.84528,-0.53404,-0.017379,581.86,-0.0041565,0.039095,-0.99923,-76.507,0.53431,-0.84455,-0.035266,125.31,#6,0.34971,-0.23618,0.9066,241.35,-0.68851,-0.72105,0.077736,319.08,0.63535,-0.65138,-0.41477,293.24> |
| 2105 | | > ui mousemode right "translate selected models"> view matrix models |
| 2106 | | > #5,-0.84528,-0.53404,-0.017379,577.09,-0.0041565,0.039095,-0.99923,-81.656,0.53431,-0.84455,-0.035266,122.35,#6,0.34971,-0.23618,0.9066,236.58,-0.68851,-0.72105,0.077736,313.93,0.63535,-0.65138,-0.41477,290.28> |
| 2107 | | > view matrix models |
| 2108 | | > #5,-0.84528,-0.53404,-0.017379,575.68,-0.0041565,0.039095,-0.99923,-81.253,0.53431,-0.84455,-0.035266,119.47,#6,0.34971,-0.23618,0.9066,235.17,-0.68851,-0.72105,0.077736,314.34,0.63535,-0.65138,-0.41477,287.4> |
| 2109 | | > view matrix models |
| 2110 | | > #5,-0.84528,-0.53404,-0.017379,575.42,-0.0041565,0.039095,-0.99923,-80.212,0.53431,-0.84455,-0.035266,121.31,#6,0.34971,-0.23618,0.9066,234.91,-0.68851,-0.72105,0.077736,315.38,0.63535,-0.65138,-0.41477,289.24> |
| 2111 | | > ui mousemode right "rotate selected models"> view matrix models |
| 2112 | | > #5,-0.898,-0.43956,0.019715,603.47,-0.0080542,-0.028378,-0.99956,-74.745,0.43993,-0.89776,0.021943,181.67,#6,0.30082,-0.13956,0.94341,233.73,-0.63829,-0.76447,0.090441,315.77,0.70859,-0.62938,-0.31905,288.55> |
| 2113 | | > view matrix models |
| 2114 | | > #5,-0.73058,-0.67803,0.080783,580.37,-0.29541,0.20719,-0.93263,42.645,0.61561,-0.70523,-0.35167,-40.668,#6,0.52783,-0.27279,0.80435,236.18,-0.78432,-0.51998,0.33834,311.75,0.32595,-0.80945,-0.48842,290.62> |
| 2115 | | > view matrix models |
| 2116 | | > #5,-0.82117,-0.54947,0.15417,634.42,-0.23969,0.0869,-0.96695,16.16,0.51791,-0.83098,-0.20306,61.046,#6,0.47555,-0.12144,0.87127,234.31,-0.71409,-0.6317,0.30171,313.1,0.51374,-0.76564,-0.38712,289.89> |
| 2117 | | > view matrix models |
| 2118 | | > #5,-0.86724,-0.44653,0.22026,670.82,-0.32028,0.16161,-0.93344,54.301,0.38121,-0.88006,-0.28317,83.161,#6,0.43974,0.0013758,0.89812,232.98,-0.75181,-0.54651,0.36894,311.85,0.49134,-0.83745,-0.23929,289.56> |
| 2119 | | > fitmap sel inMap #1Fit molecules AlphaFold Q9JIF7 (#5), AlphaFold P84078 |
| 2120 | | > (#6) to map postprocess.mrc (#1) using 3391 atoms |
| 2121 | | average map value = 0.006896, steps = 2000 |
| 2122 | | shifted from previous position = 102 |
| 2123 | | rotated from previous position = 20.5 degrees |
| 2124 | | atoms outside contour = 2836, contour level = 0.0076678 |
| 2125 | | |
| 2126 | | Position of AlphaFold Q9JIF7 (#5) relative to postprocess.mrc (#1) |
| 2127 | | coordinates: |
| 2128 | | Matrix rotation and translation |
| 2129 | | -0.97686247 -0.21016135 0.03964732 631.50637819 |
| 2130 | | -0.05878614 0.08561538 -0.99459247 -62.25688663 |
| 2131 | | 0.20563048 -0.97391077 -0.09598903 229.87395164 |
| 2132 | | Axis 0.09167666 -0.73576092 0.67100764 |
| 2133 | | Axis point 309.69104936 0.00000000 109.91985102 |
| 2134 | | Rotation angle (degrees) 173.52342786 |
| 2135 | | Shift along axis 257.94776112 |
| 2136 | | |
| 2137 | | Position of AlphaFold P84078 (#6) relative to postprocess.mrc (#1) |
| 2138 | | coordinates: |
| 2139 | | Matrix rotation and translation |
| 2140 | | 0.13817331 0.03547624 0.98977248 236.96498569 |
| 2141 | | -0.72290436 -0.67949678 0.12527331 313.54567562 |
| 2142 | | 0.67699144 -0.73282027 -0.06824239 291.07456381 |
| 2143 | | Axis -0.72282519 0.26347478 -0.63883079 |
| 2144 | | Axis point 0.00000000 226.26842741 -46.97006814 |
| 2145 | | Rotation angle (degrees) 143.58929744 |
| 2146 | | Shift along axis -274.62027921 |
| 2147 | | |
| 2148 | | > ui tool show AlphaFold> alphafold match P840781 AlphaFold model found using |
| 2149 | | > UniProt identifier: P84078 (UniProt P84078) |
| 2150 | | | Sequence Similarity |
| 2151 | | --- |
| 2152 | | AlphaFold Model| Query Sequence| Identity %| Coverage % |
| 2153 | | P84078 | P84078 | 100.0 | 100.0 |
| 2154 | | Opened 1 AlphaFold model |
| 2155 | | > select subtract #61934 atoms, 1972 bonds, 238 residues, 1 model selected |
| 2156 | | > select add #73391 atoms, 3455 bonds, 419 residues, 2 models selected |
| 2157 | | > ui mousemode right "translate selected models"> view matrix models |
| 2158 | | > #5,-0.97686,-0.21016,0.039647,976.12,-0.058786,0.085615,-0.99459,70.39,0.20563,-0.97391,-0.095989,418.44,#7,1,0,0,344.62,0,1,0,132.65,0,0,1,188.56> |
| 2159 | | > view matrix models |
| 2160 | | > #5,-0.97686,-0.21016,0.039647,914.72,-0.058786,0.085615,-0.99459,296.23,0.20563,-0.97391,-0.095989,481.88,#7,1,0,0,283.21,0,1,0,358.48,0,0,1,252.01> |
| 2161 | | > view matrix models |
| 2162 | | > #5,-0.97686,-0.21016,0.039647,898.61,-0.058786,0.085615,-0.99459,313.49,0.20563,-0.97391,-0.095989,495.6,#7,1,0,0,267.11,0,1,0,375.75,0,0,1,265.73> |
| 2163 | | > view matrix models |
| 2164 | | > #5,-0.97686,-0.21016,0.039647,874.97,-0.058786,0.085615,-0.99459,288.55,0.20563,-0.97391,-0.095989,517.06,#7,1,0,0,243.47,0,1,0,350.81,0,0,1,287.18> |
| 2165 | | > ui mousemode right "rotate selected models"> view matrix models |
| 2166 | | > #5,-0.85125,-0.13258,-0.50773,735.11,0.24578,-0.9556,-0.16254,548.99,-0.46364,-0.26316,0.84604,714,#7,0.83929,0.54368,0.0028187,238.3,-0.045712,0.065399,0.99681,352.79,0.54176,-0.83674,0.079742,301.46> |
| 2167 | | > view matrix models |
| 2168 | | > #5,-0.57508,-0.29644,-0.7625,617.64,-0.20794,-0.84847,0.48669,817.01,-0.79123,0.43844,0.42629,618.56,#7,0.59384,0.7668,0.24365,234.35,0.40074,-0.54448,0.73686,360.66,0.69768,-0.33994,-0.63062,301.77> |
| 2169 | | > volume #1 level 0.006976> volume #1 level 0.01071> view matrix models |
| 2170 | | > #5,-0.092924,-0.41978,-0.90286,377.16,-0.46451,-0.78378,0.41222,934.2,-0.88068,0.45769,-0.12216,621.65,#7,0.1432,0.8675,0.47638,231.23,0.63483,-0.44979,0.62824,360.88,0.75927,0.21246,-0.61512,296.8> |
| 2171 | | > ui mousemode right "translate selected models"> view matrix models |
| 2172 | | > #5,-0.092924,-0.41978,-0.90286,349.18,-0.46451,-0.78378,0.41222,934.92,-0.88068,0.45769,-0.12216,595.75,#7,0.1432,0.8675,0.47638,203.25,0.63483,-0.44979,0.62824,361.61,0.75927,0.21246,-0.61512,270.9> |
| 2173 | | > volume #1 level 0.0067> view matrix models |
| 2174 | | > #5,-0.092924,-0.41978,-0.90286,374.03,-0.46451,-0.78378,0.41222,927.65,-0.88068,0.45769,-0.12216,624.03,#7,0.1432,0.8675,0.47638,228.1,0.63483,-0.44979,0.62824,354.34,0.75927,0.21246,-0.61512,299.18> |
| 2175 | | > ui mousemode right "rotate selected models"> view matrix models |
| 2176 | | > #5,-0.78353,-0.53891,-0.30928,853.27,-0.52511,0.3082,0.79327,600.83,-0.33218,0.78395,-0.52447,165.9,#7,0.8664,0.30753,0.39342,234.85,0.47963,-0.73172,-0.48428,363.71,0.13894,0.60828,-0.78147,295.66> |
| 2177 | | > view matrix models |
| 2178 | | > #5,-0.49504,-0.20081,-0.84535,528.72,-0.8214,-0.20904,0.53067,934.23,-0.28328,0.95707,-0.061463,110.84,#7,0.49227,0.85268,0.17492,230.72,0.86736,-0.49741,-0.016255,359.25,0.073149,0.15972,-0.98445,300.88> |
| 2179 | | > view matrix models |
| 2180 | | > #5,-0.31735,0.55711,-0.76741,163.09,-0.71256,-0.67406,-0.19467,984.26,-0.62573,0.48505,0.61089,524,#7,0.1625,0.82961,-0.53417,234.91,0.83002,0.1778,0.52864,349.65,0.53354,-0.52928,-0.6597,305.77> |
| 2181 | | > view matrix models |
| 2182 | | > #5,-0.42011,0.76147,-0.49364,168.97,-0.86041,-0.50714,-0.05003,1019.5,-0.28844,0.40371,0.86823,380.5,#7,0.23079,0.58086,-0.7806,238.83,0.9451,0.056921,0.32178,352.24,0.23134,-0.81201,-0.53583,307.03> |
| 2183 | | > view matrix models |
| 2184 | | > #5,-0.59175,0.80293,0.071683,293.85,-0.77375,-0.5408,-0.32991,961.41,-0.22613,-0.25069,0.94129,584.05,#7,0.41216,0.032235,-0.91054,244.89,0.85643,0.32731,0.39925,349.17,0.3109,-0.94437,0.1073,304.25> |
| 2185 | | > view matrix models |
| 2186 | | > #5,-0.60495,0.24786,-0.7567,437.69,-0.53688,-0.82878,0.15775,965.88,-0.58804,0.50169,0.63444,498.4,#7,0.50886,0.80939,-0.29315,234.12,0.70489,-0.19629,0.68162,351.83,0.49415,-0.55349,-0.67042,305.99> |
| 2187 | | > view matrix models |
| 2188 | | > #5,-0.32974,0.62176,-0.71042,151.31,-0.43463,-0.76799,-0.47041,839.27,-0.83807,0.15366,0.52347,756.42,#7,0.16328,0.77919,-0.60515,235.81,0.56733,0.42767,0.70373,345.85,0.80714,-0.45822,-0.37223,303.74> |
| 2189 | | > view matrix models |
| 2190 | | > #5,-0.00082256,-0.62086,-0.78392,402.3,-0.99976,0.017546,-0.012847,914.25,0.02173,0.78373,-0.62073,-42.334,#7,0.1002,0.72658,0.67974,228,0.97243,0.073052,-0.22144,355.6,-0.21055,0.68319,-0.69923,293.9> |
| 2191 | | > view matrix models |
| 2192 | | > #5,-0.30162,0.011223,-0.95336,335.08,-0.95287,-0.037697,0.30102,930.7,-0.03256,0.99923,0.022064,-40.478,#7,0.25448,0.9669,0.01856,230.3,0.95068,-0.2466,-0.18812,358.23,-0.17732,0.065518,-0.98197,301.31> |
| 2193 | | > view matrix models |
| 2194 | | > #5,-0.22656,0.75112,-0.62007,53.238,-0.70375,-0.56636,-0.42892,923.37,-0.67335,0.3392,0.65692,606.54,#7,0.038882,0.69435,-0.71859,237.1,0.78949,0.41948,0.44805,347.92,0.61253,-0.58474,-0.53187,305.58> |
| 2195 | | > view matrix models |
| 2196 | | > #5,-0.1711,-0.05398,-0.98377,281.9,-0.77949,-0.60328,0.16868,1024.1,-0.60259,0.7957,0.061145,359.03,#7,0.13948,0.98389,0.11182,229.37,0.89493,-0.17359,0.41106,353.66,0.42385,0.042734,-0.90472,302> |
| 2197 | | > view matrix models |
| 2198 | | > #5,0.31548,0.11853,-0.9415,-53.054,-0.91235,0.3107,-0.2666,741.05,0.26093,0.94309,0.20617,-173.53,#7,-0.37042,0.92801,0.039805,229.5,0.81538,0.34539,-0.46461,354.44,-0.44491,-0.13965,-0.88462,302.1> |
| 2199 | | > ui mousemode right "translate selected models"> view matrix models |
| 2200 | | > #5,0.31548,0.11853,-0.9415,-41.293,-0.91235,0.3107,-0.2666,742.29,0.26093,0.94309,0.20617,-185.05,#7,-0.37042,0.92801,0.039805,241.26,0.81538,0.34539,-0.46461,355.68,-0.44491,-0.13965,-0.88462,290.57> |
| 2201 | | > view matrix models |
| 2202 | | > #5,0.31548,0.11853,-0.9415,-39.115,-0.91235,0.3107,-0.2666,741.63,0.26093,0.94309,0.20617,-182.57,#7,-0.37042,0.92801,0.039805,243.43,0.81538,0.34539,-0.46461,355.02,-0.44491,-0.13965,-0.88462,293.05> |
| 2203 | | > view matrix models |
| 2204 | | > #5,0.31548,0.11853,-0.9415,-38.981,-0.91235,0.3107,-0.2666,737.98,0.26093,0.94309,0.20617,-182.3,#7,-0.37042,0.92801,0.039805,243.57,0.81538,0.34539,-0.46461,351.37,-0.44491,-0.13965,-0.88462,293.32> |
| 2205 | | > fitmap sel inMap #1Fit molecules AlphaFold Q9JIF7 (#5), AlphaFold P84078 |
| 2206 | | > (#7) to map postprocess.mrc (#1) using 3391 atoms |
| 2207 | | average map value = 0.00607, steps = 2000 |
| 2208 | | shifted from previous position = 207 |
| 2209 | | rotated from previous position = 33.5 degrees |
| 2210 | | atoms outside contour = 2860, contour level = 0.0066997 |
| 2211 | | |
| 2212 | | Position of AlphaFold Q9JIF7 (#5) relative to postprocess.mrc (#1) |
| 2213 | | coordinates: |
| 2214 | | Matrix rotation and translation |
| 2215 | | 0.70129333 0.30350009 -0.64503902 -301.43057902 |
| 2216 | | -0.66567175 0.60257977 -0.44020305 479.70630653 |
| 2217 | | 0.25508580 0.73809573 0.62461662 -80.49754857 |
| 2218 | | Axis 0.66517422 -0.50813923 -0.54711771 |
| 2219 | | Axis point 0.00000000 496.85702895 179.18523971 |
| 2220 | | Rotation angle (degrees) 62.33863827 |
| 2221 | | Shift along axis -400.21980655 |
| 2222 | | |
| 2223 | | Position of AlphaFold P84078 (#7) relative to postprocess.mrc (#1) |
| 2224 | | coordinates: |
| 2225 | | Matrix rotation and translation |
| 2226 | | -0.77442520 0.62630892 -0.08945806 247.17999696 |
| 2227 | | 0.50617791 0.52854501 -0.68148668 349.61333079 |
| 2228 | | -0.37953857 -0.57304215 -0.72634232 290.47483922 |
| 2229 | | Axis 0.32647079 0.87328350 -0.36165279 |
| 2230 | | Axis point 77.01233711 0.00000000 210.18703682 |
| 2231 | | Rotation angle (degrees) 170.43966562 |
| 2232 | | Shift along axis 280.95756714 |
| 2233 | | |
| 2234 | | > view matrix models |
| 2235 | | > #5,0.70129,0.3035,-0.64504,-301.05,-0.66567,0.60258,-0.4402,479.69,0.25509,0.7381,0.62462,-80.042,#7,-0.77443,0.62631,-0.089458,247.56,0.50618,0.52855,-0.68149,349.6,-0.37954,-0.57304,-0.72634,290.93> |
| 2236 | | > ui mousemode right "rotate selected models"> view matrix models |
| 2237 | | > #5,0.64904,0.39252,-0.65167,-303.62,-0.72842,0.56773,-0.38351,532.01,0.21944,0.72361,0.6544,-52.392,#7,-0.74235,0.6436,-0.18627,248.07,0.57705,0.47287,-0.66589,350.12,-0.34049,-0.60181,-0.72242,291.23> |
| 2238 | | > view matrix models |
| 2239 | | > #5,0.61859,0.44518,-0.64742,-304.79,-0.7605,0.54632,-0.35097,560.31,0.19745,0.70947,0.67651,-33.203,#7,-0.72351,0.64567,-0.24422,248.45,0.61417,0.44056,-0.65476,350.4,-0.31516,-0.62372,-0.7153,291.42> |
| 2240 | | > view matrix models |
| 2241 | | > #5,0.61336,0.44471,-0.6527,-302.04,-0.7266,0.64166,-0.24561,514.88,0.30958,0.6249,0.7167,-63.763,#7,-0.71851,0.65119,-0.24434,248.41,0.5652,0.34194,-0.75075,351.82,-0.40534,-0.67752,-0.61374,291.11> |
| 2242 | | > view matrix models |
| 2243 | | > #5,0.61839,0.40672,-0.67244,-292.81,-0.59513,0.80117,-0.062717,396.87,0.51323,0.43898,0.73749,-111.61,#7,-0.71622,0.66727,-0.2044,248.02,0.4105,0.16596,-0.89663,354.07,-0.56438,-0.72609,-0.39278,289.88> |
| 2244 | | > view matrix models |
| 2245 | | > #5,0.62873,0.64782,-0.43015,-366.67,-0.73016,0.68211,-0.039965,517.79,0.26752,0.3392,0.90187,75.891,#7,-0.76739,0.44633,-0.46034,251.55,0.56833,0.14107,-0.81062,354.01,-0.29686,-0.88368,-0.36191,291.54> |
| 2246 | | > ui mousemode right "translate selected models"> view matrix models |
| 2247 | | > #5,0.62873,0.64782,-0.43015,-373.64,-0.73016,0.68211,-0.039965,516.13,0.26752,0.3392,0.90187,76.782,#7,-0.76739,0.44633,-0.46034,244.58,0.56833,0.14107,-0.81062,352.35,-0.29686,-0.88368,-0.36191,292.43> |
| 2248 | | > fitmap sel inMap #1Fit molecules AlphaFold Q9JIF7 (#5), AlphaFold P84078 |
| 2249 | | > (#7) to map postprocess.mrc (#1) using 3391 atoms |
| 2250 | | average map value = 0.006366, steps = 2000 |
| 2251 | | shifted from previous position = 68.3 |
| 2252 | | rotated from previous position = 12.9 degrees |
| 2253 | | atoms outside contour = 2782, contour level = 0.0066997 |
| 2254 | | |
| 2255 | | Position of AlphaFold Q9JIF7 (#5) relative to postprocess.mrc (#1) |
| 2256 | | coordinates: |
| 2257 | | Matrix rotation and translation |
| 2258 | | 0.62743406 0.74307018 -0.23275136 -389.00714335 |
| 2259 | | -0.75912757 0.65026798 0.02961206 547.56145841 |
| 2260 | | 0.17335459 0.15810837 0.97208534 199.59025622 |
| 2261 | | Axis 0.08229454 -0.26008764 -0.96207174 |
| 2262 | | Axis point 303.22479500 634.96258447 0.00000000 |
| 2263 | | Rotation angle (degrees) 51.32561454 |
| 2264 | | Shift along axis -366.44727440 |
| 2265 | | |
| 2266 | | Position of AlphaFold P84078 (#7) relative to postprocess.mrc (#1) |
| 2267 | | coordinates: |
| 2268 | | Matrix rotation and translation |
| 2269 | | -0.77830940 0.25822657 -0.57232292 250.13871784 |
| 2270 | | 0.60607608 0.07084719 -0.79224520 351.34780734 |
| 2271 | | -0.16403129 -0.96348312 -0.21164598 291.84550134 |
| 2272 | | Axis -0.30412633 -0.72514452 0.61779657 |
| 2273 | | Axis point 13.26729456 0.00000000 315.83389237 |
| 2274 | | Rotation angle (degrees) 163.64879838 |
| 2275 | | Shift along axis -150.55055819 |
| 2276 | | |
| 2277 | | > view matrix models |
| 2278 | | > #5,0.62743,0.74307,-0.23275,-393.66,-0.75913,0.65027,0.029612,544.8,0.17335,0.15811,0.97209,196.96,#7,-0.77831,0.25823,-0.57232,245.49,0.60608,0.070847,-0.79225,348.59,-0.16403,-0.96348,-0.21165,289.22> |
| 2279 | | > volume #1 level 0.007668> view matrix models |
| 2280 | | > #5,0.62743,0.74307,-0.23275,-389.57,-0.75913,0.65027,0.029612,546.54,0.17335,0.15811,0.97209,197.91,#7,-0.77831,0.25823,-0.57232,249.57,0.60608,0.070847,-0.79225,350.33,-0.16403,-0.96348,-0.21165,290.16> |
| 2281 | | > view matrix models |
| 2282 | | > #5,0.62743,0.74307,-0.23275,-394.31,-0.75913,0.65027,0.029612,546.08,0.17335,0.15811,0.97209,198.81,#7,-0.77831,0.25823,-0.57232,244.83,0.60608,0.070847,-0.79225,349.86,-0.16403,-0.96348,-0.21165,291.07> |
| 2283 | | > ui mousemode right "rotate selected models"> view matrix models |
| 2284 | | > #5,0.21109,0.74123,-0.6372,-187.17,-0.97471,0.11072,-0.1941,844.46,-0.073321,0.66206,0.74586,142.32,#7,-0.38725,0.6848,-0.61732,241.92,0.9212,0.25983,-0.28963,345.48,-0.037943,-0.68083,-0.73146,292.04> |
| 2285 | | > ui mousemode right "translate selected models"> view matrix models |
| 2286 | | > #5,0.21109,0.74123,-0.6372,-185.42,-0.97471,0.11072,-0.1941,853.15,-0.073321,0.66206,0.74586,142.55,#7,-0.38725,0.6848,-0.61732,243.67,0.9212,0.25983,-0.28963,354.17,-0.037943,-0.68083,-0.73146,292.27> |
| 2287 | | > view matrix models |
| 2288 | | > #5,0.21109,0.74123,-0.6372,-185.65,-0.97471,0.11072,-0.1941,852.57,-0.073321,0.66206,0.74586,140.9,#7,-0.38725,0.6848,-0.61732,243.44,0.9212,0.25983,-0.28963,353.58,-0.037943,-0.68083,-0.73146,290.62> |
| 2289 | | > ui mousemode right "rotate selected models"> view matrix models |
| 2290 | | > #5,0.003999,0.81501,-0.57943,-89.972,-0.94546,0.19182,0.26328,841.08,0.32573,0.54678,0.77132,-42.862,#7,-0.19816,0.64584,-0.73731,244.86,0.8937,-0.18986,-0.4065,358.33,-0.40252,-0.73949,-0.53957,289.33> |
| 2291 | | > fitmap sel inMap #1Fit molecules AlphaFold Q9JIF7 (#5), AlphaFold P84078 |
| 2292 | | > (#7) to map postprocess.mrc (#1) using 3391 atoms |
| 2293 | | average map value = 0.006182, steps = 2000 |
| 2294 | | shifted from previous position = 726 |
| 2295 | | rotated from previous position = 171 degrees |
| 2296 | | atoms outside contour = 2996, contour level = 0.0076678 |
| 2297 | | |
| 2298 | | Position of AlphaFold Q9JIF7 (#5) relative to postprocess.mrc (#1) |
| 2299 | | coordinates: |
| 2300 | | Matrix rotation and translation |
| 2301 | | -0.50985198 0.62390399 0.59227929 352.88224092 |
| 2302 | | 0.48726269 0.77683931 -0.39886807 -230.28494929 |
| 2303 | | -0.70896122 0.08523193 -0.70007820 614.27879090 |
| 2304 | | Axis 0.34700498 0.93273485 -0.09794507 |
| 2305 | | Axis point 349.83451264 0.00000000 206.65062897 |
| 2306 | | Rotation angle (degrees) 135.76999700 |
| 2307 | | Shift along axis -152.50848503 |
| 2308 | | |
| 2309 | | Position of AlphaFold P84078 (#7) relative to postprocess.mrc (#1) |
| 2310 | | coordinates: |
| 2311 | | Matrix rotation and translation |
| 2312 | | 0.39041705 -0.50568852 -0.76932025 251.69547574 |
| 2313 | | -0.65506429 0.43457629 -0.61808917 352.53029652 |
| 2314 | | 0.64688894 0.74526677 -0.16159250 289.30819786 |
| 2315 | | Axis 0.69154220 -0.71835123 -0.07576866 |
| 2316 | | Axis point 130.13070659 0.00000000 314.93649546 |
| 2317 | | Rotation angle (degrees) 99.68896785 |
| 2318 | | Shift along axis -101.10302239 |
| 2319 | | |
| 2320 | | > view matrix models |
| 2321 | | > #5,0.89829,0.066059,0.4344,-260.13,-0.42278,0.39926,0.81354,512.01,-0.1197,-0.91445,0.38658,717.07,#7,-0.87417,-0.4792,0.078683,243.99,0.36134,-0.75011,-0.55387,364.44,0.32444,-0.45575,0.82888,293.28> |
| 2322 | | > view matrix models |
| 2323 | | > #5,0.51536,0.72527,-0.45649,-344.11,-0.58927,0.68668,0.42572,475.17,0.62222,0.049593,0.78127,-19.189,#7,-0.67396,0.48582,-0.55656,239.68,0.4482,-0.32999,-0.8308,362.57,-0.58727,-0.80937,0.0046558,300.22> |
| 2324 | | > view matrix models |
| 2325 | | > #5,0.46109,0.74604,-0.48044,-322.46,-0.54373,0.66542,0.51144,463.26,0.70125,0.025407,0.71246,-60.599,#7,-0.62626,0.51461,-0.58564,239.69,0.41158,-0.41974,-0.80896,363.17,-0.66212,-0.74766,0.051065,299.25> |
| 2326 | | > ui mousemode right "translate selected models"> view matrix models |
| 2327 | | > #5,0.46109,0.74604,-0.48044,-319.66,-0.54373,0.66542,0.51144,457.08,0.70125,0.025407,0.71246,-62.663,#7,-0.62626,0.51461,-0.58564,242.49,0.41158,-0.41974,-0.80896,356.99,-0.66212,-0.74766,0.051065,297.18> |
| 2328 | | > view matrix models |
| 2329 | | > #5,0.46109,0.74604,-0.48044,-318.48,-0.54373,0.66542,0.51144,456.87,0.70125,0.025407,0.71246,-67.025,#7,-0.62626,0.51461,-0.58564,243.67,0.41158,-0.41974,-0.80896,356.78,-0.66212,-0.74766,0.051065,292.82> |
| 2330 | | > view matrix models |
| 2331 | | > #5,0.46109,0.74604,-0.48044,-314.54,-0.54373,0.66542,0.51144,452.06,0.70125,0.025407,0.71246,-67.762,#7,-0.62626,0.51461,-0.58564,247.61,0.41158,-0.41974,-0.80896,351.97,-0.66212,-0.74766,0.051065,292.08> |
| 2332 | | > fitmap sel inMap #1Fit molecules AlphaFold Q9JIF7 (#5), AlphaFold P84078 |
| 2333 | | > (#7) to map postprocess.mrc (#1) using 3391 atoms |
| 2334 | | average map value = 0.006379, steps = 2000 |
| 2335 | | shifted from previous position = 67.3 |
| 2336 | | rotated from previous position = 13.3 degrees |
| 2337 | | atoms outside contour = 2933, contour level = 0.0076678 |
| 2338 | | |
| 2339 | | Position of AlphaFold Q9JIF7 (#5) relative to postprocess.mrc (#1) |
| 2340 | | coordinates: |
| 2341 | | Matrix rotation and translation |
| 2342 | | 0.44864812 0.85024754 -0.27530707 -329.44673535 |
| 2343 | | -0.61386395 0.51706217 0.59650461 550.06356967 |
| 2344 | | 0.64952745 -0.09861958 0.75391528 9.22943609 |
| 2345 | | Axis -0.37251122 -0.49561105 -0.78460505 |
| 2346 | | Axis point 271.63371182 632.46002380 0.00000000 |
| 2347 | | Rotation angle (degrees) 68.91130081 |
| 2348 | | Shift along axis -157.13644207 |
| 2349 | | |
| 2350 | | Position of AlphaFold P84078 (#7) relative to postprocess.mrc (#1) |
| 2351 | | coordinates: |
| 2352 | | Matrix rotation and translation |
| 2353 | | -0.62787187 0.32023832 -0.70938306 250.06408612 |
| 2354 | | 0.51464398 -0.51292383 -0.68705947 351.06664711 |
| 2355 | | -0.58388225 -0.79646504 0.15724172 292.22359140 |
| 2356 | | Axis -0.42743859 -0.49032137 0.75952696 |
| 2357 | | Axis point 193.59344878 279.40290037 0.00000000 |
| 2358 | | Rotation angle (degrees) 172.64722909 |
| 2359 | | Shift along axis -57.07082358 |
| 2360 | | |
| 2361 | | > view matrix models |
| 2362 | | > #5,0.44865,0.85025,-0.27531,-336.59,-0.61386,0.51706,0.5965,546.49,0.64953,-0.09862,0.75392,3.5019,#7,-0.62787,0.32024,-0.70938,242.92,0.51464,-0.51292,-0.68706,347.49,-0.58388,-0.79647,0.15724,286.5> |
| 2363 | | > volume #1 level 0.006838> ui mousemode right "rotate selected models"> view |
| 2364 | | > matrix models |
| 2365 | | > #5,0.64185,0.35969,-0.67724,-301.3,-0.33561,0.92585,0.17367,210.96,0.68949,0.11582,0.71497,-98.634,#7,-0.72944,0.66664,-0.15332,236.09,0.14015,-0.07373,-0.98738,344.84,-0.66953,-0.74172,-0.039649,287.12> |
| 2366 | | > ui mousemode right "translate selected models"> view matrix models |
| 2367 | | > #5,0.64185,0.35969,-0.67724,-291.82,-0.33561,0.92585,0.17367,216.24,0.68949,0.11582,0.71497,-97.428,#7,-0.72944,0.66664,-0.15332,245.57,0.14015,-0.07373,-0.98738,350.12,-0.66953,-0.74172,-0.039649,288.32> |
| 2368 | | > view matrix models |
| 2369 | | > #5,0.64185,0.35969,-0.67724,-292.85,-0.33561,0.92585,0.17367,215.82,0.68949,0.11582,0.71497,-97.348,#7,-0.72944,0.66664,-0.15332,244.54,0.14015,-0.07373,-0.98738,349.7,-0.66953,-0.74172,-0.039649,288.4> |
| 2370 | | > view matrix models |
| 2371 | | > #5,0.64185,0.35969,-0.67724,-293.69,-0.33561,0.92585,0.17367,219.17,0.68949,0.11582,0.71497,-95.847,#7,-0.72944,0.66664,-0.15332,243.7,0.14015,-0.07373,-0.98738,353.04,-0.66953,-0.74172,-0.039649,289.91> |
| 2372 | | > view matrix models |
| 2373 | | > #5,0.64185,0.35969,-0.67724,-294.11,-0.33561,0.92585,0.17367,218.78,0.68949,0.11582,0.71497,-97.168,#7,-0.72944,0.66664,-0.15332,243.29,0.14015,-0.07373,-0.98738,352.65,-0.66953,-0.74172,-0.039649,288.58> |
| 2374 | | > ui mousemode right "translate selected models"> view matrix models |
| 2375 | | > #5,0.64185,0.35969,-0.67724,-298.59,-0.33561,0.92585,0.17367,215.26,0.68949,0.11582,0.71497,-99.717,#7,-0.72944,0.66664,-0.15332,238.8,0.14015,-0.07373,-0.98738,349.14,-0.66953,-0.74172,-0.039649,286.03> |
| 2376 | | > ui mousemode right "rotate selected models"> view matrix models |
| 2377 | | > #5,0.54906,0.059004,-0.83369,-150.22,-0.03859,0.99823,0.045234,11.057,0.83489,0.0073364,0.55037,-155.91,#7,-0.58181,0.80196,0.13547,235.99,-0.1703,0.042744,-0.98446,347.57,-0.79529,-0.59585,0.1117,283.55> |
| 2378 | | > ui mousemode right "translate selected models"> view matrix models |
| 2379 | | > #5,0.54906,0.059004,-0.83369,-141.32,-0.03859,0.99823,0.045234,18.757,0.83489,0.0073364,0.55037,-154.01,#7,-0.58181,0.80196,0.13547,244.89,-0.1703,0.042744,-0.98446,355.27,-0.79529,-0.59585,0.1117,285.45> |
| 2380 | | > view matrix models |
| 2381 | | > #5,0.54906,0.059004,-0.83369,-143.94,-0.03859,0.99823,0.045234,17.226,0.83489,0.0073364,0.55037,-153.35,#7,-0.58181,0.80196,0.13547,242.26,-0.1703,0.042744,-0.98446,353.73,-0.79529,-0.59585,0.1117,286.11> |
| 2382 | | > fitmap sel inMap #1Fit molecules AlphaFold Q9JIF7 (#5), AlphaFold P84078 |
| 2383 | | > (#7) to map postprocess.mrc (#1) using 3391 atoms |
| 2384 | | average map value = 0.006548, steps = 2000 |
| 2385 | | shifted from previous position = 258 |
| 2386 | | rotated from previous position = 39.9 degrees |
| 2387 | | atoms outside contour = 2731, contour level = 0.006838 |
| 2388 | | |
| 2389 | | Position of AlphaFold Q9JIF7 (#5) relative to postprocess.mrc (#1) |
| 2390 | | coordinates: |
| 2391 | | Matrix rotation and translation |
| 2392 | | 0.22428746 -0.36126596 -0.90508675 195.02323000 |
| 2393 | | 0.53371593 0.82261567 -0.19608866 -259.73434724 |
| 2394 | | 0.81537870 -0.43907899 0.37731577 12.95402397 |
| 2395 | | Axis -0.12432405 -0.88026230 0.45791027 |
| 2396 | | Axis point 174.57812190 0.00000000 94.74078612 |
| 2397 | | Rotation angle (degrees) 77.75399990 |
| 2398 | | Shift along axis 210.32005694 |
| 2399 | | |
| 2400 | | Position of AlphaFold P84078 (#7) relative to postprocess.mrc (#1) |
| 2401 | | coordinates: |
| 2402 | | Matrix rotation and translation |
| 2403 | | -0.17905812 0.85607757 0.48483955 249.94431746 |
| 2404 | | -0.70202348 0.23408177 -0.67258365 352.78061951 |
| 2405 | | -0.68927587 -0.46080031 0.55907231 291.03197901 |
| 2406 | | Axis 0.10791967 0.59830087 -0.79397067 |
| 2407 | | Axis point 325.32005194 156.97099682 -0.00000000 |
| 2408 | | Rotation angle (degrees) 101.12511134 |
| 2409 | | Shift along axis 6.97200511 |
| 2410 | | |
| 2411 | | > view matrix models |
| 2412 | | > #5,0.22429,-0.36127,-0.90509,195.35,0.53372,0.82262,-0.19609,-260.19,0.81538,-0.43908,0.37732,14.033,#7,-0.17906,0.85608,0.48484,250.27,-0.70202,0.23408,-0.67258,352.32,-0.68928,-0.4608,0.55907,292.11> |
| 2413 | | > ui mousemode right "rotate selected models"> view matrix models |
| 2414 | | > #5,0.70978,0.63664,0.3015,-346.75,-0.55163,0.76852,-0.32417,366.41,-0.43809,0.063771,0.89667,585.7,#7,-0.8152,-0.28709,-0.50302,265.81,0.3645,0.42064,-0.83078,353.4,0.4501,-0.8606,-0.23826,302.65> |
| 2415 | | > view matrix models |
| 2416 | | > #5,0.66322,0.65557,0.36106,-322.61,-0.53819,0.753,-0.37862,360.26,-0.52009,0.056794,0.85222,631.48,#7,-0.77134,-0.34197,-0.53675,266.59,0.35247,0.47268,-0.80767,352.76,0.5299,-0.81218,-0.24406,302.38> |
| 2417 | | > ui mousemode right "translate selected models"> view matrix models |
| 2418 | | > #5,0.66322,0.65557,0.36106,-337.36,-0.53819,0.753,-0.37862,356.84,-0.52009,0.056794,0.85222,616.61,#7,-0.77134,-0.34197,-0.53675,251.84,0.35247,0.47268,-0.80767,349.34,0.5299,-0.81218,-0.24406,287.51> |
| 2419 | | > view matrix models |
| 2420 | | > #5,0.66322,0.65557,0.36106,-338.79,-0.53819,0.753,-0.37862,355.48,-0.52009,0.056794,0.85222,617.05,#7,-0.77134,-0.34197,-0.53675,250.41,0.35247,0.47268,-0.80767,347.98,0.5299,-0.81218,-0.24406,287.95> |
| 2421 | | > ui mousemode right "translate selected models"> ui mousemode right "rotate |
| 2422 | | > selected models"> view matrix models |
| 2423 | | > #5,0.2758,-0.8891,0.36528,432.91,0.72305,-0.058499,-0.68831,-94.846,0.63335,0.45395,0.62673,-197.02,#7,-0.06808,-0.45564,0.88756,243.51,-0.72132,0.63708,0.27172,337.87,-0.68925,-0.62171,-0.37203,285.07> |
| 2424 | | > view matrix models |
| 2425 | | > #5,0.061441,-0.99715,0.043751,569.33,0.38122,0.063955,0.92227,175.75,-0.92244,-0.039987,0.38406,845.38,#7,0.15128,-0.1325,0.97957,240.38,-0.34927,-0.93422,-0.072424,354.81,0.92473,-0.33118,-0.1876,283.91> |
| 2426 | | > view matrix models |
| 2427 | | > #5,-0.7462,-0.66541,-0.02044,905.19,-0.31624,0.32729,0.89043,475.81,-0.58581,0.67091,-0.45465,337.89,#7,0.86797,0.007227,0.49657,243.37,0.27545,-0.83901,-0.46925,357.5,0.41323,0.54407,-0.73022,278.66> |
| 2428 | | > view matrix models |
| 2429 | | > #5,-0.63461,-0.77228,-0.029406,879.23,-0.46761,0.3534,0.81022,546.54,-0.61532,0.52792,-0.58539,395.94,#7,0.78106,0.00043442,0.62446,242.47,0.41464,-0.74809,-0.51811,357.22,0.46692,0.6636,-0.58448,276.74> |
| 2430 | | > ui mousemode right "translate selected models"> view matrix models |
| 2431 | | > #5,-0.63461,-0.77228,-0.029406,884.6,-0.46761,0.3534,0.81022,541.46,-0.61532,0.52792,-0.58539,415.9,#7,0.78106,0.00043442,0.62446,247.84,0.41464,-0.74809,-0.51811,352.14,0.46692,0.6636,-0.58448,296.71> |
| 2432 | | > ui mousemode right "translate selected models"> ui mousemode right "rotate |
| 2433 | | > selected models"> view matrix models |
| 2434 | | > #5,-0.82896,-0.42798,-0.36008,847.56,0.24322,-0.85558,0.45698,542.55,-0.50366,0.29124,0.81333,541.12,#7,0.88545,0.37022,0.28091,246.87,-0.03966,-0.54206,0.8394,340.89,0.46304,-0.75439,-0.46528,308.7> |
| 2435 | | > view matrix models |
| 2436 | | > #5,-0.59898,0.79915,0.050885,309.59,-0.63535,-0.51296,0.57723,928.58,0.4874,0.31342,0.81499,-29.926,#7,0.41919,0.053021,-0.90635,256.52,0.75134,-0.58068,0.31353,345.88,-0.50967,-0.8124,-0.28325,306.47> |
| 2437 | | > view matrix models |
| 2438 | | > #5,0.3685,0.76002,-0.53532,-269.99,-0.91323,0.40363,-0.055587,712.28,0.17383,0.50936,0.84282,80.444,#7,-0.54093,0.57584,-0.61303,248.38,0.80507,0.14353,-0.57555,345.12,-0.24344,-0.80487,-0.54123,308.48> |
| 2439 | | > view matrix models |
| 2440 | | > #5,0.41519,0.70403,-0.57616,-279.58,-0.77489,0.60549,0.18146,579.3,0.47661,0.37112,0.79694,-45.734,#7,-0.57639,0.60892,-0.54498,247.59,0.63691,-0.083088,-0.76645,348.1,-0.51198,-0.78887,-0.33993,306.62> |
| 2441 | | > ui mousemode right "translate selected models"> view matrix models |
| 2442 | | > #5,0.41519,0.70403,-0.57616,-278.89,-0.77489,0.60549,0.18146,587.01,0.47661,0.37112,0.79694,-58.465,#7,-0.57639,0.60892,-0.54498,248.29,0.63691,-0.083088,-0.76645,355.81,-0.51198,-0.78887,-0.33993,293.89> |
| 2443 | | > view matrix models |
| 2444 | | > #5,0.41519,0.70403,-0.57616,-281.13,-0.77489,0.60549,0.18146,585.25,0.47661,0.37112,0.79694,-62.233,#7,-0.57639,0.60892,-0.54498,246.05,0.63691,-0.083088,-0.76645,354.05,-0.51198,-0.78887,-0.33993,290.12> |
| 2445 | | > view matrix models |
| 2446 | | > #5,0.41519,0.70403,-0.57616,-281.48,-0.77489,0.60549,0.18146,586.28,0.47661,0.37112,0.79694,-63.996,#7,-0.57639,0.60892,-0.54498,245.7,0.63691,-0.083088,-0.76645,355.08,-0.51198,-0.78887,-0.33993,288.35> |
| 2447 | | > fitmap sel inMap #1Fit molecules AlphaFold Q9JIF7 (#5), AlphaFold P84078 |
| 2448 | | > (#7) to map postprocess.mrc (#1) using 3391 atoms |
| 2449 | | average map value = 0.006232, steps = 2000 |
| 2450 | | shifted from previous position = 208 |
| 2451 | | rotated from previous position = 32.9 degrees |
| 2452 | | atoms outside contour = 2802, contour level = 0.006838 |
| 2453 | | |
| 2454 | | Position of AlphaFold Q9JIF7 (#5) relative to postprocess.mrc (#1) |
| 2455 | | coordinates: |
| 2456 | | Matrix rotation and translation |
| 2457 | | 0.49426653 0.86558393 -0.08040543 -344.35273626 |
| 2458 | | -0.86785105 0.49667874 0.01203166 664.87484119 |
| 2459 | | 0.05035008 0.06383309 0.99668961 305.04246661 |
| 2460 | | Axis 0.02978581 -0.07518439 -0.99672469 |
| 2461 | | Axis point 381.74609833 608.33370844 0.00000000 |
| 2462 | | Rotation angle (degrees) 60.40819812 |
| 2463 | | Shift along axis -364.28839048 |
| 2464 | | |
| 2465 | | Position of AlphaFold P84078 (#7) relative to postprocess.mrc (#1) |
| 2466 | | coordinates: |
| 2467 | | Matrix rotation and translation |
| 2468 | | -0.66793058 0.12502192 -0.73364723 253.87954964 |
| 2469 | | 0.74386548 0.08157435 -0.66333233 352.68043687 |
| 2470 | | -0.02308428 -0.98879479 -0.14748549 291.96412449 |
| 2471 | | Axis -0.32647729 -0.71277854 0.62077317 |
| 2472 | | Axis point -26.30236893 0.00000000 337.75189081 |
| 2473 | | Rotation angle (degrees) 150.10277176 |
| 2474 | | Shift along axis -153.02546054 |
| 2475 | | |
| 2476 | | > view matrix models |
| 2477 | | > #5,0.49427,0.86558,-0.080405,-352.99,-0.86785,0.49668,0.012032,666.63,0.05035,0.063833,0.99669,306.76,#7,-0.66793,0.12502,-0.73365,245.24,0.74387,0.081574,-0.66333,354.44,-0.023084,-0.98879,-0.14749,293.68> |
| 2478 | | > view matrix models |
| 2479 | | > #5,0.49427,0.86558,-0.080405,-354.63,-0.86785,0.49668,0.012032,665.67,0.05035,0.063833,0.99669,304.22,#7,-0.66793,0.12502,-0.73365,243.6,0.74387,0.081574,-0.66333,353.47,-0.023084,-0.98879,-0.14749,291.14> |
| 2480 | | > view matrix models |
| 2481 | | > #5,0.49427,0.86558,-0.080405,-353.85,-0.86785,0.49668,0.012032,665.32,0.05035,0.063833,0.99669,305.73,#7,-0.66793,0.12502,-0.73365,244.38,0.74387,0.081574,-0.66333,353.12,-0.023084,-0.98879,-0.14749,292.65> |
| 2482 | | > ui mousemode right "rotate selected models"> view matrix models |
| 2483 | | > #5,0.59564,0.78626,0.1643,-364.93,-0.79935,0.56008,0.2176,619.08,0.079066,-0.26095,0.96211,402.72,#7,-0.74059,-0.13111,-0.65904,246.09,0.67177,-0.12148,-0.73073,355.26,0.015749,-0.9839,0.17805,290.59> |
| 2484 | | > view matrix models |
| 2485 | | > #5,0.61081,0.63952,0.46683,-298.64,-0.73957,0.67137,0.047949,532.75,-0.28275,-0.37454,0.88305,643,#7,-0.71257,-0.44546,-0.54205,248.22,0.58327,0.053267,-0.81053,354.05,0.38993,-0.89372,0.22186,290.12> |
| 2486 | | > view matrix models |
| 2487 | | > #5,0.58754,0.80917,-0.0055779,-381.16,-0.71413,0.52175,0.46669,602.88,0.38054,-0.27022,0.8844,228.9,#7,-0.74423,0.040286,-0.66671,244.59,0.60646,-0.37752,-0.69978,357.26,-0.27989,-0.92513,0.25653,289.08> |
| 2488 | | > view matrix models |
| 2489 | | > #5,0.59766,0.78541,-0.16105,-390.01,-0.59194,0.56775,0.57207,524.88,0.54075,-0.24657,0.80424,123.44,#7,-0.75528,0.19229,-0.62656,242.95,0.48161,-0.48557,-0.72957,358.22,-0.44453,-0.85279,0.27413,288.05> |
| 2490 | | > ui mousemode right "translate selected models"> view matrix models |
| 2491 | | > #5,0.59766,0.78541,-0.16105,-390.28,-0.59194,0.56775,0.57207,520.84,0.54075,-0.24657,0.80424,131.04,#7,-0.75528,0.19229,-0.62656,242.68,0.48161,-0.48557,-0.72957,354.18,-0.44453,-0.85279,0.27413,295.66> |
| 2492 | | > ui mousemode right "translate selected models"> view matrix models |
| 2493 | | > #5,0.59766,0.78541,-0.16105,-387.3,-0.59194,0.56775,0.57207,520.83,0.54075,-0.24657,0.80424,129.09,#7,-0.75528,0.19229,-0.62656,245.67,0.48161,-0.48557,-0.72957,354.17,-0.44453,-0.85279,0.27413,293.71> |
| 2494 | | > view matrix models |
| 2495 | | > #5,0.59766,0.78541,-0.16105,-388.87,-0.59194,0.56775,0.57207,517.58,0.54075,-0.24657,0.80424,128.32,#7,-0.75528,0.19229,-0.62656,244.1,0.48161,-0.48557,-0.72957,350.92,-0.44453,-0.85279,0.27413,292.94> |
| 2496 | | > view matrix models |
| 2497 | | > #5,0.59766,0.78541,-0.16105,-387.38,-0.59194,0.56775,0.57207,518.01,0.54075,-0.24657,0.80424,126.64,#7,-0.75528,0.19229,-0.62656,245.59,0.48161,-0.48557,-0.72957,351.35,-0.44453,-0.85279,0.27413,291.26> |
| 2498 | | > fitmap sel inMap #1Fit molecules AlphaFold Q9JIF7 (#5), AlphaFold P84078 |
| 2499 | | > (#7) to map postprocess.mrc (#1) using 3391 atoms |
| 2500 | | average map value = 0.006304, steps = 2000 |
| 2501 | | shifted from previous position = 21.9 |
| 2502 | | rotated from previous position = 4.12 degrees |
| 2503 | | atoms outside contour = 2805, contour level = 0.006838 |
| 2504 | | |
| 2505 | | Position of AlphaFold Q9JIF7 (#5) relative to postprocess.mrc (#1) |
| 2506 | | coordinates: |
| 2507 | | Matrix rotation and translation |
| 2508 | | 0.63160113 0.74678337 -0.20831371 -392.06980546 |
| 2509 | | -0.55856585 0.62464466 0.54573182 477.26828316 |
| 2510 | | 0.53766549 -0.22832791 0.81165397 121.78106461 |
| 2511 | | Axis -0.45774393 -0.44113837 -0.77192450 |
| 2512 | | Axis point 263.86758263 731.84909322 0.00000000 |
| 2513 | | Rotation angle (degrees) 57.72727694 |
| 2514 | | Shift along axis -125.07956684 |
| 2515 | | |
| 2516 | | Position of AlphaFold P84078 (#7) relative to postprocess.mrc (#1) |
| 2517 | | coordinates: |
| 2518 | | Matrix rotation and translation |
| 2519 | | -0.78219153 0.23399400 -0.57742810 249.19255277 |
| 2520 | | 0.43600266 -0.45646565 -0.77559061 351.79976917 |
| 2521 | | -0.44505964 -0.85842060 0.25502156 290.77365896 |
| 2522 | | Axis -0.32441286 -0.51843579 0.79118937 |
| 2523 | | Axis point 170.65668667 280.82372829 0.00000000 |
| 2524 | | Rotation angle (degrees) 172.66552652 |
| 2525 | | Shift along axis -33.16983103 |
| 2526 | | |
| 2527 | | > hide #7 models> select subtract #71934 atoms, 1972 bonds, 238 residues, 1 |
| 2528 | | > model selected |
| 2529 | | > show #5 models> show #4 models> show #3 models> select add #73391 atoms, |
| 2530 | | > 3455 bonds, 419 residues, 2 models selected |
| 2531 | | > show #7 models> view matrix models |
| 2532 | | > #5,0.6316,0.74678,-0.20831,-292.46,-0.55857,0.62464,0.54573,428.58,0.53767,-0.22833,0.81165,182.31,#7,-0.78219,0.23399,-0.57743,348.81,0.436,-0.45647,-0.77559,303.11,-0.44506,-0.85842,0.25502,351.3> |
| 2533 | | > view matrix models |
| 2534 | | > #5,0.6316,0.74678,-0.20831,-284.18,-0.55857,0.62464,0.54573,440.14,0.53767,-0.22833,0.81165,179.11,#7,-0.78219,0.23399,-0.57743,357.08,0.436,-0.45647,-0.77559,314.67,-0.44506,-0.85842,0.25502,348.1> |
| 2535 | | > volume #1 level 0.008913> ui mousemode right "rotate selected models"> view |
| 2536 | | > matrix models |
| 2537 | | > #5,0.63195,0.73976,-0.23108,-283.85,-0.52078,0.62615,0.58029,431.7,0.57397,-0.24637,0.78094,172.09,#7,-0.78195,0.25602,-0.56833,356.54,0.40014,-0.49293,-0.7726,325.92,-0.47795,-0.83155,0.283,357.1> |
| 2538 | | > view matrix models |
| 2539 | | > #5,0.40608,0.87634,-0.25909,-252.01,-0.912,0.40659,-0.054141,543.3,0.057898,0.25828,0.96433,220.46,#7,-0.59113,0.30885,-0.74511,311.8,0.80331,0.14227,-0.57832,177.81,-0.072604,-0.94041,-0.3322,284.12> |
| 2540 | | > view matrix models |
| 2541 | | > #5,0.43696,0.86229,-0.25597,-257.59,-0.88687,0.46051,0.03736,531.74,0.15009,0.21069,0.96596,204.43,#7,-0.61822,0.30272,-0.72537,318.41,0.77105,0.054404,-0.63445,194.05,-0.1526,-0.95152,-0.26705,302.95> |
| 2542 | | > view matrix models |
| 2543 | | > #5,0.62956,0.71297,-0.30874,-281.54,-0.44846,0.65796,0.60495,408.43,0.63446,-0.24239,0.73397,154.9,#7,-0.77707,0.33111,-0.53528,352.85,0.32379,-0.51899,-0.79108,353.49,-0.53973,-0.78805,0.29608,378.63> |
| 2544 | | > ui mousemode right "translate selected models"> view matrix models |
| 2545 | | > #5,0.62956,0.71297,-0.30874,-274.52,-0.44846,0.65796,0.60495,406.86,0.63446,-0.24239,0.73397,108.93,#7,-0.77707,0.33111,-0.53528,359.87,0.32379,-0.51899,-0.79108,351.92,-0.53973,-0.78805,0.29608,332.66> |
| 2546 | | > ui mousemode right "rotate selected models"> view matrix models |
| 2547 | | > #5,0.45327,0.82091,-0.34735,-250.42,-0.83142,0.24886,-0.4968,532.21,-0.32138,0.51397,0.79533,221.4,#7,-0.62908,0.38911,-0.67295,325.76,0.74019,0.56429,-0.36565,183.97,0.23746,-0.72813,-0.64299,173.91> |
| 2548 | | > ui mousemode right "rotate selected models"> ui mousemode right "translate |
| 2549 | | > selected models"> view matrix models |
| 2550 | | > #5,0.45327,0.82091,-0.34735,-244.8,-0.83142,0.24886,-0.4968,566.76,-0.32138,0.51397,0.79533,212.32,#7,-0.62908,0.38911,-0.67295,331.38,0.74019,0.56429,-0.36565,218.51,0.23746,-0.72813,-0.64299,164.84> |
| 2551 | | > ui mousemode right "translate selected models"> view matrix models |
| 2552 | | > #5,0.45327,0.82091,-0.34735,-204.98,-0.83142,0.24886,-0.4968,685.14,-0.32138,0.51397,0.79533,339.22,#7,-0.62908,0.38911,-0.67295,371.2,0.74019,0.56429,-0.36565,336.89,0.23746,-0.72813,-0.64299,291.74> |
| 2553 | | > view matrix models |
| 2554 | | > #5,0.45327,0.82091,-0.34735,-225.24,-0.83142,0.24886,-0.4968,639.6,-0.32138,0.51397,0.79533,355.95,#7,-0.62908,0.38911,-0.67295,350.95,0.74019,0.56429,-0.36565,291.36,0.23746,-0.72813,-0.64299,308.46> |
| 2555 | | > view matrix models |
| 2556 | | > #5,0.45327,0.82091,-0.34735,-227.45,-0.83142,0.24886,-0.4968,629.87,-0.32138,0.51397,0.79533,380.08,#7,-0.62908,0.38911,-0.67295,348.74,0.74019,0.56429,-0.36565,281.62,0.23746,-0.72813,-0.64299,332.6> |
| 2557 | | > view matrix models |
| 2558 | | > #5,0.45327,0.82091,-0.34735,-218.84,-0.83142,0.24886,-0.4968,647.15,-0.32138,0.51397,0.79533,373.95,#7,-0.62908,0.38911,-0.67295,357.34,0.74019,0.56429,-0.36565,298.9,0.23746,-0.72813,-0.64299,326.46> |
| 2559 | | > view matrix models |
| 2560 | | > #5,0.45327,0.82091,-0.34735,-221.31,-0.83142,0.24886,-0.4968,646.06,-0.32138,0.51397,0.79533,381.19,#7,-0.62908,0.38911,-0.67295,354.87,0.74019,0.56429,-0.36565,297.81,0.23746,-0.72813,-0.64299,333.71> |
| 2561 | | > view matrix models |
| 2562 | | > #5,0.45327,0.82091,-0.34735,-222.46,-0.83142,0.24886,-0.4968,654.54,-0.32138,0.51397,0.79533,383.99,#7,-0.62908,0.38911,-0.67295,353.72,0.74019,0.56429,-0.36565,306.29,0.23746,-0.72813,-0.64299,336.51> |
| 2563 | | > view matrix models |
| 2564 | | > #5,0.45327,0.82091,-0.34735,-222.54,-0.83142,0.24886,-0.4968,652.85,-0.32138,0.51397,0.79533,385.1,#7,-0.62908,0.38911,-0.67295,353.65,0.74019,0.56429,-0.36565,304.6,0.23746,-0.72813,-0.64299,337.62> |
| 2565 | | > fitmap sel inMap #1Fit molecules AlphaFold Q9JIF7 (#5), AlphaFold P84078 |
| 2566 | | > (#7) to map postprocess.mrc (#1) using 3391 atoms |
| 2567 | | average map value = 0.008387, steps = 2000 |
| 2568 | | shifted from previous position = 135 |
| 2569 | | rotated from previous position = 20.3 degrees |
| 2570 | | atoms outside contour = 2803, contour level = 0.0089126 |
| 2571 | | |
| 2572 | | Position of AlphaFold Q9JIF7 (#5) relative to postprocess.mrc (#1) |
| 2573 | | coordinates: |
| 2574 | | Matrix rotation and translation |
| 2575 | | 0.55409690 0.62511695 -0.54973213 -218.65297228 |
| 2576 | | -0.83234882 0.40563315 -0.37769984 602.45005605 |
| 2577 | | -0.01311700 0.66685121 0.74507543 146.75071393 |
| 2578 | | Axis 0.55807704 -0.28669981 -0.77868687 |
| 2579 | | Axis point 393.46986018 265.29039526 -0.00000000 |
| 2580 | | Rotation angle (degrees) 69.36565182 |
| 2581 | | Shift along axis -409.02037338 |
| 2582 | | |
| 2583 | | Position of AlphaFold P84078 (#7) relative to postprocess.mrc (#1) |
| 2584 | | coordinates: |
| 2585 | | Matrix rotation and translation |
| 2586 | | -0.69444730 0.56770586 -0.44210067 356.86595497 |
| 2587 | | 0.71286713 0.45931644 -0.52995175 302.68762913 |
| 2588 | | -0.09779261 -0.68318260 -0.72366991 332.32740848 |
| 2589 | | Axis -0.37941968 -0.85255192 0.35943835 |
| 2590 | | Axis point 85.30361552 0.00000000 245.10157583 |
| 2591 | | Rotation angle (degrees) 168.35027896 |
| 2592 | | Shift along axis -274.00766921 |
| 2593 | | |
| 2594 | | > ui mousemode right "rotate selected models"> view matrix models |
| 2595 | | > #5,0.38512,0.91817,0.09297,-196.08,-0.61509,0.18027,0.76758,634.48,0.688,-0.3528,0.63418,136.81,#7,-0.56549,-0.036498,-0.82395,348.16,0.5934,-0.71183,-0.37573,301.8,-0.5728,-0.7014,0.42419,357.36> |
| 2596 | | > view matrix models |
| 2597 | | > #5,0.26988,0.96152,-0.051356,-178.93,-0.48414,0.18161,0.85594,603.78,0.83233,-0.20614,0.51452,70.825,#7,-0.46775,0.11753,-0.87601,325.15,0.4687,-0.8073,-0.35858,339.96,-0.74935,-0.57832,0.32253,433.9> |
| 2598 | | > focus selUnknown command: focus sel |
| 2599 | | > ui mousemode right "rotate selected models"> ui mousemode right "translate |
| 2600 | | > selected models"> view matrix models |
| 2601 | | > #5,0.26988,0.96152,-0.051356,-155.72,-0.48414,0.18161,0.85594,605.27,0.83233,-0.20614,0.51452,71.95,#7,-0.46775,0.11753,-0.87601,348.35,0.4687,-0.8073,-0.35858,341.45,-0.74935,-0.57832,0.32253,435.02> |
| 2602 | | > view matrix models |
| 2603 | | > #5,0.26988,0.96152,-0.051356,-227.82,-0.48414,0.18161,0.85594,543.16,0.83233,-0.20614,0.51452,120.55,#7,-0.46775,0.11753,-0.87601,276.25,0.4687,-0.8073,-0.35858,279.34,-0.74935,-0.57832,0.32253,483.63> |
| 2604 | | > select subtract #71934 atoms, 1972 bonds, 238 residues, 1 model selected |
| 2605 | | > select add #73391 atoms, 3455 bonds, 419 residues, 2 models selected |
| 2606 | | > select clear> hide #5 models> show #5 models> hide #5 models> show #5 |
| 2607 | | > models> select add #71457 atoms, 1483 bonds, 181 residues, 1 model selected |
| 2608 | | > view matrix models |
| 2609 | | > #7,-0.46775,0.11753,-0.87601,264.54,0.4687,-0.8073,-0.35858,282.89,-0.74935,-0.57832,0.32253,480.54> |
| 2610 | | > view matrix models |
| 2611 | | > #7,-0.46775,0.11753,-0.87601,312.97,0.4687,-0.8073,-0.35858,321.84,-0.74935,-0.57832,0.32253,339.06> |
| 2612 | | > view matrix models |
| 2613 | | > #7,-0.46775,0.11753,-0.87601,356.18,0.4687,-0.8073,-0.35858,311.73,-0.74935,-0.57832,0.32253,325.59> |
| 2614 | | > ui mousemode right "rotate selected models"> view matrix models |
| 2615 | | > #7,-0.31289,0.30669,-0.89891,354.87,0.77534,0.62912,-0.05524,297.38,0.54858,-0.71425,-0.43463,333.76> |
| 2616 | | > view matrix models |
| 2617 | | > #7,-0.32942,0.33444,-0.88297,354.5,0.79728,0.59949,-0.070384,297.77,0.50579,-0.72716,-0.46413,333.99> |
| 2618 | | > ui mousemode right "translate selected models"> view matrix models |
| 2619 | | > #7,-0.32942,0.33444,-0.88297,356.39,0.79728,0.59949,-0.070384,317.3,0.50579,-0.72716,-0.46413,340> |
| 2620 | | > view matrix models |
| 2621 | | > #7,-0.32942,0.33444,-0.88297,353.93,0.79728,0.59949,-0.070384,306.29,0.50579,-0.72716,-0.46413,336.94> |
| 2622 | | > ui mousemode right "rotate selected models"> view matrix models |
| 2623 | | > #7,-0.36734,0.92837,-0.056483,343.26,0.7376,0.32778,0.59035,304.43,0.56658,0.1752,-0.80517,331.1> |
| 2624 | | > view matrix models |
| 2625 | | > #7,0.96817,0.16059,-0.19199,353.21,0.24775,-0.50581,0.8263,309.63,0.035584,-0.84757,-0.52949,337.67> |
| 2626 | | > view matrix models |
| 2627 | | > #7,-0.44229,0.45848,-0.77083,351.91,0.81471,0.56474,-0.13157,307.02,0.375,-0.68619,-0.62331,337.37> |
| 2628 | | > view matrix models |
| 2629 | | > #7,-0.4761,0.85565,0.20294,342.08,0.87815,0.45036,0.16131,306.29,0.046626,0.25502,-0.96581,330.55> |
| 2630 | | > view matrix models |
| 2631 | | > #7,-0.65814,-0.599,-0.45613,359.07,-0.54692,0.79672,-0.25712,303.51,0.51742,0.080245,-0.85196,332.17> |
| 2632 | | > view matrix models |
| 2633 | | > #7,-0.94065,-0.24006,-0.23988,354,-0.067482,0.82504,-0.56104,305.98,0.33259,-0.51155,-0.79227,336.81> |
| 2634 | | > focus selUnknown command: focus sel |
| 2635 | | > fitmap sel inMap #1Fit molecule AlphaFold P84078 (#7) to map postprocess.mrc |
| 2636 | | > (#1) using 1457 atoms |
| 2637 | | average map value = 0.008691, steps = 80 |
| 2638 | | shifted from previous position = 2.77 |
| 2639 | | rotated from previous position = 17.2 degrees |
| 2640 | | atoms outside contour = 813, contour level = 0.0089126 |
| 2641 | | |
| 2642 | | Position of AlphaFold P84078 (#7) relative to postprocess.mrc (#1) |
| 2643 | | coordinates: |
| 2644 | | Matrix rotation and translation |
| 2645 | | -0.95086316 -0.13233492 -0.27990481 353.75859723 |
| 2646 | | -0.04679788 0.95509568 -0.29257849 304.12819349 |
| 2647 | | 0.30605423 -0.26510316 -0.91435830 333.82641064 |
| 2648 | | Axis 0.04634790 -0.98844918 0.14429168 |
| 2649 | | Axis point 155.79634475 0.00000000 217.07990743 |
| 2650 | | Rotation angle (degrees) 162.75830016 |
| 2651 | | Shift along axis -236.05092359 |
| 2652 | | |
| 2653 | | > view matrix models |
| 2654 | | > #7,0.89646,-0.11615,-0.42763,357.57,0.15108,0.98733,0.048544,301.99,0.41657,-0.10812,0.90265,321.02> |
| 2655 | | > view matrix models |
| 2656 | | > #7,0.24003,-0.9594,-0.14808,362.3,0.61142,0.030929,0.7907,306.62,-0.75402,-0.28033,0.59403,322.62> |
| 2657 | | > view matrix models |
| 2658 | | > #7,0.82938,0.2793,-0.48386,354.26,0.55336,-0.29144,0.78029,309.49,0.076921,-0.91491,-0.39627,336> |
| 2659 | | > fitmap sel inMap #1Fit molecule AlphaFold P84078 (#7) to map postprocess.mrc |
| 2660 | | > (#1) using 1457 atoms |
| 2661 | | average map value = 0.008533, steps = 104 |
| 2662 | | shifted from previous position = 5.88 |
| 2663 | | rotated from previous position = 26.3 degrees |
| 2664 | | atoms outside contour = 806, contour level = 0.0089126 |
| 2665 | | |
| 2666 | | Position of AlphaFold P84078 (#7) relative to postprocess.mrc (#1) |
| 2667 | | coordinates: |
| 2668 | | Matrix rotation and translation |
| 2669 | | 0.70793762 0.63970410 -0.29933753 354.19362259 |
| 2670 | | 0.63728879 -0.39588546 0.66116388 305.25131134 |
| 2671 | | 0.30444588 -0.65882725 -0.68793847 333.84744266 |
| 2672 | | Axis -0.90937970 -0.41596369 -0.00166398 |
| 2673 | | Axis point 0.00000000 150.36639145 138.65066871 |
| 2674 | | Rotation angle (degrees) 133.46751174 |
| 2675 | | Shift along axis -449.62546628 |
| 2676 | | |
| 2677 | | > view matrix models |
| 2678 | | > #7,0.65944,0.60816,-0.4419,355.31,0.75098,-0.50616,0.42407,307.94,0.034231,-0.61151,-0.7905,333.63> |
| 2679 | | > view matrix models |
| 2680 | | > #7,0.67477,0.61006,-0.41535,355.15,0.7183,-0.41358,0.55946,306.19,0.16952,-0.67585,-0.71728,333.97> |
| 2681 | | > view matrix models |
| 2682 | | > #7,0.99296,-0.033915,-0.11349,359.54,0.10378,-0.21285,0.97156,300.76,-0.057107,-0.9765,-0.20783,333.06> |
| 2683 | | > view matrix models |
| 2684 | | > #7,0.79178,-0.31663,-0.52233,364.35,-0.036918,-0.87839,0.47651,309.67,-0.60968,-0.35801,-0.70719,329.77> |
| 2685 | | > view matrix models |
| 2686 | | > #7,-0.084214,-0.71401,0.69505,358.74,0.043059,-0.69949,-0.71335,315.77,0.99552,-0.030146,0.089651,324.37> |
| 2687 | | > view matrix models |
| 2688 | | > #7,-0.72644,-0.50945,0.46125,357.34,-0.639,0.25371,-0.72616,306.16,0.25292,-0.82225,-0.50984,334.1> |
| 2689 | | > fitmap sel inMap #1Fit molecule AlphaFold P84078 (#7) to map postprocess.mrc |
| 2690 | | > (#1) using 1457 atoms |
| 2691 | | average map value = 0.009965, steps = 96 |
| 2692 | | shifted from previous position = 4.5 |
| 2693 | | rotated from previous position = 20.2 degrees |
| 2694 | | atoms outside contour = 674, contour level = 0.0089126 |
| 2695 | | |
| 2696 | | Position of AlphaFold P84078 (#7) relative to postprocess.mrc (#1) |
| 2697 | | coordinates: |
| 2698 | | Matrix rotation and translation |
| 2699 | | -0.82078799 -0.53173104 0.20873226 354.88942843 |
| 2700 | | -0.51806242 0.53896583 -0.66417403 308.12027683 |
| 2701 | | 0.24066240 -0.65328242 -0.71784655 333.36238943 |
| 2702 | | Axis 0.29921665 -0.87719085 0.37550715 |
| 2703 | | Axis point 228.19071418 0.00000000 234.53252280 |
| 2704 | | Rotation angle (degrees) 178.95714657 |
| 2705 | | Shift along axis -38.91150075 |
| 2706 | | |
| 2707 | | > volume #1 level 0.01071> select subtract #7Nothing selected |
| 2708 | | > volume #1 level 0.009051> volume #1 level 0.008083> select add #22 models |
| 2709 | | > selected |
| 2710 | | > select subtract #2Nothing selected |
| 2711 | | > show #!2 models> volume #2 level 0.09363> volume #2 level 0.1809> hide #!2 |
| 2712 | | > models> hide #5 models> show #5 models> select add #57501 atoms, 7619 bonds, |
| 2713 | | > 953 residues, 1 model selected |
| 2714 | | > ui mousemode right zoom> ui mousemode right "translate selected models"> |
| 2715 | | > view matrix models |
| 2716 | | > #5,0.26988,0.96152,-0.051356,-138.83,-0.48414,0.18161,0.85594,363.4,0.83233,-0.20614,0.51452,412.62> |
| 2717 | | > view matrix models |
| 2718 | | > #5,0.26988,0.96152,-0.051356,215.52,-0.48414,0.18161,0.85594,313.06,0.83233,-0.20614,0.51452,481.6> |
| 2719 | | > view matrix models |
| 2720 | | > #5,0.26988,0.96152,-0.051356,87.067,-0.48414,0.18161,0.85594,304.38,0.83233,-0.20614,0.51452,348.45> |
| 2721 | | > view matrix models |
| 2722 | | > #5,0.26988,0.96152,-0.051356,199.47,-0.48414,0.18161,0.85594,297.27,0.83233,-0.20614,0.51452,248.55> |
| 2723 | | > view matrix models |
| 2724 | | > #5,0.26988,0.96152,-0.051356,281.71,-0.48414,0.18161,0.85594,328.06,0.83233,-0.20614,0.51452,368.25> |
| 2725 | | > ui mousemode right "rotate selected models"> view matrix models |
| 2726 | | > #5,0.60313,-0.5776,-0.5501,288.13,-0.33332,-0.80907,0.48405,332.63,-0.72466,-0.10859,-0.6805,378.28> |
| 2727 | | > view matrix models |
| 2728 | | > #5,0.083723,0.17341,-0.98128,289.92,-0.76391,0.64349,0.048538,332.57,0.63987,0.74555,0.18634,368.33> |
| 2729 | | > ui mousemode right "translate selected models"> view matrix models |
| 2730 | | > #5,0.083723,0.17341,-0.98128,246.28,-0.76391,0.64349,0.048538,203.76,0.63987,0.74555,0.18634,339.11> |
| 2731 | | > ui mousemode right "rotate selected models"> view matrix models |
| 2732 | | > #5,0.42104,-0.31907,-0.84907,246.08,-0.41555,0.76422,-0.49324,206.34,0.80626,0.5605,0.18918,339.26> |
| 2733 | | > view matrix models |
| 2734 | | > #5,0.27316,-0.96179,0.01842,242.35,0.48586,0.12142,-0.86556,208.8,0.83025,0.24539,0.50046,338> |
| 2735 | | > view matrix models |
| 2736 | | > #5,0.018184,-0.95114,0.30824,240.9,0.66648,-0.21828,-0.71286,208.35,0.7453,0.2184,0.62994,337.38> |
| 2737 | | > view matrix models |
| 2738 | | > #5,-0.86492,-0.14327,0.48102,239.29,0.34551,-0.86511,0.3636,203.59,0.36405,0.48068,0.79775,336.3> |
| 2739 | | > view matrix models |
| 2740 | | > #5,-0.73157,-0.37278,0.57082,239.05,0.52599,-0.8413,0.12468,204.76,0.43376,0.39146,0.81155,336.32> |
| 2741 | | > view matrix models |
| 2742 | | > #5,-0.1881,-0.86705,0.46136,240.06,0.71994,-0.44124,-0.53572,207.68,0.66806,0.23138,0.70722,336.99> |
| 2743 | | > view matrix models |
| 2744 | | > #5,0.24785,-0.96728,0.054255,242.18,0.51183,0.083186,-0.85505,208.78,0.82256,0.23969,0.5157,337.93> |
| 2745 | | > ui mousemode right "rotate selected models"> view matrix models |
| 2746 | | > #5,-0.084382,-0.94393,-0.31919,245.07,0.79715,0.12825,-0.59001,206.49,0.59786,-0.30423,0.74163,338.2> |
| 2747 | | > view matrix models |
| 2748 | | > #5,0.21946,-0.83157,-0.51022,245.51,0.67192,0.508,-0.53894,205.44,0.70736,-0.22456,0.67023,338.28> |
| 2749 | | > view matrix models |
| 2750 | | > #5,0.50938,-0.48951,-0.70776,245.45,0.33656,0.87026,-0.35967,203.97,0.792,-0.054996,0.60804,338.12> |
| 2751 | | > view matrix models |
| 2752 | | > #5,-0.10787,-0.94628,-0.30483,245.03,0.80101,0.09889,-0.59043,206.56,0.58886,-0.30787,0.74731,338.19> |
| 2753 | | > view matrix models |
| 2754 | | > #5,-0.27101,-0.95907,-0.082092,243.9,0.55729,-0.22587,0.79901,198.87,-0.78485,0.17079,0.59569,340.29> |
| 2755 | | > view matrix models |
| 2756 | | > #5,-0.72786,-0.54322,0.41849,240.44,0.34835,0.23275,0.90801,197.39,-0.59065,0.80668,0.019823,342.09> |
| 2757 | | > view matrix models |
| 2758 | | > #5,-0.41265,-0.34043,0.84488,236.68,0.80675,0.29409,0.51252,199.01,-0.42295,0.8931,0.15329,340.74> |
| 2759 | | > view matrix models |
| 2760 | | > #5,0.30768,-0.07732,0.94834,234.16,0.94345,0.15413,-0.29352,204.29,-0.12347,0.98502,0.12037,340.22> |
| 2761 | | > view matrix models |
| 2762 | | > #5,-0.3294,0.67309,0.66215,235.22,0.064826,0.71575,-0.69534,206.95,-0.94196,-0.18612,-0.2794,347.04> |
| 2763 | | > ui mousemode right "translate selected models"> view matrix models |
| 2764 | | > #5,-0.3294,0.67309,0.66215,274.07,0.064826,0.71575,-0.69534,330.47,-0.94196,-0.18612,-0.2794,373.87> |
| 2765 | | > ui mousemode right "rotate selected models"> view matrix models |
| 2766 | | > #5,0.10641,-0.80959,0.57726,277.53,-0.20523,0.55018,0.80944,321.69,-0.97291,-0.20461,-0.1076,372.87> |
| 2767 | | > ui mousemode right "translate selected models"> view matrix models |
| 2768 | | > #5,0.10641,-0.80959,0.57726,282.65,-0.20523,0.55018,0.80944,307.69,-0.97291,-0.20461,-0.1076,351.49> |
| 2769 | | > view matrix models |
| 2770 | | > #5,0.10641,-0.80959,0.57726,283.2,-0.20523,0.55018,0.80944,311.64,-0.97291,-0.20461,-0.1076,346.62> |
| 2771 | | > fitmap sel inMap #1Fit molecule AlphaFold Q9JIF7 (#5) to map postprocess.mrc |
| 2772 | | > (#1) using 7501 atoms |
| 2773 | | average map value = 0.007661, steps = 76 |
| 2774 | | shifted from previous position = 4.15 |
| 2775 | | rotated from previous position = 8.09 degrees |
| 2776 | | atoms outside contour = 4107, contour level = 0.0080828 |
| 2777 | | |
| 2778 | | Position of AlphaFold Q9JIF7 (#5) relative to postprocess.mrc (#1) |
| 2779 | | coordinates: |
| 2780 | | Matrix rotation and translation |
| 2781 | | 0.04650098 -0.73947641 0.67157448 285.03045903 |
| 2782 | | -0.16587164 0.65725218 0.73519124 314.41918325 |
| 2783 | | -0.98505037 -0.14558228 -0.09209529 347.45631534 |
| 2784 | | Axis -0.44893096 0.84438300 0.29236680 |
| 2785 | | Axis point 361.10500418 0.00000000 -71.56871887 |
| 2786 | | Rotation angle (degrees) 101.19630367 |
| 2787 | | Shift along axis 239.11590829 |
| 2788 | | |
| 2789 | | > select clear> volume #1 level 0.0067> volume #1 level 0.01196> rename #5 |
| 2790 | | > "bcop Q9JIF7"> ui tool show AlphaFoldFetching compressed Q7TNQ1 UniProt info |
| 2791 | | > from https://www.uniprot.org/uniprot/Q7TNQ1.xml |
| 2792 | | > alphafold match Q7TNQ1Fetching compressed AlphaFold Q7TNQ1 from |
| 2793 | | > https://alphafold.ebi.ac.uk/files/AF-Q7TNQ1-F1-model_v4.cif |
| 2794 | | 1 AlphaFold model found using UniProt identifier: Q7TNQ1 (UniProt Q7TNQ1) |
| 2795 | | | Sequence Similarity |
| 2796 | | --- |
| 2797 | | AlphaFold Model| Query Sequence| Identity %| Coverage % |
| 2798 | | Q7TNQ1 | Q7TNQ1 | 100.0 | 100.0 |
| 2799 | | Opened 1 AlphaFold model |
| 2800 | | > select add #8942 atoms, 957 bonds, 121 residues, 1 model selected |
| 2801 | | > view matrix models #8,1,0,0,149.9,0,1,0,6.7504,0,0,1,-12.091> view matrix |
| 2802 | | > models #8,1,0,0,287.33,0,1,0,321.66,0,0,1,265.43> view matrix models |
| 2803 | | > #8,1,0,0,264.24,0,1,0,366.5,0,0,1,283.32> view matrix models |
| 2804 | | > #8,1,0,0,229.5,0,1,0,386.19,0,0,1,269.64> view matrix models |
| 2805 | | > #8,1,0,0,303.82,0,1,0,441.41,0,0,1,243.2> close #8Fetching compressed Q5XJY5 |
| 2806 | | > UniProt info from https://www.uniprot.org/uniprot/Q5XJY5.xml |
| 2807 | | > alphafold match Q5XJY5Fetching compressed AlphaFold Q5XJY5 from |
| 2808 | | > https://alphafold.ebi.ac.uk/files/AF-Q5XJY5-F1-model_v4.cif |
| 2809 | | 1 AlphaFold model found using UniProt identifier: Q5XJY5 (UniProt Q5XJY5) |
| 2810 | | | Sequence Similarity |
| 2811 | | --- |
| 2812 | | AlphaFold Model| Query Sequence| Identity %| Coverage % |
| 2813 | | Q5XJY5 | Q5XJY5 | 100.0 | 100.0 |
| 2814 | | Opened 1 AlphaFold model |
| 2815 | | > select add #84014 atoms, 4083 bonds, 511 residues, 1 model selected |
| 2816 | | > view matrix models #8,1,0,0,194.37,0,1,0,278.17,0,0,1,-165.99> view matrix |
| 2817 | | > models #8,1,0,0,330.77,0,1,0,303.4,0,0,1,317.75> view matrix models |
| 2818 | | > #8,1,0,0,289.13,0,1,0,381.85,0,0,1,374.49> view matrix models |
| 2819 | | > #8,1,0,0,226.68,0,1,0,354.27,0,0,1,374.38> view matrix models |
| 2820 | | > #8,1,0,0,182.68,0,1,0,331.4,0,0,1,377.96> view matrix models |
| 2821 | | > #8,1,0,0,250.96,0,1,0,357.53,0,0,1,329.55> hide #7 models> hide #6 models> |
| 2822 | | > hide #5 models> hide #4 models> hide #3 models> view matrix models |
| 2823 | | > #8,1,0,0,251.35,0,1,0,322.13,0,0,1,332.41> view matrix models |
| 2824 | | > #8,1,0,0,237.89,0,1,0,289.39,0,0,1,319.92> ui mousemode right "rotate |
| 2825 | | > selected models"> view matrix models |
| 2826 | | > #8,0.12745,0.73772,-0.66296,217.8,0.41884,0.56586,0.7102,307.24,0.89907,-0.36819,-0.23686,300.45> |
| 2827 | | > view matrix models |
| 2828 | | > #8,-0.16135,0.94424,0.287,235.04,-0.14136,-0.30993,0.94019,311.58,0.97672,0.11112,0.18349,308> |
| 2829 | | > view matrix models |
| 2830 | | > #8,0.54827,0.71745,0.42972,242.23,-0.64377,0.034086,0.76446,304.44,0.53381,-0.69577,0.48056,314.11> |
| 2831 | | > view matrix models |
| 2832 | | > #8,0.43688,0.68885,0.57847,244.77,-0.85392,0.11543,0.50745,297.9,0.28278,-0.71566,0.63865,316.1> |
| 2833 | | > view matrix models |
| 2834 | | > #8,0.23358,0.7626,0.60322,244.02,-0.94894,0.043513,0.31244,293.66,0.21202,-0.6454,0.73383,317.47> |
| 2835 | | > view matrix models |
| 2836 | | > #8,0.18456,0.89465,0.40686,239.39,-0.88428,-0.029508,0.46602,297.32,0.42893,-0.44579,0.78568,319.05> |
| 2837 | | > view matrix models |
| 2838 | | > #8,0.075697,0.89202,0.44562,239.63,-0.87716,-0.15296,0.45519,297.5,0.4742,-0.42533,0.77086,318.92> |
| 2839 | | > ui mousemode right "translate selected models"> view matrix models |
| 2840 | | > #8,0.075697,0.89202,0.44562,257.62,-0.87716,-0.15296,0.45519,309.44,0.4742,-0.42533,0.77086,334.32> |
| 2841 | | > view matrix models |
| 2842 | | > #8,0.075697,0.89202,0.44562,253.99,-0.87716,-0.15296,0.45519,305.59,0.4742,-0.42533,0.77086,332.93> |
| 2843 | | > ui mousemode right "rotate selected models"> view matrix models |
| 2844 | | > #8,0.10729,0.92588,0.36226,252.36,-0.91105,-0.054334,0.4087,304.18,0.39809,-0.37388,0.8377,333.75> |
| 2845 | | > ui mousemode right "translate selected models"> view matrix models |
| 2846 | | > #8,0.10729,0.92588,0.36226,254.59,-0.91105,-0.054334,0.4087,304.29,0.39809,-0.37388,0.8377,332.06> |
| 2847 | | > hide #!1 models> select clear> select #8/A:38 atoms, 7 bonds, 1 residue, 1 |
| 2848 | | > model selected |
| 2849 | | > select clear> select #8/A:38 atoms, 7 bonds, 1 residue, 1 model selected |
| 2850 | | > select add #8/A:12813 atoms, 11 bonds, 2 residues, 1 model selected |
| 2851 | | > select up117 atoms, 116 bonds, 16 residues, 1 model selected |
| 2852 | | > select up4014 atoms, 4083 bonds, 511 residues, 1 model selected |
| 2853 | | > select up31453 atoms, 32073 bonds, 3964 residues, 10 models selected |
| 2854 | | > select up31453 atoms, 32073 bonds, 3964 residues, 10 models selected |
| 2855 | | > select down4014 atoms, 4083 bonds, 511 residues, 1 model selected |
| 2856 | | > select down117 atoms, 116 bonds, 16 residues, 1 model selected |
| 2857 | | > select clear> select #8/A:48 atoms, 7 bonds, 1 residue, 1 model selected |
| 2858 | | > select #8:1-1291037 atoms, 1053 bonds, 129 residues, 1 model selected |
| 2859 | | > fitmap sel inMap #1Fit molecule AlphaFold Q5XJY5 (#8) to map postprocess.mrc |
| 2860 | | > (#1) using 1037 atoms |
| 2861 | | average map value = 0.01008, steps = 68 |
| 2862 | | shifted from previous position = 1.88 |
| 2863 | | rotated from previous position = 9.03 degrees |
| 2864 | | atoms outside contour = 617, contour level = 0.011955 |
| 2865 | | |
| 2866 | | Position of AlphaFold Q5XJY5 (#8) relative to postprocess.mrc (#1) |
| 2867 | | coordinates: |
| 2868 | | Matrix rotation and translation |
| 2869 | | 0.20025661 0.94967606 0.24085819 253.94050178 |
| 2870 | | -0.87761546 0.06459277 0.47499355 301.50451746 |
| 2871 | | 0.43553230 -0.30650147 0.84638553 331.26549457 |
| 2872 | | Axis -0.39135326 -0.09748796 -0.91506214 |
| 2873 | | Axis point 205.98623285 84.05170203 0.00000000 |
| 2874 | | Rotation angle (degrees) 86.81170934 |
| 2875 | | Shift along axis -431.90201573 |
| 2876 | | |
| 2877 | | > show #!1 models> select clear> show #7 models> show #6 models> show #5 |
| 2878 | | > models> show #4 models> show #3 modelsFetching compressed Q9QXK3 UniProt |
| 2879 | | > info from https://www.uniprot.org/uniprot/Q9QXK3.xml |
| 2880 | | > alphafold match Q9QXK3Fetching compressed AlphaFold Q9QXK3 from |
| 2881 | | > https://alphafold.ebi.ac.uk/files/AF-Q9QXK3-F1-model_v4.cif |
| 2882 | | 1 AlphaFold model found using UniProt identifier: Q9QXK3 (UniProt Q9QXK3) |
| 2883 | | | Sequence Similarity |
| 2884 | | --- |
| 2885 | | AlphaFold Model| Query Sequence| Identity %| Coverage % |
| 2886 | | Q9QXK3 | Q9QXK3 | 100.0 | 100.0 |
| 2887 | | Opened 1 AlphaFold model |
| 2888 | | > select add #96840 atoms, 6965 bonds, 871 residues, 1 model selected |
| 2889 | | > view matrix models #9,1,0,0,85.449,0,1,0,271.26,0,0,1,-4.2898> view matrix |
| 2890 | | > models #9,1,0,0,363.93,0,1,0,413.14,0,0,1,278.06> view matrix models |
| 2891 | | > #9,1,0,0,279.54,0,1,0,339.8,0,0,1,433.41> view matrix models |
| 2892 | | > #9,1,0,0,244.3,0,1,0,387.71,0,0,1,324.69> view matrix models |
| 2893 | | > #9,1,0,0,266.45,0,1,0,316.24,0,0,1,284.51> view matrix models |
| 2894 | | > #9,1,0,0,300.16,0,1,0,316.61,0,0,1,341.57> view matrix models |
| 2895 | | > #9,1,0,0,292.4,0,1,0,403.59,0,0,1,378.62> ui mousemode right "rotate |
| 2896 | | > selected models"> view matrix models |
| 2897 | | > #9,0.99183,0.09982,0.079482,292.2,0.0093959,-0.67835,0.73468,422.34,0.12725,-0.72793,-0.67374,371.99> |
| 2898 | | > view matrix models |
| 2899 | | > #9,0.25596,-0.95097,-0.17363,299.29,-0.10833,-0.2067,0.97239,420.44,-0.9606,-0.23008,-0.15592,372.71> |
| 2900 | | > view matrix models |
| 2901 | | > #9,0.79745,0.12821,-0.58961,287.21,0.57389,0.14065,0.80676,415.91,0.18636,-0.98172,0.038581,379.2> |
| 2902 | | > view matrix models |
| 2903 | | > #9,0.75567,-0.21736,-0.61783,289.78,0.23302,-0.79238,0.56377,421.81,-0.6121,-0.56999,-0.54813,372.25> |
| 2904 | | > view matrix models |
| 2905 | | > #9,0.11583,0.2738,-0.95479,283.91,0.71343,-0.69175,-0.11183,415.66,-0.69109,-0.66822,-0.27546,375.1> |
| 2906 | | > view matrix models |
| 2907 | | > #9,-0.072123,0.35632,-0.93158,283.57,0.73527,-0.6121,-0.29105,413.69,-0.67393,-0.70595,-0.21784,375.81> |
| 2908 | | > view matrix models |
| 2909 | | > #9,-0.10636,0.34632,-0.93207,283.67,0.68464,-0.65428,-0.32123,413.84,-0.72108,-0.67229,-0.16751,375.95> |
| 2910 | | > ui mousemode right "rotate selected models"> ui mousemode right "translate |
| 2911 | | > selected models"> view matrix models |
| 2912 | | > #9,-0.10636,0.34632,-0.93207,327.8,0.68464,-0.65428,-0.32123,352.03,-0.72108,-0.67229,-0.16751,391.1> |
| 2913 | | > view matrix models |
| 2914 | | > #9,-0.10636,0.34632,-0.93207,325.86,0.68464,-0.65428,-0.32123,339.75,-0.72108,-0.67229,-0.16751,369.72> |
| 2915 | | > view matrix models |
| 2916 | | > #9,-0.10636,0.34632,-0.93207,324.89,0.68464,-0.65428,-0.32123,334.42,-0.72108,-0.67229,-0.16751,360.64> |
| 2917 | | > fitmap sel inMap #1Fit molecule AlphaFold Q9QXK3 (#9) to map postprocess.mrc |
| 2918 | | > (#1) using 6840 atoms |
| 2919 | | average map value = 0.006072, steps = 140 |
| 2920 | | shifted from previous position = 19.4 |
| 2921 | | rotated from previous position = 26.9 degrees |
| 2922 | | atoms outside contour = 5783, contour level = 0.011955 |
| 2923 | | |
| 2924 | | Position of AlphaFold Q9QXK3 (#9) relative to postprocess.mrc (#1) |
| 2925 | | coordinates: |
| 2926 | | Matrix rotation and translation |
| 2927 | | 0.29421585 0.14209339 -0.94511719 316.26408008 |
| 2928 | | 0.72293810 -0.67990666 0.12283091 351.53253187 |
| 2929 | | -0.62513801 -0.71940003 -0.30276405 352.91229436 |
| 2930 | | Axis -0.78568500 -0.29849632 0.54184779 |
| 2931 | | Axis point 0.00000000 197.21498840 229.44931408 |
| 2932 | | Rotation angle (degrees) 147.58925529 |
| 2933 | | Shift along axis -162.19036505 |
| 2934 | | |
| 2935 | | > view matrix models |
| 2936 | | > #9,0.29422,0.14209,-0.94512,323.31,0.72294,-0.67991,0.12283,355.25,-0.62514,-0.7194,-0.30276,351.21> |
| 2937 | | > fitmap sel inMap #1Fit molecule AlphaFold Q9QXK3 (#9) to map postprocess.mrc |
| 2938 | | > (#1) using 6840 atoms |
| 2939 | | average map value = 0.006265, steps = 92 |
| 2940 | | shifted from previous position = 6.63 |
| 2941 | | rotated from previous position = 16.6 degrees |
| 2942 | | atoms outside contour = 5675, contour level = 0.011955 |
| 2943 | | |
| 2944 | | Position of AlphaFold Q9QXK3 (#9) relative to postprocess.mrc (#1) |
| 2945 | | coordinates: |
| 2946 | | Matrix rotation and translation |
| 2947 | | 0.51174673 -0.00550976 -0.85911869 319.63636780 |
| 2948 | | 0.66090437 -0.63639088 0.39775879 360.97301425 |
| 2949 | | -0.54892686 -0.77134706 -0.32202953 352.42782780 |
| 2950 | | Axis -0.84657041 -0.22461544 0.48256237 |
| 2951 | | Axis point 0.00000000 242.22195078 191.54417221 |
| 2952 | | Rotation angle (degrees) 136.33066765 |
| 2953 | | Shift along axis -181.60639881 |
| 2954 | | |
| 2955 | | > select clear> hide #3 models> hide #4 models> hide #5 models> hide #6 |
| 2956 | | > models> hide #7 models> hide #8 models> hide #!1 models> show #!1 models> |
| 2957 | | > hide #!1 modelsDrag select of 1 residues |
| 2958 | | > select clearDrag select of 211 residues |
| 2959 | | > show #8 models> hide #8 models> show #7 models> show #6 models> show #5 |
| 2960 | | > models> show #4 models> hide #4 models> hide #6 models> hide #7 models> hide |
| 2961 | | > #5 models> show #!1 models> ui tool show "Fit in Map"> fitmap sel inMap #1 |
| 2962 | | > moveWholeMolecules falseFit molecule AlphaFold Q9QXK3 (#9) to map |
| 2963 | | > postprocess.mrc (#1) using 1678 atoms |
| 2964 | | average map value = 0.009038, steps = 56 |
| 2965 | | shifted from previous position = 1.03 |
| 2966 | | rotated from previous position = 11.8 degrees |
| 2967 | | atoms outside contour = 1111, contour level = 0.011955 |
| 2968 | | |
| 2969 | | > view matrix models |
| 2970 | | > #9,0.51175,-0.0055098,-0.85912,326.87,0.6609,-0.63639,0.39776,356.29,-0.54893,-0.77135,-0.32203,353.26> |
| 2971 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QXK3 |
| 2972 | | > (#9) to map postprocess.mrc (#1) using 1678 atoms |
| 2973 | | average map value = 0.01147, steps = 56 |
| 2974 | | shifted from previous position = 4.35 |
| 2975 | | rotated from previous position = 11.3 degrees |
| 2976 | | atoms outside contour = 900, contour level = 0.011955 |
| 2977 | | |
| 2978 | | > hide #!1 models> select #9/A:2068 atoms, 7 bonds, 1 residue, 1 model |
| 2979 | | > selected |
| 2980 | | > select #9:206-316868 atoms, 883 bonds, 111 residues, 1 model selected |
| 2981 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QXK3 |
| 2982 | | > (#9) to map postprocess.mrc (#1) using 868 atoms |
| 2983 | | average map value = 0.01128, steps = 68 |
| 2984 | | shifted from previous position = 7.48 |
| 2985 | | rotated from previous position = 28.9 degrees |
| 2986 | | atoms outside contour = 497, contour level = 0.011955 |
| 2987 | | |
| 2988 | | > show #!1 models> hide #!1 models> select #9:300-5001551 atoms, 1575 bonds, |
| 2989 | | > 201 residues, 1 model selected |
| 2990 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QXK3 |
| 2991 | | > (#9) to map postprocess.mrc (#1) using 1551 atoms |
| 2992 | | average map value = 0.0102, steps = 100 |
| 2993 | | shifted from previous position = 11.7 |
| 2994 | | rotated from previous position = 27.1 degrees |
| 2995 | | atoms outside contour = 951, contour level = 0.011955 |
| 2996 | | |
| 2997 | | > show #!1 models> select #9:300-9004474 atoms, 4559 bonds, 572 residues, 1 |
| 2998 | | > model selected |
| 2999 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QXK3 |
| 3000 | | > (#9) to map postprocess.mrc (#1) using 4474 atoms |
| 3001 | | average map value = 0.007096, steps = 144 |
| 3002 | | shifted from previous position = 10.5 |
| 3003 | | rotated from previous position = 25.4 degrees |
| 3004 | | atoms outside contour = 3695, contour level = 0.011955 |
| 3005 | | |
| 3006 | | > select #9:300-7003151 atoms, 3212 bonds, 401 residues, 1 model selected |
| 3007 | | > select #9:300-6002347 atoms, 2387 bonds, 301 residues, 1 model selected |
| 3008 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QXK3 |
| 3009 | | > (#9) to map postprocess.mrc (#1) using 2347 atoms |
| 3010 | | average map value = 0.007995, steps = 64 |
| 3011 | | shifted from previous position = 1.03 |
| 3012 | | rotated from previous position = 5.58 degrees |
| 3013 | | atoms outside contour = 1793, contour level = 0.011955 |
| 3014 | | |
| 3015 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QXK3 |
| 3016 | | > (#9) to map postprocess.mrc (#1) using 2347 atoms |
| 3017 | | average map value = 0.007994, steps = 36 |
| 3018 | | shifted from previous position = 0.0389 |
| 3019 | | rotated from previous position = 0.0318 degrees |
| 3020 | | atoms outside contour = 1790, contour level = 0.011955 |
| 3021 | | |
| 3022 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QXK3 |
| 3023 | | > (#9) to map postprocess.mrc (#1) using 2347 atoms |
| 3024 | | average map value = 0.007994, steps = 44 |
| 3025 | | shifted from previous position = 0.00739 |
| 3026 | | rotated from previous position = 0.0307 degrees |
| 3027 | | atoms outside contour = 1789, contour level = 0.011955 |
| 3028 | | |
| 3029 | | > select #9:500-600801 atoms, 816 bonds, 101 residues, 1 model selected |
| 3030 | | > select #9:350-6001971 atoms, 2007 bonds, 251 residues, 1 model selected |
| 3031 | | > select #9:350-5001175 atoms, 1195 bonds, 151 residues, 1 model selected |
| 3032 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QXK3 |
| 3033 | | > (#9) to map postprocess.mrc (#1) using 1175 atoms |
| 3034 | | average map value = 0.01025, steps = 60 |
| 3035 | | shifted from previous position = 3.3 |
| 3036 | | rotated from previous position = 26.6 degrees |
| 3037 | | atoms outside contour = 741, contour level = 0.011955 |
| 3038 | | |
| 3039 | | > select #9:400-5501192 atoms, 1211 bonds, 151 residues, 1 model selected |
| 3040 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QXK3 |
| 3041 | | > (#9) to map postprocess.mrc (#1) using 1192 atoms |
| 3042 | | average map value = 0.0094, steps = 68 |
| 3043 | | shifted from previous position = 1.14 |
| 3044 | | rotated from previous position = 3.49 degrees |
| 3045 | | atoms outside contour = 837, contour level = 0.011955 |
| 3046 | | |
| 3047 | | > select #9:400-100Nothing selected |
| 3048 | | > select #9:400-10003708 atoms, 3783 bonds, 472 residues, 1 model selected |
| 3049 | | > view matrix models |
| 3050 | | > #9,0.51175,-0.0055098,-0.85912,308.44,0.6609,-0.63639,0.39776,348.7,-0.54893,-0.77135,-0.32203,360.28> |
| 3051 | | > view matrix models |
| 3052 | | > #9,0.51175,-0.0055098,-0.85912,297.82,0.6609,-0.63639,0.39776,381.54,-0.54893,-0.77135,-0.32203,377.2> |
| 3053 | | > ui tool show AlphaFold> close #9Fetching compressed Q9Qxk3 UniProt info from |
| 3054 | | > https://www.uniprot.org/uniprot/Q9Qxk3.xml |
| 3055 | | > alphafold match Q9Qxk31 AlphaFold model found using UniProt identifier: |
| 3056 | | > Q9Qxk3 (UniProt Q9Qxk3) |
| 3057 | | | Sequence Similarity |
| 3058 | | --- |
| 3059 | | AlphaFold Model| Query Sequence| Identity %| Coverage % |
| 3060 | | Q9Qxk3 | Q9Qxk3 | 100.0 | 100.0 |
| 3061 | | Opened 1 AlphaFold model |
| 3062 | | > select add #96840 atoms, 6965 bonds, 871 residues, 1 model selected |
| 3063 | | > view matrix models #9,1,0,0,466.25,0,1,0,157.83,0,0,1,256.46> view matrix |
| 3064 | | > models #9,1,0,0,305.98,0,1,0,365.44,0,0,1,305.5> view matrix models |
| 3065 | | > #9,1,0,0,341.52,0,1,0,373.45,0,0,1,300.44> ui mousemode right "rotate |
| 3066 | | > selected models"> view matrix models |
| 3067 | | > #9,0.81361,-0.12237,-0.56838,338.46,0.5568,-0.1174,0.82231,387.95,-0.16736,-0.98552,-0.027381,300.86> |
| 3068 | | > view matrix models |
| 3069 | | > #9,0.82945,-0.12912,-0.54345,338.68,0.5312,-0.11855,0.83891,388.1,-0.17275,-0.98452,-0.029744,300.84> |
| 3070 | | > view matrix models |
| 3071 | | > #9,0.54585,0.14577,-0.82511,334.65,0.61472,-0.73883,0.27614,388.82,-0.56936,-0.65794,-0.49289,295.15> |
| 3072 | | > view matrix models |
| 3073 | | > #9,0.38754,0.030891,-0.92133,334.98,0.55325,-0.80723,0.20565,388.9,-0.73738,-0.58943,-0.32992,295.94> |
| 3074 | | > ui mousemode right "translate selected models"> view matrix models |
| 3075 | | > #9,0.38754,0.030891,-0.92133,322.24,0.55325,-0.80723,0.20565,374.45,-0.73738,-0.58943,-0.32992,358.47> |
| 3076 | | > view matrix models |
| 3077 | | > #9,0.38754,0.030891,-0.92133,327.16,0.55325,-0.80723,0.20565,360.18,-0.73738,-0.58943,-0.32992,352.33> |
| 3078 | | > view matrix models |
| 3079 | | > #9,0.38754,0.030891,-0.92133,324.22,0.55325,-0.80723,0.20565,360.68,-0.73738,-0.58943,-0.32992,358.31> |
| 3080 | | > view matrix models |
| 3081 | | > #9,0.38754,0.030891,-0.92133,322.41,0.55325,-0.80723,0.20565,353.33,-0.73738,-0.58943,-0.32992,357.52> |
| 3082 | | > ui mousemode right "translate selected models"> ui mousemode right "rotate |
| 3083 | | > selected models"> view matrix models |
| 3084 | | > #9,0.34389,-0.062917,-0.9369,323.07,0.6427,-0.71165,0.2837,353.07,-0.6846,-0.69971,-0.2043,359.27> |
| 3085 | | > ui mousemode right "translate selected models"> view matrix models |
| 3086 | | > #9,0.34389,-0.062917,-0.9369,328.81,0.6427,-0.71165,0.2837,356.31,-0.6846,-0.69971,-0.2043,360.58> |
| 3087 | | > view matrix models |
| 3088 | | > #9,0.34389,-0.062917,-0.9369,328.8,0.6427,-0.71165,0.2837,351.24,-0.6846,-0.69971,-0.2043,359.5> |
| 3089 | | > view matrix models |
| 3090 | | > #9,0.34389,-0.062917,-0.9369,331.26,0.6427,-0.71165,0.2837,360.08,-0.6846,-0.69971,-0.2043,354.24> |
| 3091 | | > select up38293 atoms, 39038 bonds, 4835 residues, 11 models selected |
| 3092 | | > select down6840 atoms, 6965 bonds, 871 residues, 1 model selected |
| 3093 | | > fitmap sel inMap #1Fit molecule AlphaFold Q9Qxk3 (#9) to map postprocess.mrc |
| 3094 | | > (#1) using 6840 atoms |
| 3095 | | average map value = 0.006977, steps = 140 |
| 3096 | | shifted from previous position = 5.07 |
| 3097 | | rotated from previous position = 17 degrees |
| 3098 | | atoms outside contour = 5336, contour level = 0.011955 |
| 3099 | | |
| 3100 | | Position of AlphaFold Q9Qxk3 (#9) relative to postprocess.mrc (#1) |
| 3101 | | coordinates: |
| 3102 | | Matrix rotation and translation |
| 3103 | | 0.55353562 -0.14351463 -0.82036691 327.32551199 |
| 3104 | | 0.43570473 -0.78957990 0.43211684 362.60212095 |
| 3105 | | -0.70976031 -0.59662980 -0.37453060 353.73929912 |
| 3106 | | Axis -0.86757749 -0.09327835 0.48847564 |
| 3107 | | Axis point 0.00000000 244.06438349 202.94719963 |
| 3108 | | Rotation angle (degrees) 143.63802429 |
| 3109 | | Shift along axis -145.01014236 |
| 3110 | | |
| 3111 | | > hide #9 models> show #9 models> hide #9 models> show #9 models> hide #!1 |
| 3112 | | > models> select #9:250-10004861 atoms, 4956 bonds, 622 residues, 1 model |
| 3113 | | > selected |
| 3114 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9Qxk3 |
| 3115 | | > (#9) to map postprocess.mrc (#1) using 4861 atoms |
| 3116 | | average map value = 0.006192, steps = 108 |
| 3117 | | shifted from previous position = 9.94 |
| 3118 | | rotated from previous position = 28.1 degrees |
| 3119 | | atoms outside contour = 4157, contour level = 0.011955 |
| 3120 | | |
| 3121 | | > show #!1 models> select #9:300-6002347 atoms, 2387 bonds, 301 residues, 1 |
| 3122 | | > model selected |
| 3123 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9Qxk3 |
| 3124 | | > (#9) to map postprocess.mrc (#1) using 2347 atoms |
| 3125 | | average map value = 0.0079, steps = 100 |
| 3126 | | shifted from previous position = 6.85 |
| 3127 | | rotated from previous position = 13.6 degrees |
| 3128 | | atoms outside contour = 1821, contour level = 0.011955 |
| 3129 | | |
| 3130 | | > select #9:100-3001571 atoms, 1595 bonds, 201 residues, 1 model selected |
| 3131 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9Qxk3 |
| 3132 | | > (#9) to map postprocess.mrc (#1) using 1571 atoms |
| 3133 | | average map value = 0.0114, steps = 104 |
| 3134 | | shifted from previous position = 1.54 |
| 3135 | | rotated from previous position = 6.83 degrees |
| 3136 | | atoms outside contour = 841, contour level = 0.011955 |
| 3137 | | |
| 3138 | | > select #9:300-400777 atoms, 787 bonds, 101 residues, 1 model selected |
| 3139 | | > select #9:250-4001164 atoms, 1184 bonds, 151 residues, 1 model selected |
| 3140 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9Qxk3 |
| 3141 | | > (#9) to map postprocess.mrc (#1) using 1164 atoms |
| 3142 | | average map value = 0.01073, steps = 72 |
| 3143 | | shifted from previous position = 3.06 |
| 3144 | | rotated from previous position = 30.4 degrees |
| 3145 | | atoms outside contour = 648, contour level = 0.011955 |
| 3146 | | |
| 3147 | | > select #9:400-100Nothing selected |
| 3148 | | > select #9:400-10003708 atoms, 3783 bonds, 472 residues, 1 model selected |
| 3149 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9Qxk3 |
| 3150 | | > (#9) to map postprocess.mrc (#1) using 3708 atoms |
| 3151 | | average map value = 0.006659, steps = 104 |
| 3152 | | shifted from previous position = 11.1 |
| 3153 | | rotated from previous position = 11.8 degrees |
| 3154 | | atoms outside contour = 3193, contour level = 0.011955 |
| 3155 | | |
| 3156 | | > undo> select #9:400-10003708 atoms, 3783 bonds, 472 residues, 1 model |
| 3157 | | > selected |
| 3158 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9Qxk3 |
| 3159 | | > (#9) to map postprocess.mrc (#1) using 3708 atoms |
| 3160 | | average map value = 0.006659, steps = 44 |
| 3161 | | shifted from previous position = 0.0502 |
| 3162 | | rotated from previous position = 0.0896 degrees |
| 3163 | | atoms outside contour = 3187, contour level = 0.011955 |
| 3164 | | |
| 3165 | | > hide #9 models> close #9> ui tool show AlphaFold> alphafold match Q9QXK31 |
| 3166 | | > AlphaFold model found using UniProt identifier: Q9QXK3 (UniProt Q9QXK3) |
| 3167 | | | Sequence Similarity |
| 3168 | | --- |
| 3169 | | AlphaFold Model| Query Sequence| Identity %| Coverage % |
| 3170 | | Q9QXK3 | Q9QXK3 | 100.0 | 100.0 |
| 3171 | | Opened 1 AlphaFold model |
| 3172 | | > select add #96840 atoms, 6965 bonds, 871 residues, 1 model selected |
| 3173 | | > view matrix models #9,1,0,0,346.28,0,1,0,94.03,0,0,1,328.47> view matrix |
| 3174 | | > models #9,1,0,0,344.81,0,1,0,325.02,0,0,1,180.28> view matrix models |
| 3175 | | > #9,1,0,0,329.7,0,1,0,280.23,0,0,1,355.77> view matrix models |
| 3176 | | > #9,1,0,0,329.94,0,1,0,338.64,0,0,1,391.21> view matrix models |
| 3177 | | > #9,1,0,0,333.12,0,1,0,343.71,0,0,1,382.63> ui mousemode right "rotate |
| 3178 | | > selected models"> view matrix models |
| 3179 | | > #9,0.98522,-0.020408,-0.17006,332.04,0.023622,-0.9672,0.25292,361.21,-0.16964,-0.2532,-0.95242,370.41> |
| 3180 | | > view matrix models |
| 3181 | | > #9,-0.16807,0.28223,-0.94451,324.86,0.431,-0.84067,-0.3279,355.6,-0.88656,-0.46219,0.019648,379.81> |
| 3182 | | > view matrix models |
| 3183 | | > #9,0.037112,0.71778,-0.69528,323.07,0.99928,-0.020977,0.031682,351.27,0.0081554,-0.69595,-0.71804,375.52> |
| 3184 | | > view matrix models |
| 3185 | | > #9,0.10857,0.6296,-0.76929,323.17,0.70385,-0.59517,-0.38777,352.99,-0.702,-0.49937,-0.50777,376.07> |
| 3186 | | > view matrix models |
| 3187 | | > #9,-0.10772,0.32765,-0.93864,324.49,0.68538,-0.65945,-0.30885,354.09,-0.72017,-0.67659,-0.15353,380.1> |
| 3188 | | > ui mousemode right "translate selected models"> view matrix models |
| 3189 | | > #9,-0.10772,0.32765,-0.93864,323.58,0.68538,-0.65945,-0.30885,357.08,-0.72017,-0.67659,-0.15353,353.13> |
| 3190 | | > view matrix models |
| 3191 | | > #9,-0.10772,0.32765,-0.93864,326.75,0.68538,-0.65945,-0.30885,348.33,-0.72017,-0.67659,-0.15353,353.08> |
| 3192 | | > ui mousemode right "rotate selected models"> view matrix models |
| 3193 | | > #9,0.46602,0.20275,-0.86123,327.86,0.56213,-0.81953,0.11124,352.79,-0.68325,-0.53597,-0.49589,349.41> |
| 3194 | | > view matrix models |
| 3195 | | > #9,0.54278,0.21877,-0.81088,328.04,0.69587,-0.65774,0.28835,352.7,-0.47027,-0.72078,-0.50924,350.61> |
| 3196 | | > view matrix models |
| 3197 | | > #9,0.45333,0.068879,-0.88868,328.73,0.65945,-0.69669,0.2824,353,-0.59968,-0.71406,-0.36126,351.75> |
| 3198 | | > view matrix models |
| 3199 | | > #9,0.40612,-0.099249,-0.90841,329.96,0.5666,-0.75258,0.33553,353.91,-0.71696,-0.65098,-0.2494,352.16> |
| 3200 | | > ui mousemode right "translate selected models"> view matrix models |
| 3201 | | > #9,0.40612,-0.099249,-0.90841,326.9,0.5666,-0.75258,0.33553,358.95,-0.71696,-0.65098,-0.2494,354.62> |
| 3202 | | > view matrix models |
| 3203 | | > #9,0.40612,-0.099249,-0.90841,327.34,0.5666,-0.75258,0.33553,355.75,-0.71696,-0.65098,-0.2494,353.62> |
| 3204 | | > ui mousemode right "rotate selected models"> view matrix models |
| 3205 | | > #9,0.45446,-0.074433,-0.88765,327.25,0.47841,-0.82019,0.31371,356.19,-0.75139,-0.56723,-0.33713,352.33> |
| 3206 | | > view matrix models |
| 3207 | | > #9,0.53338,-0.018393,-0.84568,327.05,0.3716,-0.89303,0.2538,356.42,-0.75988,-0.44962,-0.46949,350.43> |
| 3208 | | > ui mousemode right "translate selected models"> view matrix models |
| 3209 | | > #9,0.53338,-0.018393,-0.84568,321.88,0.3716,-0.89303,0.2538,362.63,-0.75988,-0.44962,-0.46949,353.85> |
| 3210 | | > view matrix models |
| 3211 | | > #9,0.53338,-0.018393,-0.84568,322.39,0.3716,-0.89303,0.2538,362.93,-0.75988,-0.44962,-0.46949,356.17> |
| 3212 | | > ui mousemode right "rotate selected models"> view matrix models |
| 3213 | | > #9,0.32662,-0.16027,-0.93147,323.06,0.4011,-0.86887,0.29015,362.98,-0.85583,-0.46838,-0.21951,358.24> |
| 3214 | | > view matrix models |
| 3215 | | > #9,0.3621,-0.28466,-0.88761,324.34,0.37433,-0.82767,0.41814,363.62,-0.85367,-0.48367,-0.19315,358.55> |
| 3216 | | > ui mousemode right "translate selected models"> view matrix models |
| 3217 | | > #9,0.3621,-0.28466,-0.88761,332.14,0.37433,-0.82767,0.41814,362.08,-0.85367,-0.48367,-0.19315,356.53> |
| 3218 | | > select up38293 atoms, 39038 bonds, 4835 residues, 11 models selected |
| 3219 | | > select down6840 atoms, 6965 bonds, 871 residues, 1 model selected |
| 3220 | | > fitmap sel inMap #1Fit molecule AlphaFold Q9QXK3 (#9) to map postprocess.mrc |
| 3221 | | > (#1) using 6840 atoms |
| 3222 | | average map value = 0.006977, steps = 116 |
| 3223 | | shifted from previous position = 5.47 |
| 3224 | | rotated from previous position = 14.8 degrees |
| 3225 | | atoms outside contour = 5340, contour level = 0.011955 |
| 3226 | | |
| 3227 | | Position of AlphaFold Q9QXK3 (#9) relative to postprocess.mrc (#1) |
| 3228 | | coordinates: |
| 3229 | | Matrix rotation and translation |
| 3230 | | 0.55315490 -0.14333117 -0.82065574 327.34325267 |
| 3231 | | 0.43605923 -0.78954698 0.43181930 362.59618814 |
| 3232 | | -0.70983943 -0.59671747 -0.37424090 353.73516973 |
| 3233 | | Axis -0.86745823 -0.09346143 0.48865241 |
| 3234 | | Axis point 0.00000000 244.03028062 202.99835241 |
| 3235 | | Rotation angle (degrees) 143.64083195 |
| 3236 | | Shift along axis -144.99181648 |
| 3237 | | |
| 3238 | | > select #9:200-10005268 atoms, 5369 bonds, 672 residues, 1 model selected |
| 3239 | | > fitmap sel inMap #1Fit molecule AlphaFold Q9QXK3 (#9) to map postprocess.mrc |
| 3240 | | > (#1) using 5268 atoms |
| 3241 | | average map value = 0.006427, steps = 464 |
| 3242 | | shifted from previous position = 15.5 |
| 3243 | | rotated from previous position = 56.2 degrees |
| 3244 | | atoms outside contour = 4358, contour level = 0.011955 |
| 3245 | | |
| 3246 | | Position of AlphaFold Q9QXK3 (#9) relative to postprocess.mrc (#1) |
| 3247 | | coordinates: |
| 3248 | | Matrix rotation and translation |
| 3249 | | 0.49099498 -0.67801596 -0.54700849 326.47928845 |
| 3250 | | 0.70423224 -0.06071019 0.70736923 354.78229623 |
| 3251 | | -0.51281661 -0.73253576 0.44767230 343.95295021 |
| 3252 | | Axis -0.72129666 -0.01712786 0.69241444 |
| 3253 | | Axis point 0.00000000 399.34894164 97.36011707 |
| 3254 | | Rotation angle (degrees) 93.49844516 |
| 3255 | | Shift along axis -3.40709031 |
| 3256 | | |
| 3257 | | > view matrix models |
| 3258 | | > #9,0.49099,-0.67802,-0.54701,329.21,0.70423,-0.06071,0.70737,351.41,-0.51282,-0.73254,0.44767,347.28> |
| 3259 | | > ui mousemode right "rotate selected models"> view matrix models |
| 3260 | | > #9,0.3712,-0.76337,-0.52866,330.12,0.89353,0.13876,0.42702,347.61,-0.25262,-0.63088,0.7336,348.37> |
| 3261 | | > view matrix models |
| 3262 | | > #9,0.26797,-0.16146,-0.9498,322.32,0.79568,-0.51877,0.31268,352.08,-0.54321,-0.83953,-0.010544,344.79> |
| 3263 | | > volume #1 level 0.0114> view matrix models |
| 3264 | | > #9,-0.068946,0.012243,-0.99755,320.86,0.95859,-0.27615,-0.069642,347.2,-0.27633,-0.96104,0.0073039,345.67> |
| 3265 | | > ui mousemode right "translate selected models"> view matrix models |
| 3266 | | > #9,-0.068946,0.012243,-0.99755,326.16,0.95859,-0.27615,-0.069642,383.95,-0.27633,-0.96104,0.0073039,364.3> |
| 3267 | | > ui mousemode right "rotate selected models"> view matrix models |
| 3268 | | > #9,0.29948,-0.17563,-0.9378,327.8,0.51056,-0.80084,0.31302,391.3,-0.806,-0.57255,-0.15017,360.48> |
| 3269 | | > ui mousemode right "translate selected models"> view matrix models |
| 3270 | | > #9,0.29948,-0.17563,-0.9378,331.34,0.51056,-0.80084,0.31302,373.09,-0.806,-0.57255,-0.15017,354.38> |
| 3271 | | > view matrix models |
| 3272 | | > #9,0.29948,-0.17563,-0.9378,331.12,0.51056,-0.80084,0.31302,368.68,-0.806,-0.57255,-0.15017,356.95> |
| 3273 | | > view matrix models |
| 3274 | | > #9,0.29948,-0.17563,-0.9378,331.87,0.51056,-0.80084,0.31302,368.76,-0.806,-0.57255,-0.15017,357.32> |
| 3275 | | > ui mousemode right "rotate selected models"> view matrix models |
| 3276 | | > #9,0.2389,-0.24832,-0.93875,332.49,0.49289,-0.80194,0.33757,368.96,-0.83665,-0.54335,-0.069191,357.71> |
| 3277 | | > ui mousemode right "translate selected models"> view matrix models |
| 3278 | | > #9,0.2389,-0.24832,-0.93875,331.35,0.49289,-0.80194,0.33757,368.84,-0.83665,-0.54335,-0.069191,354.45> |
| 3279 | | > ui mousemode right "rotate selected models"> view matrix models |
| 3280 | | > #9,0.25047,-0.32627,-0.91149,332.16,0.48051,-0.77545,0.40962,369.17,-0.84046,-0.54058,-0.037448,354.66> |
| 3281 | | > view matrix models |
| 3282 | | > #9,0.25692,-0.30288,-0.91775,331.92,0.48343,-0.782,0.39341,369.1,-0.83683,-0.54474,-0.054491,354.57> |
| 3283 | | > ui mousemode right "translate selected models"> view matrix models |
| 3284 | | > #9,0.25692,-0.30288,-0.91775,330.94,0.48343,-0.782,0.39341,368.9,-0.83683,-0.54474,-0.054491,354.54> |
| 3285 | | > view matrix models |
| 3286 | | > #9,0.25692,-0.30288,-0.91775,331.19,0.48343,-0.782,0.39341,367.85,-0.83683,-0.54474,-0.054491,351.42> |
| 3287 | | > view matrix models |
| 3288 | | > #9,0.25692,-0.30288,-0.91775,331.96,0.48343,-0.782,0.39341,365.6,-0.83683,-0.54474,-0.054491,354.12> |
| 3289 | | > view matrix models |
| 3290 | | > #9,0.25692,-0.30288,-0.91775,332.51,0.48343,-0.782,0.39341,364.42,-0.83683,-0.54474,-0.054491,353.64> |
| 3291 | | > view matrix models |
| 3292 | | > #9,0.25692,-0.30288,-0.91775,332.06,0.48343,-0.782,0.39341,365.52,-0.83683,-0.54474,-0.054491,351.69> |
| 3293 | | > view matrix models |
| 3294 | | > #9,0.25692,-0.30288,-0.91775,332.08,0.48343,-0.782,0.39341,365.35,-0.83683,-0.54474,-0.054491,350.74> |
| 3295 | | > view matrix models |
| 3296 | | > #9,0.25692,-0.30288,-0.91775,331.78,0.48343,-0.782,0.39341,364.85,-0.83683,-0.54474,-0.054491,350.82> |
| 3297 | | > show #8 models> hide #8 models> show #7 models> hide #7 models> show #6 |
| 3298 | | > models> hide #6 models> show #5 models> hide #5 models> show #5 models> hide |
| 3299 | | > #9 models> volume #1 level 0.007806> hide #5 models> show #9 models> show #5 |
| 3300 | | > models> volume #1 level 0.004348> volume #1 level 0.008913> hide #5 models> |
| 3301 | | > hide #!1 models> select clear> select #9:1-3542777 atoms, 2820 bonds, 354 |
| 3302 | | > residues, 1 model selected |
| 3303 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QXK3 |
| 3304 | | > (#9) to map postprocess.mrc (#1) using 2777 atoms |
| 3305 | | average map value = 0.01112, steps = 108 |
| 3306 | | shifted from previous position = 10.6 |
| 3307 | | rotated from previous position = 20.7 degrees |
| 3308 | | atoms outside contour = 1204, contour level = 0.0089126 |
| 3309 | | |
| 3310 | | > show #!1 models> show #3 models> hide #3 models> show #4 models> hide #4 |
| 3311 | | > models> show #5 models> select clear> show #8 models> show #7 models> show |
| 3312 | | > #6 models> show #3 models> show #!2 models> show #4 models> hide #!2 models> |
| 3313 | | > ui tool show AlphaFoldFetching compressed P61924 UniProt info from |
| 3314 | | > https://www.uniprot.org/uniprot/P61924.xml |
| 3315 | | > alphafold match P61924Fetching compressed AlphaFold P61924 from |
| 3316 | | > https://alphafold.ebi.ac.uk/files/AF-P61924-F1-model_v4.cif |
| 3317 | | 1 AlphaFold model found using UniProt identifier: P61924 (UniProt P61924) |
| 3318 | | | Sequence Similarity |
| 3319 | | --- |
| 3320 | | AlphaFold Model| Query Sequence| Identity %| Coverage % |
| 3321 | | P61924 | P61924 | 100.0 | 100.0 |
| 3322 | | Opened 1 AlphaFold model |
| 3323 | | > select add #101420 atoms, 1441 bonds, 177 residues, 1 model selected |
| 3324 | | > view matrix models #10,1,0,0,-76.273,0,1,0,57.541,0,0,1,547.9> view matrix |
| 3325 | | > models #10,1,0,0,345.73,0,1,0,306.47,0,0,1,357.61> view matrix models |
| 3326 | | > #10,1,0,0,297.5,0,1,0,315.44,0,0,1,368> view matrix models |
| 3327 | | > #10,1,0,0,303.89,0,1,0,298.59,0,0,1,364.43> view matrix models |
| 3328 | | > #10,1,0,0,312.28,0,1,0,288.62,0,0,1,366.79> view matrix models |
| 3329 | | > #10,1,0,0,342,0,1,0,324.37,0,0,1,361.18> view matrix models |
| 3330 | | > #10,1,0,0,349.14,0,1,0,327.22,0,0,1,345.56> volume #1 level 0.01209> hide #6 |
| 3331 | | > models> hide #7 models> hide #8 models> hide #9 models> hide #10 models> |
| 3332 | | > hide #4 models> hide #5 models> hide #3 models> show #10 models> ui |
| 3333 | | > mousemode right "rotate selected models"> view matrix models |
| 3334 | | > #10,0.32391,0.15708,-0.93296,340.76,-0.6159,0.78355,-0.081909,322.55,0.71816,0.60114,0.35055,348.14> |
| 3335 | | > view matrix models |
| 3336 | | > #10,0.45089,0.75045,-0.48323,347.69,0.79024,-0.083917,0.60702,328.71,0.41499,-0.65557,-0.63088,333.11> |
| 3337 | | > view matrix models |
| 3338 | | > #10,0.2643,0.93034,-0.2542,349.33,0.95688,-0.28589,-0.051414,324.04,-0.1205,-0.22965,-0.96578,330.84> |
| 3339 | | > view matrix models |
| 3340 | | > #10,0.53133,0.79911,-0.28126,349.66,0.83163,-0.55529,-0.0066568,322.2,-0.1615,-0.23036,-0.95961,330.68> |
| 3341 | | > view matrix models |
| 3342 | | > #10,0.44282,0.88902,0.11645,352.36,0.83457,-0.45615,0.30888,324.84,0.32772,-0.039596,-0.94394,334.18> |
| 3343 | | > view matrix models |
| 3344 | | > #10,0.35339,0.9199,0.16998,352.46,0.91374,-0.37837,0.14805,324.61,0.20051,0.103,-0.97426,334.2> |
| 3345 | | > ui mousemode right "move picked models"> ui mousemode right "translate |
| 3346 | | > selected models"> view matrix models |
| 3347 | | > #10,0.35339,0.9199,0.16998,339.75,0.91374,-0.37837,0.14805,350.37,0.20051,0.103,-0.97426,343.01> |
| 3348 | | > view matrix models |
| 3349 | | > #10,0.35339,0.9199,0.16998,335.09,0.91374,-0.37837,0.14805,353.64,0.20051,0.103,-0.97426,335.73> |
| 3350 | | > view matrix models |
| 3351 | | > #10,0.35339,0.9199,0.16998,338.46,0.91374,-0.37837,0.14805,354.76,0.20051,0.103,-0.97426,335.46> |
| 3352 | | > ui mousemode right "translate selected models"> ui mousemode right "rotate |
| 3353 | | > selected models"> view matrix models |
| 3354 | | > #10,0.34886,0.90839,0.23049,338.77,0.90686,-0.38926,0.16153,354.75,0.23645,0.15267,-0.95957,336.01> |
| 3355 | | > view matrix models |
| 3356 | | > #10,0.31175,0.90646,0.28484,338.94,0.91088,-0.37042,0.18188,355.01,0.27038,0.20276,-0.94116,336.58> |
| 3357 | | > fitmap sel inMap #1Fit molecule AlphaFold P61924 (#10) to map |
| 3358 | | > postprocess.mrc (#1) using 1420 atoms |
| 3359 | | average map value = 0.007729, steps = 132 |
| 3360 | | shifted from previous position = 13.2 |
| 3361 | | rotated from previous position = 32.1 degrees |
| 3362 | | atoms outside contour = 1082, contour level = 0.012094 |
| 3363 | | |
| 3364 | | Position of AlphaFold P61924 (#10) relative to postprocess.mrc (#1) |
| 3365 | | coordinates: |
| 3366 | | Matrix rotation and translation |
| 3367 | | 0.16003408 0.76875563 0.61919615 342.73825944 |
| 3368 | | 0.70217047 -0.52954063 0.47596571 350.81279439 |
| 3369 | | 0.69379084 0.35861052 -0.62454205 326.83209386 |
| 3370 | | Axis -0.76117753 -0.48382861 -0.43187804 |
| 3371 | | Axis point 0.00000000 68.50464302 64.30358461 |
| 3372 | | Rotation angle (degrees) 175.57880129 |
| 3373 | | Shift along axis -571.76953314 |
| 3374 | | |
| 3375 | | > view matrix models |
| 3376 | | > #10,0.47263,0.83858,0.27091,342.34,0.88089,-0.44067,-0.17274,347.93,-0.025471,0.32029,-0.94698,321.12> |
| 3377 | | > view matrix models |
| 3378 | | > #10,0.24127,0.92096,0.30597,341.95,0.24412,-0.36274,0.89935,352.37,0.93925,-0.14229,-0.31234,327.16> |
| 3379 | | > view matrix models |
| 3380 | | > #10,0.089116,0.82987,0.55079,342.31,-0.78026,-0.28555,0.55647,345.75,0.61908,-0.47935,0.62207,329.83> |
| 3381 | | > view matrix models |
| 3382 | | > #10,-0.47438,-0.76909,-0.42833,324.11,0.36461,-0.61452,0.69959,350.2,-0.80126,0.17569,0.57193,326.56> |
| 3383 | | > view matrix models |
| 3384 | | > #10,0.8148,0.094127,0.57204,341.65,-0.53759,0.49204,0.68476,352.18,-0.21701,-0.86547,0.45151,322.57> |
| 3385 | | > view matrix models |
| 3386 | | > #10,-0.87376,-0.081407,-0.47949,325.83,-0.48429,0.054866,0.87319,351.16,-0.044775,0.99517,-0.087364,330.5> |
| 3387 | | > view matrix models |
| 3388 | | > #10,-0.40191,0.13704,-0.90537,326.52,-0.52762,0.77344,0.35129,351.66,0.74839,0.61887,-0.23855,331.1> |
| 3389 | | > view matrix models |
| 3390 | | > #10,-0.32465,-0.94451,-0.049995,326.28,-0.89222,0.32336,-0.31525,343.02,0.31392,-0.057737,-0.94769,320.55> |
| 3391 | | > view matrix models |
| 3392 | | > #10,-0.31501,-0.94741,-0.05641,326.27,-0.82142,0.30193,-0.48384,342.12,0.47543,-0.10608,-0.87334,321.52> |
| 3393 | | > ui mousemode right "translate selected models"> view matrix models |
| 3394 | | > #10,-0.31501,-0.94741,-0.05641,341.43,-0.82142,0.30193,-0.48384,348.71,0.47543,-0.10608,-0.87334,331.34> |
| 3395 | | > view matrix models |
| 3396 | | > #10,-0.31501,-0.94741,-0.05641,337.08,-0.82142,0.30193,-0.48384,348.47,0.47543,-0.10608,-0.87334,330.53> |
| 3397 | | > ui mousemode right "rotate selected models"> view matrix models |
| 3398 | | > #10,0.010611,-0.96565,-0.25962,337.18,-0.51124,0.2179,-0.83136,347.18,0.85937,0.14155,-0.49137,336.25> |
| 3399 | | > ui mousemode right "translate selected models"> view matrix models |
| 3400 | | > #10,0.010611,-0.96565,-0.25962,339.55,-0.51124,0.2179,-0.83136,353.43,0.85937,0.14155,-0.49137,329.03> |
| 3401 | | > fitmap sel inMap #1Fit molecule AlphaFold P61924 (#10) to map |
| 3402 | | > postprocess.mrc (#1) using 1420 atoms |
| 3403 | | average map value = 0.009324, steps = 52 |
| 3404 | | shifted from previous position = 2.72 |
| 3405 | | rotated from previous position = 13.3 degrees |
| 3406 | | atoms outside contour = 889, contour level = 0.012094 |
| 3407 | | |
| 3408 | | Position of AlphaFold P61924 (#10) relative to postprocess.mrc (#1) |
| 3409 | | coordinates: |
| 3410 | | Matrix rotation and translation |
| 3411 | | 0.17048332 -0.93854234 -0.30012280 342.77250355 |
| 3412 | | -0.36432141 0.22295977 -0.90418960 353.65281294 |
| 3413 | | 0.91553555 0.26349041 -0.30392015 330.16464207 |
| 3414 | | Axis 0.65572776 -0.68267069 0.32246215 |
| 3415 | | Axis point 206.25695508 0.00000000 375.82229589 |
| 3416 | | Rotation angle (degrees) 117.08028278 |
| 3417 | | Shift along axis 89.80263539 |
| 3418 | | |
| 3419 | | > volume #1 level 0.009189> volume #1 level 0.007115> volume #1 level 0.01389> |
| 3420 | | > hide #10 models> hide #!1 models> show #!1 models> volume #1 level 0.009189> |
| 3421 | | > show #9 models> hide #9 models> ui tool show AlphaFoldFetching compressed |
| 3422 | | > Q9QZE5 UniProt info from https://www.uniprot.org/uniprot/Q9QZE5.xml |
| 3423 | | > alphafold match Q9QZE5Fetching compressed AlphaFold Q9QZE5 from |
| 3424 | | > https://alphafold.ebi.ac.uk/files/AF-Q9QZE5-F1-model_v4.cif |
| 3425 | | 1 AlphaFold model found using UniProt identifier: Q9QZE5 (UniProt Q9QZE5) |
| 3426 | | | Sequence Similarity |
| 3427 | | --- |
| 3428 | | AlphaFold Model| Query Sequence| Identity %| Coverage % |
| 3429 | | Q9QZE5 | Q9QZE5 | 100.0 | 100.0 |
| 3430 | | Opened 1 AlphaFold model |
| 3431 | | > select subtract #10Nothing selected |
| 3432 | | > select add #116830 atoms, 6947 bonds, 874 residues, 1 model selected |
| 3433 | | > ui mousemode right "translate selected models"> view matrix models |
| 3434 | | > #11,1,0,0,356.03,0,1,0,165.68,0,0,1,138.04> view matrix models |
| 3435 | | > #11,1,0,0,359.53,0,1,0,310.73,0,0,1,363.97> view matrix models |
| 3436 | | > #11,1,0,0,325.44,0,1,0,350.8,0,0,1,353.56> ui mousemode right "rotate |
| 3437 | | > selected models"> view matrix models |
| 3438 | | > #11,0.9222,0.0092431,-0.38659,322.21,0.3867,-0.02198,0.92194,365.83,2.4106e-05,-0.99972,-0.023845,352.54> |
| 3439 | | > view matrix models |
| 3440 | | > #11,0.9086,0.21861,-0.3559,320.97,0.37966,-0.077076,0.92191,366.2,0.17411,-0.97276,-0.15303,351.69> |
| 3441 | | > view matrix models |
| 3442 | | > #11,0.8827,0.31881,-0.34526,320.3,0.448,-0.34905,0.82308,367.45,0.14189,-0.88121,-0.45093,348.67> |
| 3443 | | > ui mousemode right "translate selected models"> view matrix models |
| 3444 | | > #11,0.8827,0.31881,-0.34526,325.98,0.448,-0.34905,0.82308,376,0.14189,-0.88121,-0.45093,348.84> |
| 3445 | | > ui mousemode right "rotate selected models"> fitmap sel inMap #1Fit molecule |
| 3446 | | > AlphaFold Q9QZE5 (#11) to map postprocess.mrc (#1) using 6830 atoms |
| 3447 | | average map value = 0.006168, steps = 184 |
| 3448 | | shifted from previous position = 19 |
| 3449 | | rotated from previous position = 37.2 degrees |
| 3450 | | atoms outside contour = 4962, contour level = 0.0091892 |
| 3451 | | |
| 3452 | | Position of AlphaFold Q9QZE5 (#11) relative to postprocess.mrc (#1) |
| 3453 | | coordinates: |
| 3454 | | Matrix rotation and translation |
| 3455 | | 0.64421407 0.04551772 -0.76348960 327.38100329 |
| 3456 | | 0.76207078 0.04674821 0.64580394 357.15848158 |
| 3457 | | 0.06508729 -0.99786910 -0.00457187 351.49633213 |
| 3458 | | Axis -0.83213029 -0.41947754 0.36276406 |
| 3459 | | Axis point 0.00000000 331.22710000 127.31166795 |
| 3460 | | Rotation angle (degrees) 99.02148331 |
| 3461 | | Shift along axis -294.73337652 |
| 3462 | | |
| 3463 | | > view matrix models |
| 3464 | | > #11,0.68657,0.17865,-0.70477,327,0.72706,-0.17094,0.66495,358.75,-0.0016791,-0.96895,-0.24726,349.28> |
| 3465 | | > ui mousemode right "rotate selected models"> view matrix models |
| 3466 | | > #11,0.70704,0.23648,-0.66646,326.93,0.69939,-0.37331,0.60951,359.67,-0.10466,-0.89706,-0.42933,347.16> |
| 3467 | | > ui mousemode right "translate selected models"> view matrix models |
| 3468 | | > #11,0.70704,0.23648,-0.66646,317.9,0.69939,-0.37331,0.60951,366.94,-0.10466,-0.89706,-0.42933,348.03> |
| 3469 | | > view matrix models |
| 3470 | | > #11,0.70704,0.23648,-0.66646,320.79,0.69939,-0.37331,0.60951,366.61,-0.10466,-0.89706,-0.42933,348.18> |
| 3471 | | > ui mousemode right "rotate selected models"> view matrix models |
| 3472 | | > #11,0.72406,0.24939,-0.64307,320.91,0.65006,-0.55839,0.51539,367.07,-0.23055,-0.79121,-0.56643,346.13> |
| 3473 | | > view matrix models |
| 3474 | | > #11,0.69859,0.21192,-0.68342,320.81,0.71322,-0.28278,0.64137,366.26,-0.057342,-0.93548,-0.34869,349.16> |
| 3475 | | > view matrix models |
| 3476 | | > #11,0.70353,0.18375,-0.6865,320.99,0.70318,-0.31989,0.63499,366.45,-0.10293,-0.92947,-0.35426,348.99> |
| 3477 | | > ui mousemode right "translate selected models"> view matrix models |
| 3478 | | > #11,0.70353,0.18375,-0.6865,320.82,0.70318,-0.31989,0.63499,367.1,-0.10293,-0.92947,-0.35426,344.89> |
| 3479 | | > ui mousemode right "rotate selected models"> view matrix models |
| 3480 | | > #11,0.65363,0.082985,-0.75225,320.91,0.72471,-0.35506,0.59053,367.04,-0.21809,-0.93115,-0.29222,345.16> |
| 3481 | | > view matrix models |
| 3482 | | > #11,0.70711,0.13906,-0.69329,321.09,0.68996,-0.35029,0.63344,367.27,-0.15477,-0.92626,-0.34365,344.85> |
| 3483 | | > ui mousemode right "translate selected models"> view matrix models |
| 3484 | | > #11,0.70711,0.13906,-0.69329,321.8,0.68996,-0.35029,0.63344,368.61,-0.15477,-0.92626,-0.34365,344.63> |
| 3485 | | > view matrix models |
| 3486 | | > #11,0.70711,0.13906,-0.69329,322.37,0.68996,-0.35029,0.63344,369.31,-0.15477,-0.92626,-0.34365,344.66> |
| 3487 | | > view matrix models |
| 3488 | | > #11,0.70711,0.13906,-0.69329,324.12,0.68996,-0.35029,0.63344,370.34,-0.15477,-0.92626,-0.34365,345.55> |
| 3489 | | > view matrix models |
| 3490 | | > #11,0.70711,0.13906,-0.69329,322.98,0.68996,-0.35029,0.63344,370.13,-0.15477,-0.92626,-0.34365,345.67> |
| 3491 | | > select #9:150-7004326 atoms, 4409 bonds, 551 residues, 1 model selected |
| 3492 | | > select #11:150-7004309 atoms, 4386 bonds, 551 residues, 1 model selected |
| 3493 | | > select #11:200-6003131 atoms, 3181 bonds, 401 residues, 1 model selected |
| 3494 | | > fitmap sel inMap #1Fit molecule AlphaFold Q9QZE5 (#11) to map |
| 3495 | | > postprocess.mrc (#1) using 3131 atoms |
| 3496 | | average map value = 0.009322, steps = 128 |
| 3497 | | shifted from previous position = 19.2 |
| 3498 | | rotated from previous position = 36.2 degrees |
| 3499 | | atoms outside contour = 1622, contour level = 0.0091892 |
| 3500 | | |
| 3501 | | Position of AlphaFold Q9QZE5 (#11) relative to postprocess.mrc (#1) |
| 3502 | | coordinates: |
| 3503 | | Matrix rotation and translation |
| 3504 | | 0.30390324 -0.27752474 -0.91138512 331.87408644 |
| 3505 | | 0.81454234 -0.42047696 0.39964972 364.79747780 |
| 3506 | | -0.49412913 -0.86381661 0.09827134 355.85181394 |
| 3507 | | Axis -0.73399556 -0.24239984 0.63442323 |
| 3508 | | Axis point 0.00000000 292.03466120 189.63734203 |
| 3509 | | Rotation angle (degrees) 120.60730761 |
| 3510 | | Shift along axis -106.26030233 |
| 3511 | | |
| 3512 | | > ui mousemode right "translate selected models"> view matrix models |
| 3513 | | > #11,0.3039,-0.27752,-0.91139,332.27,0.81454,-0.42048,0.39965,364.09,-0.49413,-0.86382,0.098271,356.72> |
| 3514 | | > ui mousemode right "rotate selected models"> view matrix models |
| 3515 | | > #11,0.27029,-0.28399,-0.91994,332.18,0.8111,-0.44762,0.3765,364.09,-0.51871,-0.84793,0.10935,356.65> |
| 3516 | | > select #11:200-6003131 atoms, 3181 bonds, 401 residues, 1 model selected |
| 3517 | | > select #11:200-6003131 atoms, 3181 bonds, 401 residues, 1 model selected |
| 3518 | | > view matrix models |
| 3519 | | > #11,0.25475,-0.2793,-0.92579,332.07,0.83477,-0.41974,0.35634,363.79,-0.48812,-0.8636,0.12622,356.95> |
| 3520 | | > ui mousemode right "translate selected models"> view matrix models |
| 3521 | | > #11,0.25475,-0.2793,-0.92579,331.84,0.83477,-0.41974,0.35634,363.99,-0.48812,-0.8636,0.12622,355.77> |
| 3522 | | > select #11:200-6003131 atoms, 3181 bonds, 401 residues, 1 model selected |
| 3523 | | > view matrix models |
| 3524 | | > #11,0.25475,-0.2793,-0.92579,331.9,0.83477,-0.41974,0.35634,364.24,-0.48812,-0.8636,0.12622,354.72> |
| 3525 | | > volume #1 level 0.00753> volume #1 level 0.01057> select #11:1-2241761 |
| 3526 | | > atoms, 1788 bonds, 224 residues, 1 model selected |
| 3527 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 3528 | | > (#11) to map postprocess.mrc (#1) using 1761 atoms |
| 3529 | | average map value = 0.01173, steps = 68 |
| 3530 | | shifted from previous position = 9.15 |
| 3531 | | rotated from previous position = 24.1 degrees |
| 3532 | | atoms outside contour = 823, contour level = 0.010572 |
| 3533 | | |
| 3534 | | > volume #1 level 0.008774> volume #1 level 0.006146> hide #!1 models> select |
| 3535 | | > #11:600-100Nothing selected |
| 3536 | | > select #11:600-10002157 atoms, 2199 bonds, 275 residues, 1 model selected |
| 3537 | | > show #!1 models> fitmap sel inMap #1Fit molecule AlphaFold Q9QZE5 (#11) to |
| 3538 | | > map postprocess.mrc (#1) using 2157 atoms |
| 3539 | | average map value = 0.007662, steps = 180 |
| 3540 | | shifted from previous position = 36.1 |
| 3541 | | rotated from previous position = 68.3 degrees |
| 3542 | | atoms outside contour = 810, contour level = 0.0061465 |
| 3543 | | |
| 3544 | | Position of AlphaFold Q9QZE5 (#11) relative to postprocess.mrc (#1) |
| 3545 | | coordinates: |
| 3546 | | Matrix rotation and translation |
| 3547 | | 0.76148885 0.54060767 -0.35760046 330.05520628 |
| 3548 | | 0.64193837 -0.55263312 0.53151836 340.37180485 |
| 3549 | | 0.08972105 -0.63430276 -0.76786076 354.04518222 |
| 3550 | | Axis -0.93057375 -0.35705791 0.08088350 |
| 3551 | | Axis point 0.00000000 179.94741315 154.00557546 |
| 3552 | | Rotation angle (degrees) 141.21504880 |
| 3553 | | Shift along axis -400.03674317 |
| 3554 | | |
| 3555 | | > view matrix models |
| 3556 | | > #11,0.76149,0.54061,-0.3576,333.13,0.64194,-0.55263,0.53152,344.1,0.089721,-0.6343,-0.76786,355.44> |
| 3557 | | > undo[Repeated 1 time(s)]> redo> undo[Repeated 4 time(s)]> redo[Repeated 5 |
| 3558 | | > time(s)]Drag select of 1 postprocess.mrc |
| 3559 | | > undo[Repeated 3 time(s)]> redo[Repeated 1 time(s)]> undo[Repeated 4 |
| 3560 | | > time(s)]> select add #116830 atoms, 6947 bonds, 874 residues, 1 model |
| 3561 | | > selected |
| 3562 | | > view matrix models |
| 3563 | | > #11,0.76149,0.54061,-0.3576,311.64,0.64194,-0.55263,0.53152,361.96,0.089721,-0.6343,-0.76786,347.28> |
| 3564 | | > ui mousemode right "rotate selected models"> view matrix models |
| 3565 | | > #11,0.53048,-0.23713,-0.81386,311.44,0.61272,-0.5562,0.56143,362.09,-0.5858,-0.7965,-0.14976,350.16> |
| 3566 | | > view matrix models |
| 3567 | | > #11,0.63273,-0.2207,-0.74226,312.29,0.42526,-0.70202,0.57125,362.21,-0.64715,-0.6771,-0.35033,347.77> |
| 3568 | | > view matrix models |
| 3569 | | > #11,0.44433,0.080458,-0.89224,308.81,0.697,-0.65675,0.28787,360.89,-0.56282,-0.7498,-0.34789,348.5> |
| 3570 | | > view matrix models |
| 3571 | | > #11,0.54362,-0.27815,-0.7919,311.87,0.82504,0.0037442,0.56506,359.97,-0.1542,-0.96053,0.23152,355.62> |
| 3572 | | > view matrix models |
| 3573 | | > #11,-0.061484,-0.33761,-0.93927,308.7,0.84092,-0.52444,0.13346,359.59,-0.53765,-0.78165,0.31615,353.8> |
| 3574 | | > view matrix models |
| 3575 | | > #11,-0.23566,-0.13852,-0.96191,306.78,0.80998,-0.57494,-0.11565,357.85,-0.53702,-0.80639,0.24769,353.41> |
| 3576 | | > ui mousemode right "translate selected models"> view matrix models |
| 3577 | | > #11,-0.23566,-0.13852,-0.96191,332.21,0.80998,-0.57494,-0.11565,366.09,-0.53702,-0.80639,0.24769,356.19> |
| 3578 | | > fitmap sel inMap #1Fit molecule AlphaFold Q9QZE5 (#11) to map |
| 3579 | | > postprocess.mrc (#1) using 6830 atoms |
| 3580 | | average map value = 0.006152, steps = 88 |
| 3581 | | shifted from previous position = 5.62 |
| 3582 | | rotated from previous position = 9.14 degrees |
| 3583 | | atoms outside contour = 4002, contour level = 0.0061465 |
| 3584 | | |
| 3585 | | Position of AlphaFold Q9QZE5 (#11) relative to postprocess.mrc (#1) |
| 3586 | | coordinates: |
| 3587 | | Matrix rotation and translation |
| 3588 | | -0.08853631 -0.08927349 -0.99206430 328.87288070 |
| 3589 | | 0.81371062 -0.58091406 -0.02034415 362.70357604 |
| 3590 | | -0.57448790 -0.80905445 0.12407477 357.29597121 |
| 3591 | | Axis -0.62124086 -0.32891103 0.71125054 |
| 3592 | | Axis point 234.92409049 335.88873344 0.00000000 |
| 3593 | | Rotation angle (degrees) 140.59586808 |
| 3594 | | Shift along axis -69.47952713 |
| 3595 | | |
| 3596 | | > volume #1 level 0.01043> view matrix models |
| 3597 | | > #11,-0.088536,-0.089273,-0.99206,325.48,0.81371,-0.58091,-0.020344,351.26,-0.57449,-0.80905,0.12407,355.86> |
| 3598 | | > view matrix models |
| 3599 | | > #11,-0.088536,-0.089273,-0.99206,333.51,0.81371,-0.58091,-0.020344,354.7,-0.57449,-0.80905,0.12407,353.84> |
| 3600 | | > view matrix models |
| 3601 | | > #11,-0.088536,-0.089273,-0.99206,328.18,0.81371,-0.58091,-0.020344,355.32,-0.57449,-0.80905,0.12407,354.03> |
| 3602 | | > ui mousemode right "rotate selected models"> view matrix models |
| 3603 | | > #11,-0.28036,-0.26113,-0.92369,328.86,0.75357,-0.65594,-0.04329,355.31,-0.59458,-0.70821,0.38068,355.35> |
| 3604 | | > view matrix models |
| 3605 | | > #11,-0.030932,-0.050662,-0.99824,328.15,0.76228,-0.64718,0.0092245,355.69,-0.6465,-0.76066,0.058638,352.99> |
| 3606 | | > view matrix models |
| 3607 | | > #11,0.061156,-0.1302,-0.9896,329,0.95467,-0.28175,0.096068,355.16,-0.29133,-0.95061,0.10707,355.77> |
| 3608 | | > view matrix models |
| 3609 | | > #11,0.04603,-0.17237,-0.98396,329.21,0.96144,-0.2597,0.090472,355.02,-0.27113,-0.95018,0.15377,356.2> |
| 3610 | | > view matrix models |
| 3611 | | > #11,0.0023262,-0.10506,-0.99446,328.6,0.8618,-0.50423,0.055288,355.67,-0.50725,-0.85715,0.089372,354.29> |
| 3612 | | > view matrix models |
| 3613 | | > #11,-0.18991,-0.3505,-0.91711,329.74,0.88807,-0.45964,-0.0082315,355.06,-0.41865,-0.81601,0.39856,356.75> |
| 3614 | | > view matrix models |
| 3615 | | > #11,-0.080938,-0.34798,-0.934,330.03,0.98708,-0.15797,-0.026682,353.69,-0.13826,-0.9241,0.35627,358.11> |
| 3616 | | > view matrix models |
| 3617 | | > #11,0.011068,-0.0051088,-0.99993,328.06,0.98507,-0.17174,0.011781,354.05,-0.17179,-0.98513,0.0031317,355.64> |
| 3618 | | > view matrix models |
| 3619 | | > #11,0.52954,-0.35911,-0.76852,333.74,0.78751,-0.12862,0.60273,357.51,-0.31529,-0.92439,0.21469,356.35> |
| 3620 | | > view matrix models |
| 3621 | | > #11,0.57219,-0.27083,-0.77411,333.39,0.78422,-0.095517,0.61308,357.4,-0.23998,-0.95788,0.15774,356.39> |
| 3622 | | > ui mousemode right "rotate selected models"> ui mousemode right "translate |
| 3623 | | > selected models"> view matrix models |
| 3624 | | > #11,0.57219,-0.27083,-0.77411,335.51,0.78422,-0.095517,0.61308,362.58,-0.23998,-0.95788,0.15774,351.6> |
| 3625 | | > fitmap sel inMap #1Fit molecule AlphaFold Q9QZE5 (#11) to map |
| 3626 | | > postprocess.mrc (#1) using 6830 atoms |
| 3627 | | average map value = 0.0064, steps = 84 |
| 3628 | | shifted from previous position = 5.2 |
| 3629 | | rotated from previous position = 12.7 degrees |
| 3630 | | atoms outside contour = 5219, contour level = 0.010434 |
| 3631 | | |
| 3632 | | Position of AlphaFold Q9QZE5 (#11) relative to postprocess.mrc (#1) |
| 3633 | | coordinates: |
| 3634 | | Matrix rotation and translation |
| 3635 | | 0.66131608 -0.21078491 -0.71988247 333.61865897 |
| 3636 | | 0.74780498 0.11012805 0.65472095 360.57382072 |
| 3637 | | -0.05872604 -0.97130919 0.23045545 348.57872255 |
| 3638 | | Axis -0.81301543 -0.33057836 0.47929516 |
| 3639 | | Axis point 0.00000000 392.94052784 96.12016323 |
| 3640 | | Rotation angle (degrees) 89.94558111 |
| 3641 | | Shift along axis -223.36292607 |
| 3642 | | |
| 3643 | | > view matrix models |
| 3644 | | > #11,0.66132,-0.21078,-0.71988,341.27,0.7478,0.11013,0.65472,365.27,-0.058726,-0.97131,0.23046,355.25> |
| 3645 | | > ui mousemode right "rotate selected models"> view matrix models |
| 3646 | | > #11,0.53948,-0.29131,-0.79,340.69,0.59896,-0.52665,0.60322,367.7,-0.59178,-0.79861,-0.10964,349.66> |
| 3647 | | > view matrix models |
| 3648 | | > #11,0.46778,-0.17957,-0.86541,339.24,0.68801,-0.54066,0.48407,367.22,-0.55482,-0.82185,-0.12936,349.78> |
| 3649 | | > ui mousemode right "translate selected models"> view matrix models |
| 3650 | | > #11,0.46778,-0.17957,-0.86541,332.04,0.68801,-0.54066,0.48407,368.06,-0.55482,-0.82185,-0.12936,351.26> |
| 3651 | | > ui mousemode right "rotate selected models"> view matrix models |
| 3652 | | > #11,0.1232,-0.023189,-0.99211,328.89,0.74196,-0.66175,0.10761,366.07,-0.65902,-0.74937,-0.064325,350.95> |
| 3653 | | > view matrix models |
| 3654 | | > #11,0.16935,-0.30285,-0.93787,330.98,0.7448,-0.58389,0.32303,367.3,-0.64544,-0.75323,0.12669,352.47> |
| 3655 | | > view matrix models |
| 3656 | | > #11,0.14032,-0.13117,-0.98138,329.62,0.74434,-0.63963,0.19192,366.6,-0.65289,-0.75741,0.0078783,351.57> |
| 3657 | | > view matrix models |
| 3658 | | > #11,0.23167,-0.1013,-0.9675,329.92,0.76523,-0.59508,0.24555,366.85,-0.60062,-0.79725,-0.060342,351.47> |
| 3659 | | > view matrix models |
| 3660 | | > #11,0.24437,-0.094002,-0.96511,329.95,0.76843,-0.58828,0.25187,366.87,-0.59143,-0.80318,-0.071526,351.45> |
| 3661 | | > ui mousemode right "translate selected models"> view matrix models |
| 3662 | | > #11,0.24437,-0.094002,-0.96511,329.54,0.76843,-0.58828,0.25187,361.23,-0.59143,-0.80318,-0.071526,350.08> |
| 3663 | | > ui mousemode right "rotate selected models"> view matrix models |
| 3664 | | > #11,0.28058,-0.25967,-0.92404,330.88,0.77353,-0.50879,0.37786,361.78,-0.56826,-0.82079,0.058108,351.25> |
| 3665 | | > view matrix models |
| 3666 | | > #11,0.28742,-0.25679,-0.92274,330.9,0.75767,-0.5284,0.38305,361.86,-0.58594,-0.80923,0.042695,351> |
| 3667 | | > ui mousemode right "translate selected models"> view matrix models |
| 3668 | | > #11,0.28742,-0.25679,-0.92274,333.19,0.75767,-0.5284,0.38305,365.36,-0.58594,-0.80923,0.042695,355.22> |
| 3669 | | > view matrix models |
| 3670 | | > #11,0.28742,-0.25679,-0.92274,331.2,0.75767,-0.5284,0.38305,365.15,-0.58594,-0.80923,0.042695,354.9> |
| 3671 | | > view matrix models |
| 3672 | | > #11,0.28742,-0.25679,-0.92274,331.85,0.75767,-0.5284,0.38305,365.37,-0.58594,-0.80923,0.042695,355.26> |
| 3673 | | > select up46543 atoms, 47426 bonds, 5886 residues, 13 models selected |
| 3674 | | > select up46543 atoms, 47426 bonds, 5886 residues, 13 models selected |
| 3675 | | > select down6830 atoms, 6947 bonds, 874 residues, 1 model selected |
| 3676 | | > select #11:1-6004682 atoms, 4756 bonds, 600 residues, 1 model selected |
| 3677 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 3678 | | > (#11) to map postprocess.mrc (#1) using 4682 atoms |
| 3679 | | average map value = 0.01021, steps = 60 |
| 3680 | | shifted from previous position = 1.22 |
| 3681 | | rotated from previous position = 7.73 degrees |
| 3682 | | atoms outside contour = 2553, contour level = 0.010434 |
| 3683 | | |
| 3684 | | > select #11:600-10002157 atoms, 2199 bonds, 275 residues, 1 model selected |
| 3685 | | > ui mousemode right "translate selected atoms"> volume #1 level 0.007668> ui |
| 3686 | | > mousemode right "rotate selected models"> ui mousemode right "translate |
| 3687 | | > selected atoms"> ui mousemode right "rotate selected models"> view matrix |
| 3688 | | > models |
| 3689 | | > #11,0.59822,-0.60725,-0.52286,337.58,0.30921,-0.42703,0.84972,366.3,-0.73927,-0.66999,-0.067694,353.2> |
| 3690 | | > view matrix models |
| 3691 | | > #11,0.77041,-0.50997,-0.38262,338.97,0.12293,-0.47006,0.87403,365.81,-0.62559,-0.7204,-0.29944,352.25> |
| 3692 | | > view matrix models |
| 3693 | | > #11,0.80145,-0.49595,-0.33423,339.41,0.030481,-0.52426,0.85101,365.44,-0.59728,-0.69223,-0.40505,351.5> |
| 3694 | | > view matrix models |
| 3695 | | > #11,0.81806,-0.46811,-0.33414,339.37,0.21046,-0.29705,0.93138,365.91,-0.53524,-0.83225,-0.14448,354.23> |
| 3696 | | > ui mousemode right "translate selected models"> view matrix models |
| 3697 | | > #11,0.81806,-0.46811,-0.33414,336.18,0.21046,-0.29705,0.93138,386.15,-0.53524,-0.83225,-0.14448,359.02> |
| 3698 | | > view matrix models |
| 3699 | | > #11,0.81806,-0.46811,-0.33414,336.3,0.21046,-0.29705,0.93138,388.9,-0.53524,-0.83225,-0.14448,350.26> |
| 3700 | | > view matrix models |
| 3701 | | > #11,0.81806,-0.46811,-0.33414,333.59,0.21046,-0.29705,0.93138,393.22,-0.53524,-0.83225,-0.14448,351.16> |
| 3702 | | > view matrix models |
| 3703 | | > #11,0.81806,-0.46811,-0.33414,333.2,0.21046,-0.29705,0.93138,389.47,-0.53524,-0.83225,-0.14448,356.78> |
| 3704 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 3705 | | > (#11) to map postprocess.mrc (#1) using 2157 atoms |
| 3706 | | average map value = 0.006694, steps = 136 |
| 3707 | | shifted from previous position = 5.04 |
| 3708 | | rotated from previous position = 47.1 degrees |
| 3709 | | atoms outside contour = 1445, contour level = 0.0076678 |
| 3710 | | |
| 3711 | | > select #11:1-6004682 atoms, 4756 bonds, 600 residues, 1 model selected |
| 3712 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 3713 | | > (#11) to map postprocess.mrc (#1) using 4682 atoms |
| 3714 | | average map value = 0.008066, steps = 172 |
| 3715 | | shifted from previous position = 26 |
| 3716 | | rotated from previous position = 33 degrees |
| 3717 | | atoms outside contour = 2547, contour level = 0.0076678 |
| 3718 | | |
| 3719 | | > view matrix models |
| 3720 | | > #11,0.81806,-0.46811,-0.33414,331.26,0.21046,-0.29705,0.93138,386.86,-0.53524,-0.83225,-0.14448,361.45> |
| 3721 | | > select #11:1-6004682 atoms, 4756 bonds, 600 residues, 1 model selected |
| 3722 | | > view matrix models |
| 3723 | | > #11,0.81806,-0.46811,-0.33414,331.71,0.21046,-0.29705,0.93138,389.51,-0.53524,-0.83225,-0.14448,361.48> |
| 3724 | | > volume #1 level 0.009742> view matrix models |
| 3725 | | > #11,0.81806,-0.46811,-0.33414,331,0.21046,-0.29705,0.93138,393.38,-0.53524,-0.83225,-0.14448,362.84> |
| 3726 | | > view matrix models |
| 3727 | | > #11,0.81806,-0.46811,-0.33414,331.73,0.21046,-0.29705,0.93138,391.47,-0.53524,-0.83225,-0.14448,362.19> |
| 3728 | | > ui mousemode right "rotate selected models"> view matrix models |
| 3729 | | > #11,0.83824,-0.4494,-0.30887,332.09,0.11909,-0.40187,0.90792,391.51,-0.53214,-0.79784,-0.28334,359.59> |
| 3730 | | > select #11:1-6004682 atoms, 4756 bonds, 600 residues, 1 model selected |
| 3731 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 3732 | | > (#11) to map postprocess.mrc (#1) using 4682 atoms |
| 3733 | | average map value = 0.008066, steps = 120 |
| 3734 | | shifted from previous position = 7.42 |
| 3735 | | rotated from previous position = 8.32 degrees |
| 3736 | | atoms outside contour = 3016, contour level = 0.0097424 |
| 3737 | | |
| 3738 | | > view matrix models |
| 3739 | | > #11,0.84176,-0.43937,-0.31369,331.92,0.02953,-0.54272,0.8394,391.99,-0.53905,-0.71583,-0.44386,356.49> |
| 3740 | | > ui mousemode right "translate selected models"> view matrix models |
| 3741 | | > #11,0.84176,-0.43937,-0.31369,331.75,0.02953,-0.54272,0.8394,399.15,-0.53905,-0.71583,-0.44386,356.2> |
| 3742 | | > select #11:1-6004682 atoms, 4756 bonds, 600 residues, 1 model selected |
| 3743 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 3744 | | > (#11) to map postprocess.mrc (#1) using 4682 atoms |
| 3745 | | average map value = 0.008066, steps = 76 |
| 3746 | | shifted from previous position = 5.51 |
| 3747 | | rotated from previous position = 10.3 degrees |
| 3748 | | atoms outside contour = 3011, contour level = 0.0097424 |
| 3749 | | |
| 3750 | | > ui mousemode right "translate selected models"> view matrix models |
| 3751 | | > #11,0.84176,-0.43937,-0.31369,332.74,0.02953,-0.54272,0.8394,408.41,-0.53905,-0.71583,-0.44386,358.5> |
| 3752 | | > ui mousemode right "rotate selected models"> view matrix models |
| 3753 | | > #11,0.85268,-0.42149,-0.30869,332.59,-0.0092437,-0.60295,0.79773,408.46,-0.52236,-0.67735,-0.51802,356.68> |
| 3754 | | > ui mousemode right "translate selected models"> view matrix models |
| 3755 | | > #11,0.85268,-0.42149,-0.30869,330.72,-0.0092437,-0.60295,0.79773,400.46,-0.52236,-0.67735,-0.51802,359.82> |
| 3756 | | > select #11:1-6004682 atoms, 4756 bonds, 600 residues, 1 model selected |
| 3757 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 3758 | | > (#11) to map postprocess.mrc (#1) using 4682 atoms |
| 3759 | | average map value = 0.008065, steps = 68 |
| 3760 | | shifted from previous position = 7.07 |
| 3761 | | rotated from previous position = 4.73 degrees |
| 3762 | | atoms outside contour = 3010, contour level = 0.0097424 |
| 3763 | | |
| 3764 | | > view matrix models |
| 3765 | | > #11,0.85268,-0.42149,-0.30869,335.88,-0.0092437,-0.60295,0.79773,405.4,-0.52236,-0.67735,-0.51802,361.17> |
| 3766 | | > ui mousemode right "rotate selected models"> view matrix models |
| 3767 | | > #11,0.81426,-0.46494,-0.34757,336.1,-0.098912,-0.70112,0.70615,405.87,-0.57201,-0.54061,-0.61688,358.39> |
| 3768 | | > view matrix models |
| 3769 | | > #11,0.87501,-0.41991,-0.24091,336.8,-0.20539,-0.77263,0.60071,405.97,-0.43838,-0.47615,-0.76231,353.76> |
| 3770 | | > ui mousemode right "translate selected models"> view matrix models |
| 3771 | | > #11,0.87501,-0.41991,-0.24091,331.82,-0.20539,-0.77263,0.60071,413.52,-0.43838,-0.47615,-0.76231,351.86> |
| 3772 | | > select #11:1-6004682 atoms, 4756 bonds, 600 residues, 1 model selected |
| 3773 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 3774 | | > (#11) to map postprocess.mrc (#1) using 4682 atoms |
| 3775 | | average map value = 0.007962, steps = 124 |
| 3776 | | shifted from previous position = 9.84 |
| 3777 | | rotated from previous position = 14.7 degrees |
| 3778 | | atoms outside contour = 3070, contour level = 0.0097424 |
| 3779 | | |
| 3780 | | > view matrix models |
| 3781 | | > #11,0.87501,-0.41991,-0.24091,331.62,-0.20539,-0.77263,0.60071,418.42,-0.43838,-0.47615,-0.76231,353.39> |
| 3782 | | > close #11> show #9 models> close #9> ui tool show AlphaFold> alphafold match |
| 3783 | | > Q9QZE51 AlphaFold model found using UniProt identifier: Q9QZE5 (UniProt |
| 3784 | | > Q9QZE5) |
| 3785 | | | Sequence Similarity |
| 3786 | | --- |
| 3787 | | AlphaFold Model| Query Sequence| Identity %| Coverage % |
| 3788 | | Q9QZE5 | Q9QZE5 | 100.0 | 100.0 |
| 3789 | | Opened 1 AlphaFold model |
| 3790 | | > select add #96830 atoms, 6947 bonds, 874 residues, 1 model selected |
| 3791 | | > view matrix models #9,1,0,0,118.39,0,1,0,297.25,0,0,1,-11.337> view matrix |
| 3792 | | > models #9,1,0,0,245.71,0,1,0,231.28,0,0,1,332.27> view matrix models |
| 3793 | | > #9,1,0,0,318.92,0,1,0,322.38,0,0,1,318.53> ui mousemode right "rotate |
| 3794 | | > selected models"> view matrix models |
| 3795 | | > #9,-0.20377,-0.7111,-0.67292,316.26,-0.33161,-0.59657,0.73084,338.5,-0.92115,0.37207,-0.11425,305.47> |
| 3796 | | > view matrix models |
| 3797 | | > #9,0.40243,-0.79107,-0.46073,319.66,-0.60017,-0.60801,0.51973,336.41,-0.69127,0.067364,-0.71945,303.33> |
| 3798 | | > view matrix models |
| 3799 | | > #9,0.2352,-0.84344,-0.48301,319.52,-0.43876,-0.53557,0.72157,337.79,-0.86728,0.042207,-0.49603,304.89> |
| 3800 | | > ui mousemode right "translate selected models"> view matrix models |
| 3801 | | > #9,0.2352,-0.84344,-0.48301,339.88,-0.43876,-0.53557,0.72157,350.3,-0.86728,0.042207,-0.49603,367.19> |
| 3802 | | > ui mousemode right "translate selected models"> view matrix models |
| 3803 | | > #9,0.2352,-0.84344,-0.48301,334.21,-0.43876,-0.53557,0.72157,375.08,-0.86728,0.042207,-0.49603,349.36> |
| 3804 | | > volume #1 level 0.007391> view matrix models |
| 3805 | | > #9,0.2352,-0.84344,-0.48301,333.8,-0.43876,-0.53557,0.72157,373.64,-0.86728,0.042207,-0.49603,349.96> |
| 3806 | | > ui mousemode right "rotate selected models"> view matrix models |
| 3807 | | > #9,0.037657,-0.31194,-0.94935,326.09,0.77359,0.61048,-0.16991,361.13,0.63256,-0.72802,0.26431,364.17> |
| 3808 | | > view matrix models |
| 3809 | | > #9,-0.95684,0.046043,-0.28694,326.81,0.27591,-0.16616,-0.94671,359.5,-0.091268,-0.98502,0.14629,363.62> |
| 3810 | | > ui mousemode right "translate selected models"> view matrix models |
| 3811 | | > #9,-0.95684,0.046043,-0.28694,331.91,0.27591,-0.16616,-0.94671,384.35,-0.091268,-0.98502,0.14629,352.91> |
| 3812 | | > view matrix models |
| 3813 | | > #9,-0.95684,0.046043,-0.28694,334.19,0.27591,-0.16616,-0.94671,381.78,-0.091268,-0.98502,0.14629,351.78> |
| 3814 | | > ui mousemode right "rotate selected models"> view matrix models |
| 3815 | | > #9,-0.97567,0.091702,-0.19917,334.52,0.18187,0.84583,-0.50148,378.03,0.12248,-0.5255,-0.84193,341.32> |
| 3816 | | > view matrix models |
| 3817 | | > #9,-0.89837,0.36972,0.23715,336.14,0.02583,0.58344,-0.81174,377.13,-0.43848,-0.72312,-0.5337,343.99> |
| 3818 | | > ui mousemode right "translate selected models"> view matrix models |
| 3819 | | > #9,-0.89837,0.36972,0.23715,349.82,0.02583,0.58344,-0.81174,385.82,-0.43848,-0.72312,-0.5337,339.33> |
| 3820 | | > view matrix models |
| 3821 | | > #9,-0.89837,0.36972,0.23715,367.42,0.02583,0.58344,-0.81174,403.32,-0.43848,-0.72312,-0.5337,355.2> |
| 3822 | | > view matrix models |
| 3823 | | > #9,-0.89837,0.36972,0.23715,347.32,0.02583,0.58344,-0.81174,411.68,-0.43848,-0.72312,-0.5337,366.13> |
| 3824 | | > fitmap sel inMap #1Fit molecule AlphaFold Q9QZE5 (#9) to map postprocess.mrc |
| 3825 | | > (#1) using 6830 atoms |
| 3826 | | average map value = 0.00421, steps = 156 |
| 3827 | | shifted from previous position = 18.9 |
| 3828 | | rotated from previous position = 17.4 degrees |
| 3829 | | atoms outside contour = 5527, contour level = 0.0073912 |
| 3830 | | |
| 3831 | | Position of AlphaFold Q9QZE5 (#9) relative to postprocess.mrc (#1) |
| 3832 | | coordinates: |
| 3833 | | Matrix rotation and translation |
| 3834 | | -0.73010351 0.53319212 0.42738160 358.86359853 |
| 3835 | | -0.02431141 0.60476967 -0.79602928 406.65494151 |
| 3836 | | -0.68290397 -0.59157401 -0.42858180 351.34455561 |
| 3837 | | Axis 0.16238138 0.88180517 -0.44277752 |
| 3838 | | Axis point 235.81219866 0.00000000 214.20078465 |
| 3839 | | Rotation angle (degrees) 140.98287405 |
| 3840 | | Shift along axis 261.29572483 |
| 3841 | | |
| 3842 | | > view matrix models |
| 3843 | | > #9,-0.7301,0.53319,0.42738,360.6,-0.024311,0.60477,-0.79603,408.44,-0.6829,-0.59157,-0.42858,351.39> |
| 3844 | | > ui mousemode right "rotate selected models"> view matrix models |
| 3845 | | > #9,-0.58923,0.65779,0.46916,360.34,-0.26987,0.38709,-0.88166,408.8,-0.76156,-0.64612,-0.050566,354.56> |
| 3846 | | > ui mousemode right "translate selected models"> view matrix models |
| 3847 | | > #9,-0.58923,0.65779,0.46916,366.58,-0.26987,0.38709,-0.88166,401.14,-0.76156,-0.64612,-0.050566,353.1> |
| 3848 | | > view matrix models |
| 3849 | | > #9,-0.58923,0.65779,0.46916,367.47,-0.26987,0.38709,-0.88166,401.19,-0.76156,-0.64612,-0.050566,356.86> |
| 3850 | | > view matrix models |
| 3851 | | > #9,-0.58923,0.65779,0.46916,363.55,-0.26987,0.38709,-0.88166,400.39,-0.76156,-0.64612,-0.050566,356.65> |
| 3852 | | > view matrix models |
| 3853 | | > #9,-0.58923,0.65779,0.46916,359.48,-0.26987,0.38709,-0.88166,398.89,-0.76156,-0.64612,-0.050566,358.85> |
| 3854 | | > select #11:600-1000Nothing selected |
| 3855 | | > select #9:600-10002157 atoms, 2199 bonds, 275 residues, 1 model selected |
| 3856 | | > fitmap sel inMap #1Fit molecule AlphaFold Q9QZE5 (#9) to map postprocess.mrc |
| 3857 | | > (#1) using 2157 atoms |
| 3858 | | average map value = 0.007022, steps = 288 |
| 3859 | | shifted from previous position = 27 |
| 3860 | | rotated from previous position = 73.2 degrees |
| 3861 | | atoms outside contour = 1209, contour level = 0.0073912 |
| 3862 | | |
| 3863 | | Position of AlphaFold Q9QZE5 (#9) relative to postprocess.mrc (#1) |
| 3864 | | coordinates: |
| 3865 | | Matrix rotation and translation |
| 3866 | | -0.99844607 0.01106931 0.05461602 354.19039505 |
| 3867 | | -0.00738039 0.94517341 -0.32648548 407.33487213 |
| 3868 | | -0.05523558 -0.32638123 -0.94362298 352.18820987 |
| 3869 | | Axis 0.00093588 0.98618731 -0.16563126 |
| 3870 | | Axis point 182.68264138 0.00000000 205.30019773 |
| 3871 | | Rotation angle (degrees) 176.80725389 |
| 3872 | | Shift along axis 343.70658489 |
| 3873 | | |
| 3874 | | > view matrix models |
| 3875 | | > #9,-0.99845,0.011069,0.054616,346.87,-0.0073804,0.94517,-0.32649,422.05,-0.055236,-0.32638,-0.94362,361.2> |
| 3876 | | > ui mousemode right "rotate selected models"> view matrix models |
| 3877 | | > #9,0.24304,0.92608,0.28863,344.77,-0.96288,0.1943,0.18735,429.39,0.11742,-0.32345,0.93893,376.16> |
| 3878 | | > view matrix models |
| 3879 | | > #9,0.043178,-0.27177,-0.96139,342.97,-0.82891,-0.54693,0.11738,434.25,-0.55772,0.79184,-0.24889,357.85> |
| 3880 | | > view matrix models |
| 3881 | | > #9,-0.74057,-0.19028,-0.64448,343.33,0.61567,-0.57643,-0.53729,432.2,-0.26926,-0.79469,0.54403,375.61> |
| 3882 | | > view matrix models |
| 3883 | | > #9,-0.74409,-0.15124,-0.65074,343.01,0.29262,0.80185,-0.52096,422.12,0.60059,-0.57806,-0.55239,367.28> |
| 3884 | | > view matrix models |
| 3885 | | > #9,-0.46898,0.34464,0.81319,351.49,-0.6805,0.44592,-0.58144,422.21,-0.56301,-0.82606,0.0254,371.21> |
| 3886 | | > view matrix models |
| 3887 | | > #9,-0.46134,0.36344,0.80937,351.35,-0.68581,0.43267,-0.5852,422.26,-0.56287,-0.82505,0.049642,371.39> |
| 3888 | | > view matrix models |
| 3889 | | > #9,-0.49256,0.49302,0.71716,349.67,-0.52447,0.48945,-0.69669,421.32,-0.69449,-0.71929,0.017488,370.15> |
| 3890 | | > ui mousemode right "translate selected models"> view matrix models |
| 3891 | | > #9,-0.49256,0.49302,0.71716,358.65,-0.52447,0.48945,-0.69669,413.12,-0.69449,-0.71929,0.017488,349.65> |
| 3892 | | > ui mousemode right "translate selected models"> view matrix models |
| 3893 | | > #9,-0.49256,0.49302,0.71716,356.89,-0.52447,0.48945,-0.69669,395.25,-0.69449,-0.71929,0.017488,359.86> |
| 3894 | | > view matrix models |
| 3895 | | > #9,-0.49256,0.49302,0.71716,355.55,-0.52447,0.48945,-0.69669,394.68,-0.69449,-0.71929,0.017488,359.36> |
| 3896 | | > view matrix models |
| 3897 | | > #9,-0.49256,0.49302,0.71716,356.39,-0.52447,0.48945,-0.69669,395.57,-0.69449,-0.71929,0.017488,359.67> |
| 3898 | | > view matrix models |
| 3899 | | > #9,-0.49256,0.49302,0.71716,356.3,-0.52447,0.48945,-0.69669,392.38,-0.69449,-0.71929,0.017488,359.47> |
| 3900 | | > view matrix models |
| 3901 | | > #9,-0.49256,0.49302,0.71716,357.6,-0.52447,0.48945,-0.69669,396.07,-0.69449,-0.71929,0.017488,360.07> |
| 3902 | | > view matrix models |
| 3903 | | > #9,-0.49256,0.49302,0.71716,354.2,-0.52447,0.48945,-0.69669,393.79,-0.69449,-0.71929,0.017488,359.11> |
| 3904 | | > ui mousemode right "rotate selected models"> view matrix models |
| 3905 | | > #9,0.1382,0.98029,-0.14121,345.38,0.67315,0.011612,0.73942,410.63,0.72648,-0.19724,-0.65827,353.01> |
| 3906 | | > view matrix models |
| 3907 | | > #9,0.79254,0.13893,-0.59378,348.99,0.40546,0.60723,0.68328,405.53,0.45549,-0.78228,0.42493,364.97> |
| 3908 | | > view matrix models |
| 3909 | | > #9,0.75026,-0.15287,-0.64322,350.54,0.30934,-0.77867,0.54588,413.9,-0.58431,-0.60853,-0.53692,354.24> |
| 3910 | | > view matrix models |
| 3911 | | > #9,0.71898,-0.24441,-0.65064,351.06,0.24016,-0.7911,0.56256,413.98,-0.65222,-0.56073,-0.51009,353.98> |
| 3912 | | > ui mousemode right "translate selected models"> view matrix models |
| 3913 | | > #9,0.71898,-0.24441,-0.65064,340.8,0.24016,-0.7911,0.56256,389.35,-0.65222,-0.56073,-0.51009,364.86> |
| 3914 | | > ui mousemode right "rotate selected models"> view matrix models |
| 3915 | | > #9,0.62148,-0.42664,-0.65707,341.83,-0.051117,-0.85901,0.50941,388.84,-0.78176,-0.283,-0.55566,362.32> |
| 3916 | | > view matrix models |
| 3917 | | > #9,0.5995,-0.46686,-0.65011,342.12,0.045189,-0.79122,0.60986,389.34,-0.7991,-0.39499,-0.45324,363.86> |
| 3918 | | > view matrix models |
| 3919 | | > #9,0.65675,-0.47926,-0.58222,342.84,0.073565,-0.72767,0.68197,389.52,-0.75051,-0.49072,-0.44265,364.7> |
| 3920 | | > ui mousemode right "translate selected models"> view matrix models |
| 3921 | | > #9,0.65675,-0.47926,-0.58222,344.93,0.073565,-0.72767,0.68197,386.95,-0.75051,-0.49072,-0.44265,365.94> |
| 3922 | | > ui mousemode right "rotate selected models"> view matrix models |
| 3923 | | > #9,0.66385,-0.55109,-0.50557,346.04,0.076659,-0.62231,0.77901,386.98,-0.74393,-0.5559,-0.37087,366.96> |
| 3924 | | > ui mousemode right "translate selected models"> view matrix models |
| 3925 | | > #9,0.66385,-0.55109,-0.50557,344.8,0.076659,-0.62231,0.77901,383.2,-0.74393,-0.5559,-0.37087,361.43> |
| 3926 | | > view matrix models |
| 3927 | | > #9,0.66385,-0.55109,-0.50557,344.64,0.076659,-0.62231,0.77901,381.03,-0.74393,-0.5559,-0.37087,365.37> |
| 3928 | | > view matrix models |
| 3929 | | > #9,0.66385,-0.55109,-0.50557,341.78,0.076659,-0.62231,0.77901,381.78,-0.74393,-0.5559,-0.37087,365.31> |
| 3930 | | > ui mousemode right "translate selected models"> ui mousemode right "rotate |
| 3931 | | > selected models"> view matrix models |
| 3932 | | > #9,0.60629,-0.55655,-0.56804,341.22,0.14486,-0.62505,0.76702,381.84,-0.78194,-0.54733,-0.29834,365.74> |
| 3933 | | > fitmap sel inMap #1Fit molecule AlphaFold Q9QZE5 (#9) to map postprocess.mrc |
| 3934 | | > (#1) using 2157 atoms |
| 3935 | | average map value = 0.006693, steps = 80 |
| 3936 | | shifted from previous position = 7.19 |
| 3937 | | rotated from previous position = 31.8 degrees |
| 3938 | | atoms outside contour = 1351, contour level = 0.0073912 |
| 3939 | | |
| 3940 | | Position of AlphaFold Q9QZE5 (#9) relative to postprocess.mrc (#1) |
| 3941 | | coordinates: |
| 3942 | | Matrix rotation and translation |
| 3943 | | 0.15378698 -0.84710107 -0.50869376 332.33451652 |
| 3944 | | 0.16472506 -0.48563474 0.85850135 387.36757534 |
| 3945 | | -0.97427677 -0.21582094 0.06485448 366.46545007 |
| 3946 | | Axis -0.69423497 0.30086317 0.65384950 |
| 3947 | | Axis point 0.00000000 362.73488489 220.45875682 |
| 3948 | | Rotation angle (degrees) 129.30857204 |
| 3949 | | Shift along axis 125.43964356 |
| 3950 | | |
| 3951 | | > select #9:1-6004682 atoms, 4756 bonds, 600 residues, 1 model selected |
| 3952 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 3953 | | > (#9) to map postprocess.mrc (#1) using 4682 atoms |
| 3954 | | average map value = 0.005104, steps = 84 |
| 3955 | | shifted from previous position = 16.1 |
| 3956 | | rotated from previous position = 21.6 degrees |
| 3957 | | atoms outside contour = 3452, contour level = 0.0073912 |
| 3958 | | |
| 3959 | | > volume #1 level 0.008498> ui mousemode right "rotate selected models"> view |
| 3960 | | > matrix models |
| 3961 | | > #9,0.17474,0.1346,-0.97537,320.44,0.98437,-0.046172,0.16998,369.77,-0.022157,-0.98982,-0.14056,361.17> |
| 3962 | | > fitmap sel inMap #1Fit molecule AlphaFold Q9QZE5 (#9) to map postprocess.mrc |
| 3963 | | > (#1) using 4682 atoms |
| 3964 | | average map value = 0.009126, steps = 360 |
| 3965 | | shifted from previous position = 23.3 |
| 3966 | | rotated from previous position = 15.1 degrees |
| 3967 | | atoms outside contour = 2456, contour level = 0.0084977 |
| 3968 | | |
| 3969 | | Position of AlphaFold Q9QZE5 (#9) relative to postprocess.mrc (#1) |
| 3970 | | coordinates: |
| 3971 | | Matrix rotation and translation |
| 3972 | | 0.26722214 0.11515920 -0.95672917 313.71512644 |
| 3973 | | 0.92844099 -0.29663683 0.22361556 356.10575290 |
| 3974 | | -0.25804972 -0.94802160 -0.18618645 345.95018384 |
| 3975 | | Axis -0.73772342 -0.43992476 0.51208433 |
| 3976 | | Axis point 0.00000000 236.47808024 193.71528561 |
| 3977 | | Rotation angle (degrees) 127.43063905 |
| 3978 | | Shift along axis -210.93906558 |
| 3979 | | |
| 3980 | | > view matrix models |
| 3981 | | > #9,0.62734,-0.137,-0.7666,315.51,0.62687,-0.49522,0.60149,364.62,-0.46204,-0.8579,-0.22479,346.22> |
| 3982 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 3983 | | > (#9) to map postprocess.mrc (#1) using 4682 atoms |
| 3984 | | average map value = 0.007414, steps = 200 |
| 3985 | | shifted from previous position = 10.5 |
| 3986 | | rotated from previous position = 25.5 degrees |
| 3987 | | atoms outside contour = 2906, contour level = 0.0084977 |
| 3988 | | |
| 3989 | | > view matrix models |
| 3990 | | > #9,0.62689,-0.13779,-0.76682,315.51,0.62658,-0.49578,0.60133,364.62,-0.46303,-0.85745,-0.22446,346.22> |
| 3991 | | > view matrix models |
| 3992 | | > #9,0.78502,-0.30523,-0.53905,321.04,0.40342,-0.40846,0.81879,367.89,-0.47009,-0.86023,-0.19751,346.74> |
| 3993 | | > view matrix models |
| 3994 | | > #9,0.65986,-0.47284,-0.58396,321.22,0.32015,-0.52617,0.78781,368.03,-0.67977,-0.7068,-0.19582,345.54> |
| 3995 | | > view matrix models |
| 3996 | | > #9,0.63575,-0.49645,-0.59107,321.23,0.30396,-0.54286,0.78289,368.04,-0.70953,-0.67738,-0.19422,345.35> |
| 3997 | | > ui mousemode right "translate selected models"> view matrix models |
| 3998 | | > #9,0.63575,-0.49645,-0.59107,329.03,0.30396,-0.54286,0.78289,375.62,-0.70953,-0.67738,-0.19422,346.81> |
| 3999 | | > view matrix models |
| 4000 | | > #9,0.63575,-0.49645,-0.59107,329.49,0.30396,-0.54286,0.78289,376.63,-0.70953,-0.67738,-0.19422,349.62> |
| 4001 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4002 | | > (#9) to map postprocess.mrc (#1) using 4682 atoms |
| 4003 | | average map value = 0.007466, steps = 92 |
| 4004 | | shifted from previous position = 9.33 |
| 4005 | | rotated from previous position = 13.4 degrees |
| 4006 | | atoms outside contour = 2810, contour level = 0.0084977 |
| 4007 | | |
| 4008 | | > view matrix models |
| 4009 | | > #9,0.63575,-0.49645,-0.59107,323.05,0.30396,-0.54286,0.78289,378.79,-0.70953,-0.67738,-0.19422,355.99> |
| 4010 | | > view matrix models |
| 4011 | | > #9,0.63575,-0.49645,-0.59107,325.43,0.30396,-0.54286,0.78289,382.67,-0.70953,-0.67738,-0.19422,356> |
| 4012 | | > view matrix models |
| 4013 | | > #9,0.63575,-0.49645,-0.59107,315.63,0.30396,-0.54286,0.78289,385.33,-0.70953,-0.67738,-0.19422,358.5> |
| 4014 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4015 | | > (#9) to map postprocess.mrc (#1) using 4682 atoms |
| 4016 | | average map value = 0.007414, steps = 188 |
| 4017 | | shifted from previous position = 9.6 |
| 4018 | | rotated from previous position = 19.1 degrees |
| 4019 | | atoms outside contour = 2904, contour level = 0.0084977 |
| 4020 | | |
| 4021 | | > view matrix models |
| 4022 | | > #9,0.63575,-0.49645,-0.59107,313.27,0.30396,-0.54286,0.78289,391.49,-0.70953,-0.67738,-0.19422,358.97> |
| 4023 | | > view matrix models |
| 4024 | | > #9,0.63575,-0.49645,-0.59107,313.87,0.30396,-0.54286,0.78289,390.27,-0.70953,-0.67738,-0.19422,359.2> |
| 4025 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4026 | | > (#9) to map postprocess.mrc (#1) using 4682 atoms |
| 4027 | | average map value = 0.00756, steps = 60 |
| 4028 | | shifted from previous position = 3.71 |
| 4029 | | rotated from previous position = 6.24 degrees |
| 4030 | | atoms outside contour = 2853, contour level = 0.0084977 |
| 4031 | | |
| 4032 | | > select #9:600-10002157 atoms, 2199 bonds, 275 residues, 1 model selected |
| 4033 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4034 | | > (#9) to map postprocess.mrc (#1) using 2157 atoms |
| 4035 | | average map value = 0.006694, steps = 200 |
| 4036 | | shifted from previous position = 32.1 |
| 4037 | | rotated from previous position = 35.8 degrees |
| 4038 | | atoms outside contour = 1666, contour level = 0.0084977 |
| 4039 | | |
| 4040 | | > select #9:650-10001763 atoms, 1796 bonds, 225 residues, 1 model selected |
| 4041 | | > view matrix models |
| 4042 | | > #9,0.63575,-0.49645,-0.59107,330.89,0.30396,-0.54286,0.78289,403.52,-0.70953,-0.67738,-0.19422,367.13> |
| 4043 | | > view matrix models |
| 4044 | | > #9,0.63575,-0.49645,-0.59107,339.19,0.30396,-0.54286,0.78289,407.94,-0.70953,-0.67738,-0.19422,382.25> |
| 4045 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4046 | | > (#9) to map postprocess.mrc (#1) using 1763 atoms |
| 4047 | | average map value = 0.007481, steps = 236 |
| 4048 | | shifted from previous position = 61.9 |
| 4049 | | rotated from previous position = 41.9 degrees |
| 4050 | | atoms outside contour = 966, contour level = 0.0084977 |
| 4051 | | |
| 4052 | | > ui tool show AlphaFold> close #9> alphafold match Q9QZE51 AlphaFold model |
| 4053 | | > found using UniProt identifier: Q9QZE5 (UniProt Q9QZE5) |
| 4054 | | | Sequence Similarity |
| 4055 | | --- |
| 4056 | | AlphaFold Model| Query Sequence| Identity %| Coverage % |
| 4057 | | Q9QZE5 | Q9QZE5 | 100.0 | 100.0 |
| 4058 | | Opened 1 AlphaFold model |
| 4059 | | > hide #9 models> show #9 models> select add #96830 atoms, 6947 bonds, 874 |
| 4060 | | > residues, 1 model selected |
| 4061 | | > view matrix models #9,1,0,0,231.53,0,1,0,352.98,0,0,1,252.26> view matrix |
| 4062 | | > models #9,1,0,0,225.37,0,1,0,330.91,0,0,1,352.68> view matrix models |
| 4063 | | > #9,1,0,0,329.42,0,1,0,337.51,0,0,1,364.07> ui mousemode right "rotate |
| 4064 | | > selected models"> view matrix models |
| 4065 | | > #9,0.5106,0.057525,0.85789,334.74,-0.81647,-0.28037,0.50474,348.72,0.26957,-0.95817,-0.096191,362.72> |
| 4066 | | > view matrix models |
| 4067 | | > #9,-0.33935,0.87755,-0.33875,318.06,-0.86466,-0.14919,0.47969,347.52,0.37041,0.45569,0.80941,360.15> |
| 4068 | | > view matrix models |
| 4069 | | > #9,0.93235,0.086502,-0.35105,325.96,0.2537,0.53526,0.80569,347.5,0.2576,-0.84025,0.47711,366.34> |
| 4070 | | > view matrix models |
| 4071 | | > #9,0.92134,-0.081696,-0.38007,326.88,0.35814,-0.20192,0.91157,353.65,-0.15122,-0.97599,-0.15678,361.55> |
| 4072 | | > view matrix models |
| 4073 | | > #9,0.91582,-0.11413,-0.38503,327.05,0.33247,-0.32231,0.88633,354.24,-0.22525,-0.93973,-0.25723,360.37> |
| 4074 | | > fitmap sel inMap #1Fit molecule AlphaFold Q9QZE5 (#9) to map postprocess.mrc |
| 4075 | | > (#1) using 6830 atoms |
| 4076 | | average map value = 0.006137, steps = 92 |
| 4077 | | shifted from previous position = 17.1 |
| 4078 | | rotated from previous position = 10.5 degrees |
| 4079 | | atoms outside contour = 4797, contour level = 0.0084977 |
| 4080 | | |
| 4081 | | Position of AlphaFold Q9QZE5 (#9) relative to postprocess.mrc (#1) |
| 4082 | | coordinates: |
| 4083 | | Matrix rotation and translation |
| 4084 | | 0.87097484 -0.15840588 -0.46509182 332.36931951 |
| 4085 | | 0.43604691 -0.18701388 0.88027774 345.85308003 |
| 4086 | | -0.22641979 -0.96950162 -0.09381199 347.41581981 |
| 4087 | | Axis -0.94494368 -0.12192353 0.30367103 |
| 4088 | | Axis point 0.00000000 333.53825216 91.59869353 |
| 4089 | | Rotation angle (degrees) 101.82513874 |
| 4090 | | Shift along axis -250.73779687 |
| 4091 | | |
| 4092 | | > view matrix models |
| 4093 | | > #9,0.85722,-0.25265,-0.44871,333.12,0.38273,-0.2704,0.88341,346.35,-0.34453,-0.929,-0.13509,346.58> |
| 4094 | | > view matrix models |
| 4095 | | > #9,0.86448,-0.2189,-0.4525,332.87,0.40922,-0.21628,0.88643,346.05,-0.29191,-0.95147,-0.097393,347.13> |
| 4096 | | > view matrix models |
| 4097 | | > #9,0.36729,0.024632,-0.92978,326.49,0.74423,-0.60736,0.27791,344.69,-0.55786,-0.79405,-0.24141,344.4> |
| 4098 | | > ui mousemode right "translate selected models"> view matrix models |
| 4099 | | > #9,0.36729,0.024632,-0.92978,320.35,0.74423,-0.60736,0.27791,367.07,-0.55786,-0.79405,-0.24141,335.26> |
| 4100 | | > view matrix models |
| 4101 | | > #9,0.36729,0.024632,-0.92978,319.34,0.74423,-0.60736,0.27791,374.59,-0.55786,-0.79405,-0.24141,351.05> |
| 4102 | | > view matrix models |
| 4103 | | > #9,0.36729,0.024632,-0.92978,318.31,0.74423,-0.60736,0.27791,364.69,-0.55786,-0.79405,-0.24141,353.03> |
| 4104 | | > ui mousemode right "rotate selected models"> view matrix models |
| 4105 | | > #9,0.39074,0.007604,-0.92047,318.55,0.79623,-0.50455,0.33383,364.51,-0.46189,-0.86335,-0.2032,354> |
| 4106 | | > ui mousemode right "translate selected models"> view matrix models |
| 4107 | | > #9,0.39074,0.007604,-0.92047,319.03,0.79623,-0.50455,0.33383,361.58,-0.46189,-0.86335,-0.2032,354.38> |
| 4108 | | > fitmap sel inMap #1Fit molecule AlphaFold Q9QZE5 (#9) to map postprocess.mrc |
| 4109 | | > (#1) using 6830 atoms |
| 4110 | | average map value = 0.006748, steps = 124 |
| 4111 | | shifted from previous position = 5.03 |
| 4112 | | rotated from previous position = 19.9 degrees |
| 4113 | | atoms outside contour = 4536, contour level = 0.0084977 |
| 4114 | | |
| 4115 | | Position of AlphaFold Q9QZE5 (#9) relative to postprocess.mrc (#1) |
| 4116 | | coordinates: |
| 4117 | | Matrix rotation and translation |
| 4118 | | 0.52415675 -0.03555277 -0.85087937 323.94798716 |
| 4119 | | 0.82736390 -0.21551011 0.51867559 361.60820896 |
| 4120 | | -0.20181346 -0.97585418 -0.08354600 353.04415803 |
| 4121 | | Axis -0.81057848 -0.35202969 0.46801455 |
| 4122 | | Axis point 0.00000000 298.25200642 154.24747069 |
| 4123 | | Rotation angle (degrees) 112.79590387 |
| 4124 | | Shift along axis -224.65229079 |
| 4125 | | |
| 4126 | | > view matrix models |
| 4127 | | > #9,0.52416,-0.035553,-0.85088,323.62,0.82736,-0.21551,0.51868,361.48,-0.20181,-0.97585,-0.083546,354.84> |
| 4128 | | > ui mousemode right "move picked models"> ui mousemode right "rotate selected |
| 4129 | | > models"> view matrix models |
| 4130 | | > #9,0.47843,-0.20219,-0.85453,324.65,0.80053,-0.29954,0.51907,362.01,-0.36091,-0.93241,0.01855,355.02> |
| 4131 | | > select #700-1000Nothing selected |
| 4132 | | > select #9:700-10001362 atoms, 1385 bonds, 175 residues, 1 model selected |
| 4133 | | > hide #!1 models> select clear> select #9/A:6065 atoms, 4 bonds, 1 residue, 1 |
| 4134 | | > model selected |
| 4135 | | > select #9:600-10002157 atoms, 2199 bonds, 275 residues, 1 model selected |
| 4136 | | > select #9:604-10002123 atoms, 2164 bonds, 271 residues, 1 model selected |
| 4137 | | > select #9/A:5847 atoms, 6 bonds, 1 residue, 1 model selected |
| 4138 | | > select #9:1-5844566 atoms, 4638 bonds, 584 residues, 1 model selected |
| 4139 | | > fitmap sel inMap #1Fit molecule AlphaFold Q9QZE5 (#9) to map postprocess.mrc |
| 4140 | | > (#1) using 4566 atoms |
| 4141 | | average map value = 0.009351, steps = 92 |
| 4142 | | shifted from previous position = 4.38 |
| 4143 | | rotated from previous position = 3.89 degrees |
| 4144 | | atoms outside contour = 2341, contour level = 0.0084977 |
| 4145 | | |
| 4146 | | Position of AlphaFold Q9QZE5 (#9) relative to postprocess.mrc (#1) |
| 4147 | | coordinates: |
| 4148 | | Matrix rotation and translation |
| 4149 | | 0.45889906 -0.18486325 -0.86904386 327.45356541 |
| 4150 | | 0.79055463 -0.36145506 0.49434160 364.85244362 |
| 4151 | | -0.40550589 -0.91387954 -0.01972689 357.01911347 |
| 4152 | | Axis -0.79351902 -0.26119917 0.54963856 |
| 4153 | | Axis point 0.00000000 298.56869237 168.18761450 |
| 4154 | | Rotation angle (degrees) 117.46078746 |
| 4155 | | Shift along axis -158.90831637 |
| 4156 | | |
| 4157 | | > show #!1 models> ui mousemode right "rotate selected models"> view matrix |
| 4158 | | > models |
| 4159 | | > #9,0.27309,-0.67152,-0.68882,331.87,0.59697,-0.44319,0.66874,366.4,-0.75435,-0.59384,0.27985,356.44> |
| 4160 | | > view matrix models |
| 4161 | | > #9,0.8063,-0.1175,-0.57972,329.92,0.17462,-0.88911,0.42307,366.75,-0.56515,-0.44235,-0.69637,348.17> |
| 4162 | | > view matrix models |
| 4163 | | > #9,0.75803,-0.21289,-0.61649,330.2,0.39103,-0.60816,0.69082,367.31,-0.522,-0.76473,-0.37776,352.97> |
| 4164 | | > ui mousemode right "translate selected models"> view matrix models |
| 4165 | | > #9,0.75803,-0.21289,-0.61649,354.81,0.39103,-0.60816,0.69082,381.91,-0.522,-0.76473,-0.37776,346.1> |
| 4166 | | > view matrix models |
| 4167 | | > #9,0.75803,-0.21289,-0.61649,354.95,0.39103,-0.60816,0.69082,384.47,-0.522,-0.76473,-0.37776,355.72> |
| 4168 | | > select #9:604-10002123 atoms, 2164 bonds, 271 residues, 1 model selected |
| 4169 | | > fitmap sel inMap #1Fit molecule AlphaFold Q9QZE5 (#9) to map postprocess.mrc |
| 4170 | | > (#1) using 2123 atoms |
| 4171 | | average map value = 0.006782, steps = 112 |
| 4172 | | shifted from previous position = 1.97 |
| 4173 | | rotated from previous position = 52.8 degrees |
| 4174 | | atoms outside contour = 1633, contour level = 0.0084977 |
| 4175 | | |
| 4176 | | Position of AlphaFold Q9QZE5 (#9) relative to postprocess.mrc (#1) |
| 4177 | | coordinates: |
| 4178 | | Matrix rotation and translation |
| 4179 | | 0.15078311 -0.84758859 -0.50878093 332.31596289 |
| 4180 | | 0.16314294 -0.48627331 0.85844199 387.32606835 |
| 4181 | | -0.97501222 -0.21244257 0.06495629 366.55082693 |
| 4182 | | Axis -0.69331528 0.30184886 0.65437083 |
| 4183 | | Axis point 0.00000000 362.68162268 221.17266955 |
| 4184 | | Rotation angle (degrees) 129.43978685 |
| 4185 | | Shift along axis 126.37436574 |
| 4186 | | |
| 4187 | | > view matrix models |
| 4188 | | > #9,0.15078,-0.84759,-0.50878,327.58,0.16314,-0.48627,0.85844,381.92,-0.97501,-0.21244,0.064956,363.32> |
| 4189 | | > ui mousemode right "rotate selected models"> view matrix models |
| 4190 | | > #9,0.54718,0.18399,-0.81654,318.8,0.83443,-0.043237,0.54942,377.76,0.065782,-0.98198,-0.17718,368.82> |
| 4191 | | > ui mousemode right "translate selected models"> view matrix models |
| 4192 | | > #9,0.54718,0.18399,-0.81654,321.53,0.83443,-0.043237,0.54942,375.98,0.065782,-0.98198,-0.17718,369.73> |
| 4193 | | > view matrix models |
| 4194 | | > #9,0.54718,0.18399,-0.81654,329.13,0.83443,-0.043237,0.54942,373.65,0.065782,-0.98198,-0.17718,370.98> |
| 4195 | | > view matrix models |
| 4196 | | > #9,0.54718,0.18399,-0.81654,326.81,0.83443,-0.043237,0.54942,371.45,0.065782,-0.98198,-0.17718,357.23> |
| 4197 | | > ui mousemode right "rotate selected models"> view matrix models |
| 4198 | | > #9,0.76141,-0.019108,-0.64799,329.95,0.60429,0.38283,0.69877,369.21,0.23472,-0.92362,0.30303,360.89> |
| 4199 | | > view matrix models |
| 4200 | | > #9,0.72763,-0.47084,-0.49887,334.18,0.56532,-0.00033507,0.82487,372.77,-0.38855,-0.88222,0.26593,359.09> |
| 4201 | | > view matrix models |
| 4202 | | > #9,0.53548,-0.47674,-0.69712,332.3,0.83644,0.41349,0.35972,366.81,0.11676,-0.77572,0.62018,362.1> |
| 4203 | | > view matrix models |
| 4204 | | > #9,0.55976,-0.55016,-0.61967,333.46,0.74824,0.014216,0.66328,371.77,-0.3561,-0.83494,0.41961,360.03> |
| 4205 | | > view matrix models |
| 4206 | | > #9,0.0083414,-0.40427,-0.9146,329.07,0.92123,-0.35263,0.16427,370.78,-0.38893,-0.84393,0.36948,359.63> |
| 4207 | | > select #9:200-5843015 atoms, 3063 bonds, 385 residues, 1 model selected |
| 4208 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4209 | | > (#9) to map postprocess.mrc (#1) using 3015 atoms |
| 4210 | | average map value = 0.008169, steps = 140 |
| 4211 | | shifted from previous position = 9.02 |
| 4212 | | rotated from previous position = 13.4 degrees |
| 4213 | | atoms outside contour = 1695, contour level = 0.0084977 |
| 4214 | | |
| 4215 | | > ui mousemode right "translate selected models"> view matrix models |
| 4216 | | > #9,0.0083414,-0.40427,-0.9146,333.28,0.92123,-0.35263,0.16427,381.87,-0.38893,-0.84393,0.36948,365.25> |
| 4217 | | > select #9:100-5843782 atoms, 3840 bonds, 485 residues, 1 model selected |
| 4218 | | > select #9:1-5844566 atoms, 4638 bonds, 584 residues, 1 model selected |
| 4219 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4220 | | > (#9) to map postprocess.mrc (#1) using 4566 atoms |
| 4221 | | average map value = 0.007329, steps = 144 |
| 4222 | | shifted from previous position = 12.3 |
| 4223 | | rotated from previous position = 12.3 degrees |
| 4224 | | atoms outside contour = 2829, contour level = 0.0084977 |
| 4225 | | |
| 4226 | | > view matrix models |
| 4227 | | > #9,0.0083414,-0.40427,-0.9146,337.17,0.92123,-0.35263,0.16427,385.88,-0.38893,-0.84393,0.36948,365.25> |
| 4228 | | > ui mousemode right "rotate selected models"> view matrix models |
| 4229 | | > #9,0.20778,-0.49673,-0.84267,341.14,0.74791,-0.47455,0.46415,385.68,-0.63045,-0.72667,0.27291,360.36> |
| 4230 | | > view matrix models |
| 4231 | | > #9,0.23996,-0.52672,-0.81546,341.97,0.70114,-0.48694,0.52085,385.34,-0.67143,-0.69674,0.25246,359.43> |
| 4232 | | > view matrix models |
| 4233 | | > #9,0.25585,-0.4691,-0.84527,341.57,0.62735,-0.58469,0.51437,385.12,-0.73551,-0.66188,0.1447,357.76> |
| 4234 | | > ui mousemode right "translate selected models"> view matrix models |
| 4235 | | > #9,0.25585,-0.4691,-0.84527,337.8,0.62735,-0.58469,0.51437,382.88,-0.73551,-0.66188,0.1447,357.91> |
| 4236 | | > view matrix models |
| 4237 | | > #9,0.25585,-0.4691,-0.84527,339.82,0.62735,-0.58469,0.51437,387.09,-0.73551,-0.66188,0.1447,364> |
| 4238 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4239 | | > (#9) to map postprocess.mrc (#1) using 4566 atoms |
| 4240 | | average map value = 0.008131, steps = 152 |
| 4241 | | shifted from previous position = 13.4 |
| 4242 | | rotated from previous position = 38 degrees |
| 4243 | | atoms outside contour = 2572, contour level = 0.0084977 |
| 4244 | | |
| 4245 | | > select #9:604-10002123 atoms, 2164 bonds, 271 residues, 1 model selected |
| 4246 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4247 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4248 | | average map value = 0.006367, steps = 68 |
| 4249 | | shifted from previous position = 11.5 |
| 4250 | | rotated from previous position = 16.1 degrees |
| 4251 | | atoms outside contour = 1630, contour level = 0.0084977 |
| 4252 | | |
| 4253 | | > view matrix models |
| 4254 | | > #9,0.25585,-0.4691,-0.84527,337.41,0.62735,-0.58469,0.51437,389.41,-0.73551,-0.66188,0.1447,361.76> |
| 4255 | | > ui mousemode right "translate selected models"> ui mousemode right "rotate |
| 4256 | | > selected models"> view matrix models |
| 4257 | | > #9,0.37394,-0.55141,-0.74574,340.64,0.50685,-0.55188,0.66222,389.38,-0.77671,-0.6256,0.07311,360.15> |
| 4258 | | > view matrix models |
| 4259 | | > #9,0.50566,-0.50901,-0.69657,342.02,0.42662,-0.55425,0.71471,389.15,-0.74987,-0.65857,-0.063104,359.35> |
| 4260 | | > ui mousemode right "translate selected models"> view matrix models |
| 4261 | | > #9,0.50566,-0.50901,-0.69657,337.55,0.42662,-0.55425,0.71471,394.21,-0.74987,-0.65857,-0.063104,358.41> |
| 4262 | | > view matrix models |
| 4263 | | > #9,0.50566,-0.50901,-0.69657,332.42,0.42662,-0.55425,0.71471,391.34,-0.74987,-0.65857,-0.063104,366.24> |
| 4264 | | > view matrix models |
| 4265 | | > #9,0.50566,-0.50901,-0.69657,331.23,0.42662,-0.55425,0.71471,391.93,-0.74987,-0.65857,-0.063104,365.89> |
| 4266 | | > view matrix models |
| 4267 | | > #9,0.50566,-0.50901,-0.69657,327.26,0.42662,-0.55425,0.71471,391.64,-0.74987,-0.65857,-0.063104,369.02> |
| 4268 | | > view matrix models |
| 4269 | | > #9,0.50566,-0.50901,-0.69657,335.89,0.42662,-0.55425,0.71471,386.47,-0.74987,-0.65857,-0.063104,367.12> |
| 4270 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4271 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4272 | | average map value = 0.006782, steps = 92 |
| 4273 | | shifted from previous position = 2.19 |
| 4274 | | rotated from previous position = 27.9 degrees |
| 4275 | | atoms outside contour = 1633, contour level = 0.0084977 |
| 4276 | | |
| 4277 | | > select #9:1-5844566 atoms, 4638 bonds, 584 residues, 1 model selected |
| 4278 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4279 | | > (#9) to map postprocess.mrc (#1) using 4566 atoms |
| 4280 | | average map value = 0.008365, steps = 116 |
| 4281 | | shifted from previous position = 8.23 |
| 4282 | | rotated from previous position = 5.89 degrees |
| 4283 | | atoms outside contour = 2673, contour level = 0.0084977 |
| 4284 | | |
| 4285 | | > view matrix models |
| 4286 | | > #9,0.50566,-0.50901,-0.69657,339.01,0.42662,-0.55425,0.71471,386.18,-0.74987,-0.65857,-0.063104,369> |
| 4287 | | > ui mousemode right "rotate selected models"> view matrix models |
| 4288 | | > #9,0.22416,-0.41869,-0.88003,332.38,0.40267,-0.78253,0.47487,384.8,-0.88747,-0.46081,-0.006816,366.29> |
| 4289 | | > view matrix models |
| 4290 | | > #9,0.24958,-0.44213,-0.86153,333.19,0.32071,-0.80173,0.50435,384.73,-0.9137,-0.40218,-0.0583,364.53> |
| 4291 | | > ui mousemode right "translate selected models"> view matrix models |
| 4292 | | > #9,0.24958,-0.44213,-0.86153,333.63,0.32071,-0.80173,0.50435,390.91,-0.9137,-0.40218,-0.0583,360.75> |
| 4293 | | > view matrix models |
| 4294 | | > #9,0.24958,-0.44213,-0.86153,336.43,0.32071,-0.80173,0.50435,393.51,-0.9137,-0.40218,-0.0583,360.3> |
| 4295 | | > ui mousemode right "rotate selected models"> view matrix models |
| 4296 | | > #9,0.31985,-0.55665,-0.7667,339.96,0.27095,-0.72168,0.637,394.23,-0.9079,-0.41148,-0.080006,360.12> |
| 4297 | | > view matrix models |
| 4298 | | > #9,0.43339,-0.40851,-0.8033,338.69,0.3922,-0.71703,0.57623,394.33,-0.81139,-0.56479,-0.15054,361.7> |
| 4299 | | > ui mousemode right "translate selected models"> view matrix models |
| 4300 | | > #9,0.43339,-0.40851,-0.8033,346.01,0.3922,-0.71703,0.57623,392.04,-0.81139,-0.56479,-0.15054,363.41> |
| 4301 | | > view matrix models |
| 4302 | | > #9,0.43339,-0.40851,-0.8033,335.77,0.3922,-0.71703,0.57623,392.97,-0.81139,-0.56479,-0.15054,363.27> |
| 4303 | | > ui mousemode right "rotate selected models"> view matrix models |
| 4304 | | > #9,0.37526,-0.44115,-0.81521,335.42,0.6563,-0.49461,0.56976,392.72,-0.65456,-0.74883,0.10392,370.98> |
| 4305 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4306 | | > (#9) to map postprocess.mrc (#1) using 4566 atoms |
| 4307 | | average map value = 0.00813, steps = 76 |
| 4308 | | shifted from previous position = 1.91 |
| 4309 | | rotated from previous position = 7.21 degrees |
| 4310 | | atoms outside contour = 2567, contour level = 0.0084977 |
| 4311 | | |
| 4312 | | > view matrix models |
| 4313 | | > #9,0.2927,-0.47966,-0.8272,335.05,0.66586,-0.51862,0.53634,392.59,-0.68627,-0.70778,0.16759,371.17> |
| 4314 | | > show #3 models> hide #3 models> show #3 models> hide #!1 models> select |
| 4315 | | > #9:1-2091643 atoms, 1668 bonds, 209 residues, 1 model selected |
| 4316 | | > select #9:1-2081635 atoms, 1660 bonds, 208 residues, 1 model selected |
| 4317 | | > select #9:1-2071624 atoms, 1649 bonds, 207 residues, 1 model selected |
| 4318 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4319 | | > (#9) to map postprocess.mrc (#1) using 1624 atoms |
| 4320 | | average map value = 0.008311, steps = 68 |
| 4321 | | shifted from previous position = 13.5 |
| 4322 | | rotated from previous position = 13.2 degrees |
| 4323 | | atoms outside contour = 930, contour level = 0.0084977 |
| 4324 | | |
| 4325 | | > show #!1 models> view matrix models |
| 4326 | | > #9,0.35607,-0.49822,-0.79056,336.8,0.55476,-0.56809,0.60788,393.08,-0.75197,-0.65502,0.074109,367.89> |
| 4327 | | > view matrix models |
| 4328 | | > #9,0.14729,-0.48794,-0.86036,332.65,0.48246,-0.72391,0.49315,392.3,-0.86345,-0.48772,0.12879,365> |
| 4329 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4330 | | > (#9) to map postprocess.mrc (#1) using 1624 atoms |
| 4331 | | average map value = 0.01134, steps = 76 |
| 4332 | | shifted from previous position = 5.66 |
| 4333 | | rotated from previous position = 32 degrees |
| 4334 | | atoms outside contour = 679, contour level = 0.0084977 |
| 4335 | | |
| 4336 | | > select #9:207-5842950 atoms, 2996 bonds, 378 residues, 1 model selected |
| 4337 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4338 | | > (#9) to map postprocess.mrc (#1) using 2950 atoms |
| 4339 | | average map value = 0.008193, steps = 124 |
| 4340 | | shifted from previous position = 2.41 |
| 4341 | | rotated from previous position = 15.8 degrees |
| 4342 | | atoms outside contour = 1654, contour level = 0.0084977 |
| 4343 | | |
| 4344 | | > hide #3 models> show #3 models> hide #3 models> show #4 models> hide #4 |
| 4345 | | > models> show #5 models> select #9:604-10002123 atoms, 2164 bonds, 271 |
| 4346 | | > residues, 1 model selected |
| 4347 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4348 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4349 | | average map value = 0.006678, steps = 252 |
| 4350 | | shifted from previous position = 22.8 |
| 4351 | | rotated from previous position = 49.8 degrees |
| 4352 | | atoms outside contour = 1532, contour level = 0.0084977 |
| 4353 | | |
| 4354 | | > view matrix models |
| 4355 | | > #9,0.39618,-0.42708,-0.8128,335.98,0.61508,-0.5338,0.58029,392.99,-0.6817,-0.72983,0.051211,369.42> |
| 4356 | | > view matrix models |
| 4357 | | > #9,0.53629,-0.34548,-0.77009,337.47,0.63827,-0.431,0.63784,393.01,-0.55227,-0.8336,-0.010633,371.25> |
| 4358 | | > view matrix models |
| 4359 | | > #9,0.89018,-0.24614,-0.3834,350.05,0.24658,-0.44732,0.85971,393.92,-0.38312,-0.85983,-0.3375,365.58> |
| 4360 | | > ui mousemode right "translate selected models"> view matrix models |
| 4361 | | > #9,0.89018,-0.24614,-0.3834,333.92,0.24658,-0.44732,0.85971,407.27,-0.38312,-0.85983,-0.3375,369.07> |
| 4362 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4363 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4364 | | average map value = 0.006524, steps = 152 |
| 4365 | | shifted from previous position = 21.2 |
| 4366 | | rotated from previous position = 21.5 degrees |
| 4367 | | atoms outside contour = 1547, contour level = 0.0084977 |
| 4368 | | |
| 4369 | | > view matrix models |
| 4370 | | > #9,0.89018,-0.24614,-0.3834,332.42,0.24658,-0.44732,0.85971,419.6,-0.38312,-0.85983,-0.3375,374.46> |
| 4371 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4372 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4373 | | average map value = 0.006524, steps = 84 |
| 4374 | | shifted from previous position = 13.5 |
| 4375 | | rotated from previous position = 0.0285 degrees |
| 4376 | | atoms outside contour = 1545, contour level = 0.0084977 |
| 4377 | | |
| 4378 | | > view matrix models |
| 4379 | | > #9,0.89018,-0.24614,-0.3834,333.86,0.24658,-0.44732,0.85971,420.55,-0.38312,-0.85983,-0.3375,377.8> |
| 4380 | | > view matrix models |
| 4381 | | > #9,0.89018,-0.24614,-0.3834,325.62,0.24658,-0.44732,0.85971,416.49,-0.38312,-0.85983,-0.3375,373.58> |
| 4382 | | > view matrix models |
| 4383 | | > #9,0.89018,-0.24614,-0.3834,319.54,0.24658,-0.44732,0.85971,419.01,-0.38312,-0.85983,-0.3375,374.13> |
| 4384 | | > ui mousemode right "rotate selected models"> view matrix models |
| 4385 | | > #9,0.91854,-0.22913,0.32216,337.12,-0.39532,-0.5259,0.7531,414.21,-0.0031295,-0.81911,-0.57363,369.55> |
| 4386 | | > ui mousemode right "translate selected models"> view matrix models |
| 4387 | | > #9,0.91854,-0.22913,0.32216,335.77,-0.39532,-0.5259,0.7531,425.61,-0.0031295,-0.81911,-0.57363,376.01> |
| 4388 | | > view matrix models |
| 4389 | | > #9,0.91854,-0.22913,0.32216,343.46,-0.39532,-0.5259,0.7531,420.62,-0.0031295,-0.81911,-0.57363,379.5> |
| 4390 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4391 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4392 | | average map value = 0.006781, steps = 132 |
| 4393 | | shifted from previous position = 15.9 |
| 4394 | | rotated from previous position = 55.5 degrees |
| 4395 | | atoms outside contour = 1631, contour level = 0.0084977 |
| 4396 | | |
| 4397 | | > view matrix models |
| 4398 | | > #9,0.91854,-0.22913,0.32216,341.75,-0.39532,-0.5259,0.7531,415.68,-0.0031295,-0.81911,-0.57363,376.32> |
| 4399 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4400 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4401 | | average map value = 0.006781, steps = 72 |
| 4402 | | shifted from previous position = 6.12 |
| 4403 | | rotated from previous position = 0.0154 degrees |
| 4404 | | atoms outside contour = 1631, contour level = 0.0084977 |
| 4405 | | |
| 4406 | | > view matrix models |
| 4407 | | > #9,0.91854,-0.22913,0.32216,341.47,-0.39532,-0.5259,0.7531,410.17,-0.0031295,-0.81911,-0.57363,373.68> |
| 4408 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4409 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4410 | | average map value = 0.006781, steps = 100 |
| 4411 | | shifted from previous position = 6.12 |
| 4412 | | rotated from previous position = 0.0323 degrees |
| 4413 | | atoms outside contour = 1633, contour level = 0.0084977 |
| 4414 | | |
| 4415 | | > view matrix models |
| 4416 | | > #9,0.91854,-0.22913,0.32216,341.43,-0.39532,-0.5259,0.7531,407.42,-0.0031295,-0.81911,-0.57363,369.93> |
| 4417 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4418 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4419 | | average map value = 0.006782, steps = 68 |
| 4420 | | shifted from previous position = 4.65 |
| 4421 | | rotated from previous position = 0.0387 degrees |
| 4422 | | atoms outside contour = 1633, contour level = 0.0084977 |
| 4423 | | |
| 4424 | | > view matrix models |
| 4425 | | > #9,0.91854,-0.22913,0.32216,343.31,-0.39532,-0.5259,0.7531,403.91,-0.0031295,-0.81911,-0.57363,365.44> |
| 4426 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4427 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4428 | | average map value = 0.006781, steps = 80 |
| 4429 | | shifted from previous position = 6.01 |
| 4430 | | rotated from previous position = 0.0278 degrees |
| 4431 | | atoms outside contour = 1633, contour level = 0.0084977 |
| 4432 | | |
| 4433 | | > view matrix models |
| 4434 | | > #9,0.91854,-0.22913,0.32216,344.72,-0.39532,-0.5259,0.7531,402.05,-0.0031295,-0.81911,-0.57363,363.13> |
| 4435 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4436 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4437 | | average map value = 0.006782, steps = 68 |
| 4438 | | shifted from previous position = 3.25 |
| 4439 | | rotated from previous position = 0.056 degrees |
| 4440 | | atoms outside contour = 1632, contour level = 0.0084977 |
| 4441 | | |
| 4442 | | > ui mousemode right "rotate selected models"> view matrix models |
| 4443 | | > #9,0.92735,-0.26644,0.26275,343.88,-0.36008,-0.44427,0.82034,402.72,-0.10184,-0.85535,-0.50794,364.63> |
| 4444 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4445 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4446 | | average map value = 0.006781, steps = 84 |
| 4447 | | shifted from previous position = 1.14 |
| 4448 | | rotated from previous position = 7.3 degrees |
| 4449 | | atoms outside contour = 1631, contour level = 0.0084977 |
| 4450 | | |
| 4451 | | > view matrix models |
| 4452 | | > #9,0.97653,-0.15522,0.14932,339.6,-0.20792,-0.4985,0.84159,405.33,-0.056194,-0.85288,-0.51907,364.67> |
| 4453 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4454 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4455 | | average map value = 0.006781, steps = 76 |
| 4456 | | shifted from previous position = 6.06 |
| 4457 | | rotated from previous position = 9.62 degrees |
| 4458 | | atoms outside contour = 1633, contour level = 0.0084977 |
| 4459 | | |
| 4460 | | > view matrix models |
| 4461 | | > #9,0.99388,-0.080233,0.075903,336.64,-0.10681,-0.52344,0.84534,406.58,-0.028093,-0.84828,-0.52881,364.55> |
| 4462 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4463 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4464 | | average map value = 0.006781, steps = 56 |
| 4465 | | shifted from previous position = 3.86 |
| 4466 | | rotated from previous position = 6.17 degrees |
| 4467 | | atoms outside contour = 1633, contour level = 0.0084977 |
| 4468 | | |
| 4469 | | > view matrix models |
| 4470 | | > #9,0.99952,0.022525,-0.021198,332.52,0.030046,-0.54429,0.83836,407.73,0.0073465,-0.83859,-0.54471,364.24> |
| 4471 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4472 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4473 | | average map value = 0.006782, steps = 60 |
| 4474 | | shifted from previous position = 5.15 |
| 4475 | | rotated from previous position = 8.19 degrees |
| 4476 | | atoms outside contour = 1633, contour level = 0.0084977 |
| 4477 | | |
| 4478 | | > view matrix models |
| 4479 | | > #9,0.99035,-0.035866,-0.13386,330.63,0.11068,-0.37661,0.91974,407.45,-0.083402,-0.92568,-0.36901,369.54> |
| 4480 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4481 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4482 | | average map value = 0.006782, steps = 76 |
| 4483 | | shifted from previous position = 1.82 |
| 4484 | | rotated from previous position = 13.1 degrees |
| 4485 | | atoms outside contour = 1632, contour level = 0.0084977 |
| 4486 | | |
| 4487 | | > view matrix models |
| 4488 | | > #9,0.94532,-0.16382,-0.28201,328.87,0.25469,-0.16932,0.95209,405.63,-0.20372,-0.97185,-0.11834,375.75> |
| 4489 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4490 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4491 | | average map value = 0.006677, steps = 240 |
| 4492 | | shifted from previous position = 15 |
| 4493 | | rotated from previous position = 38.8 degrees |
| 4494 | | atoms outside contour = 1532, contour level = 0.0084977 |
| 4495 | | |
| 4496 | | > view matrix models |
| 4497 | | > #9,0.94236,-0.32127,-0.093519,337.1,0.060473,-0.11136,0.99194,404.36,-0.3291,-0.94042,-0.085515,375.25> |
| 4498 | | > view matrix models |
| 4499 | | > #9,0.93747,-0.33175,-0.10527,337.01,0.042417,-0.1913,0.98061,405.75,-0.34546,-0.92377,-0.16527,372.78> |
| 4500 | | > view matrix models |
| 4501 | | > #9,0.95322,-0.29687,-0.056938,337.54,-0.071279,-0.4038,0.91207,408.15,-0.29375,-0.86534,-0.40607,365.67> |
| 4502 | | > ui mousemode right "translate selected models"> view matrix models |
| 4503 | | > #9,0.95322,-0.29687,-0.056938,329.08,-0.071279,-0.4038,0.91207,419.73,-0.29375,-0.86534,-0.40607,375.26> |
| 4504 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4505 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4506 | | average map value = 0.006877, steps = 428 |
| 4507 | | shifted from previous position = 11.8 |
| 4508 | | rotated from previous position = 55.7 degrees |
| 4509 | | atoms outside contour = 1494, contour level = 0.0084977 |
| 4510 | | |
| 4511 | | > view matrix models |
| 4512 | | > #9,0.95322,-0.29687,-0.056938,327.92,-0.071279,-0.4038,0.91207,433.19,-0.29375,-0.86534,-0.40607,379.22> |
| 4513 | | > ui mousemode right "translate selected models"> ui mousemode right "rotate |
| 4514 | | > selected models"> view matrix models |
| 4515 | | > #9,0.51667,0.50061,0.69458,326.51,-0.2772,-0.66975,0.68891,434.44,0.81007,-0.54848,-0.20727,375.84> |
| 4516 | | > view matrix models |
| 4517 | | > #9,0.01178,0.71085,0.70325,321.44,-0.4121,-0.63734,0.65113,432.68,0.91106,-0.29748,0.28543,381.81> |
| 4518 | | > ui mousemode right "translate selected models"> view matrix models |
| 4519 | | > #9,0.01178,0.71085,0.70325,341.14,-0.4121,-0.63734,0.65113,445.68,0.91106,-0.29748,0.28543,394.39> |
| 4520 | | > view matrix models |
| 4521 | | > #9,0.01178,0.71085,0.70325,342.19,-0.4121,-0.63734,0.65113,443.06,0.91106,-0.29748,0.28543,362.02> |
| 4522 | | > view matrix models |
| 4523 | | > #9,0.01178,0.71085,0.70325,349.39,-0.4121,-0.63734,0.65113,450.8,0.91106,-0.29748,0.28543,367.93> |
| 4524 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4525 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4526 | | average map value = 0.006781, steps = 96 |
| 4527 | | shifted from previous position = 23.4 |
| 4528 | | rotated from previous position = 40.4 degrees |
| 4529 | | atoms outside contour = 1633, contour level = 0.0084977 |
| 4530 | | |
| 4531 | | > ui mousemode right "rotate selected models"> view matrix models |
| 4532 | | > #9,0.052452,0.77204,0.63341,345.79,-0.42817,-0.55564,0.7127,449.9,0.90218,-0.30859,0.30141,368.66> |
| 4533 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4534 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4535 | | average map value = 0.006782, steps = 88 |
| 4536 | | shifted from previous position = 2.07 |
| 4537 | | rotated from previous position = 5.98 degrees |
| 4538 | | atoms outside contour = 1633, contour level = 0.0084977 |
| 4539 | | |
| 4540 | | > view matrix models |
| 4541 | | > #9,0.10222,0.78283,0.61379,345,-0.43696,-0.51897,0.73467,449.4,0.89365,-0.3433,0.28902,369.35> |
| 4542 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4543 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4544 | | average map value = 0.006781, steps = 68 |
| 4545 | | shifted from previous position = 2.02 |
| 4546 | | rotated from previous position = 3.19 degrees |
| 4547 | | atoms outside contour = 1632, contour level = 0.0084977 |
| 4548 | | |
| 4549 | | > view matrix models |
| 4550 | | > #9,0.17612,0.78168,0.5983,344.65,-0.4452,-0.47883,0.75665,448.79,0.87794,-0.39962,0.26368,370.33> |
| 4551 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4552 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4553 | | average map value = 0.006781, steps = 72 |
| 4554 | | shifted from previous position = 2.82 |
| 4555 | | rotated from previous position = 4.45 degrees |
| 4556 | | atoms outside contour = 1633, contour level = 0.0084977 |
| 4557 | | |
| 4558 | | > view matrix models |
| 4559 | | > #9,0.21221,0.80166,0.55885,343.08,-0.44612,-0.42933,0.78527,448.09,0.86945,-0.41595,0.26653,370.87> |
| 4560 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4561 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4562 | | average map value = 0.006782, steps = 104 |
| 4563 | | shifted from previous position = 1.57 |
| 4564 | | rotated from previous position = 3.33 degrees |
| 4565 | | atoms outside contour = 1631, contour level = 0.0084977 |
| 4566 | | |
| 4567 | | > view matrix models |
| 4568 | | > #9,0.21629,0.84535,0.48848,340.04,-0.44009,-0.36219,0.82167,447.07,0.87152,-0.39269,0.29369,370.89> |
| 4569 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4570 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4571 | | average map value = 0.006782, steps = 72 |
| 4572 | | shifted from previous position = 0.633 |
| 4573 | | rotated from previous position = 4.83 degrees |
| 4574 | | atoms outside contour = 1635, contour level = 0.0084977 |
| 4575 | | |
| 4576 | | > view matrix models |
| 4577 | | > #9,0.25189,0.85883,0.44605,338.6,-0.439,-0.30936,0.84355,446.1,0.86245,-0.4083,0.29911,371.47> |
| 4578 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4579 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4580 | | average map value = 0.006781, steps = 60 |
| 4581 | | shifted from previous position = 1.67 |
| 4582 | | rotated from previous position = 3.32 degrees |
| 4583 | | atoms outside contour = 1634, contour level = 0.0084977 |
| 4584 | | |
| 4585 | | > view matrix models |
| 4586 | | > #9,0.31454,0.86461,0.3918,337.1,-0.43453,-0.23582,0.86924,444.63,0.84394,-0.44366,0.30153,372.54> |
| 4587 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4588 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4589 | | average map value = 0.006782, steps = 84 |
| 4590 | | shifted from previous position = 2.69 |
| 4591 | | rotated from previous position = 4.91 degrees |
| 4592 | | atoms outside contour = 1631, contour level = 0.0084977 |
| 4593 | | |
| 4594 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4595 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4596 | | average map value = 0.006781, steps = 64 |
| 4597 | | shifted from previous position = 0.0389 |
| 4598 | | rotated from previous position = 0.0388 degrees |
| 4599 | | atoms outside contour = 1633, contour level = 0.0084977 |
| 4600 | | |
| 4601 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4602 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4603 | | average map value = 0.006782, steps = 48 |
| 4604 | | shifted from previous position = 0.0547 |
| 4605 | | rotated from previous position = 0.0663 degrees |
| 4606 | | atoms outside contour = 1632, contour level = 0.0084977 |
| 4607 | | |
| 4608 | | > view matrix models |
| 4609 | | > #9,0.34767,0.86197,0.36897,336.63,-0.4519,-0.19075,0.87143,443.37,0.82153,-0.46971,0.32321,373.82> |
| 4610 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4611 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4612 | | average map value = 0.006782, steps = 52 |
| 4613 | | shifted from previous position = 1.86 |
| 4614 | | rotated from previous position = 3.06 degrees |
| 4615 | | atoms outside contour = 1633, contour level = 0.0084977 |
| 4616 | | |
| 4617 | | > view matrix models |
| 4618 | | > #9,0.41831,0.85506,0.30641,335.33,-0.48722,-0.073476,0.87018,439.92,0.76657,-0.5133,0.38587,376.6> |
| 4619 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4620 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4621 | | average map value = 0.006782, steps = 72 |
| 4622 | | shifted from previous position = 4.35 |
| 4623 | | rotated from previous position = 7.34 degrees |
| 4624 | | atoms outside contour = 1633, contour level = 0.0084977 |
| 4625 | | |
| 4626 | | > view matrix models |
| 4627 | | > #9,0.47673,0.83487,0.27516,335.21,-0.50535,0.0041705,0.8629,437.46,0.71927,-0.55043,0.42389,378.55> |
| 4628 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4629 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4630 | | average map value = 0.006782, steps = 72 |
| 4631 | | shifted from previous position = 3.29 |
| 4632 | | rotated from previous position = 5.17 degrees |
| 4633 | | atoms outside contour = 1632, contour level = 0.0084977 |
| 4634 | | |
| 4635 | | > view matrix models |
| 4636 | | > #9,0.54586,0.80222,0.24182,335.45,-0.51991,0.097964,0.84859,434.37,0.65706,-0.58893,0.47055,380.72> |
| 4637 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4638 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4639 | | average map value = 0.006781, steps = 56 |
| 4640 | | shifted from previous position = 4.03 |
| 4641 | | rotated from previous position = 6.21 degrees |
| 4642 | | atoms outside contour = 1632, contour level = 0.0084977 |
| 4643 | | |
| 4644 | | > view matrix models |
| 4645 | | > #9,0.58422,0.78548,0.20423,335.02,-0.52195,0.17093,0.83567,432.01,0.62149,-0.59481,0.50984,381.82> |
| 4646 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4647 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4648 | | average map value = 0.006782, steps = 48 |
| 4649 | | shifted from previous position = 2.44 |
| 4650 | | rotated from previous position = 4.39 degrees |
| 4651 | | atoms outside contour = 1633, contour level = 0.0084977 |
| 4652 | | |
| 4653 | | > view matrix models |
| 4654 | | > #9,0.66003,0.72339,0.20263,336.73,-0.48903,0.20898,0.84686,431.34,0.57027,-0.65805,0.4917,382.95> |
| 4655 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4656 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4657 | | average map value = 0.006781, steps = 88 |
| 4658 | | shifted from previous position = 3.58 |
| 4659 | | rotated from previous position = 5.57 degrees |
| 4660 | | atoms outside contour = 1630, contour level = 0.0084977 |
| 4661 | | |
| 4662 | | > view matrix models |
| 4663 | | > #9,0.69668,0.6908,0.1935,337.39,-0.48527,0.25515,0.83631,429.92,0.52835,-0.67654,0.51298,383.87> |
| 4664 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4665 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4666 | | average map value = 0.006782, steps = 68 |
| 4667 | | shifted from previous position = 2.15 |
| 4668 | | rotated from previous position = 3.52 degrees |
| 4669 | | atoms outside contour = 1633, contour level = 0.0084977 |
| 4670 | | |
| 4671 | | > view matrix models |
| 4672 | | > #9,0.7674,0.61318,0.18737,339.25,-0.46018,0.32324,0.82689,428.1,0.44647,-0.72079,0.53022,385.2> |
| 4673 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4674 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4675 | | average map value = 0.006781, steps = 112 |
| 4676 | | shifted from previous position = 4.07 |
| 4677 | | rotated from previous position = 6.43 degrees |
| 4678 | | atoms outside contour = 1633, contour level = 0.0084977 |
| 4679 | | |
| 4680 | | > view matrix models |
| 4681 | | > #9,0.83471,0.5055,0.21848,342.65,-0.39663,0.27661,0.87532,430.54,0.38204,-0.81729,0.43138,384.71> |
| 4682 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4683 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4684 | | average map value = 0.006782, steps = 72 |
| 4685 | | shifted from previous position = 5.02 |
| 4686 | | rotated from previous position = 8.94 degrees |
| 4687 | | atoms outside contour = 1632, contour level = 0.0084977 |
| 4688 | | |
| 4689 | | > view matrix models |
| 4690 | | > #9,0.87367,0.4305,0.22666,344.72,-0.35999,0.25864,0.89639,431.63,0.32728,-0.86474,0.38094,384.3> |
| 4691 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4692 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4693 | | average map value = 0.006782, steps = 108 |
| 4694 | | shifted from previous position = 3.14 |
| 4695 | | rotated from previous position = 5.31 degrees |
| 4696 | | atoms outside contour = 1633, contour level = 0.0084977 |
| 4697 | | |
| 4698 | | > view matrix models |
| 4699 | | > #9,0.89969,0.36941,0.23257,346.41,-0.33154,0.2317,0.91455,432.86,0.28395,-0.89992,0.33093,383.62> |
| 4700 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4701 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4702 | | average map value = 0.006782, steps = 68 |
| 4703 | | shifted from previous position = 2.64 |
| 4704 | | rotated from previous position = 4.48 degrees |
| 4705 | | atoms outside contour = 1633, contour level = 0.0084977 |
| 4706 | | |
| 4707 | | > view matrix models |
| 4708 | | > #9,0.93128,0.28224,0.23034,348.53,-0.2932,0.20542,0.93372,434.19,0.21622,-0.93709,0.27405,382.59> |
| 4709 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4710 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4711 | | average map value = 0.006781, steps = 104 |
| 4712 | | shifted from previous position = 3.54 |
| 4713 | | rotated from previous position = 5.73 degrees |
| 4714 | | atoms outside contour = 1633, contour level = 0.0084977 |
| 4715 | | |
| 4716 | | > view matrix models |
| 4717 | | > #9,0.94139,0.30383,0.14656,345.85,-0.21345,0.20008,0.95625,435.47,0.26121,-0.93148,0.2532,382.21> |
| 4718 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4719 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4720 | | average map value = 0.006782, steps = 112 |
| 4721 | | shifted from previous position = 2.1 |
| 4722 | | rotated from previous position = 5.33 degrees |
| 4723 | | atoms outside contour = 1632, contour level = 0.0084977 |
| 4724 | | |
| 4725 | | > view matrix models |
| 4726 | | > #9,0.96161,0.25045,0.11219,346.23,-0.18303,0.28069,0.94219,433.5,0.20448,-0.92655,0.31575,383.43> |
| 4727 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4728 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4729 | | average map value = 0.006782, steps = 104 |
| 4730 | | shifted from previous position = 3.38 |
| 4731 | | rotated from previous position = 5.6 degrees |
| 4732 | | atoms outside contour = 1633, contour level = 0.0084977 |
| 4733 | | |
| 4734 | | > view matrix models |
| 4735 | | > #9,0.98255,0.17574,0.060951,346.55,-0.12928,0.40957,0.90307,430.14,0.13375,-0.89519,0.42514,385.22> |
| 4736 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4737 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4738 | | average map value = 0.006781, steps = 60 |
| 4739 | | shifted from previous position = 5.04 |
| 4740 | | rotated from previous position = 8.87 degrees |
| 4741 | | atoms outside contour = 1635, contour level = 0.0084977 |
| 4742 | | |
| 4743 | | > view matrix models |
| 4744 | | > #9,0.99365,0.095442,0.059664,348.19,-0.087313,0.31908,0.9437,433.46,0.071031,-0.94291,0.32539,382.74> |
| 4745 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4746 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4747 | | average map value = 0.006781, steps = 72 |
| 4748 | | shifted from previous position = 4.31 |
| 4749 | | rotated from previous position = 7.49 degrees |
| 4750 | | atoms outside contour = 1633, contour level = 0.0084977 |
| 4751 | | |
| 4752 | | > view matrix models |
| 4753 | | > #9,0.99146,0.12345,-0.042143,344.69,0.0017896,0.31016,0.95068,434.92,0.13044,-0.94263,0.30729,382.93> |
| 4754 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4755 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4756 | | average map value = 0.006782, steps = 112 |
| 4757 | | shifted from previous position = 2.48 |
| 4758 | | rotated from previous position = 6.2 degrees |
| 4759 | | atoms outside contour = 1631, contour level = 0.0084977 |
| 4760 | | |
| 4761 | | > ui mousemode right "translate selected models"> view matrix models |
| 4762 | | > #9,0.99146,0.12345,-0.042143,342.65,0.0017896,0.31016,0.95068,433.45,0.13044,-0.94263,0.30729,381.49> |
| 4763 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4764 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4765 | | average map value = 0.006782, steps = 88 |
| 4766 | | shifted from previous position = 2.9 |
| 4767 | | rotated from previous position = 0.0475 degrees |
| 4768 | | atoms outside contour = 1634, contour level = 0.0084977 |
| 4769 | | |
| 4770 | | > view matrix models |
| 4771 | | > #9,0.99146,0.12345,-0.042143,339.45,0.0017896,0.31016,0.95068,435.85,0.13044,-0.94263,0.30729,382.38> |
| 4772 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4773 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4774 | | average map value = 0.006781, steps = 108 |
| 4775 | | shifted from previous position = 4.1 |
| 4776 | | rotated from previous position = 0.0423 degrees |
| 4777 | | atoms outside contour = 1633, contour level = 0.0084977 |
| 4778 | | |
| 4779 | | > view matrix models |
| 4780 | | > #9,0.99146,0.12345,-0.042143,339.85,0.0017896,0.31016,0.95068,435.55,0.13044,-0.94263,0.30729,382.27> |
| 4781 | | > ui mousemode right "rotate selected models"> view matrix models |
| 4782 | | > #9,0.97798,0.15207,-0.14291,336.02,0.09135,0.30376,0.94836,436.57,0.18762,-0.94054,0.28318,382.1> |
| 4783 | | > ui mousemode right "translate selected models"> view matrix models |
| 4784 | | > #9,0.97798,0.15207,-0.14291,333.58,0.09135,0.30376,0.94836,435.4,0.18762,-0.94054,0.28318,380.77> |
| 4785 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4786 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4787 | | average map value = 0.006782, steps = 68 |
| 4788 | | shifted from previous position = 2.59 |
| 4789 | | rotated from previous position = 6.2 degrees |
| 4790 | | atoms outside contour = 1633, contour level = 0.0084977 |
| 4791 | | |
| 4792 | | > ui mousemode right "translate selected models"> ui mousemode right "rotate |
| 4793 | | > selected models"> view matrix models |
| 4794 | | > #9,0.98965,-0.0080958,-0.14328,336.82,0.13841,0.31741,0.93813,435.32,0.037883,-0.94825,0.31525,380.29> |
| 4795 | | > view matrix models |
| 4796 | | > #9,0.99548,0.0093203,-0.09456,338.1,0.090332,0.21583,0.97224,437.87,0.02947,-0.97639,0.21401,377.51> |
| 4797 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4798 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4799 | | average map value = 0.006781, steps = 112 |
| 4800 | | shifted from previous position = 5.63 |
| 4801 | | rotated from previous position = 10.2 degrees |
| 4802 | | atoms outside contour = 1633, contour level = 0.0084977 |
| 4803 | | |
| 4804 | | > view matrix models |
| 4805 | | > #9,0.99058,-0.068844,-0.11833,338.69,0.13205,0.2523,0.9586,437.29,-0.036138,-0.9652,0.25902,377.93> |
| 4806 | | > view matrix models |
| 4807 | | > #9,0.98606,-0.13199,-0.10131,340.32,0.12681,0.20197,0.97115,438.54,-0.10772,-0.97046,0.2159,375.74> |
| 4808 | | > ui mousemode right "translate selected models"> view matrix models |
| 4809 | | > #9,0.98606,-0.13199,-0.10131,339.76,0.12681,0.20197,0.97115,440.24,-0.10772,-0.97046,0.2159,376.78> |
| 4810 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4811 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4812 | | average map value = 0.006782, steps = 60 |
| 4813 | | shifted from previous position = 5.36 |
| 4814 | | rotated from previous position = 8.16 degrees |
| 4815 | | atoms outside contour = 1633, contour level = 0.0084977 |
| 4816 | | |
| 4817 | | > ui mousemode right "rotate selected models"> view matrix models |
| 4818 | | > #9,0.94936,-0.27174,-0.15772,339.76,0.20035,0.13689,0.97011,442.23,-0.24203,-0.95258,0.1844,373.72> |
| 4819 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4820 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4821 | | average map value = 0.006782, steps = 96 |
| 4822 | | shifted from previous position = 6.44 |
| 4823 | | rotated from previous position = 9.34 degrees |
| 4824 | | atoms outside contour = 1633, contour level = 0.0084977 |
| 4825 | | |
| 4826 | | > view matrix models |
| 4827 | | > #9,0.92398,-0.33277,-0.18846,339.37,0.23189,0.095634,0.96803,443.23,-0.30411,-0.93814,0.16553,372.06> |
| 4828 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4829 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4830 | | average map value = 0.006782, steps = 80 |
| 4831 | | shifted from previous position = 3.04 |
| 4832 | | rotated from previous position = 4.53 degrees |
| 4833 | | atoms outside contour = 1632, contour level = 0.0084977 |
| 4834 | | |
| 4835 | | > view matrix models |
| 4836 | | > #9,0.8957,-0.38747,-0.21815,338.86,0.25872,0.055099,0.96438,444.09,-0.36165,-0.92023,0.1496,370.48> |
| 4837 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4838 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4839 | | average map value = 0.006781, steps = 68 |
| 4840 | | shifted from previous position = 2.83 |
| 4841 | | rotated from previous position = 4.21 degrees |
| 4842 | | atoms outside contour = 1630, contour level = 0.0084977 |
| 4843 | | |
| 4844 | | > view matrix models |
| 4845 | | > #9,0.82815,-0.48586,-0.27947,337.42,0.31227,-0.014117,0.94989,445.38,-0.46546,-0.87392,0.14003,368.07> |
| 4846 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4847 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4848 | | average map value = 0.006781, steps = 56 |
| 4849 | | shifted from previous position = 5.42 |
| 4850 | | rotated from previous position = 8.03 degrees |
| 4851 | | atoms outside contour = 1632, contour level = 0.0084977 |
| 4852 | | |
| 4853 | | > view matrix models |
| 4854 | | > #9,0.77325,-0.54677,-0.32114,336.17,0.34333,-0.064777,0.93698,446.1,-0.53311,-0.83477,0.13763,366.52> |
| 4855 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4856 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4857 | | average map value = 0.006781, steps = 88 |
| 4858 | | shifted from previous position = 3.6 |
| 4859 | | rotated from previous position = 5.47 degrees |
| 4860 | | atoms outside contour = 1633, contour level = 0.0084977 |
| 4861 | | |
| 4862 | | > ui mousemode right "translate selected models"> view matrix models |
| 4863 | | > #9,0.77325,-0.54677,-0.32114,336.73,0.34333,-0.064777,0.93698,442.16,-0.53311,-0.83477,0.13763,365.74> |
| 4864 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4865 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4866 | | average map value = 0.006781, steps = 56 |
| 4867 | | shifted from previous position = 4.06 |
| 4868 | | rotated from previous position = 0.00419 degrees |
| 4869 | | atoms outside contour = 1633, contour level = 0.0084977 |
| 4870 | | |
| 4871 | | > view matrix models |
| 4872 | | > #9,0.77325,-0.54677,-0.32114,337.22,0.34333,-0.064777,0.93698,440.84,-0.53311,-0.83477,0.13763,365.56> |
| 4873 | | > ui mousemode right "translate selected models"> fitmap sel inMap #1 |
| 4874 | | > moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 (#9) to map |
| 4875 | | > postprocess.mrc (#1) using 2123 atoms |
| 4876 | | average map value = 0.006781, steps = 88 |
| 4877 | | shifted from previous position = 1.41 |
| 4878 | | rotated from previous position = 0.0229 degrees |
| 4879 | | atoms outside contour = 1634, contour level = 0.0084977 |
| 4880 | | |
| 4881 | | > view matrix models |
| 4882 | | > #9,0.77325,-0.54677,-0.32114,335.31,0.34333,-0.064777,0.93698,438.09,-0.53311,-0.83477,0.13763,365.41> |
| 4883 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4884 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4885 | | average map value = 0.006781, steps = 48 |
| 4886 | | shifted from previous position = 3.35 |
| 4887 | | rotated from previous position = 0.0167 degrees |
| 4888 | | atoms outside contour = 1633, contour level = 0.0084977 |
| 4889 | | |
| 4890 | | > view matrix models |
| 4891 | | > #9,0.77325,-0.54677,-0.32114,334.05,0.34333,-0.064777,0.93698,435.82,-0.53311,-0.83477,0.13763,365.27> |
| 4892 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4893 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4894 | | average map value = 0.006781, steps = 48 |
| 4895 | | shifted from previous position = 2.6 |
| 4896 | | rotated from previous position = 0.014 degrees |
| 4897 | | atoms outside contour = 1633, contour level = 0.0084977 |
| 4898 | | |
| 4899 | | > view matrix models |
| 4900 | | > #9,0.77325,-0.54677,-0.32114,332.56,0.34333,-0.064777,0.93698,431.78,-0.53311,-0.83477,0.13763,364.96> |
| 4901 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4902 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4903 | | average map value = 0.006782, steps = 104 |
| 4904 | | shifted from previous position = 4.32 |
| 4905 | | rotated from previous position = 0.0647 degrees |
| 4906 | | atoms outside contour = 1633, contour level = 0.0084977 |
| 4907 | | |
| 4908 | | > view matrix models |
| 4909 | | > #9,0.77325,-0.54677,-0.32114,331.95,0.34333,-0.064777,0.93698,428.43,-0.53311,-0.83477,0.13763,364.64> |
| 4910 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4911 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4912 | | average map value = 0.006782, steps = 72 |
| 4913 | | shifted from previous position = 3.43 |
| 4914 | | rotated from previous position = 0.0132 degrees |
| 4915 | | atoms outside contour = 1631, contour level = 0.0084977 |
| 4916 | | |
| 4917 | | > view matrix models |
| 4918 | | > #9,0.77325,-0.54677,-0.32114,331.76,0.34333,-0.064777,0.93698,426.64,-0.53311,-0.83477,0.13763,364.47> |
| 4919 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4920 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4921 | | average map value = 0.006782, steps = 84 |
| 4922 | | shifted from previous position = 1.8 |
| 4923 | | rotated from previous position = 0.0296 degrees |
| 4924 | | atoms outside contour = 1632, contour level = 0.0084977 |
| 4925 | | |
| 4926 | | > view matrix models |
| 4927 | | > #9,0.77325,-0.54677,-0.32114,331.81,0.34333,-0.064777,0.93698,423.53,-0.53311,-0.83477,0.13763,364.13> |
| 4928 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4929 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4930 | | average map value = 0.006782, steps = 84 |
| 4931 | | shifted from previous position = 3.12 |
| 4932 | | rotated from previous position = 0.0356 degrees |
| 4933 | | atoms outside contour = 1633, contour level = 0.0084977 |
| 4934 | | |
| 4935 | | > view matrix models |
| 4936 | | > #9,0.77325,-0.54677,-0.32114,332.96,0.34333,-0.064777,0.93698,421.78,-0.53311,-0.83477,0.13763,363.84> |
| 4937 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4938 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4939 | | average map value = 0.006781, steps = 84 |
| 4940 | | shifted from previous position = 2.11 |
| 4941 | | rotated from previous position = 0.0418 degrees |
| 4942 | | atoms outside contour = 1633, contour level = 0.0084977 |
| 4943 | | |
| 4944 | | > view matrix models |
| 4945 | | > #9,0.77325,-0.54677,-0.32114,334.11,0.34333,-0.064777,0.93698,419.59,-0.53311,-0.83477,0.13763,363.51> |
| 4946 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4947 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4948 | | average map value = 0.006782, steps = 68 |
| 4949 | | shifted from previous position = 2.49 |
| 4950 | | rotated from previous position = 0.0764 degrees |
| 4951 | | atoms outside contour = 1633, contour level = 0.0084977 |
| 4952 | | |
| 4953 | | > view matrix models |
| 4954 | | > #9,0.77325,-0.54677,-0.32114,334.99,0.34333,-0.064777,0.93698,419.05,-0.53311,-0.83477,0.13763,364.92> |
| 4955 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4956 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4957 | | average map value = 0.006782, steps = 64 |
| 4958 | | shifted from previous position = 1.74 |
| 4959 | | rotated from previous position = 0.0445 degrees |
| 4960 | | atoms outside contour = 1633, contour level = 0.0084977 |
| 4961 | | |
| 4962 | | > view matrix models |
| 4963 | | > #9,0.77325,-0.54677,-0.32114,336.11,0.34333,-0.064777,0.93698,417.5,-0.53311,-0.83477,0.13763,366.08> |
| 4964 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4965 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4966 | | average map value = 0.006781, steps = 44 |
| 4967 | | shifted from previous position = 2.24 |
| 4968 | | rotated from previous position = 0.0309 degrees |
| 4969 | | atoms outside contour = 1633, contour level = 0.0084977 |
| 4970 | | |
| 4971 | | > view matrix models |
| 4972 | | > #9,0.77325,-0.54677,-0.32114,336.99,0.34333,-0.064777,0.93698,415.8,-0.53311,-0.83477,0.13763,367.35> |
| 4973 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4974 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4975 | | average map value = 0.006782, steps = 64 |
| 4976 | | shifted from previous position = 2.31 |
| 4977 | | rotated from previous position = 0.0358 degrees |
| 4978 | | atoms outside contour = 1633, contour level = 0.0084977 |
| 4979 | | |
| 4980 | | > view matrix models |
| 4981 | | > #9,0.77325,-0.54677,-0.32114,340.17,0.34333,-0.064777,0.93698,412.98,-0.53311,-0.83477,0.13763,369.45> |
| 4982 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4983 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4984 | | average map value = 0.006781, steps = 52 |
| 4985 | | shifted from previous position = 4.76 |
| 4986 | | rotated from previous position = 0.0468 degrees |
| 4987 | | atoms outside contour = 1631, contour level = 0.0084977 |
| 4988 | | |
| 4989 | | > view matrix models |
| 4990 | | > #9,0.77325,-0.54677,-0.32114,340.95,0.34333,-0.064777,0.93698,412.06,-0.53311,-0.83477,0.13763,371.98> |
| 4991 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 4992 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 4993 | | average map value = 0.006782, steps = 88 |
| 4994 | | shifted from previous position = 2.78 |
| 4995 | | rotated from previous position = 0.0444 degrees |
| 4996 | | atoms outside contour = 1633, contour level = 0.0084977 |
| 4997 | | |
| 4998 | | > ui mousemode right "rotate selected models"> view matrix models |
| 4999 | | > #9,0.7178,-0.55951,-0.41439,338.12,0.3933,-0.16528,0.90443,413.67,-0.57453,-0.81218,0.10141,370.13> |
| 5000 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 5001 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 5002 | | average map value = 0.006782, steps = 72 |
| 5003 | | shifted from previous position = 3.9 |
| 5004 | | rotated from previous position = 6.92 degrees |
| 5005 | | atoms outside contour = 1631, contour level = 0.0084977 |
| 5006 | | |
| 5007 | | > view matrix models |
| 5008 | | > #9,0.73481,-0.51747,-0.4385,337,0.41632,-0.1663,0.89388,413.71,-0.53548,-0.83939,0.09324,370.89> |
| 5009 | | > view matrix models |
| 5010 | | > #9,0.67825,-0.52005,-0.51915,334.29,0.45761,-0.25385,0.85215,414.67,-0.57494,-0.81554,0.065812,369.28> |
| 5011 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 5012 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 5013 | | average map value = 0.006782, steps = 64 |
| 5014 | | shifted from previous position = 3.87 |
| 5015 | | rotated from previous position = 7.06 degrees |
| 5016 | | atoms outside contour = 1634, contour level = 0.0084977 |
| 5017 | | |
| 5018 | | > ui mousemode right "translate selected models"> view matrix models |
| 5019 | | > #9,0.67825,-0.52005,-0.51915,335,0.45761,-0.25385,0.85215,411.58,-0.57494,-0.81554,0.065812,369.68> |
| 5020 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 5021 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 5022 | | average map value = 0.006781, steps = 88 |
| 5023 | | shifted from previous position = 3.22 |
| 5024 | | rotated from previous position = 0.0832 degrees |
| 5025 | | atoms outside contour = 1633, contour level = 0.0084977 |
| 5026 | | |
| 5027 | | > view matrix models |
| 5028 | | > #9,0.67825,-0.52005,-0.51915,336.13,0.45761,-0.25385,0.85215,410.05,-0.57494,-0.81554,0.065812,369.97> |
| 5029 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 5030 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 5031 | | average map value = 0.006781, steps = 100 |
| 5032 | | shifted from previous position = 1.92 |
| 5033 | | rotated from previous position = 0.025 degrees |
| 5034 | | atoms outside contour = 1634, contour level = 0.0084977 |
| 5035 | | |
| 5036 | | > view matrix models |
| 5037 | | > #9,0.67825,-0.52005,-0.51915,337.5,0.45761,-0.25385,0.85215,407.2,-0.57494,-0.81554,0.065812,370.42> |
| 5038 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 5039 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 5040 | | average map value = 0.006781, steps = 84 |
| 5041 | | shifted from previous position = 3.2 |
| 5042 | | rotated from previous position = 0.0183 degrees |
| 5043 | | atoms outside contour = 1633, contour level = 0.0084977 |
| 5044 | | |
| 5045 | | > view matrix models |
| 5046 | | > #9,0.67825,-0.52005,-0.51915,338.19,0.45761,-0.25385,0.85215,405.44,-0.57494,-0.81554,0.065812,370.68> |
| 5047 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 5048 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 5049 | | average map value = 0.006782, steps = 88 |
| 5050 | | shifted from previous position = 1.9 |
| 5051 | | rotated from previous position = 0.0472 degrees |
| 5052 | | atoms outside contour = 1632, contour level = 0.0084977 |
| 5053 | | |
| 5054 | | > view matrix models |
| 5055 | | > #9,0.67825,-0.52005,-0.51915,339.32,0.45761,-0.25385,0.85215,403.47,-0.57494,-0.81554,0.065812,371.01> |
| 5056 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 5057 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 5058 | | average map value = 0.006782, steps = 84 |
| 5059 | | shifted from previous position = 2.31 |
| 5060 | | rotated from previous position = 0.00501 degrees |
| 5061 | | atoms outside contour = 1632, contour level = 0.0084977 |
| 5062 | | |
| 5063 | | > view matrix models |
| 5064 | | > #9,0.67825,-0.52005,-0.51915,341.08,0.45761,-0.25385,0.85215,402.27,-0.57494,-0.81554,0.065812,371.34> |
| 5065 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 5066 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 5067 | | average map value = 0.006781, steps = 44 |
| 5068 | | shifted from previous position = 2.15 |
| 5069 | | rotated from previous position = 0.0538 degrees |
| 5070 | | atoms outside contour = 1630, contour level = 0.0084977 |
| 5071 | | |
| 5072 | | > ui mousemode right "rotate selected models"> view matrix models |
| 5073 | | > #9,0.68238,-0.51479,-0.51898,341.04,0.43744,-0.28125,0.85414,402.55,-0.58566,-0.80987,0.033274,370.31> |
| 5074 | | > view matrix models |
| 5075 | | > #9,0.65688,-0.50421,-0.5606,339.52,0.46738,-0.31114,0.8275,402.82,-0.59166,-0.80558,0.031274,370.11> |
| 5076 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 5077 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 5078 | | average map value = 0.006781, steps = 104 |
| 5079 | | shifted from previous position = 2.24 |
| 5080 | | rotated from previous position = 3.61 degrees |
| 5081 | | atoms outside contour = 1633, contour level = 0.0084977 |
| 5082 | | |
| 5083 | | > view matrix models |
| 5084 | | > #9,0.63653,-0.50347,-0.58425,338.66,0.479,-0.33565,0.81111,402.98,-0.60447,-0.79615,0.027511,369.69> |
| 5085 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 5086 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 5087 | | average map value = 0.006782, steps = 72 |
| 5088 | | shifted from previous position = 0.981 |
| 5089 | | rotated from previous position = 1.93 degrees |
| 5090 | | atoms outside contour = 1632, contour level = 0.0084977 |
| 5091 | | |
| 5092 | | > view matrix models |
| 5093 | | > #9,0.54609,-0.4734,-0.69114,334.3,0.54331,-0.42784,0.72234,403.14,-0.63765,-0.76996,0.023556,368.72> |
| 5094 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 5095 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 5096 | | average map value = 0.006782, steps = 100 |
| 5097 | | shifted from previous position = 4.27 |
| 5098 | | rotated from previous position = 8.41 degrees |
| 5099 | | atoms outside contour = 1630, contour level = 0.0084977 |
| 5100 | | |
| 5101 | | > view matrix models |
| 5102 | | > #9,0.53268,-0.49064,-0.68958,334.45,0.55227,-0.41589,0.72252,403.06,-0.64128,-0.76571,0.049429,369.26> |
| 5103 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 5104 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 5105 | | average map value = 0.006781, steps = 44 |
| 5106 | | shifted from previous position = 0.527 |
| 5107 | | rotated from previous position = 1.47 degrees |
| 5108 | | atoms outside contour = 1633, contour level = 0.0084977 |
| 5109 | | |
| 5110 | | > ui mousemode right "translate selected models"> view matrix models |
| 5111 | | > #9,0.53268,-0.49064,-0.68958,335.38,0.55227,-0.41589,0.72252,401.67,-0.64128,-0.76571,0.049429,369.88> |
| 5112 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 5113 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 5114 | | average map value = 0.006781, steps = 52 |
| 5115 | | shifted from previous position = 1.78 |
| 5116 | | rotated from previous position = 0.0462 degrees |
| 5117 | | atoms outside contour = 1632, contour level = 0.0084977 |
| 5118 | | |
| 5119 | | > view matrix models |
| 5120 | | > #9,0.53268,-0.49064,-0.68958,337.03,0.55227,-0.41589,0.72252,398.25,-0.64128,-0.76571,0.049429,371.22> |
| 5121 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 5122 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 5123 | | average map value = 0.006781, steps = 72 |
| 5124 | | shifted from previous position = 4 |
| 5125 | | rotated from previous position = 0.0539 degrees |
| 5126 | | atoms outside contour = 1633, contour level = 0.0084977 |
| 5127 | | |
| 5128 | | > view matrix models |
| 5129 | | > #9,0.53268,-0.49064,-0.68958,336.5,0.55227,-0.41589,0.72252,396.14,-0.64128,-0.76571,0.049429,371.91> |
| 5130 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 5131 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 5132 | | average map value = 0.006781, steps = 48 |
| 5133 | | shifted from previous position = 2.28 |
| 5134 | | rotated from previous position = 0.0375 degrees |
| 5135 | | atoms outside contour = 1633, contour level = 0.0084977 |
| 5136 | | |
| 5137 | | > view matrix models |
| 5138 | | > #9,0.53268,-0.49064,-0.68958,336.5,0.55227,-0.41589,0.72252,394.77,-0.64128,-0.76571,0.049429,372.12> |
| 5139 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 5140 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 5141 | | average map value = 0.006782, steps = 52 |
| 5142 | | shifted from previous position = 1.4 |
| 5143 | | rotated from previous position = 0.0123 degrees |
| 5144 | | atoms outside contour = 1633, contour level = 0.0084977 |
| 5145 | | |
| 5146 | | > ui mousemode right "translate selected models"> ui mousemode right "rotate |
| 5147 | | > selected models"> view matrix models |
| 5148 | | > #9,0.48168,-0.52169,-0.70415,336.01,0.54192,-0.45414,0.70716,394.9,-0.6887,-0.72222,0.063968,371.16> |
| 5149 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 5150 | | > (#9) to map postprocess.mrc (#1) using 2123 atoms |
| 5151 | | average map value = 0.006782, steps = 84 |
| 5152 | | shifted from previous position = 2.18 |
| 5153 | | rotated from previous position = 4.06 degrees |
| 5154 | | atoms outside contour = 1633, contour level = 0.0084977 |
| 5155 | | |
| 5156 | | > select #9:1-5844566 atoms, 4638 bonds, 584 residues, 1 model selected |
| 5157 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 5158 | | > (#9) to map postprocess.mrc (#1) using 4566 atoms |
| 5159 | | average map value = 0.008702, steps = 84 |
| 5160 | | shifted from previous position = 7.03 |
| 5161 | | rotated from previous position = 12.9 degrees |
| 5162 | | atoms outside contour = 2382, contour level = 0.0084977 |
| 5163 | | |
| 5164 | | > select clear> hide #5 models> hide #!1 models> select #9:517-584535 atoms, |
| 5165 | | > 543 bonds, 68 residues, 1 model selected |
| 5166 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 5167 | | > (#9) to map postprocess.mrc (#1) using 535 atoms |
| 5168 | | average map value = 0.007748, steps = 80 |
| 5169 | | shifted from previous position = 1.92 |
| 5170 | | rotated from previous position = 4.63 degrees |
| 5171 | | atoms outside contour = 310, contour level = 0.0084977 |
| 5172 | | |
| 5173 | | > show #!1 models> show #5 models> select clear> volume #1 level 0.00753> show |
| 5174 | | > #!2 models> show #3 models> hide #!2 models> show #4 models> show #8 models> |
| 5175 | | > show #7 models> show #6 models> hide #9 models> hide #8 models> show #8 |
| 5176 | | > models> hide #7 models> hide #6 models> hide #3 models> hide #4 models> hide |
| 5177 | | > #5 models> select #8:1-1781453 atoms, 1472 bonds, 178 residues, 1 model |
| 5178 | | > selected |
| 5179 | | > fitmap sel inMap #1Fit molecule AlphaFold Q5XJY5 (#8) to map postprocess.mrc |
| 5180 | | > (#1) using 1453 atoms |
| 5181 | | average map value = 0.008626, steps = 80 |
| 5182 | | shifted from previous position = 1.02 |
| 5183 | | rotated from previous position = 3.47 degrees |
| 5184 | | atoms outside contour = 690, contour level = 0.0075295 |
| 5185 | | |
| 5186 | | Position of AlphaFold Q5XJY5 (#8) relative to postprocess.mrc (#1) |
| 5187 | | coordinates: |
| 5188 | | Matrix rotation and translation |
| 5189 | | 0.15504099 0.95631904 0.24782288 253.82646300 |
| 5190 | | -0.90175689 0.03454077 0.43086129 302.50191978 |
| 5191 | | 0.40348086 -0.29027715 0.86772252 330.45240550 |
| 5192 | | Axis -0.36071731 -0.07786096 -0.92941954 |
| 5193 | | Axis point 212.05516318 81.20858689 0.00000000 |
| 5194 | | Rotation angle (degrees) 88.35812850 |
| 5195 | | Shift along axis -422.24161336 |
| 5196 | | |
| 5197 | | > volume #1 level 0.01043> volume #1 level 0.009742> show #!2 models> hide #!2 |
| 5198 | | > models> show #3 models> show #4 models> show #5 models> show #6 models> show |
| 5199 | | > #7 models> show #9 models> show #10 models> select clear> show #!2 models> |
| 5200 | | > volume #2 level 0.09192> volume #2 level 0.2169> hide #!2 models> ui tool |
| 5201 | | > show AlphaFoldFetching compressed Q9CRA5 UniProt info from |
| 5202 | | > https://www.uniprot.org/uniprot/Q9CRA5.xml |
| 5203 | | > alphafold match Q9CRA5Fetching compressed AlphaFold Q9CRA5 from |
| 5204 | | > https://alphafold.ebi.ac.uk/files/AF-Q9CRA5-F1-model_v4.cif |
| 5205 | | 1 AlphaFold model found using UniProt identifier: Q9CRA5 (UniProt Q9CRA5) |
| 5206 | | | Sequence Similarity |
| 5207 | | --- |
| 5208 | | AlphaFold Model| Query Sequence| Identity %| Coverage % |
| 5209 | | Q9CRA5 | Q9CRA5 | 100.0 | 100.0 |
| 5210 | | Opened 1 AlphaFold model |
| 5211 | | > select add #112367 atoms, 2398 bonds, 298 residues, 1 model selected |
| 5212 | | > ui mousemode right "translate selected models"> view matrix models |
| 5213 | | > #11,1,0,0,286.27,0,1,0,282.99,0,0,1,272.4> view matrix models |
| 5214 | | > #11,1,0,0,288.58,0,1,0,364.1,0,0,1,265.21> view matrix models |
| 5215 | | > #11,1,0,0,297.99,0,1,0,368.21,0,0,1,317.05> ui mousemode right "rotate |
| 5216 | | > selected models"> view matrix models |
| 5217 | | > #11,0.99397,-0.020497,0.10769,298.11,-0.032135,0.88472,0.46502,368.63,-0.1048,-0.46568,0.87873,314.67> |
| 5218 | | > hide #3 models> hide #4 models> hide #5 models> hide #6 models> hide #7 |
| 5219 | | > models> hide #8 models> hide #9 models> hide #10 models> view matrix models |
| 5220 | | > #11,0.84844,-0.32207,0.42002,296.59,-0.5206,-0.651,0.55243,360.31,0.095516,-0.68737,-0.72,312.88> |
| 5221 | | > view matrix models |
| 5222 | | > #11,0.81812,-0.34541,0.45975,296.3,-0.56853,-0.60586,0.55651,359.9,0.086316,-0.71668,-0.69204,312.78> |
| 5223 | | > view matrix models |
| 5224 | | > #11,0.58772,-0.41319,0.6956,294.19,-0.80874,-0.27569,0.51955,357.93,-0.022902,-0.86791,-0.49619,311.71> |
| 5225 | | > ui mousemode right "translate selected models"> view matrix models |
| 5226 | | > #11,0.58772,-0.41319,0.6956,310.63,-0.80874,-0.27569,0.51955,351.47,-0.022902,-0.86791,-0.49619,304.59> |
| 5227 | | > view matrix models |
| 5228 | | > #11,0.58772,-0.41319,0.6956,310.03,-0.80874,-0.27569,0.51955,346.98,-0.022902,-0.86791,-0.49619,304.94> |
| 5229 | | > select #11:57-10001954 atoms, 1985 bonds, 242 residues, 1 model selected |
| 5230 | | > ui tool show "Fit in Map"> fitmap sel inMap #1Fit molecule AlphaFold Q9CRA5 |
| 5231 | | > (#11) to map postprocess.mrc (#1) using 1954 atoms |
| 5232 | | average map value = 0.008773, steps = 60 |
| 5233 | | shifted from previous position = 2.39 |
| 5234 | | rotated from previous position = 17.6 degrees |
| 5235 | | atoms outside contour = 1138, contour level = 0.0097424 |
| 5236 | | |
| 5237 | | Position of AlphaFold Q9CRA5 (#11) relative to postprocess.mrc (#1) |
| 5238 | | coordinates: |
| 5239 | | Matrix rotation and translation |
| 5240 | | 0.64865054 -0.27425736 0.70995449 310.01926151 |
| 5241 | | -0.71703282 -0.53296917 0.44923022 345.45914188 |
| 5242 | | 0.25517916 -0.80045410 -0.54236227 303.67555190 |
| 5243 | | Axis -0.89159019 0.32446052 -0.31589919 |
| 5244 | | Axis point 0.00000000 279.93960156 -1.69675172 |
| 5245 | | Rotation angle (degrees) 135.50735744 |
| 5246 | | Shift along axis -260.25314202 |
| 5247 | | |
| 5248 | | > show #3 models> show #4 models> show #5 models> show #6 models> show #7 |
| 5249 | | > models> show #8 models> show #9 models> show #10 models> show #!2 models> |
| 5250 | | > volume #2 level 0.2032> volume #1 level 0.01362> volume #2 level 0.1792> |
| 5251 | | > select clear> hide #3 models> hide #4 models> hide #5 models> hide #6 |
| 5252 | | > models> hide #7 models> hide #8 models> hide #9 models> hide #10 models> |
| 5253 | | > volume #1 level 0.01196> volume #2 level 0.1039> volume #2 level 0.1552> |
| 5254 | | > hide #!2 models> hide #11 models> save /fs/gpfs41/lv09/fileset01/pool/pool- |
| 5255 | | > briggs/tagiltsev/warp_4becca/warpV1_erase/relion/PostProcess/job062/alphafold_copi.cxs[Errno |
| 5256 | | > 13] Permission denied: '/fs/gpfs41/lv09/fileset01/pool/pool- |
| 5257 | | > briggs/tagiltsev/warp_4becca/warpV1_erase/relion/PostProcess/job062/alphafold_copi.cxs.13524.tmp' |
| 5258 | | > save /fs/gpfs41/lv09/fileset01/pool/pool- |
| 5259 | | > briggs/tagiltsev/warp_4becca/warpV1_erase/relion/PostProcess/copi_alphafold.cxs[Errno |
| 5260 | | > 13] Permission denied: '/fs/gpfs41/lv09/fileset01/pool/pool- |
| 5261 | | > briggs/tagiltsev/warp_4becca/warpV1_erase/relion/PostProcess/copi_alphafold.cxs.13524.tmp' |
| 5262 | | > save /fs/pool/pool-briggs/zke/alphafold_copi_gt.cxs includeMaps true——— End |
| 5263 | | > of log from Sun Nov 5 03:35:04 2023 ———opened ChimeraX session |
| 5264 | | > show #3 models> show #4 models> show #5 models> show #6 models> show #7 |
| 5265 | | > models> show #8 models> show #9 models> show #!2 models> hide #!2 models> |
| 5266 | | > volume #1 level 0.009804> show #10 models> show #11 models> show #!2 models> |
| 5267 | | > hide #!2 models> select #9:98-196760 atoms, 769 bonds, 99 residues, 1 model |
| 5268 | | > selected |
| 5269 | | > select #9:98-198772 atoms, 781 bonds, 101 residues, 1 model selected |
| 5270 | | > select #9:98-12086059 atoms, 6162 bonds, 777 residues, 1 model selected |
| 5271 | | > select #9:98-208864 atoms, 875 bonds, 111 residues, 1 model selected |
| 5272 | | > select #9:98-207853 atoms, 864 bonds, 110 residues, 1 model selected |
| 5273 | | > ui tool show "Fit in Map"> fitmap sel inMap #1 moveWholeMolecules falseFit |
| 5274 | | > molecule AlphaFold Q9QZE5 (#9) to map postprocess.mrc (#1) using 853 atoms |
| 5275 | | average map value = 0.01232, steps = 64 |
| 5276 | | shifted from previous position = 6.32 |
| 5277 | | rotated from previous position = 18.5 degrees |
| 5278 | | atoms outside contour = 344, contour level = 0.0098043 |
| 5279 | | |
| 5280 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 5281 | | > (#9) to map postprocess.mrc (#1) using 853 atoms |
| 5282 | | average map value = 0.01232, steps = 44 |
| 5283 | | shifted from previous position = 0.0596 |
| 5284 | | rotated from previous position = 0.14 degrees |
| 5285 | | atoms outside contour = 345, contour level = 0.0098043 |
| 5286 | | |
| 5287 | | > select #9:200-222193 atoms, 196 bonds, 23 residues, 1 model selected |
| 5288 | | > select #9:206-222136 atoms, 137 bonds, 17 residues, 1 model selected |
| 5289 | | > select #9:207-222128 atoms, 129 bonds, 16 residues, 1 model selected |
| 5290 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 |
| 5291 | | > (#9) to map postprocess.mrc (#1) using 128 atoms |
| 5292 | | average map value = 0.0125, steps = 104 |
| 5293 | | shifted from previous position = 8.69 |
| 5294 | | rotated from previous position = 12 degrees |
| 5295 | | atoms outside contour = 52, contour level = 0.0098043 |
| 5296 | | |
| 5297 | | > select #9:2078 atoms, 7 bonds, 1 residue, 1 model selected |
| 5298 | | > ui mousemode right "translate selected atoms"> select #9:2068 atoms, 7 |
| 5299 | | > bonds, 1 residue, 1 model selected |
| 5300 | | > select #9:2059 atoms, 8 bonds, 1 residue, 1 model selected |
| 5301 | | > select #9:2008 atoms, 7 bonds, 1 residue, 1 model selected |
| 5302 | | > select #9:1984 atoms, 3 bonds, 1 residue, 1 model selected |
| 5303 | | > select #9:1998 atoms, 7 bonds, 1 residue, 1 model selected |
| 5304 | | > select #9:2008 atoms, 7 bonds, 1 residue, 1 model selected |
| 5305 | | > select #9:20112 atoms, 12 bonds, 1 residue, 1 model selected |
| 5306 | | > select #9:20210 atoms, 10 bonds, 1 residue, 1 model selected |
| 5307 | | > select #9:2037 atoms, 6 bonds, 1 residue, 1 model selected |
| 5308 | | > select #9:20210 atoms, 10 bonds, 1 residue, 1 model selected |
| 5309 | | > 1Unknown command: 1 |
| 5310 | | > select #9:20112 atoms, 12 bonds, 1 residue, 1 model selected |
| 5311 | | > select #9:20210 atoms, 10 bonds, 1 residue, 1 model selected |
| 5312 | | > select #9:2037 atoms, 6 bonds, 1 residue, 1 model selected |
| 5313 | | > select #9:20210 atoms, 10 bonds, 1 residue, 1 model selected |
| 5314 | | > select #9:20112 atoms, 12 bonds, 1 residue, 1 model selected |
| 5315 | | > select #9:20411 atoms, 10 bonds, 1 residue, 1 model selected |
| 5316 | | > select #9:2037 atoms, 6 bonds, 1 residue, 1 model selected |
| 5317 | | > select #9:2059 atoms, 8 bonds, 1 residue, 1 model selected |
| 5318 | | > hide #3 models> hide #4 models> hide #5 models> hide #6 models> hide #7 |
| 5319 | | > models> hide #11 models> hide #10 models> hide #8 models> select #9:20411 |
| 5320 | | > atoms, 10 bonds, 1 residue, 1 model selected |
| 5321 | | > select #9:2037 atoms, 6 bonds, 1 residue, 1 model selected |
| 5322 | | > select #9:1998 atoms, 7 bonds, 1 residue, 1 model selected |
| 5323 | | > select #9:2008 atoms, 7 bonds, 1 residue, 1 model selected |
| 5324 | | > select #9:2008 atoms, 7 bonds, 1 residue, 1 model selected |
| 5325 | | > select #9:20112 atoms, 12 bonds, 1 residue, 1 model selected |
| 5326 | | > select #9:20210 atoms, 10 bonds, 1 residue, 1 model selected |
| 5327 | | > select #9:2037 atoms, 6 bonds, 1 residue, 1 model selected |
| 5328 | | > select #9:2059 atoms, 8 bonds, 1 residue, 1 model selected |
| 5329 | | > select #9:20411 atoms, 10 bonds, 1 residue, 1 model selected |
| 5330 | | > select #9:2037 atoms, 6 bonds, 1 residue, 1 model selected |
| 5331 | | > select #9:20210 atoms, 10 bonds, 1 residue, 1 model selected |
| 5332 | | > select #9:2037 atoms, 6 bonds, 1 residue, 1 model selected |
| 5333 | | > select #9:20411 atoms, 10 bonds, 1 residue, 1 model selected |
| 5334 | | > select #9:2037 atoms, 6 bonds, 1 residue, 1 model selected |
| 5335 | | > select #9:2059 atoms, 8 bonds, 1 residue, 1 model selected |
| 5336 | | > select #9:2068 atoms, 7 bonds, 1 residue, 1 model selected |
| 5337 | | > select #9:2078 atoms, 7 bonds, 1 residue, 1 model selected |
| 5338 | | > select clear> select #9/A:6057 atoms, 6 bonds, 1 residue, 1 model selected |
| 5339 | | > select #9:584-604157 atoms, 159 bonds, 21 residues, 1 model selected |
| 5340 | | > select #9:590-604112 atoms, 113 bonds, 15 residues, 1 model selected |
| 5341 | | > select #9:588-604130 atoms, 131 bonds, 17 residues, 1 model selected |
| 5342 | | > select #9:586-604143 atoms, 144 bonds, 19 residues, 1 model selected |
| 5343 | | > select #9:585-604150 atoms, 152 bonds, 20 residues, 1 model selected |
| 5344 | | > select #9:584-604157 atoms, 159 bonds, 21 residues, 1 model selected |
| 5345 | | > delete sel> hide #!9 models> show #8 models> select #9:257-10004654 atoms, |
| 5346 | | > 4733 bonds, 1 pseudobond, 597 residues, 2 models selected |
| 5347 | | > select #8\:257-1000Expected an objects specifier or a keyword |
| 5348 | | > select #8:257-10002014 atoms, 2054 bonds, 255 residues, 1 model selected |
| 5349 | | > ui mousemode right "translate selected atoms"> fitmap sel inMap #1 |
| 5350 | | > moveWholeMolecules falseFit molecule AlphaFold Q5XJY5 (#8) to map |
| 5351 | | > postprocess.mrc (#1) using 2014 atoms |
| 5352 | | average map value = 0.006316, steps = 60 |
| 5353 | | shifted from previous position = 7.18 |
| 5354 | | rotated from previous position = 6.19 degrees |
| 5355 | | atoms outside contour = 1480, contour level = 0.0098043 |
| 5356 | | |
| 5357 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q5XJY5 |
| 5358 | | > (#8) to map postprocess.mrc (#1) using 2014 atoms |
| 5359 | | average map value = 0.006563, steps = 148 |
| 5360 | | shifted from previous position = 19.3 |
| 5361 | | rotated from previous position = 20.9 degrees |
| 5362 | | atoms outside contour = 1472, contour level = 0.0098043 |
| 5363 | | |
| 5364 | | > select add #84014 atoms, 4083 bonds, 511 residues, 1 model selected |
| 5365 | | > ui mousemode right "rotate selected models"> view matrix models |
| 5366 | | > #8,-0.65575,-0.45666,0.60121,239.54,0.70208,-0.076013,0.70803,346.55,-0.27763,0.88639,0.37046,305.61> |
| 5367 | | > view matrix models |
| 5368 | | > #8,-0.41192,-0.5627,0.71672,247.03,0.89918,-0.12358,0.41976,349.78,-0.14763,0.81737,0.55688,310.53> |
| 5369 | | > view matrix models |
| 5370 | | > #8,0.043275,-0.70295,0.70992,259.25,0.97747,0.17673,0.11541,348.75,-0.20659,0.68893,0.69476,310.36> |
| 5371 | | > view matrix models |
| 5372 | | > #8,-0.55786,-0.70229,0.44225,241.71,0.82871,-0.5003,0.25087,347.91,0.045081,0.50645,0.86109,318.64> |
| 5373 | | > view matrix models |
| 5374 | | > #8,-0.67786,-0.63134,0.37673,237.91,0.73318,-0.61845,0.2828,346.01,0.054444,0.4679,0.8821,319.15> |
| 5375 | | > ui mousemode right "translate selected models"> view matrix models |
| 5376 | | > #8,-0.67786,-0.63134,0.37673,251.48,0.73318,-0.61845,0.2828,366.41,0.054444,0.4679,0.8821,310.61> |
| 5377 | | > view matrix models |
| 5378 | | > #8,-0.67786,-0.63134,0.37673,254.38,0.73318,-0.61845,0.2828,374.81,0.054444,0.4679,0.8821,310.23> |
| 5379 | | > view matrix models |
| 5380 | | > #8,-0.67786,-0.63134,0.37673,264.5,0.73318,-0.61845,0.2828,373.94,0.054444,0.4679,0.8821,312.95> |
| 5381 | | > select #8:257-10002014 atoms, 2054 bonds, 255 residues, 1 model selected |
| 5382 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q5XJY5 |
| 5383 | | > (#8) to map postprocess.mrc (#1) using 2014 atoms |
| 5384 | | average map value = 0.007698, steps = 100 |
| 5385 | | shifted from previous position = 18.4 |
| 5386 | | rotated from previous position = 35.6 degrees |
| 5387 | | atoms outside contour = 1372, contour level = 0.0098043 |
| 5388 | | |
| 5389 | | > view matrix models |
| 5390 | | > #8,-0.67786,-0.63134,0.37673,241.27,0.73318,-0.61845,0.2828,379.02,0.054444,0.4679,0.8821,275.08> |
| 5391 | | > view matrix models |
| 5392 | | > #8,-0.67786,-0.63134,0.37673,236.54,0.73318,-0.61845,0.2828,370.7,0.054444,0.4679,0.8821,277.28> |
| 5393 | | > view matrix models |
| 5394 | | > #8,-0.67786,-0.63134,0.37673,237.48,0.73318,-0.61845,0.2828,372,0.054444,0.4679,0.8821,282.61> |
| 5395 | | > view matrix models |
| 5396 | | > #8,-0.67786,-0.63134,0.37673,228.93,0.73318,-0.61845,0.2828,361.57,0.054444,0.4679,0.8821,272.74> |
| 5397 | | > view matrix models |
| 5398 | | > #8,-0.67786,-0.63134,0.37673,224.08,0.73318,-0.61845,0.2828,375.92,0.054444,0.4679,0.8821,277.88> |
| 5399 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q5XJY5 |
| 5400 | | > (#8) to map postprocess.mrc (#1) using 2014 atoms |
| 5401 | | average map value = 0.006786, steps = 148 |
| 5402 | | shifted from previous position = 20.6 |
| 5403 | | rotated from previous position = 27.6 degrees |
| 5404 | | atoms outside contour = 1529, contour level = 0.0098043 |
| 5405 | | |
| 5406 | | > view matrix models |
| 5407 | | > #8,-0.67786,-0.63134,0.37673,220.78,0.73318,-0.61845,0.2828,377.23,0.054444,0.4679,0.8821,296.19> |
| 5408 | | > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q5XJY5 |
| 5409 | | > (#8) to map postprocess.mrc (#1) using 2014 atoms |
| 5410 | | average map value = 0.006638, steps = 104 |
| 5411 | | shifted from previous position = 13.8 |
| 5412 | | rotated from previous position = 12.7 degrees |
| 5413 | | atoms outside contour = 1535, contour level = 0.0098043 |
| 5414 | | |
| 5415 | | > view matrix models |
| 5416 | | > #8,-0.67786,-0.63134,0.37673,220.41,0.73318,-0.61845,0.2828,367.14,0.054444,0.4679,0.8821,309.5> |
| 5417 | | > ui mousemode right "rotate selected models"> view matrix models |
| 5418 | | > #8,-0.60234,-0.16822,0.78031,220.15,-0.17007,-0.92805,-0.33135,351.59,0.77991,-0.33229,0.5304,325.75> |
| 5419 | | > view matrix models |
| 5420 | | > #8,-0.56665,-0.21292,0.79597,220.93,-0.31574,-0.83618,-0.44845,348.69,0.76106,-0.50543,0.4066,326.01> |
| 5421 | | > view matrix models |
| 5422 | | > #8,-0.80177,-0.30588,0.51343,217.02,0.098336,-0.91491,-0.3915,356.65,0.58949,-0.26341,0.76362,321.78> |
| 5423 | | > open 5nzr5nzr title: |
| 5424 | | The structure of the COPI coat leaf [more info...] |
| 5425 | | |
| 5426 | | | Chain information for 5nzr #12 |
| 5427 | | --- |
| 5428 | | Chain | Description | UniProt |
| 5429 | | A | Coatomer subunit alpha | COPA_MOUSE 1-1224 |
| 5430 | | B | Coatomer subunit beta | COPB_MOUSE 16-968 |
| 5431 | | C | Coatomer subunit beta' | COPB2_MOUSE 1-905 |
| 5432 | | D | Coatomer subunit delta | COPD_MOUSE 1-511 |
| 5433 | | F M R | ADP-ribosylation factor 1 | ARF1_YEAST 1-181 |
| 5434 | | G K | Coatomer subunit gamma-1 | COPG1_MOUSE 1-874 |
| 5435 | | L Z | Coatomer subunit zeta-1 | COPZ1_MOUSE 1-177 |
| 5436 | | |
| 5437 | | |
| 5438 | | > hide #8 models |
| 5439 | | |
| 5440 | | > select add #12 |
| 5441 | | |
| 5442 | | 20984 atoms, 21006 bonds, 7 pseudobonds, 5001 residues, 3 models selected |
| 5443 | | |
| 5444 | | > rainbow sel & #!12 |
| 5445 | | |
| 5446 | | > hide sel & #!12 atoms |
| 5447 | | |
| 5448 | | > show sel & #!12 cartoons |
| 5449 | | |
| 5450 | | > view matrix models |
| 5451 | | > #8,-0.64994,0.65231,0.38997,-81.046,-0.44881,-0.74353,0.49572,377.96,0.61331,0.14717,0.77601,199.42,#12,0.52179,-0.81339,-0.25717,178.56,0.84178,0.44205,0.30983,-62.075,-0.13833,-0.37814,0.91535,69.76 |
| 5452 | | |
| 5453 | | > ui mousemode right "translate selected models" |
| 5454 | | |
| 5455 | | > view matrix models |
| 5456 | | > #8,-0.64994,0.65231,0.38997,141.42,-0.44881,-0.74353,0.49572,557.2,0.61331,0.14717,0.77601,304.75,#12,0.52179,-0.81339,-0.25717,401.02,0.84178,0.44205,0.30983,117.16,-0.13833,-0.37814,0.91535,175.1 |
| 5457 | | |
| 5458 | | > ui mousemode right "rotate selected models" |
| 5459 | | |
| 5460 | | > view matrix models |
| 5461 | | > #8,-0.38397,-0.58767,-0.71219,403.83,0.75014,0.2512,-0.61171,192.35,0.53839,-0.76911,0.34438,528.33,#12,0.12195,0.77873,-0.61539,297.65,-0.99234,0.083426,-0.091086,407.27,-0.019592,0.62179,0.78294,58.888 |
| 5462 | | |
| 5463 | | > view matrix models |
| 5464 | | > #8,0.44702,-0.57148,-0.68817,450.81,0.39074,0.81679,-0.42447,20.948,0.80467,-0.079146,0.58843,362.7,#12,-0.53693,0.83623,-0.11145,304.96,-0.78106,-0.54268,-0.30895,483.41,-0.31883,-0.078831,0.94453,156.08 |
| 5465 | | |
| 5466 | | > view matrix models |
| 5467 | | > #8,0.54098,-0.32184,-0.77702,369.6,0.15438,0.94619,-0.28442,-15.762,0.82675,0.033909,0.56155,326.3,#12,-0.73424,0.65186,-0.18968,357.49,-0.55923,-0.73914,-0.37542,490.02,-0.38492,-0.16957,0.90724,178.39 |
| 5468 | | |
| 5469 | | > view matrix models |
| 5470 | | > #8,0.4776,-0.51082,-0.71482,430.93,0.33258,0.85817,-0.39106,8.8775,0.8132,-0.050961,0.57975,353.57,#12,-0.59368,0.79417,-0.12976,318.28,-0.72993,-0.59934,-0.32862,486.79,-0.33875,-0.10038,0.93551,161.86 |
| 5471 | | |
| 5472 | | > ui mousemode right "translate selected models" |
| 5473 | | |
| 5474 | | > view matrix models |
| 5475 | | > #8,0.4776,-0.51082,-0.71482,482.75,0.33258,0.85817,-0.39106,39.498,0.8132,-0.050961,0.57975,377.3,#12,-0.59368,0.79417,-0.12976,370.1,-0.72993,-0.59934,-0.32862,517.41,-0.33875,-0.10038,0.93551,185.59 |
| 5476 | | |
| 5477 | | > view matrix models |
| 5478 | | > #8,0.4776,-0.51082,-0.71482,473.46,0.33258,0.85817,-0.39106,77.071,0.8132,-0.050961,0.57975,460.12,#12,-0.59368,0.79417,-0.12976,360.82,-0.72993,-0.59934,-0.32862,554.98,-0.33875,-0.10038,0.93551,268.42 |
| 5479 | | |
| 5480 | | > view matrix models |
| 5481 | | > #8,0.4776,-0.51082,-0.71482,415.29,0.33258,0.85817,-0.39106,47.406,0.8132,-0.050961,0.57975,495.54,#12,-0.59368,0.79417,-0.12976,302.64,-0.72993,-0.59934,-0.32862,525.32,-0.33875,-0.10038,0.93551,303.83 |
| 5482 | | |
| 5483 | | > view matrix models |
| 5484 | | > #8,0.4776,-0.51082,-0.71482,415.6,0.33258,0.85817,-0.39106,48.007,0.8132,-0.050961,0.57975,495.11,#12,-0.59368,0.79417,-0.12976,302.95,-0.72993,-0.59934,-0.32862,525.92,-0.33875,-0.10038,0.93551,303.41 |
| 5485 | | |
| 5486 | | > view matrix models |
| 5487 | | > #8,0.4776,-0.51082,-0.71482,419.97,0.33258,0.85817,-0.39106,44.047,0.8132,-0.050961,0.57975,508.07,#12,-0.59368,0.79417,-0.12976,307.33,-0.72993,-0.59934,-0.32862,521.96,-0.33875,-0.10038,0.93551,316.36 |
| 5488 | | |
| 5489 | | > ui mousemode right "rotate selected models" |
| 5490 | | |
| 5491 | | > view matrix models |
| 5492 | | > #8,0.29304,-0.92622,-0.23718,592.8,0.49296,0.35892,-0.79257,157.89,0.81922,0.11534,0.56176,455.55,#12,-0.073413,0.96907,0.2356,187.3,-0.91195,0.030392,-0.40917,476.63,-0.40368,-0.24489,0.88152,346.85 |
| 5493 | | |
| 5494 | | > view matrix models |
| 5495 | | > #8,0.39675,-0.37422,-0.83818,358.81,0.45925,0.87155,-0.17173,73.623,0.79478,-0.3168,0.51765,580.67,#12,-0.63398,0.70954,-0.3076,342.32,-0.72297,-0.68499,-0.08998,503.78,-0.27455,0.16534,0.94725,276.48 |
| 5496 | | |
| 5497 | | > view matrix models |
| 5498 | | > #8,0.50375,-0.66794,-0.5478,489.38,0.5286,0.73991,-0.41608,88.71,0.68324,-0.079968,0.7258,526.68,#12,-0.48084,0.87511,0.054582,264.06,-0.86376,-0.46207,-0.20102,505.65,-0.15069,-0.1438,0.97807,295.95 |
| 5499 | | |
| 5500 | | > view matrix models |
| 5501 | | > #8,0.1025,-0.67908,-0.72687,447.72,0.73567,0.54358,-0.4041,162.25,0.66953,-0.49332,0.5553,631.62,#12,-0.24766,0.91595,-0.31575,276.4,-0.96359,-0.26678,-0.018091,472.34,-0.10081,0.29977,0.94867,241.32 |
| 5502 | | |
| 5503 | | > view matrix models |
| 5504 | | > #8,0.685,-0.70374,-0.18846,553.89,0.65744,0.70857,-0.25632,124.94,0.31392,0.051678,0.94804,491.25,#12,-0.43071,0.78501,0.44526,224.12,-0.87545,-0.48328,0.0051794,485.63,0.21925,-0.38757,0.89539,293.78 |
| 5505 | | |
| 5506 | | > view matrix models |
| 5507 | | > #8,0.75433,-0.6511,-0.083978,554.39,0.60264,0.73751,-0.30482,107.09,0.2604,0.17933,0.9487,449.23,#12,-0.44876,0.70275,0.55205,223.51,-0.86526,-0.49615,-0.071779,494.92,0.22346,-0.50988,0.83072,315.27 |
| 5508 | | |
| 5509 | | > fitmap sel inMap #1 |
| 5510 | | |
| 5511 | | Fit molecules AlphaFold Q5XJY5 (#8), 5nzr (#12) to map postprocess.mrc (#1) |
| 5512 | | using 20984 atoms |
| 5513 | | average map value = 0.00986, steps = 348 |
| 5514 | | shifted from previous position = 33.8 |
| 5515 | | rotated from previous position = 35.7 degrees |
| 5516 | | atoms outside contour = 11489, contour level = 0.0098043 |
| 5517 | | |
| 5518 | | Position of AlphaFold Q5XJY5 (#8) relative to postprocess.mrc (#1) |
| 5519 | | coordinates: |
| 5520 | | Matrix rotation and translation |
| 5521 | | 0.49299499 -0.60059429 -0.62947792 453.02472673 |
| 5522 | | 0.62412801 0.74820379 -0.22506737 108.04034281 |
| 5523 | | 0.60615194 -0.28191772 0.74370843 551.83093680 |
| 5524 | | Axis -0.03265990 -0.70985575 0.70358947 |
| 5525 | | Axis point -190.29422483 0.00000000 888.35117527 |
| 5526 | | Rotation angle (degrees) 60.49802227 |
| 5527 | | Shift along axis 296.77363624 |
| 5528 | | |
| 5529 | | Position of 5nzr (#12) relative to postprocess.mrc (#1) coordinates: |
| 5530 | | Matrix rotation and translation |
| 5531 | | -0.53474921 0.84440971 -0.03186735 278.17462040 |
| 5532 | | -0.84482079 -0.53504839 -0.00102956 482.54311095 |
| 5533 | | -0.01791995 0.02637164 0.99949158 224.70041209 |
| 5534 | | Axis 0.01621843 -0.00825529 -0.99983439 |
| 5535 | | Axis point 273.18809601 162.79475561 0.00000000 |
| 5536 | | Rotation angle (degrees) 122.35428873 |
| 5537 | | Shift along axis -224.13517875 |
| 5538 | | |
| 5539 | | |
| 5540 | | > select clear |
| 5541 | | |
| 5542 | | > show #8 models |
| 5543 | | |
| 5544 | | > hide #8 models |
| 5545 | | |
| 5546 | | > show #!9 models |
| 5547 | | |
| 5548 | | > hide #!9 models |
| 5549 | | |
| 5550 | | > show #10 models |
| 5551 | | |
| 5552 | | > hide #10 models |
| 5553 | | |
| 5554 | | > show #6 models |
| 5555 | | |
| 5556 | | > hide #6 models |
| 5557 | | |
| 5558 | | > show #5 models |
| 5559 | | |
| 5560 | | > hide #!12 models |
| 5561 | | |
| 5562 | | > show #!12 models |
| 5563 | | |
| 5564 | | > hide #!12 models |
| 5565 | | |
| 5566 | | > select #5:257-1000 |
| 5567 | | |
| 5568 | | 5433 atoms, 5510 bonds, 697 residues, 1 model selected |
| 5569 | | |
| 5570 | | > select #5:50-100 |
| 5571 | | |
| 5572 | | 415 atoms, 424 bonds, 51 residues, 1 model selected |
| 5573 | | |
| 5574 | | > select #5:678-1000 |
| 5575 | | |
| 5576 | | 2123 atoms, 2157 bonds, 276 residues, 1 model selected |
| 5577 | | |
| 5578 | | > select #5:673-1000 |
| 5579 | | |
| 5580 | | 2166 atoms, 2201 bonds, 281 residues, 1 model selected |
| 5581 | | |
| 5582 | | > fitmap sel inMap #1 moveWholeMolecules false |
| 5583 | | |
| 5584 | | Fit molecule bcop Q9JIF7 (#5) to map postprocess.mrc (#1) using 2166 atoms |
| 5585 | | average map value = 0.006375, steps = 144 |
| 5586 | | shifted from previous position = 6.2 |
| 5587 | | rotated from previous position = 29 degrees |
| 5588 | | atoms outside contour = 1554, contour level = 0.0098043 |
| 5589 | | |
| 5590 | | |
| 5591 | | > undo |
| 5592 | | |
| 5593 | | > ui mousemode right "translate selected atoms" |
| 5594 | | |
| 5595 | | > fitmap sel inMap #1 moveWholeMolecules false |
| 5596 | | |
| 5597 | | Fit molecule bcop Q9JIF7 (#5) to map postprocess.mrc (#1) using 2123 atoms |
| 5598 | | average map value = 0.007053, steps = 96 |
| 5599 | | shifted from previous position = 18.7 |
| 5600 | | rotated from previous position = 20.8 degrees |
| 5601 | | atoms outside contour = 1515, contour level = 0.0098043 |
| 5602 | | |
| 5603 | | |
| 5604 | | > fitmap sel inMap #1 moveWholeMolecules false |
| 5605 | | |
| 5606 | | Fit molecule bcop Q9JIF7 (#5) to map postprocess.mrc (#1) using 2123 atoms |
| 5607 | | average map value = 0.008288, steps = 120 |
| 5608 | | shifted from previous position = 5.52 |
| 5609 | | rotated from previous position = 36.8 degrees |
| 5610 | | atoms outside contour = 1297, contour level = 0.0098043 |
| 5611 | | |
| 5612 | | |
| 5613 | | > show #!12 models |
| 5614 | | |
| 5615 | | > volume #1 level 0.007653 |
| 5616 | | |
| 5617 | | > hide #!12 models |
| 5618 | | |
| 5619 | | > show #4 models |
| 5620 | | |
| 5621 | | > show #3 models |
| 5622 | | |
| 5623 | | > show #6 models |
| 5624 | | |
| 5625 | | > show #7 models |
| 5626 | | |
| 5627 | | > show #8 models |
| 5628 | | |
| 5629 | | > show #!9 models |
| 5630 | | |
| 5631 | | > show #10 models |
| 5632 | | |
| 5633 | | > show #11 models |
| 5634 | | |
| 5635 | | > select clear |
| 5636 | | |
| 5637 | | [Repeated 2 time(s)]Drag select of 160 residues |
| 5638 | | |
| 5639 | | > select add #8 |
| 5640 | | |
| 5641 | | 4014 atoms, 4083 bonds, 511 residues, 1 model selected |
| 5642 | | |
| 5643 | | > ui mousemode right "move picked models" |
| 5644 | | |
| 5645 | | > ui mousemode right "rotate selected models" |
| 5646 | | |
| 5647 | | > view matrix models |
| 5648 | | > #8,0.52203,0.85231,0.032475,68.046,-0.46112,0.25,0.85139,238.43,0.71753,-0.45943,0.52352,599.04 |
| 5649 | | |
| 5650 | | > view matrix models |
| 5651 | | > #8,0.52016,0.85303,0.042083,68.629,-0.48056,0.25159,0.8401,234.03,0.70604,-0.45721,0.5408,598.69 |
| 5652 | | |
| 5653 | | > view matrix models |
| 5654 | | > #8,0.051357,0.99444,0.091954,-34.655,-0.5072,-0.053346,0.86018,329.69,0.8603,-0.090815,0.50164,498.72 |
| 5655 | | |
| 5656 | | > view matrix models |
| 5657 | | > #8,-0.30688,0.94053,0.14568,-60.294,-0.90559,-0.33565,0.25931,298.59,0.29279,-0.05235,0.95474,459.54 |
| 5658 | | |
| 5659 | | > view matrix models |
| 5660 | | > #8,-0.31349,0.94827,-0.050019,-85.39,-0.91245,-0.28622,0.29243,285.6,0.26299,0.13731,0.95498,395.14 |
| 5661 | | |
| 5662 | | > view matrix models |
| 5663 | | > #8,-0.39059,0.91742,-0.076076,-88.957,-0.91913,-0.39326,-0.023448,283.68,-0.051429,0.060765,0.99683,381.36 |
| 5664 | | |
| 5665 | | > view matrix models |
| 5666 | | > #8,-0.36375,0.9173,-0.16202,-94.81,-0.92881,-0.37037,-0.011636,276.39,-0.070681,0.14625,0.98672,350.41 |
| 5667 | | |
| 5668 | | > ui mousemode right "translate selected models" |
| 5669 | | |
| 5670 | | > view matrix models |
| 5671 | | > #8,-0.36375,0.9173,-0.16202,-96.715,-0.92881,-0.37037,-0.011636,304.42,-0.070681,0.14625,0.98672,364.98 |
| 5672 | | |
| 5673 | | > ui mousemode right "rotate selected models" |
| 5674 | | |
| 5675 | | > view matrix models |
| 5676 | | > #8,0.13102,0.98728,0.090013,-23.655,-0.95349,0.10063,0.28411,183.99,0.27144,-0.12305,0.95456,493.69 |
| 5677 | | |
| 5678 | | > ui mousemode right "translate selected models" |
| 5679 | | |
| 5680 | | > view matrix models |
| 5681 | | > #8,0.13102,0.98728,0.090013,-36.779,-0.95349,0.10063,0.28411,181.38,0.27144,-0.12305,0.95456,500.49 |
| 5682 | | |
| 5683 | | > select #8:673-1000 |
| 5684 | | |
| 5685 | | Nothing selected |
| 5686 | | |
| 5687 | | > select #8:1-255 |
| 5688 | | |
| 5689 | | 1991 atoms, 2019 bonds, 255 residues, 1 model selected |
| 5690 | | |
| 5691 | | > ui tool show "Fit in Map" |
| 5692 | | |
| 5693 | | > fitmap sel inMap #1 |
| 5694 | | |
| 5695 | | Fit molecule AlphaFold Q5XJY5 (#8) to map postprocess.mrc (#1) using 1991 |
| 5696 | | atoms |
| 5697 | | average map value = 0.006643, steps = 256 |
| 5698 | | shifted from previous position = 15.1 |
| 5699 | | rotated from previous position = 47 degrees |
| 5700 | | atoms outside contour = 1304, contour level = 0.0076533 |
| 5701 | | |
| 5702 | | Position of AlphaFold Q5XJY5 (#8) relative to postprocess.mrc (#1) |
| 5703 | | coordinates: |
| 5704 | | Matrix rotation and translation |
| 5705 | | -0.62548770 0.77964233 0.03038068 -69.32003114 |
| 5706 | | -0.77483337 -0.62526057 0.09317979 432.54139912 |
| 5707 | | 0.09164275 0.03474284 0.99518569 432.15915881 |
| 5708 | | Axis -0.03753707 -0.03935179 -0.99852011 |
| 5709 | | Axis point 56.58688874 228.36184294 0.00000000 |
| 5710 | | Rotation angle (degrees) 128.88661905 |
| 5711 | | Shift along axis -445.93881773 |
| 5712 | | |
| 5713 | | |
| 5714 | | > view matrix models |
| 5715 | | > #8,-0.62549,0.77964,0.030381,-56.649,-0.77483,-0.62526,0.09318,422.08,0.091643,0.034743,0.99519,440.99 |
| 5716 | | |
| 5717 | | > ui mousemode right "rotate selected models" |
| 5718 | | |
| 5719 | | > view matrix models |
| 5720 | | > #8,0.22073,0.97526,0.012319,-5.7316,-0.85987,0.18862,0.47439,193.79,0.46033,-0.1153,0.88023,526.17 |
| 5721 | | |
| 5722 | | > view matrix models |
| 5723 | | > #8,0.15542,0.98522,-0.072084,-27.163,-0.86472,0.17096,0.47226,198.51,0.4776,-0.011065,0.87851,495.15 |
| 5724 | | |
| 5725 | | > view matrix models |
| 5726 | | > #8,0.26671,0.96245,0.050607,8.856,-0.87241,0.21877,0.43708,178.34,0.4096,-0.16072,0.898,535.69 |
| 5727 | | |
| 5728 | | > ui mousemode right "translate selected models" |
| 5729 | | |
| 5730 | | > view matrix models |
| 5731 | | > #8,0.26671,0.96245,0.050607,7.313,-0.87241,0.21877,0.43708,169.87,0.4096,-0.16072,0.898,525 |
| 5732 | | |
| 5733 | | > view matrix models |
| 5734 | | > #8,0.26671,0.96245,0.050607,-10.046,-0.87241,0.21877,0.43708,167.9,0.4096,-0.16072,0.898,531.38 |
| 5735 | | |
| 5736 | | > view matrix models |
| 5737 | | > #8,0.26671,0.96245,0.050607,-11.003,-0.87241,0.21877,0.43708,173.12,0.4096,-0.16072,0.898,531.71 |
| 5738 | | |
| 5739 | | > ui mousemode right "move picked models" |
| 5740 | | |
| 5741 | | > ui mousemode right "rotate selected models" |
| 5742 | | |
| 5743 | | [Repeated 1 time(s)] |
| 5744 | | |
| 5745 | | > view matrix models |
| 5746 | | > #8,-0.10602,0.99339,-0.044085,-82.1,-0.98768,-0.10007,0.12027,223.73,0.11506,0.056293,0.99176,432.96 |
| 5747 | | |
| 5748 | | > view matrix models |
| 5749 | | > #8,0.052591,0.99338,-0.10211,-66.953,-0.99323,0.062639,0.097836,168.7,0.10358,0.096275,0.98995,418.47 |
| 5750 | | |
| 5751 | | > ui mousemode right "translate selected models" |
| 5752 | | |
| 5753 | | > view matrix models |
| 5754 | | > #8,0.052591,0.99338,-0.10211,-66.631,-0.99323,0.062639,0.097836,178.27,0.10358,0.096275,0.98995,414.29 |
| 5755 | | |
| 5756 | | > view matrix models |
| 5757 | | > #8,0.052591,0.99338,-0.10211,-68.517,-0.99323,0.062639,0.097836,176.92,0.10358,0.096275,0.98995,415.64 |
| 5758 | | |
| 5759 | | > ui mousemode right "rotate selected models" |
| 5760 | | |
| 5761 | | > view matrix models |
| 5762 | | > #8,-0.030369,0.96092,-0.27516,-88.694,-0.97222,0.03552,0.23135,203.23,0.23208,0.27454,0.93315,370.08 |
| 5763 | | |
| 5764 | | > view matrix models |
| 5765 | | > #8,0.030946,0.98758,-0.15403,-75.383,-0.98929,0.052261,0.13632,185.03,0.14268,0.14817,0.97862,403.19 |
| 5766 | | |
| 5767 | | > view matrix models |
| 5768 | | > #8,0.040371,0.9904,-0.13218,-72.571,-0.99117,0.056413,0.11997,181.64,0.12627,0.12617,0.98394,408.55 |
| 5769 | | |
| 5770 | | > view matrix models |
| 5771 | | > #8,0.30426,0.95155,0.044526,-4.6598,-0.92561,0.28428,0.24988,132.46,0.22511,-0.11724,0.96725,497.63 |
| 5772 | | |
| 5773 | | > fitmap sel inMap #1 |
| 5774 | | |
| 5775 | | Fit molecule AlphaFold Q5XJY5 (#8) to map postprocess.mrc (#1) using 1991 |
| 5776 | | atoms |
| 5777 | | average map value = 0.006936, steps = 372 |
| 5778 | | shifted from previous position = 4.52 |
| 5779 | | rotated from previous position = 23.4 degrees |
| 5780 | | atoms outside contour = 1277, contour level = 0.0076533 |
| 5781 | | |
| 5782 | | Position of AlphaFold Q5XJY5 (#8) relative to postprocess.mrc (#1) |
| 5783 | | coordinates: |
| 5784 | | Matrix rotation and translation |
| 5785 | | -0.04305036 0.99254206 0.11404797 -52.98885446 |
| 5786 | | -0.90935144 -0.08620824 0.40699890 271.42760552 |
| 5787 | | 0.41379540 -0.08618823 0.90628084 502.96547353 |
| 5788 | | Axis -0.24814055 -0.15081394 -0.95691244 |
| 5789 | | Axis point -0.77179557 179.84860224 0.00000000 |
| 5790 | | Rotation angle (degrees) 96.40115017 |
| 5791 | | Shift along axis -509.08030191 |
| 5792 | | |
| 5793 | | |
| 5794 | | > select #8:255-1000 |
| 5795 | | |
| 5796 | | 2027 atoms, 2067 bonds, 257 residues, 1 model selected |
| 5797 | | |
| 5798 | | > delete sel |
| 5799 | | |
| 5800 | | > select #8:180-1000 |
| 5801 | | |
| 5802 | | 525 atoms, 533 bonds, 75 residues, 1 model selected |
| 5803 | | |
| 5804 | | > select up |
| 5805 | | |
| 5806 | | 556 atoms, 564 bonds, 79 residues, 1 model selected |
| 5807 | | |
| 5808 | | > select down |
| 5809 | | |
| 5810 | | 525 atoms, 533 bonds, 75 residues, 1 model selected |
| 5811 | | |
| 5812 | | > delete sel |
| 5813 | | |
| 5814 | | > save /fs/gpfs41/lv09/fileset01/pool/pool- |
| 5815 | | > briggs/tagiltsev/warp_4becca/alphafold_copi_gt2.cxs |
| 5816 | | |
| 5817 | | > save /fs/gpfs41/lv09/fileset01/pool/pool- |
| 5818 | | > briggs/tagiltsev/warp_4becca/alphafold_copi_gt2.cxs includeMaps true |
| 5819 | | |
| 5820 | | > select add #3 |
| 5821 | | |
| 5822 | | 9810 atoms, 10032 bonds, 1233 residues, 1 model selected |
| 5823 | | |
| 5824 | | > color #3 blue |
| 5825 | | |
| 5826 | | > select subtract #3 |
| 5827 | | |
| 5828 | | Nothing selected |
| 5829 | | |
| 5830 | | > select add #4 |
| 5831 | | |
| 5832 | | 7214 atoms, 7373 bonds, 905 residues, 1 model selected |
| 5833 | | |
| 5834 | | > color #4 cyan |
| 5835 | | |
| 5836 | | > select clear |
| 5837 | | |
| 5838 | | > select add #5 |
| 5839 | | |
| 5840 | | 7501 atoms, 7619 bonds, 953 residues, 1 model selected |
| 5841 | | |
| 5842 | | > color #5 #005500ff |
| 5843 | | |
| 5844 | | > select subtract #5 |
| 5845 | | |
| 5846 | | Nothing selected |
| 5847 | | |
| 5848 | | > select add #6 |
| 5849 | | |
| 5850 | | 1457 atoms, 1483 bonds, 181 residues, 1 model selected |
| 5851 | | |
| 5852 | | > color #6 #ff557fff |
| 5853 | | |
| 5854 | | > select add #7 |
| 5855 | | |
| 5856 | | 2914 atoms, 2966 bonds, 362 residues, 2 models selected |
| 5857 | | |
| 5858 | | > select subtract #6 |
| 5859 | | |
| 5860 | | 1457 atoms, 1483 bonds, 181 residues, 1 model selected |
| 5861 | | |
| 5862 | | > color #7 #ffaaffff |
| 5863 | | |
| 5864 | | > select clear |
| 5865 | | |
| 5866 | | > color #7 #ff557fff |
| 5867 | | |
| 5868 | | > select add #8 |
| 5869 | | |
| 5870 | | 1462 atoms, 1481 bonds, 179 residues, 1 model selected |
| 5871 | | |
| 5872 | | > color #8 #aa5500ff |
| 5873 | | |
| 5874 | | > select subtract #8 |
| 5875 | | |
| 5876 | | Nothing selected |
| 5877 | | |
| 5878 | | > select add #9 |
| 5879 | | |
| 5880 | | 6673 atoms, 6786 bonds, 1 pseudobond, 853 residues, 2 models selected |
| 5881 | | |
| 5882 | | > select add #8 |
| 5883 | | |
| 5884 | | 8135 atoms, 8267 bonds, 1 pseudobond, 1032 residues, 3 models selected |
| 5885 | | |
| 5886 | | > select subtract #9 |
| 5887 | | |
| 5888 | | 1462 atoms, 1481 bonds, 179 residues, 1 model selected |
| 5889 | | |
| 5890 | | > select subtract #8 |
| 5891 | | |
| 5892 | | Nothing selected |
| 5893 | | |
| 5894 | | > select add #9 |
| 5895 | | |
| 5896 | | 6673 atoms, 6786 bonds, 1 pseudobond, 853 residues, 2 models selected |
| 5897 | | |
| 5898 | | > select add #8 |
| 5899 | | |
| 5900 | | 8135 atoms, 8267 bonds, 1 pseudobond, 1032 residues, 3 models selected |
| 5901 | | |
| 5902 | | > select subtract #8 |
| 5903 | | |
| 5904 | | 6673 atoms, 6786 bonds, 1 pseudobond, 853 residues, 2 models selected |
| 5905 | | |
| 5906 | | > color #9 #55ff00ff |
| 5907 | | |
| 5908 | | > select subtract #9 |
| 5909 | | |
| 5910 | | Nothing selected |
| 5911 | | |
| 5912 | | > select add #10 |
| 5913 | | |
| 5914 | | 1420 atoms, 1441 bonds, 177 residues, 1 model selected |
| 5915 | | |
| 5916 | | > color #10 yellow |
| 5917 | | |
| 5918 | | > color #10 #ffff7fff |
| 5919 | | |
| 5920 | | > color #10 yellow |
| 5921 | | |
| 5922 | | > color #9 lime |
| 5923 | | |
| 5924 | | > select subtract #10 |
| 5925 | | |
| 5926 | | Nothing selected |
| 5927 | | |
| 5928 | | > select add #11 |
| 5929 | | |
| 5930 | | 2367 atoms, 2398 bonds, 298 residues, 1 model selected |
| 5931 | | |
| 5932 | | > color #11 #aa00ffff |
| 5933 | | |
| 5934 | | > show #!2 models |
| 5935 | | |
| 5936 | | > hide #!2 models |
| 5937 | | |
| 5938 | | > select clear |
| 5939 | | |
| 5940 | | > close #12 |
| 5941 | | |
| 5942 | | > save /fs/gpfs41/lv09/fileset01/pool/pool- |
| 5943 | | > briggs/tagiltsev/warp_4becca/alphafold_copi_gt3.cxs includeMaps true |
| 5944 | | |
| 5945 | | > ui tool show AlphaFold |
| 5946 | | |
| 5947 | | > alphafold match P84078 |
| 5948 | | |
| 5949 | | 1 AlphaFold model found using UniProt identifier: P84078 (UniProt P84078) |
| 5950 | | Sequence Similarity |
| 5951 | | --- |
| 5952 | | AlphaFold Model| Query Sequence| Identity %| Coverage % |
| 5953 | | P84078 | P84078 | 100.0 | 100.0 |
| 5954 | | Opened 1 AlphaFold model |
| 5955 | | > select add #121457 atoms, 1483 bonds, 181 residues, 1 model selected |
| 5956 | | > view matrix models |
| 5957 | | > #12,0.99732,0.03037,-0.066609,0.14664,-0.041627,0.98373,-0.17474,1.1913,0.060218,0.17704,0.98236,-1.382> |
| 5958 | | > ui mousemode right "translate selected models"> view matrix models |
| 5959 | | > #12,0.99732,0.03037,-0.066609,192.14,-0.041627,0.98373,-0.17474,369.59,0.060218,0.17704,0.98236,287.78> |
| 5960 | | > view matrix models |
| 5961 | | > #12,0.99732,0.03037,-0.066609,244.52,-0.041627,0.98373,-0.17474,330.85,0.060218,0.17704,0.98236,312> |
| 5962 | | > view matrix models |
| 5963 | | > #12,0.99732,0.03037,-0.066609,244.99,-0.041627,0.98373,-0.17474,337.04,0.060218,0.17704,0.98236,281.29> |
| 5964 | | > color #12 #ff5500ff> color #12 #ff557fff> ui mousemode right "rotate |
| 5965 | | > selected models"> view matrix models |
| 5966 | | > #12,0.96921,-0.057544,-0.23943,246.84,-0.16396,0.57464,-0.80181,344.51,0.18372,0.81638,0.54751,278.51> |
| 5967 | | > view matrix models |
| 5968 | | > #12,-0.66037,0.0084873,-0.7509,246.84,0.10956,0.99033,-0.085153,336.65,0.74291,-0.1385,-0.65491,295.68> |
| 5969 | | > view matrix models |
| 5970 | | > #12,-0.81274,0.36614,-0.45321,241.48,0.50848,0.8255,-0.24496,339.8,0.28444,-0.42953,-0.85709,298.83> |
| 5971 | | > view matrix models |
| 5972 | | > #12,-0.711,0.49496,-0.49949,240.78,0.70072,0.55818,-0.44432,343.79,0.058885,-0.66592,-0.7437,299.87> |
| 5973 | | > view matrix models |
| 5974 | | > #12,-0.69871,0.42186,-0.57778,241.96,0.65547,0.70109,-0.28076,341.39,0.28664,-0.57489,-0.76638,299.57> |
| 5975 | | > ui mousemode right "translate selected models"> view matrix models |
| 5976 | | > #12,-0.69871,0.42186,-0.57778,246.79,0.65547,0.70109,-0.28076,352.02,0.28664,-0.57489,-0.76638,288.94> |
| 5977 | | > ui mousemode right "rotate selected models"> view matrix models |
| 5978 | | > #12,-0.59293,0.10513,-0.79836,251.22,0.64323,0.6583,-0.39103,353.09,0.48445,-0.74538,-0.45795,288.83> |
| 5979 | | > view matrix models |
| 5980 | | > #12,-0.68781,0.25488,-0.67967,248.96,0.69867,-0.021515,-0.71512,361.36,-0.19689,-0.96673,-0.16328,287.83> |
| 5981 | | > view matrix models |
| 5982 | | > #12,-0.70244,0.38024,-0.60167,247.31,0.48017,-0.37083,-0.79494,364.65,-0.52538,-0.84729,0.077904,284.68> |
| 5983 | | > view matrix models |
| 5984 | | > #12,-0.76601,0.36378,-0.53,246.9,0.54444,-0.071237,-0.83577,362.32,-0.34179,-0.92876,-0.14349,287.13> |
| 5985 | | > ui mousemode right "rotate selected models"> view matrix models |
| 5986 | | > #12,-0.84687,0.36676,-0.38509,245.82,0.45782,0.13437,-0.87883,360.6,-0.27058,-0.92056,-0.28171,288.05> |
| 5987 | | > view matrix models |
| 5988 | | > #12,-0.76349,0.20858,-0.6112,248.81,0.6457,0.26411,-0.71646,358.71,0.011989,-0.94167,-0.33633,289.05> |
| 5989 | | > ui mousemode right "translate selected models"> fitmap sel inMap #1Fit |
| 5990 | | > molecule AlphaFold P84078 (#12) to map postprocess.mrc (#1) using 1457 atoms |
| 5991 | | average map value = 0.006393, steps = 76 |
| 5992 | | shifted from previous position = 8.87 |
| 5993 | | rotated from previous position = 15.9 degrees |
| 5994 | | atoms outside contour = 1045, contour level = 0.0076533 |
| 5995 | | |
| 5996 | | Position of AlphaFold P84078 (#12) relative to postprocess.mrc (#1) |
| 5997 | | coordinates: |
| 5998 | | Matrix rotation and translation |
| 5999 | | -0.74110472 0.25780732 -0.61991868 250.25747317 |
| 6000 | | 0.64078173 -0.00400708 -0.76771265 351.24260378 |
| 6001 | | -0.20040600 -0.96618804 -0.16222856 290.85088224 |
| 6002 | | Axis -0.32985322 -0.69720285 0.63647862 |
| 6003 | | Axis point -0.08358810 0.00000000 328.20413989 |
| 6004 | | Rotation angle (degrees) 162.49109040 |
| 6005 | | Shift along axis -142.31520995 |
| 6006 | | |
| 6007 | | > ui mousemode right "rotate selected models"> view matrix models |
| 6008 | | > #12,-0.86938,0.31454,-0.3811,248.02,0.49119,0.46609,-0.73586,346.57,-0.053833,-0.82694,-0.55971,292.37> |
| 6009 | | > view matrix models |
| 6010 | | > #12,-0.79921,0.37642,-0.46858,248.13,0.59483,0.38348,-0.70648,347.29,-0.086243,-0.84336,-0.53039,292.28> |
| 6011 | | > ui mousemode right "translate selected models"> view matrix models |
| 6012 | | > #12,-0.79921,0.37642,-0.46858,247.25,0.59483,0.38348,-0.70648,350.41,-0.086243,-0.84336,-0.53039,291.7> |
| 6013 | | > view matrix models |
| 6014 | | > #12,-0.79921,0.37642,-0.46858,244.11,0.59483,0.38348,-0.70648,350.21,-0.086243,-0.84336,-0.53039,292.13> |
| 6015 | | > ui mousemode right "rotate selected models"> view matrix models |
| 6016 | | > #12,-0.95386,0.24463,-0.17409,243.16,0.25188,0.33633,-0.90743,351.35,-0.16343,-0.90941,-0.38243,291.66> |
| 6017 | | > view matrix models |
| 6018 | | > #12,-0.79001,-0.13282,-0.59854,249.53,0.55952,0.24291,-0.79242,351.96,0.25064,-0.96091,-0.11759,291.11> |
| 6019 | | > view matrix models |
| 6020 | | > #12,-0.67783,0.13357,-0.72298,248.11,0.73388,0.06354,-0.67631,353.12,-0.044396,-0.989,-0.14109,291.03> |
| 6021 | | > select clear> save /fs/gpfs41/lv09/fileset01/pool/pool- |
| 6022 | | > briggs/tagiltsev/warp_4becca/alphafold_copi_gt4.cxs> save |
| 6023 | | > /fs/gpfs41/lv09/fileset01/pool/pool- |
| 6024 | | > briggs/tagiltsev/warp_4becca/alphafold_copi_gt4.cxs includeMaps true> ui |
| 6025 | | > tool show "Color Zone"> select add #39810 atoms, 10032 bonds, 1233 residues, |
| 6026 | | > 1 model selected |
| 6027 | | > select add #417024 atoms, 17405 bonds, 2138 residues, 2 models selected |
| 6028 | | > select add #524525 atoms, 25024 bonds, 3091 residues, 3 models selected |
| 6029 | | > select add #625982 atoms, 26507 bonds, 3272 residues, 4 models selected |
| 6030 | | > select add #727439 atoms, 27990 bonds, 3453 residues, 5 models selected |
| 6031 | | > select add #934112 atoms, 34776 bonds, 1 pseudobond, 4306 residues, 7 models |
| 6032 | | > selected |
| 6033 | | > select add #1136479 atoms, 37174 bonds, 1 pseudobond, 4604 residues, 8 |
| 6034 | | > models selected |
| 6035 | | > select add #1237936 atoms, 38657 bonds, 1 pseudobond, 4785 residues, 9 |
| 6036 | | > models selected |
| 6037 | | > select add #839398 atoms, 40138 bonds, 1 pseudobond, 4964 residues, 10 |
| 6038 | | > models selected |
| 6039 | | > select add #1040818 atoms, 41579 bonds, 1 pseudobond, 5141 residues, 11 |
| 6040 | | > models selected |
| 6041 | | > color zone #1 near sel distance 5> hide #3 models> hide #4 models> hide #5 |
| 6042 | | > models> hide #6 models> hide #7 models> hide #8 models> hide #!9 models> |
| 6043 | | > hide #10 models> hide #11 models> hide #12 models> color zone #1 near sel |
| 6044 | | > distance 300[Repeated 1 time(s)]> color zone #1 near sel distance 160.89> |
| 6045 | | > color zone #1 near sel distance 162.01> color zone #1 near sel distance |
| 6046 | | > 23.73> view matrix models |
| 6047 | | > #3,0.9148,0.37497,0.15015,272.72,-0.20072,0.74462,-0.6366,357.54,-0.35051,0.55222,0.75644,352.79,#4,-0.17501,-0.17837,-0.96827,300.32,-0.011019,-0.98304,0.18308,289.64,-0.98451,0.04271,0.17007,350.81,#5,0.046501,-0.73948,0.67157,285.03,-0.16587,0.65725,0.73519,314.42,-0.98505,-0.14558,-0.092095,347.46,#6,0.13817,0.035476,0.98977,236.96,-0.7229,-0.6795,0.12527,313.55,0.67699,-0.73282,-0.068242,291.07,#7,-0.82079,-0.53173,0.20873,354.89,-0.51806,0.53897,-0.66417,308.12,0.24066,-0.65328,-0.71785,333.36,#8,-0.04305,0.99254,0.11405,-52.989,-0.90935,-0.086208,0.407,271.43,0.4138,-0.086188,0.90628,502.97,#10,0.17048,-0.93854,-0.30012,342.77,-0.36432,0.22296,-0.90419,353.65,0.91554,0.26349,-0.30392,330.16,#9,0.48168,-0.52169,-0.70415,336.01,0.54192,-0.45414,0.70716,394.9,-0.6887,-0.72222,0.063968,371.16,#11,0.64865,-0.27426,0.70995,310.02,-0.71703,-0.53297,0.44923,345.46,0.25518,-0.80045,-0.54236,303.68,#12,-0.67783,0.13357,-0.72298,248.11,0.73388,0.06354,-0.67631,353.12,-0.044396,-0.989,-0.14109,291.03[Repeated |
| 6048 | | > 3 time(s)]> color single #1> color zone #1 near sel distance 4.8> color zone |
| 6049 | | > #1 near sel distance 4> color zone #1 near sel distance 3.17> ui tool show |
| 6050 | | > "Volume Viewer"> volume #1 level 0.009138> color zone #1 near sel distance |
| 6051 | | > 3.17> color zone #1 near sel distance 3.1> color zone #1 near sel distance |
| 6052 | | > 3> color zone #1 near sel distance 3.5> color zone #1 near sel distance 3> |
| 6053 | | > color zone #1 near sel distance 5> color zone #1 near sel distance |
| 6054 | | > 4[Repeated 1 time(s)]> color zone #1 near sel distance 3> color zone #1 near |
| 6055 | | > sel distance 3.5[Repeated 1 time(s)]> save |
| 6056 | | > /fs/gpfs41/lv09/fileset01/pool/pool- |
| 6057 | | > briggs/tagiltsev/warp_4becca/alphafold_copi_gt_colored.cxs includeMaps |
| 6058 | | > true——— End of log from Sun Nov 5 21:56:53 2023 ———opened ChimeraX session |
| 6059 | | > hide #!1 models> show #!1 models> show #3 models> hide #3 models> select add |
| 6060 | | > #240818 atoms, 41579 bonds, 1 pseudobond, 5141 residues, 13 models selected |
| 6061 | | > select subtract #240818 atoms, 41579 bonds, 1 pseudobond, 5141 residues, 11 |
| 6062 | | > models selected |
| 6063 | | > select add #140818 atoms, 41579 bonds, 1 pseudobond, 5141 residues, 13 |
| 6064 | | > models selected |
| 6065 | | > select subtract #140818 atoms, 41579 bonds, 1 pseudobond, 5141 residues, 11 |
| 6066 | | > models selected |
| 6067 | | > select add #240818 atoms, 41579 bonds, 1 pseudobond, 5141 residues, 13 |
| 6068 | | > models selected |
| 6069 | | > select subtract #240818 atoms, 41579 bonds, 1 pseudobond, 5141 residues, 11 |
| 6070 | | > models selected |
| 6071 | | > select add #240818 atoms, 41579 bonds, 1 pseudobond, 5141 residues, 13 |
| 6072 | | > models selected |
| 6073 | | > show #!2 models> hide #!2 models> select subtract #240818 atoms, 41579 |
| 6074 | | > bonds, 1 pseudobond, 5141 residues, 11 models selected |
| 6075 | | > show #6 models> hide #6 models> show #6 models> hide #6 models> show #5 models> hide #5 models> show #6 models> hide #6 models> show #7 models> hide #7 models> show #7 models> show #6 models> hide #6 models> hide #7 models> show #8 models> hide #8 models> show #10 models> hide #10 models> show #10 models> hide #10 models> hide #!1 models> show #4 models> show #3 models> hide #3 models> show #3 models> hide #3 models> hide #4 models> show #4 models> show #7 models> hide #7 models> show #8 models> hide #8 models> show #!9 models> hide #!9 models> show #!9 models> hide #!9 models> show #10 models> hide #10 models> show #11 models> hide #11 models> show #12 models> hide #12 models> hide #4 models> show #3 models> show #4 models> show #5 models> show #!1 models> hide #4 models> hide #5 models> hide #!1 models> show #!1 models> hide #3 models> show #4 models> hide #4 models> show #4 models> hide #4 models> show #4 models> hide #4 models> show #5 models> hide #5 models> show #6 models> hide #6 models> show #7 models> hide #7 models> show #8 models> log metadata #6The model has no metadata> log chains #6 | Chain information for AlphaFold P84078 #6 |
| 6076 | | --- |
| 6077 | | Chain | Description | UniProt |
| 6078 | | A | ADP-ribosylation factor 1 | ARF1_MOUSE |
| 6079 | | |
| 6080 | | |
| 6081 | | > log metadata #6 |
| 6082 | | |
| 6083 | | The model has no metadata |
| 6084 | | |
| 6085 | | > log chains #6 |
| 6086 | | |
| 6087 | | Chain information for AlphaFold P84078 #6 |
| 6088 | | --- |
| 6089 | | Chain | Description | UniProt |
| 6090 | | A | ADP-ribosylation factor 1 | ARF1_MOUSE |
| 6091 | | |
| 6092 | | |
| 6093 | | > show #11 models |
| 6094 | | |
| 6095 | | > hide #8 models |
| 6096 | | |
| 6097 | | > hide #!1 models |
| 6098 | | |
| 6099 | | > show #!1 models |
| 6100 | | |
| 6101 | | > hide #!1 models |
| 6102 | | |
| 6103 | | > show #3 models |
| 6104 | | |
| 6105 | | > select subtract #3 |
| 6106 | | |
| 6107 | | 31008 atoms, 31547 bonds, 1 pseudobond, 3908 residues, 10 models selected |
| 6108 | | |
| 6109 | | > select subtract #4 |
| 6110 | | |
| 6111 | | 23794 atoms, 24174 bonds, 1 pseudobond, 3003 residues, 9 models selected |
| 6112 | | |
| 6113 | | > select subtract #5 |
| 6114 | | |
| 6115 | | 16293 atoms, 16555 bonds, 1 pseudobond, 2050 residues, 8 models selected |
| 6116 | | |
| 6117 | | > select subtract #6 |
| 6118 | | |
| 6119 | | 14836 atoms, 15072 bonds, 1 pseudobond, 1869 residues, 7 models selected |
| 6120 | | |
| 6121 | | > select subtract #7 |
| 6122 | | |
| 6123 | | 13379 atoms, 13589 bonds, 1 pseudobond, 1688 residues, 6 models selected |
| 6124 | | |
| 6125 | | > select subtract #8 |
| 6126 | | |
| 6127 | | 11917 atoms, 12108 bonds, 1 pseudobond, 1509 residues, 5 models selected |
| 6128 | | |
| 6129 | | > select subtract #9 |
| 6130 | | |
| 6131 | | 5244 atoms, 5322 bonds, 656 residues, 3 models selected |
| 6132 | | |
| 6133 | | > select subtract #10 |
| 6134 | | |
| 6135 | | 3824 atoms, 3881 bonds, 479 residues, 2 models selected |
| 6136 | | |
| 6137 | | > select subtract #11 |
| 6138 | | |
| 6139 | | 1457 atoms, 1483 bonds, 181 residues, 1 model selected |
| 6140 | | |
| 6141 | | > select subtract #12 |
| 6142 | | |
| 6143 | | Nothing selected |
| 6144 | | |
| 6145 | | > show #4 models |
| 6146 | | |
| 6147 | | > hide #4 models |
| 6148 | | |
| 6149 | | > show #4 models |
| 6150 | | |
| 6151 | | > show #!1 models |
| 6152 | | |
| 6153 | | > hide #!1 models |
| 6154 | | |
| 6155 | | > show #6 models |
| 6156 | | |
| 6157 | | > hide #6 models |
| 6158 | | |
| 6159 | | > show #6 models |
| 6160 | | |
| 6161 | | > hide #6 models |
| 6162 | | |
| 6163 | | > show #12 models |
| 6164 | | |
| 6165 | | > hide #12 models |
| 6166 | | |
| 6167 | | > show #10 models |
| 6168 | | |
| 6169 | | > hide #10 models |
| 6170 | | |
| 6171 | | > show #8 models |
| 6172 | | |
| 6173 | | > hide #8 models |
| 6174 | | |
| 6175 | | > show #10 models |
| 6176 | | |
| 6177 | | > hide #4 models |
| 6178 | | |
| 6179 | | > show #5 models |
| 6180 | | |
| 6181 | | > hide #5 models |
| 6182 | | |
| 6183 | | > show #5 models |
| 6184 | | |
| 6185 | | > show #3,5,10-11 atoms |
| 6186 | | |
| 6187 | | > show #!1 models |
| 6188 | | |
| 6189 | | > hide #!1 models |
| 6190 | | |
| 6191 | | > show #!1 models |
| 6192 | | |
| 6193 | | > hide #!1 models |
| 6194 | | |
| 6195 | | > hide #3 models |
| 6196 | | |
| 6197 | | > show #3 models |
| 6198 | | |
| 6199 | | > hide #5 models |
| 6200 | | |
| 6201 | | > hide #3 models |
| 6202 | | |
| 6203 | | > hide #10 models |
| 6204 | | |
| 6205 | | > show #3 models |
| 6206 | | |
| 6207 | | > show #!1 models |
| 6208 | | |
| 6209 | | > hide #!1 models |
| 6210 | | |
| 6211 | | > show #!1 models |
| 6212 | | |
| 6213 | | > hide #!1 models |
| 6214 | | |
| 6215 | | > show #!1 models |
| 6216 | | |
| 6217 | | > hide #!1 models |
| 6218 | | |
| 6219 | | > hide #3 models |
| 6220 | | |
| 6221 | | > show #8 models |
| 6222 | | |
| 6223 | | > hide #8 models |
| 6224 | | |
| 6225 | | > show #4 models |
| 6226 | | |
| 6227 | | > show #4,11 atoms |
| 6228 | | |
| 6229 | | > show #!1 models |
| 6230 | | |
| 6231 | | > show #3 models |
| 6232 | | |
| 6233 | | > show #10 models |
| 6234 | | |
| 6235 | | > hide #!1 models |
| 6236 | | |
| 6237 | | > hide #3-4,10-11 atoms |
| 6238 | | |
| 6239 | | > select add #11 |
| 6240 | | |
| 6241 | | 2367 atoms, 2398 bonds, 298 residues, 1 model selected |
| 6242 | | |
| 6243 | | > color sel byhetero |
| 6244 | | |
| 6245 | | > show sel atoms |
| 6246 | | |
| 6247 | | > select subtract #11 |
| 6248 | | |
| 6249 | | Nothing selected |
| 6250 | | |
| 6251 | | > show #5 models |
| 6252 | | |
| 6253 | | > show #!1 models |
| 6254 | | |
| 6255 | | > hide #!1 models |
| 6256 | | |
| 6257 | | > show #!1 models |
| 6258 | | |
| 6259 | | > show #!2 models |
| 6260 | | |
| 6261 | | > hide #!2 models |
| 6262 | | |
| 6263 | | > hide #!1 models |
| 6264 | | |
| 6265 | | > show #!1 models |
| 6266 | | |
| 6267 | | > hide #!1 models |
| 6268 | | |
| 6269 | | > show #!1 models |
| 6270 | | |
| 6271 | | > hide #!1 models |
| 6272 | | |
| 6273 | | > show #!1 models |
| 6274 | | |
| 6275 | | > hide #!1 models |
| 6276 | | |
| 6277 | | > show #!1 models |
| 6278 | | |
| 6279 | | > hide #!1 models |
| 6280 | | |
| 6281 | | > show #!1 models |
| 6282 | | |
| 6283 | | > hide #!1 models |
| 6284 | | |
| 6285 | | > show #!9 models |
| 6286 | | |
| 6287 | | > hide #!9 models |
| 6288 | | |
| 6289 | | > show #!9 models |
| 6290 | | |
| 6291 | | > show #!1 models |
| 6292 | | |
| 6293 | | > hide #!1 models |
| 6294 | | |
| 6295 | | > show #!1 models |
| 6296 | | |
| 6297 | | > hide #!1 models |
| 6298 | | |
| 6299 | | > show #!1 models |
| 6300 | | |
| 6301 | | > hide #!1 models |
| 6302 | | |
| 6303 | | > show #!1 models |
| 6304 | | |
| 6305 | | > hide #11 models |
| 6306 | | |
| 6307 | | > show #11 models |
| 6308 | | |
| 6309 | | > hide #11 models |
| 6310 | | |
| 6311 | | > show #11 models |
| 6312 | | |
| 6313 | | > hide #11 models |
| 6314 | | |
| 6315 | | > show #11 models |
| 6316 | | |
| 6317 | | > select add #10 |
| 6318 | | |
| 6319 | | 1420 atoms, 1441 bonds, 177 residues, 1 model selected |
| 6320 | | |
| 6321 | | > select add #3 |
| 6322 | | |
| 6323 | | 11230 atoms, 11473 bonds, 1410 residues, 2 models selected |
| 6324 | | |
| 6325 | | > select add #4 |
| 6326 | | |
| 6327 | | 18444 atoms, 18846 bonds, 2315 residues, 3 models selected |
| 6328 | | |
| 6329 | | > show sel atoms |
| 6330 | | |
| 6331 | | > color sel byhetero |
| 6332 | | |
| 6333 | | > select subtract #3 |
| 6334 | | |
| 6335 | | 8634 atoms, 8814 bonds, 1082 residues, 2 models selected |
| 6336 | | |
| 6337 | | > select subtract #4 |
| 6338 | | |
| 6339 | | 1420 atoms, 1441 bonds, 177 residues, 1 model selected |
| 6340 | | |
| 6341 | | > select subtract #10 |
| 6342 | | |
| 6343 | | Nothing selected |
| 6344 | | |
| 6345 | | > hide #!1 models |
| 6346 | | |
| 6347 | | > hide #!9 models |
| 6348 | | |
| 6349 | | > show #!9 models |
| 6350 | | |
| 6351 | | > show #!1 models |
| 6352 | | |
| 6353 | | > volume #1 style mesh |
| 6354 | | |
| 6355 | | > volume #1 style surface |
| 6356 | | |
| 6357 | | > volume #1 color #b1b1b17f |
| 6358 | | |
| 6359 | | > volume #1 color #afafaf7f |
| 6360 | | |
| 6361 | | > volume #1 level 0.0118 |
| 6362 | | |
| 6363 | | > volume #1 level 0.008577 |
| 6364 | | |
| 6365 | | > volume #1 level 0.0104 |
| 6366 | | |
| 6367 | | > volume #2 level 0.1605 |
| 6368 | | |
| 6369 | | > volume #1 level 0.008436 |
| 6370 | | |
| 6371 | | > volume #1 level 0.01026 |
| 6372 | | |
| 6373 | | > volume #1 level 0.007033 |
| 6374 | | |
| 6375 | | > volume #1 level 0.007875 |
| 6376 | | |
| 6377 | | > volume #1 level 0.01068 |
| 6378 | | |
| 6379 | | > volume #1 level 0.008857 |
| 6380 | | |
| 6381 | | > volume #1 level 0.007174 |
| 6382 | | |
| 6383 | | > volume #1 level 0.009839 |
| 6384 | | |
| 6385 | | > ui tool show "Side View" |
| 6386 | | |
| 6387 | | > volume #1 level 0.009278 |
| 6388 | | |
| 6389 | | > hide #11 models |
| 6390 | | |
| 6391 | | > hide #!9 models |
| 6392 | | |
| 6393 | | > hide #10 models |
| 6394 | | |
| 6395 | | > hide #5 models |
| 6396 | | |
| 6397 | | > hide #4 models |
| 6398 | | |
| 6399 | | Drag select of 1422 atoms, 289 residues, 1232 bonds |
| 6400 | | |
| 6401 | | > ui tool show "Fit in Map" |
| 6402 | | |
| 6403 | | > show #!1 models |
| 6404 | | |
| 6405 | | > fitmap sel inMap #1 |
| 6406 | | |
| 6407 | | Fit molecule acop F8WHL2 (#3) to map postprocess.mrc (#1) using 2365 atoms |
| 6408 | | average map value = 0.008396, steps = 64 |
| 6409 | | shifted from previous position = 0.487 |
| 6410 | | rotated from previous position = 1.71 degrees |
| 6411 | | atoms outside contour = 1428, contour level = 0.0092781 |
| 6412 | | |
| 6413 | | Position of acop F8WHL2 (#3) relative to postprocess.mrc (#1) coordinates: |
| 6414 | | Matrix rotation and translation |
| 6415 | | 0.91219836 0.37649899 0.16168688 273.02716587 |
| 6416 | | -0.20531480 0.76147730 -0.61481553 358.66813907 |
| 6417 | | -0.35459832 0.52763701 0.77191917 352.72945796 |
| 6418 | | Axis 0.82659436 0.37354588 -0.42095753 |
| 6419 | | Axis point 0.00000000 -548.32199304 667.79519136 |
| 6420 | | Rotation angle (degrees) 43.71407343 |
| 6421 | | Shift along axis 211.17759714 |
| 6422 | | |
| 6423 | | |
| 6424 | | > fitmap sel inMap #1 |
| 6425 | | |
| 6426 | | Fit molecule acop F8WHL2 (#3) to map postprocess.mrc (#1) using 2365 atoms |
| 6427 | | average map value = 0.008396, steps = 44 |
| 6428 | | shifted from previous position = 0.0602 |
| 6429 | | rotated from previous position = 0.122 degrees |
| 6430 | | atoms outside contour = 1426, contour level = 0.0092781 |
| 6431 | | |
| 6432 | | Position of acop F8WHL2 (#3) relative to postprocess.mrc (#1) coordinates: |
| 6433 | | Matrix rotation and translation |
| 6434 | | 0.91165951 0.37825395 0.16062650 273.02136836 |
| 6435 | | -0.20726890 0.76074469 -0.61506675 358.63406864 |
| 6436 | | -0.35484718 0.52743858 0.77194041 352.76062362 |
| 6437 | | Axis 0.82585192 0.37260651 -0.42324106 |
| 6438 | | Axis point 0.00000000 -547.86166392 669.09704534 |
| 6439 | | Rotation angle (degrees) 43.76587675 |
| 6440 | | Shift along axis 209.80183211 |
| 6441 | | |
| 6442 | | |
| 6443 | | > fitmap sel inMap #1 |
| 6444 | | |
| 6445 | | Fit molecule acop F8WHL2 (#3) to map postprocess.mrc (#1) using 2365 atoms |
| 6446 | | average map value = 0.008396, steps = 48 |
| 6447 | | shifted from previous position = 0.008 |
| 6448 | | rotated from previous position = 0.0126 degrees |
| 6449 | | atoms outside contour = 1425, contour level = 0.0092781 |
| 6450 | | |
| 6451 | | Position of acop F8WHL2 (#3) relative to postprocess.mrc (#1) coordinates: |
| 6452 | | Matrix rotation and translation |
| 6453 | | 0.91157168 0.37844088 0.16068466 273.02809909 |
| 6454 | | -0.20736646 0.76067368 -0.61512169 358.62890418 |
| 6455 | | -0.35501579 0.52740690 0.77188453 352.75435033 |
| 6456 | | Axis 0.82573495 0.37271004 -0.42337811 |
| 6457 | | Axis point 0.00000000 -547.84692199 669.07342633 |
| 6458 | | Rotation angle (degrees) 43.77476898 |
| 6459 | | Shift along axis 209.76496906 |
| 6460 | | |
| 6461 | | |
| 6462 | | > fitmap sel inMap #1 |
| 6463 | | |
| 6464 | | Fit molecule acop F8WHL2 (#3) to map postprocess.mrc (#1) using 2365 atoms |
| 6465 | | average map value = 0.008396, steps = 40 |
| 6466 | | shifted from previous position = 0.0437 |
| 6467 | | rotated from previous position = 0.0783 degrees |
| 6468 | | atoms outside contour = 1426, contour level = 0.0092781 |
| 6469 | | |
| 6470 | | Position of acop F8WHL2 (#3) relative to postprocess.mrc (#1) coordinates: |
| 6471 | | Matrix rotation and translation |
| 6472 | | 0.91189991 0.37734607 0.16139540 273.02985270 |
| 6473 | | -0.20623049 0.76130412 -0.61472353 358.67292985 |
| 6474 | | -0.35483449 0.52728168 0.77205343 352.73949104 |
| 6475 | | Axis 0.82605985 0.37341055 -0.42212519 |
| 6476 | | Axis point 0.00000000 -548.53424760 668.55477028 |
| 6477 | | Rotation angle (degrees) 43.72805759 |
| 6478 | | Shift along axis 210.57103104 |
| 6479 | | |
| 6480 | | |
| 6481 | | > fitmap sel inMap #1 |
| 6482 | | |
| 6483 | | Fit molecule acop F8WHL2 (#3) to map postprocess.mrc (#1) using 2365 atoms |
| 6484 | | average map value = 0.008396, steps = 44 |
| 6485 | | shifted from previous position = 0.0362 |
| 6486 | | rotated from previous position = 0.059 degrees |
| 6487 | | atoms outside contour = 1428, contour level = 0.0092781 |
| 6488 | | |
| 6489 | | Position of acop F8WHL2 (#3) relative to postprocess.mrc (#1) coordinates: |
| 6490 | | Matrix rotation and translation |
| 6491 | | 0.91166197 0.37815506 0.16084521 273.02714315 |
| 6492 | | -0.20706981 0.76081322 -0.61504904 358.63509873 |
| 6493 | | -0.35495707 0.52741064 0.77190898 352.75166197 |
| 6494 | | Axis 0.82584358 0.37285518 -0.42303830 |
| 6495 | | Axis point 0.00000000 -547.96751807 668.91182334 |
| 6496 | | Rotation angle (degrees) 43.76423830 |
| 6497 | | Shift along axis 209.96920099 |
| 6498 | | |
| 6499 | | |
| 6500 | | > select clear |
| 6501 | | |
| 6502 | | > show #11 models |
| 6503 | | |
| 6504 | | > volume #1 level 0.006975 |
| 6505 | | |
| 6506 | | > volume #1 level 0.006399 |
| 6507 | | |
| 6508 | | > show #!9 models |
| 6509 | | |
| 6510 | | > show #10 models |
| 6511 | | |
| 6512 | | > show #4 models |
| 6513 | | |
| 6514 | | > show #5 models |
| 6515 | | |
| 6516 | | > volume #1 level 0.009134 |
| 6517 | | |
| 6518 | | > volume #1 level 0.01172 |
| 6519 | | |
| 6520 | | > show #8 models |
| 6521 | | |
| 6522 | | > volume #1 level 0.008702 |
| 6523 | | |
| 6524 | | > volume #1 level 0.006543 |
| 6525 | | |
| 6526 | | > volume #1 style image region 0,0,121,243,243,121 step 1 showOutlineBox true |
| 6527 | | |
| 6528 | | > volume #1 region 0,0,0,243,243,243 step 1 |
| 6529 | | |
| 6530 | | > volume #1 style surface region 0,0,0,243,243,243 step 1 |
| 6531 | | |
| 6532 | | > volume #1 style image colorMode opaque8 orthoplanes xyz positionPlanes |
| 6533 | | > 121,121,121 imageMode orthoplanes |
| 6534 | | |
| 6535 | | > select clear |
| 6536 | | |
| 6537 | | [Repeated 2 time(s)]Drag select of 1 atoms |
| 6538 | | |
| 6539 | | > volume #1 region 0,0,121,243,243,121 step 1 colorMode auto8 imageMode "full |
| 6540 | | > region" |
| 6541 | | |
| 6542 | | > volume #1 level -0.001441,0 level 0.008572,0.8 level 0.03099,1 |
| 6543 | | |
| 6544 | | > volume #1 level -0.002945,0 level 0.008572,0.8 level 0.03099,1 |
| 6545 | | |
| 6546 | | > view orient |
| 6547 | | |
| 6548 | | > volume #2 level 0.07496 |
| 6549 | | |
| 6550 | | > volume #2 level 0.06071 |
| 6551 | | |
| 6552 | | > volume #2 level 0.07496 |
| 6553 | | |
| 6554 | | > volume #1 region 0,0,0,243,243,243 step 1 |
| 6555 | | |
| 6556 | | > volume #1 style surface region 0,0,0,243,243,243 step 1 |
| 6557 | | |
| 6558 | | > volume #1 level 0.005561 |
| 6559 | | |
| 6560 | | > volume #1 level 0.006964 |
| 6561 | | |
| 6562 | | > volume #1 level 0.00963 |
| 6563 | | |
| 6564 | | > ui tool show "Side View" |
| 6565 | | |
| 6566 | | > volume #1 level 0.007183 |
| 6567 | | |
| 6568 | | > volume #1 level 0.006895 |
| 6569 | | |
| 6570 | | > hide #4 models |
| 6571 | | |
| 6572 | | > show #4 models |
| 6573 | | |
| 6574 | | > hide #3 models |
| 6575 | | |
| 6576 | | > show #3 models |
| 6577 | | |
| 6578 | | > hide #3 models |
| 6579 | | |
| 6580 | | > volume #1 level 0.005456 |
| 6581 | | |
| 6582 | | > volume #2 level 0.1391 |
| 6583 | | |
| 6584 | | > volume #2 level 0.1017 |
| 6585 | | |
| 6586 | | > volume #2 level 0.107 |
| 6587 | | |
| 6588 | | > volume #1 level 0.004161 |
| 6589 | | |
| 6590 | | > volume #2 level 0.08921 |
| 6591 | | |
| 6592 | | > volume #1 level 0.007039 |
| 6593 | | |
| 6594 | | > volume #2 level 0.07139 |
| 6595 | | |
| 6596 | | > show #3 models |
| 6597 | | |
| 6598 | | > show #6 models |
| 6599 | | |
| 6600 | | > select add #4 |
| 6601 | | |
| 6602 | | 7215 atoms, 7373 bonds, 906 residues, 2 models selected |
| 6603 | | |
| 6604 | | > select subtract #4 |
| 6605 | | |
| 6606 | | 1 atom, 1 residue, 1 model selected |
| 6607 | | |
| 6608 | | > show #7 models |
| 6609 | | |
| 6610 | | > volume #2 level 0.1088 |
| 6611 | | |
| 6612 | | > volume #1 level 0.008479 |
| 6613 | | |
| 6614 | | > volume #1 level 0.007615 |
| 6615 | | |
| 6616 | | > save /fs/gpfs41/lv09/fileset01/pool/pool- |
| 6617 | | > briggs/taylor/em_data/20220715_COPI_Golph/alignments/alphafold_copi_colored_RT.cxs |
| 6618 | | |
| 6619 | | ——— End of log from Mon Nov 6 14:26:30 2023 ——— |
| 6620 | | |
| 6621 | | opened ChimeraX session |
| 6622 | | |
| 6623 | | > view matrix models |
| 6624 | | > #5,0.046501,-0.73948,0.67157,279.15,-0.16587,0.65725,0.73519,333.32,-0.98505,-0.14558,-0.092095,332.17 |
| 6625 | | |
| 6626 | | > undo |
| 6627 | | |
| 6628 | | > select add #5 |
| 6629 | | |
| 6630 | | 7501 atoms, 7619 bonds, 953 residues, 1 model selected |
| 6631 | | |
| 6632 | | > select subtract #5 |
| 6633 | | |
| 6634 | | Nothing selected |
| 6635 | | |
| 6636 | | > select add #5 |
| 6637 | | |
| 6638 | | 7501 atoms, 7619 bonds, 953 residues, 1 model selected |
| 6639 | | |
| 6640 | | > select subtract #5 |
| 6641 | | |
| 6642 | | Nothing selected |
| 6643 | | |
| 6644 | | > select add #5 |
| 6645 | | |
| 6646 | | 7501 atoms, 7619 bonds, 953 residues, 1 model selected |
| 6647 | | |
| 6648 | | > select subtract #5 |
| 6649 | | |
| 6650 | | Nothing selected |
| 6651 | | |
| 6652 | | > view orient |
| 6653 | | |
| 6654 | | > ui tool show "Side View" |
| 6655 | | |
| 6656 | | [Repeated 1 time(s)] |
| 6657 | | |
| 6658 | | > open "/fs/gpfs41/lv09/fileset01/pool/pool- |
| 6659 | | > briggs/taylor/em_data/20220715_COPI_Golph/alignments/Golph3_ Q9CRA5.pdb" |
| 6660 | | |
| 6661 | | Golph3_ Q9CRA5.pdb title: |
| 6662 | | Alphafold monomer V2.0 prediction for golgi phosphoprotein 3 (Q9CRA5) [more |
| 6663 | | info...] |
| 6664 | | |
| 6665 | | Chain information for Golph3_ Q9CRA5.pdb #13 |
| 6666 | | --- |
| 6667 | | Chain | Description | UniProt |
| 6668 | | A | golgi phosphoprotein 3 | GOLP3_MOUSE |
| 6669 | | |
| 6670 | | |
| 6671 | | > color #13 #aa00ffff |
| 6672 | | |
| 6673 | | > select add #13 |
| 6674 | | |
| 6675 | | 2367 atoms, 2398 bonds, 298 residues, 1 model selected |
| 6676 | | |
| 6677 | | > view matrix models #13,1,0,0,276.76,0,1,0,332.9,0,0,1,0 |
| 6678 | | |
| 6679 | | > view orient |
| 6680 | | |
| 6681 | | > view matrix models #13,1,0,0,355.84,0,1,0,382.85,0,0,1,275.03 |
| 6682 | | |
| 6683 | | > view orient |
| 6684 | | |
| 6685 | | > hide #!1 models |
| 6686 | | |
| 6687 | | > hide #3 models |
| 6688 | | |
| 6689 | | > hide #4 models |
| 6690 | | |
| 6691 | | > hide #5 models |
| 6692 | | |
| 6693 | | > hide #6 models |
| 6694 | | |
| 6695 | | > hide #7 models |
| 6696 | | |
| 6697 | | > hide #8 models |
| 6698 | | |
| 6699 | | > hide #!9 models |
| 6700 | | |
| 6701 | | > hide #10 models |
| 6702 | | |
| 6703 | | > view matrix models #13,1,0,0,268.7,0,1,0,322.92,0,0,1,275.03 |
| 6704 | | |
| 6705 | | > ui mousemode right "rotate selected models" |
| 6706 | | |
| 6707 | | > view matrix models |
| 6708 | | > #13,0.97373,0.15944,-0.16259,268.4,0.044839,0.56579,0.82333,324.28,0.22326,-0.80899,0.54377,274.73 |
| 6709 | | |
| 6710 | | > view matrix models |
| 6711 | | > #13,0.32122,0.91528,-0.24308,262.8,0.6686,-0.037407,0.74268,329.55,0.67067,-0.40108,-0.62397,277.87 |
| 6712 | | |
| 6713 | | > select subtract #13 |
| 6714 | | |
| 6715 | | Nothing selected |
| 6716 | | |
| 6717 | | > select add #11 |
| 6718 | | |
| 6719 | | 2367 atoms, 2398 bonds, 298 residues, 1 model selected |
| 6720 | | |
| 6721 | | > hide sel atoms |
| 6722 | | |
| 6723 | | > select add #13 |
| 6724 | | |
| 6725 | | 4734 atoms, 4796 bonds, 596 residues, 2 models selected |
| 6726 | | |
| 6727 | | > select subtract #11 |
| 6728 | | |
| 6729 | | 2367 atoms, 2398 bonds, 298 residues, 1 model selected |
| 6730 | | |
| 6731 | | > view matrix models |
| 6732 | | > #13,0.16284,0.95393,-0.25201,261.15,-0.28856,0.2903,0.91239,320.3,0.94351,-0.075856,0.32253,283.56 |
| 6733 | | |
| 6734 | | > view matrix models |
| 6735 | | > #13,-0.78377,0.61861,-0.055017,250.68,-0.31405,-0.31835,0.89444,318.7,0.5358,0.71831,0.44379,281.11 |
| 6736 | | |
| 6737 | | > view matrix models |
| 6738 | | > #13,-0.5019,0.83478,-0.22636,253.8,-0.70387,-0.24212,0.66779,314.17,0.50265,0.49449,0.7091,280.86 |
| 6739 | | |
| 6740 | | > view matrix models |
| 6741 | | > #13,0.065166,-0.9415,0.33066,257.36,-0.3304,0.29232,0.89743,319.82,-0.94159,-0.16773,-0.29202,261.72 |
| 6742 | | |
| 6743 | | > view matrix models |
| 6744 | | > #13,0.012373,0.97222,-0.23374,259.61,-0.60886,0.19276,0.76951,316.33,0.79318,0.1328,0.59433,282.97 |
| 6745 | | |
| 6746 | | > view matrix models |
| 6747 | | > #13,-0.59761,-0.48095,-0.64152,249.08,-0.74685,0.042854,0.66361,314.3,-0.29167,0.8757,-0.38481,270.73 |
| 6748 | | |
| 6749 | | > view matrix models |
| 6750 | | > #13,-0.15915,-0.98598,0.050164,254.24,-0.69624,0.14812,0.70236,315.15,-0.69994,0.076857,-0.71005,263.93 |
| 6751 | | |
| 6752 | | > view matrix models |
| 6753 | | > #13,-0.66249,-0.74742,-0.049687,249.11,-0.69396,0.58743,0.41634,315.48,-0.282,0.31031,-0.90785,268.5 |
| 6754 | | |
| 6755 | | > view matrix models |
| 6756 | | > #13,-0.55091,-0.8161,0.17456,250.65,-0.5615,0.5172,0.64592,317.26,-0.61742,0.25783,-0.74318,265.13 |
| 6757 | | |
| 6758 | | > view matrix models |
| 6759 | | > #13,-0.93688,0.069665,-0.34263,247.24,-0.088586,0.90068,0.42535,322.68,0.33824,0.42886,-0.83766,275.58 |
| 6760 | | |
| 6761 | | > view matrix models |
| 6762 | | > #13,-0.43282,-0.17251,-0.88482,250.98,-0.83401,0.44921,0.32038,313.47,0.3422,0.87661,-0.3383,277.66 |
| 6763 | | |
| 6764 | | > view matrix models |
| 6765 | | > #13,-0.057092,0.66385,-0.74569,257.1,-0.6289,0.55617,0.54328,316.39,0.77539,0.49998,0.38574,283.11 |
| 6766 | | |
| 6767 | | > view matrix models |
| 6768 | | > #13,0.61602,-0.32904,0.71571,265.43,-0.73709,0.079722,0.67107,314.5,-0.27787,-0.94095,-0.19342,267.45 |
| 6769 | | |
| 6770 | | > view matrix models |
| 6771 | | > #13,0.69392,0.13166,0.70791,267.23,-0.72004,0.12232,0.68306,314.8,0.0033426,-0.98372,0.17968,271.2 |
| 6772 | | |
| 6773 | | > ui mousemode right "translate selected models" |
| 6774 | | |
| 6775 | | > view matrix models |
| 6776 | | > #13,0.69392,0.13166,0.70791,301.65,-0.72004,0.12232,0.68306,347.24,0.0033426,-0.98372,0.17968,308.86 |
| 6777 | | |
| 6778 | | > view matrix models |
| 6779 | | > #13,0.69392,0.13166,0.70791,309.76,-0.72004,0.12232,0.68306,353.07,0.0033426,-0.98372,0.17968,297.95 |
| 6780 | | |
| 6781 | | > view matrix models |
| 6782 | | > #13,0.69392,0.13166,0.70791,305.93,-0.72004,0.12232,0.68306,351.19,0.0033426,-0.98372,0.17968,303.08 |
| 6783 | | |
| 6784 | | > ui mousemode right "rotate selected models" |
| 6785 | | |
| 6786 | | > view matrix models |
| 6787 | | > #13,0.11747,-0.64077,0.75869,298.2,-0.61649,0.55189,0.56157,352.95,-0.77855,-0.53369,-0.3302,294.5 |
| 6788 | | |
| 6789 | | > view matrix models |
| 6790 | | > #13,0.1885,-0.97807,0.088577,296.79,-0.84088,-0.11415,0.52904,349.05,-0.50733,-0.17421,-0.84396,297.06 |
| 6791 | | |
| 6792 | | > view matrix models |
| 6793 | | > #13,0.59014,-0.11275,0.79939,304.49,-0.72863,-0.50075,0.46728,349.31,0.34761,-0.85822,-0.37766,305.84 |
| 6794 | | |
| 6795 | | > ui mousemode right "translate selected models" |
| 6796 | | |
| 6797 | | > view matrix models |
| 6798 | | > #13,0.59014,-0.11275,0.79939,308.27,-0.72863,-0.50075,0.46728,345.91,0.34761,-0.85822,-0.37766,300.91 |
| 6799 | | |
| 6800 | | > ui tool show "Fit in Map" |
| 6801 | | |
| 6802 | | > fitmap #13 inMap #1 |
| 6803 | | |
| 6804 | | Fit molecule Golph3_ Q9CRA5.pdb (#13) to map postprocess.mrc (#1) using 2367 |
| 6805 | | atoms |
| 6806 | | average map value = 0.00809, steps = 76 |
| 6807 | | shifted from previous position = 3.41 |
| 6808 | | rotated from previous position = 10.8 degrees |
| 6809 | | atoms outside contour = 1145, contour level = 0.007615 |
| 6810 | | |
| 6811 | | Position of Golph3_ Q9CRA5.pdb (#13) relative to postprocess.mrc (#1) |
| 6812 | | coordinates: |
| 6813 | | Matrix rotation and translation |
| 6814 | | 0.64614882 -0.25313043 0.72001159 309.96620079 |
| 6815 | | -0.70221101 -0.56674711 0.43092622 345.46001007 |
| 6816 | | 0.29898395 -0.78404254 -0.54395395 303.52015626 |
| 6817 | | Axis -0.89203727 0.30912099 -0.32971763 |
| 6818 | | Axis point 0.00000000 273.71750205 -0.02590981 |
| 6819 | | Rotation angle (degrees) 137.07755023 |
| 6820 | | Shift along axis -269.78841019 |
| 6821 | | |
| 6822 | | |
| 6823 | | > fitmap #13 inMap #1 |
| 6824 | | |
| 6825 | | Fit molecule Golph3_ Q9CRA5.pdb (#13) to map postprocess.mrc (#1) using 2367 |
| 6826 | | atoms |
| 6827 | | average map value = 0.008089, steps = 44 |
| 6828 | | shifted from previous position = 0.0456 |
| 6829 | | rotated from previous position = 0.0682 degrees |
| 6830 | | atoms outside contour = 1141, contour level = 0.007615 |
| 6831 | | |
| 6832 | | Position of Golph3_ Q9CRA5.pdb (#13) relative to postprocess.mrc (#1) |
| 6833 | | coordinates: |
| 6834 | | Matrix rotation and translation |
| 6835 | | 0.64651584 -0.25217749 0.72001651 309.93070193 |
| 6836 | | -0.70151346 -0.56742773 0.43116659 345.48458153 |
| 6837 | | 0.29982682 -0.78385731 -0.54375692 303.52703002 |
| 6838 | | Axis -0.89215987 0.30853416 -0.32993550 |
| 6839 | | Axis point 0.00000000 273.57083787 -0.00990298 |
| 6840 | | Rotation angle (degrees) 137.08245403 |
| 6841 | | Shift along axis -270.05828434 |
| 6842 | | |
| 6843 | | |
| 6844 | | > fitmap #13 inMap #1 |
| 6845 | | |
| 6846 | | Fit molecule Golph3_ Q9CRA5.pdb (#13) to map postprocess.mrc (#1) using 2367 |
| 6847 | | atoms |
| 6848 | | average map value = 0.008089, steps = 44 |
| 6849 | | shifted from previous position = 0.0194 |
| 6850 | | rotated from previous position = 0.0463 degrees |
| 6851 | | atoms outside contour = 1142, contour level = 0.007615 |
| 6852 | | |
| 6853 | | Position of Golph3_ Q9CRA5.pdb (#13) relative to postprocess.mrc (#1) |
| 6854 | | coordinates: |
| 6855 | | Matrix rotation and translation |
| 6856 | | 0.64604103 -0.25275846 0.72023895 309.94363828 |
| 6857 | | -0.70206406 -0.56707846 0.43072970 345.49036416 |
| 6858 | | 0.29956141 -0.78392294 -0.54380858 303.51714131 |
| 6859 | | Axis -0.89201211 0.30893561 -0.32995938 |
| 6860 | | Axis point 0.00000000 273.66219930 -0.04201137 |
| 6861 | | Rotation angle (degrees) 137.08990962 |
| 6862 | | Shift along axis -269.88752898 |
| 6863 | | |
| 6864 | | |
| 6865 | | > fitmap #13 inMap #1 |
| 6866 | | |
| 6867 | | Fit molecule Golph3_ Q9CRA5.pdb (#13) to map postprocess.mrc (#1) using 2367 |
| 6868 | | atoms |
| 6869 | | average map value = 0.00809, steps = 44 |
| 6870 | | shifted from previous position = 0.0418 |
| 6871 | | rotated from previous position = 0.0504 degrees |
| 6872 | | atoms outside contour = 1143, contour level = 0.007615 |
| 6873 | | |
| 6874 | | Position of Golph3_ Q9CRA5.pdb (#13) relative to postprocess.mrc (#1) |
| 6875 | | coordinates: |
| 6876 | | Matrix rotation and translation |
| 6877 | | 0.64636118 -0.25319855 0.71979699 309.93048754 |
| 6878 | | -0.70211612 -0.56670327 0.43113844 345.45300114 |
| 6879 | | 0.29874768 -0.78405222 -0.54406978 303.52367429 |
| 6880 | | Axis -0.89210135 0.30910265 -0.32956142 |
| 6881 | | Axis point 0.00000000 273.71820034 0.01220992 |
| 6882 | | Rotation angle (degrees) 137.07164569 |
| 6883 | | Shift along axis -269.73866191 |
| 6884 | | |
| 6885 | | |
| 6886 | | > fitmap #13 inMap #1 |
| 6887 | | |
| 6888 | | Fit molecule Golph3_ Q9CRA5.pdb (#13) to map postprocess.mrc (#1) using 2367 |
| 6889 | | atoms |
| 6890 | | average map value = 0.00809, steps = 44 |
| 6891 | | shifted from previous position = 0.0257 |
| 6892 | | rotated from previous position = 0.0502 degrees |
| 6893 | | atoms outside contour = 1141, contour level = 0.007615 |
| 6894 | | |
| 6895 | | Position of Golph3_ Q9CRA5.pdb (#13) relative to postprocess.mrc (#1) |
| 6896 | | coordinates: |
| 6897 | | Matrix rotation and translation |
| 6898 | | 0.64652691 -0.25247006 0.71990403 309.92686216 |
| 6899 | | -0.70167034 -0.56717519 0.43124359 345.47615271 |
| 6900 | | 0.29943561 -0.78394590 -0.54384478 303.51593635 |
| 6901 | | Axis -0.89215765 0.30869599 -0.32979010 |
| 6902 | | Axis point 0.00000000 273.61712486 -0.00837966 |
| 6903 | | Rotation angle (degrees) 137.07506047 |
| 6904 | | Shift along axis -269.95306990 |
| 6905 | | |
| 6906 | | |
| 6907 | | > fitmap #13 inMap #1 |
| 6908 | | |
| 6909 | | Fit molecule Golph3_ Q9CRA5.pdb (#13) to map postprocess.mrc (#1) using 2367 |
| 6910 | | atoms |
| 6911 | | average map value = 0.008089, steps = 60 |
| 6912 | | shifted from previous position = 0.0226 |
| 6913 | | rotated from previous position = 0.0373 degrees |
| 6914 | | atoms outside contour = 1142, contour level = 0.007615 |
| 6915 | | |
| 6916 | | Position of Golph3_ Q9CRA5.pdb (#13) relative to postprocess.mrc (#1) |
| 6917 | | coordinates: |
| 6918 | | Matrix rotation and translation |
| 6919 | | 0.64611264 -0.25289852 0.72012554 309.94576635 |
| 6920 | | -0.70211941 -0.56690516 0.43086759 345.48140307 |
| 6921 | | 0.29927711 -0.78400311 -0.54384955 303.52003959 |
| 6922 | | Axis -0.89202854 0.30901133 -0.32984403 |
| 6923 | | Axis point 0.00000000 273.69093966 -0.03799504 |
| 6924 | | Rotation angle (degrees) 137.08132893 |
| 6925 | | Shift along axis -269.83707582 |
| 6926 | | |
| 6927 | | |
| 6928 | | > fitmap #13 inMap #1 |
| 6929 | | |
| 6930 | | Fit molecule Golph3_ Q9CRA5.pdb (#13) to map postprocess.mrc (#1) using 2367 |
| 6931 | | atoms |
| 6932 | | average map value = 0.00809, steps = 44 |
| 6933 | | shifted from previous position = 0.0335 |
| 6934 | | rotated from previous position = 0.0327 degrees |
| 6935 | | atoms outside contour = 1142, contour level = 0.007615 |
| 6936 | | |
| 6937 | | Position of Golph3_ Q9CRA5.pdb (#13) relative to postprocess.mrc (#1) |
| 6938 | | coordinates: |
| 6939 | | Matrix rotation and translation |
| 6940 | | 0.64640789 -0.25311440 0.71978464 309.92928487 |
| 6941 | | -0.70205233 -0.56674684 0.43118505 345.45377982 |
| 6942 | | 0.29879653 -0.78404790 -0.54404919 303.52341629 |
| 6943 | | Axis -0.89211568 0.30905194 -0.32957020 |
| 6944 | | Axis point 0.00000000 273.70689544 0.01206002 |
| 6945 | | Rotation angle (degrees) 137.07064729 |
| 6946 | | Shift along axis -269.76188543 |
| 6947 | | |
| 6948 | | |
| 6949 | | > fitmap #13 inMap #1 |
| 6950 | | |
| 6951 | | Fit molecule Golph3_ Q9CRA5.pdb (#13) to map postprocess.mrc (#1) using 2367 |
| 6952 | | atoms |
| 6953 | | average map value = 0.00809, steps = 44 |
| 6954 | | shifted from previous position = 0.00803 |
| 6955 | | rotated from previous position = 0.0272 degrees |
| 6956 | | atoms outside contour = 1144, contour level = 0.007615 |
| 6957 | | |
| 6958 | | Position of Golph3_ Q9CRA5.pdb (#13) relative to postprocess.mrc (#1) |
| 6959 | | coordinates: |
| 6960 | | Matrix rotation and translation |
| 6961 | | 0.64651368 -0.25270084 0.71983495 309.92467471 |
| 6962 | | -0.70180692 -0.56697645 0.43128268 345.45873947 |
| 6963 | | 0.29914397 -0.78401530 -0.54390523 303.52203189 |
| 6964 | | Axis -0.89214924 0.30882890 -0.32968840 |
| 6965 | | Axis point 0.00000000 273.65121371 -0.00046679 |
| 6966 | | Rotation angle (degrees) 137.06980045 |
| 6967 | | Shift along axis -269.87911520 |
| 6968 | | |
| 6969 | | |
| 6970 | | > fitmap #13 inMap #1 |
| 6971 | | |
| 6972 | | Fit molecule Golph3_ Q9CRA5.pdb (#13) to map postprocess.mrc (#1) using 2367 |
| 6973 | | atoms |
| 6974 | | average map value = 0.00809, steps = 36 |
| 6975 | | shifted from previous position = 0.0382 |
| 6976 | | rotated from previous position = 0.0185 degrees |
| 6977 | | atoms outside contour = 1143, contour level = 0.007615 |
| 6978 | | |
| 6979 | | Position of Golph3_ Q9CRA5.pdb (#13) relative to postprocess.mrc (#1) |
| 6980 | | coordinates: |
| 6981 | | Matrix rotation and translation |
| 6982 | | 0.64630410 -0.25291434 0.71994815 309.96058094 |
| 6983 | | -0.70202489 -0.56686202 0.43107830 345.44892887 |
| 6984 | | 0.29908538 -0.78402920 -0.54391741 303.51941258 |
| 6985 | | Axis -0.89208498 0.30898119 -0.32971961 |
| 6986 | | Axis point 0.00000000 273.68044455 -0.01876412 |
| 6987 | | Rotation angle (degrees) 137.07431483 |
| 6988 | | Shift along axis -269.85025963 |
| 6989 | | |
| 6990 | | |
| 6991 | | > fitmap #13 inMap #1 |
| 6992 | | |
| 6993 | | Fit molecule Golph3_ Q9CRA5.pdb (#13) to map postprocess.mrc (#1) using 2367 |
| 6994 | | atoms |
| 6995 | | average map value = 0.00809, steps = 40 |
| 6996 | | shifted from previous position = 0.011 |
| 6997 | | rotated from previous position = 0.0289 degrees |
| 6998 | | atoms outside contour = 1144, contour level = 0.007615 |
| 6999 | | |
| 7000 | | Position of Golph3_ Q9CRA5.pdb (#13) relative to postprocess.mrc (#1) |
| 7001 | | coordinates: |
| 7002 | | Matrix rotation and translation |
| 7003 | | 0.64629761 -0.25253292 0.72008785 309.96423516 |
| 7004 | | -0.70183762 -0.56713436 0.43102502 345.45952995 |
| 7005 | | 0.29953856 -0.78395519 -0.54377469 303.52011382 |
| 7006 | | Axis -0.89208737 0.30878422 -0.32989760 |
| 7007 | | Axis point 0.00000000 273.62558016 -0.03473124 |
| 7008 | | Rotation angle (degrees) 137.08004063 |
| 7009 | | Shift along axis -269.97328544 |
| 7010 | | |
| 7011 | | |
| 7012 | | > fitmap #13 inMap #1 |
| 7013 | | |
| 7014 | | Fit molecule Golph3_ Q9CRA5.pdb (#13) to map postprocess.mrc (#1) using 2367 |
| 7015 | | atoms |
| 7016 | | average map value = 0.00809, steps = 40 |
| 7017 | | shifted from previous position = 0.0105 |
| 7018 | | rotated from previous position = 0.0439 degrees |
| 7019 | | atoms outside contour = 1145, contour level = 0.007615 |
| 7020 | | |
| 7021 | | Position of Golph3_ Q9CRA5.pdb (#13) relative to postprocess.mrc (#1) |
| 7022 | | coordinates: |
| 7023 | | Matrix rotation and translation |
| 7024 | | 0.64606725 -0.25321007 0.72005678 309.97169872 |
| 7025 | | -0.70226344 -0.56678527 0.43079057 345.46213640 |
| 7026 | | 0.29903707 -0.78398923 -0.54400158 303.51790237 |
| 7027 | | Axis -0.89201641 0.30915603 -0.32974122 |
| 7028 | | Axis point 0.00000000 273.71811066 -0.02066242 |
| 7029 | | Rotation angle (degrees) 137.08459098 |
| 7030 | | Shift along axis -269.78050527 |
| 7031 | | |
| 7032 | | |
| 7033 | | > ui mousemode right "rotate selected models" |
| 7034 | | |
| 7035 | | > view matrix models |
| 7036 | | > #13,0.60865,-0.30325,0.7332,309.49,-0.75282,-0.51259,0.41293,344.99,0.25061,-0.8033,-0.54029,302.96 |
| 7037 | | |
| 7038 | | > fitmap #13 inMap #1 |
| 7039 | | |
| 7040 | | Fit molecule Golph3_ Q9CRA5.pdb (#13) to map postprocess.mrc (#1) using 2367 |
| 7041 | | atoms |
| 7042 | | average map value = 0.00809, steps = 52 |
| 7043 | | shifted from previous position = 0.584 |
| 7044 | | rotated from previous position = 4.55 degrees |
| 7045 | | atoms outside contour = 1145, contour level = 0.007615 |
| 7046 | | |
| 7047 | | Position of Golph3_ Q9CRA5.pdb (#13) relative to postprocess.mrc (#1) |
| 7048 | | coordinates: |
| 7049 | | Matrix rotation and translation |
| 7050 | | 0.64612560 -0.25328407 0.71997839 309.97378268 |
| 7051 | | -0.70229521 -0.56665464 0.43091061 345.45261473 |
| 7052 | | 0.29883630 -0.78405975 -0.54401026 303.51809865 |
| 7053 | | Axis -0.89202933 0.30920186 -0.32966328 |
| 7054 | | Axis point 0.00000000 273.73630342 -0.02211936 |
| 7055 | | Rotation angle (degrees) 137.07700574 |
| 7056 | | Shift along axis -269.74988755 |
| 7057 | | |
| 7058 | | |
| 7059 | | > close #11 |
| 7060 | | |
| 7061 | | > select subtract #13 |
| 7062 | | |
| 7063 | | Nothing selected |
| 7064 | | |
| 7065 | | > show #13 atoms |
| 7066 | | |
| 7067 | | > open /fs/gpfs41/lv09/fileset01/pool/pool- |
| 7068 | | > briggs/taylor/em_data/20220715_COPI_Golph/alignments/CopZ1_P61924.pdb |
| 7069 | | |
| 7070 | | CopZ1_P61924.pdb title: |
| 7071 | | Alphafold monomer V2.0 prediction for coatomer subunit ζ-1 (P61924) [more |
| 7072 | | info...] |
| 7073 | | |
| 7074 | | Chain information for CopZ1_P61924.pdb #11 |
| 7075 | | --- |
| 7076 | | Chain | Description | UniProt |
| 7077 | | A | coatomer subunit ζ-1 | COPZ1_MOUSE |
| 7078 | | |
| 7079 | | |
| 7080 | | > select add #11 |
| 7081 | | |
| 7082 | | 1420 atoms, 1441 bonds, 177 residues, 1 model selected |
| 7083 | | |
| 7084 | | > hide #13 models |
| 7085 | | |
| 7086 | | > show #10 models |
| 7087 | | |
| 7088 | | > color #11 yellow |
| 7089 | | |
| 7090 | | > view orient |
| 7091 | | |
| 7092 | | > ui mousemode right "translate selected models" |
| 7093 | | |
| 7094 | | > view matrix models #11,1,0,0,412.97,0,1,0,362.45,0,0,1,0 |
| 7095 | | |
| 7096 | | > ui mousemode right "rotate selected models" |
| 7097 | | |
| 7098 | | > view matrix models |
| 7099 | | > #11,0.28196,-0.95943,0,404.1,0.95943,0.28196,0,362.86,0,0,1,0 |
| 7100 | | |
| 7101 | | > select subtract #11 |
| 7102 | | |
| 7103 | | Nothing selected |
| 7104 | | |
| 7105 | | > select add #10 |
| 7106 | | |
| 7107 | | 1420 atoms, 1441 bonds, 177 residues, 1 model selected |
| 7108 | | |
| 7109 | | > hide sel atoms |
| 7110 | | |
| 7111 | | > select subtract #10 |
| 7112 | | |
| 7113 | | Nothing selected |
| 7114 | | |
| 7115 | | > select add #11 |
| 7116 | | |
| 7117 | | 1420 atoms, 1441 bonds, 177 residues, 1 model selected |
| 7118 | | |
| 7119 | | > view matrix models |
| 7120 | | > #11,0.033721,-0.99943,0,402.7,0.99943,0.033721,0,361.63,0,0,1,0 |
| 7121 | | |
| 7122 | | > ui mousemode right "translate selected models" |
| 7123 | | |
| 7124 | | > view matrix models |
| 7125 | | > #11,0.033721,-0.99943,0,342.47,0.99943,0.033721,0,336.17,0,0,1,0 |
| 7126 | | |
| 7127 | | > ui mousemode right "rotate selected models" |
| 7128 | | |
| 7129 | | > ui mousemode right "translate selected models" |
| 7130 | | |
| 7131 | | > view matrix models |
| 7132 | | > #11,0.033721,-0.99943,0,192.3,0.99943,0.033721,0,291.19,0,0,1,246.14 |
| 7133 | | |
| 7134 | | > ui mousemode right "rotate selected models" |
| 7135 | | |
| 7136 | | > view matrix models |
| 7137 | | > #11,-0.51418,0.84644,0.13844,201.18,0.23149,-0.018464,0.97266,293.63,0.82585,0.53217,-0.18645,245.33 |
| 7138 | | |
| 7139 | | > view matrix models |
| 7140 | | > #11,-0.81006,-0.32615,-0.48726,188.99,-0.42602,0.89837,0.10693,290.12,0.40287,0.2942,-0.86669,237.53 |
| 7141 | | |
| 7142 | | > view matrix models |
| 7143 | | > #11,0.33494,-0.93767,-0.092694,193.46,-0.049436,0.080753,-0.99551,280.02,0.94094,0.33801,-0.019308,245.85 |
| 7144 | | |
| 7145 | | > ui mousemode right "translate selected models" |
| 7146 | | |
| 7147 | | > view matrix models |
| 7148 | | > #11,0.33494,-0.93767,-0.092694,180.24,-0.049436,0.080753,-0.99551,304.01,0.94094,0.33801,-0.019308,252.33 |
| 7149 | | |
| 7150 | | > view matrix models |
| 7151 | | > #11,0.33494,-0.93767,-0.092694,182.45,-0.049436,0.080753,-0.99551,302.85,0.94094,0.33801,-0.019308,249.69 |
| 7152 | | |
| 7153 | | > ui mousemode right "rotate selected models" |
| 7154 | | |
| 7155 | | > view matrix models |
| 7156 | | > #11,0.58303,-0.77258,-0.25137,183.53,-0.12599,0.21968,-0.9674,303.46,0.80262,0.5957,0.030739,250.84 |
| 7157 | | |
| 7158 | | > ui mousemode right "translate selected models" |
| 7159 | | |
| 7160 | | > view matrix models |
| 7161 | | > #11,0.58303,-0.77258,-0.25137,394.78,-0.12599,0.21968,-0.9674,292.48,0.80262,0.5957,0.030739,322.66 |
| 7162 | | |
| 7163 | | > view matrix models |
| 7164 | | > #11,0.58303,-0.77258,-0.25137,342.1,-0.12599,0.21968,-0.9674,297.41,0.80262,0.5957,0.030739,334.03 |
| 7165 | | |
| 7166 | | > ui mousemode right "rotate selected models" |
| 7167 | | |
| 7168 | | > view matrix models |
| 7169 | | > #11,0.09807,-0.60668,0.78887,347.56,0.87809,-0.32029,-0.35548,303.05,0.46833,0.72757,0.50131,336.29 |
| 7170 | | |
| 7171 | | > ui mousemode right "translate selected models" |
| 7172 | | |
| 7173 | | > view matrix models |
| 7174 | | > #11,0.09807,-0.60668,0.78887,290.43,0.87809,-0.32029,-0.35548,305.55,0.46833,0.72757,0.50131,310.6 |
| 7175 | | |
| 7176 | | > ui mousemode right "rotate selected models" |
| 7177 | | |
| 7178 | | > view matrix models |
| 7179 | | > #11,-0.51411,-0.43145,-0.74131,278.55,-0.57073,0.81725,-0.079829,307.03,0.64028,0.38205,-0.6664,301.81 |
| 7180 | | |
| 7181 | | > ui mousemode right "translate selected models" |
| 7182 | | |
| 7183 | | > view matrix models |
| 7184 | | > #11,-0.51411,-0.43145,-0.74131,336.74,-0.57073,0.81725,-0.079829,305.08,0.64028,0.38205,-0.6664,335.87 |
| 7185 | | |
| 7186 | | > ui mousemode right "rotate selected models" |
| 7187 | | |
| 7188 | | > view matrix models |
| 7189 | | > #11,-0.5611,-0.75996,-0.32808,337.34,-0.52848,0.63395,-0.56463,301.06,0.63709,-0.14343,-0.75733,332.26 |
| 7190 | | |
| 7191 | | > ui mousemode right "translate selected models" |
| 7192 | | |
| 7193 | | > view matrix models |
| 7194 | | > #11,-0.5611,-0.75996,-0.32808,344.5,-0.52848,0.63395,-0.56463,300.61,0.63709,-0.14343,-0.75733,333.65 |
| 7195 | | |
| 7196 | | > fitmap #11 inMap #1 |
| 7197 | | |
| 7198 | | Fit molecule CopZ1_P61924.pdb (#11) to map postprocess.mrc (#1) using 1420 |
| 7199 | | atoms |
| 7200 | | average map value = 0.009085, steps = 96 |
| 7201 | | shifted from previous position = 14.2 |
| 7202 | | rotated from previous position = 39.8 degrees |
| 7203 | | atoms outside contour = 596, contour level = 0.007615 |
| 7204 | | |
| 7205 | | Position of CopZ1_P61924.pdb (#11) relative to postprocess.mrc (#1) |
| 7206 | | coordinates: |
| 7207 | | Matrix rotation and translation |
| 7208 | | -0.65612108 -0.66306754 -0.36034228 358.45599666 |
| 7209 | | 0.03304888 0.45178776 -0.89151310 302.54901226 |
| 7210 | | 0.75393163 -0.59684945 -0.27451383 333.03309009 |
| 7211 | | Axis 0.21883981 -0.82754522 0.51698941 |
| 7212 | | Axis point 141.38063663 0.00000000 344.83519421 |
| 7213 | | Rotation angle (degrees) 137.68233649 |
| 7214 | | Shift along axis 0.24603705 |
| 7215 | | |
| 7216 | | |
| 7217 | | > view matrix models |
| 7218 | | > #11,-0.65612,-0.66307,-0.36034,337.95,0.033049,0.45179,-0.89151,304.28,0.75393,-0.59685,-0.27451,334.97 |
| 7219 | | |
| 7220 | | > view matrix models |
| 7221 | | > #11,-0.65612,-0.66307,-0.36034,344.16,0.033049,0.45179,-0.89151,302.51,0.75393,-0.59685,-0.27451,317.7 |
| 7222 | | |
| 7223 | | > ui mousemode right "rotate selected models" |
| 7224 | | |
| 7225 | | > view matrix models |
| 7226 | | > #11,-0.48065,-0.76499,0.42867,349.56,0.22057,0.36766,0.90343,314.63,-0.84872,0.52879,-0.0079814,318.33 |
| 7227 | | |
| 7228 | | > ui mousemode right "translate selected models" |
| 7229 | | |
| 7230 | | > view matrix models |
| 7231 | | > #11,-0.48065,-0.76499,0.42867,359.28,0.22057,0.36766,0.90343,330.7,-0.84872,0.52879,-0.0079814,345.5 |
| 7232 | | |
| 7233 | | > view matrix models |
| 7234 | | > #11,-0.48065,-0.76499,0.42867,339.68,0.22057,0.36766,0.90343,398.75,-0.84872,0.52879,-0.0079814,358.46 |
| 7235 | | |
| 7236 | | > ui mousemode right "rotate selected models" |
| 7237 | | |
| 7238 | | > view matrix models |
| 7239 | | > #11,-0.78957,0.55823,-0.25489,341.34,-0.49154,-0.82396,-0.28192,380.83,-0.36739,-0.097305,0.92496,363.23 |
| 7240 | | |
| 7241 | | > ui mousemode right "translate selected models" |
| 7242 | | |
| 7243 | | > view matrix models |
| 7244 | | > #11,-0.78957,0.55823,-0.25489,332.99,-0.49154,-0.82396,-0.28192,351.76,-0.36739,-0.097305,0.92496,331.06 |
| 7245 | | |
| 7246 | | > ui mousemode right "translate selected models" |
| 7247 | | |
| 7248 | | > ui mousemode right "rotate selected models" |
| 7249 | | |
| 7250 | | > view matrix models |
| 7251 | | > #11,-0.027563,-0.78417,0.61993,334.61,0.56547,-0.52364,-0.63722,356.14,0.82431,0.33299,0.45786,336.08 |
| 7252 | | |
| 7253 | | > view matrix models |
| 7254 | | > #11,-0.088637,-0.99326,-0.074688,328.59,-0.18898,0.090391,-0.97781,353.87,0.97797,-0.072556,-0.19571,330.21 |
| 7255 | | |
| 7256 | | > view matrix models |
| 7257 | | > #11,-0.048357,-0.63332,-0.77238,326.28,-0.98685,0.14969,-0.060953,356.44,0.15422,0.75928,-0.63223,328.24 |
| 7258 | | |
| 7259 | | > view matrix models |
| 7260 | | > #11,0.18852,-0.98175,0.024952,330.61,-0.9579,-0.18943,-0.21575,353.63,0.21654,0.016772,-0.97613,322.04 |
| 7261 | | |
| 7262 | | > ui mousemode right "translate selected models" |
| 7263 | | |
| 7264 | | > view matrix models |
| 7265 | | > #11,0.18852,-0.98175,0.024952,349.2,-0.9579,-0.18943,-0.21575,381.13,0.21654,0.016772,-0.97613,329.2 |
| 7266 | | |
| 7267 | | > ui mousemode right "rotate selected models" |
| 7268 | | |
| 7269 | | > view matrix models |
| 7270 | | > #11,-0.30887,-0.57468,0.75786,353.97,0.69524,-0.68017,-0.23242,386,0.64903,0.4551,0.60962,344.1 |
| 7271 | | |
| 7272 | | > view matrix models |
| 7273 | | > #11,-0.33862,-0.4259,0.83902,355.22,0.68583,-0.7222,-0.089802,386.65,0.64418,0.54502,0.53665,344.12 |
| 7274 | | |
| 7275 | | > view matrix models |
| 7276 | | > #11,-0.051493,-0.83384,0.54961,352.34,0.13696,-0.55103,-0.82317,380.25,0.98924,0.032886,0.14258,340.24 |
| 7277 | | |
| 7278 | | > view matrix models |
| 7279 | | > #11,-0.35337,-0.87827,-0.32215,344.97,-0.57225,0.47536,-0.66825,383.8,0.74004,-0.051788,-0.67057,333.27 |
| 7280 | | |
| 7281 | | > ui mousemode right "translate selected models" |
| 7282 | | |
| 7283 | | > view matrix models |
| 7284 | | > #11,-0.35337,-0.87827,-0.32215,338.22,-0.57225,0.47536,-0.66825,359.87,0.74004,-0.051788,-0.67057,318.59 |
| 7285 | | |
| 7286 | | > ui mousemode right "rotate selected models" |
| 7287 | | |
| 7288 | | > view matrix models |
| 7289 | | > #11,-0.45947,-0.83498,-0.30283,338.09,-0.55681,0.53641,-0.63422,360.51,0.69199,-0.12278,-0.71138,317.69 |
| 7290 | | |
| 7291 | | > fitmap #11 inMap #1 |
| 7292 | | |
| 7293 | | Fit molecule CopZ1_P61924.pdb (#11) to map postprocess.mrc (#1) using 1420 |
| 7294 | | atoms |
| 7295 | | average map value = 0.008332, steps = 264 |
| 7296 | | shifted from previous position = 16.8 |
| 7297 | | rotated from previous position = 45.1 degrees |
| 7298 | | atoms outside contour = 725, contour level = 0.007615 |
| 7299 | | |
| 7300 | | Position of CopZ1_P61924.pdb (#11) relative to postprocess.mrc (#1) |
| 7301 | | coordinates: |
| 7302 | | Matrix rotation and translation |
| 7303 | | -0.14490497 -0.94257009 -0.30093885 343.98346956 |
| 7304 | | 0.02593039 0.30042689 -0.95345231 351.04735013 |
| 7305 | | 0.98910574 -0.14596344 -0.01909214 332.12049846 |
| 7306 | | Axis 0.44762189 -0.71512095 0.53687677 |
| 7307 | | Axis point 154.78387367 0.00000000 433.32854122 |
| 7308 | | Rotation angle (degrees) 115.58090126 |
| 7309 | | Shift along axis 81.24099907 |
| 7310 | | |
| 7311 | | |
| 7312 | | > fitmap #11 inMap #1 |
| 7313 | | |
| 7314 | | Fit molecule CopZ1_P61924.pdb (#11) to map postprocess.mrc (#1) using 1420 |
| 7315 | | atoms |
| 7316 | | average map value = 0.00833, steps = 48 |
| 7317 | | shifted from previous position = 0.0196 |
| 7318 | | rotated from previous position = 0.0437 degrees |
| 7319 | | atoms outside contour = 726, contour level = 0.007615 |
| 7320 | | |
| 7321 | | Position of CopZ1_P61924.pdb (#11) relative to postprocess.mrc (#1) |
| 7322 | | coordinates: |
| 7323 | | Matrix rotation and translation |
| 7324 | | -0.14442177 -0.94279172 -0.30047651 343.99752907 |
| 7325 | | 0.02557187 0.30000257 -0.95359559 351.05991620 |
| 7326 | | 0.98918575 -0.14540371 -0.01921796 332.11826612 |
| 7327 | | Axis 0.44801956 -0.71492170 0.53681042 |
| 7328 | | Axis point 154.93427764 0.00000000 433.34103574 |
| 7329 | | Rotation angle (degrees) 115.58302704 |
| 7330 | | Shift along axis 81.42181454 |
| 7331 | | |
| 7332 | | |
| 7333 | | > fitmap #11 inMap #1 |
| 7334 | | |
| 7335 | | Fit molecule CopZ1_P61924.pdb (#11) to map postprocess.mrc (#1) using 1420 |
| 7336 | | atoms |
| 7337 | | average map value = 0.008331, steps = 44 |
| 7338 | | shifted from previous position = 0.012 |
| 7339 | | rotated from previous position = 0.0327 degrees |
| 7340 | | atoms outside contour = 725, contour level = 0.007615 |
| 7341 | | |
| 7342 | | Position of CopZ1_P61924.pdb (#11) relative to postprocess.mrc (#1) |
| 7343 | | coordinates: |
| 7344 | | Matrix rotation and translation |
| 7345 | | -0.14462707 -0.94264711 -0.30083126 343.98854183 |
| 7346 | | 0.02599114 0.30030370 -0.95348946 351.05362745 |
| 7347 | | 0.98914482 -0.14571934 -0.01893157 332.12042077 |
| 7348 | | Axis 0.44774036 -0.71502316 0.53690824 |
| 7349 | | Axis point 154.81133413 0.00000000 433.38296097 |
| 7350 | | Rotation angle (degrees) 115.57088802 |
| 7351 | | Shift along axis 81.32426712 |
| 7352 | | |
| 7353 | | |
| 7354 | | > fitmap #11 inMap #1 |
| 7355 | | |
| 7356 | | Fit molecule CopZ1_P61924.pdb (#11) to map postprocess.mrc (#1) using 1420 |
| 7357 | | atoms |
| 7358 | | average map value = 0.008335, steps = 44 |
| 7359 | | shifted from previous position = 0.0501 |
| 7360 | | rotated from previous position = 0.0741 degrees |
| 7361 | | atoms outside contour = 723, contour level = 0.007615 |
| 7362 | | |
| 7363 | | Position of CopZ1_P61924.pdb (#11) relative to postprocess.mrc (#1) |
| 7364 | | coordinates: |
| 7365 | | Matrix rotation and translation |
| 7366 | | -0.14450379 -0.94228707 -0.30201614 343.95309313 |
| 7367 | | 0.02651760 0.30142228 -0.95312194 351.02230471 |
| 7368 | | 0.98914887 -0.14573847 -0.01856947 332.12020104 |
| 7369 | | Axis 0.44733595 -0.71537819 0.53677239 |
| 7370 | | Axis point 154.49156924 0.00000000 433.39712225 |
| 7371 | | Rotation angle (degrees) 115.51995899 |
| 7372 | | Shift along axis 81.02183476 |
| 7373 | | |
| 7374 | | |
| 7375 | | > view matrix models |
| 7376 | | > #11,0.29089,-0.90988,-0.29582,346.23,-0.40311,0.16385,-0.90036,348.56,0.86769,0.38115,-0.31912,332.6 |
| 7377 | | |
| 7378 | | > view matrix models |
| 7379 | | > #11,0.273,-0.90949,-0.31353,346.03,-0.42413,0.17875,-0.88779,348.62,0.86348,0.37534,-0.33694,332.43 |
| 7380 | | |
| 7381 | | > ui mousemode right "translate selected models" |
| 7382 | | |
| 7383 | | > view matrix models |
| 7384 | | > #11,0.273,-0.90949,-0.31353,347.03,-0.42413,0.17875,-0.88779,350.28,0.86348,0.37534,-0.33694,332.97 |
| 7385 | | |
| 7386 | | > fitmap #11 inMap #1 |
| 7387 | | |
| 7388 | | Fit molecule CopZ1_P61924.pdb (#11) to map postprocess.mrc (#1) using 1420 |
| 7389 | | atoms |
| 7390 | | average map value = 0.009324, steps = 76 |
| 7391 | | shifted from previous position = 5.69 |
| 7392 | | rotated from previous position = 7.45 degrees |
| 7393 | | atoms outside contour = 645, contour level = 0.007615 |
| 7394 | | |
| 7395 | | Position of CopZ1_P61924.pdb (#11) relative to postprocess.mrc (#1) |
| 7396 | | coordinates: |
| 7397 | | Matrix rotation and translation |
| 7398 | | 0.17020150 -0.93893062 -0.29906646 342.80776470 |
| 7399 | | -0.36434641 0.22202517 -0.90440949 353.66700232 |
| 7400 | | 0.91557804 0.26289564 -0.30430698 330.14035254 |
| 7401 | | Axis 0.65581946 -0.68241583 0.32281492 |
| 7402 | | Axis point 206.51500646 0.00000000 375.79548709 |
| 7403 | | Rotation angle (degrees) 117.13187954 |
| 7404 | | Shift along axis 90.04627202 |
| 7405 | | |
| 7406 | | |
| 7407 | | > fitmap #11 inMap #1 |
| 7408 | | |
| 7409 | | Fit molecule CopZ1_P61924.pdb (#11) to map postprocess.mrc (#1) using 1420 |
| 7410 | | atoms |
| 7411 | | average map value = 0.009324, steps = 36 |
| 7412 | | shifted from previous position = 0.0443 |
| 7413 | | rotated from previous position = 0.0688 degrees |
| 7414 | | atoms outside contour = 650, contour level = 0.007615 |
| 7415 | | |
| 7416 | | Position of CopZ1_P61924.pdb (#11) relative to postprocess.mrc (#1) |
| 7417 | | coordinates: |
| 7418 | | Matrix rotation and translation |
| 7419 | | 0.17048591 -0.93853525 -0.30014354 342.77320402 |
| 7420 | | -0.36432041 0.22297922 -0.90418522 353.65274953 |
| 7421 | | 0.91553547 0.26349926 -0.30391273 330.16427787 |
| 7422 | | Axis 0.65572471 -0.68267652 0.32245600 |
| 7423 | | Axis point 206.25290908 0.00000000 375.82290352 |
| 7424 | | Rotation angle (degrees) 117.07933445 |
| 7425 | | Shift along axis 89.79788555 |
| 7426 | | |
| 7427 | | |
| 7428 | | > fitmap #11 inMap #1 |
| 7429 | | |
| 7430 | | Fit molecule CopZ1_P61924.pdb (#11) to map postprocess.mrc (#1) using 1420 |
| 7431 | | atoms |
| 7432 | | average map value = 0.009324, steps = 44 |
| 7433 | | shifted from previous position = 0.0458 |
| 7434 | | rotated from previous position = 0.0533 degrees |
| 7435 | | atoms outside contour = 645, contour level = 0.007615 |
| 7436 | | |
| 7437 | | Position of CopZ1_P61924.pdb (#11) relative to postprocess.mrc (#1) |
| 7438 | | coordinates: |
| 7439 | | Matrix rotation and translation |
| 7440 | | 0.17019889 -0.93884863 -0.29932524 342.80974553 |
| 7441 | | -0.36430887 0.22228606 -0.90436053 353.66515969 |
| 7442 | | 0.91559346 0.26296800 -0.30419804 330.13951983 |
| 7443 | | Axis 0.65576329 -0.68249775 0.32275583 |
| 7444 | | Axis point 206.45362062 0.00000000 375.80586237 |
| 7445 | | Rotation angle (degrees) 117.12005919 |
| 7446 | | Shift along axis 89.98082632 |
| 7447 | | |
| 7448 | | |
| 7449 | | > fitmap #11 inMap #1 |
| 7450 | | |
| 7451 | | Fit molecule CopZ1_P61924.pdb (#11) to map postprocess.mrc (#1) using 1420 |
| 7452 | | atoms |
| 7453 | | average map value = 0.009324, steps = 44 |
| 7454 | | shifted from previous position = 0.0414 |
| 7455 | | rotated from previous position = 0.0377 degrees |
| 7456 | | atoms outside contour = 648, contour level = 0.007615 |
| 7457 | | |
| 7458 | | Position of CopZ1_P61924.pdb (#11) relative to postprocess.mrc (#1) |
| 7459 | | coordinates: |
| 7460 | | Matrix rotation and translation |
| 7461 | | 0.17027087 -0.93865053 -0.29990503 342.77744890 |
| 7462 | | -0.36418996 0.22285573 -0.90426822 353.65417232 |
| 7463 | | 0.91562739 0.26319294 -0.30390126 330.16355955 |
| 7464 | | Axis 0.65566088 -0.68265831 0.32262429 |
| 7465 | | Axis point 206.28107658 0.00000000 375.83806717 |
| 7466 | | Rotation angle (degrees) 117.08985859 |
| 7467 | | Shift along axis 89.83958784 |
| 7468 | | |
| 7469 | | |
| 7470 | | > fitmap #11 inMap #1 |
| 7471 | | |
| 7472 | | Fit molecule CopZ1_P61924.pdb (#11) to map postprocess.mrc (#1) using 1420 |
| 7473 | | atoms |
| 7474 | | average map value = 0.009323, steps = 48 |
| 7475 | | shifted from previous position = 0.0164 |
| 7476 | | rotated from previous position = 0.0444 degrees |
| 7477 | | atoms outside contour = 647, contour level = 0.007615 |
| 7478 | | |
| 7479 | | Position of CopZ1_P61924.pdb (#11) relative to postprocess.mrc (#1) |
| 7480 | | coordinates: |
| 7481 | | Matrix rotation and translation |
| 7482 | | 0.17044548 -0.93839188 -0.30061441 342.76603098 |
| 7483 | | -0.36428585 0.22345574 -0.90408150 353.64712017 |
| 7484 | | 0.91555675 0.26360618 -0.30375586 330.17288534 |
| 7485 | | Axis 0.65561495 -0.68283669 0.32234004 |
| 7486 | | Axis point 206.13215060 0.00000000 375.83357392 |
| 7487 | | Rotation angle (degrees) 117.06025783 |
| 7488 | | Shift along axis 89.66724627 |
| 7489 | | |
| 7490 | | |
| 7491 | | > fitmap #11 inMap #1 |
| 7492 | | |
| 7493 | | Fit molecule CopZ1_P61924.pdb (#11) to map postprocess.mrc (#1) using 1420 |
| 7494 | | atoms |
| 7495 | | average map value = 0.009324, steps = 44 |
| 7496 | | shifted from previous position = 0.0659 |
| 7497 | | rotated from previous position = 0.116 degrees |
| 7498 | | atoms outside contour = 647, contour level = 0.007615 |
| 7499 | | |
| 7500 | | Position of CopZ1_P61924.pdb (#11) relative to postprocess.mrc (#1) |
| 7501 | | coordinates: |
| 7502 | | Matrix rotation and translation |
| 7503 | | 0.16986193 -0.93907605 -0.29880280 342.81616751 |
| 7504 | | -0.36417863 0.22192805 -0.90450090 353.67028609 |
| 7505 | | 0.91570785 0.26245786 -0.30429430 330.13715823 |
| 7506 | | Axis 0.65570493 -0.68242396 0.32303033 |
| 7507 | | Axis point 206.54140774 -0.00000000 375.81317869 |
| 7508 | | Rotation angle (degrees) 117.14552928 |
| 7509 | | Shift along axis 90.07748914 |
| 7510 | | |
| 7511 | | |
| 7512 | | > fitmap #11 inMap #1 |
| 7513 | | |
| 7514 | | Fit molecule CopZ1_P61924.pdb (#11) to map postprocess.mrc (#1) using 1420 |
| 7515 | | atoms |
| 7516 | | average map value = 0.009324, steps = 48 |
| 7517 | | shifted from previous position = 0.0575 |
| 7518 | | rotated from previous position = 0.0788 degrees |
| 7519 | | atoms outside contour = 648, contour level = 0.007615 |
| 7520 | | |
| 7521 | | Position of CopZ1_P61924.pdb (#11) relative to postprocess.mrc (#1) |
| 7522 | | coordinates: |
| 7523 | | Matrix rotation and translation |
| 7524 | | 0.17029394 -0.93861252 -0.30001088 342.77150957 |
| 7525 | | -0.36419912 0.22294769 -0.90424186 353.65200714 |
| 7526 | | 0.91561945 0.26325060 -0.30387521 330.16831641 |
| 7527 | | Axis 0.65565190 -0.68268564 0.32258472 |
| 7528 | | Axis point 206.25375182 0.00000000 375.83811054 |
| 7529 | | Rotation angle (degrees) 117.08531880 |
| 7530 | | Shift along axis 89.81289917 |
| 7531 | | |
| 7532 | | |
| 7533 | | > fitmap #11 inMap #1 |
| 7534 | | |
| 7535 | | Fit molecule CopZ1_P61924.pdb (#11) to map postprocess.mrc (#1) using 1420 |
| 7536 | | atoms |
| 7537 | | average map value = 0.009324, steps = 60 |
| 7538 | | shifted from previous position = 0.0508 |
| 7539 | | rotated from previous position = 0.056 degrees |
| 7540 | | atoms outside contour = 645, contour level = 0.007615 |
| 7541 | | |
| 7542 | | Position of CopZ1_P61924.pdb (#11) relative to postprocess.mrc (#1) |
| 7543 | | coordinates: |
| 7544 | | Matrix rotation and translation |
| 7545 | | 0.17018568 -0.93891614 -0.29912093 342.80979355 |
| 7546 | | -0.36427807 0.22210233 -0.90441807 353.66731607 |
| 7547 | | 0.91560817 0.26288220 -0.30422792 330.13797895 |
| 7548 | | Axis 0.65579022 -0.68243579 0.32283212 |
| 7549 | | Axis point 206.49577920 0.00000000 375.80926708 |
| 7550 | | Rotation angle (degrees) 117.12736020 |
| 7551 | | Shift along axis 90.03522412 |
| 7552 | | |
| 7553 | | |
| 7554 | | > close #10 |
| 7555 | | |
| 7556 | | > show sel atoms |
| 7557 | | |
| 7558 | | > select subtract #11 |
| 7559 | | |
| 7560 | | Nothing selected |
| 7561 | | |
| 7562 | | > open /fs/gpfs41/lv09/fileset01/pool/pool- |
| 7563 | | > briggs/taylor/em_data/20220715_COPI_Golph/alignments/CopZ2_Q9CTG7.pdb |
| 7564 | | |
| 7565 | | CopZ2_Q9CTG7.pdb title: |
| 7566 | | Alphafold monomer V2.0 prediction for coatomer subunit ζ (Q9CTG7) [more |
| 7567 | | info...] |
| 7568 | | |
| 7569 | | Chain information for CopZ2_Q9CTG7.pdb #10 |
| 7570 | | --- |
| 7571 | | Chain | Description | UniProt |
| 7572 | | A | coatomer subunit ζ | Q9CTG7_MOUSE |
| 7573 | | |
| 7574 | | |
| 7575 | | > color #10 yellow |
| 7576 | | |
| 7577 | | > color #10 #ffe415ff |
| 7578 | | |
| 7579 | | > select add #10 |
| 7580 | | |
| 7581 | | 1463 atoms, 1486 bonds, 185 residues, 1 model selected |
| 7582 | | |
| 7583 | | > select add #11 |
| 7584 | | |
| 7585 | | 2883 atoms, 2927 bonds, 362 residues, 2 models selected |
| 7586 | | |
| 7587 | | > view orient |
| 7588 | | |
| 7589 | | > select subtract #11 |
| 7590 | | |
| 7591 | | 1463 atoms, 1486 bonds, 185 residues, 1 model selected |
| 7592 | | |
| 7593 | | > view matrix models #10,1,0,0,381.07,0,1,0,383.04,0,0,1,0 |
| 7594 | | |
| 7595 | | > view orient |
| 7596 | | |
| 7597 | | > view matrix models #10,1,0,0,374.85,0,1,0,378.42,0,0,1,0 |
| 7598 | | |
| 7599 | | > select subtract #10 |
| 7600 | | |
| 7601 | | Nothing selected |
| 7602 | | |
| 7603 | | > select add #11 |
| 7604 | | |
| 7605 | | 1420 atoms, 1441 bonds, 177 residues, 1 model selected |
| 7606 | | |
| 7607 | | > hide sel atoms |
| 7608 | | |
| 7609 | | > select add #10 |
| 7610 | | |
| 7611 | | 2883 atoms, 2927 bonds, 362 residues, 2 models selected |
| 7612 | | |
| 7613 | | > select subtract #11 |
| 7614 | | |
| 7615 | | 1463 atoms, 1486 bonds, 185 residues, 1 model selected |
| 7616 | | |
| 7617 | | > view matrix models #10,1,0,0,287.93,0,1,0,328.63,0,0,1,0 |
| 7618 | | |
| 7619 | | > view matrix models #10,1,0,0,343.95,0,1,0,332.78,0,0,1,0 |
| 7620 | | |
| 7621 | | > view matrix models #10,1,0,0,442.15,0,1,0,335.46,0,0,1,301.19 |
| 7622 | | |
| 7623 | | > view matrix models #10,1,0,0,352.81,0,1,0,346.86,0,0,1,274.44 |
| 7624 | | |
| 7625 | | > view matrix models #10,1,0,0,352.92,0,1,0,347.76,0,0,1,274.36 |
| 7626 | | |
| 7627 | | > ui mousemode right "rotate selected models" |
| 7628 | | |
| 7629 | | > view matrix models |
| 7630 | | > #10,0.049529,-0.98686,-0.15383,367.71,0.92397,-0.013207,0.38223,361.26,-0.37924,-0.16106,0.91117,276.98 |
| 7631 | | |
| 7632 | | > view matrix models |
| 7633 | | > #10,0.24183,0.79508,0.5562,349,0.27062,0.49521,-0.82555,347.26,-0.93182,0.35016,-0.09541,264.17 |
| 7634 | | |
| 7635 | | > view matrix models |
| 7636 | | > #10,-0.88773,0.42149,0.18513,354.56,-0.46024,-0.8036,-0.37738,370.13,-0.01029,-0.42022,0.90737,279.24 |
| 7637 | | |
| 7638 | | > view matrix models |
| 7639 | | > #10,0.5523,0.81779,0.16183,344.72,-0.71469,0.36455,0.59692,362.94,0.42916,-0.44534,0.78581,277.29 |
| 7640 | | |
| 7641 | | > view matrix models |
| 7642 | | > #10,0.82717,-0.023948,-0.56144,349.45,0.41989,0.69033,0.58918,355.09,0.37347,-0.7231,0.58108,279.56 |
| 7643 | | |
| 7644 | | > fitmap #10 inMap #1 |
| 7645 | | |
| 7646 | | Fit molecule CopZ2_Q9CTG7.pdb (#10) to map postprocess.mrc (#1) using 1463 |
| 7647 | | atoms |
| 7648 | | average map value = 0.006114, steps = 140 |
| 7649 | | shifted from previous position = 23.5 |
| 7650 | | rotated from previous position = 38.2 degrees |
| 7651 | | atoms outside contour = 1092, contour level = 0.007615 |
| 7652 | | |
| 7653 | | Position of CopZ2_Q9CTG7.pdb (#10) relative to postprocess.mrc (#1) |
| 7654 | | coordinates: |
| 7655 | | Matrix rotation and translation |
| 7656 | | 0.88402019 -0.44961589 -0.12788222 332.64950901 |
| 7657 | | 0.37717743 0.52448779 0.76331498 348.95649289 |
| 7658 | | -0.27612588 -0.72302014 0.63324276 291.78912770 |
| 7659 | | Axis -0.87059401 0.08683105 0.48427929 |
| 7660 | | Axis point 0.00000000 548.10741163 -129.13457334 |
| 7661 | | Rotation angle (degrees) 58.60901243 |
| 7662 | | Shift along axis -117.99497945 |
| 7663 | | |
| 7664 | | |
| 7665 | | > view matrix models |
| 7666 | | > #10,-0.26989,-0.4414,-0.85576,330.49,0.71571,-0.6865,0.12838,359.06,-0.64414,-0.57783,0.50119,289.98 |
| 7667 | | |
| 7668 | | > view matrix models |
| 7669 | | > #10,-0.51279,0.85245,-0.10185,319.91,-0.65826,-0.46656,-0.59078,354.84,-0.55112,-0.2359,0.80038,287.47 |
| 7670 | | |
| 7671 | | > view matrix models |
| 7672 | | > #10,0.54499,0.69903,0.46297,323.03,-0.80542,0.58993,0.057372,346.3,-0.23302,-0.40415,0.88451,289.37 |
| 7673 | | |
| 7674 | | > ui mousemode right "translate selected models" |
| 7675 | | |
| 7676 | | > view matrix models |
| 7677 | | > #10,0.54499,0.69903,0.46297,343.94,-0.80542,0.58993,0.057372,355.86,-0.23302,-0.40415,0.88451,294.19 |
| 7678 | | |
| 7679 | | > view matrix models |
| 7680 | | > #10,0.54499,0.69903,0.46297,341.13,-0.80542,0.58993,0.057372,354.09,-0.23302,-0.40415,0.88451,293.59 |
| 7681 | | |
| 7682 | | > fitmap #10 inMap #1 |
| 7683 | | |
| 7684 | | Fit molecule CopZ2_Q9CTG7.pdb (#10) to map postprocess.mrc (#1) using 1463 |
| 7685 | | atoms |
| 7686 | | average map value = 0.006546, steps = 212 |
| 7687 | | shifted from previous position = 30.4 |
| 7688 | | rotated from previous position = 20.4 degrees |
| 7689 | | atoms outside contour = 1021, contour level = 0.007615 |
| 7690 | | |
| 7691 | | Position of CopZ2_Q9CTG7.pdb (#10) relative to postprocess.mrc (#1) |
| 7692 | | coordinates: |
| 7693 | | Matrix rotation and translation |
| 7694 | | 0.73669002 0.63643510 0.22855680 312.27083288 |
| 7695 | | -0.67533922 0.67507429 0.29697081 348.51516327 |
| 7696 | | 0.03470983 -0.37312879 0.92713006 296.97660948 |
| 7697 | | Axis -0.45102704 0.13047348 -0.88292201 |
| 7698 | | Axis point 583.20033603 4.03637851 0.00000000 |
| 7699 | | Rotation angle (degrees) 47.97558826 |
| 7700 | | Shift along axis -357.57779045 |
| 7701 | | |
| 7702 | | |
| 7703 | | > view matrix models |
| 7704 | | > #10,0.73669,0.63644,0.22856,383.16,-0.67534,0.67507,0.29697,346.7,0.03471,-0.37313,0.92713,317.35 |
| 7705 | | |
| 7706 | | > ui mousemode right "rotate selected models" |
| 7707 | | |
| 7708 | | > view matrix models |
| 7709 | | > #10,-0.8917,-0.024931,-0.45195,391.69,-0.25601,0.85121,0.45815,344.32,0.37328,0.52423,-0.76541,291.43 |
| 7710 | | |
| 7711 | | > view matrix models |
| 7712 | | > #10,-0.97734,-0.20479,-0.053647,397.39,-0.20905,0.89367,0.39706,343.14,-0.033368,0.39927,-0.91623,293.17 |
| 7713 | | |
| 7714 | | > view matrix models |
| 7715 | | > #10,-0.97068,-0.24034,0.0048746,398.29,-0.20106,0.82284,0.53151,345.09,-0.13175,0.51494,-0.84704,292.48 |
| 7716 | | |
| 7717 | | > ui mousemode right "translate selected models" |
| 7718 | | |
| 7719 | | > view matrix models |
| 7720 | | > #10,-0.97068,-0.24034,0.0048746,348.48,-0.20106,0.82284,0.53151,350.59,-0.13175,0.51494,-0.84704,277.67 |
| 7721 | | |
| 7722 | | > ui mousemode right "translate selected models" |
| 7723 | | |
| 7724 | | > view matrix models |
| 7725 | | > #10,-0.97068,-0.24034,0.0048746,337.99,-0.20106,0.82284,0.53151,341.33,-0.13175,0.51494,-0.84704,377.83 |
| 7726 | | |
| 7727 | | > view matrix models |
| 7728 | | > #10,-0.97068,-0.24034,0.0048746,336.87,-0.20106,0.82284,0.53151,331.98,-0.13175,0.51494,-0.84704,365.23 |
| 7729 | | |
| 7730 | | > view matrix models |
| 7731 | | > #10,-0.97068,-0.24034,0.0048746,341.4,-0.20106,0.82284,0.53151,354.03,-0.13175,0.51494,-0.84704,372.18 |
| 7732 | | |
| 7733 | | > ui mousemode right "rotate selected models" |
| 7734 | | |
| 7735 | | > view matrix models |
| 7736 | | > #10,-0.73008,-0.61764,-0.29242,343.37,-0.66372,0.53902,0.5186,359.11,-0.16269,0.5727,-0.80346,371.84 |
| 7737 | | |
| 7738 | | > view matrix models |
| 7739 | | > #10,-0.71629,-0.64127,-0.27513,343.78,-0.64312,0.45368,0.6169,360.93,-0.27078,0.61882,-0.73739,372.07 |
| 7740 | | |
| 7741 | | > view matrix models |
| 7742 | | > #10,-0.69961,-0.66511,-0.2611,344.15,-0.60849,0.36304,0.70565,362.7,-0.37454,0.65256,-0.6587,372.55 |
| 7743 | | |
| 7744 | | > view matrix models |
| 7745 | | > #10,-0.74234,-0.5056,-0.43965,340.8,-0.49638,0.85574,-0.14598,349.3,0.45004,0.10987,-0.88623,375.45 |
| 7746 | | |
| 7747 | | > ui mousemode right "translate selected models" |
| 7748 | | |
| 7749 | | > view matrix models |
| 7750 | | > #10,-0.74234,-0.5056,-0.43965,345.65,-0.49638,0.85574,-0.14598,353.04,0.45004,0.10987,-0.88623,327.68 |
| 7751 | | |
| 7752 | | > fitmap #10 inMap #1 |
| 7753 | | |
| 7754 | | Fit molecule CopZ2_Q9CTG7.pdb (#10) to map postprocess.mrc (#1) using 1463 |
| 7755 | | atoms |
| 7756 | | average map value = 0.007804, steps = 112 |
| 7757 | | shifted from previous position = 6.03 |
| 7758 | | rotated from previous position = 23.2 degrees |
| 7759 | | atoms outside contour = 796, contour level = 0.007615 |
| 7760 | | |
| 7761 | | Position of CopZ2_Q9CTG7.pdb (#10) relative to postprocess.mrc (#1) |
| 7762 | | coordinates: |
| 7763 | | Matrix rotation and translation |
| 7764 | | -0.85055957 -0.31374086 -0.42203688 342.67631914 |
| 7765 | | -0.44282855 0.86016552 0.25301816 354.86177316 |
| 7766 | | 0.28363943 0.40209699 -0.87055541 331.35797852 |
| 7767 | | Axis 0.20346164 -0.96310161 -0.17617790 |
| 7768 | | Axis point 181.91062897 0.00000000 173.60700899 |
| 7769 | | Rotation angle (degrees) 158.50893683 |
| 7770 | | Shift along axis -330.42441065 |
| 7771 | | |
| 7772 | | |
| 7773 | | > show #!1 models |
| 7774 | | |
| 7775 | | > hide #!1 models |
| 7776 | | |
| 7777 | | > select subtract #10 |
| 7778 | | |
| 7779 | | Nothing selected |
| 7780 | | |
| 7781 | | > select add #10 |
| 7782 | | |
| 7783 | | 1463 atoms, 1486 bonds, 185 residues, 1 model selected |
| 7784 | | |
| 7785 | | > hide #11 models |
| 7786 | | |
| 7787 | | > show #11 models |
| 7788 | | |
| 7789 | | > hide #11 models |
| 7790 | | |
| 7791 | | > show #11 models |
| 7792 | | |
| 7793 | | > view matrix models |
| 7794 | | > #10,-0.85056,-0.31374,-0.42204,333.72,-0.44283,0.86017,0.25302,310.44,0.28364,0.4021,-0.87056,315.16 |
| 7795 | | |
| 7796 | | > view matrix models |
| 7797 | | > #10,-0.85056,-0.31374,-0.42204,336.02,-0.44283,0.86017,0.25302,319.56,0.28364,0.4021,-0.87056,312.93 |
| 7798 | | |
| 7799 | | > ui mousemode right "rotate selected models" |
| 7800 | | |
| 7801 | | > view matrix models |
| 7802 | | > #10,-0.67283,-0.69984,-0.23984,341.99,-0.66918,0.71396,-0.20605,318.66,0.31544,0.021855,-0.94869,317.26 |
| 7803 | | |
| 7804 | | > view matrix models |
| 7805 | | > #10,-0.73416,0.48102,0.4792,332.08,0.52731,0.84854,-0.043894,314.45,-0.42773,0.22046,-0.87661,317.47 |
| 7806 | | |
| 7807 | | > view matrix models |
| 7808 | | > #10,-0.76341,0.50277,-0.4055,325.08,0.44947,0.86436,0.22552,316.55,0.46388,-0.010097,-0.88584,317.71 |
| 7809 | | |
| 7810 | | > view matrix models |
| 7811 | | > #10,-0.87394,0.32299,-0.36318,328.12,0.39525,0.90716,-0.14434,313.31,0.28284,-0.26969,-0.92047,321.43 |
| 7812 | | |
| 7813 | | > ui mousemode right "translate selected models" |
| 7814 | | |
| 7815 | | > view matrix models |
| 7816 | | > #10,-0.87394,0.32299,-0.36318,341.44,0.39525,0.90716,-0.14434,354.81,0.28284,-0.26969,-0.92047,330.58 |
| 7817 | | |
| 7818 | | > fitmap #10 inMap #1 |
| 7819 | | |
| 7820 | | Fit molecule CopZ2_Q9CTG7.pdb (#10) to map postprocess.mrc (#1) using 1463 |
| 7821 | | atoms |
| 7822 | | average map value = 0.009525, steps = 80 |
| 7823 | | shifted from previous position = 1.71 |
| 7824 | | rotated from previous position = 9.08 degrees |
| 7825 | | atoms outside contour = 688, contour level = 0.007615 |
| 7826 | | |
| 7827 | | Position of CopZ2_Q9CTG7.pdb (#10) relative to postprocess.mrc (#1) |
| 7828 | | coordinates: |
| 7829 | | Matrix rotation and translation |
| 7830 | | -0.82108011 0.27510216 -0.50014626 341.74342227 |
| 7831 | | 0.40712094 0.89639270 -0.17530741 354.41739312 |
| 7832 | | 0.40010001 -0.34756144 -0.84801006 329.40214578 |
| 7833 | | Axis -0.18601212 -0.97214979 0.14256325 |
| 7834 | | Axis point 88.87915642 0.00000000 225.35054236 |
| 7835 | | Rotation angle (degrees) 152.41795576 |
| 7836 | | Shift along axis -361.15457305 |
| 7837 | | |
| 7838 | | |
| 7839 | | > fitmap #10 inMap #1 |
| 7840 | | |
| 7841 | | Fit molecule CopZ2_Q9CTG7.pdb (#10) to map postprocess.mrc (#1) using 1463 |
| 7842 | | atoms |
| 7843 | | average map value = 0.009525, steps = 40 |
| 7844 | | shifted from previous position = 0.041 |
| 7845 | | rotated from previous position = 0.0584 degrees |
| 7846 | | atoms outside contour = 688, contour level = 0.007615 |
| 7847 | | |
| 7848 | | Position of CopZ2_Q9CTG7.pdb (#10) relative to postprocess.mrc (#1) |
| 7849 | | coordinates: |
| 7850 | | Matrix rotation and translation |
| 7851 | | -0.82147696 0.27547367 -0.49928938 341.77800489 |
| 7852 | | 0.40709792 0.89642205 -0.17521079 354.42904198 |
| 7853 | | 0.39930805 -0.34719129 -0.84853481 329.39090309 |
| 7854 | | Axis -0.18606033 -0.97216447 0.14240015 |
| 7855 | | Axis point 88.99506313 0.00000000 225.24288376 |
| 7856 | | Rotation angle (degrees) 152.47321208 |
| 7857 | | Shift along axis -361.24933356 |
| 7858 | | |
| 7859 | | |
| 7860 | | > fitmap #10 inMap #1 |
| 7861 | | |
| 7862 | | Fit molecule CopZ2_Q9CTG7.pdb (#10) to map postprocess.mrc (#1) using 1463 |
| 7863 | | atoms |
| 7864 | | average map value = 0.009525, steps = 28 |
| 7865 | | shifted from previous position = 0.0496 |
| 7866 | | rotated from previous position = 0.0357 degrees |
| 7867 | | atoms outside contour = 687, contour level = 0.007615 |
| 7868 | | |
| 7869 | | Position of CopZ2_Q9CTG7.pdb (#10) relative to postprocess.mrc (#1) |
| 7870 | | coordinates: |
| 7871 | | Matrix rotation and translation |
| 7872 | | -0.82127964 0.27516259 -0.49978528 341.73563276 |
| 7873 | | 0.40703624 0.89642670 -0.17533027 354.41459269 |
| 7874 | | 0.39977654 -0.34742590 -0.84821813 329.40793045 |
| 7875 | | Axis -0.18598478 -0.97216185 0.14251664 |
| 7876 | | Axis point 88.92474209 0.00000000 225.31390781 |
| 7877 | | Rotation angle (degrees) 152.44108053 |
| 7878 | | Shift along axis -361.15986104 |
| 7879 | | |
| 7880 | | |
| 7881 | | > select subtract #10 |
| 7882 | | |
| 7883 | | Nothing selected |
| 7884 | | |
| 7885 | | > select add #10 |
| 7886 | | |
| 7887 | | 1463 atoms, 1486 bonds, 185 residues, 1 model selected |
| 7888 | | |
| 7889 | | > select add #11 |
| 7890 | | |
| 7891 | | 2883 atoms, 2927 bonds, 362 residues, 2 models selected |
| 7892 | | |
| 7893 | | > select subtract #11 |
| 7894 | | |
| 7895 | | 1463 atoms, 1486 bonds, 185 residues, 1 model selected |
| 7896 | | |
| 7897 | | > select subtract #10 |
| 7898 | | |
| 7899 | | Nothing selected |
| 7900 | | |
| 7901 | | > show #!1 models |
| 7902 | | |
| 7903 | | > hide #10 models |
| 7904 | | |
| 7905 | | > hide #11 models |
| 7906 | | |
| 7907 | | > show #11 models |
| 7908 | | |
| 7909 | | > show #10 models |
| 7910 | | |
| 7911 | | > select add #10 |
| 7912 | | |
| 7913 | | 1463 atoms, 1486 bonds, 185 residues, 1 model selected |
| 7914 | | |
| 7915 | | > select add #11 |
| 7916 | | |
| 7917 | | 2883 atoms, 2927 bonds, 362 residues, 2 models selected |
| 7918 | | |
| 7919 | | > show sel atoms |
| 7920 | | |
| 7921 | | > select subtract #10 |
| 7922 | | |
| 7923 | | 1420 atoms, 1441 bonds, 177 residues, 1 model selected |
| 7924 | | |
| 7925 | | > select subtract #11 |
| 7926 | | |
| 7927 | | Nothing selected |
| 7928 | | |
| 7929 | | > hide #10 models |
| 7930 | | |
| 7931 | | > hide #11 models |
| 7932 | | |
| 7933 | | > open /fs/gpfs41/lv09/fileset01/pool/pool- |
| 7934 | | > briggs/taylor/em_data/20220715_COPI_Golph/alignments/CopBprime_O55029.pdb |
| 7935 | | |
| 7936 | | CopBprime_O55029.pdb title: |
| 7937 | | Alphafold monomer V2.0 prediction for coatomer subunit β' (O55029) [more |
| 7938 | | info...] |
| 7939 | | |
| 7940 | | Chain information for CopBprime_O55029.pdb #14 |
| 7941 | | --- |
| 7942 | | Chain | Description | UniProt |
| 7943 | | A | coatomer subunit β' | COPB2_MOUSE |
| 7944 | | |
| 7945 | | |
| 7946 | | > color #14 cyan |
| 7947 | | |
| 7948 | | > view orient |
| 7949 | | |
| 7950 | | > show #4 models |
| 7951 | | |
| 7952 | | > select add #14 |
| 7953 | | |
| 7954 | | 7214 atoms, 7373 bonds, 905 residues, 1 model selected |
| 7955 | | |
| 7956 | | > view matrix models #14,1,0,0,228.73,0,1,0,248.76,0,0,1,0 |
| 7957 | | |
| 7958 | | > view matrix models #14,1,0,0,235.96,0,1,0,297.18,0,0,1,356.32 |
| 7959 | | |
| 7960 | | > hide #!1 models |
| 7961 | | |
| 7962 | | > view matrix models #14,1,0,0,301.49,0,1,0,292.72,0,0,1,337.83 |
| 7963 | | |
| 7964 | | > ui mousemode right "rotate selected models" |
| 7965 | | |
| 7966 | | > view matrix models |
| 7967 | | > #14,0.21105,0.30599,-0.92835,315.42,-0.013511,-0.94873,-0.31578,302.41,-0.97738,0.079188,-0.19609,356.54 |
| 7968 | | |
| 7969 | | > ui mousemode right "translate selected models" |
| 7970 | | |
| 7971 | | > view matrix models |
| 7972 | | > #14,0.21105,0.30599,-0.92835,308.04,-0.013511,-0.94873,-0.31578,302.09,-0.97738,0.079188,-0.19609,359.62 |
| 7973 | | |
| 7974 | | > ui mousemode right "rotate selected models" |
| 7975 | | |
| 7976 | | > view matrix models |
| 7977 | | > #14,0.074611,0.028571,-0.9968,308.5,-0.41122,-0.90976,-0.056856,291.17,-0.90848,0.41415,-0.056129,356.57 |
| 7978 | | |
| 7979 | | > view matrix models |
| 7980 | | > #14,0.18837,-0.019388,-0.98191,309.45,-0.35781,-0.93244,-0.050231,291.62,-0.9146,0.3608,-0.18258,359.7 |
| 7981 | | |
| 7982 | | > ui mousemode right "translate selected models" |
| 7983 | | |
| 7984 | | > view matrix models |
| 7985 | | > #14,0.18837,-0.019388,-0.98191,300.67,-0.35781,-0.93244,-0.050231,285.78,-0.9146,0.3608,-0.18258,358.06 |
| 7986 | | |
| 7987 | | > ui mousemode right "rotate selected models" |
| 7988 | | |
| 7989 | | > view matrix models |
| 7990 | | > #14,0.13765,0.068029,-0.98814,300.17,-0.0062466,-0.99756,-0.069548,290.26,-0.99046,0.015746,-0.13689,356.43 |
| 7991 | | |
| 7992 | | > view matrix models |
| 7993 | | > #14,0.086001,-0.061835,-0.99437,299.88,0.12356,-0.9897,0.072231,288.18,-0.9886,-0.12908,-0.077476,355.12 |
| 7994 | | |
| 7995 | | > fitmap #14 inMap #1 |
| 7996 | | |
| 7997 | | Fit molecule CopBprime_O55029.pdb (#14) to map postprocess.mrc (#1) using 7214 |
| 7998 | | atoms |
| 7999 | | average map value = 0.008523, steps = 108 |
| 8000 | | shifted from previous position = 4.16 |
| 8001 | | rotated from previous position = 18.4 degrees |
| 8002 | | atoms outside contour = 3124, contour level = 0.007615 |
| 8003 | | |
| 8004 | | Position of CopBprime_O55029.pdb (#14) relative to postprocess.mrc (#1) |
| 8005 | | coordinates: |
| 8006 | | Matrix rotation and translation |
| 8007 | | -0.17477003 -0.17847582 -0.96829841 300.34041736 |
| 8008 | | -0.01134919 -0.98300368 0.18323471 289.60827762 |
| 8009 | | -0.98454387 0.04301334 0.16977402 350.79324012 |
| 8010 | | Axis -0.64097385 0.07426053 0.76396197 |
| 8011 | | Axis point 287.19131626 140.76950562 0.00000000 |
| 8012 | | Rotation angle (degrees) 173.72033654 |
| 8013 | | Shift along axis 96.98880360 |
| 8014 | | |
| 8015 | | |
| 8016 | | > fitmap #14 inMap #1 |
| 8017 | | |
| 8018 | | Fit molecule CopBprime_O55029.pdb (#14) to map postprocess.mrc (#1) using 7214 |
| 8019 | | atoms |
| 8020 | | average map value = 0.008523, steps = 48 |
| 8021 | | shifted from previous position = 0.0108 |
| 8022 | | rotated from previous position = 0.0055 degrees |
| 8023 | | atoms outside contour = 3124, contour level = 0.007615 |
| 8024 | | |
| 8025 | | Position of CopBprime_O55029.pdb (#14) relative to postprocess.mrc (#1) |
| 8026 | | coordinates: |
| 8027 | | Matrix rotation and translation |
| 8028 | | -0.17471715 -0.17850967 -0.96830171 300.34609995 |
| 8029 | | -0.01127211 -0.98300107 0.18325345 289.59931761 |
| 8030 | | -0.98455414 0.04293233 0.16973497 350.79135670 |
| 8031 | | Axis -0.64099264 0.07424175 0.76394803 |
| 8032 | | Axis point 287.19342385 140.77805503 0.00000000 |
| 8033 | | Rotation angle (degrees) 173.71603635 |
| 8034 | | Shift along axis 96.96708375 |
| 8035 | | |
| 8036 | | |
| 8037 | | > fitmap #14 inMap #1 |
| 8038 | | |
| 8039 | | Fit molecule CopBprime_O55029.pdb (#14) to map postprocess.mrc (#1) using 7214 |
| 8040 | | atoms |
| 8041 | | average map value = 0.008522, steps = 44 |
| 8042 | | shifted from previous position = 0.0494 |
| 8043 | | rotated from previous position = 0.0198 degrees |
| 8044 | | atoms outside contour = 3123, contour level = 0.007615 |
| 8045 | | |
| 8046 | | Position of CopBprime_O55029.pdb (#14) relative to postprocess.mrc (#1) |
| 8047 | | coordinates: |
| 8048 | | Matrix rotation and translation |
| 8049 | | -0.17494710 -0.17852356 -0.96825763 300.31865683 |
| 8050 | | -0.01101722 -0.98300764 0.18323372 289.63800088 |
| 8051 | | -0.98451619 0.04272372 0.17000751 350.80696897 |
| 8052 | | Axis -0.64089853 0.07415902 0.76403502 |
| 8053 | | Axis point 287.13230492 140.83588199 0.00000000 |
| 8054 | | Rotation angle (degrees) 173.70661595 |
| 8055 | | Shift along axis 97.03429488 |
| 8056 | | |
| 8057 | | |
| 8058 | | > show sel atoms |
| 8059 | | |
| 8060 | | > close #4 |
| 8061 | | |
| 8062 | | > select subtract #14 |
| 8063 | | |
| 8064 | | Nothing selected |
| 8065 | | |
| 8066 | | > hide #14 models |
| 8067 | | |
| 8068 | | > show #3 models |
| 8069 | | |
| 8070 | | > hide #3 atoms |
| 8071 | | |
| 8072 | | > open /fs/gpfs41/lv09/fileset01/pool/pool- |
| 8073 | | > briggs/taylor/em_data/20220715_COPI_Golph/alignments/CopA-F8WHL2.pdb |
| 8074 | | |
| 8075 | | QXcbConnection: XCB error: 3 (BadWindow), sequence: 30554, resource id: |
| 8076 | | 16942318, major code: 40 (TranslateCoords), minor code: 0 |
| 8077 | | |
| 8078 | | > view orient |
| 8079 | | |
| 8080 | | > open /fs/gpfs41/lv09/fileset01/pool/pool- |
| 8081 | | > briggs/taylor/em_data/20220715_COPI_Golph/alignments/CopA-F8WHL2.pdb |
| 8082 | | |
| 8083 | | QXcbConnection: XCB error: 3 (BadWindow), sequence: 32143, resource id: |
| 8084 | | 16942568, major code: 40 (TranslateCoords), minor code: 0 |
| 8085 | | |
| 8086 | | > hide #3 models |
| 8087 | | |
| 8088 | | > open "/fs/gpfs41/lv09/fileset01/pool/pool- |
| 8089 | | > briggs/taylor/em_data/20220715_COPI_Golph/alignments/CopB_ Q9JIF7.pdb" |
| 8090 | | |
| 8091 | | CopB_ Q9JIF7.pdb title: |
| 8092 | | Alphafold monomer V2.0 prediction for coatomer subunit β (Q9JIF7) [more |
| 8093 | | info...] |
| 8094 | | |
| 8095 | | Chain information for CopB_ Q9JIF7.pdb #4 |
| 8096 | | --- |
| 8097 | | Chain | Description | UniProt |
| 8098 | | A | coatomer subunit β | COPB_MOUSE |
| 8099 | | |
| 8100 | | |
| 8101 | | > color #4 #005500ff |
| 8102 | | |
| 8103 | | > view orient |
| 8104 | | |
| 8105 | | > show #5 models |
| 8106 | | |
| 8107 | | > select add #5 |
| 8108 | | |
| 8109 | | 7501 atoms, 7619 bonds, 953 residues, 1 model selected |
| 8110 | | |
| 8111 | | > select add #4 |
| 8112 | | |
| 8113 | | 15002 atoms, 15238 bonds, 1906 residues, 2 models selected |
| 8114 | | |
| 8115 | | > view orient |
| 8116 | | |
| 8117 | | > select subtract #5 |
| 8118 | | |
| 8119 | | 7501 atoms, 7619 bonds, 953 residues, 1 model selected |
| 8120 | | |
| 8121 | | > show #!1 models |
| 8122 | | |
| 8123 | | > ui mousemode right "translate selected models" |
| 8124 | | |
| 8125 | | > view matrix models #4,1,0,0,283.85,0,1,0,328.89,0,0,1,0 |
| 8126 | | |
| 8127 | | > view matrix models #4,1,0,0,347.13,0,1,0,311.6,0,0,1,341.24 |
| 8128 | | |
| 8129 | | > view orient |
| 8130 | | |
| 8131 | | > hide #!1 models |
| 8132 | | |
| 8133 | | > view orient |
| 8134 | | |
| 8135 | | > view matrix models #4,1,0,0,289.86,0,1,0,314.18,0,0,1,310.57 |
| 8136 | | |
| 8137 | | > select subtract #4 |
| 8138 | | |
| 8139 | | Nothing selected |
| 8140 | | |
| 8141 | | > select add #5 |
| 8142 | | |
| 8143 | | 7501 atoms, 7619 bonds, 953 residues, 1 model selected |
| 8144 | | |
| 8145 | | > hide sel atoms |
| 8146 | | |
| 8147 | | > select add #4 |
| 8148 | | |
| 8149 | | 15002 atoms, 15238 bonds, 1906 residues, 2 models selected |
| 8150 | | |
| 8151 | | > select subtract #5 |
| 8152 | | |
| 8153 | | 7501 atoms, 7619 bonds, 953 residues, 1 model selected |
| 8154 | | |
| 8155 | | > ui mousemode right "rotate selected models" |
| 8156 | | |
| 8157 | | > view matrix models |
| 8158 | | > #4,-0.28068,-0.70115,0.65544,293.98,-0.1319,0.70459,0.69724,311.51,-0.9507,0.10925,-0.29025,322.36 |
| 8159 | | |
| 8160 | | > ui mousemode right "translate selected models" |
| 8161 | | |
| 8162 | | > view matrix models |
| 8163 | | > #4,-0.28068,-0.70115,0.65544,299.54,-0.1319,0.70459,0.69724,319.17,-0.9507,0.10925,-0.29025,324.3 |
| 8164 | | |
| 8165 | | > ui mousemode right "rotate selected models" |
| 8166 | | |
| 8167 | | > view matrix models |
| 8168 | | > #4,0.65201,-0.54033,0.53191,295.35,-0.25785,0.5017,0.82572,319.53,-0.71301,-0.67553,0.18779,322.32 |
| 8169 | | |
| 8170 | | > ui mousemode right "translate selected models" |
| 8171 | | |
| 8172 | | > view matrix models |
| 8173 | | > #4,0.65201,-0.54033,0.53191,291.14,-0.25785,0.5017,0.82572,325.2,-0.71301,-0.67553,0.18779,351.76 |
| 8174 | | |
| 8175 | | > ui mousemode right "rotate selected models" |
| 8176 | | |
| 8177 | | > view matrix models |
| 8178 | | > #4,0.4548,-0.87158,0.18304,294.92,-0.12085,0.14322,0.98228,324.51,-0.88236,-0.46886,-0.040194,353.38 |
| 8179 | | |
| 8180 | | > ui mousemode right "translate selected models" |
| 8181 | | |
| 8182 | | > view matrix models |
| 8183 | | > #4,0.4548,-0.87158,0.18304,276.95,-0.12085,0.14322,0.98228,324.55,-0.88236,-0.46886,-0.040194,336.28 |
| 8184 | | |
| 8185 | | > ui mousemode right "rotate selected models" |
| 8186 | | |
| 8187 | | > view matrix models |
| 8188 | | > #4,-0.069656,-0.65121,0.7557,275.62,-0.1579,0.75518,0.63621,325.22,-0.98499,-0.075011,-0.15543,336.47 |
| 8189 | | |
| 8190 | | > fitmap #4 inMap #1 |
| 8191 | | |
| 8192 | | Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 7501 |
| 8193 | | atoms |
| 8194 | | average map value = 0.006862, steps = 92 |
| 8195 | | shifted from previous position = 13.5 |
| 8196 | | rotated from previous position = 14.7 degrees |
| 8197 | | atoms outside contour = 4266, contour level = 0.007615 |
| 8198 | | |
| 8199 | | Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1) |
| 8200 | | coordinates: |
| 8201 | | Matrix rotation and translation |
| 8202 | | -0.02361329 -0.71170813 0.70207831 283.50221234 |
| 8203 | | 0.07555118 0.69899545 0.71112403 323.06318360 |
| 8204 | | -0.99686229 0.06983482 0.03726481 346.61824676 |
| 8205 | | Axis -0.32400626 0.85837621 0.39775650 |
| 8206 | | Axis point 312.61014964 -0.00000000 -97.23838407 |
| 8207 | | Rotation angle (degrees) 98.26064659 |
| 8208 | | Shift along axis 323.32291623 |
| 8209 | | |
| 8210 | | |
| 8211 | | > view matrix models |
| 8212 | | > #4,-0.039282,-0.61847,0.78483,282.87,-0.17399,0.77767,0.60412,324.69,-0.98396,-0.11282,-0.13815,348.02 |
| 8213 | | |
| 8214 | | > ui mousemode right "translate selected models" |
| 8215 | | |
| 8216 | | > view matrix models |
| 8217 | | > #4,-0.039282,-0.61847,0.78483,282.43,-0.17399,0.77767,0.60412,325.87,-0.98396,-0.11282,-0.13815,349.87 |
| 8218 | | |
| 8219 | | > view matrix models |
| 8220 | | > #4,-0.039282,-0.61847,0.78483,283.43,-0.17399,0.77767,0.60412,316.45,-0.98396,-0.11282,-0.13815,352.4 |
| 8221 | | |
| 8222 | | > view matrix models |
| 8223 | | > #4,-0.039282,-0.61847,0.78483,280.48,-0.17399,0.77767,0.60412,321.91,-0.98396,-0.11282,-0.13815,349.33 |
| 8224 | | |
| 8225 | | > fitmap #4 inMap #1 |
| 8226 | | |
| 8227 | | Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 7501 |
| 8228 | | atoms |
| 8229 | | average map value = 0.007081, steps = 76 |
| 8230 | | shifted from previous position = 5.23 |
| 8231 | | rotated from previous position = 9.83 degrees |
| 8232 | | atoms outside contour = 4196, contour level = 0.007615 |
| 8233 | | |
| 8234 | | Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1) |
| 8235 | | coordinates: |
| 8236 | | Matrix rotation and translation |
| 8237 | | -0.01660204 -0.71696194 0.69691459 284.11343250 |
| 8238 | | -0.07144030 0.69607980 0.71440128 317.58202257 |
| 8239 | | -0.99730670 -0.03792727 -0.06277633 348.65007309 |
| 8240 | | Axis -0.38326875 0.86310970 0.32885668 |
| 8241 | | Axis point 335.00417014 0.00000000 -72.91250391 |
| 8242 | | Rotation angle (degrees) 101.04905018 |
| 8243 | | Shift along axis 279.87223028 |
| 8244 | | |
| 8245 | | |
| 8246 | | > fitmap #4 inMap #1 |
| 8247 | | |
| 8248 | | Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 7501 |
| 8249 | | atoms |
| 8250 | | average map value = 0.007082, steps = 48 |
| 8251 | | shifted from previous position = 0.0612 |
| 8252 | | rotated from previous position = 0.0384 degrees |
| 8253 | | atoms outside contour = 4200, contour level = 0.007615 |
| 8254 | | |
| 8255 | | Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1) |
| 8256 | | coordinates: |
| 8257 | | Matrix rotation and translation |
| 8258 | | -0.01692030 -0.71693318 0.69693652 284.05349358 |
| 8259 | | -0.07202636 0.69609938 0.71432336 317.59170809 |
| 8260 | | -0.99725920 -0.03811123 -0.06341630 348.64710676 |
| 8261 | | Axis -0.38335861 0.86317737 0.32857419 |
| 8262 | | Axis point 334.96570898 0.00000000 -72.72373614 |
| 8263 | | Rotation angle (degrees) 101.07644974 |
| 8264 | | Shift along axis 279.80006421 |
| 8265 | | |
| 8266 | | |
| 8267 | | > view matrix models |
| 8268 | | > #4,-0.01692,-0.71693,0.69694,284.45,-0.072026,0.6961,0.71432,329.79,-0.99726,-0.038111,-0.063416,351.11 |
| 8269 | | |
| 8270 | | > view matrix models |
| 8271 | | > #4,-0.01692,-0.71693,0.69694,284.34,-0.072026,0.6961,0.71432,325.54,-0.99726,-0.038111,-0.063416,349.71 |
| 8272 | | |
| 8273 | | > view matrix models |
| 8274 | | > #4,-0.01692,-0.71693,0.69694,284.37,-0.072026,0.6961,0.71432,329.68,-0.99726,-0.038111,-0.063416,352.5 |
| 8275 | | |
| 8276 | | > fitmap #4 inMap #1 |
| 8277 | | |
| 8278 | | Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 7501 |
| 8279 | | atoms |
| 8280 | | average map value = 0.007082, steps = 100 |
| 8281 | | shifted from previous position = 12.7 |
| 8282 | | rotated from previous position = 0.0636 degrees |
| 8283 | | atoms outside contour = 4200, contour level = 0.007615 |
| 8284 | | |
| 8285 | | Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1) |
| 8286 | | coordinates: |
| 8287 | | Matrix rotation and translation |
| 8288 | | -0.01691113 -0.71768668 0.69616079 284.06387498 |
| 8289 | | -0.07179888 0.69533455 0.71509075 317.57056123 |
| 8290 | | -0.99727576 -0.03789058 -0.06328799 348.63805779 |
| 8291 | | Axis -0.38366119 0.86284462 0.32909459 |
| 8292 | | Axis point 334.98821277 0.00000000 -72.89333153 |
| 8293 | | Rotation angle (degrees) 101.09476358 |
| 8294 | | Shift along axis 279.76466456 |
| 8295 | | |
| 8296 | | |
| 8297 | | > fitmap #4 inMap #1 |
| 8298 | | |
| 8299 | | Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 7501 |
| 8300 | | atoms |
| 8301 | | average map value = 0.007082, steps = 48 |
| 8302 | | shifted from previous position = 0.0664 |
| 8303 | | rotated from previous position = 0.0489 degrees |
| 8304 | | atoms outside contour = 4201, contour level = 0.007615 |
| 8305 | | |
| 8306 | | Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1) |
| 8307 | | coordinates: |
| 8308 | | Matrix rotation and translation |
| 8309 | | -0.01688880 -0.71709481 0.69677098 284.11645596 |
| 8310 | | -0.07170364 0.69594474 0.71450647 317.57357730 |
| 8311 | | -0.99728299 -0.03789386 -0.06317198 348.67352273 |
| 8312 | | Axis -0.38333652 0.86309472 0.32881698 |
| 8313 | | Axis point 334.99021187 0.00000000 -72.82036243 |
| 8314 | | Rotation angle (degrees) 101.07291229 |
| 8315 | | Shift along axis 279.83364008 |
| 8316 | | |
| 8317 | | |
| 8318 | | > fitmap #4 inMap #1 |
| 8319 | | |
| 8320 | | Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 7501 |
| 8321 | | atoms |
| 8322 | | average map value = 0.007082, steps = 60 |
| 8323 | | shifted from previous position = 0.0629 |
| 8324 | | rotated from previous position = 0.0223 degrees |
| 8325 | | atoms outside contour = 4198, contour level = 0.007615 |
| 8326 | | |
| 8327 | | Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1) |
| 8328 | | coordinates: |
| 8329 | | Matrix rotation and translation |
| 8330 | | -0.01680257 -0.71727840 0.69658407 284.06435287 |
| 8331 | | -0.07198223 0.69574245 0.71467545 317.58085384 |
| 8332 | | -0.99726437 -0.03813329 -0.06332156 348.64131381 |
| 8333 | | Axis -0.38355477 0.86301288 0.32877729 |
| 8334 | | Axis point 335.01079253 0.00000000 -72.81676274 |
| 8335 | | Rotation angle (degrees) 101.08066674 |
| 8336 | | Shift along axis 279.74747890 |
| 8337 | | |
| 8338 | | |
| 8339 | | > ui mousemode right "translate selected models" |
| 8340 | | |
| 8341 | | > select subtract #4 |
| 8342 | | |
| 8343 | | Nothing selected |
| 8344 | | |
| 8345 | | > select add #4 |
| 8346 | | |
| 8347 | | 7501 atoms, 7619 bonds, 953 residues, 1 model selected |
| 8348 | | |
| 8349 | | > show #!1 models |
| 8350 | | |
| 8351 | | > fitmap #5 inMap #1 |
| 8352 | | |
| 8353 | | Fit molecule bcop Q9JIF7 (#5) to map postprocess.mrc (#1) using 7501 atoms |
| 8354 | | average map value = 0.008654, steps = 64 |
| 8355 | | shifted from previous position = 0.23 |
| 8356 | | rotated from previous position = 0.455 degrees |
| 8357 | | atoms outside contour = 3206, contour level = 0.007615 |
| 8358 | | |
| 8359 | | Position of bcop Q9JIF7 (#5) relative to postprocess.mrc (#1) coordinates: |
| 8360 | | Matrix rotation and translation |
| 8361 | | 0.04829043 -0.74196257 0.66869990 284.94471830 |
| 8362 | | -0.15903620 0.65522873 0.73850036 314.23275652 |
| 8363 | | -0.98609102 -0.14200999 -0.08635763 347.42829540 |
| 8364 | | Axis -0.44854959 0.84298361 0.29695436 |
| 8365 | | Axis point 360.97684873 0.00000000 -73.52227939 |
| 8366 | | Rotation angle (degrees) 101.03562095 |
| 8367 | | Shift along axis 240.25157323 |
| 8368 | | |
| 8369 | | |
| 8370 | | > fitmap #5 inMap #1 |
| 8371 | | |
| 8372 | | Fit molecule bcop Q9JIF7 (#5) to map postprocess.mrc (#1) using 7501 atoms |
| 8373 | | average map value = 0.008654, steps = 48 |
| 8374 | | shifted from previous position = 0.00691 |
| 8375 | | rotated from previous position = 0.0175 degrees |
| 8376 | | atoms outside contour = 3205, contour level = 0.007615 |
| 8377 | | |
| 8378 | | Position of bcop Q9JIF7 (#5) relative to postprocess.mrc (#1) coordinates: |
| 8379 | | Matrix rotation and translation |
| 8380 | | 0.04856677 -0.74202042 0.66861569 284.94379926 |
| 8381 | | -0.15895151 0.65513306 0.73860346 314.23632504 |
| 8382 | | -0.98609110 -0.14214906 -0.08612757 347.43381820 |
| 8383 | | Axis -0.44865466 0.84290638 0.29701486 |
| 8384 | | Axis point 361.04538475 0.00000000 -73.60071018 |
| 8385 | | Rotation angle (degrees) 101.02363291 |
| 8386 | | Shift along axis 240.22344619 |
| 8387 | | |
| 8388 | | |
| 8389 | | > fitmap #5 inMap #1 |
| 8390 | | |
| 8391 | | Fit molecule bcop Q9JIF7 (#5) to map postprocess.mrc (#1) using 7501 atoms |
| 8392 | | average map value = 0.008653, steps = 60 |
| 8393 | | shifted from previous position = 0.0131 |
| 8394 | | rotated from previous position = 0.0259 degrees |
| 8395 | | atoms outside contour = 3204, contour level = 0.007615 |
| 8396 | | |
| 8397 | | Position of bcop Q9JIF7 (#5) relative to postprocess.mrc (#1) coordinates: |
| 8398 | | Matrix rotation and translation |
| 8399 | | 0.04830079 -0.74187618 0.66879500 284.95295438 |
| 8400 | | -0.15868386 0.65537318 0.73844797 314.24162957 |
| 8401 | | -0.98614727 -0.14179460 -0.08606873 347.42930560 |
| 8402 | | Axis -0.44839342 0.84302357 0.29707675 |
| 8403 | | Axis point 360.94600410 0.00000000 -73.58702601 |
| 8404 | | Rotation angle (degrees) 101.02267014 |
| 8405 | | Shift along axis 240.35523879 |
| 8406 | | |
| 8407 | | |
| 8408 | | > fitmap #5 inMap #1 |
| 8409 | | |
| 8410 | | Fit molecule bcop Q9JIF7 (#5) to map postprocess.mrc (#1) using 7501 atoms |
| 8411 | | average map value = 0.008654, steps = 48 |
| 8412 | | shifted from previous position = 0.0104 |
| 8413 | | rotated from previous position = 0.0215 degrees |
| 8414 | | atoms outside contour = 3203, contour level = 0.007615 |
| 8415 | | |
| 8416 | | Position of bcop Q9JIF7 (#5) relative to postprocess.mrc (#1) coordinates: |
| 8417 | | Matrix rotation and translation |
| 8418 | | 0.04855166 -0.74197520 0.66866697 284.94626243 |
| 8419 | | -0.15889800 0.65519312 0.73856169 314.23609417 |
| 8420 | | -0.98610047 -0.14210824 -0.08608766 347.43200387 |
| 8421 | | Axis -0.44860881 0.84293018 0.29701658 |
| 8422 | | Axis point 361.03389089 0.00000000 -73.60342354 |
| 8423 | | Rotation angle (degrees) 101.02115594 |
| 8424 | | Shift along axis 240.24274795 |
| 8425 | | |
| 8426 | | |
| 8427 | | > ui mousemode right "translate selected models" |
| 8428 | | |
| 8429 | | > view matrix models |
| 8430 | | > #4,-0.016803,-0.71728,0.69658,281.97,-0.071982,0.69574,0.71468,327.09,-0.99726,-0.038133,-0.063322,352.85 |
| 8431 | | |
| 8432 | | > view matrix models |
| 8433 | | > #4,-0.016803,-0.71728,0.69658,282.46,-0.071982,0.69574,0.71468,326.46,-0.99726,-0.038133,-0.063322,350.63 |
| 8434 | | |
| 8435 | | > view matrix models |
| 8436 | | > #4,-0.016803,-0.71728,0.69658,281.96,-0.071982,0.69574,0.71468,327.54,-0.99726,-0.038133,-0.063322,352.56 |
| 8437 | | |
| 8438 | | > view matrix models |
| 8439 | | > #4,-0.016803,-0.71728,0.69658,281.99,-0.071982,0.69574,0.71468,327.35,-0.99726,-0.038133,-0.063322,352.52 |
| 8440 | | |
| 8441 | | > ui mousemode right "rotate selected models" |
| 8442 | | |
| 8443 | | > view matrix models |
| 8444 | | > #4,0.15215,-0.74422,0.65037,281.51,-0.032738,0.65387,0.75589,327.03,-0.98782,-0.1363,0.075122,351.92 |
| 8445 | | |
| 8446 | | > fitmap #5 inMap #1 |
| 8447 | | |
| 8448 | | Fit molecule bcop Q9JIF7 (#5) to map postprocess.mrc (#1) using 7501 atoms |
| 8449 | | average map value = 0.008653, steps = 64 |
| 8450 | | shifted from previous position = 0.0477 |
| 8451 | | rotated from previous position = 0.0377 degrees |
| 8452 | | atoms outside contour = 3204, contour level = 0.007615 |
| 8453 | | |
| 8454 | | Position of bcop Q9JIF7 (#5) relative to postprocess.mrc (#1) coordinates: |
| 8455 | | Matrix rotation and translation |
| 8456 | | 0.04852805 -0.74175367 0.66891442 284.99078272 |
| 8457 | | -0.15835458 0.65551970 0.73838860 314.23634123 |
| 8458 | | -0.98618904 -0.14175822 -0.08564899 347.43060192 |
| 8459 | | Axis -0.44830940 0.84303938 0.29715871 |
| 8460 | | Axis point 360.98503593 0.00000000 -73.69172233 |
| 8461 | | Rotation angle (degrees) 100.99951138 |
| 8462 | | Shift along axis 240.39159212 |
| 8463 | | |
| 8464 | | |
| 8465 | | > fitmap #5 inMap #1 |
| 8466 | | |
| 8467 | | Fit molecule bcop Q9JIF7 (#5) to map postprocess.mrc (#1) using 7501 atoms |
| 8468 | | average map value = 0.008654, steps = 48 |
| 8469 | | shifted from previous position = 0.0556 |
| 8470 | | rotated from previous position = 0.0475 degrees |
| 8471 | | atoms outside contour = 3201, contour level = 0.007615 |
| 8472 | | |
| 8473 | | Position of bcop Q9JIF7 (#5) relative to postprocess.mrc (#1) coordinates: |
| 8474 | | Matrix rotation and translation |
| 8475 | | 0.04863342 -0.74201839 0.66861309 284.93974625 |
| 8476 | | -0.15904224 0.65511159 0.73860297 314.22958632 |
| 8477 | | -0.98607319 -0.14225851 -0.08615195 347.43227410 |
| 8478 | | Axis -0.44870924 0.84289419 0.29696700 |
| 8479 | | Axis point 361.06707546 0.00000000 -73.59260335 |
| 8480 | | Rotation angle (degrees) 101.02302588 |
| 8481 | | Shift along axis 240.18311442 |
| 8482 | | |
| 8483 | | |
| 8484 | | > fitmap #4 inMap #1 |
| 8485 | | |
| 8486 | | Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 7501 |
| 8487 | | atoms |
| 8488 | | average map value = 0.006862, steps = 88 |
| 8489 | | shifted from previous position = 6.32 |
| 8490 | | rotated from previous position = 12.5 degrees |
| 8491 | | atoms outside contour = 4265, contour level = 0.007615 |
| 8492 | | |
| 8493 | | Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1) |
| 8494 | | coordinates: |
| 8495 | | Matrix rotation and translation |
| 8496 | | -0.02375568 -0.71180544 0.70197485 283.50658347 |
| 8497 | | 0.07563230 0.69888106 0.71122782 323.06929077 |
| 8498 | | -0.99685276 0.06998767 0.03723309 346.61881962 |
| 8499 | | Axis -0.32398834 0.85833729 0.39785507 |
| 8500 | | Axis point 312.57973963 0.00000000 -97.24580641 |
| 8501 | | Rotation angle (degrees) 98.26899806 |
| 8502 | | Shift along axis 323.35364799 |
| 8503 | | |
| 8504 | | |
| 8505 | | > fitmap #4 inMap #1 |
| 8506 | | |
| 8507 | | Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 7501 |
| 8508 | | atoms |
| 8509 | | average map value = 0.006862, steps = 44 |
| 8510 | | shifted from previous position = 0.00175 |
| 8511 | | rotated from previous position = 0.00181 degrees |
| 8512 | | atoms outside contour = 4266, contour level = 0.007615 |
| 8513 | | |
| 8514 | | Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1) |
| 8515 | | coordinates: |
| 8516 | | Matrix rotation and translation |
| 8517 | | -0.02377180 -0.71182364 0.70195584 283.50748601 |
| 8518 | | 0.07562490 0.69886199 0.71124735 323.07085740 |
| 8519 | | -0.99685293 0.06999297 0.03721839 346.61918331 |
| 8520 | | Axis -0.32399671 0.85833092 0.39786199 |
| 8521 | | Axis point 312.57975706 0.00000000 -97.24599552 |
| 8522 | | Rotation angle (degrees) 98.27044239 |
| 8523 | | Shift along axis 323.35280925 |
| 8524 | | |
| 8525 | | |
| 8526 | | > hide #!1 models |
| 8527 | | |
| 8528 | | > select subtract #4 |
| 8529 | | |
| 8530 | | Nothing selected |
| 8531 | | |
| 8532 | | > select add #4 |
| 8533 | | |
| 8534 | | 7501 atoms, 7619 bonds, 953 residues, 1 model selected |
| 8535 | | |
| 8536 | | > view matrix models |
| 8537 | | > #4,0.037432,-0.68363,0.72887,282.99,-0.02112,0.72867,0.68453,323.62,-0.99908,-0.041017,0.012837,347.04 |
| 8538 | | |
| 8539 | | > view matrix models |
| 8540 | | > #4,-0.013914,-0.70418,0.70988,283.4,-0.03586,0.70985,0.70344,323.63,-0.99926,-0.015669,-0.035129,347.26 |
| 8541 | | |
| 8542 | | > view matrix models |
| 8543 | | > #4,-0.010473,-0.70137,0.71272,283.36,0.10431,0.7081,0.69836,322.98,-0.99449,0.08166,0.065747,346.41 |
| 8544 | | |
| 8545 | | > ui mousemode right "translate selected models" |
| 8546 | | |
| 8547 | | > view matrix models |
| 8548 | | > #4,-0.010473,-0.70137,0.71272,286.39,0.10431,0.7081,0.69836,317.88,-0.99449,0.08166,0.065747,343.25 |
| 8549 | | |
| 8550 | | > view matrix models |
| 8551 | | > #4,-0.010473,-0.70137,0.71272,285.35,0.10431,0.7081,0.69836,327.55,-0.99449,0.08166,0.065747,343.29 |
| 8552 | | |
| 8553 | | > ui mousemode right "rotate selected models" |
| 8554 | | |
| 8555 | | > view matrix models |
| 8556 | | > #4,0.10478,-0.55074,0.82807,283.76,-0.14287,0.81568,0.56058,329.27,-0.98418,-0.17704,0.0067812,344.22 |
| 8557 | | |
| 8558 | | > fitmap #4 inMap #1 |
| 8559 | | |
| 8560 | | Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 7501 |
| 8561 | | atoms |
| 8562 | | average map value = 0.006862, steps = 80 |
| 8563 | | shifted from previous position = 6.78 |
| 8564 | | rotated from previous position = 18.4 degrees |
| 8565 | | atoms outside contour = 4263, contour level = 0.007615 |
| 8566 | | |
| 8567 | | Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1) |
| 8568 | | coordinates: |
| 8569 | | Matrix rotation and translation |
| 8570 | | -0.02384645 -0.71201247 0.70176177 283.52234822 |
| 8571 | | 0.07529000 0.69868878 0.71145302 323.10748618 |
| 8572 | | -0.99687650 0.06980127 0.03694617 346.63245742 |
| 8573 | | Axis -0.32420988 0.85827759 0.39780339 |
| 8574 | | Axis point 312.64515312 0.00000000 -97.23309937 |
| 8575 | | Rotation angle (degrees) 98.28549839 |
| 8576 | | Shift along axis 323.28673342 |
| 8577 | | |
| 8578 | | |
| 8579 | | > fitmap #4 inMap #1 |
| 8580 | | |
| 8581 | | Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 7501 |
| 8582 | | atoms |
| 8583 | | average map value = 0.006863, steps = 60 |
| 8584 | | shifted from previous position = 0.0417 |
| 8585 | | rotated from previous position = 0.0158 degrees |
| 8586 | | atoms outside contour = 4262, contour level = 0.007615 |
| 8587 | | |
| 8588 | | Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1) |
| 8589 | | coordinates: |
| 8590 | | Matrix rotation and translation |
| 8591 | | -0.02361562 -0.71191785 0.70186556 283.49898678 |
| 8592 | | 0.07534867 0.69879696 0.71134055 323.07473827 |
| 8593 | | -0.99687756 0.06968338 0.03713954 346.61902368 |
| 8594 | | Axis -0.32419993 0.85829698 0.39776966 |
| 8595 | | Axis point 312.65585505 0.00000000 -97.25491070 |
| 8596 | | Rotation angle (degrees) 98.27008644 |
| 8597 | | Shift along axis 323.25824990 |
| 8598 | | |
| 8599 | | |
| 8600 | | > fitmap #4 inMap #1 |
| 8601 | | |
| 8602 | | Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 7501 |
| 8603 | | atoms |
| 8604 | | average map value = 0.006862, steps = 44 |
| 8605 | | shifted from previous position = 0.0162 |
| 8606 | | rotated from previous position = 0.0265 degrees |
| 8607 | | atoms outside contour = 4265, contour level = 0.007615 |
| 8608 | | |
| 8609 | | Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1) |
| 8610 | | coordinates: |
| 8611 | | Matrix rotation and translation |
| 8612 | | -0.02351289 -0.71164250 0.70214820 283.50337203 |
| 8613 | | 0.07557556 0.69906733 0.71105077 323.05904795 |
| 8614 | | -0.99686282 0.06978411 0.03734569 346.61866410 |
| 8615 | | Axis -0.32398886 0.85839585 0.39772827 |
| 8616 | | Axis point 312.62223016 0.00000000 -97.24838705 |
| 8617 | | Rotation angle (degrees) 98.25331819 |
| 8618 | | Shift along axis 323.32065465 |
| 8619 | | |
| 8620 | | |
| 8621 | | > ui mousemode right "rotate selected models" |
| 8622 | | |
| 8623 | | > select subtract #4 |
| 8624 | | |
| 8625 | | Nothing selected |
| 8626 | | |
| 8627 | | > hide #4 models |
| 8628 | | |
| 8629 | | > hide #5 models |
| 8630 | | |
| 8631 | | > show #5 models |
| 8632 | | |
| 8633 | | > show #4 models |
| 8634 | | |
| 8635 | | > hide #5 models |
| 8636 | | |
| 8637 | | > ui mousemode right select |
| 8638 | | |
| 8639 | | Drag select of 5 residues |
| 8640 | | Drag select of 274 residues |
| 8641 | | |
| 8642 | | > fitmap sel inMap #1 |
| 8643 | | |
| 8644 | | Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 2115 |
| 8645 | | atoms |
| 8646 | | average map value = 0.008315, steps = 68 |
| 8647 | | shifted from previous position = 2.03 |
| 8648 | | rotated from previous position = 4.73 degrees |
| 8649 | | atoms outside contour = 923, contour level = 0.007615 |
| 8650 | | |
| 8651 | | Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1) |
| 8652 | | coordinates: |
| 8653 | | Matrix rotation and translation |
| 8654 | | -0.10579048 -0.70730759 0.69894516 282.96553278 |
| 8655 | | 0.07896248 0.69469453 0.71495765 324.74299380 |
| 8656 | | -0.99124835 0.13082616 -0.01764130 345.12798806 |
| 8657 | | Axis -0.29901705 0.86521045 0.40249183 |
| 8658 | | Axis point 295.29571959 0.00000000 -81.09648469 |
| 8659 | | Rotation angle (degrees) 102.37848859 |
| 8660 | | Shift along axis 335.27071250 |
| 8661 | | |
| 8662 | | |
| 8663 | | > fitmap sel inMap #1 |
| 8664 | | |
| 8665 | | Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 2115 |
| 8666 | | atoms |
| 8667 | | average map value = 0.008315, steps = 40 |
| 8668 | | shifted from previous position = 0.00564 |
| 8669 | | rotated from previous position = 0.0106 degrees |
| 8670 | | atoms outside contour = 921, contour level = 0.007615 |
| 8671 | | |
| 8672 | | Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1) |
| 8673 | | coordinates: |
| 8674 | | Matrix rotation and translation |
| 8675 | | -0.10571287 -0.70737352 0.69889019 282.97073069 |
| 8676 | | 0.07909744 0.69461975 0.71501538 324.74730754 |
| 8677 | | -0.99124587 0.13086675 -0.01747882 345.12460712 |
| 8678 | | Axis -0.29902027 0.86516498 0.40258719 |
| 8679 | | Axis point 295.29640717 0.00000000 -81.15126842 |
| 8680 | | Rotation angle (degrees) 102.37364024 |
| 8681 | | Shift along axis 335.28875858 |
| 8682 | | |
| 8683 | | |
| 8684 | | > fitmap sel inMap #1 |
| 8685 | | |
| 8686 | | Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 2115 |
| 8687 | | atoms |
| 8688 | | average map value = 0.008316, steps = 40 |
| 8689 | | shifted from previous position = 0.0453 |
| 8690 | | rotated from previous position = 0.0245 degrees |
| 8691 | | atoms outside contour = 923, contour level = 0.007615 |
| 8692 | | |
| 8693 | | Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1) |
| 8694 | | coordinates: |
| 8695 | | Matrix rotation and translation |
| 8696 | | -0.10592320 -0.70735006 0.69888209 282.93834319 |
| 8697 | | 0.07872769 0.69466415 0.71501305 324.71829023 |
| 8698 | | -0.99125286 0.13075784 -0.01789301 345.13557589 |
| 8699 | | Axis -0.29909432 0.86522081 0.40241214 |
| 8700 | | Axis point 295.29572978 0.00000000 -81.02182809 |
| 8701 | | Rotation angle (degrees) 102.39065520 |
| 8702 | | Shift along axis 335.21451712 |
| 8703 | | |
| 8704 | | |
| 8705 | | > fitmap sel inMap #1 |
| 8706 | | |
| 8707 | | Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 2115 |
| 8708 | | atoms |
| 8709 | | average map value = 0.008315, steps = 44 |
| 8710 | | shifted from previous position = 0.0476 |
| 8711 | | rotated from previous position = 0.0219 degrees |
| 8712 | | atoms outside contour = 920, contour level = 0.007615 |
| 8713 | | |
| 8714 | | Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1) |
| 8715 | | coordinates: |
| 8716 | | Matrix rotation and translation |
| 8717 | | -0.10568605 -0.70734140 0.69892675 282.97127380 |
| 8718 | | 0.07902633 0.69466562 0.71497868 324.74852806 |
| 8719 | | -0.99125441 0.13079689 -0.01751787 345.12632225 |
| 8720 | | Axis -0.29903611 0.86518479 0.40253283 |
| 8721 | | Axis point 295.31018308 0.00000000 -81.13842742 |
| 8722 | | Rotation angle (degrees) 102.37265369 |
| 8723 | | Shift along axis 335.27353174 |
| 8724 | | |
| 8725 | | |
| 8726 | | > show #!1 models |
| 8727 | | |
| 8728 | | > hide #!1 models |
| 8729 | | |
| 8730 | | > show #5 models |
| 8731 | | |
| 8732 | | > hide #5 models |
| 8733 | | |
| 8734 | | > show #5 models |
| 8735 | | |
| 8736 | | > select add #4 |
| 8737 | | |
| 8738 | | 7501 atoms, 7619 bonds, 953 residues, 1 model selected |
| 8739 | | |
| 8740 | | > select subtract #4 |
| 8741 | | |
| 8742 | | Nothing selected |
| 8743 | | |
| 8744 | | > hide #5 models |
| 8745 | | |
| 8746 | | Drag select of 507 residues |
| 8747 | | |
| 8748 | | > fitmap sel inMap #1 |
| 8749 | | |
| 8750 | | Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 4000 |
| 8751 | | atoms |
| 8752 | | average map value = 0.008277, steps = 72 |
| 8753 | | shifted from previous position = 7.64 |
| 8754 | | rotated from previous position = 16 degrees |
| 8755 | | atoms outside contour = 1925, contour level = 0.007615 |
| 8756 | | |
| 8757 | | Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1) |
| 8758 | | coordinates: |
| 8759 | | Matrix rotation and translation |
| 8760 | | 0.04641244 -0.73475835 0.67673928 284.67198897 |
| 8761 | | -0.15304210 0.66424091 0.73168445 314.76006697 |
| 8762 | | -0.98712917 -0.13752886 -0.08161992 347.30373745 |
| 8763 | | Axis -0.44228138 0.84662536 0.29599439 |
| 8764 | | Axis point 359.30312780 0.00000000 -73.42097611 |
| 8765 | | Rotation angle (degrees) 100.68931043 |
| 8766 | | Shift along axis 243.37869526 |
| 8767 | | |
| 8768 | | |
| 8769 | | > fitmap sel inMap #1 |
| 8770 | | |
| 8771 | | Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 4000 |
| 8772 | | atoms |
| 8773 | | average map value = 0.008278, steps = 44 |
| 8774 | | shifted from previous position = 0.0309 |
| 8775 | | rotated from previous position = 0.0374 degrees |
| 8776 | | atoms outside contour = 1923, contour level = 0.007615 |
| 8777 | | |
| 8778 | | Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1) |
| 8779 | | coordinates: |
| 8780 | | Matrix rotation and translation |
| 8781 | | 0.04632868 -0.73495241 0.67653426 284.65184512 |
| 8782 | | -0.15360392 0.66396531 0.73181685 314.77209918 |
| 8783 | | -0.98704584 -0.13782242 -0.08213094 347.29830464 |
| 8784 | | Axis -0.44253516 0.84654949 0.29583203 |
| 8785 | | Axis point 359.33832379 0.00000000 -73.32232922 |
| 8786 | | Rotation angle (degrees) 100.71468633 |
| 8787 | | Shift along axis 243.24367199 |
| 8788 | | |
| 8789 | | |
| 8790 | | > fitmap sel inMap #1 |
| 8791 | | |
| 8792 | | Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 4000 |
| 8793 | | atoms |
| 8794 | | average map value = 0.008278, steps = 44 |
| 8795 | | shifted from previous position = 0.011 |
| 8796 | | rotated from previous position = 0.0194 degrees |
| 8797 | | atoms outside contour = 1925, contour level = 0.007615 |
| 8798 | | |
| 8799 | | Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1) |
| 8800 | | coordinates: |
| 8801 | | Matrix rotation and translation |
| 8802 | | 0.04646218 -0.73509123 0.67637427 284.66420229 |
| 8803 | | -0.15336806 0.66382787 0.73199098 314.77262106 |
| 8804 | | -0.98707624 -0.13774410 -0.08189663 347.29963762 |
| 8805 | | Axis -0.44257410 0.84646478 0.29601613 |
| 8806 | | Axis point 359.36528756 0.00000000 -73.41896329 |
| 8807 | | Rotation angle (degrees) 100.70796949 |
| 8808 | | Shift along axis 243.26522574 |
| 8809 | | |
| 8810 | | |
| 8811 | | > fitmap sel inMap #1 |
| 8812 | | |
| 8813 | | Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 4000 |
| 8814 | | atoms |
| 8815 | | average map value = 0.008277, steps = 44 |
| 8816 | | shifted from previous position = 0.0424 |
| 8817 | | rotated from previous position = 0.0391 degrees |
| 8818 | | atoms outside contour = 1921, contour level = 0.007615 |
| 8819 | | |
| 8820 | | Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1) |
| 8821 | | coordinates: |
| 8822 | | Matrix rotation and translation |
| 8823 | | 0.04628338 -0.73469053 0.67682175 284.68851949 |
| 8824 | | -0.15313190 0.66432115 0.73159280 314.80954549 |
| 8825 | | -0.98712130 -0.13750359 -0.08175753 347.32087173 |
| 8826 | | Axis -0.44222981 0.84667848 0.29591949 |
| 8827 | | Axis point 359.29889691 0.00000000 -73.38479054 |
| 8828 | | Rotation angle (degrees) 100.69474521 |
| 8829 | | Shift along axis 243.42373270 |
| 8830 | | |
| 8831 | | |
| 8832 | | > fitmap sel inMap #1 |
| 8833 | | |
| 8834 | | Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 4000 |
| 8835 | | atoms |
| 8836 | | average map value = 0.008277, steps = 44 |
| 8837 | | shifted from previous position = 0.0115 |
| 8838 | | rotated from previous position = 0.0203 degrees |
| 8839 | | atoms outside contour = 1921, contour level = 0.007615 |
| 8840 | | |
| 8841 | | Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1) |
| 8842 | | coordinates: |
| 8843 | | Matrix rotation and translation |
| 8844 | | 0.04618245 -0.73461065 0.67691533 284.69347280 |
| 8845 | | -0.15282529 0.66446533 0.73152598 314.80719942 |
| 8846 | | -0.98717355 -0.13723344 -0.08158045 347.32596892 |
| 8847 | | Axis -0.44204899 0.84673477 0.29602859 |
| 8848 | | Axis point 359.24246153 0.00000000 -73.41107435 |
| 8849 | | Rotation angle (degrees) 100.68832229 |
| 8850 | | Shift along axis 243.52815631 |
| 8851 | | |
| 8852 | | |
| 8853 | | > select add #4 |
| 8854 | | |
| 8855 | | 7501 atoms, 7619 bonds, 953 residues, 1 model selected |
| 8856 | | |
| 8857 | | > select subtract #4 |
| 8858 | | |
| 8859 | | Nothing selected |
| 8860 | | |
| 8861 | | > show #5 models |
| 8862 | | |
| 8863 | | > hide #5 models |
| 8864 | | |
| 8865 | | > show #5 models |
| 8866 | | |
| 8867 | | > hide #5 models |
| 8868 | | |
| 8869 | | > show #5 models |
| 8870 | | |
| 8871 | | > hide #5 models |
| 8872 | | |
| 8873 | | > show #5 models |
| 8874 | | |
| 8875 | | > hide #4 models |
| 8876 | | |
| 8877 | | > show #4 models |
| 8878 | | |
| 8879 | | > hide #4 models |
| 8880 | | |
| 8881 | | > show #4 models |
| 8882 | | |
| 8883 | | > hide #4 models |
| 8884 | | |
| 8885 | | > show #4 models |
| 8886 | | |
| 8887 | | > hide #4 models |
| 8888 | | |
| 8889 | | > hide #5 models |
| 8890 | | |
| 8891 | | > save /fs/gpfs41/lv09/fileset01/pool/pool- |
| 8892 | | > briggs/taylor/em_data/20220715_COPI_Golph/alignments/alphafold_copi_colored_RT_2.cxs |
| 8893 | | |
| 8894 | | ——— End of log from Tue Nov 7 08:56:24 2023 ——— |
| 8895 | | |
| 8896 | | opened ChimeraX session |
| 8897 | | |
| 8898 | | > show #13 models |
| 8899 | | |
| 8900 | | > show #3 models |
| 8901 | | |
| 8902 | | > select add #3 |
| 8903 | | |
| 8904 | | 9810 atoms, 10032 bonds, 1233 residues, 1 model selected |
| 8905 | | |
| 8906 | | > show sel atoms |
| 8907 | | |
| 8908 | | > select subtract #3 |
| 8909 | | |
| 8910 | | Nothing selected |
| 8911 | | |
| 8912 | | > hide #13 models |
| 8913 | | |
| 8914 | | > show #13 models |
| 8915 | | |
| 8916 | | > show #!1 models |
| 8917 | | |
| 8918 | | > ui tool show "Side View" |
| 8919 | | |
| 8920 | | > hide #!1 models |
| 8921 | | |
| 8922 | | > show #!1 models |
| 8923 | | |
| 8924 | | > hide #3 models |
| 8925 | | |
| 8926 | | > show #11 models |
| 8927 | | |
| 8928 | | > select add #11 |
| 8929 | | |
| 8930 | | 1420 atoms, 1441 bonds, 177 residues, 1 model selected |
| 8931 | | |
| 8932 | | > select add #13 |
| 8933 | | |
| 8934 | | 3787 atoms, 3839 bonds, 475 residues, 2 models selected |
| 8935 | | |
| 8936 | | > view |
| 8937 | | |
| 8938 | | > hide #!1 models |
| 8939 | | |
| 8940 | | > view orient |
| 8941 | | |
| 8942 | | > select subtract #11 |
| 8943 | | |
| 8944 | | 2367 atoms, 2398 bonds, 298 residues, 1 model selected |
| 8945 | | |
| 8946 | | > select subtract #13 |
| 8947 | | |
| 8948 | | Nothing selected |
| 8949 | | |
| 8950 | | > show #!1 models |
| 8951 | | |
| 8952 | | > hide #11 models |
| 8953 | | |
| 8954 | | > show #10 models |
| 8955 | | |
| 8956 | | > show #11 models |
| 8957 | | |
| 8958 | | > show #!2 models |
| 8959 | | |
| 8960 | | > hide #!2 models |
| 8961 | | |
| 8962 | | > hide #!1 models |
| 8963 | | |
| 8964 | | > show #!1 models |
| 8965 | | |
| 8966 | | > hide #!1 models |
| 8967 | | |
| 8968 | | > show #!1 models |
| 8969 | | |
| 8970 | | > show #!2 models |
| 8971 | | |
| 8972 | | > hide #!2 models |
| 8973 | | |
| 8974 | | > hide #!1 models |
| 8975 | | |
| 8976 | | > show #!1 models |
| 8977 | | |
| 8978 | | > hide #!1 models |
| 8979 | | |
| 8980 | | > show #!1 models |
| 8981 | | |
| 8982 | | > hide #11 models |
| 8983 | | |
| 8984 | | > hide #10 models |
| 8985 | | |
| 8986 | | > show #14 models |
| 8987 | | |
| 8988 | | > select add #13 |
| 8989 | | |
| 8990 | | 2367 atoms, 2398 bonds, 298 residues, 1 model selected |
| 8991 | | |
| 8992 | | > select add #14 |
| 8993 | | |
| 8994 | | 9581 atoms, 9771 bonds, 1203 residues, 2 models selected |
| 8995 | | |
| 8996 | | > hide #!1 models |
| 8997 | | |
| 8998 | | > view orient |
| 8999 | | |
| 9000 | | > select subtract #13 |
| 9001 | | |
| 9002 | | 7214 atoms, 7373 bonds, 905 residues, 1 model selected |
| 9003 | | |
| 9004 | | > select subtract #14 |
| 9005 | | |
| 9006 | | Nothing selected |
| 9007 | | |
| 9008 | | > show #!1 models |
| 9009 | | |
| 9010 | | > hide #!1 models |
| 9011 | | |
| 9012 | | > hide #13 models |
| 9013 | | |
| 9014 | | > show #4 models |
| 9015 | | |
| 9016 | | > hide #14 models |
| 9017 | | |
| 9018 | | > select add #4 |
| 9019 | | |
| 9020 | | 7501 atoms, 7619 bonds, 953 residues, 1 model selected |
| 9021 | | |
| 9022 | | > view orient |
| 9023 | | |
| 9024 | | > show #!1 models |
| 9025 | | |
| 9026 | | > show #!2 models |
| 9027 | | |
| 9028 | | > select subtract #4 |
| 9029 | | |
| 9030 | | Nothing selected |
| 9031 | | |
| 9032 | | > hide #!1 models |
| 9033 | | |
| 9034 | | > hide #!2 models |
| 9035 | | |
| 9036 | | > ui mousemode right select |
| 9037 | | |
| 9038 | | Drag select of 136 residues |
| 9039 | | |
| 9040 | | > select add #4 |
| 9041 | | |
| 9042 | | 7501 atoms, 7619 bonds, 953 residues, 1 model selected |
| 9043 | | |
| 9044 | | > select subtract #4 |
| 9045 | | |
| 9046 | | Nothing selected |
| 9047 | | |
| 9048 | | > ui mousemode right select |
| 9049 | | |
| 9050 | | Drag select of 383 residues |
| 9051 | | |
| 9052 | | > select #4/A:608 |
| 9053 | | |
| 9054 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 9055 | | Drag select of 383 residues |
| 9056 | | |
| 9057 | | > select up |
| 9058 | | |
| 9059 | | 3380 atoms, 3422 bonds, 427 residues, 1 model selected |
| 9060 | | |
| 9061 | | > select down |
| 9062 | | |
| 9063 | | 3033 atoms, 383 residues, 1 model selected |
| 9064 | | |
| 9065 | | > select up |
| 9066 | | |
| 9067 | | 3380 atoms, 3422 bonds, 427 residues, 1 model selected |
| 9068 | | |
| 9069 | | > show #!1 models |
| 9070 | | |
| 9071 | | > ui mousemode right "rotate selected models" |
| 9072 | | |
| 9073 | | > view matrix models |
| 9074 | | > #4,0.12931,-0.68543,0.71656,283.94,-0.23247,0.68153,0.69388,315.37,-0.96397,-0.2563,-0.071212,347.45 |
| 9075 | | |
| 9076 | | > ui tool show "Fit in Map" |
| 9077 | | |
| 9078 | | > fitmap #4 inMap #1 |
| 9079 | | |
| 9080 | | Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 7501 |
| 9081 | | atoms |
| 9082 | | average map value = 0.007082, steps = 84 |
| 9083 | | shifted from previous position = 3.21 |
| 9084 | | rotated from previous position = 12.7 degrees |
| 9085 | | atoms outside contour = 4196, contour level = 0.007615 |
| 9086 | | |
| 9087 | | Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1) |
| 9088 | | coordinates: |
| 9089 | | Matrix rotation and translation |
| 9090 | | -0.01686710 -0.71703128 0.69683688 284.06166900 |
| 9091 | | -0.07196391 0.69599912 0.71442734 317.58765092 |
| 9092 | | -0.99726461 -0.03809679 -0.06333986 348.64581860 |
| 9093 | | Axis -0.38340310 0.86312684 0.32865502 |
| 9094 | | Axis point 334.98003117 0.00000000 -72.76424387 |
| 9095 | | Rotation angle (degrees) 101.07559198 |
| 9096 | | Shift along axis 279.79249866 |
| 9097 | | |
| 9098 | | |
| 9099 | | > fitmap sel inMap #1 |
| 9100 | | |
| 9101 | | Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 3380 |
| 9102 | | atoms |
| 9103 | | average map value = 0.008192, steps = 76 |
| 9104 | | shifted from previous position = 0.897 |
| 9105 | | rotated from previous position = 6.5 degrees |
| 9106 | | atoms outside contour = 1610, contour level = 0.007615 |
| 9107 | | |
| 9108 | | Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1) |
| 9109 | | coordinates: |
| 9110 | | Matrix rotation and translation |
| 9111 | | 0.04832578 -0.75310177 0.65612677 284.99448632 |
| 9112 | | -0.14577385 0.64454303 0.75054265 314.37538401 |
| 9113 | | -0.98813693 -0.13191669 -0.07863450 347.54799047 |
| 9114 | | Axis -0.44967374 0.83786547 0.30947535 |
| 9115 | | Axis point 360.57332885 0.00000000 -77.77491042 |
| 9116 | | Rotation angle (degrees) 101.12107188 |
| 9117 | | Shift along axis 242.80727879 |
| 9118 | | |
| 9119 | | |
| 9120 | | > fitmap sel inMap #1 |
| 9121 | | |
| 9122 | | Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 3380 |
| 9123 | | atoms |
| 9124 | | average map value = 0.008192, steps = 48 |
| 9125 | | shifted from previous position = 0.0193 |
| 9126 | | rotated from previous position = 0.0344 degrees |
| 9127 | | atoms outside contour = 1611, contour level = 0.007615 |
| 9128 | | |
| 9129 | | Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1) |
| 9130 | | coordinates: |
| 9131 | | Matrix rotation and translation |
| 9132 | | 0.04835907 -0.75283920 0.65642558 285.00381271 |
| 9133 | | -0.14534849 0.64489493 0.75032283 314.40058169 |
| 9134 | | -0.98819796 -0.13169538 -0.07823752 347.55577869 |
| 9135 | | Axis -0.44941378 0.83798324 0.30953408 |
| 9136 | | Axis point 360.53354608 0.00000000 -77.83680326 |
| 9137 | | Rotation angle (degrees) 101.09823628 |
| 9138 | | Shift along axis 242.95813649 |
| 9139 | | |
| 9140 | | |
| 9141 | | > fitmap sel inMap #1 |
| 9142 | | |
| 9143 | | Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 3380 |
| 9144 | | atoms |
| 9145 | | average map value = 0.008192, steps = 44 |
| 9146 | | shifted from previous position = 0.0441 |
| 9147 | | rotated from previous position = 0.0661 degrees |
| 9148 | | atoms outside contour = 1614, contour level = 0.007615 |
| 9149 | | |
| 9150 | | Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1) |
| 9151 | | coordinates: |
| 9152 | | Matrix rotation and translation |
| 9153 | | 0.04819420 -0.75355540 0.65561542 284.97654024 |
| 9154 | | -0.14565957 0.64405910 0.75098014 314.36156413 |
| 9155 | | -0.98816021 -0.13168955 -0.07872264 347.53382883 |
| 9156 | | Axis -0.44981266 0.83767585 0.30978660 |
| 9157 | | Axis point 360.54300294 0.00000000 -77.83205172 |
| 9158 | | Rotation angle (degrees) 101.14161651 |
| 9159 | | Shift along axis 242.80835826 |
| 9160 | | |
| 9161 | | |
| 9162 | | > view matrix models |
| 9163 | | > #4,0.14326,-0.70641,0.69315,284.18,-0.20842,0.66313,0.7189,314.8,-0.96749,-0.24746,-0.052234,347.57 |
| 9164 | | |
| 9165 | | > fitmap sel inMap #1 |
| 9166 | | |
| 9167 | | Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 3380 |
| 9168 | | atoms |
| 9169 | | average map value = 0.008192, steps = 72 |
| 9170 | | shifted from previous position = 2.9 |
| 9171 | | rotated from previous position = 7.29 degrees |
| 9172 | | atoms outside contour = 1611, contour level = 0.007615 |
| 9173 | | |
| 9174 | | Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1) |
| 9175 | | coordinates: |
| 9176 | | Matrix rotation and translation |
| 9177 | | 0.04831351 -0.75332636 0.65586980 284.96451865 |
| 9178 | | -0.14584994 0.64427774 0.75075561 314.38729611 |
| 9179 | | -0.98812631 -0.13193021 -0.07874528 347.53736280 |
| 9180 | | Axis -0.44980665 0.83776171 0.30956307 |
| 9181 | | Axis point 360.57386656 0.00000000 -77.78776602 |
| 9182 | | Rotation angle (degrees) 101.13241001 |
| 9183 | | Shift along axis 242.78743656 |
| 9184 | | |
| 9185 | | |
| 9186 | | > fitmap sel inMap #1 |
| 9187 | | |
| 9188 | | Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 3380 |
| 9189 | | atoms |
| 9190 | | average map value = 0.008192, steps = 48 |
| 9191 | | shifted from previous position = 0.0166 |
| 9192 | | rotated from previous position = 0.012 degrees |
| 9193 | | atoms outside contour = 1612, contour level = 0.007615 |
| 9194 | | |
| 9195 | | Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1) |
| 9196 | | coordinates: |
| 9197 | | Matrix rotation and translation |
| 9198 | | 0.04835771 -0.75341224 0.65576789 284.96244308 |
| 9199 | | -0.14599671 0.64415306 0.75083406 314.36720535 |
| 9200 | | -0.98810247 -0.13204857 -0.07884594 347.53130144 |
| 9201 | | Axis -0.44991512 0.83771285 0.30953767 |
| 9202 | | Axis point 360.59905243 0.00000000 -77.77460156 |
| 9203 | | Rotation angle (degrees) 101.13769886 |
| 9204 | | Shift along axis 242.71456482 |
| 9205 | | |
| 9206 | | |
| 9207 | | > fitmap #4 inMap #1 |
| 9208 | | |
| 9209 | | Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 7501 |
| 9210 | | atoms |
| 9211 | | average map value = 0.007082, steps = 76 |
| 9212 | | shifted from previous position = 3.8 |
| 9213 | | rotated from previous position = 6.54 degrees |
| 9214 | | atoms outside contour = 4198, contour level = 0.007615 |
| 9215 | | |
| 9216 | | Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1) |
| 9217 | | coordinates: |
| 9218 | | Matrix rotation and translation |
| 9219 | | -0.01696456 -0.71697328 0.69689419 284.10696210 |
| 9220 | | -0.07179855 0.69606869 0.71437619 317.57979658 |
| 9221 | | -0.99727487 -0.03791691 -0.06328615 348.65955561 |
| 9222 | | Axis -0.38328441 0.86315904 0.32870887 |
| 9223 | | Axis point 334.96615091 0.00000000 -72.77270692 |
| 9224 | | Rotation angle (degrees) 101.07483838 |
| 9225 | | Shift along axis 279.83559197 |
| 9226 | | |
| 9227 | | |
| 9228 | | > fitmap #4 inMap #1 |
| 9229 | | |
| 9230 | | Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 7501 |
| 9231 | | atoms |
| 9232 | | average map value = 0.007082, steps = 60 |
| 9233 | | shifted from previous position = 0.0455 |
| 9234 | | rotated from previous position = 0.023 degrees |
| 9235 | | atoms outside contour = 4198, contour level = 0.007615 |
| 9236 | | |
| 9237 | | Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1) |
| 9238 | | coordinates: |
| 9239 | | Matrix rotation and translation |
| 9240 | | -0.01683813 -0.71721297 0.69665058 284.06623356 |
| 9241 | | -0.07197130 0.69581138 0.71460944 317.58211952 |
| 9242 | | -0.99726456 -0.03810615 -0.06333491 348.64231772 |
| 9243 | | Axis -0.38350654 0.86304514 0.32874887 |
| 9244 | | Axis point 334.99916050 0.00000000 -72.80113275 |
| 9245 | | Rotation angle (degrees) 101.08008266 |
| 9246 | | Shift along axis 279.76221407 |
| 9247 | | |
| 9248 | | |
| 9249 | | > show #!2 models |
| 9250 | | |
| 9251 | | > select add #4 |
| 9252 | | |
| 9253 | | 7501 atoms, 7619 bonds, 953 residues, 1 model selected |
| 9254 | | |
| 9255 | | > select subtract #4 |
| 9256 | | |
| 9257 | | Nothing selected |
| 9258 | | |
| 9259 | | > hide #4 models |
| 9260 | | |
| 9261 | | > hide #!2 models |
| 9262 | | |
| 9263 | | > hide #!1 models |
| 9264 | | |
| 9265 | | > show #!1 models |
| 9266 | | |
| 9267 | | > view orient |
| 9268 | | |
| 9269 | | > show #3 models |
| 9270 | | |
| 9271 | | > show #4 models |
| 9272 | | |
| 9273 | | > show #6 models |
| 9274 | | |
| 9275 | | > show #7 models |
| 9276 | | |
| 9277 | | > show #8 models |
| 9278 | | |
| 9279 | | > show #!9 models |
| 9280 | | |
| 9281 | | > show #10 models |
| 9282 | | |
| 9283 | | > show #11 models |
| 9284 | | |
| 9285 | | > hide #10 models |
| 9286 | | |
| 9287 | | > show #13 models |
| 9288 | | |
| 9289 | | > show #14 models |
| 9290 | | |
| 9291 | | > save /fs/gpfs41/lv09/fileset01/pool/pool- |
| 9292 | | > briggs/taylor/em_data/20220715_COPI_Golph/alignments/alphafold_copi_colored_RT_4.cxs |
| 9293 | | |
| 9294 | | ——— End of log from Tue Nov 7 12:35:14 2023 ——— |
| 9295 | | |
| 9296 | | opened ChimeraX session |
| 9297 | | |
| 9298 | | > show #!2 models |
| 9299 | | |
| 9300 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and |
| 9301 | | > resources/Processing/COPI-Golph_GT/COPI_golph_linkage1_postprocess.mrc" |
| 9302 | | |
| 9303 | | Opened COPI_golph_linkage1_postprocess.mrc as #15, grid size 128,128,128, |
| 9304 | | pixel 3.4, shown at level 0.508, step 1, values float32 |
| 9305 | | |
| 9306 | | > volume #15 level 0.4248 |
| 9307 | | |
| 9308 | | > select add #15 |
| 9309 | | |
| 9310 | | 2 models selected |
| 9311 | | |
| 9312 | | > ui mousemode right "translate selected models" |
| 9313 | | |
| 9314 | | > view matrix models #15,1,0,0,-73.73,0,1,0,34.966,0,0,1,96.96 |
| 9315 | | |
| 9316 | | > hide #!15 models |
| 9317 | | |
| 9318 | | > show #!15 models |
| 9319 | | |
| 9320 | | > hide #14 models |
| 9321 | | |
| 9322 | | > hide #13 models |
| 9323 | | |
| 9324 | | > hide #11 models |
| 9325 | | |
| 9326 | | > hide #!9 models |
| 9327 | | |
| 9328 | | > hide #8 models |
| 9329 | | |
| 9330 | | > hide #7 models |
| 9331 | | |
| 9332 | | > hide #6 models |
| 9333 | | |
| 9334 | | > hide #4 models |
| 9335 | | |
| 9336 | | > hide #3 models |
| 9337 | | |
| 9338 | | > hide #!2 models |
| 9339 | | |
| 9340 | | > hide #!1 models |
| 9341 | | |
| 9342 | | > show #!2 models |
| 9343 | | |
| 9344 | | > view matrix models #15,1,0,0,-226.17,0,1,0,89.162,0,0,1,41.878 |
| 9345 | | |
| 9346 | | > view matrix models #15,1,0,0,-58.982,0,1,0,132.68,0,0,1,89.156 |
| 9347 | | |
| 9348 | | > ui mousemode right "rotate selected models" |
| 9349 | | |
| 9350 | | > view matrix models |
| 9351 | | > #15,0.98223,0.0044902,-0.18765,-6.0444,0.0015777,0.99948,0.032175,123.88,0.18769,-0.031899,0.98171,59.539 |
| 9352 | | |
| 9353 | | > view matrix models |
| 9354 | | > #15,0.98052,0.015967,-0.19577,-5.9641,-0.016526,0.99986,-0.0012203,136.68,0.19572,0.0044318,0.98065,50.268 |
| 9355 | | |
| 9356 | | > ui mousemode right "translate selected models" |
| 9357 | | |
| 9358 | | > view matrix models |
| 9359 | | > #15,0.98052,0.015967,-0.19577,-6.7123,-0.016526,0.99986,-0.0012203,137.02,0.19572,0.0044318,0.98065,22.376 |
| 9360 | | |
| 9361 | | > volume #15 level 0.3841 |
| 9362 | | |
| 9363 | | > show #!1 models |
| 9364 | | |
| 9365 | | > hide #!2 models |
| 9366 | | |
| 9367 | | > hide #!1 models |
| 9368 | | |
| 9369 | | > show #!1 models |
| 9370 | | |
| 9371 | | > show #!2 models |
| 9372 | | |
| 9373 | | > hide #!1 models |
| 9374 | | |
| 9375 | | > color #15 #b2b2b26f models |
| 9376 | | |
| 9377 | | > color #15 #b2b2b266 models |
| 9378 | | |
| 9379 | | > color #15 #b2b2b2a7 models |
| 9380 | | |
| 9381 | | > view matrix models |
| 9382 | | > #15,0.98052,0.015967,-0.19577,8.2659,-0.016526,0.99986,-0.0012203,135.59,0.19572,0.0044318,0.98065,26.362 |
| 9383 | | |
| 9384 | | > view matrix models |
| 9385 | | > #15,0.98052,0.015967,-0.19577,36.638,-0.016526,0.99986,-0.0012203,121.02,0.19572,0.0044318,0.98065,17.22 |
| 9386 | | |
| 9387 | | > view matrix models |
| 9388 | | > #15,0.98052,0.015967,-0.19577,53.856,-0.016526,0.99986,-0.0012203,135.88,0.19572,0.0044318,0.98065,28.038 |
| 9389 | | |
| 9390 | | > view matrix models |
| 9391 | | > #15,0.98052,0.015967,-0.19577,27.557,-0.016526,0.99986,-0.0012203,153.9,0.19572,0.0044318,0.98065,24.813 |
| 9392 | | |
| 9393 | | > show #3 models |
| 9394 | | |
| 9395 | | > view matrix models |
| 9396 | | > #15,0.98052,0.015967,-0.19577,50.336,-0.016526,0.99986,-0.0012203,216.5,0.19572,0.0044318,0.98065,21.949 |
| 9397 | | |
| 9398 | | > view matrix models |
| 9399 | | > #15,0.98052,0.015967,-0.19577,58.964,-0.016526,0.99986,-0.0012203,209.14,0.19572,0.0044318,0.98065,23.112 |
| 9400 | | |
| 9401 | | > view matrix models |
| 9402 | | > #15,0.98052,0.015967,-0.19577,51.096,-0.016526,0.99986,-0.0012203,214.85,0.19572,0.0044318,0.98065,22.124 |
| 9403 | | |
| 9404 | | > ui mousemode right "rotate selected models" |
| 9405 | | |
| 9406 | | > view matrix models |
| 9407 | | > #15,0.86137,0.40179,-0.31082,24.932,-0.45966,0.87696,-0.14023,375.33,0.21623,0.26366,0.94007,-27.258 |
| 9408 | | |
| 9409 | | > view matrix models |
| 9410 | | > #15,0.79215,0.50964,-0.3358,23.588,-0.56964,0.81491,-0.10698,403.94,0.21912,0.27603,0.93584,-29.425 |
| 9411 | | |
| 9412 | | > view matrix models |
| 9413 | | > #15,0.77613,0.58521,-0.23484,-15.943,-0.55601,0.8108,0.18292,324.84,0.29745,-0.011395,0.95467,10.116 |
| 9414 | | |
| 9415 | | > view matrix models |
| 9416 | | > #15,0.79154,0.55932,-0.2462,-10.745,-0.54262,0.82859,0.13787,330.05,0.28111,0.024466,0.95936,4.7514 |
| 9417 | | |
| 9418 | | > ui mousemode right "translate selected models" |
| 9419 | | |
| 9420 | | > view matrix models |
| 9421 | | > #15,0.79154,0.55932,-0.2462,6.5942,-0.54262,0.82859,0.13787,316.28,0.28111,0.024466,0.95936,5.2536 |
| 9422 | | |
| 9423 | | > ui mousemode right "rotate selected models" |
| 9424 | | |
| 9425 | | > view matrix models |
| 9426 | | > #15,0.84779,0.51493,-0.12689,-27.897,-0.4968,0.85484,0.14978,297.43,0.1856,-0.063942,0.98054,39.557 |
| 9427 | | |
| 9428 | | > view matrix models |
| 9429 | | > #15,0.87354,0.48646,0.017035,-65.656,-0.48414,0.86468,0.13391,296.75,0.050414,-0.12523,0.99085,79.624 |
| 9430 | | |
| 9431 | | > ui mousemode right "translate selected models" |
| 9432 | | |
| 9433 | | > view matrix models |
| 9434 | | > #15,0.87354,0.48646,0.017035,-53.181,-0.48414,0.86468,0.13391,267.53,0.050414,-0.12523,0.99085,75.68 |
| 9435 | | |
| 9436 | | > color #15 #b2b2b2cd models |
| 9437 | | |
| 9438 | | > view matrix models |
| 9439 | | > #15,0.87354,0.48646,0.017035,-36.081,-0.48414,0.86468,0.13391,288.3,0.050414,-0.12523,0.99085,77.008 |
| 9440 | | |
| 9441 | | > view matrix models |
| 9442 | | > #15,0.87354,0.48646,0.017035,-66.127,-0.48414,0.86468,0.13391,288.73,0.050414,-0.12523,0.99085,78.763 |
| 9443 | | |
| 9444 | | > color #15 #b2b2b2cc models |
| 9445 | | |
| 9446 | | > view matrix models |
| 9447 | | > #15,0.87354,0.48646,0.017035,-83.691,-0.48414,0.86468,0.13391,287.23,0.050414,-0.12523,0.99085,72.864 |
| 9448 | | |
| 9449 | | > ui mousemode right "rotate selected models" |
| 9450 | | |
| 9451 | | > view matrix models |
| 9452 | | > #15,0.81283,0.58249,-0.0015564,-86.063,-0.58225,0.81241,-0.031082,363.79,-0.016841,0.026171,0.99952,52.8 |
| 9453 | | |
| 9454 | | > ui mousemode right "translate selected models" |
| 9455 | | |
| 9456 | | > view matrix models |
| 9457 | | > #15,0.81283,0.58249,-0.0015564,-74.108,-0.58225,0.81241,-0.031082,372.83,-0.016841,0.026171,0.99952,44.774 |
| 9458 | | |
| 9459 | | > view matrix models |
| 9460 | | > #15,0.81283,0.58249,-0.0015564,-68.602,-0.58225,0.81241,-0.031082,387.08,-0.016841,0.026171,0.99952,60.564 |
| 9461 | | |
| 9462 | | > ui tool show "Fit in Map" |
| 9463 | | |
| 9464 | | > fitmap #15 inMap #2 |
| 9465 | | |
| 9466 | | Fit map COPI_golph_linkage1_postprocess.mrc in map emdb 3720 using 80938 |
| 9467 | | points |
| 9468 | | correlation = 0.3638, correlation about mean = 0.1594, overlap = 958.1 |
| 9469 | | steps = 632, shift = 72.3, angle = 35.2 degrees |
| 9470 | | |
| 9471 | | Position of COPI_golph_linkage1_postprocess.mrc (#15) relative to emdb 3720 |
| 9472 | | (#2) coordinates: |
| 9473 | | Matrix rotation and translation |
| 9474 | | 0.24079995 -0.95955855 -0.14581762 250.87523828 |
| 9475 | | 0.83039920 0.28145928 -0.48085116 -67.76251124 |
| 9476 | | 0.50244656 -0.00529790 0.86459203 -280.59782339 |
| 9477 | | Axis 0.24235349 -0.33037117 0.91220594 |
| 9478 | | Axis point 245.94884364 110.49212662 0.00000000 |
| 9479 | | Rotation angle (degrees) 78.84723205 |
| 9480 | | Shift along axis -172.77573255 |
| 9481 | | |
| 9482 | | |
| 9483 | | > select subtract #15 |
| 9484 | | |
| 9485 | | Nothing selected |
| 9486 | | |
| 9487 | | > hide #3 models |
| 9488 | | |
| 9489 | | > hide #!2 models |
| 9490 | | |
| 9491 | | > show #!1 models |
| 9492 | | |
| 9493 | | > show #3 models |
| 9494 | | |
| 9495 | | > show #4 models |
| 9496 | | |
| 9497 | | > show #6 models |
| 9498 | | |
| 9499 | | > show #7 models |
| 9500 | | |
| 9501 | | > show #8 models |
| 9502 | | |
| 9503 | | > show #!9 models |
| 9504 | | |
| 9505 | | > show #11 models |
| 9506 | | |
| 9507 | | > show #13 models |
| 9508 | | |
| 9509 | | > show #14 models |
| 9510 | | |
| 9511 | | > hide #!1 models |
| 9512 | | |
| 9513 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and |
| 9514 | | > resources/Processing/COPI-Golph_GT/Linkage_1_fitting_Golph_AF_RT.cxs" |
| 9515 | | |
| 9516 | | > show #!2 models |
| 9517 | | |
| 9518 | | > hide #!2 models |
| 9519 | | |
| 9520 | | > hide #3 models |
| 9521 | | |
| 9522 | | > hide #4 models |
| 9523 | | |
| 9524 | | > hide #6 models |
| 9525 | | |
| 9526 | | > hide #7 models |
| 9527 | | |
| 9528 | | > hide #8 models |
| 9529 | | |
| 9530 | | > hide #!9 models |
| 9531 | | |
| 9532 | | > hide #11 models |
| 9533 | | |
| 9534 | | > hide #13 models |
| 9535 | | |
| 9536 | | > hide #14 models |
| 9537 | | |
| 9538 | | > volume #15 level 0.3212 |
| 9539 | | |
| 9540 | | > volume #15 level 0.3724 |
| 9541 | | |
| 9542 | | > rename #3 CopA_F8WHL2 |
| 9543 | | |
| 9544 | | > rename #6 hArf1_P84078 |
| 9545 | | |
| 9546 | | > rename #7 hArf1_P84078 |
| 9547 | | |
| 9548 | | > show #8 models |
| 9549 | | |
| 9550 | | > rename #8 CopD_Q5XJY5 |
| 9551 | | |
| 9552 | | > show #!9 models |
| 9553 | | |
| 9554 | | > hide #!9 models |
| 9555 | | |
| 9556 | | > rename #9 CopG_Q9QZE5 |
| 9557 | | |
| 9558 | | > hide #8 models |
| 9559 | | |
| 9560 | | > rename #12 hArf1_P84078 |
| 9561 | | |
| 9562 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and |
| 9563 | | > resources/Processing/COPI-Golph_GT/Linkage_1_fitting_Golph_AF_RT.cxs" |
| 9564 | | |
| 9565 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and |
| 9566 | | > resources/Processing/References/emd_2986_2015_linkage1.map" |
| 9567 | | |
| 9568 | | Opened emd_2986_2015_linkage1.map as #16, grid size 200,200,200, pixel 2.02, |
| 9569 | | shown at level 3.62, step 1, values float32 |
| 9570 | | |
| 9571 | | > select add #16 |
| 9572 | | |
| 9573 | | 2 models selected |
| 9574 | | |
| 9575 | | > view orient |
| 9576 | | |
| 9577 | | > volume #2 level 0.1928 |
| 9578 | | |
| 9579 | | > volume #16 level 2.055 |
| 9580 | | |
| 9581 | | > view matrix models #16,1,0,0,278.66,0,1,0,276.94,0,0,1,316.22 |
| 9582 | | |
| 9583 | | > view matrix models #16,1,0,0,314.02,0,1,0,383.93,0,0,1,284.35 |
| 9584 | | |
| 9585 | | > ui mousemode right "rotate selected models" |
| 9586 | | |
| 9587 | | > view matrix models |
| 9588 | | > #16,0.9211,0.23554,-0.30999,307.52,-0.039987,0.84925,0.52648,394.98,0.38727,-0.47254,0.79166,279.97 |
| 9589 | | |
| 9590 | | > ui mousemode right "translate selected models" |
| 9591 | | |
| 9592 | | > view matrix models |
| 9593 | | > #16,0.9211,0.23554,-0.30999,274.17,-0.039987,0.84925,0.52648,426.96,0.38727,-0.47254,0.79166,310.55 |
| 9594 | | |
| 9595 | | > ui mousemode right "rotate selected models" |
| 9596 | | |
| 9597 | | > view matrix models |
| 9598 | | > #16,0.84705,0.4058,-0.34327,273.57,-0.22779,0.86068,0.45535,424.96,0.48023,-0.30751,0.82147,311.73 |
| 9599 | | |
| 9600 | | > view matrix models |
| 9601 | | > #16,0.094305,0.61913,-0.77961,262.59,0.22261,0.75015,0.62267,429.53,0.97034,-0.23227,-0.06708,293.82 |
| 9602 | | |
| 9603 | | > view matrix models |
| 9604 | | > #16,0.63479,0.41444,-0.65213,266.35,-0.45893,0.88122,0.1133,417,0.62163,0.22736,0.74959,311.47 |
| 9605 | | |
| 9606 | | > view matrix models |
| 9607 | | > #16,0.7821,0.62298,0.014788,281.56,-0.39044,0.47139,0.79079,431.14,0.48568,-0.62425,0.61191,306.63 |
| 9608 | | |
| 9609 | | > view matrix models |
| 9610 | | > #16,0.75419,0.57526,-0.31665,274.21,-0.54707,0.81716,0.18155,418.14,0.36319,0.036304,0.93101,314.42 |
| 9611 | | |
| 9612 | | > view matrix models |
| 9613 | | > #16,0.40768,0.6183,-0.67194,265.71,-0.51322,0.76379,0.39144,422.69,0.75525,0.18527,0.6287,309.11 |
| 9614 | | |
| 9615 | | > view matrix models |
| 9616 | | > #16,0.57225,0.76359,-0.2991,274.47,-0.5793,0.63455,0.51162,424.9,0.58046,-0.1195,0.80547,311.97 |
| 9617 | | |
| 9618 | | > fitmap #16 inMap #15 |
| 9619 | | |
| 9620 | | Fit map emd_2986_2015_linkage1.map in map COPI_golph_linkage1_postprocess.mrc |
| 9621 | | using 304384 points |
| 9622 | | correlation = 0.9442, correlation about mean = 0.3153, overlap = 4.02e+05 |
| 9623 | | steps = 92, shift = 5.38, angle = 8.38 degrees |
| 9624 | | |
| 9625 | | Position of emd_2986_2015_linkage1.map (#16) relative to |
| 9626 | | COPI_golph_linkage1_postprocess.mrc (#15) coordinates: |
| 9627 | | Matrix rotation and translation |
| 9628 | | 0.99951007 -0.03108553 -0.00364675 217.45099910 |
| 9629 | | 0.03109278 0.99951461 0.00194671 217.65079361 |
| 9630 | | 0.00358447 -0.00205915 0.99999145 304.80668615 |
| 9631 | | Axis -0.06386343 -0.11528365 0.99127753 |
| 9632 | | Axis point -7856.22741698 7659.73186145 0.00000000 |
| 9633 | | Rotation angle (degrees) 1.79724595 |
| 9634 | | Shift along axis 263.16927579 |
| 9635 | | |
| 9636 | | |
| 9637 | | > hide #!2 models |
| 9638 | | |
| 9639 | | > hide #!16 models |
| 9640 | | |
| 9641 | | > show #!16 models |
| 9642 | | |
| 9643 | | > hide #!16 models |
| 9644 | | |
| 9645 | | > show #!16 models |
| 9646 | | |
| 9647 | | > hide #!16 models |
| 9648 | | |
| 9649 | | > show #!16 models |
| 9650 | | |
| 9651 | | > hide #!16 models |
| 9652 | | |
| 9653 | | > show #!16 models |
| 9654 | | |
| 9655 | | > select subtract #16 |
| 9656 | | |
| 9657 | | Nothing selected |
| 9658 | | |
| 9659 | | > hide #!16 models |
| 9660 | | |
| 9661 | | > show #!16 models |
| 9662 | | |
| 9663 | | > hide #!16 models |
| 9664 | | |
| 9665 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and |
| 9666 | | > resources/Processing/References/emd_3722_2017_linkage1.map" |
| 9667 | | |
| 9668 | | Opened emd_3722_2017_linkage1.map as #17, grid size 212,212,212, pixel 1.78, |
| 9669 | | shown at level 0.0843, step 1, values float32 |
| 9670 | | |
| 9671 | | > volume #17 level 0.03583 |
| 9672 | | |
| 9673 | | > select add #17 |
| 9674 | | |
| 9675 | | 2 models selected |
| 9676 | | |
| 9677 | | > ui mousemode right "translate selected models" |
| 9678 | | |
| 9679 | | > view matrix models #17,1,0,0,144.81,0,1,0,167.76,0,0,1,191.42 |
| 9680 | | |
| 9681 | | > view matrix models #17,1,0,0,98.86,0,1,0,202.13,0,0,1,156.34 |
| 9682 | | |
| 9683 | | > ui mousemode right "rotate selected models" |
| 9684 | | |
| 9685 | | > view matrix models |
| 9686 | | > #17,-0.41117,0.899,-0.15079,219.81,-0.69907,-0.20482,0.68509,449.79,0.58501,0.3871,0.71268,19.753 |
| 9687 | | |
| 9688 | | > view matrix models |
| 9689 | | > #17,-0.768,0.57205,0.28799,277.81,-0.015321,-0.46594,0.88468,338.08,0.64027,0.67502,0.36661,10.921 |
| 9690 | | |
| 9691 | | > view matrix models |
| 9692 | | > #17,-0.49445,0.8172,0.29616,178.99,0.30081,-0.15879,0.94037,211.97,0.81549,0.55406,-0.16731,86.496 |
| 9693 | | |
| 9694 | | > view matrix models |
| 9695 | | > #17,-0.51648,0.74901,-0.41502,310.27,-0.70967,-0.10318,0.69694,430.79,0.47919,0.65448,0.58483,10.006 |
| 9696 | | |
| 9697 | | > view matrix models |
| 9698 | | > #17,-0.41194,0.8427,-0.34665,262.01,-0.81675,-0.1728,0.55051,487.55,0.40401,0.50991,0.75946,23.231 |
| 9699 | | |
| 9700 | | > ui mousemode right "translate selected models" |
| 9701 | | |
| 9702 | | > view matrix models |
| 9703 | | > #17,-0.41194,0.8427,-0.34665,-69.085,-0.81675,-0.1728,0.55051,318.09,0.40401,0.50991,0.75946,-135.89 |
| 9704 | | |
| 9705 | | > view matrix models |
| 9706 | | > #17,-0.41194,0.8427,-0.34665,250.19,-0.81675,-0.1728,0.55051,510.18,0.40401,0.50991,0.75946,-8.5576 |
| 9707 | | |
| 9708 | | > ui mousemode right "rotate selected models" |
| 9709 | | |
| 9710 | | > view matrix models |
| 9711 | | > #17,-0.70549,0.67986,-0.20018,312.46,-0.335,-0.070995,0.93954,337.88,0.62455,0.7299,0.27784,-13.944 |
| 9712 | | |
| 9713 | | > view matrix models |
| 9714 | | > #17,-0.48961,0.53476,-0.68871,377.62,-0.8124,0.0070959,0.58305,470.35,0.31668,0.84497,0.43097,-2.2417 |
| 9715 | | |
| 9716 | | > view matrix models |
| 9717 | | > #17,-0.50936,0.83183,-0.22048,250.28,-0.76322,-0.31832,0.56229,525.55,0.39754,0.45468,0.79701,-3.0074 |
| 9718 | | |
| 9719 | | > view matrix models |
| 9720 | | > #17,-0.67427,0.45577,-0.58106,409.9,-0.62558,0.065621,0.7774,392.97,0.39244,0.88768,0.24087,6.0427 |
| 9721 | | |
| 9722 | | > view matrix models |
| 9723 | | > #17,-0.72949,0.59011,-0.34584,357.25,-0.68333,-0.60655,0.4064,589.7,0.030051,0.53279,0.84571,43.644 |
| 9724 | | |
| 9725 | | > fitmap #17 inMap #15 |
| 9726 | | |
| 9727 | | Fit map emd_3722_2017_linkage1.map in map COPI_golph_linkage1_postprocess.mrc |
| 9728 | | using 723117 points |
| 9729 | | correlation = 0.9448, correlation about mean = 0.4448, overlap = 1.725e+04 |
| 9730 | | steps = 80, shift = 5.27, angle = 4.21 degrees |
| 9731 | | |
| 9732 | | Position of emd_3722_2017_linkage1.map (#17) relative to |
| 9733 | | COPI_golph_linkage1_postprocess.mrc (#15) coordinates: |
| 9734 | | Matrix rotation and translation |
| 9735 | | 0.11586229 0.99297385 0.02405942 4.16632834 |
| 9736 | | -0.99323203 0.11562620 0.01098721 377.48279546 |
| 9737 | | 0.00812812 -0.02516959 0.99965015 115.04537270 |
| 9738 | | Axis -0.01820035 0.00801938 -0.99980220 |
| 9739 | | Axis point 213.55721314 188.00836730 0.00000000 |
| 9740 | | Rotation angle (degrees) 83.36353620 |
| 9741 | | Shift along axis -112.07126543 |
| 9742 | | |
| 9743 | | |
| 9744 | | > view matrix models |
| 9745 | | > #17,-0.66805,0.66076,-0.3422,336.84,-0.74292,-0.56619,0.35708,600.16,0.042194,0.49277,0.86914,46.321 |
| 9746 | | |
| 9747 | | > fitmap #17 inMap #15 |
| 9748 | | |
| 9749 | | Fit map emd_3722_2017_linkage1.map in map COPI_golph_linkage1_postprocess.mrc |
| 9750 | | using 723117 points |
| 9751 | | correlation = 0.9449, correlation about mean = 0.4447, overlap = 1.725e+04 |
| 9752 | | steps = 64, shift = 0.139, angle = 1.54 degrees |
| 9753 | | |
| 9754 | | Position of emd_3722_2017_linkage1.map (#17) relative to |
| 9755 | | COPI_golph_linkage1_postprocess.mrc (#15) coordinates: |
| 9756 | | Matrix rotation and translation |
| 9757 | | 0.11577968 0.99298493 0.02400000 4.18525548 |
| 9758 | | -0.99324192 0.11554509 0.01094590 377.50750041 |
| 9759 | | 0.00809604 -0.02510512 0.99965203 114.97681952 |
| 9760 | | Axis -0.01814693 0.00800555 -0.99980328 |
| 9761 | | Axis point 213.56543340 188.00511122 0.00000000 |
| 9762 | | Rotation angle (degrees) 83.36820385 |
| 9763 | | Shift along axis -112.00799683 |
| 9764 | | |
| 9765 | | |
| 9766 | | > fitmap #17 inMap #15 |
| 9767 | | |
| 9768 | | Fit map emd_3722_2017_linkage1.map in map COPI_golph_linkage1_postprocess.mrc |
| 9769 | | using 723117 points |
| 9770 | | correlation = 0.9449, correlation about mean = 0.4447, overlap = 1.725e+04 |
| 9771 | | steps = 24, shift = 0.0151, angle = 0.00227 degrees |
| 9772 | | |
| 9773 | | Position of emd_3722_2017_linkage1.map (#17) relative to |
| 9774 | | COPI_golph_linkage1_postprocess.mrc (#15) coordinates: |
| 9775 | | Matrix rotation and translation |
| 9776 | | 0.11574972 0.99298833 0.02400375 4.18939547 |
| 9777 | | -0.99324562 0.11551574 0.01091971 377.51882888 |
| 9778 | | 0.00807034 -0.02510557 0.99965223 114.96666815 |
| 9779 | | Axis -0.01813392 0.00802034 -0.99980340 |
| 9780 | | Axis point 213.56917414 188.00831708 0.00000000 |
| 9781 | | Rotation angle (degrees) 83.36990886 |
| 9782 | | Shift along axis -111.99220521 |
| 9783 | | |
| 9784 | | |
| 9785 | | > fitmap #17 inMap #15 |
| 9786 | | |
| 9787 | | Fit map emd_3722_2017_linkage1.map in map COPI_golph_linkage1_postprocess.mrc |
| 9788 | | using 723117 points |
| 9789 | | correlation = 0.9448, correlation about mean = 0.4448, overlap = 1.725e+04 |
| 9790 | | steps = 28, shift = 0.0944, angle = 0.0261 degrees |
| 9791 | | |
| 9792 | | Position of emd_3722_2017_linkage1.map (#17) relative to |
| 9793 | | COPI_golph_linkage1_postprocess.mrc (#15) coordinates: |
| 9794 | | Matrix rotation and translation |
| 9795 | | 0.11612366 0.99294047 0.02417693 4.10484990 |
| 9796 | | -0.99320060 0.11588337 0.01111788 377.40674556 |
| 9797 | | 0.00823769 -0.02530359 0.99964587 115.06782484 |
| 9798 | | Axis -0.01833413 0.00802362 -0.99979972 |
| 9799 | | Axis point 213.53212323 188.01353754 0.00000000 |
| 9800 | | Rotation angle (degrees) 83.34870436 |
| 9801 | | Shift along axis -112.09186818 |
| 9802 | | |
| 9803 | | |
| 9804 | | > fitmap #17 inMap #15 |
| 9805 | | |
| 9806 | | Fit map emd_3722_2017_linkage1.map in map COPI_golph_linkage1_postprocess.mrc |
| 9807 | | using 723117 points |
| 9808 | | correlation = 0.9448, correlation about mean = 0.4448, overlap = 1.725e+04 |
| 9809 | | steps = 40, shift = 0.0169, angle = 0.0175 degrees |
| 9810 | | |
| 9811 | | Position of emd_3722_2017_linkage1.map (#17) relative to |
| 9812 | | COPI_golph_linkage1_postprocess.mrc (#15) coordinates: |
| 9813 | | Matrix rotation and translation |
| 9814 | | 0.11589589 0.99297080 0.02402345 4.16654300 |
| 9815 | | -0.99322813 0.11566026 0.01098070 377.47647231 |
| 9816 | | 0.00812495 -0.02513339 0.99965109 115.03925499 |
| 9817 | | Axis -0.01817892 0.00800291 -0.99980272 |
| 9818 | | Axis point 213.56129838 188.00272386 0.00000000 |
| 9819 | | Rotation angle (degrees) 83.36155775 |
| 9820 | | Shift along axis -112.07139468 |
| 9821 | | |
| 9822 | | |
| 9823 | | > fitmap #17 inMap #15 |
| 9824 | | |
| 9825 | | Fit map emd_3722_2017_linkage1.map in map COPI_golph_linkage1_postprocess.mrc |
| 9826 | | using 723117 points |
| 9827 | | correlation = 0.9448, correlation about mean = 0.4448, overlap = 1.725e+04 |
| 9828 | | steps = 44, shift = 0.0017, angle = 0.0108 degrees |
| 9829 | | |
| 9830 | | Position of emd_3722_2017_linkage1.map (#17) relative to |
| 9831 | | COPI_golph_linkage1_postprocess.mrc (#15) coordinates: |
| 9832 | | Matrix rotation and translation |
| 9833 | | 0.11604249 0.99295154 0.02411174 4.12742813 |
| 9834 | | -0.99321047 0.11580416 0.01106106 377.43274324 |
| 9835 | | 0.00819086 -0.02523158 0.99964808 115.04508414 |
| 9836 | | Axis -0.01826912 0.00801430 -0.99980099 |
| 9837 | | Axis point 213.54398929 188.00902801 0.00000000 |
| 9838 | | Rotation angle (degrees) 83.35326632 |
| 9839 | | Shift along axis -112.07273251 |
| 9840 | | |
| 9841 | | |
| 9842 | | > fitmap #17 inMap #15 |
| 9843 | | |
| 9844 | | Fit map emd_3722_2017_linkage1.map in map COPI_golph_linkage1_postprocess.mrc |
| 9845 | | using 723117 points |
| 9846 | | correlation = 0.9449, correlation about mean = 0.4447, overlap = 1.725e+04 |
| 9847 | | steps = 28, shift = 0.0715, angle = 0.0128 degrees |
| 9848 | | |
| 9849 | | Position of emd_3722_2017_linkage1.map (#17) relative to |
| 9850 | | COPI_golph_linkage1_postprocess.mrc (#15) coordinates: |
| 9851 | | Matrix rotation and translation |
| 9852 | | 0.11613389 0.99294550 0.02391956 4.13714493 |
| 9853 | | -0.99320018 0.11589886 0.01099299 377.42409910 |
| 9854 | | 0.00814319 -0.02503357 0.99965344 114.94432756 |
| 9855 | | Axis -0.01813537 0.00794165 -0.99980400 |
| 9856 | | Axis point 213.56768474 187.98538808 0.00000000 |
| 9857 | | Rotation angle (degrees) 83.34774404 |
| 9858 | | Shift along axis -111.99945594 |
| 9859 | | |
| 9860 | | |
| 9861 | | > select subtract #17 |
| 9862 | | |
| 9863 | | Nothing selected |
| 9864 | | |
| 9865 | | > ui mousemode right zoom |
| 9866 | | |
| 9867 | | > hide #!15 models |
| 9868 | | |
| 9869 | | > show #!2 models |
| 9870 | | |
| 9871 | | > hide #!2 models |
| 9872 | | |
| 9873 | | > show #!2 models |
| 9874 | | |
| 9875 | | > hide #!2 models |
| 9876 | | |
| 9877 | | > show #3 models |
| 9878 | | |
| 9879 | | > show #4 models |
| 9880 | | |
| 9881 | | > show #6 models |
| 9882 | | |
| 9883 | | > hide #3 models |
| 9884 | | |
| 9885 | | > hide #4 models |
| 9886 | | |
| 9887 | | > hide #6 models |
| 9888 | | |
| 9889 | | > show #13 models |
| 9890 | | |
| 9891 | | > hide #13 models |
| 9892 | | |
| 9893 | | > show #!15 models |
| 9894 | | |
| 9895 | | > show #13 models |
| 9896 | | |
| 9897 | | > hide #13 models |
| 9898 | | |
| 9899 | | > hide #!15 models |
| 9900 | | |
| 9901 | | > hide #!17 models |
| 9902 | | |
| 9903 | | > show #!15 models |
| 9904 | | |
| 9905 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and |
| 9906 | | > resources/Processing/COPI-Golph_GT/Linkage_1_fitting_Golph_AF_RT.cxs" |
| 9907 | | |
| 9908 | | [Repeated 1 time(s)] |
| 9909 | | |
| 9910 | | ——— End of log from Tue Dec 5 14:45:54 2023 ——— |
| 9911 | | |
| 9912 | | opened ChimeraX session |
| 9913 | | |
| 9914 | | > hide #!15 target m |
| 9915 | | |
| 9916 | | > show #!2 models |
| 9917 | | |
| 9918 | | > volume #2 level 0.1535 |
| 9919 | | |
| 9920 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and |
| 9921 | | > resources/Processing/COPI-Golph_GT/COPI_golph_linkage2_postprocess.mrc" |
| 9922 | | |
| 9923 | | Opened COPI_golph_linkage2_postprocess.mrc as #18, grid size 150,150,150, |
| 9924 | | pixel 3.4, shown at level 0.579, step 1, values float32 |
| 9925 | | |
| 9926 | | > color #18 #b2b2b2b5 models |
| 9927 | | |
| 9928 | | > volume #18 level 0.4748 |
| 9929 | | |
| 9930 | | > select add #18 |
| 9931 | | |
| 9932 | | 2 models selected |
| 9933 | | |
| 9934 | | > show #8 models |
| 9935 | | |
| 9936 | | > ui mousemode right "translate selected models" |
| 9937 | | |
| 9938 | | > view matrix models #18,1,0,0,37.911,0,1,0,323.13,0,0,1,-76.889 |
| 9939 | | |
| 9940 | | > view matrix models #18,1,0,0,78.69,0,1,0,212.38,0,0,1,15.274 |
| 9941 | | |
| 9942 | | > view matrix models #18,1,0,0,41.63,0,1,0,189.41,0,0,1,-19.748 |
| 9943 | | |
| 9944 | | > view matrix models #18,1,0,0,166.87,0,1,0,48.28,0,0,1,-38.706 |
| 9945 | | |
| 9946 | | > view matrix models #18,1,0,0,212.77,0,1,0,89.771,0,0,1,-19.788 |
| 9947 | | |
| 9948 | | > view matrix models #18,1,0,0,370.65,0,1,0,-18.809,0,0,1,48.477 |
| 9949 | | |
| 9950 | | > view matrix models #18,1,0,0,-123.38,0,1,0,161.02,0,0,1,-93.371 |
| 9951 | | |
| 9952 | | > view matrix models #18,1,0,0,8.8176,0,1,0,138.79,0,0,1,-50.705 |
| 9953 | | |
| 9954 | | > view matrix models #18,1,0,0,-48.069,0,1,0,187.67,0,0,1,3.1902 |
| 9955 | | |
| 9956 | | > ui mousemode right "rotate selected models" |
| 9957 | | |
| 9958 | | > view matrix models |
| 9959 | | > #18,0.92266,-0.045215,-0.38295,92.378,0.12648,0.97365,0.18977,105.95,0.36427,-0.22353,0.90407,-14.377 |
| 9960 | | |
| 9961 | | > ui mousemode right "translate selected models" |
| 9962 | | |
| 9963 | | > view matrix models |
| 9964 | | > #18,0.92266,-0.045215,-0.38295,114.12,0.12648,0.97365,0.18977,62.084,0.36427,-0.22353,0.90407,-3.5048 |
| 9965 | | |
| 9966 | | > show #3 models |
| 9967 | | |
| 9968 | | > view matrix models |
| 9969 | | > #18,0.92266,-0.045215,-0.38295,157.67,0.12648,0.97365,0.18977,73.286,0.36427,-0.22353,0.90407,18.682 |
| 9970 | | |
| 9971 | | > view matrix models |
| 9972 | | > #18,0.92266,-0.045215,-0.38295,163.14,0.12648,0.97365,0.18977,98.07,0.36427,-0.22353,0.90407,26.33 |
| 9973 | | |
| 9974 | | > view matrix models |
| 9975 | | > #18,0.92266,-0.045215,-0.38295,170.88,0.12648,0.97365,0.18977,97.935,0.36427,-0.22353,0.90407,41.323 |
| 9976 | | |
| 9977 | | > view matrix models |
| 9978 | | > #18,0.92266,-0.045215,-0.38295,166.77,0.12648,0.97365,0.18977,87.449,0.36427,-0.22353,0.90407,32.195 |
| 9979 | | |
| 9980 | | > ui mousemode right "rotate selected models" |
| 9981 | | |
| 9982 | | > view matrix models |
| 9983 | | > #18,0.91983,-0.20028,-0.33736,192.99,0.17356,0.97889,-0.10792,157.26,0.35185,0.040715,0.93517,-38.458 |
| 9984 | | |
| 9985 | | > view matrix models |
| 9986 | | > #18,0.97834,-0.12989,-0.16116,109.83,0.11624,0.989,-0.091499,165.84,0.17128,0.070784,0.98268,-9.7907 |
| 9987 | | |
| 9988 | | > view matrix models |
| 9989 | | > #18,0.91272,-0.39632,-0.099394,176.21,0.38748,0.91674,-0.097195,110.94,0.12964,0.050198,0.99029,4.5614 |
| 9990 | | |
| 9991 | | > view matrix models |
| 9992 | | > #18,0.96031,-0.12322,-0.25025,138.27,0.078274,0.98014,-0.18223,204.05,0.26774,0.15541,0.95088,-48.166 |
| 9993 | | |
| 9994 | | > hide #3 models |
| 9995 | | |
| 9996 | | > hide #!2 models |
| 9997 | | |
| 9998 | | > show #!2 models |
| 9999 | | |
| 10000 | | > hide #8 models |
| 10001 | | |
| 10002 | | > show #8 models |
| 10003 | | |
| 10004 | | > hide #8 models |
| 10005 | | |
| 10006 | | > show #8 models |
| 10007 | | |
| 10008 | | > view matrix models |
| 10009 | | > #18,-0.26333,-0.74291,-0.61542,729.88,0.77204,-0.5448,0.32732,246.78,-0.57845,-0.38894,0.71702,384.29 |
| 10010 | | |
| 10011 | | > ui mousemode right "translate selected models" |
| 10012 | | |
| 10013 | | > view matrix models |
| 10014 | | > #18,-0.26333,-0.74291,-0.61542,640.99,0.77204,-0.5448,0.32732,186.86,-0.57845,-0.38894,0.71702,316.02 |
| 10015 | | |
| 10016 | | > view matrix models |
| 10017 | | > #18,-0.26333,-0.74291,-0.61542,639.87,0.77204,-0.5448,0.32732,168.07,-0.57845,-0.38894,0.71702,316.46 |
| 10018 | | |
| 10019 | | > view matrix models |
| 10020 | | > #18,-0.26333,-0.74291,-0.61542,670.85,0.77204,-0.5448,0.32732,116.2,-0.57845,-0.38894,0.71702,308.88 |
| 10021 | | |
| 10022 | | > view matrix models |
| 10023 | | > #18,-0.26333,-0.74291,-0.61542,668.36,0.77204,-0.5448,0.32732,123.07,-0.57845,-0.38894,0.71702,309.05 |
| 10024 | | |
| 10025 | | > view matrix models |
| 10026 | | > #18,-0.26333,-0.74291,-0.61542,694.65,0.77204,-0.5448,0.32732,98.173,-0.57845,-0.38894,0.71702,322.41 |
| 10027 | | |
| 10028 | | > view matrix models |
| 10029 | | > #18,-0.26333,-0.74291,-0.61542,696.9,0.77204,-0.5448,0.32732,106.33,-0.57845,-0.38894,0.71702,322.54 |
| 10030 | | |
| 10031 | | > view matrix models |
| 10032 | | > #18,-0.26333,-0.74291,-0.61542,689.63,0.77204,-0.5448,0.32732,111.08,-0.57845,-0.38894,0.71702,323.37 |
| 10033 | | |
| 10034 | | > select subtract #18 |
| 10035 | | |
| 10036 | | Nothing selected |
| 10037 | | |
| 10038 | | > ui tool show "Fit in Map" |
| 10039 | | |
| 10040 | | > fitmap #18 inMap #2 |
| 10041 | | |
| 10042 | | Fit map COPI_golph_linkage2_postprocess.mrc in map emdb 3720 using 76728 |
| 10043 | | points |
| 10044 | | correlation = 0.393, correlation about mean = 0.1787, overlap = 1304 |
| 10045 | | steps = 416, shift = 13.5, angle = 30.6 degrees |
| 10046 | | |
| 10047 | | Position of COPI_golph_linkage2_postprocess.mrc (#18) relative to emdb 3720 |
| 10048 | | (#2) coordinates: |
| 10049 | | Matrix rotation and translation |
| 10050 | | -0.29086353 0.88764467 0.35705090 -72.93361915 |
| 10051 | | -0.93714915 -0.18913877 -0.29322005 460.35677211 |
| 10052 | | -0.19274305 -0.41989697 0.88686901 -44.24127869 |
| 10053 | | Axis -0.06632215 0.28784657 -0.95537727 |
| 10054 | | Axis point 122.59971391 247.03643730 0.00000000 |
| 10055 | | Rotation angle (degrees) 107.25150392 |
| 10056 | | Shift along axis 179.61634476 |
| 10057 | | |
| 10058 | | |
| 10059 | | > show #!15 models |
| 10060 | | |
| 10061 | | > hide #!15 models |
| 10062 | | |
| 10063 | | > show #!15 models |
| 10064 | | |
| 10065 | | > hide #!18 models |
| 10066 | | |
| 10067 | | > hide #!15 models |
| 10068 | | |
| 10069 | | > show #!18 models |
| 10070 | | |
| 10071 | | > show #!1 models |
| 10072 | | |
| 10073 | | > hide #!1 models |
| 10074 | | |
| 10075 | | > show #3 models |
| 10076 | | |
| 10077 | | > show #4 models |
| 10078 | | |
| 10079 | | > show #6 models |
| 10080 | | |
| 10081 | | > show #7 models |
| 10082 | | |
| 10083 | | > show #!9 models |
| 10084 | | |
| 10085 | | > show #10 models |
| 10086 | | |
| 10087 | | > hide #10 models |
| 10088 | | |
| 10089 | | > show #11 models |
| 10090 | | |
| 10091 | | > show #13 models |
| 10092 | | |
| 10093 | | > show #14 models |
| 10094 | | |
| 10095 | | > hide #!2 models |
| 10096 | | |
| 10097 | | > show #!2 models |
| 10098 | | |
| 10099 | | > hide #!2 models |
| 10100 | | |
| 10101 | | > show #!2 models |
| 10102 | | |
| 10103 | | > hide #!2 models |
| 10104 | | |
| 10105 | | > show #!2 models |
| 10106 | | |
| 10107 | | > hide #!2 models |
| 10108 | | |
| 10109 | | > show #!2 models |
| 10110 | | |
| 10111 | | > hide #!2 models |
| 10112 | | |
| 10113 | | > show #!2 models |
| 10114 | | |
| 10115 | | > hide #!2 models |
| 10116 | | |
| 10117 | | > show #!2 models |
| 10118 | | |
| 10119 | | > hide #!2 models |
| 10120 | | |
| 10121 | | > show #!2 models |
| 10122 | | |
| 10123 | | > hide #!2 models |
| 10124 | | |
| 10125 | | > show #!2 models |
| 10126 | | |
| 10127 | | > hide #!2 models |
| 10128 | | |
| 10129 | | > show #!2 models |
| 10130 | | |
| 10131 | | > hide #!2 models |
| 10132 | | |
| 10133 | | > show #!1 models |
| 10134 | | |
| 10135 | | > hide #!1 models |
| 10136 | | |
| 10137 | | > show #!2 models |
| 10138 | | |
| 10139 | | > show #!1 models |
| 10140 | | |
| 10141 | | > hide #!1 models |
| 10142 | | |
| 10143 | | > show #!1 models |
| 10144 | | |
| 10145 | | > hide #4 models |
| 10146 | | |
| 10147 | | > show #5 models |
| 10148 | | |
| 10149 | | > hide #!1 models |
| 10150 | | |
| 10151 | | > show #!1 models |
| 10152 | | |
| 10153 | | > hide #!1 models |
| 10154 | | |
| 10155 | | > show #!1 models |
| 10156 | | |
| 10157 | | > hide #!18 models |
| 10158 | | |
| 10159 | | > show #!18 models |
| 10160 | | |
| 10161 | | > hide #!18 models |
| 10162 | | |
| 10163 | | > show #!18 models |
| 10164 | | |
| 10165 | | > hide #!18 models |
| 10166 | | |
| 10167 | | > show #!18 models |
| 10168 | | |
| 10169 | | > hide #!18 models |
| 10170 | | |
| 10171 | | > show #!18 models |
| 10172 | | |
| 10173 | | > hide #14 models |
| 10174 | | |
| 10175 | | > hide #13 models |
| 10176 | | |
| 10177 | | > hide #11 models |
| 10178 | | |
| 10179 | | > hide #!9 models |
| 10180 | | |
| 10181 | | > hide #8 models |
| 10182 | | |
| 10183 | | > hide #7 models |
| 10184 | | |
| 10185 | | > hide #6 models |
| 10186 | | |
| 10187 | | > hide #5 models |
| 10188 | | |
| 10189 | | > hide #3 models |
| 10190 | | |
| 10191 | | > hide #!2 models |
| 10192 | | |
| 10193 | | > hide #!1 models |
| 10194 | | |
| 10195 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and |
| 10196 | | > resources/Processing/References/emd_2987_2015_linkage2.map" |
| 10197 | | |
| 10198 | | Opened emd_2987_2015_linkage2.map as #19, grid size 200,200,200, pixel 2.02, |
| 10199 | | shown at level 3.35, step 1, values float32 |
| 10200 | | |
| 10201 | | > volume #19 level 1.908 |
| 10202 | | |
| 10203 | | > select add #19 |
| 10204 | | |
| 10205 | | 2 models selected |
| 10206 | | |
| 10207 | | > view matrix models #19,1,0,0,281.34,0,1,0,349.41,0,0,1,125.42 |
| 10208 | | |
| 10209 | | > view matrix models #19,1,0,0,221.57,0,1,0,296.89,0,0,1,303 |
| 10210 | | |
| 10211 | | > ui mousemode right "rotate selected models" |
| 10212 | | |
| 10213 | | > view matrix models |
| 10214 | | > #19,0.89469,0.0047926,-0.44667,207.18,0.15862,0.93137,0.32771,307.33,0.41758,-0.36405,0.83252,296.99 |
| 10215 | | |
| 10216 | | > view matrix models |
| 10217 | | > #19,0.96644,-0.22088,-0.13116,216.95,0.22139,0.97513,-0.010844,296.51,0.1303,-0.018558,0.9913,302.7 |
| 10218 | | |
| 10219 | | > view matrix models |
| 10220 | | > #19,0.60959,-0.39067,-0.68977,198.63,0.71217,0.65206,0.26007,304.7,0.34817,-0.64976,0.67571,291.43 |
| 10221 | | |
| 10222 | | > view matrix models |
| 10223 | | > #19,-0.58102,-0.73076,-0.35834,208.62,0.81146,-0.48613,-0.32437,283.86,0.062839,-0.47924,0.87543,298.14 |
| 10224 | | |
| 10225 | | > ui mousemode right "translate selected models" |
| 10226 | | |
| 10227 | | > view matrix models |
| 10228 | | > #19,-0.58102,-0.73076,-0.35834,209.59,0.81146,-0.48613,-0.32437,286.9,0.062839,-0.47924,0.87543,328.25 |
| 10229 | | |
| 10230 | | > view matrix models |
| 10231 | | > #19,-0.58102,-0.73076,-0.35834,225.92,0.81146,-0.48613,-0.32437,276.76,0.062839,-0.47924,0.87543,330.19 |
| 10232 | | |
| 10233 | | > ui mousemode right "rotate selected models" |
| 10234 | | |
| 10235 | | > view matrix models |
| 10236 | | > #19,-0.51565,-0.72069,-0.46336,222.56,0.85324,-0.48117,-0.20114,280.74,-0.077999,-0.49907,0.86304,329.75 |
| 10237 | | |
| 10238 | | > view matrix models |
| 10239 | | > #19,-0.55739,-0.73804,-0.38027,225.2,0.83025,-0.49523,-0.25581,278.96,0.0004801,-0.45831,0.88879,330.65 |
| 10240 | | |
| 10241 | | > view matrix models |
| 10242 | | > #19,-0.65627,-0.64485,-0.39176,224.99,0.75157,-0.60456,-0.26389,278.49,-0.066669,-0.46762,0.88141,330.4 |
| 10243 | | |
| 10244 | | > fitmap #19 inMap #18 |
| 10245 | | |
| 10246 | | Fit map emd_2987_2015_linkage2.map in map COPI_golph_linkage2_postprocess.mrc |
| 10247 | | using 245288 points |
| 10248 | | correlation = 0.9621, correlation about mean = 0.4468, overlap = 4.315e+05 |
| 10249 | | steps = 64, shift = 13.6, angle = 9.64 degrees |
| 10250 | | |
| 10251 | | Position of emd_2987_2015_linkage2.map (#19) relative to |
| 10252 | | COPI_golph_linkage2_postprocess.mrc (#18) coordinates: |
| 10253 | | Matrix rotation and translation |
| 10254 | | 0.99943198 -0.03369827 0.00038712 255.16295945 |
| 10255 | | 0.03369824 0.99943205 0.00008535 255.14695389 |
| 10256 | | -0.00038977 -0.00007225 0.99999992 337.62488892 |
| 10257 | | Axis -0.00233824 0.01152634 0.99993084 |
| 10258 | | Axis point -7325.14771320 7719.05156474 0.00000000 |
| 10259 | | Rotation angle (degrees) 1.93126701 |
| 10260 | | Shift along axis 339.94581739 |
| 10261 | | |
| 10262 | | |
| 10263 | | > select subtract #19 |
| 10264 | | |
| 10265 | | Nothing selected |
| 10266 | | |
| 10267 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and |
| 10268 | | > resources/Processing/References/emd_3723_2017_linkage2.map" |
| 10269 | | |
| 10270 | | Opened emd_3723_2017_linkage2.map as #20, grid size 212,212,212, pixel 1.78, |
| 10271 | | shown at level 0.1, step 1, values float32 |
| 10272 | | |
| 10273 | | > select add #20 |
| 10274 | | |
| 10275 | | 2 models selected |
| 10276 | | |
| 10277 | | > volume #20 level 0.0556 |
| 10278 | | |
| 10279 | | > hide #!19 models |
| 10280 | | |
| 10281 | | > view matrix models |
| 10282 | | > #20,0.97164,-0.02719,-0.2349,49.932,-0.049625,0.9478,-0.31498,72.049,0.23121,0.3177,0.91957,-88.787 |
| 10283 | | |
| 10284 | | > ui mousemode right "translate selected models" |
| 10285 | | |
| 10286 | | > view matrix models |
| 10287 | | > #20,0.97164,-0.02719,-0.2349,112.83,-0.049625,0.9478,-0.31498,201.68,0.23121,0.3177,0.91957,-14.58 |
| 10288 | | |
| 10289 | | > view matrix models |
| 10290 | | > #20,0.97164,-0.02719,-0.2349,66.5,-0.049625,0.9478,-0.31498,186.06,0.23121,0.3177,0.91957,18.141 |
| 10291 | | |
| 10292 | | > ui mousemode right "rotate selected models" |
| 10293 | | |
| 10294 | | > view matrix models |
| 10295 | | > #20,0.8629,0.037701,-0.50397,119.87,-0.11576,0.98545,-0.12448,159.18,0.49195,0.16575,0.8547,9.1445 |
| 10296 | | |
| 10297 | | > ui mousemode right "translate selected models" |
| 10298 | | |
| 10299 | | > view matrix models |
| 10300 | | > #20,0.8629,0.037701,-0.50397,167.83,-0.11576,0.98545,-0.12448,147.77,0.49195,0.16575,0.8547,10.969 |
| 10301 | | |
| 10302 | | > fitmap #20 inMap #18 |
| 10303 | | |
| 10304 | | Fit map emd_3723_2017_linkage2.map in map COPI_golph_linkage2_postprocess.mrc |
| 10305 | | using 430908 points |
| 10306 | | correlation = 0.9553, correlation about mean = 0.437, overlap = 1.937e+04 |
| 10307 | | steps = 128, shift = 13.7, angle = 16 degrees |
| 10308 | | |
| 10309 | | Position of emd_3723_2017_linkage2.map (#20) relative to |
| 10310 | | COPI_golph_linkage2_postprocess.mrc (#18) coordinates: |
| 10311 | | Matrix rotation and translation |
| 10312 | | -0.52283140 0.85243566 0.00087740 192.72826004 |
| 10313 | | -0.85243398 -0.52283212 0.00169730 514.37823243 |
| 10314 | | 0.00190557 0.00013948 0.99999818 127.27802922 |
| 10315 | | Axis -0.00091375 -0.00060308 -0.99999940 |
| 10316 | | Axis point 240.25113231 203.24167526 0.00000000 |
| 10317 | | Rotation angle (degrees) 121.52245397 |
| 10318 | | Shift along axis -127.76426867 |
| 10319 | | |
| 10320 | | |
| 10321 | | > select subtract #20 |
| 10322 | | |
| 10323 | | Nothing selected |
| 10324 | | |
| 10325 | | > show #13 models |
| 10326 | | |
| 10327 | | > hide #13 models |
| 10328 | | |
| 10329 | | > hide #!20 models |
| 10330 | | |
| 10331 | | > show #!1 models |
| 10332 | | |
| 10333 | | > volume #1 level 0.01004 |
| 10334 | | |
| 10335 | | > hide #!18 models |
| 10336 | | |
| 10337 | | > show #!18 models |
| 10338 | | |
| 10339 | | > show #13 models |
| 10340 | | |
| 10341 | | > hide #13 models |
| 10342 | | |
| 10343 | | > hide #!1 models |
| 10344 | | |
| 10345 | | > show #!1 models |
| 10346 | | |
| 10347 | | > hide #!1 models |
| 10348 | | |
| 10349 | | > hide #!18 models |
| 10350 | | |
| 10351 | | > show #!18 models |
| 10352 | | |
| 10353 | | > show #!2 models |
| 10354 | | |
| 10355 | | > show #13 models |
| 10356 | | |
| 10357 | | > show #8 models |
| 10358 | | |
| 10359 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and |
| 10360 | | > resources/Processing/COPI-Golph_GT/Linkage_2_fitting_Golph_AF_RT.cxs" |
| 10361 | | |
| 10362 | | > hide #!18 models |
| 10363 | | |
| 10364 | | > hide #13 models |
| 10365 | | |
| 10366 | | > hide #8 models |
| 10367 | | |
| 10368 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and |
| 10369 | | > resources/Processing/COPI-Golph_GT/COPI_golph_linkage3_postprocess.mrc" |
| 10370 | | |
| 10371 | | Opened COPI_golph_linkage3_postprocess.mrc as #21, grid size 160,160,160, |
| 10372 | | pixel 3.4, shown at level 0.731, step 1, values float32 |
| 10373 | | |
| 10374 | | > select add #21 |
| 10375 | | |
| 10376 | | 2 models selected |
| 10377 | | |
| 10378 | | > volume #21 level 0.6806 |
| 10379 | | |
| 10380 | | > color #21 #898bb8ff models |
| 10381 | | |
| 10382 | | > color #21 #adb1b8ff models |
| 10383 | | |
| 10384 | | > color #21 #adb1b8b6 models |
| 10385 | | |
| 10386 | | > color #21 #adb1b8b8 models |
| 10387 | | |
| 10388 | | > view matrix models #21,1,0,0,-69.887,0,1,0,-146.97,0,0,1,106.13 |
| 10389 | | |
| 10390 | | > view matrix models #21,1,0,0,69.289,0,1,0,-255.81,0,0,1,-21.636 |
| 10391 | | |
| 10392 | | > show #3 models |
| 10393 | | |
| 10394 | | > view matrix models #21,1,0,0,-8.9068,0,1,0,-218.78,0,0,1,51.499 |
| 10395 | | |
| 10396 | | > view matrix models #21,1,0,0,-249.44,0,1,0,116.86,0,0,1,196.35 |
| 10397 | | |
| 10398 | | > view matrix models #21,1,0,0,-118.83,0,1,0,15.086,0,0,1,161.26 |
| 10399 | | |
| 10400 | | > view matrix models #21,1,0,0,-100.59,0,1,0,1.8365,0,0,1,14.26 |
| 10401 | | |
| 10402 | | > show #8 models |
| 10403 | | |
| 10404 | | > view matrix models #21,1,0,0,-325.05,0,1,0,-185.92,0,0,1,143.76 |
| 10405 | | |
| 10406 | | > view matrix models #21,1,0,0,-157.21,0,1,0,-165.58,0,0,1,121.51 |
| 10407 | | |
| 10408 | | > view matrix models #21,1,0,0,306.48,0,1,0,-96.47,0,0,1,55.209 |
| 10409 | | |
| 10410 | | > show #6 models |
| 10411 | | |
| 10412 | | > view matrix models #21,1,0,0,-106.18,0,1,0,-309.4,0,0,1,38.441 |
| 10413 | | |
| 10414 | | > view matrix models #21,1,0,0,62.295,0,1,0,-258.65,0,0,1,47.459 |
| 10415 | | |
| 10416 | | > ui mousemode right "rotate selected models" |
| 10417 | | |
| 10418 | | > view matrix models |
| 10419 | | > #21,0.89043,-0.015893,-0.45484,225.84,0.21015,0.90083,0.37992,-396.93,0.4037,-0.43388,0.80547,111.02 |
| 10420 | | |
| 10421 | | > view matrix models |
| 10422 | | > #21,0.95587,-0.0064312,-0.29372,159.62,0.13825,0.892,0.43038,-389.32,0.25923,-0.45199,0.85352,141.6 |
| 10423 | | |
| 10424 | | > view matrix models |
| 10425 | | > #21,0.95548,-0.032907,-0.29323,166.79,0.12768,0.94202,0.31033,-365.9,0.26601,-0.33395,0.90428,93.187 |
| 10426 | | |
| 10427 | | > ui mousemode right "translate selected models" |
| 10428 | | |
| 10429 | | > view matrix models |
| 10430 | | > #21,0.95548,-0.032907,-0.29323,119.6,0.12768,0.94202,0.31033,-206.92,0.26601,-0.33395,0.90428,40.217 |
| 10431 | | |
| 10432 | | > view matrix models |
| 10433 | | > #21,0.95548,-0.032907,-0.29323,149.13,0.12768,0.94202,0.31033,-368.55,0.26601,-0.33395,0.90428,80.718 |
| 10434 | | |
| 10435 | | > ui mousemode right "rotate selected models" |
| 10436 | | |
| 10437 | | > view matrix models |
| 10438 | | > #21,0.9092,0.00026127,-0.41635,187.73,0.1849,0.89572,0.40434,-398.27,0.37304,-0.44462,0.81434,107.29 |
| 10439 | | |
| 10440 | | > view matrix models |
| 10441 | | > #21,0.83643,0.54213,0.080568,-81.317,-0.51647,0.73041,0.44695,-174.53,0.18346,-0.41545,0.89092,129.17 |
| 10442 | | |
| 10443 | | > view matrix models |
| 10444 | | > #21,0.66015,0.7445,0.099557,-93.827,-0.71972,0.58903,0.3675,-58.129,0.21496,-0.31426,0.92468,83.446 |
| 10445 | | |
| 10446 | | > view matrix models |
| 10447 | | > #21,0.65675,0.64082,-0.39753,76.738,-0.65717,0.7449,0.11509,-45.764,0.36987,0.18566,0.91034,-90.693 |
| 10448 | | |
| 10449 | | > view matrix models |
| 10450 | | > #21,0.55552,0.79996,0.22686,-116.66,-0.65365,0.58877,-0.4755,163.79,-0.51395,0.11586,0.84996,186.01 |
| 10451 | | |
| 10452 | | > view matrix models |
| 10453 | | > #21,0.42233,0.88824,-0.18073,11.515,-0.77453,0.4572,0.43711,-27.136,0.47088,-0.044626,0.88107,-47.178 |
| 10454 | | |
| 10455 | | > ui mousemode right "translate selected models" |
| 10456 | | |
| 10457 | | > view matrix models |
| 10458 | | > #21,0.42233,0.88824,-0.18073,15.921,-0.77453,0.4572,0.43711,107.61,0.47088,-0.044626,0.88107,-95.497 |
| 10459 | | |
| 10460 | | > ui mousemode right "rotate selected models" |
| 10461 | | |
| 10462 | | > view matrix models |
| 10463 | | > #21,-0.051729,0.72322,-0.68868,334.36,-0.99462,0.0247,0.10065,380.94,0.0898,0.69018,0.71804,-145.39 |
| 10464 | | |
| 10465 | | > view matrix models |
| 10466 | | > #21,0.71972,0.6719,0.17481,-107.28,-0.64086,0.73979,-0.20497,176.99,-0.26704,0.03549,0.96303,60.203 |
| 10467 | | |
| 10468 | | > view matrix models |
| 10469 | | > #21,0.67464,0.10107,0.73119,-97.944,-0.52359,0.76376,0.37753,-27.168,-0.5203,-0.63754,0.56818,424.64 |
| 10470 | | |
| 10471 | | > view matrix models |
| 10472 | | > #21,0.63817,0.076934,0.76604,-91.364,-0.55017,0.7416,0.38386,-15.703,-0.53856,-0.66642,0.51559,452.43 |
| 10473 | | |
| 10474 | | > view matrix models |
| 10475 | | > #21,0.8156,0.33852,0.46925,-126.41,-0.45267,0.87844,0.15308,-13.826,-0.36039,-0.33727,0.86969,213.61 |
| 10476 | | |
| 10477 | | > ui mousemode right "rotate selected models" |
| 10478 | | |
| 10479 | | > view matrix models |
| 10480 | | > #21,0.96399,-0.2457,0.10178,96.753,0.21555,0.94601,0.24208,-239.39,-0.15577,-0.21143,0.9649,96.59 |
| 10481 | | |
| 10482 | | > view matrix models |
| 10483 | | > #21,0.88787,0.44868,0.10179,-71.52,-0.42413,0.88395,-0.19685,76.462,-0.1783,0.1316,0.97513,6.4523 |
| 10484 | | |
| 10485 | | > view matrix models |
| 10486 | | > #21,0.87685,0.46529,-0.12098,-9.6609,-0.48036,0.8582,-0.18097,94.255,0.019623,0.2168,0.97602,-70.851 |
| 10487 | | |
| 10488 | | > view matrix models |
| 10489 | | > #21,0.84503,0.45156,-0.2864,49.798,-0.44088,0.89144,0.10467,-6.8007,0.30257,0.037816,0.95238,-92.417 |
| 10490 | | |
| 10491 | | > view matrix models |
| 10492 | | > #21,0.8763,0.4523,-0.16591,6.8068,-0.44715,0.89176,0.06938,4.8586,0.17933,0.01339,0.9837,-61.141 |
| 10493 | | |
| 10494 | | > ui mousemode right "translate selected models" |
| 10495 | | |
| 10496 | | > view matrix models |
| 10497 | | > #21,0.8763,0.4523,-0.16591,7.7609,-0.44715,0.89176,0.06938,33.698,0.17933,0.01339,0.9837,-63.046 |
| 10498 | | |
| 10499 | | > view matrix models |
| 10500 | | > #21,0.8763,0.4523,-0.16591,11.927,-0.44715,0.89176,0.06938,0.32418,0.17933,0.01339,0.9837,-59.659 |
| 10501 | | |
| 10502 | | > ui mousemode right "rotate selected models" |
| 10503 | | |
| 10504 | | > view matrix models |
| 10505 | | > #21,0.87736,0.47719,-0.050317,-28.021,-0.45683,0.86277,0.21663,-31.044,0.14679,-0.16708,0.97496,0.80283 |
| 10506 | | |
| 10507 | | > view matrix models |
| 10508 | | > #21,0.89949,0.22051,-0.37721,128.81,-0.43606,0.50769,-0.74304,332.97,0.027653,0.83284,0.55282,-118.82 |
| 10509 | | |
| 10510 | | > view matrix models |
| 10511 | | > #21,0.6141,0.77163,-0.16572,-3.682,-0.78752,0.61291,-0.06443,206.92,0.051854,0.17007,0.98407,-67.713 |
| 10512 | | |
| 10513 | | > show #!20 models |
| 10514 | | |
| 10515 | | > hide #!20 models |
| 10516 | | |
| 10517 | | > show #14 models |
| 10518 | | |
| 10519 | | > hide #14 models |
| 10520 | | |
| 10521 | | > show #14 models |
| 10522 | | |
| 10523 | | > view matrix models |
| 10524 | | > #21,0.62161,0.77097,-0.1386,-13.258,-0.78327,0.61388,-0.098198,215.1,0.0093763,0.1696,0.98547,-56.424 |
| 10525 | | |
| 10526 | | > view matrix models |
| 10527 | | > #21,0.61443,0.78897,-0.00059291,-55.467,-0.7809,0.60803,-0.14316,228.84,-0.11259,0.088427,0.9897,-2.3412 |
| 10528 | | |
| 10529 | | > view matrix models |
| 10530 | | > #21,0.61932,0.77942,-0.094591,-27.456,-0.78481,0.61105,-0.10338,217.77,-0.022773,0.13826,0.99013,-40.471 |
| 10531 | | |
| 10532 | | > view matrix models |
| 10533 | | > #21,0.61178,0.7792,-0.13625,-13.493,-0.7897,0.6116,-0.04815,203.23,0.045815,0.13706,0.9895,-58.631 |
| 10534 | | |
| 10535 | | > ui mousemode right "translate selected models" |
| 10536 | | |
| 10537 | | > view matrix models |
| 10538 | | > #21,0.61178,0.7792,-0.13625,-3.561,-0.7897,0.6116,-0.04815,282.63,0.045815,0.13706,0.9895,-62.238 |
| 10539 | | |
| 10540 | | > view matrix models |
| 10541 | | > #21,0.61178,0.7792,-0.13625,1.5298,-0.7897,0.6116,-0.04815,286.54,0.045815,0.13706,0.9895,-68.99 |
| 10542 | | |
| 10543 | | > fitmap #21 inMap #2 |
| 10544 | | |
| 10545 | | Fit map COPI_golph_linkage3_postprocess.mrc in map emdb 3720 using 58728 |
| 10546 | | points |
| 10547 | | correlation = 0.1315, correlation about mean = 0.07984, overlap = 363.5 |
| 10548 | | steps = 352, shift = 41.4, angle = 14.7 degrees |
| 10549 | | |
| 10550 | | Position of COPI_golph_linkage3_postprocess.mrc (#21) relative to emdb 3720 |
| 10551 | | (#2) coordinates: |
| 10552 | | Matrix rotation and translation |
| 10553 | | 0.16511059 -0.95225260 0.25681409 278.85415999 |
| 10554 | | 0.97917838 0.18944830 0.07293179 -166.73320724 |
| 10555 | | -0.11810248 0.23942499 0.96370508 -284.94197250 |
| 10556 | | Axis 0.08432108 0.18987784 0.97818013 |
| 10557 | | Axis point 219.08199993 126.15783603 0.00000000 |
| 10558 | | Rotation angle (degrees) 80.84348286 |
| 10559 | | Shift along axis -286.87023128 |
| 10560 | | |
| 10561 | | |
| 10562 | | > select subtract #21 |
| 10563 | | |
| 10564 | | Nothing selected |
| 10565 | | |
| 10566 | | > select add #21 |
| 10567 | | |
| 10568 | | 2 models selected |
| 10569 | | |
| 10570 | | > select subtract #21 |
| 10571 | | |
| 10572 | | Nothing selected |
| 10573 | | |
| 10574 | | > select add #21 |
| 10575 | | |
| 10576 | | 2 models selected |
| 10577 | | |
| 10578 | | > view matrix models |
| 10579 | | > #21,0.74086,0.66295,-0.10782,2.8904,-0.6653,0.70229,-0.2533,307.02,-0.092205,0.25939,0.96136,-60.661 |
| 10580 | | |
| 10581 | | > view matrix models |
| 10582 | | > #21,0.74086,0.66295,-0.10782,41.238,-0.6653,0.70229,-0.2533,295.03,-0.092205,0.25939,0.96136,-61.116 |
| 10583 | | |
| 10584 | | > hide #14 models |
| 10585 | | |
| 10586 | | > hide #3 models |
| 10587 | | |
| 10588 | | > ui mousemode right "rotate selected models" |
| 10589 | | |
| 10590 | | > view matrix models |
| 10591 | | > #21,0.64157,0.66046,-0.3901,149.25,-0.76644,0.53146,-0.36072,399.61,-0.030916,0.53041,0.84717,-119.07 |
| 10592 | | |
| 10593 | | > view matrix models |
| 10594 | | > #21,0.62605,0.7716,-0.11263,44.28,-0.75233,0.55969,-0.34749,384.32,-0.20509,0.30228,0.93089,-33.401 |
| 10595 | | |
| 10596 | | > ui mousemode right "translate selected models" |
| 10597 | | |
| 10598 | | > view matrix models |
| 10599 | | > #21,0.62605,0.7716,-0.11263,159.7,-0.75233,0.55969,-0.34749,178.66,-0.20509,0.30228,0.93089,-67.969 |
| 10600 | | |
| 10601 | | > view matrix models |
| 10602 | | > #21,0.62605,0.7716,-0.11263,96.612,-0.75233,0.55969,-0.34749,145.01,-0.20509,0.30228,0.93089,-66.07 |
| 10603 | | |
| 10604 | | > ui mousemode right "rotate selected models" |
| 10605 | | |
| 10606 | | > view matrix models |
| 10607 | | > #21,0.61094,0.58951,-0.52842,268.57,-0.72762,0.1551,-0.66822,339.65,-0.31196,0.79273,0.5237,-54.62 |
| 10608 | | |
| 10609 | | > view matrix models |
| 10610 | | > #21,0.67108,-0.25232,0.69712,132.66,0.74045,0.27512,-0.61322,-108.19,-0.037062,0.92771,0.37146,-122.86 |
| 10611 | | |
| 10612 | | > view matrix models |
| 10613 | | > #21,0.6657,-0.74269,0.072507,445.28,0.70491,0.59399,-0.38766,-249.48,0.24484,0.30917,0.91895,-186.99 |
| 10614 | | |
| 10615 | | > view matrix models |
| 10616 | | > #21,0.56881,-0.75008,-0.3374,590.28,0.70397,0.65614,-0.27188,-299.08,0.42531,-0.082869,0.90125,-124.37 |
| 10617 | | |
| 10618 | | > view matrix models |
| 10619 | | > #21,0.7031,-0.70799,-0.066332,465.16,0.54326,0.59501,-0.59231,-147.54,0.45881,0.38042,0.80298,-231.62 |
| 10620 | | |
| 10621 | | > view matrix models |
| 10622 | | > #21,0.69505,-0.58596,0.41661,296.74,0.66233,0.74727,-0.053969,-374.54,-0.2797,0.31345,0.90748,-42.142 |
| 10623 | | |
| 10624 | | > view matrix models |
| 10625 | | > #21,0.52953,0.81621,0.23108,12.954,-0.67392,0.57022,-0.46976,155.6,-0.51519,0.093022,0.85201,97.72 |
| 10626 | | |
| 10627 | | > view matrix models |
| 10628 | | > #21,0.87105,0.29814,0.39037,15.693,-0.16527,0.92628,-0.33866,-117.04,-0.46256,0.23047,0.85611,44.821 |
| 10629 | | |
| 10630 | | > view matrix models |
| 10631 | | > #21,0.96132,0.26759,0.065255,91.934,-0.26218,0.96162,-0.080898,-173.61,-0.084399,0.06066,0.99458,-51.273 |
| 10632 | | |
| 10633 | | > view matrix models |
| 10634 | | > #21,0.91601,0.39302,0.080397,65.82,-0.38782,0.91883,-0.073065,-130,-0.10259,0.035748,0.99408,-39.4 |
| 10635 | | |
| 10636 | | > view matrix models |
| 10637 | | > #21,0.91503,0.39345,0.088973,63.53,-0.38641,0.91825,-0.08662,-126.37,-0.11578,0.044879,0.99226,-37.777 |
| 10638 | | |
| 10639 | | > ui mousemode right "translate selected models" |
| 10640 | | |
| 10641 | | > view matrix models |
| 10642 | | > #21,0.91503,0.39345,0.088973,-19.059,-0.38641,0.91825,-0.08662,121.8,-0.11578,0.044879,0.99226,-21.386 |
| 10643 | | |
| 10644 | | > view matrix models |
| 10645 | | > #21,0.91503,0.39345,0.088973,-47.686,-0.38641,0.91825,-0.08662,118.33,-0.11578,0.044879,0.99226,-1.0662 |
| 10646 | | |
| 10647 | | > view matrix models |
| 10648 | | > #21,0.91503,0.39345,0.088973,-64.92,-0.38641,0.91825,-0.08662,106.11,-0.11578,0.044879,0.99226,18.924 |
| 10649 | | |
| 10650 | | > fitmap #21 inMap #2 |
| 10651 | | |
| 10652 | | Fit map COPI_golph_linkage3_postprocess.mrc in map emdb 3720 using 58728 |
| 10653 | | points |
| 10654 | | correlation = 0.3068, correlation about mean = 0.05618, overlap = 925.7 |
| 10655 | | steps = 536, shift = 63.9, angle = 28.5 degrees |
| 10656 | | |
| 10657 | | Position of COPI_golph_linkage3_postprocess.mrc (#21) relative to emdb 3720 |
| 10658 | | (#2) coordinates: |
| 10659 | | Matrix rotation and translation |
| 10660 | | -0.32253487 -0.83356760 0.44848222 337.87463973 |
| 10661 | | 0.94497750 -0.25619477 0.20342508 -53.16974935 |
| 10662 | | -0.05466975 0.48941729 0.87033437 -358.85998503 |
| 10663 | | Axis 0.15290911 0.26901615 0.95092014 |
| 10664 | | Axis point 187.41204275 163.73321980 0.00000000 |
| 10665 | | Rotation angle (degrees) 110.74427733 |
| 10666 | | Shift along axis -303.88659719 |
| 10667 | | |
| 10668 | | |
| 10669 | | > hide #!2 models |
| 10670 | | |
| 10671 | | > show #!2 models |
| 10672 | | |
| 10673 | | > hide #!2 models |
| 10674 | | |
| 10675 | | > select subtract #21 |
| 10676 | | |
| 10677 | | Nothing selected |
| 10678 | | |
| 10679 | | > volume #21 level 0.6057 |
| 10680 | | |
| 10681 | | > show #3 models |
| 10682 | | |
| 10683 | | > show #4 models |
| 10684 | | |
| 10685 | | > hide #4 models |
| 10686 | | |
| 10687 | | > show #5 models |
| 10688 | | |
| 10689 | | > show #7 models |
| 10690 | | |
| 10691 | | > show #!9 models |
| 10692 | | |
| 10693 | | > hide #!21 models |
| 10694 | | |
| 10695 | | > hide #!9 models |
| 10696 | | |
| 10697 | | > hide #8 models |
| 10698 | | |
| 10699 | | > hide #7 models |
| 10700 | | |
| 10701 | | > hide #6 models |
| 10702 | | |
| 10703 | | > hide #5 models |
| 10704 | | |
| 10705 | | > hide #3 models |
| 10706 | | |
| 10707 | | > show #!1 models |
| 10708 | | |
| 10709 | | > show #!2 models |
| 10710 | | |
| 10711 | | > hide #!2 models |
| 10712 | | |
| 10713 | | > hide #!1 models |
| 10714 | | |
| 10715 | | > show #!2 models |
| 10716 | | |
| 10717 | | > show #!15 models |
| 10718 | | |
| 10719 | | > show #!16 models |
| 10720 | | |
| 10721 | | > show #!17 models |
| 10722 | | |
| 10723 | | > show #13 models |
| 10724 | | |
| 10725 | | > hide #!17 models |
| 10726 | | |
| 10727 | | > hide #!16 models |
| 10728 | | |
| 10729 | | > hide #13 models |
| 10730 | | |
| 10731 | | > hide #!2 models |
| 10732 | | |
| 10733 | | > show #!17 models |
| 10734 | | |
| 10735 | | > volume #15 level 0.398 |
| 10736 | | |
| 10737 | | > hide #!17 models |
| 10738 | | |
| 10739 | | > volume #15 level 0.2746 |
| 10740 | | |
| 10741 | | > show #!17 models |
| 10742 | | |
| 10743 | | > hide #!15 models |
| 10744 | | |
| 10745 | | > show #!15 models |
| 10746 | | |
| 10747 | | > volume #15 level 0.3678 |
| 10748 | | |
| 10749 | | > show #3 models |
| 10750 | | |
| 10751 | | > show #4 models |
| 10752 | | |
| 10753 | | > hide #4 models |
| 10754 | | |
| 10755 | | > show #5 models |
| 10756 | | |
| 10757 | | > show #6 models |
| 10758 | | |
| 10759 | | > show #7 models |
| 10760 | | |
| 10761 | | > show #8 models |
| 10762 | | |
| 10763 | | > show #!9 models |
| 10764 | | |
| 10765 | | > show #11 models |
| 10766 | | |
| 10767 | | > show #13 models |
| 10768 | | |
| 10769 | | > show #14 models |
| 10770 | | |
| 10771 | | > hide #!17 models |
| 10772 | | |
| 10773 | | > show #!2 models |
| 10774 | | |
| 10775 | | > hide #!2 models |
| 10776 | | |
| 10777 | | > hide #!15 models |
| 10778 | | |
| 10779 | | > hide #3 models |
| 10780 | | |
| 10781 | | > show #3 models |
| 10782 | | |
| 10783 | | > hide #3 models |
| 10784 | | |
| 10785 | | > show #3 models |
| 10786 | | |
| 10787 | | > show #!18 models |
| 10788 | | |
| 10789 | | > show #!2 models |
| 10790 | | |
| 10791 | | > hide #!2 models |
| 10792 | | |
| 10793 | | > show #!20 models |
| 10794 | | |
| 10795 | | > hide #!18 models |
| 10796 | | |
| 10797 | | > show #!18 models |
| 10798 | | |
| 10799 | | > hide #!20 models |
| 10800 | | |
| 10801 | | > show #!20 models |
| 10802 | | |
| 10803 | | > hide #!20 models |
| 10804 | | |
| 10805 | | > show #!20 models |
| 10806 | | |
| 10807 | | > hide #!18 models |
| 10808 | | |
| 10809 | | > show #!18 models |
| 10810 | | |
| 10811 | | > hide #!18 models |
| 10812 | | |
| 10813 | | > hide #!20 models |
| 10814 | | |
| 10815 | | > show #!21 models |
| 10816 | | |
| 10817 | | > show #!2 models |
| 10818 | | |
| 10819 | | > hide #!21 models |
| 10820 | | |
| 10821 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and |
| 10822 | | > resources/Processing/COPI-Golph_GT/COPI_golph_linkage4_postprocess.mrc" |
| 10823 | | |
| 10824 | | Opened COPI_golph_linkage4_postprocess.mrc as #22, grid size 160,160,160, |
| 10825 | | pixel 3.4, shown at level 0.633, step 1, values float32 |
| 10826 | | |
| 10827 | | > volume #22 level 0.4998 |
| 10828 | | |
| 10829 | | > select add #22 |
| 10830 | | |
| 10831 | | 2 models selected |
| 10832 | | |
| 10833 | | > view matrix models #22,1,0,0,86.864,0,1,0,-163.53,0,0,1,-69.833 |
| 10834 | | |
| 10835 | | > color #22 #e0ecffff models |
| 10836 | | |
| 10837 | | > color #22 #e9f5ffff models |
| 10838 | | |
| 10839 | | > color #22 #b6c0c8ff models |
| 10840 | | |
| 10841 | | > color #22 #b6c0c8a8 models |
| 10842 | | |
| 10843 | | > ui mousemode right "rotate selected models" |
| 10844 | | |
| 10845 | | > view matrix models |
| 10846 | | > #22,0.78147,0.50969,0.35989,-100.59,-0.15335,0.71601,-0.68104,160.15,-0.6048,0.47702,0.6377,73.713 |
| 10847 | | |
| 10848 | | > view matrix models |
| 10849 | | > #22,0.60302,0.64176,0.47383,-122.16,-0.25703,0.71861,-0.64617,177.24,-0.75519,0.26786,0.59828,183.56 |
| 10850 | | |
| 10851 | | > ui mousemode right "translate selected models" |
| 10852 | | |
| 10853 | | > view matrix models |
| 10854 | | > #22,0.60302,0.64176,0.47383,-180.56,-0.25703,0.71861,-0.64617,159.86,-0.75519,0.26786,0.59828,231.55 |
| 10855 | | |
| 10856 | | > ui mousemode right "rotate selected models" |
| 10857 | | |
| 10858 | | > view matrix models |
| 10859 | | > #22,0.28964,0.94666,0.14124,-78.437,-0.87363,0.32176,-0.36503,351.72,-0.391,-0.017664,0.92022,113.5 |
| 10860 | | |
| 10861 | | > ui mousemode right "translate selected models" |
| 10862 | | |
| 10863 | | > view matrix models |
| 10864 | | > #22,0.28964,0.94666,0.14124,-122.45,-0.87363,0.32176,-0.36503,500.17,-0.391,-0.017664,0.92022,134.3 |
| 10865 | | |
| 10866 | | > view matrix models |
| 10867 | | > #22,0.28964,0.94666,0.14124,-182.04,-0.87363,0.32176,-0.36503,476.3,-0.391,-0.017664,0.92022,172.38 |
| 10868 | | |
| 10869 | | > view matrix models |
| 10870 | | > #22,0.28964,0.94666,0.14124,-66.429,-0.87363,0.32176,-0.36503,393.2,-0.391,-0.017664,0.92022,104.2 |
| 10871 | | |
| 10872 | | > ui mousemode right "rotate selected models" |
| 10873 | | |
| 10874 | | > view matrix models |
| 10875 | | > #22,-0.020676,0.93533,0.35317,-42.385,-0.88978,0.14387,-0.43312,466.54,-0.45592,-0.3232,0.82926,232.51 |
| 10876 | | |
| 10877 | | > view matrix models |
| 10878 | | > #22,0.22371,0.90492,0.36205,-103.37,-0.97381,0.22303,0.044274,324.54,-0.040683,-0.36247,0.93111,99.469 |
| 10879 | | |
| 10880 | | > view matrix models |
| 10881 | | > #22,-0.3087,0.70623,0.63713,13.335,-0.89783,0.0047913,-0.44032,508.82,-0.31402,-0.70796,0.6326,357.79 |
| 10882 | | |
| 10883 | | > view matrix models |
| 10884 | | > #22,0.026496,0.99882,-0.040736,45.701,-0.99955,0.02704,0.01285,394.43,0.013936,0.040377,0.99909,-45.666 |
| 10885 | | |
| 10886 | | > view matrix models |
| 10887 | | > #22,-0.052732,0.99411,0.094684,27.925,-0.99621,-0.0458,-0.073945,439.44,-0.069173,-0.098224,0.99276,16.677 |
| 10888 | | |
| 10889 | | > ui mousemode right "translate selected models" |
| 10890 | | |
| 10891 | | > view matrix models |
| 10892 | | > #22,-0.052732,0.99411,0.094684,-41.077,-0.99621,-0.0458,-0.073945,493.16,-0.069173,-0.098224,0.99276,57.186 |
| 10893 | | |
| 10894 | | > ui mousemode right "rotate selected models" |
| 10895 | | |
| 10896 | | > view matrix models |
| 10897 | | > #22,-0.14698,0.89014,0.43133,-88.104,-0.98704,-0.16037,-0.005392,501.32,0.064374,-0.42653,0.90218,137.5 |
| 10898 | | |
| 10899 | | > ui mousemode right "translate selected models" |
| 10900 | | |
| 10901 | | > view matrix models |
| 10902 | | > #22,-0.14698,0.89014,0.43133,-83.727,-0.98704,-0.16037,-0.005392,495.71,0.064374,-0.42653,0.90218,133.33 |
| 10903 | | |
| 10904 | | > ui mousemode right "rotate selected models" |
| 10905 | | |
| 10906 | | > view matrix models |
| 10907 | | > #22,-0.20349,0.87067,0.44781,-67.963,-0.91791,-0.010519,-0.39665,553.47,-0.34064,-0.49176,0.80133,291.78 |
| 10908 | | |
| 10909 | | > ui mousemode right "translate selected models" |
| 10910 | | |
| 10911 | | > view matrix models |
| 10912 | | > #22,-0.20349,0.87067,0.44781,-69.471,-0.91791,-0.010519,-0.39665,595.62,-0.34064,-0.49176,0.80133,324.66 |
| 10913 | | |
| 10914 | | > view matrix models |
| 10915 | | > #22,-0.20349,0.87067,0.44781,-58.843,-0.91791,-0.010519,-0.39665,574.5,-0.34064,-0.49176,0.80133,304.63 |
| 10916 | | |
| 10917 | | > ui mousemode right "translate selected models" |
| 10918 | | |
| 10919 | | > view matrix models |
| 10920 | | > #22,-0.20349,0.87067,0.44781,-115.69,-0.91791,-0.010519,-0.39665,427.17,-0.34064,-0.49176,0.80133,333.06 |
| 10921 | | |
| 10922 | | > ui mousemode right "rotate selected models" |
| 10923 | | |
| 10924 | | > view matrix models |
| 10925 | | > #22,-0.14719,0.55024,0.82193,-155.98,-0.98682,-0.025227,-0.15983,378.87,-0.067212,-0.83462,0.5467,428.46 |
| 10926 | | |
| 10927 | | > view matrix models |
| 10928 | | > #22,-0.53052,0.47552,0.70173,4.9543,-0.84215,-0.38997,-0.37242,502.71,0.096558,-0.78854,0.60735,353.05 |
| 10929 | | |
| 10930 | | > view matrix models |
| 10931 | | > #22,-0.6984,0.54898,0.4592,103.49,-0.70756,-0.43304,-0.55842,533.61,-0.10771,-0.71491,0.69087,363.57 |
| 10932 | | |
| 10933 | | > view matrix models |
| 10934 | | > #22,-0.67565,0.6076,0.41751,93.823,-0.71802,-0.41395,-0.55954,531.59,-0.16715,-0.67784,0.71596,362.14 |
| 10935 | | |
| 10936 | | > view matrix models |
| 10937 | | > #22,-0.80567,0.57276,-0.15112,309.47,0.22246,0.056121,-0.97333,271.31,-0.549,-0.8178,-0.17263,771.13 |
| 10938 | | |
| 10939 | | > view matrix models |
| 10940 | | > #22,-0.79633,0.079496,0.59961,216.04,-0.55232,-0.49969,-0.66727,542.15,0.24658,-0.86255,0.44182,382.03 |
| 10941 | | |
| 10942 | | > view matrix models |
| 10943 | | > #22,-0.67539,0.70693,0.21001,128.96,-0.59312,-0.68993,0.41497,280.24,0.43825,0.1557,0.88527,-80.968 |
| 10944 | | |
| 10945 | | > view matrix models |
| 10946 | | > #22,-0.71777,0.65524,-0.23553,288.36,-0.50949,-0.72481,-0.46376,530.76,-0.47459,-0.21287,0.85408,277.69 |
| 10947 | | |
| 10948 | | > view matrix models |
| 10949 | | > #22,-0.95603,0.2816,0.081864,359.89,-0.24094,-0.5951,-0.76668,513.14,-0.16718,-0.7527,0.63679,406.32 |
| 10950 | | |
| 10951 | | > view matrix models |
| 10952 | | > #22,-0.63322,-0.44634,-0.63231,684.79,0.66029,-0.73776,-0.14046,118.4,-0.4038,-0.50645,0.76188,366.12 |
| 10953 | | |
| 10954 | | > view matrix models |
| 10955 | | > #22,-0.90532,-0.34407,-0.249,615.99,0.18442,-0.84658,0.4993,85.715,-0.38259,0.4061,0.82988,91.111 |
| 10956 | | |
| 10957 | | > view matrix models |
| 10958 | | > #22,-0.96419,-0.26357,0.029355,526.52,0.24577,-0.84646,0.47234,77.053,-0.099647,0.46264,0.88093,-16.748 |
| 10959 | | |
| 10960 | | > view matrix models |
| 10961 | | > #22,-0.9526,-0.30268,-0.030562,552.02,0.25997,-0.8621,0.43496,88.669,-0.158,0.4064,0.89993,8.7874 |
| 10962 | | |
| 10963 | | > ui mousemode right "translate selected models" |
| 10964 | | |
| 10965 | | > view matrix models |
| 10966 | | > #22,-0.9526,-0.30268,-0.030562,548.24,0.25997,-0.8621,0.43496,360.71,-0.158,0.4064,0.89993,-35.334 |
| 10967 | | |
| 10968 | | > ui mousemode right "rotate selected models" |
| 10969 | | |
| 10970 | | > view matrix models |
| 10971 | | > #22,-0.99238,-0.098069,-0.074577,516.51,0.065742,-0.93344,0.35266,457.81,-0.1042,0.34507,0.93278,-43.137 |
| 10972 | | |
| 10973 | | > view matrix models |
| 10974 | | > #22,-0.9771,-0.13873,-0.16136,549.49,0.090768,-0.95754,0.27364,481.28,-0.19247,0.25272,0.9482,1.4701 |
| 10975 | | |
| 10976 | | > view matrix models |
| 10977 | | > #22,-0.97138,-0.17322,-0.16255,557.69,0.1406,-0.97081,0.19431,495.13,-0.19147,0.16589,0.96738,19.115 |
| 10978 | | |
| 10979 | | > fitmap #22 inMap #2 |
| 10980 | | |
| 10981 | | Fit map COPI_golph_linkage4_postprocess.mrc in map emdb 3720 using 142370 |
| 10982 | | points |
| 10983 | | correlation = 0.105, correlation about mean = 0.1014, overlap = 418.9 |
| 10984 | | steps = 456, shift = 43.7, angle = 18 degrees |
| 10985 | | |
| 10986 | | Position of COPI_golph_linkage4_postprocess.mrc (#22) relative to emdb 3720 |
| 10987 | | (#2) coordinates: |
| 10988 | | Matrix rotation and translation |
| 10989 | | 0.18065176 0.97553304 -0.12530053 -137.14370480 |
| 10990 | | -0.98279485 0.18402446 0.01578860 200.53879943 |
| 10991 | | 0.03846067 0.12029247 0.99199319 -248.35089122 |
| 10992 | | Axis 0.05310318 -0.08321454 -0.99511577 |
| 10993 | | Axis point 56.64088445 200.30404249 0.00000000 |
| 10994 | | Rotation angle (degrees) 79.72722380 |
| 10995 | | Shift along axis 223.16737748 |
| 10996 | | |
| 10997 | | |
| 10998 | | > fitmap #22 inMap #2 |
| 10999 | | |
| 11000 | | Fit map COPI_golph_linkage4_postprocess.mrc in map emdb 3720 using 142370 |
| 11001 | | points |
| 11002 | | correlation = 0.105, correlation about mean = 0.1014, overlap = 418.9 |
| 11003 | | steps = 84, shift = 0.0353, angle = 0.0059 degrees |
| 11004 | | |
| 11005 | | Position of COPI_golph_linkage4_postprocess.mrc (#22) relative to emdb 3720 |
| 11006 | | (#2) coordinates: |
| 11007 | | Matrix rotation and translation |
| 11008 | | 0.18070188 0.97552181 -0.12531571 -137.12458394 |
| 11009 | | -0.98278214 0.18408535 0.01586940 200.47306053 |
| 11010 | | 0.03854973 0.12029041 0.99198998 -248.35909451 |
| 11011 | | Axis 0.05306161 -0.08326834 -0.99511349 |
| 11012 | | Axis point 56.63115992 200.26664882 0.00000000 |
| 11013 | | Rotation angle (degrees) 79.72408513 |
| 11014 | | Shift along axis 223.17637501 |
| 11015 | | |
| 11016 | | |
| 11017 | | > view matrix models |
| 11018 | | > #22,-0.93936,-0.33863,-0.054164,554.37,0.30927,-0.90475,0.29287,444.96,-0.14818,0.25836,0.95462,-2.8011 |
| 11019 | | |
| 11020 | | > ui mousemode right "translate selected models" |
| 11021 | | |
| 11022 | | > view matrix models |
| 11023 | | > #22,-0.93936,-0.33863,-0.054164,564.72,0.30927,-0.90475,0.29287,411.18,-0.14818,0.25836,0.95462,-19.097 |
| 11024 | | |
| 11025 | | > view matrix models |
| 11026 | | > #22,-0.93936,-0.33863,-0.054164,564.29,0.30927,-0.90475,0.29287,411.41,-0.14818,0.25836,0.95462,-18.8 |
| 11027 | | |
| 11028 | | > ui mousemode right "rotate selected models" |
| 11029 | | |
| 11030 | | > view matrix models |
| 11031 | | > #22,-0.89677,-0.28818,-0.33579,623.47,0.18111,-0.93142,0.31568,446.76,-0.40373,0.22228,0.88746,80.848 |
| 11032 | | |
| 11033 | | > ui mousemode right "translate selected models" |
| 11034 | | |
| 11035 | | > view matrix models |
| 11036 | | > #22,-0.89677,-0.28818,-0.33579,649.35,0.18111,-0.93142,0.31568,428.9,-0.40373,0.22228,0.88746,53.43 |
| 11037 | | |
| 11038 | | > view matrix models |
| 11039 | | > #22,-0.89677,-0.28818,-0.33579,645.65,0.18111,-0.93142,0.31568,429.61,-0.40373,0.22228,0.88746,54.541 |
| 11040 | | |
| 11041 | | > view matrix models |
| 11042 | | > #22,-0.89677,-0.28818,-0.33579,645.51,0.18111,-0.93142,0.31568,435.86,-0.40373,0.22228,0.88746,31.241 |
| 11043 | | |
| 11044 | | > ui mousemode right "rotate selected models" |
| 11045 | | |
| 11046 | | > view matrix models |
| 11047 | | > #22,-0.8453,-0.32892,-0.42105,668.18,0.20796,-0.92845,0.30779,430.11,-0.49216,0.17261,0.85322,79.168 |
| 11048 | | |
| 11049 | | > view matrix models |
| 11050 | | > #22,-0.8556,-0.21068,-0.47282,654.29,0.10806,-0.966,0.23488,489.46,-0.50623,0.14987,0.84927,90.385 |
| 11051 | | |
| 11052 | | > view matrix models |
| 11053 | | > #22,-0.81311,-0.2328,-0.53354,666.97,0.13587,-0.96713,0.21493,488.18,-0.56604,0.10227,0.81801,129.05 |
| 11054 | | |
| 11055 | | > ui mousemode right "translate selected models" |
| 11056 | | |
| 11057 | | > view matrix models |
| 11058 | | > #22,-0.81311,-0.2328,-0.53354,684.47,0.13587,-0.96713,0.21493,485.98,-0.56604,0.10227,0.81801,126.21 |
| 11059 | | |
| 11060 | | > ui mousemode right "rotate selected models" |
| 11061 | | |
| 11062 | | > view matrix models |
| 11063 | | > #22,-0.76856,-0.25226,-0.58794,693.97,0.15952,-0.96552,0.20574,481.85,-0.61957,0.064337,0.7823,161.86 |
| 11064 | | |
| 11065 | | > ui mousemode right "translate selected models" |
| 11066 | | |
| 11067 | | > view matrix models |
| 11068 | | > #22,-0.76856,-0.25226,-0.58794,703.77,0.15952,-0.96552,0.20574,483.66,-0.61957,0.064337,0.7823,160.74 |
| 11069 | | |
| 11070 | | > fitmap #22 inMap #2 |
| 11071 | | |
| 11072 | | Fit map COPI_golph_linkage4_postprocess.mrc in map emdb 3720 using 142370 |
| 11073 | | points |
| 11074 | | correlation = 0.3059, correlation about mean = 0.2109, overlap = 1480 |
| 11075 | | steps = 204, shift = 13.8, angle = 5.22 degrees |
| 11076 | | |
| 11077 | | Position of COPI_golph_linkage4_postprocess.mrc (#22) relative to emdb 3720 |
| 11078 | | (#2) coordinates: |
| 11079 | | Matrix rotation and translation |
| 11080 | | 0.28958463 0.93486676 0.20534089 -256.62492522 |
| 11081 | | -0.76616902 0.35499199 -0.53569181 321.19087280 |
| 11082 | | -0.57369484 -0.00219771 0.81906617 -72.53866158 |
| 11083 | | Axis 0.27421718 0.40042613 -0.87433624 |
| 11084 | | Axis point 57.62625816 353.98226828 0.00000000 |
| 11085 | | Rotation angle (degrees) 76.59567126 |
| 11086 | | Shift along axis 121.66543499 |
| 11087 | | |
| 11088 | | |
| 11089 | | > fitmap #22 inMap #2 |
| 11090 | | |
| 11091 | | Fit map COPI_golph_linkage4_postprocess.mrc in map emdb 3720 using 142370 |
| 11092 | | points |
| 11093 | | correlation = 0.3059, correlation about mean = 0.2109, overlap = 1480 |
| 11094 | | steps = 88, shift = 0.0174, angle = 0.00731 degrees |
| 11095 | | |
| 11096 | | Position of COPI_golph_linkage4_postprocess.mrc (#22) relative to emdb 3720 |
| 11097 | | (#2) coordinates: |
| 11098 | | Matrix rotation and translation |
| 11099 | | 0.28964240 0.93485647 0.20530625 -256.62582679 |
| 11100 | | -0.76622235 0.35501920 -0.53559749 321.16894392 |
| 11101 | | -0.57359444 -0.00217850 0.81913654 -72.57595607 |
| 11102 | | Axis 0.27418379 0.40036434 -0.87437501 |
| 11103 | | Axis point 57.61447724 353.97470394 0.00000000 |
| 11104 | | Rotation angle (degrees) 76.59109653 |
| 11105 | | Shift along axis 121.68055268 |
| 11106 | | |
| 11107 | | |
| 11108 | | > fitmap #22 inMap #2 |
| 11109 | | |
| 11110 | | Fit map COPI_golph_linkage4_postprocess.mrc in map emdb 3720 using 142370 |
| 11111 | | points |
| 11112 | | correlation = 0.3059, correlation about mean = 0.2109, overlap = 1480 |
| 11113 | | steps = 100, shift = 0.00774, angle = 0.00167 degrees |
| 11114 | | |
| 11115 | | Position of COPI_golph_linkage4_postprocess.mrc (#22) relative to emdb 3720 |
| 11116 | | (#2) coordinates: |
| 11117 | | Matrix rotation and translation |
| 11118 | | 0.28966773 0.93485155 0.20529292 -256.62196414 |
| 11119 | | -0.76621992 0.35503229 -0.53559230 321.16811315 |
| 11120 | | -0.57358491 -0.00215572 0.81914327 -72.58416307 |
| 11121 | | Axis 0.27419434 0.40035480 -0.87437606 |
| 11122 | | Axis point 57.61876662 353.97615488 0.00000000 |
| 11123 | | Rotation angle (degrees) 76.58976647 |
| 11124 | | Shift along axis 121.68275949 |
| 11125 | | |
| 11126 | | |
| 11127 | | > view matrix models |
| 11128 | | > #22,-0.78276,-0.20228,-0.58853,689.39,0.16549,-0.97931,0.11649,525.29,-0.59992,-0.0062104,0.80004,164.24 |
| 11129 | | |
| 11130 | | > fitmap #22 inMap #2 |
| 11131 | | |
| 11132 | | Fit map COPI_golph_linkage4_postprocess.mrc in map emdb 3720 using 142370 |
| 11133 | | points |
| 11134 | | correlation = 0.3059, correlation about mean = 0.2109, overlap = 1480 |
| 11135 | | steps = 184, shift = 0.712, angle = 0.00605 degrees |
| 11136 | | |
| 11137 | | Position of COPI_golph_linkage4_postprocess.mrc (#22) relative to emdb 3720 |
| 11138 | | (#2) coordinates: |
| 11139 | | Matrix rotation and translation |
| 11140 | | 0.28964597 0.93484993 0.20533098 -256.64138080 |
| 11141 | | -0.76616354 0.35503650 -0.53567015 321.20226277 |
| 11142 | | -0.57367120 -0.00216241 0.81908282 -72.54553467 |
| 11143 | | Axis 0.27422830 0.40041489 -0.87433789 |
| 11144 | | Axis point 57.63823332 354.01292382 0.00000000 |
| 11145 | | Rotation angle (degrees) 76.59206352 |
| 11146 | | Shift along axis 121.66514833 |
| 11147 | | |
| 11148 | | |
| 11149 | | > fitmap #22 inMap #2 |
| 11150 | | |
| 11151 | | Fit map COPI_golph_linkage4_postprocess.mrc in map emdb 3720 using 142370 |
| 11152 | | points |
| 11153 | | correlation = 0.3059, correlation about mean = 0.2109, overlap = 1480 |
| 11154 | | steps = 148, shift = 0.0325, angle = 0.00987 degrees |
| 11155 | | |
| 11156 | | Position of COPI_golph_linkage4_postprocess.mrc (#22) relative to emdb 3720 |
| 11157 | | (#2) coordinates: |
| 11158 | | Matrix rotation and translation |
| 11159 | | 0.28961107 0.93485553 0.20535473 -256.63781807 |
| 11160 | | -0.76607236 0.35502191 -0.53581021 321.21240562 |
| 11161 | | -0.57381057 -0.00214001 0.81898525 -72.51270302 |
| 11162 | | Axis 0.27430686 0.40049152 -0.87427815 |
| 11163 | | Axis point 57.64670127 354.01889608 0.00000000 |
| 11164 | | Rotation angle (degrees) 76.59639446 |
| 11165 | | Shift along axis 121.64160182 |
| 11166 | | |
| 11167 | | |
| 11168 | | > select subtract #22 |
| 11169 | | |
| 11170 | | Nothing selected |
| 11171 | | |
| 11172 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and |
| 11173 | | > resources/Processing/COPI-Golph_GT/Linkage_4_fitting_Golph_AF_RT.cxs" |
| 11174 | | |
| 11175 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and |
| 11176 | | > resources/Processing/References/emd_2989_2015_linkage4.map" |
| 11177 | | |
| 11178 | | Opened emd_2989_2015_linkage4.map as #23, grid size 200,200,200, pixel 2.02, |
| 11179 | | shown at level 3.51, step 1, values float32 |
| 11180 | | |
| 11181 | | > select add #23 |
| 11182 | | |
| 11183 | | 2 models selected |
| 11184 | | |
| 11185 | | > hide #14 models |
| 11186 | | |
| 11187 | | > hide #13 models |
| 11188 | | |
| 11189 | | > hide #11 models |
| 11190 | | |
| 11191 | | > hide #!9 models |
| 11192 | | |
| 11193 | | > hide #8 models |
| 11194 | | |
| 11195 | | > hide #7 models |
| 11196 | | |
| 11197 | | > hide #6 models |
| 11198 | | |
| 11199 | | > hide #5 models |
| 11200 | | |
| 11201 | | > hide #3 models |
| 11202 | | |
| 11203 | | > hide #!2 models |
| 11204 | | |
| 11205 | | > volume #23 level 1.736 |
| 11206 | | |
| 11207 | | > view matrix models #23,1,0,0,295.97,0,1,0,347.81,0,0,1,255.97 |
| 11208 | | |
| 11209 | | > view matrix models #23,1,0,0,252.37,0,1,0,338.98,0,0,1,288.4 |
| 11210 | | |
| 11211 | | > ui mousemode right "rotate selected models" |
| 11212 | | |
| 11213 | | > view matrix models |
| 11214 | | > #23,-0.34072,0.91035,-0.23488,246.73,-0.9102,-0.38198,-0.16012,331.16,-0.23548,0.15924,0.95875,287.41 |
| 11215 | | |
| 11216 | | > view matrix models |
| 11217 | | > #23,-0.90118,0.19951,-0.3848,241.1,-0.34473,-0.86806,0.35727,342.26,-0.26275,0.45462,0.85105,285.65 |
| 11218 | | |
| 11219 | | > view matrix models |
| 11220 | | > #23,-0.85105,0.18622,-0.49095,238.9,-0.45999,-0.7153,0.52607,345.96,-0.25321,0.67355,0.69442,282.76 |
| 11221 | | |
| 11222 | | > view matrix models |
| 11223 | | > #23,-0.94655,-0.003175,-0.32253,241.94,-0.056235,-0.98301,0.17471,338.66,-0.31761,0.18351,0.93029,286.7 |
| 11224 | | |
| 11225 | | > view matrix models |
| 11226 | | > #23,-0.80832,0.00038823,-0.58875,236.52,-0.12002,-0.97911,0.16414,338.33,-0.57638,0.20334,0.79148,283.31 |
| 11227 | | |
| 11228 | | > view matrix models |
| 11229 | | > #23,-0.93595,0.069976,-0.34511,241.63,-0.11716,-0.9861,0.11781,337.33,-0.33207,0.1507,0.93114,286.63 |
| 11230 | | |
| 11231 | | > view matrix models |
| 11232 | | > #23,-0.92252,-0.0074895,-0.38588,240.63,-0.12049,-0.94425,0.30639,341.43,-0.36666,0.32914,0.87019,285.62 |
| 11233 | | |
| 11234 | | > view matrix models |
| 11235 | | > #23,-0.83624,0.18925,-0.51467,238.43,-0.076264,-0.96958,-0.2326,329.96,-0.54303,-0.15526,0.82524,283.37 |
| 11236 | | |
| 11237 | | > view matrix models |
| 11238 | | > #23,-0.88583,0.03525,-0.46266,239.14,-0.093997,-0.99007,0.10454,337.08,-0.45438,0.13609,0.88035,285.29 |
| 11239 | | |
| 11240 | | > view matrix models |
| 11241 | | > #23,-0.79009,-0.25551,-0.5572,236.72,0.21743,-0.9667,0.13498,338.35,-0.57313,-0.014509,0.81933,283.47 |
| 11242 | | |
| 11243 | | > fitmap #23 inMap #22 |
| 11244 | | |
| 11245 | | Fit map emd_2989_2015_linkage4.map in map COPI_golph_linkage4_postprocess.mrc |
| 11246 | | using 407794 points |
| 11247 | | correlation = 0.9534, correlation about mean = 0.4429, overlap = 6.694e+05 |
| 11248 | | steps = 84, shift = 30.2, angle = 4.21 degrees |
| 11249 | | |
| 11250 | | Position of emd_2989_2015_linkage4.map (#23) relative to |
| 11251 | | COPI_golph_linkage4_postprocess.mrc (#22) coordinates: |
| 11252 | | Matrix rotation and translation |
| 11253 | | 0.99992754 -0.01202932 -0.00045014 272.13051854 |
| 11254 | | 0.01202914 0.99992757 -0.00039616 272.13870425 |
| 11255 | | 0.00045487 0.00039072 0.99999982 362.71293920 |
| 11256 | | Axis 0.03266654 -0.03757050 0.99875991 |
| 11257 | | Axis point -23619.40313077 21784.41257175 0.00000000 |
| 11258 | | Rotation angle (degrees) 0.69009646 |
| 11259 | | Shift along axis 360.92831745 |
| 11260 | | |
| 11261 | | |
| 11262 | | > select subtract #23 |
| 11263 | | |
| 11264 | | Nothing selected |
| 11265 | | |
| 11266 | | > hide #!23 models |
| 11267 | | |
| 11268 | | > show #!23 models |
| 11269 | | |
| 11270 | | > hide #!23 models |
| 11271 | | |
| 11272 | | > show #!23 models |
| 11273 | | |
| 11274 | | > hide #!23 models |
| 11275 | | |
| 11276 | | > show #!23 models |
| 11277 | | |
| 11278 | | > hide #!23 models |
| 11279 | | |
| 11280 | | > show #!23 models |
| 11281 | | |
| 11282 | | > hide #!23 models |
| 11283 | | |
| 11284 | | > show #!23 models |
| 11285 | | |
| 11286 | | > hide #!23 models |
| 11287 | | |
| 11288 | | > show #!23 models |
| 11289 | | |
| 11290 | | > show #!2 models |
| 11291 | | |
| 11292 | | > hide #!2 models |
| 11293 | | |
| 11294 | | > show #!2 models |
| 11295 | | |
| 11296 | | > hide #!23 models |
| 11297 | | |
| 11298 | | > show #!23 models |
| 11299 | | |
| 11300 | | > hide #!23 models |
| 11301 | | |
| 11302 | | > show #!23 models |
| 11303 | | |
| 11304 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and |
| 11305 | | > resources/Processing/References/emd_3724_2017_linkage4.map" |
| 11306 | | |
| 11307 | | Opened emd_3724_2017_linkage4.map as #24, grid size 212,212,212, pixel 1.78, |
| 11308 | | shown at level 0.0902, step 1, values float32 |
| 11309 | | |
| 11310 | | > hide #!23 models |
| 11311 | | |
| 11312 | | > select add #24 |
| 11313 | | |
| 11314 | | 2 models selected |
| 11315 | | |
| 11316 | | > volume #24 level 0.05394 |
| 11317 | | |
| 11318 | | > view matrix models |
| 11319 | | > #24,0.78919,0.23102,-0.56904,99.742,-0.57051,0.61881,-0.53999,277.58,0.22738,0.7508,0.62016,-115.18 |
| 11320 | | |
| 11321 | | > view matrix models |
| 11322 | | > #24,0.78489,-0.47897,-0.39311,202.3,-0.091465,0.53791,-0.83803,256.77,0.61285,0.69372,0.37839,-133.08 |
| 11323 | | |
| 11324 | | > view matrix models |
| 11325 | | > #24,0.83222,-0.29524,-0.46929,172.63,-0.21993,0.60119,-0.76824,256.36,0.50895,0.74256,0.4354,-133.08 |
| 11326 | | |
| 11327 | | > view matrix models |
| 11328 | | > #24,0.95159,-0.26646,-0.15322,87.201,0.21686,0.93528,-0.27968,22.214,0.21783,0.23291,0.94779,-75.429 |
| 11329 | | |
| 11330 | | > ui mousemode right "translate selected models" |
| 11331 | | |
| 11332 | | > view matrix models |
| 11333 | | > #24,0.95159,-0.26646,-0.15322,153.28,0.21686,0.93528,-0.27968,174.12,0.21783,0.23291,0.94779,46.043 |
| 11334 | | |
| 11335 | | > ui mousemode right "rotate selected models" |
| 11336 | | |
| 11337 | | > view matrix models |
| 11338 | | > #24,0.71759,-0.051309,-0.69458,255.34,0.34165,0.89498,0.28686,55.113,0.60691,-0.44315,0.65975,152.49 |
| 11339 | | |
| 11340 | | > ui mousemode right "translate selected models" |
| 11341 | | |
| 11342 | | > view matrix models |
| 11343 | | > #24,0.71759,-0.051309,-0.69458,221.99,0.34165,0.89498,0.28686,49.003,0.60691,-0.44315,0.65975,138.27 |
| 11344 | | |
| 11345 | | > fitmap #24 inMap #22 |
| 11346 | | |
| 11347 | | Fit map emd_3724_2017_linkage4.map in map COPI_golph_linkage4_postprocess.mrc |
| 11348 | | using 315646 points |
| 11349 | | correlation = 0.9467, correlation about mean = 0.3516, overlap = 1.568e+04 |
| 11350 | | steps = 104, shift = 11.9, angle = 14.3 degrees |
| 11351 | | |
| 11352 | | Position of emd_3724_2017_linkage4.map (#24) relative to |
| 11353 | | COPI_golph_linkage4_postprocess.mrc (#22) coordinates: |
| 11354 | | Matrix rotation and translation |
| 11355 | | -0.85806817 0.51353579 0.00010753 337.14467445 |
| 11356 | | -0.51353580 -0.85806817 -0.00005229 530.96482694 |
| 11357 | | 0.00006542 -0.00010009 1.00000000 166.67646029 |
| 11358 | | Axis -0.00004654 0.00004100 -1.00000000 |
| 11359 | | Axis point 241.94384893 218.89661548 0.00000000 |
| 11360 | | Rotation angle (degrees) 149.10036440 |
| 11361 | | Shift along axis -166.67037970 |
| 11362 | | |
| 11363 | | |
| 11364 | | > select subtract #24 |
| 11365 | | |
| 11366 | | Nothing selected |
| 11367 | | |
| 11368 | | > select add #24 |
| 11369 | | |
| 11370 | | 2 models selected |
| 11371 | | |
| 11372 | | > select subtract #24 |
| 11373 | | |
| 11374 | | Nothing selected |
| 11375 | | |
| 11376 | | > hide #!24 models |
| 11377 | | |
| 11378 | | > show #!24 models |
| 11379 | | |
| 11380 | | > hide #!24 models |
| 11381 | | |
| 11382 | | > show #!24 models |
| 11383 | | |
| 11384 | | > hide #!2 models |
| 11385 | | |
| 11386 | | > hide #!22 models |
| 11387 | | |
| 11388 | | > volume #24 level 0.03927 |
| 11389 | | |
| 11390 | | > show #!22 models |
| 11391 | | |
| 11392 | | > hide #!24 models |
| 11393 | | |
| 11394 | | > show #!24 models |
| 11395 | | |
| 11396 | | > hide #!24 models |
| 11397 | | |
| 11398 | | > show #!24 models |
| 11399 | | |
| 11400 | | > hide #!24 models |
| 11401 | | |
| 11402 | | > show #!24 models |
| 11403 | | |
| 11404 | | > show #!2 models |
| 11405 | | |
| 11406 | | > hide #!24 models |
| 11407 | | |
| 11408 | | > show #!24 models |
| 11409 | | |
| 11410 | | > hide #!24 models |
| 11411 | | |
| 11412 | | > hide #!22 models |
| 11413 | | |
| 11414 | | > show #!22 models |
| 11415 | | |
| 11416 | | > hide #!22 models |
| 11417 | | |
| 11418 | | > show #!21 models |
| 11419 | | |
| 11420 | | > show #3 models |
| 11421 | | |
| 11422 | | > show #4 models |
| 11423 | | |
| 11424 | | > show #5 models |
| 11425 | | |
| 11426 | | > show #6 models |
| 11427 | | |
| 11428 | | > show #7 models |
| 11429 | | |
| 11430 | | > show #8 models |
| 11431 | | |
| 11432 | | > show #!9 models |
| 11433 | | |
| 11434 | | > show #10 models |
| 11435 | | |
| 11436 | | > show #11 models |
| 11437 | | |
| 11438 | | > show #12 models |
| 11439 | | |
| 11440 | | > show #13 models |
| 11441 | | |
| 11442 | | > show #14 models |
| 11443 | | |
| 11444 | | > hide #!21 models |
| 11445 | | |
| 11446 | | > hide #14 models |
| 11447 | | |
| 11448 | | > hide #13 models |
| 11449 | | |
| 11450 | | > hide #12 models |
| 11451 | | |
| 11452 | | > hide #11 models |
| 11453 | | |
| 11454 | | > hide #10 models |
| 11455 | | |
| 11456 | | > hide #!9 models |
| 11457 | | |
| 11458 | | > hide #8 models |
| 11459 | | |
| 11460 | | > hide #7 models |
| 11461 | | |
| 11462 | | > hide #6 models |
| 11463 | | |
| 11464 | | > hide #5 models |
| 11465 | | |
| 11466 | | > hide #4 models |
| 11467 | | |
| 11468 | | > hide #3 models |
| 11469 | | |
| 11470 | | > hide #!2 models |
| 11471 | | |
| 11472 | | > show #!2 models |
| 11473 | | |
| 11474 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and |
| 11475 | | > resources/Processing/References/emd_3720_2017_leaf.map" |
| 11476 | | |
| 11477 | | Opened emd_3720_2017_leaf.map as #25, grid size 128,128,128, pixel 1.78, shown |
| 11478 | | at level 0.226, step 1, values float32 |
| 11479 | | |
| 11480 | | > volume #25 level 0.1454 |
| 11481 | | |
| 11482 | | > color #2 #929292ff models |
| 11483 | | |
| 11484 | | > color #2 #73fdffff models |
| 11485 | | |
| 11486 | | > color #2 #fffc79ff models |
| 11487 | | |
| 11488 | | > color #2 #999999ff models |
| 11489 | | |
| 11490 | | > color #2 #fffc79ff models |
| 11491 | | |
| 11492 | | > color #2 #ffffb0ff models |
| 11493 | | |
| 11494 | | > color #2 #f2ffbaff models |
| 11495 | | |
| 11496 | | > color #2 #fcffcfff models |
| 11497 | | |
| 11498 | | > color #2 #f2ffaeff models |
| 11499 | | |
| 11500 | | > color #2 #ffd8f4ff models |
| 11501 | | |
| 11502 | | > color #2 #fffccaff models |
| 11503 | | |
| 11504 | | > color #2 #f7ffcdff models |
| 11505 | | |
| 11506 | | > color #2 #fffabeff models |
| 11507 | | |
| 11508 | | > color #25 #e9ebb8ff models |
| 11509 | | |
| 11510 | | > color #25 #deeb9eff models |
| 11511 | | |
| 11512 | | > color #25 #ebf9a7ff models |
| 11513 | | |
| 11514 | | > color #25 #f3f9a6ff models |
| 11515 | | |
| 11516 | | > color #25 #f3f9aaff models |
| 11517 | | |
| 11518 | | > show #!24 models |
| 11519 | | |
| 11520 | | > select add #25 |
| 11521 | | |
| 11522 | | 2 models selected |
| 11523 | | |
| 11524 | | > view matrix models #25,1,0,0,-41.912,0,1,0,34.291,0,0,1,2.5166 |
| 11525 | | |
| 11526 | | > ui mousemode right "rotate selected models" |
| 11527 | | |
| 11528 | | > view matrix models |
| 11529 | | > #25,0.96426,-0.23087,-0.12999,5.6177,0.18956,0.94394,-0.27028,52.776,0.1851,0.23598,0.95397,-40.863 |
| 11530 | | |
| 11531 | | > view matrix models |
| 11532 | | > #25,0.91729,-0.16267,-0.36348,31.464,0.012177,0.92379,-0.3827,89.007,0.39803,0.34662,0.84937,-65.244 |
| 11533 | | |
| 11534 | | > ui mousemode right "translate selected models" |
| 11535 | | |
| 11536 | | > view matrix models |
| 11537 | | > #25,0.91729,-0.16267,-0.36348,126.12,0.012177,0.92379,-0.3827,161.5,0.39803,0.34662,0.84937,124.78 |
| 11538 | | |
| 11539 | | > hide #!24 models |
| 11540 | | |
| 11541 | | > view matrix models |
| 11542 | | > #25,0.91729,-0.16267,-0.36348,7.3962,0.012177,0.92379,-0.3827,284.85,0.39803,0.34662,0.84937,98.36 |
| 11543 | | |
| 11544 | | > view matrix models |
| 11545 | | > #25,0.91729,-0.16267,-0.36348,27.37,0.012177,0.92379,-0.3827,196.31,0.39803,0.34662,0.84937,88.723 |
| 11546 | | |
| 11547 | | > ui mousemode right "rotate selected models" |
| 11548 | | |
| 11549 | | > view matrix models |
| 11550 | | > #25,0.65529,0.18882,-0.7314,60.216,-0.017341,0.97176,0.23534,118.01,0.75518,-0.14153,0.64006,132.33 |
| 11551 | | |
| 11552 | | > view matrix models |
| 11553 | | > #25,0.95499,-0.28566,0.079919,-16.677,0.064815,0.46387,0.88353,89.693,-0.28946,-0.83858,0.46151,355.29 |
| 11554 | | |
| 11555 | | > view matrix models |
| 11556 | | > #25,0.33031,-0.036013,-0.94319,149.72,0.85537,-0.41104,0.31525,174.59,-0.39904,-0.9109,-0.10497,445.86 |
| 11557 | | |
| 11558 | | > view matrix models |
| 11559 | | > #25,-0.77549,-0.4415,0.45133,151.62,0.46194,-0.88406,-0.071088,322.85,0.43039,0.15336,0.88952,103.19 |
| 11560 | | |
| 11561 | | > view matrix models |
| 11562 | | > #25,-0.84286,-0.41501,0.34258,169.42,0.25572,-0.86901,-0.42358,387.63,0.4735,-0.26942,0.83858,154.99 |
| 11563 | | |
| 11564 | | > view matrix models |
| 11565 | | > #25,0.12351,-0.9746,-0.18682,192.09,0.73033,0.21673,-0.6478,232.12,0.67183,-0.056431,0.73855,119.49 |
| 11566 | | |
| 11567 | | > view matrix models |
| 11568 | | > #25,0.010832,-0.96658,-0.25615,212.37,0.80335,0.16094,-0.57335,221.39,0.59541,-0.19957,0.77824,140.31 |
| 11569 | | |
| 11570 | | > view matrix models |
| 11571 | | > #25,-0.48903,-0.59127,-0.64129,271.34,0.39209,0.50772,-0.76712,250.25,0.77917,-0.62659,-0.016461,268.1 |
| 11572 | | |
| 11573 | | > view matrix models |
| 11574 | | > #25,0.021881,-0.9866,-0.16166,201.9,0.85769,0.10161,-0.50403,213.82,0.51371,-0.12763,0.84842,132.34 |
| 11575 | | |
| 11576 | | > view matrix models |
| 11577 | | > #25,0.1303,-0.99144,0.0079275,169.41,0.81674,0.11186,0.56605,85.788,-0.5621,-0.067281,0.82433,249.53 |
| 11578 | | |
| 11579 | | > view matrix models |
| 11580 | | > #25,0.0062707,0.97016,-0.24238,-19.761,0.46687,0.2115,0.85866,77.46,0.8843,-0.11854,-0.45161,249.09 |
| 11581 | | |
| 11582 | | > view matrix models |
| 11583 | | > #25,0.41662,0.7801,0.46676,-130.51,-0.52765,-0.2106,0.82294,244.44,0.74028,-0.58914,0.32388,226.22 |
| 11584 | | |
| 11585 | | > view matrix models |
| 11586 | | > #25,0.4615,0.5753,0.67531,-136.77,-0.676,0.721,-0.15225,269.86,-0.57449,-0.38625,0.72165,301.57 |
| 11587 | | |
| 11588 | | > view matrix models |
| 11589 | | > #25,0.43916,0.89229,-0.10472,-76.243,-0.89059,0.44771,0.079981,298.15,0.11825,0.058135,0.99128,137.27 |
| 11590 | | |
| 11591 | | > view matrix models |
| 11592 | | > #25,0.20078,0.35184,0.91427,-110.04,-0.97403,0.17138,0.14795,332.17,-0.10463,-0.92024,0.37712,354.53 |
| 11593 | | |
| 11594 | | > view matrix models |
| 11595 | | > #25,-0.84154,0.1305,0.5242,81.912,-0.53283,-0.040844,-0.84523,429.66,-0.088896,-0.99061,0.10391,394.7 |
| 11596 | | |
| 11597 | | > show #!24 models |
| 11598 | | |
| 11599 | | > view matrix models |
| 11600 | | > #25,-0.90431,0.37116,0.21085,98.786,-0.42686,-0.78377,-0.4511,457.89,-0.002175,-0.49794,0.86721,232.42 |
| 11601 | | |
| 11602 | | > hide #!24 models |
| 11603 | | |
| 11604 | | > view matrix models |
| 11605 | | > #25,-0.95634,-0.1526,-0.24927,223.63,-0.11247,-0.59506,0.79577,246.76,-0.26976,0.78906,0.55191,147.87 |
| 11606 | | |
| 11607 | | > view matrix models |
| 11608 | | > #25,-0.89731,-0.0033763,-0.44139,222.76,0.076106,-0.98618,-0.14717,387.92,-0.43479,-0.16565,0.88516,239.42 |
| 11609 | | |
| 11610 | | > view matrix models |
| 11611 | | > #25,-0.87865,-0.056022,-0.47416,230.96,0.04276,-0.99833,0.038717,370.31,-0.47554,0.013744,0.87959,223.31 |
| 11612 | | |
| 11613 | | > view matrix models |
| 11614 | | > #25,-0.91901,-0.029536,-0.39314,222.41,0.024052,-0.99953,0.018868,375,-0.39351,0.0078841,0.91929,209.87 |
| 11615 | | |
| 11616 | | > ui mousemode right "translate selected models" |
| 11617 | | |
| 11618 | | > view matrix models |
| 11619 | | > #25,-0.91901,-0.029536,-0.39314,470.33,0.024052,-0.99953,0.018868,458.63,-0.39351,0.0078841,0.91929,197.95 |
| 11620 | | |
| 11621 | | > view matrix models |
| 11622 | | > #25,-0.91901,-0.029536,-0.39314,464.34,0.024052,-0.99953,0.018868,465.68,-0.39351,0.0078841,0.91929,268.78 |
| 11623 | | |
| 11624 | | > view matrix models |
| 11625 | | > #25,-0.91901,-0.029536,-0.39314,527.77,0.024052,-0.99953,0.018868,479.54,-0.39351,0.0078841,0.91929,251.92 |
| 11626 | | |
| 11627 | | > view matrix models |
| 11628 | | > #25,-0.91901,-0.029536,-0.39314,593.7,0.024052,-0.99953,0.018868,474.77,-0.39351,0.0078841,0.91929,75.514 |
| 11629 | | |
| 11630 | | > view matrix models |
| 11631 | | > #25,-0.91901,-0.029536,-0.39314,598.58,0.024052,-0.99953,0.018868,483.44,-0.39351,0.0078841,0.91929,137.26 |
| 11632 | | |
| 11633 | | > ui mousemode right "rotate selected models" |
| 11634 | | |
| 11635 | | > view matrix models |
| 11636 | | > #25,-0.76838,-0.51111,-0.38516,638.02,-0.034123,-0.56825,0.82215,339.92,-0.63908,0.64487,0.41919,150.44 |
| 11637 | | |
| 11638 | | > view matrix models |
| 11639 | | > #25,-0.99982,0.017582,-0.0068337,554.63,-0.013343,-0.40312,0.91505,306.47,0.013334,0.91498,0.40328,46.544 |
| 11640 | | |
| 11641 | | > view matrix models |
| 11642 | | > #25,-0.47493,-0.79027,0.38719,543.33,0.53905,-0.60902,-0.58183,452.52,0.69561,-0.067615,0.71523,48.391 |
| 11643 | | |
| 11644 | | > view matrix models |
| 11645 | | > #25,-0.19314,-0.95942,0.20546,554.01,0.76506,-0.27837,-0.58068,387.44,0.61431,0.045032,0.78778,35.225 |
| 11646 | | |
| 11647 | | > ui mousemode right "translate selected models" |
| 11648 | | |
| 11649 | | > view matrix models |
| 11650 | | > #25,-0.19314,-0.95942,0.20546,220.47,0.76506,-0.27837,-0.58068,240.93,0.61431,0.045032,0.78778,244.62 |
| 11651 | | |
| 11652 | | > ui mousemode right "rotate selected models" |
| 11653 | | |
| 11654 | | > view matrix models |
| 11655 | | > #25,-0.30827,-0.90601,-0.29002,287.95,0.66898,0.010287,-0.74321,237.32,0.67634,-0.42312,0.60293,316.15 |
| 11656 | | |
| 11657 | | > view matrix models |
| 11658 | | > #25,-0.4948,-0.4633,-0.73521,310.89,0.59277,0.43871,-0.67539,186.5,0.63545,-0.76999,0.057559,429.11 |
| 11659 | | |
| 11660 | | > view matrix models |
| 11661 | | > #25,0.65402,-0.7261,0.21223,96.193,0.1317,-0.16698,-0.97712,347.83,0.74493,0.66701,-0.013583,254.13 |
| 11662 | | |
| 11663 | | > view matrix models |
| 11664 | | > #25,0.4121,-0.52999,0.74113,35.154,0.69997,0.70488,0.11486,45.605,-0.58328,0.47144,0.66146,344.46 |
| 11665 | | |
| 11666 | | > view matrix models |
| 11667 | | > #25,0.90161,-0.29113,-0.31992,81.737,0.36619,0.90739,0.20626,47.904,0.23025,-0.30312,0.92472,312.66 |
| 11668 | | |
| 11669 | | > view matrix models |
| 11670 | | > #25,0.88191,-0.075398,-0.46534,76.094,-0.061894,0.96006,-0.27286,148.79,0.46733,0.26944,0.84202,227.79 |
| 11671 | | |
| 11672 | | > view matrix models |
| 11673 | | > #25,0.76612,-0.34609,0.54156,-2.224,0.40585,0.91389,0.0098876,66.772,-0.49835,0.21222,0.8406,343.78 |
| 11674 | | |
| 11675 | | > view matrix models |
| 11676 | | > #25,0.54482,0.50226,0.67149,-94.367,-0.33773,0.86439,-0.37251,203.57,-0.76753,-0.023832,0.64057,426.88 |
| 11677 | | |
| 11678 | | > view matrix models |
| 11679 | | > #25,0.64577,0.53526,0.5445,-94.099,-0.46545,0.84127,-0.27498,208.76,-0.60526,-0.075863,0.79241,396.12 |
| 11680 | | |
| 11681 | | > show #!24 models |
| 11682 | | |
| 11683 | | > ui mousemode right "rotate selected models" |
| 11684 | | |
| 11685 | | > view matrix models |
| 11686 | | > #25,0.67418,0.66192,-0.32764,-5.2941,-0.71997,0.68792,-0.09167,233.27,0.16471,0.29769,0.94035,246.5 |
| 11687 | | |
| 11688 | | > view matrix models |
| 11689 | | > #25,0.5916,0.74324,-0.31243,-7.538,-0.64796,0.6689,0.36431,171.4,0.47975,-0.013081,0.87731,255.74 |
| 11690 | | |
| 11691 | | > view matrix models |
| 11692 | | > #25,0.7763,0.62354,-0.092497,-41.124,-0.6114,0.78051,0.13034,182.7,0.15347,-0.044628,0.98715,282.84 |
| 11693 | | |
| 11694 | | > view matrix models |
| 11695 | | > #25,0.51427,0.8541,0.07768,-59.943,-0.66054,0.33669,0.67106,174.76,0.547,-0.39642,0.73732,311.05 |
| 11696 | | |
| 11697 | | > view matrix models |
| 11698 | | > #25,0.76581,0.64046,0.057799,-60.417,-0.62728,0.76379,-0.15211,221.18,-0.14157,0.080233,0.98667,301.31 |
| 11699 | | |
| 11700 | | > ui mousemode right "translate selected models" |
| 11701 | | |
| 11702 | | > view matrix models |
| 11703 | | > #25,0.76581,0.64046,0.057799,-226.92,-0.62728,0.76379,-0.15211,234.51,-0.14157,0.080233,0.98667,258.34 |
| 11704 | | |
| 11705 | | > view matrix models |
| 11706 | | > #25,0.76581,0.64046,0.057799,-170.52,-0.62728,0.76379,-0.15211,170.2,-0.14157,0.080233,0.98667,62.307 |
| 11707 | | |
| 11708 | | > ui mousemode right "rotate selected models" |
| 11709 | | |
| 11710 | | > view matrix models |
| 11711 | | > #25,0.058443,0.83177,-0.55204,-38.594,-0.88813,0.29583,0.35171,193.56,0.45585,0.46973,0.75601,-23.243 |
| 11712 | | |
| 11713 | | > view matrix models |
| 11714 | | > #25,0.14464,0.67021,-0.72794,-7.4537,-0.73788,0.56321,0.37192,142.24,0.65925,0.48334,0.576,-25.715 |
| 11715 | | |
| 11716 | | > view matrix models |
| 11717 | | > #25,0.14867,0.52468,-0.83822,22.99,-0.85703,0.49125,0.15548,190.85,0.49335,0.69526,0.5227,-25.715 |
| 11718 | | |
| 11719 | | > view matrix models |
| 11720 | | > #25,0.20723,0.47079,-0.85756,25.183,-0.80501,0.58016,0.12397,178.25,0.55589,0.66466,0.49921,-26.24 |
| 11721 | | |
| 11722 | | > view matrix models |
| 11723 | | > #25,0.20617,0.46946,-0.85855,25.582,-0.80524,0.57989,0.12372,178.34,0.55595,0.66583,0.49758,-26.186 |
| 11724 | | |
| 11725 | | > ui mousemode right "translate selected models" |
| 11726 | | |
| 11727 | | > view matrix models |
| 11728 | | > #25,0.20617,0.46946,-0.85855,45.406,-0.80524,0.57989,0.12372,368.39,0.55595,0.66583,0.49758,47.974 |
| 11729 | | |
| 11730 | | > view matrix models |
| 11731 | | > #25,0.20617,0.46946,-0.85855,107.16,-0.80524,0.57989,0.12372,347.44,0.55595,0.66583,0.49758,7.5907 |
| 11732 | | |
| 11733 | | > view matrix models |
| 11734 | | > #25,0.20617,0.46946,-0.85855,105.66,-0.80524,0.57989,0.12372,402.82,0.55595,0.66583,0.49758,12.549 |
| 11735 | | |
| 11736 | | > view matrix models |
| 11737 | | > #25,0.20617,0.46946,-0.85855,103.33,-0.80524,0.57989,0.12372,417.75,0.55595,0.66583,0.49758,5.057 |
| 11738 | | |
| 11739 | | > view matrix models |
| 11740 | | > #25,0.20617,0.46946,-0.85855,117.56,-0.80524,0.57989,0.12372,396.23,0.55595,0.66583,0.49758,-6.4383 |
| 11741 | | |
| 11742 | | > view matrix models |
| 11743 | | > #25,0.20617,0.46946,-0.85855,118.34,-0.80524,0.57989,0.12372,406.81,0.55595,0.66583,0.49758,-5.2511 |
| 11744 | | |
| 11745 | | > view matrix models |
| 11746 | | > #25,0.20617,0.46946,-0.85855,141.83,-0.80524,0.57989,0.12372,379.88,0.55595,0.66583,0.49758,14.412 |
| 11747 | | |
| 11748 | | > hide #!24 models |
| 11749 | | |
| 11750 | | > show #!22 models |
| 11751 | | |
| 11752 | | > view matrix models |
| 11753 | | > #25,0.20617,0.46946,-0.85855,106.87,-0.80524,0.57989,0.12372,394.09,0.55595,0.66583,0.49758,-16.511 |
| 11754 | | |
| 11755 | | > fitmap #25 inMap #22 |
| 11756 | | |
| 11757 | | Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage4_postprocess.mrc |
| 11758 | | using 65799 points |
| 11759 | | correlation = 0.8265, correlation about mean = 0.04987, overlap = 5750 |
| 11760 | | steps = 204, shift = 81.5, angle = 36.7 degrees |
| 11761 | | |
| 11762 | | Position of emd_3720_2017_leaf.map (#25) relative to |
| 11763 | | COPI_golph_linkage4_postprocess.mrc (#22) coordinates: |
| 11764 | | Matrix rotation and translation |
| 11765 | | -0.88574578 -0.10173812 0.45288384 439.94615531 |
| 11766 | | 0.24571279 -0.93053807 0.27152188 352.11709037 |
| 11767 | | 0.39380153 0.35177871 0.84921852 134.03743636 |
| 11768 | | Axis 0.22203459 0.16345421 0.96124053 |
| 11769 | | Axis point 190.00483138 182.52401271 0.00000000 |
| 11770 | | Rotation angle (degrees) 169.58768934 |
| 11771 | | Shift along axis 284.08050099 |
| 11772 | | |
| 11773 | | |
| 11774 | | > view matrix models |
| 11775 | | > #25,0.41163,0.060752,-0.90932,179.23,-0.34128,0.93545,-0.091991,326.68,0.84504,0.3482,0.40579,-31.482 |
| 11776 | | |
| 11777 | | > ui mousemode right "rotate selected models" |
| 11778 | | |
| 11779 | | > view matrix models |
| 11780 | | > #25,0.46191,-0.20129,-0.86379,199.21,-0.2006,0.92496,-0.32281,340.4,0.86395,0.32238,0.38687,-28.213 |
| 11781 | | |
| 11782 | | > view matrix models |
| 11783 | | > #25,0.57997,0.041302,-0.81359,150.79,-0.50212,0.80457,-0.31709,388.09,0.64149,0.59242,0.48736,-47.649 |
| 11784 | | |
| 11785 | | > hide #!22 models |
| 11786 | | |
| 11787 | | > show #!22 models |
| 11788 | | |
| 11789 | | > hide #!25 models |
| 11790 | | |
| 11791 | | > show #!25 models |
| 11792 | | |
| 11793 | | > view matrix models |
| 11794 | | > #25,0.62791,-0.011837,-0.7782,147.37,-0.51511,0.74323,-0.42694,410.36,0.58343,0.66893,0.46058,-46.93 |
| 11795 | | |
| 11796 | | > ui mousemode right "translate selected models" |
| 11797 | | |
| 11798 | | > view matrix models |
| 11799 | | > #25,0.62791,-0.011837,-0.7782,149.03,-0.51511,0.74323,-0.42694,375.5,0.58343,0.66893,0.46058,-40.828 |
| 11800 | | |
| 11801 | | > view matrix models |
| 11802 | | > #25,0.62791,-0.011837,-0.7782,153.93,-0.51511,0.74323,-0.42694,370.82,0.58343,0.66893,0.46058,-36.477 |
| 11803 | | |
| 11804 | | > view matrix models |
| 11805 | | > #25,0.62791,-0.011837,-0.7782,166,-0.51511,0.74323,-0.42694,385.93,0.58343,0.66893,0.46058,16.622 |
| 11806 | | |
| 11807 | | > fitmap #25 inMap #22 |
| 11808 | | |
| 11809 | | Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage4_postprocess.mrc |
| 11810 | | using 65799 points |
| 11811 | | correlation = 0.8267, correlation about mean = 0.05035, overlap = 5750 |
| 11812 | | steps = 144, shift = 41.1, angle = 26.6 degrees |
| 11813 | | |
| 11814 | | Position of emd_3720_2017_leaf.map (#25) relative to |
| 11815 | | COPI_golph_linkage4_postprocess.mrc (#22) coordinates: |
| 11816 | | Matrix rotation and translation |
| 11817 | | -0.88557913 -0.10013770 0.45356593 439.65237921 |
| 11818 | | 0.24461362 -0.93064817 0.27213628 352.23089454 |
| 11819 | | 0.39485921 0.35194662 0.84865764 133.94323367 |
| 11820 | | Axis 0.22249542 0.16366274 0.96109848 |
| 11821 | | Axis point 189.94292506 182.41568594 0.00000000 |
| 11822 | | Rotation angle (degrees) 169.66793830 |
| 11823 | | Shift along axis 284.20035559 |
| 11824 | | |
| 11825 | | |
| 11826 | | > view matrix models |
| 11827 | | > #25,0.4111,0.059423,-0.90965,177.79,-0.34005,0.93584,-0.092545,262.62,0.84579,0.34737,0.40493,5.601 |
| 11828 | | |
| 11829 | | > view matrix models |
| 11830 | | > #25,0.4111,0.059423,-0.90965,178.44,-0.34005,0.93584,-0.092545,284.58,0.84579,0.34737,0.40493,9.3357 |
| 11831 | | |
| 11832 | | > view matrix models |
| 11833 | | > #25,0.4111,0.059423,-0.90965,175.29,-0.34005,0.93584,-0.092545,289.9,0.84579,0.34737,0.40493,4.0216 |
| 11834 | | |
| 11835 | | > view matrix models |
| 11836 | | > #25,0.4111,0.059423,-0.90965,20.079,-0.34005,0.93584,-0.092545,43.072,0.84579,0.34737,0.40493,-77.647 |
| 11837 | | |
| 11838 | | > hide #!22 models |
| 11839 | | |
| 11840 | | > show #!22 models |
| 11841 | | |
| 11842 | | > view matrix models |
| 11843 | | > #25,0.4111,0.059423,-0.90965,316.66,-0.34005,0.93584,-0.092545,-42.739,0.84579,0.34737,0.40493,215.63 |
| 11844 | | |
| 11845 | | > ui mousemode right "rotate selected models" |
| 11846 | | |
| 11847 | | > view matrix models |
| 11848 | | > #25,0.68725,-0.081414,-0.72185,279.22,-0.55997,0.57362,-0.59783,87.337,0.46273,0.81507,0.34863,210.01 |
| 11849 | | |
| 11850 | | > view matrix models |
| 11851 | | > #25,0.65499,-0.071784,-0.75222,285.44,-0.60503,0.54655,-0.57898,93.337,0.45269,0.83435,0.31455,213.03 |
| 11852 | | |
| 11853 | | > view matrix models |
| 11854 | | > #25,-0.25359,-0.95698,0.14101,383.84,0.54222,-0.019905,0.84,-142.89,-0.80106,0.28947,0.52394,393.8 |
| 11855 | | |
| 11856 | | > view matrix models |
| 11857 | | > #25,0.10223,-0.9479,0.30171,322.86,0.79835,0.25912,0.5436,-168.67,-0.59346,0.1853,0.78325,350.94 |
| 11858 | | |
| 11859 | | > view matrix models |
| 11860 | | > #25,0.54789,-0.78857,0.27923,256.32,0.80996,0.58354,0.058703,-149.11,-0.20923,0.194,0.95843,285.02 |
| 11861 | | |
| 11862 | | > view matrix models |
| 11863 | | > #25,0.65616,-0.56688,-0.4981,313.14,0.74969,0.41436,0.51601,-178.3,-0.086123,-0.71201,0.69687,411.29 |
| 11864 | | |
| 11865 | | > view matrix models |
| 11866 | | > #25,0.29889,-0.25568,-0.9194,368.09,0.91319,0.35632,0.19778,-150.75,0.27703,-0.8987,0.33998,436.39 |
| 11867 | | |
| 11868 | | > view matrix models |
| 11869 | | > #25,0.17207,-0.32966,-0.92829,392.32,0.97418,0.19675,0.11071,-127.91,0.14614,-0.92337,0.355,452.26 |
| 11870 | | |
| 11871 | | > view matrix models |
| 11872 | | > #25,0.31825,-0.24155,-0.91672,363.89,0.89993,0.38101,0.21203,-153.95,0.29806,-0.89246,0.33863,433.44 |
| 11873 | | |
| 11874 | | > ui mousemode right "translate selected models" |
| 11875 | | |
| 11876 | | > view matrix models |
| 11877 | | > #25,0.31825,-0.24155,-0.91672,230.47,0.89993,0.38101,0.21203,185.62,0.29806,-0.89246,0.33863,222.8 |
| 11878 | | |
| 11879 | | > view matrix models |
| 11880 | | > #25,0.31825,-0.24155,-0.91672,230.82,0.89993,0.38101,0.21203,189.52,0.29806,-0.89246,0.33863,231.16 |
| 11881 | | |
| 11882 | | > fitmap #25 inMap #22 |
| 11883 | | |
| 11884 | | Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage4_postprocess.mrc |
| 11885 | | using 65799 points |
| 11886 | | correlation = 0.9378, correlation about mean = 0.08362, overlap = 8320 |
| 11887 | | steps = 68, shift = 3.58, angle = 3.59 degrees |
| 11888 | | |
| 11889 | | Position of emd_3720_2017_leaf.map (#25) relative to |
| 11890 | | COPI_golph_linkage4_postprocess.mrc (#22) coordinates: |
| 11891 | | Matrix rotation and translation |
| 11892 | | -0.30044297 0.76040022 0.57578255 266.90286957 |
| 11893 | | -0.93094345 -0.36514623 -0.00353977 420.26956071 |
| 11894 | | 0.20755318 -0.53708449 0.81759522 283.85937535 |
| 11895 | | Axis -0.29456010 0.20329257 -0.93375933 |
| 11896 | | Axis point 249.68421694 176.04374912 0.00000000 |
| 11897 | | Rotation angle (degrees) 115.08719265 |
| 11898 | | Shift along axis -258.23759378 |
| 11899 | | |
| 11900 | | |
| 11901 | | > select subtract #25 |
| 11902 | | |
| 11903 | | Nothing selected |
| 11904 | | |
| 11905 | | > select add #25 |
| 11906 | | |
| 11907 | | 2 models selected |
| 11908 | | |
| 11909 | | > select subtract #25 |
| 11910 | | |
| 11911 | | Nothing selected |
| 11912 | | |
| 11913 | | > select add #25 |
| 11914 | | |
| 11915 | | 2 models selected |
| 11916 | | |
| 11917 | | > select subtract #25 |
| 11918 | | |
| 11919 | | Nothing selected |
| 11920 | | |
| 11921 | | > select add #25 |
| 11922 | | |
| 11923 | | 2 models selected |
| 11924 | | |
| 11925 | | > select subtract #25 |
| 11926 | | |
| 11927 | | Nothing selected |
| 11928 | | |
| 11929 | | > hide #!25 models |
| 11930 | | |
| 11931 | | > show #!25 models |
| 11932 | | |
| 11933 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and |
| 11934 | | > resources/Processing/References/emd_3720_2017_leaf.map" |
| 11935 | | |
| 11936 | | Opened emd_3720_2017_leaf.map as #26, grid size 128,128,128, pixel 1.78, shown |
| 11937 | | at level 0.226, step 1, values float32 |
| 11938 | | |
| 11939 | | > volume #26 level 0.1148 |
| 11940 | | |
| 11941 | | > select add #26 |
| 11942 | | |
| 11943 | | 2 models selected |
| 11944 | | |
| 11945 | | > view matrix models #26,1,0,0,96.524,0,1,0,-184.96,0,0,1,89.501 |
| 11946 | | |
| 11947 | | > ui mousemode right "rotate selected models" |
| 11948 | | |
| 11949 | | > view matrix models |
| 11950 | | > #26,-0.13949,-0.21888,0.96573,137.67,-0.988,0.096085,-0.12093,49.163,-0.066322,-0.97101,-0.22966,358.18 |
| 11951 | | |
| 11952 | | > view matrix models |
| 11953 | | > #26,0.094026,-0.16046,0.98255,102.27,-0.83889,-0.54424,-0.0086031,95.53,0.53612,-0.82344,-0.18578,267.17 |
| 11954 | | |
| 11955 | | > view matrix models |
| 11956 | | > #26,0.5468,0.51282,-0.66183,164.68,-0.33482,0.85845,0.38854,-176.01,0.7674,0.0091376,0.6411,43.903 |
| 11957 | | |
| 11958 | | > view matrix models |
| 11959 | | > #26,0.24967,0.4646,-0.84959,226.24,-0.32688,0.86631,0.37769,-176.57,0.91149,0.18342,0.36816,38.987 |
| 11960 | | |
| 11961 | | > view matrix models |
| 11962 | | > #26,0.40334,0.60908,-0.68289,171.9,-0.36513,0.79143,0.49023,-176.57,0.83904,0.051609,0.54161,42.463 |
| 11963 | | |
| 11964 | | > view matrix models |
| 11965 | | > #26,0.95778,-0.020064,-0.28681,137.56,-0.047641,0.9727,-0.22714,-149.49,0.28353,0.23122,0.93067,37.962 |
| 11966 | | |
| 11967 | | > view matrix models |
| 11968 | | > #26,0.1681,-0.2563,-0.95187,333.68,-0.078132,0.95911,-0.27204,-139.11,0.98267,0.1201,0.1412,65.286 |
| 11969 | | |
| 11970 | | > view matrix models |
| 11971 | | > #26,0.1449,-0.40682,-0.90194,348.4,0.35155,0.87325,-0.3374,-169.78,0.92489,-0.26819,0.26955,103.07 |
| 11972 | | |
| 11973 | | > view matrix models |
| 11974 | | > #26,-0.056096,-0.592,-0.80398,381.72,0.91057,0.29996,-0.28441,-170.82,0.40954,-0.74804,0.52223,188.92 |
| 11975 | | |
| 11976 | | > view matrix models |
| 11977 | | > #26,-0.39145,-0.53188,-0.75091,406.23,0.79975,-0.60028,0.008276,-85.265,-0.45516,-0.5973,0.66035,252.49 |
| 11978 | | |
| 11979 | | > view matrix models |
| 11980 | | > #26,-0.25922,-0.59649,-0.75961,400.01,0.9591,-0.25156,-0.12977,-128.68,-0.11368,-0.76218,0.63731,236.25 |
| 11981 | | |
| 11982 | | > view matrix models |
| 11983 | | > #26,0.44596,-0.32102,-0.8355,296.23,0.84165,-0.1672,0.51349,-201.39,-0.30454,-0.9322,0.19562,330.31 |
| 11984 | | |
| 11985 | | > view matrix models |
| 11986 | | > #26,0.33725,-0.27315,-0.90092,310.53,0.73746,-0.51819,0.43317,-138.18,-0.58516,-0.81048,0.026681,367.48 |
| 11987 | | |
| 11988 | | > view matrix models |
| 11989 | | > #26,-0.2791,-0.21998,-0.93472,377.95,0.87927,-0.44982,-0.15668,-92.772,-0.38599,-0.86561,0.31897,317.01 |
| 11990 | | |
| 11991 | | > view matrix models |
| 11992 | | > #26,-0.28495,-0.21552,-0.934,377.99,0.8701,-0.46696,-0.1577,-89.566,-0.40215,-0.85761,0.32059,317.7 |
| 11993 | | |
| 11994 | | > ui mousemode right "translate selected models" |
| 11995 | | |
| 11996 | | > view matrix models |
| 11997 | | > #26,-0.28495,-0.21552,-0.934,380.88,0.8701,-0.46696,-0.1577,251.66,-0.40215,-0.85761,0.32059,386.05 |
| 11998 | | |
| 11999 | | > view matrix models |
| 12000 | | > #26,-0.28495,-0.21552,-0.934,480.26,0.8701,-0.46696,-0.1577,-37.198,-0.40215,-0.85761,0.32059,507.75 |
| 12001 | | |
| 12002 | | > hide #!22 models |
| 12003 | | |
| 12004 | | > show #!24 models |
| 12005 | | |
| 12006 | | > color #24 #e2cefcff models |
| 12007 | | |
| 12008 | | > color #24 #e7d8fcff models |
| 12009 | | |
| 12010 | | > color #24 #e7d8fcc7 models |
| 12011 | | |
| 12012 | | > color #26 #eaeab5ff models |
| 12013 | | |
| 12014 | | > view matrix models |
| 12015 | | > #26,-0.28495,-0.21552,-0.934,388,0.8701,-0.46696,-0.1577,-4.1271,-0.40215,-0.85761,0.32059,407.06 |
| 12016 | | |
| 12017 | | > view matrix models |
| 12018 | | > #26,-0.28495,-0.21552,-0.934,462.9,0.8701,-0.46696,-0.1577,-9.4884,-0.40215,-0.85761,0.32059,495.83 |
| 12019 | | |
| 12020 | | > view matrix models |
| 12021 | | > #26,-0.28495,-0.21552,-0.934,320.61,0.8701,-0.46696,-0.1577,155.28,-0.40215,-0.85761,0.32059,477.73 |
| 12022 | | |
| 12023 | | > view matrix models |
| 12024 | | > #26,-0.28495,-0.21552,-0.934,322.5,0.8701,-0.46696,-0.1577,214.78,-0.40215,-0.85761,0.32059,441.07 |
| 12025 | | |
| 12026 | | > ui mousemode right "rotate selected models" |
| 12027 | | |
| 12028 | | > view matrix models |
| 12029 | | > #26,-0.57986,-0.30806,-0.75423,345.72,0.3439,-0.93179,0.11618,297.56,-0.73858,-0.19201,0.64625,361.19 |
| 12030 | | |
| 12031 | | > view matrix models |
| 12032 | | > #26,-0.75763,-0.18356,-0.62634,335.87,0.32369,-0.93898,-0.11636,328.15,-0.56676,-0.2909,0.77082,338.85 |
| 12033 | | |
| 12034 | | > ui mousemode right "translate selected models" |
| 12035 | | |
| 12036 | | > view matrix models |
| 12037 | | > #26,-0.75763,-0.18356,-0.62634,349.47,0.32369,-0.93898,-0.11636,391.07,-0.56676,-0.2909,0.77082,345.79 |
| 12038 | | |
| 12039 | | > view matrix models |
| 12040 | | > #26,-0.75763,-0.18356,-0.62634,358.5,0.32369,-0.93898,-0.11636,366.64,-0.56676,-0.2909,0.77082,306.11 |
| 12041 | | |
| 12042 | | > ui mousemode right "rotate selected models" |
| 12043 | | |
| 12044 | | > view matrix models |
| 12045 | | > #26,-0.62073,-0.6716,-0.40454,375.13,0.23861,-0.65332,0.7185,243.59,-0.74684,0.34947,0.56578,274.18 |
| 12046 | | |
| 12047 | | > view matrix models |
| 12048 | | > #26,-0.52014,-0.37907,-0.76535,371.38,0.27944,-0.92232,0.26691,324.42,-0.80707,-0.075042,0.58567,329.37 |
| 12049 | | |
| 12050 | | > hide #!25 models |
| 12051 | | |
| 12052 | | > hide #!2 models |
| 12053 | | |
| 12054 | | > view matrix models |
| 12055 | | > #26,-0.47579,0.24569,-0.84455,301.06,0.24709,-0.88419,-0.39642,401.83,-0.84414,-0.39729,0.35998,398.71 |
| 12056 | | |
| 12057 | | > view matrix models |
| 12058 | | > #26,-0.52333,0.18217,-0.83243,312.6,0.24078,-0.90546,-0.34952,399.55,-0.81741,-0.38334,0.42999,385.76 |
| 12059 | | |
| 12060 | | > ui mousemode right "translate selected models" |
| 12061 | | |
| 12062 | | > view matrix models |
| 12063 | | > #26,-0.52333,0.18217,-0.83243,322.46,0.24078,-0.90546,-0.34952,382.47,-0.81741,-0.38334,0.42999,399.23 |
| 12064 | | |
| 12065 | | > ui mousemode right "rotate selected models" |
| 12066 | | |
| 12067 | | > view matrix models |
| 12068 | | > #26,-0.7351,0.33096,-0.59168,300.24,0.26758,-0.66025,-0.70176,391.72,-0.62292,-0.67419,0.3968,415.88 |
| 12069 | | |
| 12070 | | > view matrix models |
| 12071 | | > #26,-0.35108,0.6519,-0.67214,227.92,0.22599,-0.63762,-0.73646,397.82,-0.90867,-0.41045,0.076532,454.52 |
| 12072 | | |
| 12073 | | > view matrix models |
| 12074 | | > #26,-0.87619,0.10208,-0.47103,329.31,0.3082,-0.63271,-0.71042,384.85,-0.37054,-0.76763,0.52291,383.59 |
| 12075 | | |
| 12076 | | > view matrix models |
| 12077 | | > #26,-0.63742,-0.76569,0.086096,340.2,0.69136,-0.61769,-0.37481,300.06,0.34017,-0.17939,0.9231,185.61 |
| 12078 | | |
| 12079 | | > view matrix models |
| 12080 | | > #26,0.36742,-0.92496,-0.097251,267.12,0.48645,0.10199,0.86774,90.596,-0.7927,-0.36613,0.48742,387.6 |
| 12081 | | |
| 12082 | | > view matrix models |
| 12083 | | > #26,-0.035903,-0.94768,-0.31719,341.46,0.85844,-0.19175,0.47573,129.86,-0.51166,-0.25521,0.82041,303.22 |
| 12084 | | |
| 12085 | | > view matrix models |
| 12086 | | > #26,0.49042,-0.85306,-0.17826,254.17,0.41024,0.045507,0.91084,100.88,-0.76889,-0.51982,0.37228,416.86 |
| 12087 | | |
| 12088 | | > view matrix models |
| 12089 | | > #26,0.69954,-0.66305,-0.26647,218.21,0.67611,0.4934,0.5472,60.197,-0.23135,-0.56295,0.79345,311.44 |
| 12090 | | |
| 12091 | | > view matrix models |
| 12092 | | > #26,0.56193,-0.50217,-0.65731,260.7,0.81701,0.46121,0.3461,71.832,0.12935,-0.73151,0.66945,305.39 |
| 12093 | | |
| 12094 | | > view matrix models |
| 12095 | | > #26,0.53207,-0.83781,0.12241,212.14,0.84506,0.53446,-0.015123,102.55,-0.052755,0.11149,0.99236,187.16 |
| 12096 | | |
| 12097 | | > view matrix models |
| 12098 | | > #26,0.93919,-0.3008,-0.16563,135.89,0.33731,0.71785,0.60902,64.435,-0.0643,-0.62786,0.77567,302.39 |
| 12099 | | |
| 12100 | | > view matrix models |
| 12101 | | > #26,0.43866,-0.58484,-0.68231,287.48,0.58417,0.76252,-0.27803,135.86,0.68288,-0.27662,0.67613,187.59 |
| 12102 | | |
| 12103 | | > view matrix models |
| 12104 | | > #26,0.91234,-0.39758,-0.097779,142.49,0.31358,0.83209,-0.45748,179.37,0.26325,0.38672,0.88383,131.32 |
| 12105 | | |
| 12106 | | > view matrix models |
| 12107 | | > #26,0.63945,0.02757,-0.76833,201.74,0.15525,0.97414,0.16416,106.94,0.75299,-0.22425,0.61864,180.18 |
| 12108 | | |
| 12109 | | > view matrix models |
| 12110 | | > #26,0.99662,0.019371,-0.079834,81.009,-0.03519,0.97879,-0.20181,171.14,0.074231,0.20394,0.97617,163.65 |
| 12111 | | |
| 12112 | | > view matrix models |
| 12113 | | > #26,0.86423,-0.01501,-0.50287,150.04,-0.041301,0.99406,-0.10065,158.07,0.50139,0.10776,0.85848,140.68 |
| 12114 | | |
| 12115 | | > view matrix models |
| 12116 | | > #26,0.84915,-0.015085,-0.52794,154.72,-0.04001,0.99488,-0.09278,156.89,0.52664,0.099907,0.8442,140.45 |
| 12117 | | |
| 12118 | | > ui mousemode right "translate selected models" |
| 12119 | | |
| 12120 | | > view matrix models |
| 12121 | | > #26,0.84915,-0.015085,-0.52794,138.01,-0.04001,0.99488,-0.09278,176.54,0.52664,0.099907,0.8442,119.16 |
| 12122 | | |
| 12123 | | > view matrix models |
| 12124 | | > #26,0.84915,-0.015085,-0.52794,143.94,-0.04001,0.99488,-0.09278,167.3,0.52664,0.099907,0.8442,127.09 |
| 12125 | | |
| 12126 | | > fitmap #26 inMap #22 |
| 12127 | | |
| 12128 | | Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage4_postprocess.mrc |
| 12129 | | using 93502 points |
| 12130 | | correlation = 0.7498, correlation about mean = 0.04308, overlap = 5998 |
| 12131 | | steps = 120, shift = 44.7, angle = 10.8 degrees |
| 12132 | | |
| 12133 | | Position of emd_3720_2017_leaf.map (#26) relative to |
| 12134 | | COPI_golph_linkage4_postprocess.mrc (#22) coordinates: |
| 12135 | | Matrix rotation and translation |
| 12136 | | -0.99752873 0.05994955 0.03663985 346.15620260 |
| 12137 | | -0.05632233 -0.99406404 0.09308312 452.37718258 |
| 12138 | | 0.04200265 0.09078945 0.99498394 220.70010831 |
| 12139 | | Axis -0.01970204 -0.04606500 -0.99874413 |
| 12140 | | Axis point 177.33157534 216.12223197 0.00000000 |
| 12141 | | Rotation angle (degrees) 176.66298139 |
| 12142 | | Shift along axis -248.08167899 |
| 12143 | | |
| 12144 | | |
| 12145 | | > view matrix models |
| 12146 | | > #26,0.76733,0.10072,-0.6333,168.13,-0.10499,0.99399,0.030875,167.58,0.6326,0.0428,0.77329,98.713 |
| 12147 | | |
| 12148 | | > view matrix models |
| 12149 | | > #26,0.76733,0.10072,-0.6333,157.02,-0.10499,0.99399,0.030875,159.86,0.6326,0.0428,0.77329,112.62 |
| 12150 | | |
| 12151 | | > ui mousemode right "rotate selected models" |
| 12152 | | |
| 12153 | | > view matrix models |
| 12154 | | > #26,0.76486,0.29299,-0.57371,127.29,-0.12989,0.94244,0.30812,136.11,0.63096,-0.16115,0.75889,138.88 |
| 12155 | | |
| 12156 | | > view matrix models |
| 12157 | | > #26,0.98138,-0.11947,0.15038,66.585,0.1547,0.95574,-0.25027,168.22,-0.11382,0.26887,0.95643,148.49 |
| 12158 | | |
| 12159 | | > view matrix models |
| 12160 | | > #26,0.73144,-0.67654,-0.085371,189.27,0.47774,0.59774,-0.6438,220.88,0.48659,0.43011,0.76042,84.395 |
| 12161 | | |
| 12162 | | > view matrix models |
| 12163 | | > #26,0.75471,-0.35463,-0.55195,203.25,0.26169,0.93421,-0.24241,157.75,0.6016,0.038507,0.79787,113.74 |
| 12164 | | |
| 12165 | | > hide #!24 models |
| 12166 | | |
| 12167 | | > show #!24 models |
| 12168 | | |
| 12169 | | > view matrix models |
| 12170 | | > #26,0.75259,-0.35974,-0.55153,204.05,0.26218,0.93203,-0.25017,158.88,0.60404,0.043677,0.79575,113.1 |
| 12171 | | |
| 12172 | | > hide #!26 models |
| 12173 | | |
| 12174 | | > show #!26 models |
| 12175 | | |
| 12176 | | > hide #!26 models |
| 12177 | | |
| 12178 | | > show #!2 models |
| 12179 | | |
| 12180 | | > show #!26 models |
| 12181 | | |
| 12182 | | > hide #!24 models |
| 12183 | | |
| 12184 | | > show #!24 models |
| 12185 | | |
| 12186 | | > hide #!24 models |
| 12187 | | |
| 12188 | | > show #!24 models |
| 12189 | | |
| 12190 | | > hide #!2 models |
| 12191 | | |
| 12192 | | > show #!2 models |
| 12193 | | |
| 12194 | | > hide #!2 models |
| 12195 | | |
| 12196 | | > hide #!24 models |
| 12197 | | |
| 12198 | | > show #!24 models |
| 12199 | | |
| 12200 | | > show #!2 models |
| 12201 | | |
| 12202 | | > view matrix models |
| 12203 | | > #26,0.41557,-0.18056,-0.89146,260.92,-0.0038894,0.97974,-0.20025,177.4,0.90955,0.086688,0.40645,119.33 |
| 12204 | | |
| 12205 | | > view matrix models |
| 12206 | | > #26,0.99774,0.058716,-0.032707,65.055,-0.060258,0.56591,-0.82226,306.65,-0.029771,0.82237,0.56817,118.67 |
| 12207 | | |
| 12208 | | > view matrix models |
| 12209 | | > #26,0.67073,0.19286,-0.71619,166.73,-0.2059,0.97607,0.07001,168.81,0.71255,0.1005,0.69439,105.99 |
| 12210 | | |
| 12211 | | > view matrix models |
| 12212 | | > #26,-0.43931,-0.65376,-0.61612,381.73,-0.73161,-0.13763,0.66769,290.83,-0.5213,0.74408,-0.41784,300.06 |
| 12213 | | |
| 12214 | | > view matrix models |
| 12215 | | > #26,-0.54478,0.76628,-0.34062,191.48,-0.51896,-0.62714,-0.58085,472.63,-0.65871,-0.13966,0.73932,284.61 |
| 12216 | | |
| 12217 | | > view matrix models |
| 12218 | | > #26,-0.46118,0.71836,-0.52084,209.02,-0.51955,-0.69446,-0.49778,470.94,-0.71929,0.041039,0.6935,275.29 |
| 12219 | | |
| 12220 | | > ui mousemode right "translate selected models" |
| 12221 | | |
| 12222 | | > view matrix models |
| 12223 | | > #26,-0.46118,0.71836,-0.52084,142.24,-0.51955,-0.69446,-0.49778,338.77,-0.71929,0.041039,0.6935,155.72 |
| 12224 | | |
| 12225 | | > show #!25 models |
| 12226 | | |
| 12227 | | > view matrix models |
| 12228 | | > #26,-0.46118,0.71836,-0.52084,237.16,-0.51955,-0.69446,-0.49778,363.17,-0.71929,0.041039,0.6935,222.26 |
| 12229 | | |
| 12230 | | > view matrix models |
| 12231 | | > #26,-0.46118,0.71836,-0.52084,83.898,-0.51955,-0.69446,-0.49778,398.51,-0.71929,0.041039,0.6935,108.18 |
| 12232 | | |
| 12233 | | > view matrix models |
| 12234 | | > #26,-0.46118,0.71836,-0.52084,154.78,-0.51955,-0.69446,-0.49778,295.45,-0.71929,0.041039,0.6935,113.59 |
| 12235 | | |
| 12236 | | > view matrix models |
| 12237 | | > #26,-0.46118,0.71836,-0.52084,126.47,-0.51955,-0.69446,-0.49778,307.49,-0.71929,0.041039,0.6935,105.68 |
| 12238 | | |
| 12239 | | > view matrix models |
| 12240 | | > #26,-0.46118,0.71836,-0.52084,124.21,-0.51955,-0.69446,-0.49778,308.74,-0.71929,0.041039,0.6935,105.23 |
| 12241 | | |
| 12242 | | > ui mousemode right "rotate selected models" |
| 12243 | | |
| 12244 | | > view matrix models |
| 12245 | | > #26,-0.38554,0.80657,-0.4481,96.523,-0.60555,-0.58761,-0.53668,310.3,-0.69618,0.064439,0.71497,97.281 |
| 12246 | | |
| 12247 | | > view matrix models |
| 12248 | | > #26,-0.37906,0.92056,0.094306,18.142,-0.58365,-0.15875,-0.79634,287.23,-0.7181,-0.3569,0.59745,163.98 |
| 12249 | | |
| 12250 | | > view matrix models |
| 12251 | | > #26,-0.55593,0.66189,-0.50283,139.56,-0.68414,-0.70793,-0.17548,290.93,-0.47212,0.24645,0.84638,34.657 |
| 12252 | | |
| 12253 | | > view matrix models |
| 12254 | | > #26,-0.7847,-0.055307,-0.61741,264.67,-0.5058,-0.51866,0.68931,146.05,-0.35835,0.85319,0.37902,4.4531 |
| 12255 | | |
| 12256 | | > view matrix models |
| 12257 | | > #26,0.19358,0.91096,0.36426,-77.402,-0.98106,0.17702,0.078668,188.81,0.0071824,-0.37259,0.92797,44.731 |
| 12258 | | |
| 12259 | | > view matrix models |
| 12260 | | > #26,0.401,0.64535,0.65017,-102.9,-0.58738,0.72577,-0.35811,130.24,-0.70298,-0.23829,0.6701,139.52 |
| 12261 | | |
| 12262 | | > view matrix models |
| 12263 | | > #26,0.32629,0.93814,-0.11586,-38.999,-0.88387,0.25935,-0.38925,223.21,-0.33513,0.22941,0.91382,13.224 |
| 12264 | | |
| 12265 | | > view matrix models |
| 12266 | | > #26,-0.10398,0.8308,-0.54677,73.401,-0.99041,-0.036189,0.13335,208.89,0.091004,0.55539,0.82659,-63.668 |
| 12267 | | |
| 12268 | | > view matrix models |
| 12269 | | > #26,0.43436,0.25503,-0.86388,118.69,-0.713,0.68342,-0.15674,125.75,0.55042,0.68403,0.47869,-89.976 |
| 12270 | | |
| 12271 | | > view matrix models |
| 12272 | | > #26,0.87334,0.083429,-0.47992,44.172,-0.42329,0.61753,-0.66294,160.58,0.24105,0.78211,0.57462,-77.999 |
| 12273 | | |
| 12274 | | > view matrix models |
| 12275 | | > #26,0.90567,0.32089,-0.27712,-11.798,-0.40491,0.84845,-0.34084,92.884,0.12576,0.4209,0.89835,-60.003 |
| 12276 | | |
| 12277 | | > ui mousemode right "translate selected models" |
| 12278 | | |
| 12279 | | > view matrix models |
| 12280 | | > #26,0.90567,0.32089,-0.27712,92.66,-0.40491,0.84845,-0.34084,238.75,0.12576,0.4209,0.89835,85.291 |
| 12281 | | |
| 12282 | | > view matrix models |
| 12283 | | > #26,0.90567,0.32089,-0.27712,74.635,-0.40491,0.84845,-0.34084,239.88,0.12576,0.4209,0.89835,93.592 |
| 12284 | | |
| 12285 | | > view matrix models |
| 12286 | | > #26,0.90567,0.32089,-0.27712,84.593,-0.40491,0.84845,-0.34084,207.82,0.12576,0.4209,0.89835,85.417 |
| 12287 | | |
| 12288 | | > view matrix models |
| 12289 | | > #26,0.90567,0.32089,-0.27712,59.959,-0.40491,0.84845,-0.34084,218.88,0.12576,0.4209,0.89835,113.58 |
| 12290 | | |
| 12291 | | > view matrix models |
| 12292 | | > #26,0.90567,0.32089,-0.27712,55.258,-0.40491,0.84845,-0.34084,196.72,0.12576,0.4209,0.89835,113.74 |
| 12293 | | |
| 12294 | | > view matrix models |
| 12295 | | > #26,0.90567,0.32089,-0.27712,50.73,-0.40491,0.84845,-0.34084,201.11,0.12576,0.4209,0.89835,123.93 |
| 12296 | | |
| 12297 | | > ui mousemode right "rotate selected models" |
| 12298 | | |
| 12299 | | > view matrix models |
| 12300 | | > #26,0.29654,0.53167,-0.79334,155.44,-0.70136,0.68506,0.19695,190.71,0.64819,0.49802,0.57604,93.624 |
| 12301 | | |
| 12302 | | > view matrix models |
| 12303 | | > #26,0.15048,0.56432,-0.81173,170.24,-0.69067,0.64748,0.3221,179.22,0.70734,0.51216,0.48719,95.726 |
| 12304 | | |
| 12305 | | > ui mousemode right "translate selected models" |
| 12306 | | |
| 12307 | | > view matrix models |
| 12308 | | > #26,0.15048,0.56432,-0.81173,176.11,-0.69067,0.64748,0.3221,266.02,0.70734,0.51216,0.48719,78.265 |
| 12309 | | |
| 12310 | | > view matrix models |
| 12311 | | > #26,0.15048,0.56432,-0.81173,15.001,-0.69067,0.64748,0.3221,32.363,0.70734,0.51216,0.48719,-105.62 |
| 12312 | | |
| 12313 | | > view matrix models |
| 12314 | | > #26,0.15048,0.56432,-0.81173,68.34,-0.69067,0.64748,0.3221,34.256,0.70734,0.51216,0.48719,-43.798 |
| 12315 | | |
| 12316 | | > view matrix models |
| 12317 | | > #26,0.15048,0.56432,-0.81173,222.36,-0.69067,0.64748,0.3221,245.86,0.70734,0.51216,0.48719,53.586 |
| 12318 | | |
| 12319 | | > fitmap #26 inMap #22 |
| 12320 | | |
| 12321 | | Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage4_postprocess.mrc |
| 12322 | | using 93502 points |
| 12323 | | correlation = 0.877, correlation about mean = 0.1072, overlap = 7580 |
| 12324 | | steps = 144, shift = 67.3, angle = 23.8 degrees |
| 12325 | | |
| 12326 | | Position of emd_3720_2017_leaf.map (#26) relative to |
| 12327 | | COPI_golph_linkage4_postprocess.mrc (#22) coordinates: |
| 12328 | | Matrix rotation and translation |
| 12329 | | -0.88225376 -0.44406300 0.15632130 356.95023437 |
| 12330 | | 0.45852205 -0.88579944 0.07153241 358.90152443 |
| 12331 | | 0.10670443 0.13478650 0.98511256 161.26481449 |
| 12332 | | Axis 0.06980469 0.05475520 0.99605681 |
| 12333 | | Axis point 131.01986728 216.21673342 0.00000000 |
| 12334 | | Rotation angle (degrees) 153.05859172 |
| 12335 | | Shift along axis 205.19744356 |
| 12336 | | |
| 12337 | | |
| 12338 | | > view matrix models |
| 12339 | | > #26,0.53487,0.44736,-0.71679,195.09,-0.58257,0.80971,0.070631,247.8,0.61198,0.3798,0.69371,41.474 |
| 12340 | | |
| 12341 | | > ui mousemode right "rotate selected models" |
| 12342 | | |
| 12343 | | > view matrix models |
| 12344 | | > #26,0.33353,0.59398,-0.73209,202.17,-0.64664,0.70922,0.28083,242.24,0.68602,0.37973,0.62063,41.728 |
| 12345 | | |
| 12346 | | > hide #!26 models |
| 12347 | | |
| 12348 | | > show #!26 models |
| 12349 | | |
| 12350 | | > hide #!25 models |
| 12351 | | |
| 12352 | | > show #!25 models |
| 12353 | | |
| 12354 | | > view matrix models |
| 12355 | | > #26,0.56048,0.7964,-0.22716,92.688,-0.62523,0.58679,0.51455,226.86,0.54308,-0.14637,0.82682,96.428 |
| 12356 | | |
| 12357 | | > view matrix models |
| 12358 | | > #26,0.58459,0.77181,-0.25011,95.606,-0.62987,0.62605,0.45971,229.17,0.51139,-0.1112,0.85212,92.828 |
| 12359 | | |
| 12360 | | > ui mousemode right "translate selected models" |
| 12361 | | |
| 12362 | | > view matrix models |
| 12363 | | > #26,0.58459,0.77181,-0.25011,-111.93,-0.62987,0.62605,0.45971,22.697,0.51139,-0.1112,0.85212,-45.366 |
| 12364 | | |
| 12365 | | > view matrix models |
| 12366 | | > #26,0.58459,0.77181,-0.25011,-97.192,-0.62987,0.62605,0.45971,54.683,0.51139,-0.1112,0.85212,-33.781 |
| 12367 | | |
| 12368 | | > view matrix models |
| 12369 | | > #26,0.58459,0.77181,-0.25011,-102.44,-0.62987,0.62605,0.45971,99.852,0.51139,-0.1112,0.85212,-39.495 |
| 12370 | | |
| 12371 | | > view matrix models |
| 12372 | | > #26,0.58459,0.77181,-0.25011,-107.59,-0.62987,0.62605,0.45971,111.38,0.51139,-0.1112,0.85212,-44.174 |
| 12373 | | |
| 12374 | | > view matrix models |
| 12375 | | > #26,0.58459,0.77181,-0.25011,-109.08,-0.62987,0.62605,0.45971,115.45,0.51139,-0.1112,0.85212,-41.523 |
| 12376 | | |
| 12377 | | > view matrix models |
| 12378 | | > #26,0.58459,0.77181,-0.25011,-89.696,-0.62987,0.62605,0.45971,95.493,0.51139,-0.1112,0.85212,-49.625 |
| 12379 | | |
| 12380 | | > view matrix models |
| 12381 | | > #26,0.58459,0.77181,-0.25011,-82.584,-0.62987,0.62605,0.45971,61.158,0.51139,-0.1112,0.85212,-74.18 |
| 12382 | | |
| 12383 | | > view matrix models |
| 12384 | | > #26,0.58459,0.77181,-0.25011,-95.828,-0.62987,0.62605,0.45971,107.52,0.51139,-0.1112,0.85212,-42.496 |
| 12385 | | |
| 12386 | | > ui mousemode right "rotate selected models" |
| 12387 | | |
| 12388 | | > view matrix models |
| 12389 | | > #26,0.25756,0.86769,-0.42519,-49.595,0.57601,0.21543,0.78854,-18.743,0.7758,-0.44801,-0.44432,120.85 |
| 12390 | | |
| 12391 | | > view matrix models |
| 12392 | | > #26,0.75076,-0.42093,-0.5091,58.444,0.26374,0.8976,-0.35322,69.88,0.60564,0.13091,0.78489,-74.158 |
| 12393 | | |
| 12394 | | > view matrix models |
| 12395 | | > #26,0.40853,0.33683,-0.84832,46.691,0.046773,0.92047,0.388,4.211,0.91155,-0.19819,0.36028,-19.343 |
| 12396 | | |
| 12397 | | > view matrix models |
| 12398 | | > #26,0.01264,0.0016047,-0.99992,149.45,-0.4635,0.88608,-0.0044373,112.41,0.886,0.46352,0.011944,-54.394 |
| 12399 | | |
| 12400 | | > view matrix models |
| 12401 | | > #26,0.34103,0.24805,-0.90674,71.834,-0.017243,0.96605,0.25779,21.383,0.93989,-0.07228,0.33373,-34.461 |
| 12402 | | |
| 12403 | | > view matrix models |
| 12404 | | > #26,-0.011437,-0.33687,-0.94148,185.72,-0.82667,0.53291,-0.18063,216.52,0.56257,0.77623,-0.28457,-20.141 |
| 12405 | | |
| 12406 | | > view matrix models |
| 12407 | | > #26,0.9393,0.3009,-0.16485,-89.781,-0.2782,0.38675,-0.87922,254.36,-0.2008,0.87171,0.44699,-31.49 |
| 12408 | | |
| 12409 | | > view matrix models |
| 12410 | | > #26,0.67367,0.71528,0.18586,-150.62,-0.72541,0.68806,-0.018625,167.39,-0.14121,-0.12228,0.9824,17.325 |
| 12411 | | |
| 12412 | | > view matrix models |
| 12413 | | > #26,-0.21604,0.9618,0.16814,-77.266,-0.65223,-0.014014,-0.75789,330.26,-0.72658,-0.2734,0.63035,143.21 |
| 12414 | | |
| 12415 | | > view matrix models |
| 12416 | | > #26,-0.50268,0.85836,0.10262,-24.725,-0.81347,-0.4295,-0.39217,354.98,-0.29254,-0.28061,0.91415,61.432 |
| 12417 | | |
| 12418 | | > view matrix models |
| 12419 | | > #26,-0.68495,0.72817,-0.024797,26.505,-0.72314,-0.68359,-0.09887,340.5,-0.088945,-0.049789,0.99479,1.2852 |
| 12420 | | |
| 12421 | | > ui mousemode right "translate selected models" |
| 12422 | | |
| 12423 | | > view matrix models |
| 12424 | | > #26,-0.68495,0.72817,-0.024797,226.05,-0.72314,-0.68359,-0.09887,458.07,-0.088945,-0.049789,0.99479,194.14 |
| 12425 | | |
| 12426 | | > view matrix models |
| 12427 | | > #26,-0.68495,0.72817,-0.024797,214.85,-0.72314,-0.68359,-0.09887,456.73,-0.088945,-0.049789,0.99479,191.67 |
| 12428 | | |
| 12429 | | > view matrix models |
| 12430 | | > #26,-0.68495,0.72817,-0.024797,219.41,-0.72314,-0.68359,-0.09887,443.07,-0.088945,-0.049789,0.99479,190.09 |
| 12431 | | |
| 12432 | | > fitmap #26 inMap #22 |
| 12433 | | |
| 12434 | | Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage4_postprocess.mrc |
| 12435 | | using 93502 points |
| 12436 | | correlation = 0.8691, correlation about mean = -0.03408, overlap = 7035 |
| 12437 | | steps = 168, shift = 71.3, angle = 28.9 degrees |
| 12438 | | |
| 12439 | | Position of emd_3720_2017_leaf.map (#26) relative to |
| 12440 | | COPI_golph_linkage4_postprocess.mrc (#22) coordinates: |
| 12441 | | Matrix rotation and translation |
| 12442 | | 0.67126351 -0.61872807 -0.40814319 246.12148248 |
| 12443 | | 0.72190094 0.42083648 0.54932293 164.03711823 |
| 12444 | | -0.16811997 -0.66337939 0.72915255 303.22204906 |
| 12445 | | Axis -0.66500184 -0.13162000 0.73515218 |
| 12446 | | Axis point 82.38815567 394.48105210 0.00000000 |
| 12447 | | Rotation angle (degrees) 65.75581751 |
| 12448 | | Shift along axis 37.65254755 |
| 12449 | | |
| 12450 | | |
| 12451 | | > view matrix models |
| 12452 | | > #26,-0.57238,0.78964,-0.221,59.226,-0.61549,-0.59182,-0.5205,262.25,-0.5418,-0.1619,0.82477,60.766 |
| 12453 | | |
| 12454 | | > ui mousemode right "rotate selected models" |
| 12455 | | |
| 12456 | | > view matrix models |
| 12457 | | > #26,-0.88426,0.42008,-0.20402,136.68,-0.18135,-0.71147,-0.67891,246.1,-0.43035,-0.56333,0.70531,110.22 |
| 12458 | | |
| 12459 | | > view matrix models |
| 12460 | | > #26,-0.91128,0.35438,-0.20971,148.26,-0.114,-0.70649,-0.69848,240.19,-0.39568,-0.61261,0.68421,114.67 |
| 12461 | | |
| 12462 | | > view matrix models |
| 12463 | | > #26,-0.80102,-0.435,-0.41127,253.89,0.54473,-0.24474,-0.80211,122.69,0.24826,-0.86653,0.433,101.77 |
| 12464 | | |
| 12465 | | > view matrix models |
| 12466 | | > #26,-0.95892,0.1552,-0.23745,180.73,0.07831,-0.6597,-0.74744,218.61,-0.27265,-0.73533,0.62044,122.93 |
| 12467 | | |
| 12468 | | > view matrix models |
| 12469 | | > #26,-0.81813,-0.23357,-0.52546,245.24,0.38933,-0.89748,-0.20725,148.05,-0.42318,-0.37413,0.82519,72.646 |
| 12470 | | |
| 12471 | | > view matrix models |
| 12472 | | > #26,-0.24551,-0.55843,-0.79239,250.74,0.85357,-0.51198,0.096347,13.597,-0.45949,-0.65271,0.60236,136.35 |
| 12473 | | |
| 12474 | | > ui mousemode right "translate selected models" |
| 12475 | | |
| 12476 | | > view matrix models |
| 12477 | | > #26,-0.24551,-0.55843,-0.79239,249.96,0.85357,-0.51198,0.096347,11.663,-0.45949,-0.65271,0.60236,136.34 |
| 12478 | | |
| 12479 | | > view matrix models |
| 12480 | | > #26,-0.24551,-0.55843,-0.79239,592.64,0.85357,-0.51198,0.096347,599.4,-0.45949,-0.65271,0.60236,153.8 |
| 12481 | | |
| 12482 | | > view matrix models |
| 12483 | | > #26,-0.24551,-0.55843,-0.79239,532.97,0.85357,-0.51198,0.096347,618.49,-0.45949,-0.65271,0.60236,132.21 |
| 12484 | | |
| 12485 | | > view matrix models |
| 12486 | | > #26,-0.24551,-0.55843,-0.79239,420.87,0.85357,-0.51198,0.096347,614.97,-0.45949,-0.65271,0.60236,209.09 |
| 12487 | | |
| 12488 | | > view matrix models |
| 12489 | | > #26,-0.24551,-0.55843,-0.79239,397.78,0.85357,-0.51198,0.096347,574.65,-0.45949,-0.65271,0.60236,224.44 |
| 12490 | | |
| 12491 | | > ui mousemode right "rotate selected models" |
| 12492 | | |
| 12493 | | > view matrix models |
| 12494 | | > #26,-0.60445,-0.44131,-0.66323,409.18,0.79565,-0.29287,-0.53026,629,0.039771,-0.84822,0.52815,200.04 |
| 12495 | | |
| 12496 | | > view matrix models |
| 12497 | | > #26,-0.25929,-0.77775,-0.57261,399.6,0.95494,-0.2951,-0.031597,552.37,-0.1444,-0.555,0.81922,151.5 |
| 12498 | | |
| 12499 | | > view matrix models |
| 12500 | | > #26,-0.18014,-0.78848,-0.58809,393.75,0.94986,-0.29479,0.10429,536.87,-0.25559,-0.53981,0.80205,164.3 |
| 12501 | | |
| 12502 | | > ui mousemode right "translate selected models" |
| 12503 | | |
| 12504 | | > view matrix models |
| 12505 | | > #26,-0.18014,-0.78848,-0.58809,398.98,0.94986,-0.29479,0.10429,336.22,-0.25559,-0.53981,0.80205,227.86 |
| 12506 | | |
| 12507 | | > hide #!2 models |
| 12508 | | |
| 12509 | | > hide #!25 models |
| 12510 | | |
| 12511 | | > view matrix models |
| 12512 | | > #26,-0.18014,-0.78848,-0.58809,387.14,0.94986,-0.29479,0.10429,330.24,-0.25559,-0.53981,0.80205,227.27 |
| 12513 | | |
| 12514 | | > view matrix models |
| 12515 | | > #26,-0.18014,-0.78848,-0.58809,381.59,0.94986,-0.29479,0.10429,316.26,-0.25559,-0.53981,0.80205,259.11 |
| 12516 | | |
| 12517 | | > ui mousemode right "rotate selected models" |
| 12518 | | |
| 12519 | | > view matrix models |
| 12520 | | > #26,0.069801,-0.42594,-0.90206,347.04,0.93145,-0.29589,0.21179,305.79,-0.35712,-0.855,0.37608,358.54 |
| 12521 | | |
| 12522 | | > view matrix models |
| 12523 | | > #26,0.11925,-0.75307,-0.64705,350.43,0.7515,-0.35744,0.55451,293.05,-0.64886,-0.55238,0.52331,338.03 |
| 12524 | | |
| 12525 | | > view matrix models |
| 12526 | | > #26,0.033708,-0.97476,-0.22071,336.27,0.96158,-0.02857,0.27303,263.21,-0.27245,-0.22143,0.93634,207.12 |
| 12527 | | |
| 12528 | | > view matrix models |
| 12529 | | > #26,-0.10186,-0.38367,-0.91784,363.29,0.87074,-0.48057,0.10425,347.42,-0.48108,-0.78858,0.38303,363.82 |
| 12530 | | |
| 12531 | | > view matrix models |
| 12532 | | > #26,-0.05811,-0.50264,-0.86254,366.02,0.77085,-0.57161,0.28117,348.72,-0.63436,-0.64855,0.42067,360 |
| 12533 | | |
| 12534 | | > view matrix models |
| 12535 | | > #26,0.045534,0.040464,-0.99814,305.4,0.73674,-0.67615,0.0061988,397.53,-0.67464,-0.73565,-0.060599,431.77 |
| 12536 | | |
| 12537 | | > view matrix models |
| 12538 | | > #26,0.0073716,-0.41136,-0.91144,353.47,0.60513,-0.7238,0.33156,379.72,-0.7961,-0.55398,0.24359,387.91 |
| 12539 | | |
| 12540 | | > view matrix models |
| 12541 | | > #26,0.021642,-0.086929,-0.99598,323.07,0.76262,-0.64275,0.072671,382.76,-0.64648,-0.76113,0.052383,418.29 |
| 12542 | | |
| 12543 | | > show #!2 models |
| 12544 | | |
| 12545 | | > show #14 models |
| 12546 | | |
| 12547 | | > hide #14 models |
| 12548 | | |
| 12549 | | > show #14 models |
| 12550 | | |
| 12551 | | > hide #!24 models |
| 12552 | | |
| 12553 | | > view matrix models |
| 12554 | | > #26,-0.21784,-0.75425,-0.61939,385.46,0.8863,-0.41862,0.19806,327.18,-0.40868,-0.50582,0.75969,277.38 |
| 12555 | | |
| 12556 | | > ui mousemode right "translate selected models" |
| 12557 | | |
| 12558 | | > view matrix models |
| 12559 | | > #26,-0.21784,-0.75425,-0.61939,316.76,0.8863,-0.41862,0.19806,384.77,-0.40868,-0.50582,0.75969,217.83 |
| 12560 | | |
| 12561 | | > view matrix models |
| 12562 | | > #26,-0.21784,-0.75425,-0.61939,326.64,0.8863,-0.41862,0.19806,395.43,-0.40868,-0.50582,0.75969,209.78 |
| 12563 | | |
| 12564 | | > view matrix models |
| 12565 | | > #26,-0.21784,-0.75425,-0.61939,309.39,0.8863,-0.41862,0.19806,411.56,-0.40868,-0.50582,0.75969,196.15 |
| 12566 | | |
| 12567 | | > view matrix models |
| 12568 | | > #26,-0.21784,-0.75425,-0.61939,315.14,0.8863,-0.41862,0.19806,414.61,-0.40868,-0.50582,0.75969,189.93 |
| 12569 | | |
| 12570 | | > hide #14 models |
| 12571 | | |
| 12572 | | > hide #!2 models |
| 12573 | | |
| 12574 | | > show #!24 models |
| 12575 | | |
| 12576 | | > view matrix models |
| 12577 | | > #26,-0.21784,-0.75425,-0.61939,420.73,0.8863,-0.41862,0.19806,552.8,-0.40868,-0.50582,0.75969,126.98 |
| 12578 | | |
| 12579 | | > ui mousemode right "rotate selected models" |
| 12580 | | |
| 12581 | | > view matrix models |
| 12582 | | > #26,-0.51625,-0.43407,-0.73828,430.29,0.81685,0.0095092,-0.57678,600.98,0.25738,-0.90083,0.34966,147.18 |
| 12583 | | |
| 12584 | | > view matrix models |
| 12585 | | > #26,-0.68081,-0.26296,-0.68363,422.02,0.70913,-0.0029331,-0.70507,629.8,0.1834,-0.9648,0.18847,182.23 |
| 12586 | | |
| 12587 | | > view matrix models |
| 12588 | | > #26,-0.34302,0.054922,-0.93772,375.79,0.93822,0.068485,-0.3392,552.15,0.04559,-0.99614,-0.075021,232.68 |
| 12589 | | |
| 12590 | | > view matrix models |
| 12591 | | > #26,-0.044818,0.28108,-0.95864,317.48,0.99878,0.032376,-0.037202,513.95,0.02058,-0.95914,-0.28219,255.54 |
| 12592 | | |
| 12593 | | > view matrix models |
| 12594 | | > #26,0.97922,-0.0934,-0.18,154.39,0.048241,0.96943,-0.24058,533.61,0.19697,0.2269,0.95379,-52.037 |
| 12595 | | |
| 12596 | | > view matrix models |
| 12597 | | > #26,0.7558,-0.32714,-0.56723,253.32,0.39406,0.91907,-0.005006,472.67,0.52297,-0.21974,0.82354,-20.201 |
| 12598 | | |
| 12599 | | > view matrix models |
| 12600 | | > #26,0.49746,0.46252,-0.73389,207.89,-0.11953,0.87448,0.4701,480.05,0.85921,-0.14614,0.49031,-27.722 |
| 12601 | | |
| 12602 | | > view matrix models |
| 12603 | | > #26,0.53292,0.77579,-0.33785,119.69,-0.8442,0.51463,-0.14993,678.27,0.057552,0.36511,0.92918,-49.863 |
| 12604 | | |
| 12605 | | > view matrix models |
| 12606 | | > #26,0.39221,0.91279,-0.11396,92.824,-0.90758,0.40417,0.11377,667.52,0.1499,0.058805,0.98695,-30.539 |
| 12607 | | |
| 12608 | | > show #14 models |
| 12609 | | |
| 12610 | | > hide #14 models |
| 12611 | | |
| 12612 | | > show #14 models |
| 12613 | | |
| 12614 | | > show #!2 models |
| 12615 | | |
| 12616 | | > hide #!24 models |
| 12617 | | |
| 12618 | | > show #!24 models |
| 12619 | | |
| 12620 | | > show #5 models |
| 12621 | | |
| 12622 | | > hide #5 models |
| 12623 | | |
| 12624 | | > show #5 models |
| 12625 | | |
| 12626 | | > hide #5 models |
| 12627 | | |
| 12628 | | > hide #14 models |
| 12629 | | |
| 12630 | | > ui mousemode right "translate selected models" |
| 12631 | | |
| 12632 | | > view matrix models |
| 12633 | | > #26,0.39221,0.91279,-0.11396,-11.208,-0.90758,0.40417,0.11377,640.17,0.1499,0.058805,0.98695,-91.938 |
| 12634 | | |
| 12635 | | > view matrix models |
| 12636 | | > #26,0.39221,0.91279,-0.11396,-27.887,-0.90758,0.40417,0.11377,602.33,0.1499,0.058805,0.98695,-95.765 |
| 12637 | | |
| 12638 | | > ui mousemode right "rotate selected models" |
| 12639 | | |
| 12640 | | > view matrix models |
| 12641 | | > #26,0.49159,0.86948,-0.048413,-41.7,-0.86875,0.48582,-0.096179,612.96,-0.060106,0.08934,0.99419,-76.494 |
| 12642 | | |
| 12643 | | > view matrix models |
| 12644 | | > #26,0.63015,0.72034,-0.28988,-11.061,-0.77523,0.56251,-0.2874,615.78,-0.043966,0.40583,0.91289,-106.54 |
| 12645 | | |
| 12646 | | > view matrix models |
| 12647 | | > #26,0.18166,0.81837,-0.54522,58.138,-0.93619,-0.02574,-0.35055,711.75,-0.30092,0.57411,0.76147,-79.684 |
| 12648 | | |
| 12649 | | > view matrix models |
| 12650 | | > #26,-0.065015,0.73106,-0.67921,112.31,-0.88132,-0.36131,-0.30453,740.19,-0.46803,0.5788,0.66778,-50.267 |
| 12651 | | |
| 12652 | | > view matrix models |
| 12653 | | > #26,0.76476,-0.62586,-0.15307,118.4,0.61006,0.62695,0.48452,360.14,-0.20728,-0.46393,0.86128,21.961 |
| 12654 | | |
| 12655 | | > view matrix models |
| 12656 | | > #26,0.53158,-0.80095,-0.2755,180.17,0.7559,0.30184,0.58096,371.1,-0.38216,-0.51707,0.76589,59.368 |
| 12657 | | |
| 12658 | | > view matrix models |
| 12659 | | > #26,0.22358,-0.68272,-0.69564,250.5,0.91149,0.39925,-0.098881,422.09,0.34524,-0.61196,0.71156,-5.2251 |
| 12660 | | |
| 12661 | | > view matrix models |
| 12662 | | > #26,-0.10881,-0.70329,-0.70252,291.4,0.707,0.44205,-0.55204,493.62,0.6988,-0.55675,0.44913,-20.868 |
| 12663 | | |
| 12664 | | > view matrix models |
| 12665 | | > #26,0.16701,0.038305,-0.98521,204.94,0.17251,0.9827,0.067452,416.4,0.97075,-0.18123,0.15751,-62.097 |
| 12666 | | |
| 12667 | | > view matrix models |
| 12668 | | > #26,0.71839,0.024035,-0.69522,109.99,0.069176,0.99198,0.10578,422.47,0.69219,-0.12408,0.71097,-102.72 |
| 12669 | | |
| 12670 | | > view matrix models |
| 12671 | | > #26,0.51369,-0.58015,-0.6321,197.9,0.73544,0.67717,-0.023849,399.96,0.44187,-0.45262,0.77452,-42.636 |
| 12672 | | |
| 12673 | | > view matrix models |
| 12674 | | > #26,0.6187,-0.68507,-0.38457,169.33,0.69559,0.70522,-0.1372,414.5,0.3652,-0.18262,0.91284,-82.543 |
| 12675 | | |
| 12676 | | > view matrix models |
| 12677 | | > #26,0.80188,-0.18928,-0.56671,110.86,0.10444,0.9783,-0.17897,453.72,0.58828,0.084321,0.80425,-126.87 |
| 12678 | | |
| 12679 | | > ui mousemode right "translate selected models" |
| 12680 | | |
| 12681 | | > view matrix models |
| 12682 | | > #26,0.80188,-0.18928,-0.56671,236.45,0.10444,0.9783,-0.17897,319.92,0.58828,0.084321,0.80425,-22.749 |
| 12683 | | |
| 12684 | | > view matrix models |
| 12685 | | > #26,0.80188,-0.18928,-0.56671,242.7,0.10444,0.9783,-0.17897,300.28,0.58828,0.084321,0.80425,29.395 |
| 12686 | | |
| 12687 | | > view matrix models |
| 12688 | | > #26,0.80188,-0.18928,-0.56671,191.08,0.10444,0.9783,-0.17897,321.71,0.58828,0.084321,0.80425,90.841 |
| 12689 | | |
| 12690 | | > view matrix models |
| 12691 | | > #26,0.80188,-0.18928,-0.56671,182.54,0.10444,0.9783,-0.17897,326.98,0.58828,0.084321,0.80425,80.916 |
| 12692 | | |
| 12693 | | > view matrix models |
| 12694 | | > #26,0.80188,-0.18928,-0.56671,182.69,0.10444,0.9783,-0.17897,327.89,0.58828,0.084321,0.80425,80.843 |
| 12695 | | |
| 12696 | | > fitmap #26 inMap #22 |
| 12697 | | |
| 12698 | | Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage4_postprocess.mrc |
| 12699 | | using 93502 points |
| 12700 | | correlation = 0.8191, correlation about mean = 0.04296, overlap = 7085 |
| 12701 | | steps = 180, shift = 57.1, angle = 36.5 degrees |
| 12702 | | |
| 12703 | | Position of emd_3720_2017_leaf.map (#26) relative to |
| 12704 | | COPI_golph_linkage4_postprocess.mrc (#22) coordinates: |
| 12705 | | Matrix rotation and translation |
| 12706 | | -0.93252958 0.26581440 -0.24439980 437.12443068 |
| 12707 | | -0.18450015 -0.93256337 -0.31029862 395.49279816 |
| 12708 | | -0.31040014 -0.24427084 0.91868574 266.69578048 |
| 12709 | | Axis 0.14357295 0.14351329 -0.97917861 |
| 12710 | | Axis point 262.85810028 190.06906788 -0.00000000 |
| 12711 | | Rotation angle (degrees) 166.70616314 |
| 12712 | | Shift along axis -141.62508659 |
| 12713 | | |
| 12714 | | |
| 12715 | | > view matrix models |
| 12716 | | > #26,0.94986,0.12444,-0.28683,108.02,-0.0097878,0.92877,0.37052,253.1,0.31251,-0.34913,0.88343,168.61 |
| 12717 | | |
| 12718 | | > view matrix models |
| 12719 | | > #26,0.94986,0.12444,-0.28683,99.574,-0.0097878,0.92877,0.37052,228.44,0.31251,-0.34913,0.88343,163.46 |
| 12720 | | |
| 12721 | | > fitmap #26 inMap #22 |
| 12722 | | |
| 12723 | | Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage4_postprocess.mrc |
| 12724 | | using 93502 points |
| 12725 | | correlation = 0.8192, correlation about mean = 0.04309, overlap = 7085 |
| 12726 | | steps = 180, shift = 53.5, angle = 0.044 degrees |
| 12727 | | |
| 12728 | | Position of emd_3720_2017_leaf.map (#26) relative to |
| 12729 | | COPI_golph_linkage4_postprocess.mrc (#22) coordinates: |
| 12730 | | Matrix rotation and translation |
| 12731 | | -0.93270694 0.26582143 -0.24371438 437.05105992 |
| 12732 | | -0.18476560 -0.93258596 -0.31007271 395.52547842 |
| 12733 | | -0.30970858 -0.24417694 0.91894407 266.51240542 |
| 12734 | | Axis 0.14320899 0.14342291 -0.97924515 |
| 12735 | | Axis point 262.77060575 190.05227553 0.00000000 |
| 12736 | | Rotation angle (degrees) 166.69889182 |
| 12737 | | Shift along axis -141.66392298 |
| 12738 | | |
| 12739 | | |
| 12740 | | > view matrix models |
| 12741 | | > #26,0.94965,0.12438,-0.28757,108.3,-0.0094766,0.92881,0.37044,287.59,0.31317,-0.34906,0.88322,198.4 |
| 12742 | | |
| 12743 | | > ui mousemode right "rotate selected models" |
| 12744 | | |
| 12745 | | > view matrix models |
| 12746 | | > #26,0.98636,-0.009641,-0.16433,105.6,0.013796,0.99961,0.024164,317.38,0.16403,-0.026101,0.98611,164.55 |
| 12747 | | |
| 12748 | | > view matrix models |
| 12749 | | > #26,0.90223,0.27722,-0.33034,100.45,0.0083559,0.75463,0.6561,272.67,0.43116,-0.59471,0.67854,238.56 |
| 12750 | | |
| 12751 | | > view matrix models |
| 12752 | | > #26,0.97795,0.18433,-0.098135,75.567,-0.19537,0.97357,-0.11826,360.98,0.073742,0.13483,0.98812,155.31 |
| 12753 | | |
| 12754 | | > view matrix models |
| 12755 | | > #26,0.98831,-0.084837,-0.12669,109.93,0.13292,0.88649,0.44324,267.94,0.074706,-0.4549,0.8874,237.55 |
| 12756 | | |
| 12757 | | > view matrix models |
| 12758 | | > #26,0.45356,0.16623,-0.87559,228.87,0.63581,0.6281,0.4486,241.25,0.62452,-0.76017,0.17919,295.38 |
| 12759 | | |
| 12760 | | > view matrix models |
| 12761 | | > #26,0.48239,0.19903,-0.85305,219.02,0.62258,0.60715,0.49372,239.92,0.6162,-0.76925,0.16897,298.62 |
| 12762 | | |
| 12763 | | > view matrix models |
| 12764 | | > #26,0.39996,0.17569,-0.89954,236.63,0.65873,0.62731,0.41541,242.67,0.63727,-0.7587,0.13517,298.96 |
| 12765 | | |
| 12766 | | > ui mousemode right "translate selected models" |
| 12767 | | |
| 12768 | | > view matrix models |
| 12769 | | > #26,0.39996,0.17569,-0.89954,220.75,0.65873,0.62731,0.41541,229.35,0.63727,-0.7587,0.13517,271.21 |
| 12770 | | |
| 12771 | | > view matrix models |
| 12772 | | > #26,0.39996,0.17569,-0.89954,223.18,0.65873,0.62731,0.41541,415.04,0.63727,-0.7587,0.13517,169.51 |
| 12773 | | |
| 12774 | | > view matrix models |
| 12775 | | > #26,0.39996,0.17569,-0.89954,222.24,0.65873,0.62731,0.41541,222.72,0.63727,-0.7587,0.13517,282.19 |
| 12776 | | |
| 12777 | | > show #!25 models |
| 12778 | | |
| 12779 | | > hide #!24 models |
| 12780 | | |
| 12781 | | > view matrix models |
| 12782 | | > #26,0.39996,0.17569,-0.89954,250.7,0.65873,0.62731,0.41541,297.87,0.63727,-0.7587,0.13517,290.12 |
| 12783 | | |
| 12784 | | > ui mousemode right "rotate selected models" |
| 12785 | | |
| 12786 | | > view matrix models |
| 12787 | | > #26,0.72297,0.092659,-0.68464,198.69,0.36577,0.78936,0.49308,302.5,0.58611,-0.6069,0.53679,230.36 |
| 12788 | | |
| 12789 | | > view matrix models |
| 12790 | | > #26,0.94252,-0.0065676,-0.33407,144.31,0.14611,0.90725,0.39439,324.93,0.3005,-0.42053,0.85607,202.74 |
| 12791 | | |
| 12792 | | > view matrix models |
| 12793 | | > #26,0.75485,0.21363,-0.62013,173.01,0.41313,0.57948,0.70251,297.49,0.50943,-0.78649,0.34916,282.65 |
| 12794 | | |
| 12795 | | > view matrix models |
| 12796 | | > #26,0.7639,0.072934,-0.6412,191.29,-0.0057774,0.99433,0.10622,365.74,0.64531,-0.077434,0.75998,134.05 |
| 12797 | | |
| 12798 | | > view matrix models |
| 12799 | | > #26,0.84667,0.53025,-0.044432,56.829,-0.42374,0.72239,0.54644,393.58,0.32185,-0.44383,0.83632,205.44 |
| 12800 | | |
| 12801 | | > view matrix models |
| 12802 | | > #26,0.78791,0.55369,-0.26947,87.245,-0.29707,0.7251,0.62128,370.08,0.53939,-0.40946,0.7358,188.57 |
| 12803 | | |
| 12804 | | > show #!24 models |
| 12805 | | |
| 12806 | | > view matrix models |
| 12807 | | > #26,0.69494,0.52906,-0.48699,126.39,-0.14795,0.76796,0.62318,347.85,0.70368,-0.36102,0.61196,178.8 |
| 12808 | | |
| 12809 | | > view matrix models |
| 12810 | | > #26,0.57492,0.81224,0.098684,37.007,-0.81802,0.56796,0.090909,510.43,0.017791,-0.13299,0.99096,184.46 |
| 12811 | | |
| 12812 | | > view matrix models |
| 12813 | | > #26,0.66417,0.74742,0.015822,44.43,-0.7138,0.62772,0.31058,465.57,0.2222,-0.21757,0.95042,176.21 |
| 12814 | | |
| 12815 | | > ui mousemode right "translate selected models" |
| 12816 | | |
| 12817 | | > view matrix models |
| 12818 | | > #26,0.66417,0.74742,0.015822,60.06,-0.7138,0.62772,0.31058,450.95,0.2222,-0.21757,0.95042,177.54 |
| 12819 | | |
| 12820 | | > view matrix models |
| 12821 | | > #26,0.66417,0.74742,0.015822,62.679,-0.7138,0.62772,0.31058,438.29,0.2222,-0.21757,0.95042,184.42 |
| 12822 | | |
| 12823 | | > ui mousemode right "rotate selected models" |
| 12824 | | |
| 12825 | | > view matrix models |
| 12826 | | > #26,0.62092,0.68679,-0.37785,121.29,-0.56834,0.72642,0.3864,401.08,0.53985,-0.025178,0.84138,138.34 |
| 12827 | | |
| 12828 | | > view matrix models |
| 12829 | | > #26,0.50831,0.32462,-0.79765,226.87,-0.54067,0.84123,-0.0021948,430.1,0.6703,0.43238,0.60312,97.032 |
| 12830 | | |
| 12831 | | > view matrix models |
| 12832 | | > #26,0.4757,0.28143,-0.83337,239.93,-0.52107,0.85346,-0.0092249,427.25,0.70865,0.43863,0.55264,97.902 |
| 12833 | | |
| 12834 | | > view matrix models |
| 12835 | | > #26,0.23458,0.15317,-0.95995,297.49,-0.34217,0.93732,0.065949,388.1,0.90989,0.31299,0.27229,123.23 |
| 12836 | | |
| 12837 | | > view matrix models |
| 12838 | | > #26,0.67714,0.59448,-0.43368,132.54,-0.70882,0.36868,-0.60137,576.33,-0.19761,0.71461,0.67103,153.54 |
| 12839 | | |
| 12840 | | > view matrix models |
| 12841 | | > #26,0.30651,0.95186,-0.0026574,80.92,-0.47629,0.15095,-0.86624,607.28,-0.82414,0.26678,0.49963,298.21 |
| 12842 | | |
| 12843 | | > view matrix models |
| 12844 | | > #26,-0.90777,0.31468,0.27735,261.46,-0.3425,-0.93779,-0.056967,626.69,0.24217,-0.14671,0.95908,172.67 |
| 12845 | | |
| 12846 | | > view matrix models |
| 12847 | | > #26,-0.95054,0.092395,-0.29655,360.61,-0.24645,-0.80546,0.53897,529.66,-0.18907,0.5854,0.78839,154.16 |
| 12848 | | |
| 12849 | | > view matrix models |
| 12850 | | > #26,-0.64685,0.23093,-0.72681,360.46,-0.24434,-0.96557,-0.089336,622.72,-0.72242,0.1198,0.681,282.85 |
| 12851 | | |
| 12852 | | > view matrix models |
| 12853 | | > #26,-0.45956,0.76938,-0.44369,241.51,-0.40389,-0.62596,-0.66711,668.41,-0.79099,-0.12738,0.59842,329.89 |
| 12854 | | |
| 12855 | | > view matrix models |
| 12856 | | > #26,-0.98818,-0.1014,0.11501,339.44,0.007034,-0.77928,-0.62664,635.43,0.15316,-0.61842,0.77078,261.33 |
| 12857 | | |
| 12858 | | > view matrix models |
| 12859 | | > #26,-0.80115,-0.57571,-0.16347,407.81,0.35468,-0.67675,0.64514,433.7,-0.48204,0.45887,0.74637,207.41 |
| 12860 | | |
| 12861 | | > view matrix models |
| 12862 | | > #26,0.028152,-0.34522,-0.9381,377.83,0.081628,-0.93454,0.34636,530.68,-0.99627,-0.086326,0.0018701,418.64 |
| 12863 | | |
| 12864 | | > view matrix models |
| 12865 | | > #26,-0.59574,-0.59267,-0.54207,431.28,0.62167,-0.76759,0.15602,472.07,-0.50855,-0.24404,0.82573,285.02 |
| 12866 | | |
| 12867 | | > view matrix models |
| 12868 | | > #26,-0.55578,-0.14471,-0.81864,405.88,0.63036,-0.71536,-0.3015,518.85,-0.54199,-0.68361,0.4888,381.1 |
| 12869 | | |
| 12870 | | > view matrix models |
| 12871 | | > #26,-0.27457,-0.89244,-0.35801,409.01,0.89272,-0.37493,0.24996,383.38,-0.3573,-0.25097,0.89964,260 |
| 12872 | | |
| 12873 | | > view matrix models |
| 12874 | | > #26,-0.25988,-0.85719,-0.44462,413.36,0.87504,-0.40377,0.26698,386.82,-0.40838,-0.31968,0.855,279.27 |
| 12875 | | |
| 12876 | | > view matrix models |
| 12877 | | > #26,-0.27306,-0.90879,-0.31552,405.77,0.89632,-0.35945,0.25962,379.98,-0.34935,-0.21191,0.91272,252.89 |
| 12878 | | |
| 12879 | | > view matrix models |
| 12880 | | > #26,-0.2585,-0.94035,-0.22116,396.76,0.90227,-0.31682,0.29247,370.34,-0.34509,-0.12394,0.93035,239.82 |
| 12881 | | |
| 12882 | | > ui mousemode right "translate selected models" |
| 12883 | | |
| 12884 | | > view matrix models |
| 12885 | | > #26,-0.2585,-0.94035,-0.22116,378.78,0.90227,-0.31682,0.29247,361.51,-0.34509,-0.12394,0.93035,233.92 |
| 12886 | | |
| 12887 | | > view matrix models |
| 12888 | | > #26,-0.2585,-0.94035,-0.22116,395.2,0.90227,-0.31682,0.29247,535.16,-0.34509,-0.12394,0.93035,46.461 |
| 12889 | | |
| 12890 | | > view matrix models |
| 12891 | | > #26,-0.2585,-0.94035,-0.22116,429.09,0.90227,-0.31682,0.29247,603.62,-0.34509,-0.12394,0.93035,61.304 |
| 12892 | | |
| 12893 | | > view matrix models |
| 12894 | | > #26,-0.2585,-0.94035,-0.22116,377.36,0.90227,-0.31682,0.29247,554.14,-0.34509,-0.12394,0.93035,21.232 |
| 12895 | | |
| 12896 | | > view matrix models |
| 12897 | | > #26,-0.2585,-0.94035,-0.22116,358.41,0.90227,-0.31682,0.29247,559.46,-0.34509,-0.12394,0.93035,-0.86888 |
| 12898 | | |
| 12899 | | > ui mousemode right "rotate selected models" |
| 12900 | | |
| 12901 | | > view matrix models |
| 12902 | | > #26,-0.2358,-0.91371,-0.33095,365.62,0.8913,-0.33905,0.30104,562.34,-0.38727,-0.22399,0.89434,20.11 |
| 12903 | | |
| 12904 | | > view matrix models |
| 12905 | | > #26,-0.21257,-0.40815,-0.88782,368.32,0.91596,-0.3997,-0.035558,606.53,-0.34035,-0.82076,0.45881,137.51 |
| 12906 | | |
| 12907 | | > view matrix models |
| 12908 | | > #26,-0.73074,0.45324,-0.51048,279.51,-0.51806,-0.85516,-0.017677,821.18,-0.44456,0.25154,0.85971,-26.133 |
| 12909 | | |
| 12910 | | > view matrix models |
| 12911 | | > #26,-0.36839,0.55336,-0.74705,254.46,-0.58202,-0.76388,-0.27881,848.34,-0.72494,0.33208,0.60347,26.231 |
| 12912 | | |
| 12913 | | > view matrix models |
| 12914 | | > #26,-0.59807,0.34857,-0.72168,301.93,-0.58645,-0.80408,0.097626,809.2,-0.54626,0.48161,0.68531,-21.524 |
| 12915 | | |
| 12916 | | > ui mousemode right "translate selected models" |
| 12917 | | |
| 12918 | | > view matrix models |
| 12919 | | > #26,-0.59807,0.34857,-0.72168,391.36,-0.58645,-0.80408,0.097626,575.05,-0.54626,0.48161,0.68531,148.98 |
| 12920 | | |
| 12921 | | > view matrix models |
| 12922 | | > #26,-0.59807,0.34857,-0.72168,361.82,-0.58645,-0.80408,0.097626,532.94,-0.54626,0.48161,0.68531,200.94 |
| 12923 | | |
| 12924 | | > view matrix models |
| 12925 | | > #26,-0.59807,0.34857,-0.72168,356.4,-0.58645,-0.80408,0.097626,558.7,-0.54626,0.48161,0.68531,176.41 |
| 12926 | | |
| 12927 | | > view matrix models |
| 12928 | | > #26,-0.59807,0.34857,-0.72168,368.66,-0.58645,-0.80408,0.097626,557.25,-0.54626,0.48161,0.68531,214.27 |
| 12929 | | |
| 12930 | | > view matrix models |
| 12931 | | > #26,-0.59807,0.34857,-0.72168,320.04,-0.58645,-0.80408,0.097626,573.85,-0.54626,0.48161,0.68531,204.67 |
| 12932 | | |
| 12933 | | > view matrix models |
| 12934 | | > #26,-0.59807,0.34857,-0.72168,318.61,-0.58645,-0.80408,0.097626,590.51,-0.54626,0.48161,0.68531,205.24 |
| 12935 | | |
| 12936 | | > view matrix models |
| 12937 | | > #26,-0.59807,0.34857,-0.72168,312.51,-0.58645,-0.80408,0.097626,585.13,-0.54626,0.48161,0.68531,203.51 |
| 12938 | | |
| 12939 | | > view matrix models |
| 12940 | | > #26,-0.59807,0.34857,-0.72168,312.1,-0.58645,-0.80408,0.097626,578.25,-0.54626,0.48161,0.68531,215.8 |
| 12941 | | |
| 12942 | | > hide #!2 models |
| 12943 | | |
| 12944 | | > hide #!25 models |
| 12945 | | |
| 12946 | | > view matrix models |
| 12947 | | > #26,-0.59807,0.34857,-0.72168,312.84,-0.58645,-0.80408,0.097626,591.21,-0.54626,0.48161,0.68531,214.33 |
| 12948 | | |
| 12949 | | > ui mousemode right "rotate selected models" |
| 12950 | | |
| 12951 | | > view matrix models |
| 12952 | | > #26,-0.62408,0.41993,-0.65893,299.85,-0.5729,-0.81937,0.020419,600.62,-0.53133,0.39024,0.75193,215.69 |
| 12953 | | |
| 12954 | | > view matrix models |
| 12955 | | > #26,-0.63461,0.48084,-0.60504,287.4,-0.76945,-0.3199,0.55282,500.34,0.072262,0.81637,0.573,117.57 |
| 12956 | | |
| 12957 | | > view matrix models |
| 12958 | | > #26,-0.63776,0.48805,-0.59588,285.82,-0.76503,-0.31164,0.56356,497.59,0.089345,0.81528,0.57213,115.87 |
| 12959 | | |
| 12960 | | > ui mousemode right "translate selected models" |
| 12961 | | |
| 12962 | | > view matrix models |
| 12963 | | > #26,-0.63776,0.48805,-0.59588,227.16,-0.76503,-0.31164,0.56356,692.79,0.089345,0.81528,0.57213,2.3047 |
| 12964 | | |
| 12965 | | > hide #!24 models |
| 12966 | | |
| 12967 | | > show #!24 models |
| 12968 | | |
| 12969 | | > show #!25 models |
| 12970 | | |
| 12971 | | > hide #!25 models |
| 12972 | | |
| 12973 | | > show #!25 models |
| 12974 | | |
| 12975 | | > ui mousemode right "rotate selected models" |
| 12976 | | |
| 12977 | | > view matrix models |
| 12978 | | > #26,-0.65811,0.75193,0.038762,123.02,-0.69008,-0.62297,0.36838,744.55,0.30114,0.21568,0.92887,7.8591 |
| 12979 | | |
| 12980 | | > view matrix models |
| 12981 | | > #26,0.64657,0.73269,-0.21242,7.2717,-0.13939,0.38723,0.91138,497.41,0.75002,-0.55966,0.3525,117.72 |
| 12982 | | |
| 12983 | | > view matrix models |
| 12984 | | > #26,0.87638,0.30024,-0.37658,52.303,-0.25871,0.95299,0.15774,532.28,0.40624,-0.040819,0.91286,28.499 |
| 12985 | | |
| 12986 | | > view matrix models |
| 12987 | | > #26,0.96603,-0.20024,-0.16339,76.788,0.24354,0.9169,0.31619,461.03,0.086499,-0.34524,0.93452,98.51 |
| 12988 | | |
| 12989 | | > view matrix models |
| 12990 | | > #26,0.62093,-0.18719,-0.76119,184.86,0.56613,0.77874,0.27031,446.44,0.54216,-0.59877,0.58951,117.95 |
| 12991 | | |
| 12992 | | > view matrix models |
| 12993 | | > #26,0.62142,0.048735,-0.78196,159.07,0.36972,0.8617,0.34752,449.64,0.69075,-0.50507,0.51746,98.434 |
| 12994 | | |
| 12995 | | > ui mousemode right "translate selected models" |
| 12996 | | |
| 12997 | | > view matrix models |
| 12998 | | > #26,0.62142,0.048735,-0.78196,178.93,0.36972,0.8617,0.34752,255.45,0.69075,-0.50507,0.51746,215.24 |
| 12999 | | |
| 13000 | | > view matrix models |
| 13001 | | > #26,0.62142,0.048735,-0.78196,178.44,0.36972,0.8617,0.34752,250.07,0.69075,-0.50507,0.51746,184.98 |
| 13002 | | |
| 13003 | | > view matrix models |
| 13004 | | > #26,0.62142,0.048735,-0.78196,186.12,0.36972,0.8617,0.34752,252.09,0.69075,-0.50507,0.51746,191.86 |
| 13005 | | |
| 13006 | | > view matrix models |
| 13007 | | > #26,0.62142,0.048735,-0.78196,178.97,0.36972,0.8617,0.34752,238.6,0.69075,-0.50507,0.51746,178.28 |
| 13008 | | |
| 13009 | | > view matrix models |
| 13010 | | > #26,0.62142,0.048735,-0.78196,181.67,0.36972,0.8617,0.34752,243.68,0.69075,-0.50507,0.51746,183.36 |
| 13011 | | |
| 13012 | | > view matrix models |
| 13013 | | > #26,0.62142,0.048735,-0.78196,188,0.36972,0.8617,0.34752,242.78,0.69075,-0.50507,0.51746,190.9 |
| 13014 | | |
| 13015 | | > view matrix models |
| 13016 | | > #26,0.62142,0.048735,-0.78196,181.45,0.36972,0.8617,0.34752,464.58,0.69075,-0.50507,0.51746,12.856 |
| 13017 | | |
| 13018 | | > view matrix models |
| 13019 | | > #26,0.62142,0.048735,-0.78196,166.35,0.36972,0.8617,0.34752,436.96,0.69075,-0.50507,0.51746,19.663 |
| 13020 | | |
| 13021 | | > ui mousemode right "rotate selected models" |
| 13022 | | |
| 13023 | | > view matrix models |
| 13024 | | > #26,0.54567,0.45958,-0.70074,116.25,-0.17903,0.88083,0.43828,486.09,0.81865,-0.11371,0.56292,-46.942 |
| 13025 | | |
| 13026 | | > view matrix models |
| 13027 | | > #26,0.7665,0.32532,-0.55375,89.944,-0.045829,0.88772,0.45809,467.85,0.6406,-0.32575,0.69535,-17.084 |
| 13028 | | |
| 13029 | | > view matrix models |
| 13030 | | > #26,-0.87301,-0.22576,-0.43231,327.05,-0.48636,0.33712,0.80611,542.42,-0.036249,0.91399,-0.4041,41.196 |
| 13031 | | |
| 13032 | | > show #!2 models |
| 13033 | | |
| 13034 | | > ui mousemode right "translate selected models" |
| 13035 | | |
| 13036 | | > ui mousemode right "rotate selected models" |
| 13037 | | |
| 13038 | | > view matrix models |
| 13039 | | > #26,-0.93178,-0.35392,0.080729,288.46,0.020776,0.17003,0.98522,483.83,-0.36242,0.91969,-0.15108,47.57 |
| 13040 | | |
| 13041 | | > view matrix models |
| 13042 | | > #26,-0.8114,-0.20862,-0.546,331.45,-0.58143,0.38366,0.71746,558.09,0.059797,0.8996,-0.4326,35.407 |
| 13043 | | |
| 13044 | | > view matrix models |
| 13045 | | > #26,-0.9453,-0.28424,-0.16007,310.08,-0.23189,0.2404,0.94257,509.06,-0.22943,0.92812,-0.29316,48.281 |
| 13046 | | |
| 13047 | | > view matrix models |
| 13048 | | > #26,-0.83291,-0.21342,-0.5106,330.28,-0.55266,0.36871,0.74741,553.08,0.02875,0.90471,-0.42505,37.419 |
| 13049 | | |
| 13050 | | > view matrix models |
| 13051 | | > #26,-0.78517,-0.204,-0.58471,332.5,-0.61194,0.40054,0.68198,563.71,0.09507,0.89328,-0.43933,32.963 |
| 13052 | | |
| 13053 | | > view matrix models |
| 13054 | | > #26,-0.68822,0.44367,-0.57403,242.88,-0.67297,-0.68599,0.27664,748.29,-0.27105,0.5767,0.77069,-30.601 |
| 13055 | | |
| 13056 | | > view matrix models |
| 13057 | | > #26,-0.80555,0.23125,-0.54554,278.18,-0.45282,-0.83407,0.31509,736.52,-0.38215,0.50085,0.7766,-9.6594 |
| 13058 | | |
| 13059 | | > ui mousemode right "translate selected models" |
| 13060 | | |
| 13061 | | > view matrix models |
| 13062 | | > #26,-0.80555,0.23125,-0.54554,406.6,-0.45282,-0.83407,0.31509,506.62,-0.38215,0.50085,0.7766,109.41 |
| 13063 | | |
| 13064 | | > view matrix models |
| 13065 | | > #26,-0.80555,0.23125,-0.54554,340.76,-0.45282,-0.83407,0.31509,529.94,-0.38215,0.50085,0.7766,184.06 |
| 13066 | | |
| 13067 | | > view matrix models |
| 13068 | | > #26,-0.80555,0.23125,-0.54554,370.8,-0.45282,-0.83407,0.31509,551.4,-0.38215,0.50085,0.7766,188.66 |
| 13069 | | |
| 13070 | | > ui mousemode right "rotate selected models" |
| 13071 | | |
| 13072 | | > view matrix models |
| 13073 | | > #26,-0.86554,0.34384,-0.36416,342.73,-0.3952,-0.91554,0.074845,582.97,-0.30766,0.20869,0.92833,197.22 |
| 13074 | | |
| 13075 | | > view matrix models |
| 13076 | | > #26,-0.57435,-0.048218,-0.81719,410.09,-0.54075,-0.72712,0.42296,535.84,-0.61459,0.68482,0.39155,238.45 |
| 13077 | | |
| 13078 | | > view matrix models |
| 13079 | | > #26,-0.58147,0.72857,0.36205,178.88,-0.67902,-0.67973,0.27732,563.02,0.44814,-0.084588,0.88995,151.24 |
| 13080 | | |
| 13081 | | > view matrix models |
| 13082 | | > #26,-0.45583,0.77778,-0.43275,252.6,-0.84755,-0.52777,-0.055811,603.27,-0.2718,0.34134,0.89978,180.69 |
| 13083 | | |
| 13084 | | > view matrix models |
| 13085 | | > #26,-0.56126,0.73968,0.3713,174.17,-0.82748,-0.49272,-0.26928,622,-0.016233,-0.45837,0.88861,248.62 |
| 13086 | | |
| 13087 | | > view matrix models |
| 13088 | | > #26,-0.39826,0.79346,-0.46023,247.45,-0.9024,-0.42891,0.041432,586.18,-0.16452,0.43181,0.88683,159.26 |
| 13089 | | |
| 13090 | | > view matrix models |
| 13091 | | > #26,-0.3309,0.18376,-0.9256,367.61,-0.94159,0.0006637,0.33675,504.43,0.062497,0.98297,0.17281,151.99 |
| 13092 | | |
| 13093 | | > view matrix models |
| 13094 | | > #26,0.013316,0.99308,-0.11664,136.45,-0.84079,0.074259,0.53625,460.68,0.5412,0.090931,0.83596,126.1 |
| 13095 | | |
| 13096 | | > view matrix models |
| 13097 | | > #26,0.10532,0.98267,0.15251,95.505,-0.72568,-0.028914,0.68742,442.13,0.67992,-0.18307,0.71006,158 |
| 13098 | | |
| 13099 | | > view matrix models |
| 13100 | | > #26,0.15571,0.98292,0.098089,96.195,-0.91903,0.10775,0.37918,484.08,0.36214,-0.14919,0.92011,165.13 |
| 13101 | | |
| 13102 | | > view matrix models |
| 13103 | | > #26,0.018866,0.74254,-0.66953,231.02,-0.93228,0.25502,0.25655,482.46,0.36124,0.61935,0.69707,99.734 |
| 13104 | | |
| 13105 | | > view matrix models |
| 13106 | | > #26,0.33265,0.91006,0.24723,67.264,-0.82541,0.15418,0.54307,448.59,0.45611,-0.38472,0.80247,196.52 |
| 13107 | | |
| 13108 | | > view matrix models |
| 13109 | | > #26,0.31892,0.9244,0.20922,71.593,-0.82434,0.16161,0.54253,447.64,0.46771,-0.34549,0.81356,189.21 |
| 13110 | | |
| 13111 | | > ui mousemode right "translate selected models" |
| 13112 | | |
| 13113 | | > view matrix models |
| 13114 | | > #26,0.31892,0.9244,0.20922,90.128,-0.82434,0.16161,0.54253,444.09,0.46771,-0.34549,0.81356,194.9 |
| 13115 | | |
| 13116 | | > view matrix models |
| 13117 | | > #26,0.31892,0.9244,0.20922,73.346,-0.82434,0.16161,0.54253,453.64,0.46771,-0.34549,0.81356,188.67 |
| 13118 | | |
| 13119 | | > view matrix models |
| 13120 | | > #26,0.31892,0.9244,0.20922,46.838,-0.82434,0.16161,0.54253,446.35,0.46771,-0.34549,0.81356,203.89 |
| 13121 | | |
| 13122 | | > view matrix models |
| 13123 | | > #26,0.31892,0.9244,0.20922,84.565,-0.82434,0.16161,0.54253,459.95,0.46771,-0.34549,0.81356,199.98 |
| 13124 | | |
| 13125 | | > view matrix models |
| 13126 | | > #26,0.31892,0.9244,0.20922,66.802,-0.82434,0.16161,0.54253,459.73,0.46771,-0.34549,0.81356,198.58 |
| 13127 | | |
| 13128 | | > ui mousemode right "rotate selected models" |
| 13129 | | |
| 13130 | | > view matrix models |
| 13131 | | > #26,-0.097853,0.95756,-0.27113,166.72,-0.93201,0.0073568,0.36236,511.62,0.34897,0.28815,0.89173,127.08 |
| 13132 | | |
| 13133 | | > view matrix models |
| 13134 | | > #26,-0.11013,0.98108,-0.15921,152.09,-0.92073,-0.040374,0.38811,513.01,0.37434,0.18933,0.90775,134.13 |
| 13135 | | |
| 13136 | | > hide #!25 models |
| 13137 | | |
| 13138 | | > hide #!2 models |
| 13139 | | |
| 13140 | | > view matrix models |
| 13141 | | > #26,-0.13278,0.99067,0.030754,131.09,-0.73407,-0.11915,0.66854,468.19,0.66597,0.066196,0.74304,135.27 |
| 13142 | | |
| 13143 | | > view matrix models |
| 13144 | | > #26,-0.17767,0.76886,-0.61423,238.81,-0.97125,-0.036499,0.23526,536.31,0.15846,0.63837,0.75324,123.15 |
| 13145 | | |
| 13146 | | > view matrix models |
| 13147 | | > #26,-0.098417,0.66235,-0.74271,257.73,-0.99477,-0.086007,0.055117,566.15,-0.027371,0.74425,0.66735,141.68 |
| 13148 | | |
| 13149 | | > ui mousemode right "translate selected models" |
| 13150 | | |
| 13151 | | > view matrix models |
| 13152 | | > #26,-0.098417,0.66235,-0.74271,292.75,-0.99477,-0.086007,0.055117,574.99,-0.027371,0.74425,0.66735,158.53 |
| 13153 | | |
| 13154 | | > view matrix models |
| 13155 | | > #26,-0.098417,0.66235,-0.74271,279.24,-0.99477,-0.086007,0.055117,567.68,-0.027371,0.74425,0.66735,152.74 |
| 13156 | | |
| 13157 | | > fitmap #26 inMap #22 |
| 13158 | | |
| 13159 | | Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage4_postprocess.mrc |
| 13160 | | using 93502 points |
| 13161 | | correlation = 0.8595, correlation about mean = 0.125, overlap = 7142 |
| 13162 | | steps = 212, shift = 65.3, angle = 45.1 degrees |
| 13163 | | |
| 13164 | | Position of emd_3720_2017_leaf.map (#26) relative to |
| 13165 | | COPI_golph_linkage4_postprocess.mrc (#22) coordinates: |
| 13166 | | Matrix rotation and translation |
| 13167 | | 0.58096256 -0.81277432 -0.04336329 248.78856339 |
| 13168 | | 0.77815419 0.57025937 -0.26321146 48.14211366 |
| 13169 | | 0.23865984 0.11917268 0.96376310 148.92251809 |
| 13170 | | Axis 0.23030141 -0.16985622 0.95818063 |
| 13171 | | Axis point 27.47095454 237.58404923 0.00000000 |
| 13172 | | Rotation angle (degrees) 56.11743390 |
| 13173 | | Shift along axis 191.81379244 |
| 13174 | | |
| 13175 | | |
| 13176 | | > view matrix models |
| 13177 | | > #26,-0.75258,0.45055,-0.48023,356.33,-0.63811,-0.67905,0.36292,555.02,-0.16258,0.57957,0.79854,172.51 |
| 13178 | | |
| 13179 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and |
| 13180 | | > resources/Processing/COPI-Golph_GT/All_Linkages_fitting_Golph_AF_RT.cxs" |
| 13181 | | |
| 13182 | | ——— End of log from Tue Dec 5 16:56:09 2023 ——— |
| 13183 | | |
| 13184 | | opened ChimeraX session |
| 13185 | | |
| 13186 | | > hide #!26 models |
| 13187 | | |
| 13188 | | > show #!22 models |
| 13189 | | |
| 13190 | | > show #!23 models |
| 13191 | | |
| 13192 | | > hide #!24 models |
| 13193 | | |
| 13194 | | > show #!24 models |
| 13195 | | |
| 13196 | | > hide #!23 models |
| 13197 | | |
| 13198 | | > show #!23 models |
| 13199 | | |
| 13200 | | > hide #!24 models |
| 13201 | | |
| 13202 | | > hide #!23 models |
| 13203 | | |
| 13204 | | > show #!24 models |
| 13205 | | |
| 13206 | | > hide #!24 models |
| 13207 | | |
| 13208 | | > show #!24 models |
| 13209 | | |
| 13210 | | > hide #!24 models |
| 13211 | | |
| 13212 | | > show #!24 models |
| 13213 | | |
| 13214 | | > hide #!24 models |
| 13215 | | |
| 13216 | | > show #!24 models |
| 13217 | | |
| 13218 | | > hide #!24 models |
| 13219 | | |
| 13220 | | > show #!23 models |
| 13221 | | |
| 13222 | | > hide #!23 models |
| 13223 | | |
| 13224 | | > show #!24 models |
| 13225 | | |
| 13226 | | > hide #!24 models |
| 13227 | | |
| 13228 | | > show #!24 models |
| 13229 | | |
| 13230 | | > hide #!24 models |
| 13231 | | |
| 13232 | | > show #!24 models |
| 13233 | | |
| 13234 | | > hide #!24 models |
| 13235 | | |
| 13236 | | > show #!23 models |
| 13237 | | |
| 13238 | | > hide #!23 models |
| 13239 | | |
| 13240 | | > show #!24 models |
| 13241 | | |
| 13242 | | > show #!25 models |
| 13243 | | |
| 13244 | | > show #!26 models |
| 13245 | | |
| 13246 | | > hide #!25 models |
| 13247 | | |
| 13248 | | > hide #!26 models |
| 13249 | | |
| 13250 | | > show #3 models |
| 13251 | | |
| 13252 | | > show #4 models |
| 13253 | | |
| 13254 | | > show #6 models |
| 13255 | | |
| 13256 | | > show #7 models |
| 13257 | | |
| 13258 | | > show #8 models |
| 13259 | | |
| 13260 | | > show #!9 models |
| 13261 | | |
| 13262 | | > show #10 models |
| 13263 | | |
| 13264 | | > show #12 models |
| 13265 | | |
| 13266 | | > show #13 models |
| 13267 | | |
| 13268 | | > show #14 models |
| 13269 | | |
| 13270 | | > hide #14 models |
| 13271 | | |
| 13272 | | > hide #13 models |
| 13273 | | |
| 13274 | | > hide #12 models |
| 13275 | | |
| 13276 | | > hide #10 models |
| 13277 | | |
| 13278 | | > hide #!9 models |
| 13279 | | |
| 13280 | | > hide #8 models |
| 13281 | | |
| 13282 | | > hide #7 models |
| 13283 | | |
| 13284 | | > hide #6 models |
| 13285 | | |
| 13286 | | > hide #4 models |
| 13287 | | |
| 13288 | | > hide #3 models |
| 13289 | | |
| 13290 | | > show #!2 models |
| 13291 | | |
| 13292 | | > show #4 models |
| 13293 | | |
| 13294 | | > hide #4 models |
| 13295 | | |
| 13296 | | > show #6 models |
| 13297 | | |
| 13298 | | > hide #6 models |
| 13299 | | |
| 13300 | | > show #12 models |
| 13301 | | |
| 13302 | | > hide #12 models |
| 13303 | | |
| 13304 | | > show #13 models |
| 13305 | | |
| 13306 | | > hide #13 models |
| 13307 | | |
| 13308 | | > show #14 models |
| 13309 | | |
| 13310 | | > hide #14 models |
| 13311 | | |
| 13312 | | > show #3 models |
| 13313 | | |
| 13314 | | > show #4 models |
| 13315 | | |
| 13316 | | > hide #3 models |
| 13317 | | |
| 13318 | | > hide #!24 models |
| 13319 | | |
| 13320 | | > hide #!22 models |
| 13321 | | |
| 13322 | | > show #!22 models |
| 13323 | | |
| 13324 | | > show #!24 models |
| 13325 | | |
| 13326 | | > hide #!24 models |
| 13327 | | |
| 13328 | | > hide #!22 models |
| 13329 | | |
| 13330 | | > show #!21 models |
| 13331 | | |
| 13332 | | > show #13 models |
| 13333 | | |
| 13334 | | > show #!25 models |
| 13335 | | |
| 13336 | | > hide #!25 models |
| 13337 | | |
| 13338 | | > show #!26 models |
| 13339 | | |
| 13340 | | > hide #!26 models |
| 13341 | | |
| 13342 | | > hide #!21 models |
| 13343 | | |
| 13344 | | > show #!21 models |
| 13345 | | |
| 13346 | | > hide #13 models |
| 13347 | | |
| 13348 | | > show #13 models |
| 13349 | | |
| 13350 | | > hide #13 models |
| 13351 | | |
| 13352 | | > show #13 models |
| 13353 | | |
| 13354 | | > hide #4 models |
| 13355 | | |
| 13356 | | > show #4 models |
| 13357 | | |
| 13358 | | > hide #13 models |
| 13359 | | |
| 13360 | | > hide #4 models |
| 13361 | | |
| 13362 | | > hide #!2 models |
| 13363 | | |
| 13364 | | > show #!2 models |
| 13365 | | |
| 13366 | | > hide #!2 models |
| 13367 | | |
| 13368 | | > show #!2 models |
| 13369 | | |
| 13370 | | > hide #!2 models |
| 13371 | | |
| 13372 | | > show #!2 models |
| 13373 | | |
| 13374 | | > rename #3 CopA_F8WHL2.pdb |
| 13375 | | |
| 13376 | | > show #4 models |
| 13377 | | |
| 13378 | | > hide #4 models |
| 13379 | | |
| 13380 | | > show #5 models |
| 13381 | | |
| 13382 | | > hide #5 models |
| 13383 | | |
| 13384 | | > rename #4 CopB_Q9JIF7.pdb |
| 13385 | | |
| 13386 | | > rename #5 CopB_Q9JIF7.pdb |
| 13387 | | |
| 13388 | | > show #!1 models |
| 13389 | | |
| 13390 | | > hide #!1 models |
| 13391 | | |
| 13392 | | > show #!1 models |
| 13393 | | |
| 13394 | | > hide #!1 models |
| 13395 | | |
| 13396 | | > show #!1 models |
| 13397 | | |
| 13398 | | > hide #!2 models |
| 13399 | | |
| 13400 | | > show #!2 models |
| 13401 | | |
| 13402 | | > hide #!2 models |
| 13403 | | |
| 13404 | | > hide #!1 models |
| 13405 | | |
| 13406 | | > show #!25 models |
| 13407 | | |
| 13408 | | > hide #!25 models |
| 13409 | | |
| 13410 | | > show #!25 models |
| 13411 | | |
| 13412 | | > show #!26 models |
| 13413 | | |
| 13414 | | > hide #!26 models |
| 13415 | | |
| 13416 | | > show #!26 models |
| 13417 | | |
| 13418 | | > hide #!26 models |
| 13419 | | |
| 13420 | | > hide #!25 models |
| 13421 | | |
| 13422 | | > show #!25 models |
| 13423 | | |
| 13424 | | > show #!26 models |
| 13425 | | |
| 13426 | | > show #!22 models |
| 13427 | | |
| 13428 | | > hide #!22 models |
| 13429 | | |
| 13430 | | > show #!22 models |
| 13431 | | |
| 13432 | | > hide #!22 models |
| 13433 | | |
| 13434 | | > show #!22 models |
| 13435 | | |
| 13436 | | > hide #!22 models |
| 13437 | | |
| 13438 | | > show #!22 models |
| 13439 | | |
| 13440 | | > hide #!22 models |
| 13441 | | |
| 13442 | | > hide #!21 models |
| 13443 | | |
| 13444 | | > hide #!26 models |
| 13445 | | |
| 13446 | | > hide #!25 models |
| 13447 | | |
| 13448 | | > show #!1 models |
| 13449 | | |
| 13450 | | > show #!2 models |
| 13451 | | |
| 13452 | | > hide #!2 models |
| 13453 | | |
| 13454 | | > hide #!1 models |
| 13455 | | |
| 13456 | | > show #!1 models |
| 13457 | | |
| 13458 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and |
| 13459 | | > resources/Processing/COPI-Golph_GT/postprocess_20231221.mrc" |
| 13460 | | |
| 13461 | | Opened postprocess_20231221.mrc as #27, grid size 156,156,156, pixel 2.55, |
| 13462 | | shown at level 0.00309, step 1, values float32 |
| 13463 | | |
| 13464 | | > hide #!27 models |
| 13465 | | |
| 13466 | | > show #!27 models |
| 13467 | | |
| 13468 | | > volume #27 level 0.003558 |
| 13469 | | |
| 13470 | | > select add #27 |
| 13471 | | |
| 13472 | | 2 models selected |
| 13473 | | |
| 13474 | | > ui mousemode right "translate selected models" |
| 13475 | | |
| 13476 | | > view matrix models #27,1,0,0,118.22,0,1,0,38.774,0,0,1,134.02 |
| 13477 | | |
| 13478 | | > view matrix models #27,1,0,0,113.07,0,1,0,116.67,0,0,1,119.27 |
| 13479 | | |
| 13480 | | > select subtract #27 |
| 13481 | | |
| 13482 | | Nothing selected |
| 13483 | | |
| 13484 | | > ui tool show "Fit in Map" |
| 13485 | | |
| 13486 | | > fitmap #27 inMap #1 |
| 13487 | | |
| 13488 | | Fit map postprocess_20231221.mrc in map postprocess.mrc using 21338 points |
| 13489 | | correlation = 0.8877, correlation about mean = 0.5599, overlap = 1.959 |
| 13490 | | steps = 52, shift = 8.5, angle = 0.087 degrees |
| 13491 | | |
| 13492 | | Position of postprocess_20231221.mrc (#27) relative to postprocess.mrc (#1) |
| 13493 | | coordinates: |
| 13494 | | Matrix rotation and translation |
| 13495 | | 0.99999899 -0.00050038 -0.00133045 112.66315082 |
| 13496 | | 0.00049967 0.99999973 -0.00053675 112.06763162 |
| 13497 | | 0.00133072 0.00053609 0.99999897 111.78054676 |
| 13498 | | Axis 0.35307466 -0.87579648 0.32911823 |
| 13499 | | Axis point -89267.57947714 0.00000000 90475.31997439 |
| 13500 | | Rotation angle (degrees) 0.08704872 |
| 13501 | | Shift along axis -21.58091769 |
| 13502 | | |
| 13503 | | |
| 13504 | | > hide #!1 models |
| 13505 | | |
| 13506 | | > show #!1 models |
| 13507 | | |
| 13508 | | > hide #!1 models |
| 13509 | | |
| 13510 | | > show #!1 models |
| 13511 | | |
| 13512 | | > show #!2 models |
| 13513 | | |
| 13514 | | > hide #!2 models |
| 13515 | | |
| 13516 | | > show #!2 models |
| 13517 | | |
| 13518 | | > fitmap #2 inMap #1 |
| 13519 | | |
| 13520 | | Fit map emdb 3720 in map postprocess.mrc using 59756 points |
| 13521 | | correlation = 0.8696, correlation about mean = 0.2876, overlap = 132.2 |
| 13522 | | steps = 60, shift = 0.0416, angle = 0.0228 degrees |
| 13523 | | |
| 13524 | | Position of emdb 3720 (#2) relative to postprocess.mrc (#1) coordinates: |
| 13525 | | Matrix rotation and translation |
| 13526 | | -0.53664251 0.84318753 -0.03239775 278.61248582 |
| 13527 | | -0.84367719 -0.53684303 0.00289191 482.08699507 |
| 13528 | | -0.01495408 0.02888517 0.99947087 223.63820801 |
| 13529 | | Axis 0.01540656 -0.01033910 -0.99982786 |
| 13530 | | Axis point 272.71090587 162.46815483 0.00000000 |
| 13531 | | Rotation angle (degrees) 122.48014641 |
| 13532 | | Shift along axis -224.29159627 |
| 13533 | | |
| 13534 | | |
| 13535 | | > fitmap #2 inMap #1 |
| 13536 | | |
| 13537 | | Fit map emdb 3720 in map postprocess.mrc using 59756 points |
| 13538 | | correlation = 0.8696, correlation about mean = 0.2876, overlap = 132.2 |
| 13539 | | steps = 40, shift = 0.0164, angle = 0.0168 degrees |
| 13540 | | |
| 13541 | | Position of emdb 3720 (#2) relative to postprocess.mrc (#1) coordinates: |
| 13542 | | Matrix rotation and translation |
| 13543 | | -0.53641656 0.84333481 -0.03230586 278.56998005 |
| 13544 | | -0.84382076 -0.53661774 0.00281701 482.07814301 |
| 13545 | | -0.01496021 0.02877145 0.99947406 223.65821367 |
| 13546 | | Axis 0.01538092 -0.01027924 -0.99982887 |
| 13547 | | Axis point 272.73010610 162.45893437 0.00000000 |
| 13548 | | Rotation angle (degrees) 122.46471538 |
| 13549 | | Shift along axis -224.29067599 |
| 13550 | | |
| 13551 | | |
| 13552 | | > hide #!2 models |
| 13553 | | |
| 13554 | | > show #3 models |
| 13555 | | |
| 13556 | | > hide #3 atoms |
| 13557 | | |
| 13558 | | > show #4 models |
| 13559 | | |
| 13560 | | > hide #3-4 atoms |
| 13561 | | |
| 13562 | | > show #5 models |
| 13563 | | |
| 13564 | | > hide #5 models |
| 13565 | | |
| 13566 | | > show #5 models |
| 13567 | | |
| 13568 | | > hide #5 models |
| 13569 | | |
| 13570 | | > show #5 models |
| 13571 | | |
| 13572 | | > hide #5 models |
| 13573 | | |
| 13574 | | > hide #4 models |
| 13575 | | |
| 13576 | | > show #5 models |
| 13577 | | |
| 13578 | | > hide #!1 models |
| 13579 | | |
| 13580 | | > hide #5 models |
| 13581 | | |
| 13582 | | > show #5 models |
| 13583 | | |
| 13584 | | > show #6 models |
| 13585 | | |
| 13586 | | > hide #6 models |
| 13587 | | |
| 13588 | | > show #6 models |
| 13589 | | |
| 13590 | | > show #7 models |
| 13591 | | |
| 13592 | | > show #12 models |
| 13593 | | |
| 13594 | | > hide #7 models |
| 13595 | | |
| 13596 | | > hide #6 models |
| 13597 | | |
| 13598 | | > hide #12 models |
| 13599 | | |
| 13600 | | > show #6 models |
| 13601 | | |
| 13602 | | > hide #6 models |
| 13603 | | |
| 13604 | | > show #6 models |
| 13605 | | |
| 13606 | | > show #4 models |
| 13607 | | |
| 13608 | | > hide #4 models |
| 13609 | | |
| 13610 | | > show #4 models |
| 13611 | | |
| 13612 | | > show #7 models |
| 13613 | | |
| 13614 | | > show #8 models |
| 13615 | | |
| 13616 | | > hide #8 models |
| 13617 | | |
| 13618 | | > show #8 models |
| 13619 | | |
| 13620 | | > show #!9 models |
| 13621 | | |
| 13622 | | > show #10 models |
| 13623 | | |
| 13624 | | > show #11 models |
| 13625 | | |
| 13626 | | > hide #3-8,10-11#!9 atoms |
| 13627 | | |
| 13628 | | > show #12 models |
| 13629 | | |
| 13630 | | > show #13 models |
| 13631 | | |
| 13632 | | > hide #3-8,10-13#!9 atoms |
| 13633 | | |
| 13634 | | > show #14 models |
| 13635 | | |
| 13636 | | > hide atoms |
| 13637 | | |
| 13638 | | > show #!15 models |
| 13639 | | |
| 13640 | | > show #!16 models |
| 13641 | | |
| 13642 | | > hide #!16 models |
| 13643 | | |
| 13644 | | > show #!16 models |
| 13645 | | |
| 13646 | | > hide #!16 models |
| 13647 | | |
| 13648 | | > hide #!15 models |
| 13649 | | |
| 13650 | | > hide #14 models |
| 13651 | | |
| 13652 | | > hide #13 models |
| 13653 | | |
| 13654 | | > hide #12 models |
| 13655 | | |
| 13656 | | > hide #11 models |
| 13657 | | |
| 13658 | | > hide #10 models |
| 13659 | | |
| 13660 | | > hide #!9 models |
| 13661 | | |
| 13662 | | > hide #8 models |
| 13663 | | |
| 13664 | | > hide #7 models |
| 13665 | | |
| 13666 | | > hide #6 models |
| 13667 | | |
| 13668 | | > hide #5 models |
| 13669 | | |
| 13670 | | > hide #4 models |
| 13671 | | |
| 13672 | | > hide #3 models |
| 13673 | | |
| 13674 | | > show #!1 models |
| 13675 | | |
| 13676 | | > hide #!1 models |
| 13677 | | |
| 13678 | | > show #!1 models |
| 13679 | | |
| 13680 | | > show #!2 models |
| 13681 | | |
| 13682 | | > hide #!2 models |
| 13683 | | |
| 13684 | | > show #!2 models |
| 13685 | | |
| 13686 | | > hide #!1 models |
| 13687 | | |
| 13688 | | > show #!1 models |
| 13689 | | |
| 13690 | | > hide #!2 models |
| 13691 | | |
| 13692 | | > show #!2 models |
| 13693 | | |
| 13694 | | > show #3 models |
| 13695 | | |
| 13696 | | > hide #3 models |
| 13697 | | |
| 13698 | | > show #3 models |
| 13699 | | |
| 13700 | | > hide #3 models |
| 13701 | | |
| 13702 | | > show #4 models |
| 13703 | | |
| 13704 | | > hide #4 models |
| 13705 | | |
| 13706 | | > show #4 models |
| 13707 | | |
| 13708 | | > show #5 models |
| 13709 | | |
| 13710 | | > hide #5 models |
| 13711 | | |
| 13712 | | > show #5 models |
| 13713 | | |
| 13714 | | > hide #5 models |
| 13715 | | |
| 13716 | | > show #5 models |
| 13717 | | |
| 13718 | | > hide #5 models |
| 13719 | | |
| 13720 | | > hide #4 models |
| 13721 | | |
| 13722 | | > show #4 models |
| 13723 | | |
| 13724 | | > hide #4 models |
| 13725 | | |
| 13726 | | > show #6 models |
| 13727 | | |
| 13728 | | > hide #6 models |
| 13729 | | |
| 13730 | | > show #6 models |
| 13731 | | |
| 13732 | | > hide #6 models |
| 13733 | | |
| 13734 | | > hide #!2 models |
| 13735 | | |
| 13736 | | > show #4 models |
| 13737 | | |
| 13738 | | > hide #4 models |
| 13739 | | |
| 13740 | | > show #4 models |
| 13741 | | |
| 13742 | | > hide #4 models |
| 13743 | | |
| 13744 | | > show #3 models |
| 13745 | | |
| 13746 | | > show #4 models |
| 13747 | | |
| 13748 | | > hide #3 models |
| 13749 | | |
| 13750 | | > hide #4 models |
| 13751 | | |
| 13752 | | > hide #!27 models |
| 13753 | | |
| 13754 | | > show #!27 models |
| 13755 | | |
| 13756 | | > hide #!27 models |
| 13757 | | |
| 13758 | | > show #!27 models |
| 13759 | | |
| 13760 | | > close #1 |
| 13761 | | |
| 13762 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and |
| 13763 | | > resources/Processing/COPI-Golph_GT/postprocess_20231221.mrc" |
| 13764 | | |
| 13765 | | Opened postprocess_20231221.mrc as #1, grid size 156,156,156, pixel 2.55, |
| 13766 | | shown at level 0.00309, step 1, values float32 |
| 13767 | | |
| 13768 | | > color #1 silver models |
| 13769 | | |
| 13770 | | > select add #1 |
| 13771 | | |
| 13772 | | 2 models selected |
| 13773 | | |
| 13774 | | > volume #1 level 0.004024 |
| 13775 | | |
| 13776 | | > view matrix models #1,1,0,0,78.299,0,1,0,79.616,0,0,1,143.65 |
| 13777 | | |
| 13778 | | > view matrix models #1,1,0,0,117.94,0,1,0,120,0,0,1,119.56 |
| 13779 | | |
| 13780 | | > fitmap #1 inMap #27 |
| 13781 | | |
| 13782 | | Fit map postprocess_20231221.mrc in map postprocess_20231221.mrc using 15259 |
| 13783 | | points |
| 13784 | | correlation = 0.6104, correlation about mean = 0.1891, overlap = 0.3765 |
| 13785 | | steps = 196, shift = 13, angle = 5.06 degrees |
| 13786 | | |
| 13787 | | Position of postprocess_20231221.mrc (#1) relative to postprocess_20231221.mrc |
| 13788 | | (#27) coordinates: |
| 13789 | | Matrix rotation and translation |
| 13790 | | 0.99600058 -0.00210606 0.08932196 -8.32184849 |
| 13791 | | 0.00171311 0.99998852 0.00447574 -2.40606876 |
| 13792 | | -0.08933036 -0.00430482 0.99599275 19.94289709 |
| 13793 | | Axis -0.04907846 0.99856678 0.02134700 |
| 13794 | | Axis point 218.96581399 0.00000000 103.83296215 |
| 13795 | | Rotation angle (degrees) 5.13221794 |
| 13796 | | Shift along axis -1.56847579 |
| 13797 | | |
| 13798 | | |
| 13799 | | > select subtract #1 |
| 13800 | | |
| 13801 | | Nothing selected |
| 13802 | | |
| 13803 | | > hide #!1 models |
| 13804 | | |
| 13805 | | > show #!1 models |
| 13806 | | |
| 13807 | | > hide #!1 models |
| 13808 | | |
| 13809 | | > show #!1 models |
| 13810 | | |
| 13811 | | > hide #!1 models |
| 13812 | | |
| 13813 | | > show #!1 models |
| 13814 | | |
| 13815 | | > ui mousemode right "translate selected models" |
| 13816 | | |
| 13817 | | > select add #1 |
| 13818 | | |
| 13819 | | 2 models selected |
| 13820 | | |
| 13821 | | > view matrix models |
| 13822 | | > #1,0.99612,-0.0026007,0.087995,94.016,0.0022587,0.99999,0.0039858,110.22,-0.088004,-0.0037715,0.99611,133.13 |
| 13823 | | |
| 13824 | | > fitmap #1 inMap #27 |
| 13825 | | |
| 13826 | | Fit map postprocess_20231221.mrc in map postprocess_20231221.mrc using 15259 |
| 13827 | | points |
| 13828 | | correlation = 1, correlation about mean = 0.9999, overlap = 1.098 |
| 13829 | | steps = 72, shift = 0.746, angle = 5.14 degrees |
| 13830 | | |
| 13831 | | Position of postprocess_20231221.mrc (#1) relative to postprocess_20231221.mrc |
| 13832 | | (#27) coordinates: |
| 13833 | | Matrix rotation and translation |
| 13834 | | 0.99999999 0.00007881 -0.00009844 -0.00444357 |
| 13835 | | -0.00007883 0.99999998 -0.00017015 0.03235540 |
| 13836 | | 0.00009842 0.00017015 0.99999998 -0.03743463 |
| 13837 | | Axis 0.80342059 -0.46476274 -0.37217060 |
| 13838 | | Axis point 0.00000000 230.25071217 177.36655494 |
| 13839 | | Rotation angle (degrees) 0.01213425 |
| 13840 | | Shift along axis -0.00467558 |
| 13841 | | |
| 13842 | | |
| 13843 | | > fitmap #1 inMap #27 |
| 13844 | | |
| 13845 | | Fit map postprocess_20231221.mrc in map postprocess_20231221.mrc using 15259 |
| 13846 | | points |
| 13847 | | correlation = 1, correlation about mean = 0.9999, overlap = 1.097 |
| 13848 | | steps = 44, shift = 0.0686, angle = 0.00641 degrees |
| 13849 | | |
| 13850 | | Position of postprocess_20231221.mrc (#1) relative to postprocess_20231221.mrc |
| 13851 | | (#27) coordinates: |
| 13852 | | Matrix rotation and translation |
| 13853 | | 0.99999999 0.00005046 -0.00009993 0.02040220 |
| 13854 | | -0.00005047 1.00000000 -0.00006202 0.05116219 |
| 13855 | | 0.00009993 0.00006202 0.99999999 -0.05958419 |
| 13856 | | Axis 0.48458800 -0.78082282 -0.39432244 |
| 13857 | | Axis point 622.17817535 0.00000000 235.95812245 |
| 13858 | | Rotation angle (degrees) 0.00733296 |
| 13859 | | Shift along axis -0.00656656 |
| 13860 | | |
| 13861 | | |
| 13862 | | > fitmap #1 inMap #27 |
| 13863 | | |
| 13864 | | Fit map postprocess_20231221.mrc in map postprocess_20231221.mrc using 15259 |
| 13865 | | points |
| 13866 | | correlation = 1, correlation about mean = 0.9999, overlap = 1.098 |
| 13867 | | steps = 28, shift = 0.069, angle = 0.00187 degrees |
| 13868 | | |
| 13869 | | Position of postprocess_20231221.mrc (#1) relative to postprocess_20231221.mrc |
| 13870 | | (#27) coordinates: |
| 13871 | | Matrix rotation and translation |
| 13872 | | 1.00000000 0.00002294 -0.00009459 -0.00628371 |
| 13873 | | -0.00002294 1.00000000 -0.00007871 -0.00459590 |
| 13874 | | 0.00009459 0.00007871 0.99999999 -0.03170221 |
| 13875 | | Axis 0.62880180 -0.75566048 -0.18326354 |
| 13876 | | Axis point 324.80810106 0.00000000 -101.88546019 |
| 13877 | | Rotation angle (degrees) 0.00717226 |
| 13878 | | Shift along axis 0.00533159 |
| 13879 | | |
| 13880 | | |
| 13881 | | > fitmap #1 inMap #27 |
| 13882 | | |
| 13883 | | Fit map postprocess_20231221.mrc in map postprocess_20231221.mrc using 15259 |
| 13884 | | points |
| 13885 | | correlation = 0.9999, correlation about mean = 0.9998, overlap = 1.095 |
| 13886 | | steps = 28, shift = 0.0687, angle = 0.0208 degrees |
| 13887 | | |
| 13888 | | Position of postprocess_20231221.mrc (#1) relative to postprocess_20231221.mrc |
| 13889 | | (#27) coordinates: |
| 13890 | | Matrix rotation and translation |
| 13891 | | 0.99999994 -0.00033897 -0.00011199 0.10258927 |
| 13892 | | 0.00033896 0.99999994 -0.00008446 -0.02689940 |
| 13893 | | 0.00011202 0.00008442 0.99999999 -0.06841419 |
| 13894 | | Axis 0.23018010 -0.30531490 0.92401295 |
| 13895 | | Axis point 107.68870552 323.94093990 0.00000000 |
| 13896 | | Rotation angle (degrees) 0.02101864 |
| 13897 | | Shift along axis -0.03138880 |
| 13898 | | |
| 13899 | | |
| 13900 | | > fitmap #1 inMap #27 |
| 13901 | | |
| 13902 | | Fit map postprocess_20231221.mrc in map postprocess_20231221.mrc using 15259 |
| 13903 | | points |
| 13904 | | correlation = 1, correlation about mean = 0.9998, overlap = 1.097 |
| 13905 | | steps = 28, shift = 0.073, angle = 0.0235 degrees |
| 13906 | | |
| 13907 | | Position of postprocess_20231221.mrc (#1) relative to postprocess_20231221.mrc |
| 13908 | | (#27) coordinates: |
| 13909 | | Matrix rotation and translation |
| 13910 | | 0.99999999 0.00007038 -0.00009217 -0.02132593 |
| 13911 | | -0.00007038 1.00000000 -0.00006245 -0.00222104 |
| 13912 | | 0.00009217 0.00006245 0.99999999 -0.03014411 |
| 13913 | | Axis 0.47413336 -0.69976129 -0.53435166 |
| 13914 | | Axis point 283.26765369 0.00000000 -270.23361389 |
| 13915 | | Rotation angle (degrees) 0.00754671 |
| 13916 | | Shift along axis 0.00755042 |
| 13917 | | |
| 13918 | | |
| 13919 | | > fitmap #1 inMap #27 |
| 13920 | | |
| 13921 | | Fit map postprocess_20231221.mrc in map postprocess_20231221.mrc using 15259 |
| 13922 | | points |
| 13923 | | correlation = 1, correlation about mean = 0.9998, overlap = 1.097 |
| 13924 | | steps = 44, shift = 0.0615, angle = 0.00861 degrees |
| 13925 | | |
| 13926 | | Position of postprocess_20231221.mrc (#1) relative to postprocess_20231221.mrc |
| 13927 | | (#27) coordinates: |
| 13928 | | Matrix rotation and translation |
| 13929 | | 0.99999999 -0.00000533 -0.00010912 0.01841063 |
| 13930 | | 0.00000534 1.00000000 0.00006615 -0.01182827 |
| 13931 | | 0.00010912 -0.00006615 0.99999999 -0.05324245 |
| 13932 | | Axis -0.51796938 -0.85437798 0.04178502 |
| 13933 | | Axis point 487.31525535 0.00000000 160.83942816 |
| 13934 | | Rotation angle (degrees) 0.00731758 |
| 13935 | | Shift along axis -0.00165507 |
| 13936 | | |
| 13937 | | |
| 13938 | | > select subtract #1 |
| 13939 | | |
| 13940 | | Nothing selected |
| 13941 | | |
| 13942 | | > hide #!1 models |
| 13943 | | |
| 13944 | | > show #!1 models |
| 13945 | | |
| 13946 | | > hide #!1 models |
| 13947 | | |
| 13948 | | > show #!1 models |
| 13949 | | |
| 13950 | | > hide #!1 models |
| 13951 | | |
| 13952 | | > show #!1 models |
| 13953 | | |
| 13954 | | > show #!2 models |
| 13955 | | |
| 13956 | | > hide #!2 models |
| 13957 | | |
| 13958 | | > fitmap #2 inMap #1 |
| 13959 | | |
| 13960 | | Fit map emdb 3720 in map postprocess_20231221.mrc using 59756 points |
| 13961 | | correlation = 0.7167, correlation about mean = 0.2038, overlap = 49.31 |
| 13962 | | steps = 48, shift = 0.122, angle = 0.144 degrees |
| 13963 | | |
| 13964 | | Position of emdb 3720 (#2) relative to postprocess_20231221.mrc (#1) |
| 13965 | | coordinates: |
| 13966 | | Matrix rotation and translation |
| 13967 | | -0.53823184 0.84226442 -0.02995221 166.48800349 |
| 13968 | | -0.84266804 -0.53843091 0.00165497 370.29528312 |
| 13969 | | -0.01473327 0.02613053 0.99954996 111.78150021 |
| 13970 | | Axis 0.01452401 -0.00903105 -0.99985374 |
| 13971 | | Axis point 185.18798690 138.59937710 0.00000000 |
| 13972 | | Rotation angle (degrees) 122.58541990 |
| 13973 | | Shift along axis -112.69123289 |
| 13974 | | |
| 13975 | | |
| 13976 | | > show #!2 models |
| 13977 | | |
| 13978 | | > fitmap #2 inMap #1 |
| 13979 | | |
| 13980 | | Fit map emdb 3720 in map postprocess_20231221.mrc using 59756 points |
| 13981 | | correlation = 0.7166, correlation about mean = 0.2038, overlap = 49.31 |
| 13982 | | steps = 64, shift = 0.0413, angle = 0.00764 degrees |
| 13983 | | |
| 13984 | | Position of emdb 3720 (#2) relative to postprocess_20231221.mrc (#1) |
| 13985 | | coordinates: |
| 13986 | | Matrix rotation and translation |
| 13987 | | -0.53816911 0.84230315 -0.02999017 166.44451641 |
| 13988 | | -0.84270928 -0.53836604 0.00175716 370.29964567 |
| 13989 | | -0.01466563 0.02621865 0.99954865 111.76370628 |
| 13990 | | Axis 0.01451497 -0.00909329 -0.99985330 |
| 13991 | | Axis point 185.17390242 138.60620608 0.00000000 |
| 13992 | | Rotation angle (degrees) 122.58112651 |
| 13993 | | Shift along axis -112.69861478 |
| 13994 | | |
| 13995 | | |
| 13996 | | > fitmap #2 inMap #1 |
| 13997 | | |
| 13998 | | Fit map emdb 3720 in map postprocess_20231221.mrc using 59756 points |
| 13999 | | correlation = 0.7166, correlation about mean = 0.2039, overlap = 49.31 |
| 14000 | | steps = 48, shift = 0.00275, angle = 0.00297 degrees |
| 14001 | | |
| 14002 | | Position of emdb 3720 (#2) relative to postprocess_20231221.mrc (#1) |
| 14003 | | coordinates: |
| 14004 | | Matrix rotation and translation |
| 14005 | | -0.53816849 0.84230535 -0.02993964 166.43685310 |
| 14006 | | -0.84270998 -0.53836497 0.00174583 370.30180649 |
| 14007 | | -0.01464793 0.02616999 0.99955019 111.76946153 |
| 14008 | | Axis 0.01449280 -0.00907379 -0.99985380 |
| 14009 | | Axis point 185.17023970 138.61104222 0.00000000 |
| 14010 | | Rotation angle (degrees) 122.58101693 |
| 14011 | | Shift along axis -112.70102697 |
| 14012 | | |
| 14013 | | |
| 14014 | | > hide #!2 models |
| 14015 | | |
| 14016 | | > show #3 models |
| 14017 | | |
| 14018 | | > show #4 models |
| 14019 | | |
| 14020 | | > hide #4 models |
| 14021 | | |
| 14022 | | > show #4 models |
| 14023 | | |
| 14024 | | > hide #4 models |
| 14025 | | |
| 14026 | | > show #4 models |
| 14027 | | |
| 14028 | | > show #5 models |
| 14029 | | |
| 14030 | | > hide #5 models |
| 14031 | | |
| 14032 | | > show #5 models |
| 14033 | | |
| 14034 | | > hide #5 models |
| 14035 | | |
| 14036 | | > show #5 models |
| 14037 | | |
| 14038 | | > hide #5 models |
| 14039 | | |
| 14040 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and |
| 14041 | | > resources/Processing/COPI-Golph_GT/20240123_Golph3_fitting.cxs" |
| 14042 | | |
| 14043 | | > show #5 models |
| 14044 | | |
| 14045 | | > hide #5 models |
| 14046 | | |
| 14047 | | > show #6 models |
| 14048 | | |
| 14049 | | > hide #6 models |
| 14050 | | |
| 14051 | | > show #7 models |
| 14052 | | |
| 14053 | | > hide #7 models |
| 14054 | | |
| 14055 | | > show #7 models |
| 14056 | | |
| 14057 | | > hide #7 models |
| 14058 | | |
| 14059 | | > show #8 models |
| 14060 | | |
| 14061 | | > hide #8 models |
| 14062 | | |
| 14063 | | > show #!9 models |
| 14064 | | |
| 14065 | | > hide #!9 models |
| 14066 | | |
| 14067 | | > show #10 models |
| 14068 | | |
| 14069 | | > hide #10 models |
| 14070 | | |
| 14071 | | > show #11 models |
| 14072 | | |
| 14073 | | > hide #11 models |
| 14074 | | |
| 14075 | | > show #12 models |
| 14076 | | |
| 14077 | | > hide #12 models |
| 14078 | | |
| 14079 | | > show #13 models |
| 14080 | | |
| 14081 | | > hide #13 models |
| 14082 | | |
| 14083 | | > show #13 models |
| 14084 | | |
| 14085 | | > hide #13 models |
| 14086 | | |
| 14087 | | > show #14 models |
| 14088 | | |
| 14089 | | > hide #14 models |
| 14090 | | |
| 14091 | | > show #!15 models |
| 14092 | | |
| 14093 | | > hide #!15 models |
| 14094 | | |
| 14095 | | > show #!15 models |
| 14096 | | |
| 14097 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and |
| 14098 | | > resources/Processing/COPI-Golph_GT/20240124_Golph3_fitting.cxs" |
| 14099 | | |
| 14100 | | ——— End of log from Wed Jan 24 14:57:19 2024 ——— |
| 14101 | | |
| 14102 | | opened ChimeraX session |
| 14103 | | |
| 14104 | | > show #!24 models |
| 14105 | | |
| 14106 | | > hide #!24 models |
| 14107 | | |
| 14108 | | > show #!24 models |
| 14109 | | |
| 14110 | | > hide #!24 models |
| 14111 | | |
| 14112 | | > hide #!1 models |
| 14113 | | |
| 14114 | | > show #!1 models |
| 14115 | | |
| 14116 | | > hide #3 models |
| 14117 | | |
| 14118 | | > hide #4 models |
| 14119 | | |
| 14120 | | > show #!2 models |
| 14121 | | |
| 14122 | | > ui tool show "Fit in Map" |
| 14123 | | |
| 14124 | | > fitmap #2 inMap #1 |
| 14125 | | |
| 14126 | | Fit map emdb 3720 in map postprocess_20231221.mrc using 59756 points |
| 14127 | | correlation = 0.7165, correlation about mean = 0.2037, overlap = 49.31 |
| 14128 | | steps = 40, shift = 0.00989, angle = 0.0208 degrees |
| 14129 | | |
| 14130 | | Position of emdb 3720 (#2) relative to postprocess_20231221.mrc (#1) |
| 14131 | | coordinates: |
| 14132 | | Matrix rotation and translation |
| 14133 | | -0.53791695 0.84245856 -0.03014864 166.42009772 |
| 14134 | | -0.84286797 -0.53811777 0.00169321 370.30672430 |
| 14135 | | -0.01479705 0.02632213 0.99954400 111.77203531 |
| 14136 | | Axis 0.01461157 -0.00910762 -0.99985177 |
| 14137 | | Axis point 185.20412256 138.59647932 0.00000000 |
| 14138 | | Rotation angle (degrees) 122.56427261 |
| 14139 | | Shift along axis -112.69641943 |
| 14140 | | |
| 14141 | | |
| 14142 | | > volume #1 level 0.01671 |
| 14143 | | |
| 14144 | | > volume #27 level 0.001721 |
| 14145 | | |
| 14146 | | > hide #!15 models |
| 14147 | | |
| 14148 | | > volume #27 level 0.004894 |
| 14149 | | |
| 14150 | | > hide #!2 models |
| 14151 | | |
| 14152 | | > show #!2 models |
| 14153 | | |
| 14154 | | > volume #1 level 0.01454 |
| 14155 | | |
| 14156 | | > volume #27 level 0.004059 |
| 14157 | | |
| 14158 | | > show #3 models |
| 14159 | | |
| 14160 | | > volume #27 level 0.004059 |
| 14161 | | |
| 14162 | | > show #4 models |
| 14163 | | |
| 14164 | | > hide #4 models |
| 14165 | | |
| 14166 | | > show #4 models |
| 14167 | | |
| 14168 | | > hide #4 models |
| 14169 | | |
| 14170 | | > show #4 models |
| 14171 | | |
| 14172 | | > show #5 models |
| 14173 | | |
| 14174 | | > hide #!2 models |
| 14175 | | |
| 14176 | | > hide #4 models |
| 14177 | | |
| 14178 | | > show #4 models |
| 14179 | | |
| 14180 | | > hide #5 models |
| 14181 | | |
| 14182 | | > show #5 models |
| 14183 | | |
| 14184 | | > hide #5 models |
| 14185 | | |
| 14186 | | > show #5 models |
| 14187 | | |
| 14188 | | > hide #5 models |
| 14189 | | |
| 14190 | | > close #5 |
| 14191 | | |
| 14192 | | > hide #!1 models |
| 14193 | | |
| 14194 | | > show #!1 models |
| 14195 | | |
| 14196 | | > hide #!1 models |
| 14197 | | |
| 14198 | | > show #!1 models |
| 14199 | | |
| 14200 | | > hide #!1 models |
| 14201 | | |
| 14202 | | > show #!1 models |
| 14203 | | |
| 14204 | | > hide #!27 models |
| 14205 | | |
| 14206 | | > volume #27 level 0.003892 |
| 14207 | | |
| 14208 | | > hide #4 models |
| 14209 | | |
| 14210 | | > show #4 models |
| 14211 | | |
| 14212 | | > hide #3 models |
| 14213 | | |
| 14214 | | > show #3 models |
| 14215 | | |
| 14216 | | > volume #27 level 0.003558 |
| 14217 | | |
| 14218 | | > show #6 models |
| 14219 | | |
| 14220 | | > show #7 models |
| 14221 | | |
| 14222 | | > fitmap #3 inMap #1 |
| 14223 | | |
| 14224 | | Fit molecule CopA_F8WHL2.pdb (#3) to map postprocess_20231221.mrc (#1) using |
| 14225 | | 9810 atoms |
| 14226 | | average map value = 0.001845, steps = 68 |
| 14227 | | shifted from previous position = 2.81 |
| 14228 | | rotated from previous position = 2.93 degrees |
| 14229 | | atoms outside contour = 9809, contour level = 0.014544 |
| 14230 | | |
| 14231 | | Position of CopA_F8WHL2.pdb (#3) relative to postprocess_20231221.mrc (#1) |
| 14232 | | coordinates: |
| 14233 | | Matrix rotation and translation |
| 14234 | | 0.90015953 0.40379294 0.16329137 162.19633365 |
| 14235 | | -0.20930428 0.72979075 -0.65084342 244.64037543 |
| 14236 | | -0.38197451 0.55168533 0.74144369 239.08869520 |
| 14237 | | Axis 0.82604072 0.37455388 -0.42114857 |
| 14238 | | Axis point 0.00000000 -323.35348746 438.23786746 |
| 14239 | | Rotation angle (degrees) 46.70955347 |
| 14240 | | Shift along axis 124.91991652 |
| 14241 | | |
| 14242 | | |
| 14243 | | > select add #3 |
| 14244 | | |
| 14245 | | 9810 atoms, 10032 bonds, 1233 residues, 1 model selected |
| 14246 | | |
| 14247 | | > ui mousemode right "translate selected models" |
| 14248 | | |
| 14249 | | > view matrix models |
| 14250 | | > #3,0.90081,0.40263,0.16255,273.54,-0.20867,0.72973,-0.65111,361.1,-0.38078,0.55261,0.74137,353.84 |
| 14251 | | |
| 14252 | | > view matrix models |
| 14253 | | > #3,0.90081,0.40263,0.16255,270.87,-0.20867,0.72973,-0.65111,363.77,-0.38078,0.55261,0.74137,353.1 |
| 14254 | | |
| 14255 | | > view matrix models |
| 14256 | | > #3,0.90081,0.40263,0.16255,268.91,-0.20867,0.72973,-0.65111,361.96,-0.38078,0.55261,0.74137,352.8 |
| 14257 | | |
| 14258 | | > fitmap #3 inMap #1 |
| 14259 | | |
| 14260 | | Fit molecule CopA_F8WHL2.pdb (#3) to map postprocess_20231221.mrc (#1) using |
| 14261 | | 9810 atoms |
| 14262 | | average map value = 0.001845, steps = 92 |
| 14263 | | shifted from previous position = 7.82 |
| 14264 | | rotated from previous position = 0.0457 degrees |
| 14265 | | atoms outside contour = 9809, contour level = 0.014544 |
| 14266 | | |
| 14267 | | Position of CopA_F8WHL2.pdb (#3) relative to postprocess_20231221.mrc (#1) |
| 14268 | | coordinates: |
| 14269 | | Matrix rotation and translation |
| 14270 | | 0.89988106 0.40450120 0.16307313 162.23059759 |
| 14271 | | -0.20991408 0.72944940 -0.65102968 244.65358931 |
| 14272 | | -0.38229588 0.55161793 0.74132820 239.10376091 |
| 14273 | | Axis 0.82572966 0.37444665 -0.42185334 |
| 14274 | | Axis point 0.00000000 -323.24381504 438.40289313 |
| 14275 | | Rotation angle (degrees) 46.73848720 |
| 14276 | | Shift along axis 124.70161062 |
| 14277 | | |
| 14278 | | |
| 14279 | | > show #!2 models |
| 14280 | | |
| 14281 | | > hide #!2 models |
| 14282 | | |
| 14283 | | > view matrix models |
| 14284 | | > #3,0.90054,0.40334,0.16233,272.03,-0.20928,0.72939,-0.6513,359.41,-0.3811,0.55254,0.74126,352.35 |
| 14285 | | |
| 14286 | | > fitmap #3 inMap #1 |
| 14287 | | |
| 14288 | | Fit molecule CopA_F8WHL2.pdb (#3) to map postprocess_20231221.mrc (#1) using |
| 14289 | | 9810 atoms |
| 14290 | | average map value = 0.001846, steps = 52 |
| 14291 | | shifted from previous position = 3.78 |
| 14292 | | rotated from previous position = 0.132 degrees |
| 14293 | | atoms outside contour = 9809, contour level = 0.014544 |
| 14294 | | |
| 14295 | | Position of CopA_F8WHL2.pdb (#3) relative to postprocess_20231221.mrc (#1) |
| 14296 | | coordinates: |
| 14297 | | Matrix rotation and translation |
| 14298 | | 0.90082714 0.40253743 0.16270854 162.19530232 |
| 14299 | | -0.20889682 0.73035632 -0.65033972 244.66834799 |
| 14300 | | -0.38062130 0.55185437 0.74201359 239.15350985 |
| 14301 | | Axis 0.82677669 0.37366050 -0.42049749 |
| 14302 | | Axis point -0.00000000 -323.55120767 438.57037778 |
| 14303 | | Rotation angle (degrees) 46.63854764 |
| 14304 | | Shift along axis 124.95874311 |
| 14305 | | |
| 14306 | | |
| 14307 | | > select subtract #3 |
| 14308 | | |
| 14309 | | Nothing selected |
| 14310 | | |
| 14311 | | > show #8 models |
| 14312 | | |
| 14313 | | > fitmap #8 inMap #1 |
| 14314 | | |
| 14315 | | Fit molecule CopD_Q5XJY5 (#8) to map postprocess_20231221.mrc (#1) using 1462 |
| 14316 | | atoms |
| 14317 | | average map value = 0.003728, steps = 156 |
| 14318 | | shifted from previous position = 3.77 |
| 14319 | | rotated from previous position = 19 degrees |
| 14320 | | atoms outside contour = 1446, contour level = 0.014544 |
| 14321 | | |
| 14322 | | Position of CopD_Q5XJY5 (#8) relative to postprocess_20231221.mrc (#1) |
| 14323 | | coordinates: |
| 14324 | | Matrix rotation and translation |
| 14325 | | 0.23871334 0.93126401 0.27525132 -92.96159773 |
| 14326 | | -0.88635655 0.09315163 0.45353595 105.90758790 |
| 14327 | | 0.39672159 -0.35223589 0.84766849 472.49244217 |
| 14328 | | Axis -0.40451903 -0.06098133 -0.91249418 |
| 14329 | | Axis point -102.33853573 189.91429951 0.00000000 |
| 14330 | | Rotation angle (degrees) 84.84981260 |
| 14331 | | Shift along axis -400.00025351 |
| 14332 | | |
| 14333 | | |
| 14334 | | > select add #8 |
| 14335 | | |
| 14336 | | 1462 atoms, 1481 bonds, 179 residues, 1 model selected |
| 14337 | | |
| 14338 | | > view matrix models |
| 14339 | | > #8,-0.04305,0.99254,0.11405,-54.036,-0.90935,-0.086208,0.407,269.6,0.4138,-0.086188,0.90628,503.09 |
| 14340 | | |
| 14341 | | > fitmap #8 inMap #1 |
| 14342 | | |
| 14343 | | Fit molecule CopD_Q5XJY5 (#8) to map postprocess_20231221.mrc (#1) using 1462 |
| 14344 | | atoms |
| 14345 | | average map value = 0.003728, steps = 156 |
| 14346 | | shifted from previous position = 2.35 |
| 14347 | | rotated from previous position = 19 degrees |
| 14348 | | atoms outside contour = 1446, contour level = 0.014544 |
| 14349 | | |
| 14350 | | Position of CopD_Q5XJY5 (#8) relative to postprocess_20231221.mrc (#1) |
| 14351 | | coordinates: |
| 14352 | | Matrix rotation and translation |
| 14353 | | 0.23975825 0.93129673 0.27423055 -92.95768275 |
| 14354 | | -0.88585521 0.09429203 0.45427918 105.66614145 |
| 14355 | | 0.39721096 -0.35184574 0.84760134 472.42121763 |
| 14356 | | Axis -0.40473531 -0.06174541 -0.91234688 |
| 14357 | | Axis point -102.65876100 189.81188561 0.00000000 |
| 14358 | | Rotation angle (degrees) 84.78888270 |
| 14359 | | Shift along axis -399.91316667 |
| 14360 | | |
| 14361 | | |
| 14362 | | > color #1 #c0c0c09a models |
| 14363 | | |
| 14364 | | > color #1 #c0c0c0a6 models |
| 14365 | | |
| 14366 | | > hide #!27 models |
| 14367 | | |
| 14368 | | > volume #27 level 0.006063 |
| 14369 | | |
| 14370 | | > hide #!27 models |
| 14371 | | |
| 14372 | | > volume #1 level 0.004859 |
| 14373 | | |
| 14374 | | > volume #1 level 0.00369 |
| 14375 | | |
| 14376 | | > select subtract #8 |
| 14377 | | |
| 14378 | | Nothing selected |
| 14379 | | |
| 14380 | | > show #!9 models |
| 14381 | | |
| 14382 | | > hide #!9 models |
| 14383 | | |
| 14384 | | > show #!9 models |
| 14385 | | |
| 14386 | | > fitmap #9 inMap #1 |
| 14387 | | |
| 14388 | | Fit molecule CopG_Q9QZE5 (#9) to map postprocess_20231221.mrc (#1) using 6673 |
| 14389 | | atoms |
| 14390 | | average map value = 0.003524, steps = 64 |
| 14391 | | shifted from previous position = 0.586 |
| 14392 | | rotated from previous position = 0.992 degrees |
| 14393 | | atoms outside contour = 4569, contour level = 0.0036898 |
| 14394 | | |
| 14395 | | Position of CopG_Q9QZE5 (#9) relative to postprocess_20231221.mrc (#1) |
| 14396 | | coordinates: |
| 14397 | | Matrix rotation and translation |
| 14398 | | 0.48946039 -0.51119098 -0.70647881 223.52094052 |
| 14399 | | 0.54881092 -0.44901255 0.70512006 282.30283630 |
| 14400 | | -0.67766887 -0.73285162 0.06077334 258.73062006 |
| 14401 | | Axis -0.80483252 -0.01612492 0.59328290 |
| 14402 | | Axis point 0.00000000 245.01292905 103.84475236 |
| 14403 | | Rotation angle (degrees) 116.70451631 |
| 14404 | | Shift along axis -30.94857928 |
| 14405 | | |
| 14406 | | |
| 14407 | | > fitmap #9 inMap #1 |
| 14408 | | |
| 14409 | | Fit molecule CopG_Q9QZE5 (#9) to map postprocess_20231221.mrc (#1) using 6673 |
| 14410 | | atoms |
| 14411 | | average map value = 0.003524, steps = 48 |
| 14412 | | shifted from previous position = 0.00538 |
| 14413 | | rotated from previous position = 0.0139 degrees |
| 14414 | | atoms outside contour = 4570, contour level = 0.0036898 |
| 14415 | | |
| 14416 | | Position of CopG_Q9QZE5 (#9) relative to postprocess_20231221.mrc (#1) |
| 14417 | | coordinates: |
| 14418 | | Matrix rotation and translation |
| 14419 | | 0.48927229 -0.51133667 -0.70650367 223.52773984 |
| 14420 | | 0.54886344 -0.44901336 0.70507867 282.30389544 |
| 14421 | | -0.67776216 -0.73274949 0.06096421 258.73180389 |
| 14422 | | Axis -0.80475175 -0.01608661 0.59339350 |
| 14423 | | Axis point 0.00000000 245.01905582 103.85933152 |
| 14424 | | Rotation angle (degrees) 116.70445294 |
| 14425 | | Shift along axis -30.89588036 |
| 14426 | | |
| 14427 | | |
| 14428 | | > fitmap #9 inMap #1 |
| 14429 | | |
| 14430 | | Fit molecule CopG_Q9QZE5 (#9) to map postprocess_20231221.mrc (#1) using 6673 |
| 14431 | | atoms |
| 14432 | | average map value = 0.003524, steps = 48 |
| 14433 | | shifted from previous position = 0.0168 |
| 14434 | | rotated from previous position = 0.0102 degrees |
| 14435 | | atoms outside contour = 4571, contour level = 0.0036898 |
| 14436 | | |
| 14437 | | Position of CopG_Q9QZE5 (#9) relative to postprocess_20231221.mrc (#1) |
| 14438 | | coordinates: |
| 14439 | | Matrix rotation and translation |
| 14440 | | 0.48915096 -0.51134415 -0.70658227 223.52965885 |
| 14441 | | 0.54885208 -0.44914905 0.70500108 282.29080176 |
| 14442 | | -0.67785893 -0.73266110 0.06095061 258.73832985 |
| 14443 | | Axis -0.80472018 -0.01607766 0.59343656 |
| 14444 | | Axis point 0.00000000 244.99753955 103.89134370 |
| 14445 | | Rotation angle (degrees) 116.71313164 |
| 14446 | | Shift along axis -30.87261952 |
| 14447 | | |
| 14448 | | |
| 14449 | | > show #10 models |
| 14450 | | |
| 14451 | | > fitmap #10 inMap #1 |
| 14452 | | |
| 14453 | | Fit molecule CopZ2_Q9CTG7.pdb (#10) to map postprocess_20231221.mrc (#1) using |
| 14454 | | 1463 atoms |
| 14455 | | average map value = 0.003943, steps = 48 |
| 14456 | | shifted from previous position = 0.417 |
| 14457 | | rotated from previous position = 1.46 degrees |
| 14458 | | atoms outside contour = 792, contour level = 0.0036898 |
| 14459 | | |
| 14460 | | Position of CopZ2_Q9CTG7.pdb (#10) relative to postprocess_20231221.mrc (#1) |
| 14461 | | coordinates: |
| 14462 | | Matrix rotation and translation |
| 14463 | | -0.81864305 0.29541521 -0.49249716 229.58444037 |
| 14464 | | 0.42688194 0.88667169 -0.17772211 242.05157821 |
| 14465 | | 0.38418147 -0.35572911 -0.85197502 217.24514022 |
| 14466 | | Axis -0.19687193 -0.96958778 0.14539939 |
| 14467 | | Axis point 59.00002771 0.00000000 149.03806421 |
| 14468 | | Rotation angle (degrees) 153.12225239 |
| 14469 | | Shift along axis -248.30167204 |
| 14470 | | |
| 14471 | | |
| 14472 | | > fitmap #10 inMap #1 |
| 14473 | | |
| 14474 | | Fit molecule CopZ2_Q9CTG7.pdb (#10) to map postprocess_20231221.mrc (#1) using |
| 14475 | | 1463 atoms |
| 14476 | | average map value = 0.003943, steps = 28 |
| 14477 | | shifted from previous position = 0.0492 |
| 14478 | | rotated from previous position = 0.0271 degrees |
| 14479 | | atoms outside contour = 792, contour level = 0.0036898 |
| 14480 | | |
| 14481 | | Position of CopZ2_Q9CTG7.pdb (#10) relative to postprocess_20231221.mrc (#1) |
| 14482 | | coordinates: |
| 14483 | | Matrix rotation and translation |
| 14484 | | -0.81849776 0.29524030 -0.49284341 229.56017056 |
| 14485 | | 0.42694330 0.88660030 -0.17793076 242.03285382 |
| 14486 | | 0.38442278 -0.35605212 -0.85173121 217.28362866 |
| 14487 | | Axis -0.19686199 -0.96956572 0.14555984 |
| 14488 | | Axis point 58.95712397 0.00000000 149.09318624 |
| 14489 | | Rotation angle (degrees) 153.10212696 |
| 14490 | | Shift along axis -248.23066084 |
| 14491 | | |
| 14492 | | |
| 14493 | | > hide #10 models |
| 14494 | | |
| 14495 | | > show #11 models |
| 14496 | | |
| 14497 | | > fitmap #11 inMap #1 |
| 14498 | | |
| 14499 | | Fit molecule CopZ1_P61924.pdb (#11) to map postprocess_20231221.mrc (#1) using |
| 14500 | | 1420 atoms |
| 14501 | | average map value = 0.003933, steps = 44 |
| 14502 | | shifted from previous position = 0.312 |
| 14503 | | rotated from previous position = 1.46 degrees |
| 14504 | | atoms outside contour = 727, contour level = 0.0036898 |
| 14505 | | |
| 14506 | | Position of CopZ1_P61924.pdb (#11) relative to postprocess_20231221.mrc (#1) |
| 14507 | | coordinates: |
| 14508 | | Matrix rotation and translation |
| 14509 | | 0.16479913 -0.93983802 -0.29924197 230.49736056 |
| 14510 | | -0.38664204 0.21755152 -0.89620270 241.46224490 |
| 14511 | | 0.90738591 0.26339295 -0.32752859 218.19778081 |
| 14512 | | Axis 0.65790199 -0.68458595 0.31385831 |
| 14513 | | Axis point 143.42213466 -0.00000000 249.43293093 |
| 14514 | | Rotation angle (degrees) 118.20248350 |
| 14515 | | Shift along axis 54.82620005 |
| 14516 | | |
| 14517 | | |
| 14518 | | > fitmap #11 inMap #1 |
| 14519 | | |
| 14520 | | Fit molecule CopZ1_P61924.pdb (#11) to map postprocess_20231221.mrc (#1) using |
| 14521 | | 1420 atoms |
| 14522 | | average map value = 0.003933, steps = 40 |
| 14523 | | shifted from previous position = 0.00516 |
| 14524 | | rotated from previous position = 0.0582 degrees |
| 14525 | | atoms outside contour = 729, contour level = 0.0036898 |
| 14526 | | |
| 14527 | | Position of CopZ1_P61924.pdb (#11) relative to postprocess_20231221.mrc (#1) |
| 14528 | | coordinates: |
| 14529 | | Matrix rotation and translation |
| 14530 | | 0.16557357 -0.93960238 -0.29955428 230.49711147 |
| 14531 | | -0.38616785 0.21772091 -0.89636600 241.45978242 |
| 14532 | | 0.90744685 0.26409275 -0.32679540 218.19963395 |
| 14533 | | Axis 0.65805631 -0.68444890 0.31383372 |
| 14534 | | Axis point 143.36639957 0.00000000 249.52617996 |
| 14535 | | Rotation angle (degrees) 118.14798262 |
| 14536 | | Shift along axis 54.89159910 |
| 14537 | | |
| 14538 | | |
| 14539 | | > show #12 models |
| 14540 | | |
| 14541 | | > hide #12 models |
| 14542 | | |
| 14543 | | > show #12 models |
| 14544 | | |
| 14545 | | > hide #12 models |
| 14546 | | |
| 14547 | | > show #12 models |
| 14548 | | |
| 14549 | | > hide #12 models |
| 14550 | | |
| 14551 | | > show #12 models |
| 14552 | | |
| 14553 | | > hide #12 models |
| 14554 | | |
| 14555 | | > show #12 models |
| 14556 | | |
| 14557 | | > close #12 |
| 14558 | | |
| 14559 | | > show #13 models |
| 14560 | | |
| 14561 | | > fitmap #7 inMap #1 |
| 14562 | | |
| 14563 | | Fit molecule hArf1_P84078 (#7) to map postprocess_20231221.mrc (#1) using 1457 |
| 14564 | | atoms |
| 14565 | | average map value = 0.003766, steps = 56 |
| 14566 | | shifted from previous position = 0.864 |
| 14567 | | rotated from previous position = 4.14 degrees |
| 14568 | | atoms outside contour = 770, contour level = 0.0036898 |
| 14569 | | |
| 14570 | | Position of hArf1_P84078 (#7) relative to postprocess_20231221.mrc (#1) |
| 14571 | | coordinates: |
| 14572 | | Matrix rotation and translation |
| 14573 | | -0.84483130 -0.49393057 0.20565176 243.02165057 |
| 14574 | | -0.47593422 0.51817889 -0.71061750 195.90564270 |
| 14575 | | 0.24443130 -0.69822863 -0.67285221 220.58765330 |
| 14576 | | Axis 0.27833451 -0.87124025 0.40431464 |
| 14577 | | Axis point 151.35909954 0.00000000 157.32737010 |
| 14578 | | Rotation angle (degrees) 178.72475613 |
| 14579 | | Shift along axis -13.85275083 |
| 14580 | | |
| 14581 | | |
| 14582 | | > fitmap #6 inMap #1 |
| 14583 | | |
| 14584 | | Fit molecule hArf1_P84078 (#6) to map postprocess_20231221.mrc (#1) using 1457 |
| 14585 | | atoms |
| 14586 | | average map value = 0.002587, steps = 44 |
| 14587 | | shifted from previous position = 2.4 |
| 14588 | | rotated from previous position = 3.14 degrees |
| 14589 | | atoms outside contour = 1383, contour level = 0.0036898 |
| 14590 | | |
| 14591 | | Position of hArf1_P84078 (#6) relative to postprocess_20231221.mrc (#1) |
| 14592 | | coordinates: |
| 14593 | | Matrix rotation and translation |
| 14594 | | 0.15746228 0.02392526 0.98723513 126.72965474 |
| 14595 | | -0.68671732 -0.71576648 0.12687654 200.57796574 |
| 14596 | | 0.70966537 -0.69792974 -0.09627633 178.39429805 |
| 14597 | | Axis -0.73410771 0.24704722 -0.63249785 |
| 14598 | | Axis point 0.00000000 138.26513657 -15.48328042 |
| 14599 | | Rotation angle (degrees) 145.82138083 |
| 14600 | | Shift along axis -156.31499806 |
| 14601 | | |
| 14602 | | |
| 14603 | | > fitmap #13 inMap #1 |
| 14604 | | |
| 14605 | | Fit molecule Golph3_ Q9CRA5.pdb (#13) to map postprocess_20231221.mrc (#1) |
| 14606 | | using 2367 atoms |
| 14607 | | average map value = 0.0031, steps = 64 |
| 14608 | | shifted from previous position = 0.356 |
| 14609 | | rotated from previous position = 1.5 degrees |
| 14610 | | atoms outside contour = 1694, contour level = 0.0036898 |
| 14611 | | |
| 14612 | | Position of Golph3_ Q9CRA5.pdb (#13) relative to postprocess_20231221.mrc (#1) |
| 14613 | | coordinates: |
| 14614 | | Matrix rotation and translation |
| 14615 | | 0.66106910 -0.23543049 0.71243254 198.02566618 |
| 14616 | | -0.68861463 -0.56745520 0.45144710 233.21553124 |
| 14617 | | 0.29798913 -0.78902920 -0.53724798 191.32656018 |
| 14618 | | Axis -0.89618921 0.29941701 -0.32740548 |
| 14619 | | Axis point 0.00000000 180.09147202 -4.24254670 |
| 14620 | | Rotation angle (degrees) 136.20470288 |
| 14621 | | Shift along axis -170.28113246 |
| 14622 | | |
| 14623 | | |
| 14624 | | > fitmap #13 inMap #1 |
| 14625 | | |
| 14626 | | Fit molecule Golph3_ Q9CRA5.pdb (#13) to map postprocess_20231221.mrc (#1) |
| 14627 | | using 2367 atoms |
| 14628 | | average map value = 0.0031, steps = 48 |
| 14629 | | shifted from previous position = 0.0608 |
| 14630 | | rotated from previous position = 0.0836 degrees |
| 14631 | | atoms outside contour = 1695, contour level = 0.0036898 |
| 14632 | | |
| 14633 | | Position of Golph3_ Q9CRA5.pdb (#13) relative to postprocess_20231221.mrc (#1) |
| 14634 | | coordinates: |
| 14635 | | Matrix rotation and translation |
| 14636 | | 0.66033234 -0.23665806 0.71270903 198.05899585 |
| 14637 | | -0.68948127 -0.56717145 0.45047989 233.25398840 |
| 14638 | | 0.29761852 -0.78886596 -0.53769295 191.34695105 |
| 14639 | | Axis -0.89597915 0.30008770 -0.32736637 |
| 14640 | | Axis point 0.00000000 180.19607325 -4.21984410 |
| 14641 | | Rotation angle (degrees) 136.24188641 |
| 14642 | | Shift along axis -170.10063410 |
| 14643 | | |
| 14644 | | |
| 14645 | | > fitmap #13 inMap #1 |
| 14646 | | |
| 14647 | | Fit molecule Golph3_ Q9CRA5.pdb (#13) to map postprocess_20231221.mrc (#1) |
| 14648 | | using 2367 atoms |
| 14649 | | average map value = 0.0031, steps = 48 |
| 14650 | | shifted from previous position = 0.0614 |
| 14651 | | rotated from previous position = 0.0877 degrees |
| 14652 | | atoms outside contour = 1694, contour level = 0.0036898 |
| 14653 | | |
| 14654 | | Position of Golph3_ Q9CRA5.pdb (#13) relative to postprocess_20231221.mrc (#1) |
| 14655 | | coordinates: |
| 14656 | | Matrix rotation and translation |
| 14657 | | 0.66111688 -0.23537988 0.71240493 198.02527108 |
| 14658 | | -0.68855172 -0.56750955 0.45147474 233.21545821 |
| 14659 | | 0.29802854 -0.78900521 -0.53726136 191.32659705 |
| 14660 | | Axis -0.89620533 0.29937310 -0.32740152 |
| 14661 | | Axis point 0.00000000 180.08399595 -4.23802996 |
| 14662 | | Rotation angle (degrees) 136.20552929 |
| 14663 | | Shift along axis -170.29348570 |
| 14664 | | |
| 14665 | | |
| 14666 | | > fitmap #13 inMap #1 |
| 14667 | | |
| 14668 | | Fit molecule Golph3_ Q9CRA5.pdb (#13) to map postprocess_20231221.mrc (#1) |
| 14669 | | using 2367 atoms |
| 14670 | | average map value = 0.0031, steps = 48 |
| 14671 | | shifted from previous position = 0.0592 |
| 14672 | | rotated from previous position = 0.0908 degrees |
| 14673 | | atoms outside contour = 1696, contour level = 0.0036898 |
| 14674 | | |
| 14675 | | Position of Golph3_ Q9CRA5.pdb (#13) relative to postprocess_20231221.mrc (#1) |
| 14676 | | coordinates: |
| 14677 | | Matrix rotation and translation |
| 14678 | | 0.66032840 -0.23672237 0.71269132 198.05842868 |
| 14679 | | -0.68951672 -0.56712470 0.45048447 233.25039753 |
| 14680 | | 0.29754511 -0.78888028 -0.53771258 191.34783844 |
| 14681 | | Axis -0.89597713 0.30012272 -0.32733979 |
| 14682 | | Axis point 0.00000000 180.20108391 -4.21779697 |
| 14683 | | Rotation angle (degrees) 136.24092631 |
| 14684 | | Shift along axis -170.08783960 |
| 14685 | | |
| 14686 | | |
| 14687 | | > fitmap #13 inMap #1 |
| 14688 | | |
| 14689 | | Fit molecule Golph3_ Q9CRA5.pdb (#13) to map postprocess_20231221.mrc (#1) |
| 14690 | | using 2367 atoms |
| 14691 | | average map value = 0.0031, steps = 44 |
| 14692 | | shifted from previous position = 0.075 |
| 14693 | | rotated from previous position = 0.112 degrees |
| 14694 | | atoms outside contour = 1694, contour level = 0.0036898 |
| 14695 | | |
| 14696 | | Position of Golph3_ Q9CRA5.pdb (#13) relative to postprocess_20231221.mrc (#1) |
| 14697 | | coordinates: |
| 14698 | | Matrix rotation and translation |
| 14699 | | 0.66127138 -0.23504648 0.71237161 198.01452577 |
| 14700 | | -0.68840739 -0.56742096 0.45180606 233.20554172 |
| 14701 | | 0.29801916 -0.78916830 -0.53702698 191.32490872 |
| 14702 | | Axis -0.89624017 0.29924817 -0.32742035 |
| 14703 | | Axis point 0.00000000 180.07264602 -4.26204900 |
| 14704 | | Rotation angle (degrees) 136.18576759 |
| 14705 | | Shift along axis -170.32590854 |
| 14706 | | |
| 14707 | | |
| 14708 | | > fitmap #13 inMap #1 |
| 14709 | | |
| 14710 | | Fit molecule Golph3_ Q9CRA5.pdb (#13) to map postprocess_20231221.mrc (#1) |
| 14711 | | using 2367 atoms |
| 14712 | | average map value = 0.0031, steps = 36 |
| 14713 | | shifted from previous position = 0.0635 |
| 14714 | | rotated from previous position = 0.105 degrees |
| 14715 | | atoms outside contour = 1695, contour level = 0.0036898 |
| 14716 | | |
| 14717 | | Position of Golph3_ Q9CRA5.pdb (#13) relative to postprocess_20231221.mrc (#1) |
| 14718 | | coordinates: |
| 14719 | | Matrix rotation and translation |
| 14720 | | 0.66042804 -0.23664749 0.71262386 198.05230461 |
| 14721 | | -0.68940567 -0.56720478 0.45055361 233.24248648 |
| 14722 | | 0.29758128 -0.78884517 -0.53774407 191.34290893 |
| 14723 | | Axis -0.89600980 0.30005049 -0.32731658 |
| 14724 | | Axis point 0.00000000 180.18416582 -4.20856795 |
| 14725 | | Rotation angle (degrees) 136.24142035 |
| 14726 | | Shift along axis -170.10198828 |
| 14727 | | |
| 14728 | | |
| 14729 | | > fitmap #13 inMap #1 |
| 14730 | | |
| 14731 | | Fit molecule Golph3_ Q9CRA5.pdb (#13) to map postprocess_20231221.mrc (#1) |
| 14732 | | using 2367 atoms |
| 14733 | | average map value = 0.0031, steps = 44 |
| 14734 | | shifted from previous position = 0.00651 |
| 14735 | | rotated from previous position = 0.0146 degrees |
| 14736 | | atoms outside contour = 1696, contour level = 0.0036898 |
| 14737 | | |
| 14738 | | Position of Golph3_ Q9CRA5.pdb (#13) relative to postprocess_20231221.mrc (#1) |
| 14739 | | coordinates: |
| 14740 | | Matrix rotation and translation |
| 14741 | | 0.66047830 -0.23642569 0.71265089 198.04833551 |
| 14742 | | -0.68934139 -0.56715067 0.45072005 233.23896951 |
| 14743 | | 0.29761863 -0.78895057 -0.53756873 191.34102815 |
| 14744 | | Axis -0.89601715 0.29997970 -0.32736134 |
| 14745 | | Axis point 0.00000000 180.17843945 -4.22962225 |
| 14746 | | Rotation angle (degrees) 136.22983542 |
| 14747 | | Shift along axis -170.12540314 |
| 14748 | | |
| 14749 | | |
| 14750 | | > show #14 models |
| 14751 | | |
| 14752 | | > fitmap #14 inMap #1 |
| 14753 | | |
| 14754 | | Fit molecule CopBprime_O55029.pdb (#14) to map postprocess_20231221.mrc (#1) |
| 14755 | | using 7214 atoms |
| 14756 | | average map value = 0.00312, steps = 44 |
| 14757 | | shifted from previous position = 0.476 |
| 14758 | | rotated from previous position = 0.838 degrees |
| 14759 | | atoms outside contour = 4439, contour level = 0.0036898 |
| 14760 | | |
| 14761 | | Position of CopBprime_O55029.pdb (#14) relative to postprocess_20231221.mrc |
| 14762 | | (#1) coordinates: |
| 14763 | | Matrix rotation and translation |
| 14764 | | -0.16270681 -0.17514830 -0.97100441 188.48036639 |
| 14765 | | -0.01393129 -0.98361241 0.17975692 177.43794261 |
| 14766 | | -0.98657610 0.04277502 0.15760039 238.55464879 |
| 14767 | | Axis -0.64575721 0.07340777 0.76000588 |
| 14768 | | Axis point 189.56540435 85.43326979 0.00000000 |
| 14769 | | Rotation angle (degrees) 173.91158591 |
| 14770 | | Shift along axis 72.61570301 |
| 14771 | | |
| 14772 | | |
| 14773 | | > fitmap #14 inMap #1 |
| 14774 | | |
| 14775 | | Fit molecule CopBprime_O55029.pdb (#14) to map postprocess_20231221.mrc (#1) |
| 14776 | | using 7214 atoms |
| 14777 | | average map value = 0.00312, steps = 48 |
| 14778 | | shifted from previous position = 0.0351 |
| 14779 | | rotated from previous position = 0.00705 degrees |
| 14780 | | atoms outside contour = 4437, contour level = 0.0036898 |
| 14781 | | |
| 14782 | | Position of CopBprime_O55029.pdb (#14) relative to postprocess_20231221.mrc |
| 14783 | | (#1) coordinates: |
| 14784 | | Matrix rotation and translation |
| 14785 | | -0.16280622 -0.17508181 -0.97099974 188.50106463 |
| 14786 | | -0.01396996 -0.98362224 0.17970011 177.41019990 |
| 14787 | | -0.98655916 0.04282112 0.15769393 238.55155391 |
| 14788 | | Axis -0.64572039 0.07340086 0.76003783 |
| 14789 | | Axis point 189.56979851 85.41555075 0.00000000 |
| 14790 | | Rotation angle (degrees) 173.91582886 |
| 14791 | | Shift along axis 72.61128521 |
| 14792 | | |
| 14793 | | |
| 14794 | | > show #10 models |
| 14795 | | |
| 14796 | | > hide #10 models |
| 14797 | | |
| 14798 | | > rename #6 #5 |
| 14799 | | |
| 14800 | | No name or id option specified for renaming |
| 14801 | | |
| 14802 | | > rename #6 id #5 |
| 14803 | | |
| 14804 | | > rename #7 id #6 |
| 14805 | | |
| 14806 | | > rename #14 id #7 |
| 14807 | | |
| 14808 | | > rename #10 id #12 |
| 14809 | | |
| 14810 | | > rename #11 id #10 |
| 14811 | | |
| 14812 | | > rename #13 id #11 |
| 14813 | | |
| 14814 | | > show #12 models |
| 14815 | | |
| 14816 | | > hide #12 models |
| 14817 | | |
| 14818 | | > show #12 models |
| 14819 | | |
| 14820 | | > show #!2 models |
| 14821 | | |
| 14822 | | > hide #!2 models |
| 14823 | | |
| 14824 | | > show #!2 models |
| 14825 | | |
| 14826 | | > fitmap #2 inMap #1 |
| 14827 | | |
| 14828 | | Fit map emdb 3720 in map postprocess_20231221.mrc using 59756 points |
| 14829 | | correlation = 0.7167, correlation about mean = 0.2038, overlap = 49.31 |
| 14830 | | steps = 60, shift = 0.05, angle = 0.016 degrees |
| 14831 | | |
| 14832 | | Position of emdb 3720 (#2) relative to postprocess_20231221.mrc (#1) |
| 14833 | | coordinates: |
| 14834 | | Matrix rotation and translation |
| 14835 | | -0.53806318 0.84237008 -0.03001127 166.46851211 |
| 14836 | | -0.84277337 -0.53826641 0.00152601 370.30102779 |
| 14837 | | -0.01486859 0.02611378 0.99954840 111.80242990 |
| 14838 | | Axis 0.01458877 -0.00898467 -0.99985321 |
| 14839 | | Axis point 185.20870656 138.59733883 0.00000000 |
| 14840 | | Rotation angle (degrees) 122.57414654 |
| 14841 | | Shift along axis -112.68447858 |
| 14842 | | |
| 14843 | | |
| 14844 | | > fitmap #2 inMap #1 |
| 14845 | | |
| 14846 | | Fit map emdb 3720 in map postprocess_20231221.mrc using 59756 points |
| 14847 | | correlation = 0.7166, correlation about mean = 0.2037, overlap = 49.32 |
| 14848 | | steps = 48, shift = 0.0158, angle = 0.0192 degrees |
| 14849 | | |
| 14850 | | Position of emdb 3720 (#2) relative to postprocess_20231221.mrc (#1) |
| 14851 | | coordinates: |
| 14852 | | Matrix rotation and translation |
| 14853 | | -0.53783250 0.84252302 -0.02985225 166.40464852 |
| 14854 | | -0.84292358 -0.53803088 0.00161764 370.29565125 |
| 14855 | | -0.01469853 0.02603319 0.99955302 111.79406715 |
| 14856 | | Axis 0.01448399 -0.00898962 -0.99985469 |
| 14857 | | Axis point 185.20258353 138.59990210 0.00000000 |
| 14858 | | Rotation angle (degrees) 122.55814219 |
| 14859 | | Shift along axis -112.69643449 |
| 14860 | | |
| 14861 | | |
| 14862 | | > hide #!2 models |
| 14863 | | |
| 14864 | | > show #!15 models |
| 14865 | | |
| 14866 | | > hide #!15 models |
| 14867 | | |
| 14868 | | > show #!15 models |
| 14869 | | |
| 14870 | | > hide #!15 models |
| 14871 | | |
| 14872 | | > show #!16 models |
| 14873 | | |
| 14874 | | > hide #!16 models |
| 14875 | | |
| 14876 | | > show #!17 models |
| 14877 | | |
| 14878 | | > hide #!17 models |
| 14879 | | |
| 14880 | | > show #!18 models |
| 14881 | | |
| 14882 | | > hide #!18 models |
| 14883 | | |
| 14884 | | > show #!19 models |
| 14885 | | |
| 14886 | | > hide #!19 models |
| 14887 | | |
| 14888 | | > show #!20 models |
| 14889 | | |
| 14890 | | > hide #!20 models |
| 14891 | | |
| 14892 | | > show #!21 models |
| 14893 | | |
| 14894 | | > hide #!21 models |
| 14895 | | |
| 14896 | | > rename #15 id #13 |
| 14897 | | |
| 14898 | | > rename #16 id #14 |
| 14899 | | |
| 14900 | | > rename #17 id #15 |
| 14901 | | |
| 14902 | | > rename #18 id #16 |
| 14903 | | |
| 14904 | | > rename #19 id #17 |
| 14905 | | |
| 14906 | | > show #!13 models |
| 14907 | | |
| 14908 | | > hide #!13 models |
| 14909 | | |
| 14910 | | > show #!14 models |
| 14911 | | |
| 14912 | | > hide #!14 models |
| 14913 | | |
| 14914 | | > show #!15 models |
| 14915 | | |
| 14916 | | > hide #!15 models |
| 14917 | | |
| 14918 | | > show #!16 models |
| 14919 | | |
| 14920 | | > hide #!16 models |
| 14921 | | |
| 14922 | | > show #!17 models |
| 14923 | | |
| 14924 | | > hide #!17 models |
| 14925 | | |
| 14926 | | > rename #20 id #18 |
| 14927 | | |
| 14928 | | > rename #21 id #19 |
| 14929 | | |
| 14930 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and |
| 14931 | | > resources/Processing/Reference structures/emd_2988_2015_linkage3.map" |
| 14932 | | |
| 14933 | | Opened emd_2988_2015_linkage3.map as #20, grid size 200,200,200, pixel 2.02, |
| 14934 | | shown at level 3.38, step 1, values float32 |
| 14935 | | |
| 14936 | | > color #20 #fffb00ff models |
| 14937 | | |
| 14938 | | > color #20 #fffeb6ff models |
| 14939 | | |
| 14940 | | > hide #!20 models |
| 14941 | | |
| 14942 | | > color #24 #b9ffffff models |
| 14943 | | |
| 14944 | | > color #23 #fffeb6ff models |
| 14945 | | |
| 14946 | | > rename #22 id #21 |
| 14947 | | |
| 14948 | | > rename #23 id #22 |
| 14949 | | |
| 14950 | | > rename #24 id #23 |
| 14951 | | |
| 14952 | | > rename #27 id #24 |
| 14953 | | |
| 14954 | | > show #!24 models |
| 14955 | | |
| 14956 | | > hide #!24 models |
| 14957 | | |
| 14958 | | > show #!24 models |
| 14959 | | |
| 14960 | | > show #!25 models |
| 14961 | | |
| 14962 | | > hide #!25 models |
| 14963 | | |
| 14964 | | > show #!25 models |
| 14965 | | |
| 14966 | | > select add #25 |
| 14967 | | |
| 14968 | | 2 models selected |
| 14969 | | |
| 14970 | | > view matrix models |
| 14971 | | > #25,0.30125,-0.20502,-0.93124,395.8,0.88616,0.4208,0.19403,158.36,0.35209,-0.88368,0.30844,247.86 |
| 14972 | | |
| 14973 | | > view matrix models |
| 14974 | | > #25,0.30125,-0.20502,-0.93124,409.18,0.88616,0.4208,0.19403,140.07,0.35209,-0.88368,0.30844,349.72 |
| 14975 | | |
| 14976 | | > ui mousemode right "rotate selected models" |
| 14977 | | |
| 14978 | | > view matrix models |
| 14979 | | > #25,0.67645,-0.68438,0.27211,276.2,0.719,0.6937,-0.042662,155.46,-0.15957,0.22451,0.96132,195.14 |
| 14980 | | |
| 14981 | | > view matrix models |
| 14982 | | > #25,0.90086,-0.29707,-0.31655,276.98,0.27566,0.95477,-0.11151,182.83,0.33536,0.013191,0.942,166.85 |
| 14983 | | |
| 14984 | | > view matrix models |
| 14985 | | > #25,0.051634,0.99551,-0.079348,189.57,-0.99444,0.043954,-0.095665,432.86,-0.091748,0.083846,0.99225,200.46 |
| 14986 | | |
| 14987 | | > view matrix models |
| 14988 | | > #25,0.16593,0.98421,-0.061601,175.83,-0.9838,0.16092,-0.078982,415.66,-0.067822,0.073708,0.99497,198.63 |
| 14989 | | |
| 14990 | | > ui mousemode right "translate selected models" |
| 14991 | | |
| 14992 | | > view matrix models |
| 14993 | | > #25,0.16593,0.98421,-0.061601,175.86,-0.9838,0.16092,-0.078982,412.23,-0.067822,0.073708,0.99497,198.86 |
| 14994 | | |
| 14995 | | > fitmap #25 inMap #1 |
| 14996 | | |
| 14997 | | Fit map emd_3720_2017_leaf.map in map postprocess_20231221.mrc using 65799 |
| 14998 | | points |
| 14999 | | correlation = 0.701, correlation about mean = 0.05315, overlap = 29.32 |
| 15000 | | steps = 192, shift = 9.35, angle = 11.1 degrees |
| 15001 | | |
| 15002 | | Position of emd_3720_2017_leaf.map (#25) relative to postprocess_20231221.mrc |
| 15003 | | (#1) coordinates: |
| 15004 | | Matrix rotation and translation |
| 15005 | | 0.11163403 0.96487176 -0.23782420 100.11400997 |
| 15006 | | -0.99372584 0.11003505 -0.02003119 302.54909941 |
| 15007 | | 0.00684146 0.23856822 0.97110165 55.58840087 |
| 15008 | | Axis 0.12990453 -0.12290507 -0.98387965 |
| 15009 | | Axis point 217.66156287 86.02522080 0.00000000 |
| 15010 | | Rotation angle (degrees) 84.46893874 |
| 15011 | | Shift along axis -78.87185003 |
| 15012 | | |
| 15013 | | |
| 15014 | | > hide #!24 models |
| 15015 | | |
| 15016 | | > hide #3 models |
| 15017 | | |
| 15018 | | > hide #4 models |
| 15019 | | |
| 15020 | | > hide #5 models |
| 15021 | | |
| 15022 | | > hide #6 models |
| 15023 | | |
| 15024 | | > hide #7 models |
| 15025 | | |
| 15026 | | > hide #8 models |
| 15027 | | |
| 15028 | | > hide #!9 models |
| 15029 | | |
| 15030 | | > hide #10 models |
| 15031 | | |
| 15032 | | > hide #11 models |
| 15033 | | |
| 15034 | | > hide #12 models |
| 15035 | | |
| 15036 | | > show #!2 models |
| 15037 | | |
| 15038 | | > hide #!1 models |
| 15039 | | |
| 15040 | | > ui mousemode right "rotate selected models" |
| 15041 | | |
| 15042 | | > view matrix models |
| 15043 | | > #25,-0.63698,0.76915,-0.051509,297.36,-0.7325,-0.62474,-0.27045,503.5,-0.2402,-0.13454,0.96135,241.27 |
| 15044 | | |
| 15045 | | > ui mousemode right "translate selected models" |
| 15046 | | |
| 15047 | | > view matrix models |
| 15048 | | > #25,-0.63698,0.76915,-0.051509,313.09,-0.7325,-0.62474,-0.27045,513.45,-0.2402,-0.13454,0.96135,244.01 |
| 15049 | | |
| 15050 | | > fitmap #25 inMap #1 |
| 15051 | | |
| 15052 | | Fit map emd_3720_2017_leaf.map in map postprocess_20231221.mrc using 65799 |
| 15053 | | points |
| 15054 | | correlation = 0.7202, correlation about mean = 0.04691, overlap = 31.12 |
| 15055 | | steps = 68, shift = 2.64, angle = 2.35 degrees |
| 15056 | | |
| 15057 | | Position of emd_3720_2017_leaf.map (#25) relative to postprocess_20231221.mrc |
| 15058 | | (#1) coordinates: |
| 15059 | | Matrix rotation and translation |
| 15060 | | -0.62028881 0.78213998 -0.05915118 199.52960692 |
| 15061 | | -0.75199071 -0.61443165 -0.23871268 400.80293035 |
| 15062 | | -0.22305108 -0.10358966 0.96928706 124.65272239 |
| 15063 | | Axis 0.08724556 0.10582608 -0.99054987 |
| 15064 | | Axis point 202.82248950 157.96163882 0.00000000 |
| 15065 | | Rotation angle (degrees) 129.25084103 |
| 15066 | | Shift along axis -63.65126554 |
| 15067 | | |
| 15068 | | |
| 15069 | | > fitmap #25 inMap #1 |
| 15070 | | |
| 15071 | | Fit map emd_3720_2017_leaf.map in map postprocess_20231221.mrc using 65799 |
| 15072 | | points |
| 15073 | | correlation = 0.7202, correlation about mean = 0.04691, overlap = 31.12 |
| 15074 | | steps = 60, shift = 0.00106, angle = 0.00153 degrees |
| 15075 | | |
| 15076 | | Position of emd_3720_2017_leaf.map (#25) relative to postprocess_20231221.mrc |
| 15077 | | (#1) coordinates: |
| 15078 | | Matrix rotation and translation |
| 15079 | | -0.62027380 0.78215072 -0.05916661 199.52866252 |
| 15080 | | -0.75200210 -0.61442174 -0.23870231 400.80080185 |
| 15081 | | -0.22305443 -0.10356737 0.96928868 124.65051550 |
| 15082 | | Axis 0.08725203 0.10581679 -0.99055030 |
| 15083 | | Axis point 202.82380680 157.95891904 0.00000000 |
| 15084 | | Rotation angle (degrees) 129.24985933 |
| 15085 | | Shift along axis -63.65186843 |
| 15086 | | |
| 15087 | | |
| 15088 | | > view matrix models |
| 15089 | | > #25,-0.61957,0.78261,-0.060441,305.75,-0.75221,-0.61398,-0.23919,515.13,-0.2243,-0.10273,0.96909,279.3 |
| 15090 | | |
| 15091 | | > fitmap #25 inMap #1 |
| 15092 | | |
| 15093 | | Fit map emd_3720_2017_leaf.map in map postprocess_20231221.mrc using 65799 |
| 15094 | | points |
| 15095 | | correlation = 0.7136, correlation about mean = 0.2086, overlap = 51.77 |
| 15096 | | steps = 116, shift = 15, angle = 15.4 degrees |
| 15097 | | |
| 15098 | | Position of emd_3720_2017_leaf.map (#25) relative to postprocess_20231221.mrc |
| 15099 | | (#1) coordinates: |
| 15100 | | Matrix rotation and translation |
| 15101 | | -0.53778248 0.84255214 -0.02993196 166.42872750 |
| 15102 | | -0.84295720 -0.53797769 0.00178284 370.26748854 |
| 15103 | | -0.01460059 0.02619014 0.99955036 111.74859963 |
| 15104 | | Axis 0.01447855 -0.00909466 -0.99985382 |
| 15105 | | Axis point 185.21029499 138.57045048 0.00000000 |
| 15106 | | Rotation angle (degrees) 122.55472415 |
| 15107 | | Shift along axis -112.69007224 |
| 15108 | | |
| 15109 | | |
| 15110 | | > select subtract #25 |
| 15111 | | |
| 15112 | | Nothing selected |
| 15113 | | |
| 15114 | | > hide #!25 models |
| 15115 | | |
| 15116 | | > show #!26 models |
| 15117 | | |
| 15118 | | > select add #26 |
| 15119 | | |
| 15120 | | 2 models selected |
| 15121 | | |
| 15122 | | > view matrix models |
| 15123 | | > #26,-0.75258,0.45055,-0.48023,398.01,-0.63811,-0.67905,0.36292,440.39,-0.16258,0.57957,0.79854,206.22 |
| 15124 | | |
| 15125 | | > view matrix models |
| 15126 | | > #26,-0.75258,0.45055,-0.48023,400.22,-0.63811,-0.67905,0.36292,430.28,-0.16258,0.57957,0.79854,190.52 |
| 15127 | | |
| 15128 | | > fitmap #26 inMap #1 |
| 15129 | | |
| 15130 | | Fit map emd_3720_2017_leaf.map in map postprocess_20231221.mrc using 93502 |
| 15131 | | points |
| 15132 | | correlation = 0.6814, correlation about mean = 0.03275, overlap = 39.46 |
| 15133 | | steps = 124, shift = 28.5, angle = 15.4 degrees |
| 15134 | | |
| 15135 | | Position of emd_3720_2017_leaf.map (#26) relative to postprocess_20231221.mrc |
| 15136 | | (#1) coordinates: |
| 15137 | | Matrix rotation and translation |
| 15138 | | -0.80048790 0.52354068 -0.29176061 280.40193069 |
| 15139 | | -0.58964709 -0.77515357 0.22683301 354.89939910 |
| 15140 | | -0.10740297 0.35361289 0.92920530 65.62061675 |
| 15141 | | Axis 0.11165601 -0.16236519 -0.98039302 |
| 15142 | | Axis point 197.96082438 125.87878286 0.00000000 |
| 15143 | | Rotation angle (degrees) 145.40824645 |
| 15144 | | Shift along axis -90.64874260 |
| 15145 | | |
| 15146 | | |
| 15147 | | > color #26 #942192ff models |
| 15148 | | |
| 15149 | | > ui mousemode right "rotate selected models" |
| 15150 | | |
| 15151 | | > view matrix models |
| 15152 | | > #26,-0.3094,0.90104,-0.30396,293.42,-0.95088,-0.28979,0.10884,463.8,0.0099835,0.32271,0.94645,166.13 |
| 15153 | | |
| 15154 | | > ui mousemode right "translate selected models" |
| 15155 | | |
| 15156 | | > view matrix models |
| 15157 | | > #26,-0.3094,0.90104,-0.30396,284.24,-0.95088,-0.28979,0.10884,440.35,0.0099835,0.32271,0.94645,163.75 |
| 15158 | | |
| 15159 | | > view matrix models |
| 15160 | | > #26,-0.3094,0.90104,-0.30396,272,-0.95088,-0.28979,0.10884,447.96,0.0099835,0.32271,0.94645,177.38 |
| 15161 | | |
| 15162 | | > fitmap #26 inMap #1 |
| 15163 | | |
| 15164 | | Fit map emd_3720_2017_leaf.map in map postprocess_20231221.mrc using 93502 |
| 15165 | | points |
| 15166 | | correlation = 0.6077, correlation about mean = 0.05609, overlap = 37.22 |
| 15167 | | steps = 120, shift = 6.67, angle = 4.48 degrees |
| 15168 | | |
| 15169 | | Position of emd_3720_2017_leaf.map (#26) relative to postprocess_20231221.mrc |
| 15170 | | (#1) coordinates: |
| 15171 | | Matrix rotation and translation |
| 15172 | | -0.36623360 0.88241853 -0.29531417 171.46423215 |
| 15173 | | -0.92983541 -0.35924163 0.07969649 341.21826856 |
| 15174 | | -0.03576348 0.30378111 0.95207036 68.32737423 |
| 15175 | | Axis 0.12149399 -0.14072295 -0.98256616 |
| 15176 | | Axis point 200.93863242 103.81171509 0.00000000 |
| 15177 | | Rotation angle (degrees) 112.74947034 |
| 15178 | | Shift along axis -94.32153342 |
| 15179 | | |
| 15180 | | |
| 15181 | | > ui mousemode right "rotate selected models" |
| 15182 | | |
| 15183 | | > view matrix models |
| 15184 | | > #26,0.5533,-0.49401,-0.67068,388.41,0.45321,0.85409,-0.25521,191.27,0.69889,-0.16275,0.69646,183.19 |
| 15185 | | |
| 15186 | | > view matrix models |
| 15187 | | > #26,0.047803,-0.54747,-0.83546,471.47,0.78383,0.53901,-0.30836,197.77,0.61914,-0.64012,0.45489,277.77 |
| 15188 | | |
| 15189 | | > view matrix models |
| 15190 | | > #26,-0.59372,0.26561,-0.75957,437.99,0.11032,-0.90817,-0.40381,458.19,-0.79708,-0.32354,0.50989,393.77 |
| 15191 | | |
| 15192 | | > view matrix models |
| 15193 | | > #26,-0.86755,0.4472,0.21766,331.93,-0.045965,-0.50786,0.86021,278.84,0.49523,0.73627,0.46115,126.6 |
| 15194 | | |
| 15195 | | > view matrix models |
| 15196 | | > #26,-0.50461,0.3957,-0.76733,413.27,-0.62236,-0.78271,0.0056417,477.81,-0.59836,0.4804,0.64123,259.72 |
| 15197 | | |
| 15198 | | > view matrix models |
| 15199 | | > #26,-0.018439,0.87805,-0.47821,266.48,-0.99131,-0.07836,-0.10565,448.55,-0.13024,0.47211,0.87187,180.49 |
| 15200 | | |
| 15201 | | > fitmap #26 inMap #1 |
| 15202 | | |
| 15203 | | Fit map emd_3720_2017_leaf.map in map postprocess_20231221.mrc using 93502 |
| 15204 | | points |
| 15205 | | correlation = 0.643, correlation about mean = 0.05332, overlap = 36.5 |
| 15206 | | steps = 128, shift = 10, angle = 3.19 degrees |
| 15207 | | |
| 15208 | | Position of emd_3720_2017_leaf.map (#26) relative to postprocess_20231221.mrc |
| 15209 | | (#1) coordinates: |
| 15210 | | Matrix rotation and translation |
| 15211 | | -0.04984739 0.89805451 -0.43705068 146.96444675 |
| 15212 | | -0.99215656 -0.09475011 -0.08153366 331.54326175 |
| 15213 | | -0.11463228 0.42955846 0.89573374 60.08760303 |
| 15214 | | Axis 0.25754769 -0.16247191 -0.95250830 |
| 15215 | | Axis point 229.66777164 83.83264256 0.00000000 |
| 15216 | | Rotation angle (degrees) 97.14794883 |
| 15217 | | Shift along axis -73.25005349 |
| 15218 | | |
| 15219 | | |
| 15220 | | > view matrix models |
| 15221 | | > #26,-0.072354,0.97321,0.21824,175.47,-0.95136,-0.13304,0.27786,401.14,0.29945,-0.18752,0.9355,194.35 |
| 15222 | | |
| 15223 | | > ui mousemode right "translate selected models" |
| 15224 | | |
| 15225 | | > view matrix models |
| 15226 | | > #26,-0.072354,0.97321,0.21824,181.5,-0.95136,-0.13304,0.27786,422.24,0.29945,-0.18752,0.9355,225.11 |
| 15227 | | |
| 15228 | | > ui mousemode right "rotate selected models" |
| 15229 | | |
| 15230 | | > view matrix models |
| 15231 | | > #26,-0.55847,0.82251,0.10764,267.59,-0.82054,-0.5668,0.073894,483.33,0.12179,-0.047053,0.99144,221.84 |
| 15232 | | |
| 15233 | | > fitmap #26 inMap #1 |
| 15234 | | |
| 15235 | | Fit map emd_3720_2017_leaf.map in map postprocess_20231221.mrc using 93502 |
| 15236 | | points |
| 15237 | | correlation = 0.704, correlation about mean = 0.2338, overlap = 60.62 |
| 15238 | | steps = 116, shift = 10.2, angle = 9.2 degrees |
| 15239 | | |
| 15240 | | Position of emd_3720_2017_leaf.map (#26) relative to postprocess_20231221.mrc |
| 15241 | | (#1) coordinates: |
| 15242 | | Matrix rotation and translation |
| 15243 | | -0.53804057 0.84238896 -0.02988589 166.48440525 |
| 15244 | | -0.84278216 -0.53825370 0.00107146 370.35180431 |
| 15245 | | -0.01518361 0.02576378 0.99955273 111.83435343 |
| 15246 | | Axis 0.01465058 -0.00872323 -0.99985462 |
| 15247 | | Axis point 185.24518036 138.63002335 0.00000000 |
| 15248 | | Rotation angle (degrees) 122.57279905 |
| 15249 | | Shift along axis -112.60966719 |
| 15250 | | |
| 15251 | | |
| 15252 | | > select subtract #26 |
| 15253 | | |
| 15254 | | Nothing selected |
| 15255 | | |
| 15256 | | > hide #!26 models |
| 15257 | | |
| 15258 | | > color #26 #f6f9afff models |
| 15259 | | |
| 15260 | | > show #!25 models |
| 15261 | | |
| 15262 | | > color #25 #f9f9b4ff models |
| 15263 | | |
| 15264 | | > show #!26 models |
| 15265 | | |
| 15266 | | > hide #!25 models |
| 15267 | | |
| 15268 | | > show #!25 models |
| 15269 | | |
| 15270 | | > hide #!26 models |
| 15271 | | |
| 15272 | | > show #!26 models |
| 15273 | | |
| 15274 | | > hide #!26 models |
| 15275 | | |
| 15276 | | > show #!26 models |
| 15277 | | |
| 15278 | | > hide #!26 models |
| 15279 | | |
| 15280 | | > hide #!25 models |
| 15281 | | |
| 15282 | | > show #!1 models |
| 15283 | | |
| 15284 | | > show #!24 models |
| 15285 | | |
| 15286 | | > fitmap #24 inMap #1 |
| 15287 | | |
| 15288 | | Fit map postprocess_20231221.mrc in map postprocess_20231221.mrc using 6862 |
| 15289 | | points |
| 15290 | | correlation = 1, correlation about mean = 0.9998, overlap = 0.8994 |
| 15291 | | steps = 44, shift = 0.0835, angle = 0.0216 degrees |
| 15292 | | |
| 15293 | | Position of postprocess_20231221.mrc (#24) relative to |
| 15294 | | postprocess_20231221.mrc (#1) coordinates: |
| 15295 | | Matrix rotation and translation |
| 15296 | | 0.99999998 0.00009904 -0.00019217 0.02086519 |
| 15297 | | -0.00009901 0.99999999 0.00013925 0.00946728 |
| 15298 | | 0.00019218 -0.00013923 0.99999997 -0.04895539 |
| 15299 | | Axis -0.54148696 -0.74733003 -0.38508401 |
| 15300 | | Axis point 253.79232735 0.00000000 109.89549266 |
| 15301 | | Rotation angle (degrees) 0.01473352 |
| 15302 | | Shift along axis 0.00047852 |
| 15303 | | |
| 15304 | | |
| 15305 | | > hide #!24 models |
| 15306 | | |
| 15307 | | > show #!25 models |
| 15308 | | |
| 15309 | | > hide #!25 models |
| 15310 | | |
| 15311 | | > rename #26 id #40 |
| 15312 | | |
| 15313 | | > show #3 models |
| 15314 | | |
| 15315 | | > combine #3 modelId #26 |
| 15316 | | |
| 15317 | | > select add #26 |
| 15318 | | |
| 15319 | | 9810 atoms, 10032 bonds, 1233 residues, 1 model selected |
| 15320 | | |
| 15321 | | > select subtract #26 |
| 15322 | | |
| 15323 | | Nothing selected |
| 15324 | | |
| 15325 | | > select add #26 |
| 15326 | | |
| 15327 | | 9810 atoms, 10032 bonds, 1233 residues, 1 model selected |
| 15328 | | |
| 15329 | | > select subtract #26 |
| 15330 | | |
| 15331 | | Nothing selected |
| 15332 | | |
| 15333 | | > hide #26 models |
| 15334 | | |
| 15335 | | > combine #4 modelId #27 |
| 15336 | | |
| 15337 | | > hide #27 models |
| 15338 | | |
| 15339 | | > combine #5 modelId #26 |
| 15340 | | |
| 15341 | | Traceback (most recent call last): |
| 15342 | | File |
| 15343 | | "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- |
| 15344 | | packages/chimerax/cmd_line/tool.py", line 319, in execute |
| 15345 | | cmd.run(cmd_text) |
| 15346 | | File |
| 15347 | | "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- |
| 15348 | | packages/chimerax/core/commands/cli.py", line 2897, in run |
| 15349 | | result = ci.function(session, **kw_args) |
| 15350 | | File |
| 15351 | | "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- |
| 15352 | | packages/chimerax/atomic/cmd.py", line 80, in combine_cmd |
| 15353 | | session.models.add([combination]) |
| 15354 | | File |
| 15355 | | "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- |
| 15356 | | packages/chimerax/core/models.py", line 699, in add |
| 15357 | | p = self._parent_for_added_model(model, parent, root_model = root_model) |
| 15358 | | File |
| 15359 | | "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- |
| 15360 | | packages/chimerax/core/models.py", line 766, in _parent_for_added_model |
| 15361 | | raise ValueError('Tried to add model %s with the same id as another model %s' |
| 15362 | | ValueError: Tried to add model copy of hArf1_P84078 #26 with the same id as |
| 15363 | | another model copy of CopA_F8WHL2.pdb #26 |
| 15364 | | |
| 15365 | | ValueError: Tried to add model copy of hArf1_P84078 #26 with the same id as |
| 15366 | | another model copy of CopA_F8WHL2.pdb #26 |
| 15367 | | |
| 15368 | | File |
| 15369 | | "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- |
| 15370 | | packages/chimerax/core/models.py", line 766, in _parent_for_added_model |
| 15371 | | raise ValueError('Tried to add model %s with the same id as another model %s' |
| 15372 | | |
| 15373 | | See log for complete Python traceback. |
| 15374 | | |
| 15375 | | |
| 15376 | | > combine #5 modelId #28 |
| 15377 | | |
| 15378 | | > combine #6 modelId #29 |
| 15379 | | |
| 15380 | | > combine #7 modelId #30 |
| 15381 | | |
| 15382 | | > combine #8 modelId #31 |
| 15383 | | |
| 15384 | | > combine #9 modelId #32 |
| 15385 | | |
| 15386 | | > combine #10 modelId #33 |
| 15387 | | |
| 15388 | | > combine #11 modelId #34 |
| 15389 | | |
| 15390 | | > combine #12 modelId #35 |
| 15391 | | |
| 15392 | | > show #27 models |
| 15393 | | |
| 15394 | | > show #26 models |
| 15395 | | |
| 15396 | | > show #!25 models |
| 15397 | | |
| 15398 | | > show #!24 models |
| 15399 | | |
| 15400 | | > hide #3 models |
| 15401 | | |
| 15402 | | > select add #24 |
| 15403 | | |
| 15404 | | 2 models selected |
| 15405 | | |
| 15406 | | > select add #25 |
| 15407 | | |
| 15408 | | 4 models selected |
| 15409 | | |
| 15410 | | > select add #26 |
| 15411 | | |
| 15412 | | 9810 atoms, 10032 bonds, 1233 residues, 5 models selected |
| 15413 | | |
| 15414 | | > select add #27 |
| 15415 | | |
| 15416 | | 17311 atoms, 17651 bonds, 2186 residues, 6 models selected |
| 15417 | | |
| 15418 | | > select add #28 |
| 15419 | | |
| 15420 | | 18768 atoms, 19134 bonds, 2367 residues, 7 models selected |
| 15421 | | |
| 15422 | | > select add #29 |
| 15423 | | |
| 15424 | | 20225 atoms, 20617 bonds, 2548 residues, 8 models selected |
| 15425 | | |
| 15426 | | > select add #30 |
| 15427 | | |
| 15428 | | 27439 atoms, 27990 bonds, 3453 residues, 9 models selected |
| 15429 | | |
| 15430 | | > select add #31 |
| 15431 | | |
| 15432 | | 28901 atoms, 29471 bonds, 3632 residues, 10 models selected |
| 15433 | | |
| 15434 | | > select add #32 |
| 15435 | | |
| 15436 | | 35574 atoms, 36257 bonds, 1 pseudobond, 4485 residues, 12 models selected |
| 15437 | | |
| 15438 | | > select add #33 |
| 15439 | | |
| 15440 | | 36994 atoms, 37698 bonds, 1 pseudobond, 4662 residues, 13 models selected |
| 15441 | | |
| 15442 | | > select add #34 |
| 15443 | | |
| 15444 | | 39361 atoms, 40096 bonds, 1 pseudobond, 4960 residues, 14 models selected |
| 15445 | | |
| 15446 | | > select add #35 |
| 15447 | | |
| 15448 | | 40824 atoms, 41582 bonds, 1 pseudobond, 5145 residues, 15 models selected |
| 15449 | | |
| 15450 | | > show #!13 models |
| 15451 | | |
| 15452 | | > view matrix models |
| 15453 | | > #25,-0.34889,0.93716,-0.003888,242.9,-0.93695,-0.34889,-0.019709,475.09,-0.019827,-0.0032334,0.9998,227.68,#24,0.97737,-0.20999,0.025535,155.17,0.21041,0.9775,-0.015062,79.841,-0.021798,0.020094,0.99956,112.1,#26,0.9145,0.2542,0.31475,268.43,-0.0087926,0.79028,-0.61269,349.5,-0.40449,0.55754,0.72494,352.58,#27,-0.028359,-0.84788,0.52942,286,-0.059539,0.53013,0.84583,313.33,-0.99782,-0.0075343,-0.065516,349,#28,0.31644,0.15578,0.93574,241.47,-0.64886,-0.68403,0.3333,299.86,0.69199,-0.71263,-0.11537,291.74,#29,-0.71941,-0.60958,0.33295,357.19,-0.64676,0.41312,-0.64112,319.13,0.25327,-0.67657,-0.69145,331.26,#30,-0.18159,0.036625,-0.98269,308.25,-0.032973,-0.99897,-0.031139,289.3,-0.98282,0.026748,0.18261,350.04,#31,0.43065,0.88133,0.19441,54.266,-0.82145,0.29354,0.48893,156.38,0.37384,-0.37026,0.85039,588.54,#32,0.34531,-0.42427,-0.83711,320.98,0.64973,-0.53557,0.53946,398.89,-0.67721,-0.73018,0.090725,371.57,#33,0.26632,-0.95725,-0.11288,335.32,-0.35637,0.011022,-0.93428,361.06,0.89559,0.28904,-0.3382,330.07,#34,0.798,-0.13224,0.58798,304.64,-0.53929,-0.59219,0.59873,346.6,0.26901,-0.79488,-0.54388,303.77,#35,-0.87975,0.093127,-0.46623,334.26,0.2392,0.93418,-0.26476,361.44,0.41089,-0.34444,-0.84411,329.19 |
| 15454 | | |
| 15455 | | > ui mousemode right "translate selected models" |
| 15456 | | |
| 15457 | | > view matrix models |
| 15458 | | > #25,-0.34889,0.93716,-0.003888,259.26,-0.93695,-0.34889,-0.019709,272.45,-0.019827,-0.0032334,0.9998,250.74,#24,0.97737,-0.20999,0.025535,171.52,0.21041,0.9775,-0.015062,-122.8,-0.021798,0.020094,0.99956,135.16,#26,0.9145,0.2542,0.31475,284.79,-0.0087926,0.79028,-0.61269,146.86,-0.40449,0.55754,0.72494,375.64,#27,-0.028359,-0.84788,0.52942,302.35,-0.059539,0.53013,0.84583,110.69,-0.99782,-0.0075343,-0.065516,372.05,#28,0.31644,0.15578,0.93574,257.82,-0.64886,-0.68403,0.3333,97.217,0.69199,-0.71263,-0.11537,314.79,#29,-0.71941,-0.60958,0.33295,373.55,-0.64676,0.41312,-0.64112,116.49,0.25327,-0.67657,-0.69145,354.31,#30,-0.18159,0.036625,-0.98269,324.61,-0.032973,-0.99897,-0.031139,86.663,-0.98282,0.026748,0.18261,373.09,#31,0.43065,0.88133,0.19441,70.621,-0.82145,0.29354,0.48893,-46.259,0.37384,-0.37026,0.85039,611.6,#32,0.34531,-0.42427,-0.83711,337.33,0.64973,-0.53557,0.53946,196.25,-0.67721,-0.73018,0.090725,394.62,#33,0.26632,-0.95725,-0.11288,351.67,-0.35637,0.011022,-0.93428,158.42,0.89559,0.28904,-0.3382,353.12,#34,0.798,-0.13224,0.58798,321,-0.53929,-0.59219,0.59873,143.96,0.26901,-0.79488,-0.54388,326.82,#35,-0.87975,0.093127,-0.46623,350.61,0.2392,0.93418,-0.26476,158.8,0.41089,-0.34444,-0.84411,352.24 |
| 15459 | | |
| 15460 | | > view matrix models |
| 15461 | | > #25,-0.34889,0.93716,-0.003888,248.71,-0.93695,-0.34889,-0.019709,636.82,-0.019827,-0.0032334,0.9998,207.75,#24,0.97737,-0.20999,0.025535,160.98,0.21041,0.9775,-0.015062,241.57,-0.021798,0.020094,0.99956,92.166,#26,0.9145,0.2542,0.31475,274.24,-0.0087926,0.79028,-0.61269,511.23,-0.40449,0.55754,0.72494,332.65,#27,-0.028359,-0.84788,0.52942,291.81,-0.059539,0.53013,0.84583,475.06,-0.99782,-0.0075343,-0.065516,329.06,#28,0.31644,0.15578,0.93574,247.28,-0.64886,-0.68403,0.3333,461.59,0.69199,-0.71263,-0.11537,271.8,#29,-0.71941,-0.60958,0.33295,363,-0.64676,0.41312,-0.64112,480.86,0.25327,-0.67657,-0.69145,311.32,#30,-0.18159,0.036625,-0.98269,314.06,-0.032973,-0.99897,-0.031139,451.03,-0.98282,0.026748,0.18261,330.11,#31,0.43065,0.88133,0.19441,60.076,-0.82145,0.29354,0.48893,318.11,0.37384,-0.37026,0.85039,568.61,#32,0.34531,-0.42427,-0.83711,326.79,0.64973,-0.53557,0.53946,560.62,-0.67721,-0.73018,0.090725,351.64,#33,0.26632,-0.95725,-0.11288,341.13,-0.35637,0.011022,-0.93428,522.79,0.89559,0.28904,-0.3382,310.14,#34,0.798,-0.13224,0.58798,310.45,-0.53929,-0.59219,0.59873,508.33,0.26901,-0.79488,-0.54388,283.84,#35,-0.87975,0.093127,-0.46623,340.07,0.2392,0.93418,-0.26476,523.16,0.41089,-0.34444,-0.84411,309.25 |
| 15462 | | |
| 15463 | | > ui mousemode right "rotate selected models" |
| 15464 | | |
| 15465 | | > view matrix models |
| 15466 | | > #25,0.18237,0.97993,0.080544,169.64,-0.98154,0.18625,-0.043568,594.7,-0.057694,-0.071112,0.9958,219.25,#24,0.72524,-0.6807,0.10328,289.46,0.686,0.72719,-0.02437,214.03,-0.058512,0.088521,0.99435,85.025,#26,0.75605,-0.14818,0.63752,265.26,0.47541,0.7938,-0.3793,497.36,-0.44986,0.58986,0.67059,335.05,#27,-0.06719,-0.99766,0.012461,298.61,-0.040957,0.015236,0.99904,475.59,-0.9969,0.066615,-0.041885,328.44,#28,0.65513,0.43237,0.61956,263.27,-0.40857,-0.48705,0.77192,442.45,0.63551,-0.75884,-0.14243,272.8,#29,-0.26333,-0.78321,0.56324,355.15,-0.93163,0.054896,-0.35923,517.81,0.25043,-0.61933,-0.74412,307.52,#30,-0.21067,0.54708,-0.81013,330.06,-0.097844,-0.83637,-0.53936,466.52,-0.97265,-0.034359,0.22973,326.94,#31,0.81803,0.57472,-0.022662,199.01,-0.4893,0.71607,0.49783,215.56,0.30234,-0.39615,0.86698,569.64,#32,-0.089093,-0.14088,-0.98601,286.16,0.75118,-0.65958,0.026363,566.32,-0.65406,-0.73832,0.16459,354.25,#33,0.47688,-0.80224,0.35916,314.81,-0.18928,-0.49276,-0.84933,542.4,0.85834,0.33705,-0.38684,309.92,#34,0.97903,0.13299,0.15431,294.1,-0.055335,-0.55539,0.82975,514.82,0.19604,-0.82089,-0.53639,284.39,#35,-0.84439,-0.42632,-0.32442,313.64,-0.26047,0.85589,-0.44678,542.2,0.46814,-0.29275,-0.83375,309.11 |
| 15467 | | |
| 15468 | | > view matrix models |
| 15469 | | > #25,0.21528,0.97374,-0.074004,187.61,-0.96375,0.19962,-0.17704,606.21,-0.15762,0.10943,0.98142,212.92,#24,0.70693,-0.70538,-0.051845,336.95,0.69167,0.70478,-0.1577,247.8,0.14778,0.07562,0.98613,50.064,#26,0.80378,-0.25918,0.53551,266.65,0.53597,0.70614,-0.46272,494.68,-0.25821,0.65894,0.70649,328.42,#27,0.089621,-0.99594,-0.0078889,301.19,0.093512,0.00052849,0.99562,474.19,-0.99158,-0.089966,0.09318,324.33,#28,0.55913,0.55788,0.61331,275.82,-0.48688,-0.37781,0.78753,448.66,0.67106,-0.73894,0.060377,259.93,#29,-0.27405,-0.67866,0.68141,359.14,-0.95836,0.13355,-0.25242,519.16,0.080305,-0.72221,-0.687,318.35,#30,-0.05431,0.56793,-0.82128,332.72,0.033072,-0.82102,-0.56994,465.58,-0.99798,-0.058115,0.025807,326.61,#31,0.77391,0.60995,-0.17038,172.31,-0.52102,0.76617,0.3762,183.44,0.36,-0.20238,0.91074,510.27,#32,-0.0064415,-0.006784,-0.99996,282.45,0.83203,-0.55473,-0.0015962,560.54,-0.5547,-0.832,0.0092177,359.63,#33,0.34263,-0.8314,0.43747,318.27,-0.30066,-0.5382,-0.78736,542.98,0.89006,0.13825,-0.43437,317.59,#34,0.93781,0.2737,0.21353,302.52,-0.075794,-0.43883,0.89537,518.97,0.33876,-0.85587,-0.3908,285.69,#35,-0.8996,-0.39839,-0.17889,317.26,-0.32596,0.88516,-0.33204,542.88,0.29063,-0.24039,-0.92615,316.59 |
| 15470 | | |
| 15471 | | > ui mousemode right "translate selected models" |
| 15472 | | |
| 15473 | | > view matrix models |
| 15474 | | > #25,0.21528,0.97374,-0.074004,186.53,-0.96375,0.19962,-0.17704,728.02,-0.15762,0.10943,0.98142,198.35,#24,0.70693,-0.70538,-0.051845,335.87,0.69167,0.70478,-0.1577,369.61,0.14778,0.07562,0.98613,35.494,#26,0.80378,-0.25918,0.53551,265.57,0.53597,0.70614,-0.46272,616.5,-0.25821,0.65894,0.70649,313.85,#27,0.089621,-0.99594,-0.0078889,300.1,0.093512,0.00052849,0.99562,596,-0.99158,-0.089966,0.09318,309.76,#28,0.55913,0.55788,0.61331,274.74,-0.48688,-0.37781,0.78753,570.47,0.67106,-0.73894,0.060377,245.36,#29,-0.27405,-0.67866,0.68141,358.06,-0.95836,0.13355,-0.25242,640.97,0.080305,-0.72221,-0.687,303.78,#30,-0.05431,0.56793,-0.82128,331.64,0.033072,-0.82102,-0.56994,587.39,-0.99798,-0.058115,0.025807,312.04,#31,0.77391,0.60995,-0.17038,171.23,-0.52102,0.76617,0.3762,305.26,0.36,-0.20238,0.91074,495.7,#32,-0.0064415,-0.006784,-0.99996,281.37,0.83203,-0.55473,-0.0015962,682.35,-0.5547,-0.832,0.0092177,345.06,#33,0.34263,-0.8314,0.43747,317.19,-0.30066,-0.5382,-0.78736,664.79,0.89006,0.13825,-0.43437,303.02,#34,0.93781,0.2737,0.21353,301.44,-0.075794,-0.43883,0.89537,640.78,0.33876,-0.85587,-0.3908,271.12,#35,-0.8996,-0.39839,-0.17889,316.17,-0.32596,0.88516,-0.33204,664.69,0.29063,-0.24039,-0.92615,302.02 |
| 15475 | | |
| 15476 | | > view matrix models |
| 15477 | | > #25,0.21528,0.97374,-0.074004,221.97,-0.96375,0.19962,-0.17704,638.99,-0.15762,0.10943,0.98142,223.97,#24,0.70693,-0.70538,-0.051845,371.32,0.69167,0.70478,-0.1577,280.59,0.14778,0.07562,0.98613,61.119,#26,0.80378,-0.25918,0.53551,301.01,0.53597,0.70614,-0.46272,527.47,-0.25821,0.65894,0.70649,339.47,#27,0.089621,-0.99594,-0.0078889,335.55,0.093512,0.00052849,0.99562,506.98,-0.99158,-0.089966,0.09318,335.39,#28,0.55913,0.55788,0.61331,310.18,-0.48688,-0.37781,0.78753,481.44,0.67106,-0.73894,0.060377,270.98,#29,-0.27405,-0.67866,0.68141,393.5,-0.95836,0.13355,-0.25242,551.95,0.080305,-0.72221,-0.687,329.4,#30,-0.05431,0.56793,-0.82128,367.08,0.033072,-0.82102,-0.56994,498.37,-0.99798,-0.058115,0.025807,337.67,#31,0.77391,0.60995,-0.17038,206.67,-0.52102,0.76617,0.3762,216.23,0.36,-0.20238,0.91074,521.32,#32,-0.0064415,-0.006784,-0.99996,316.81,0.83203,-0.55473,-0.0015962,593.32,-0.5547,-0.832,0.0092177,370.69,#33,0.34263,-0.8314,0.43747,352.63,-0.30066,-0.5382,-0.78736,575.76,0.89006,0.13825,-0.43437,328.65,#34,0.93781,0.2737,0.21353,336.88,-0.075794,-0.43883,0.89537,551.76,0.33876,-0.85587,-0.3908,296.75,#35,-0.8996,-0.39839,-0.17889,351.62,-0.32596,0.88516,-0.33204,575.66,0.29063,-0.24039,-0.92615,327.65 |
| 15478 | | |
| 15479 | | > view matrix models |
| 15480 | | > #25,0.21528,0.97374,-0.074004,190.23,-0.96375,0.19962,-0.17704,638.64,-0.15762,0.10943,0.98142,205.91,#24,0.70693,-0.70538,-0.051845,339.58,0.69167,0.70478,-0.1577,280.23,0.14778,0.07562,0.98613,43.056,#26,0.80378,-0.25918,0.53551,269.27,0.53597,0.70614,-0.46272,527.12,-0.25821,0.65894,0.70649,321.41,#27,0.089621,-0.99594,-0.0078889,303.81,0.093512,0.00052849,0.99562,506.62,-0.99158,-0.089966,0.09318,317.32,#28,0.55913,0.55788,0.61331,278.44,-0.48688,-0.37781,0.78753,481.09,0.67106,-0.73894,0.060377,252.92,#29,-0.27405,-0.67866,0.68141,361.76,-0.95836,0.13355,-0.25242,551.59,0.080305,-0.72221,-0.687,311.34,#30,-0.05431,0.56793,-0.82128,335.34,0.033072,-0.82102,-0.56994,498.01,-0.99798,-0.058115,0.025807,319.61,#31,0.77391,0.60995,-0.17038,174.93,-0.52102,0.76617,0.3762,215.88,0.36,-0.20238,0.91074,503.26,#32,-0.0064415,-0.006784,-0.99996,285.07,0.83203,-0.55473,-0.0015962,592.97,-0.5547,-0.832,0.0092177,352.63,#33,0.34263,-0.8314,0.43747,320.9,-0.30066,-0.5382,-0.78736,575.41,0.89006,0.13825,-0.43437,310.59,#34,0.93781,0.2737,0.21353,305.14,-0.075794,-0.43883,0.89537,551.4,0.33876,-0.85587,-0.3908,278.69,#35,-0.8996,-0.39839,-0.17889,319.88,-0.32596,0.88516,-0.33204,575.31,0.29063,-0.24039,-0.92615,309.59 |
| 15481 | | |
| 15482 | | > ui mousemode right "rotate selected models" |
| 15483 | | |
| 15484 | | > view matrix models |
| 15485 | | > #25,0.50923,0.84815,0.14602,141.9,-0.85927,0.51059,0.03087,569.07,-0.048376,-0.14119,0.9888,217.99,#24,0.4365,-0.88527,0.16053,379.09,0.89134,0.44977,0.056666,247.89,-0.12237,0.11835,0.9854,84.349,#26,0.51686,-0.38221,0.76601,271.72,0.68743,0.71858,-0.10529,516.05,-0.5102,0.581,0.63415,329.17,#27,-0.10416,-0.93516,-0.33857,310.14,-0.10551,-0.32811,0.93873,506.9,-0.98895,0.1335,-0.064494,320.81,#28,0.79073,0.53192,0.30302,285.51,-0.12816,-0.34017,0.93159,461.16,0.5986,-0.77547,-0.20081,268.42,#29,0.091956,-0.78651,0.61069,347.17,-0.95321,-0.2469,-0.17445,565.11,0.28798,-0.56608,-0.77241,295.19,#30,-0.21726,0.80127,-0.55747,342.64,-0.20742,-0.59596,-0.77576,509.22,-0.95382,-0.052911,0.29567,317.38,#31,0.95271,0.26637,-0.14626,320.93,-0.1621,0.85256,0.49685,239.34,0.25704,-0.44965,0.85542,573.82,#32,-0.38139,0.056717,-0.92267,268.33,0.64435,-0.69938,-0.30934,588.75,-0.66284,-0.7125,0.23019,345.41,#33,0.55998,-0.56032,0.61029,301,0.025451,-0.72464,-0.68866,574.3,0.82811,0.40117,-0.39152,299.77,#34,0.94633,0.2721,-0.17443,289.8,0.29564,-0.51058,0.80741,540.15,0.13064,-0.81564,-0.56362,276.31,#35,-0.67336,-0.71329,-0.19445,299.93,-0.51577,0.64165,-0.56768,573.67,0.52969,-0.28196,-0.79995,299.05 |
| 15486 | | |
| 15487 | | > view matrix models |
| 15488 | | > #25,0.42548,0.84231,-0.33087,215.81,-0.77652,0.52757,0.3445,513.87,0.46474,0.11035,0.87855,153.55,#24,0.4908,-0.81231,-0.31508,470.14,0.85183,0.3714,0.36939,193.32,-0.18304,-0.44969,0.87423,252.75,#26,0.73166,-0.56955,0.37455,275.65,0.5491,0.81802,0.17126,510.7,-0.40393,0.080366,0.91125,322.17,#27,0.36385,-0.90563,-0.21784,312.97,-0.41097,-0.36596,0.83498,503.43,-0.8359,-0.21428,-0.50533,335.73,#28,0.41171,0.81299,0.41176,313.2,0.14132,-0.50332,0.85247,441.67,0.90029,-0.29278,-0.32212,295.37,#29,-0.10494,-0.44353,0.8901,360.78,-0.80605,-0.48629,-0.33735,554.58,0.58247,-0.75286,-0.30647,313.05,#30,0.24209,0.69968,-0.67219,343.39,-0.5084,-0.4986,-0.70209,507.91,-0.82639,0.51171,0.23502,347.06,#31,0.71227,0.49124,-0.50135,189.91,0.022018,0.69828,0.71548,327.93,0.70156,-0.52065,0.48655,635.35,#32,0.0076163,0.34462,-0.93871,269.02,0.37001,-0.87308,-0.31753,584.15,-0.929,-0.34491,-0.13416,311.14,#33,0.10925,-0.72117,0.68409,318.38,0.33293,-0.62191,-0.70879,559.95,0.9366,0.30519,0.17215,292.78,#34,0.79046,0.59314,0.15285,317.59,0.41656,-0.70353,0.57578,519.33,0.44905,-0.39146,-0.80319,278.94,#35,-0.86959,-0.46326,0.17086,317.74,-0.39659,0.44918,-0.8006,559.02,0.29414,-0.76395,-0.57433,291.89 |
| 15489 | | |
| 15490 | | > view matrix models |
| 15491 | | > #25,0.48491,0.64504,-0.59058,264.36,-0.71196,0.68334,0.16178,512.71,0.50792,0.34202,0.7906,133.62,#24,0.30034,-0.75672,-0.58066,559.49,0.95379,0.23289,0.18985,246.55,-0.0084323,-0.61085,0.7917,272.67,#26,0.64964,-0.75219,0.11033,284.18,0.73824,0.65882,0.14476,503.64,-0.18158,-0.012587,0.9833,311.24,#27,0.62819,-0.72051,-0.29367,318.18,-0.22379,-0.52881,0.8187,503.23,-0.74518,-0.44859,-0.49344,333,#28,0.15507,0.95405,0.25641,342.17,0.12514,-0.27643,0.95285,448.01,0.97995,-0.11567,-0.16225,290.36,#29,-0.03546,-0.13522,0.99018,356.15,-0.87015,-0.48312,-0.097137,565.85,0.49151,-0.86505,-0.10053,325.62,#30,0.53437,0.66699,-0.51921,343.34,-0.34598,-0.38786,-0.85432,512.96,-0.7712,0.63616,0.023504,351.61,#31,0.51188,0.41262,-0.75347,177.33,0.097903,0.84336,0.52836,272.24,0.85346,-0.34422,0.3913,583.04,#32,0.12504,0.61164,-0.78119,262.77,0.46553,-0.73148,-0.49821,574.62,-0.87615,-0.30138,-0.3762,303.24,#33,-0.18477,-0.60032,0.77812,319.29,0.24043,-0.79531,-0.55649,564.06,0.95292,0.084257,0.29128,296.02,#34,0.54734,0.8162,0.185,331.36,0.52601,-0.50744,0.68251,526.09,0.65095,-0.27625,-0.70707,280.05,#35,-0.79214,-0.37564,0.48105,319.11,-0.60823,0.42036,-0.67332,563.12,0.050705,-0.82595,-0.56146,294.95 |
| 15492 | | |
| 15493 | | > view matrix models |
| 15494 | | > #25,0.62413,0.55993,-0.54492,253.09,-0.58658,0.79651,0.14661,486.98,0.51613,0.22813,0.82557,141.89,#24,0.15242,-0.82823,-0.53926,594.69,0.98219,0.06629,0.17579,279.35,-0.10985,-0.55646,0.82358,274.11,#26,0.51555,-0.84112,0.16346,287.79,0.80395,0.54083,0.24732,496.93,-0.29643,0.0039063,0.95505,317.17,#27,0.59482,-0.66576,-0.4505,323.06,-0.19826,-0.66461,0.7204,503.34,-0.77903,-0.33919,-0.52732,335.74,#28,0.21023,0.9728,0.097302,351.67,0.23406,-0.14671,0.96109,448.48,0.94922,-0.17927,-0.25854,295.56,#29,0.13366,-0.12808,0.98272,350.52,-0.81827,-0.57368,0.036526,569.81,0.55908,-0.809,-0.18149,320.11,#30,0.51863,0.76498,-0.38188,347.84,-0.33444,-0.22956,-0.91403,518.2,-0.78688,0.60176,0.13678,351.19,#31,0.55617,0.25355,-0.79144,238.28,0.24672,0.85902,0.44858,278.17,0.7936,-0.44475,0.41521,614.71,#32,-0.014613,0.68908,-0.72454,255.42,0.39749,-0.66089,-0.63657,563.1,-0.91749,-0.29729,-0.26424,305.62,#33,-0.14411,-0.46595,0.873,312.16,0.29674,-0.86196,-0.41107,560.11,0.94402,0.19981,0.26248,294.18,#34,0.51122,0.85908,0.025109,328.5,0.65543,-0.4086,0.63519,522.97,0.55594,-0.30827,-0.77195,280.2,#35,-0.68567,-0.49743,0.53144,312.04,-0.70798,0.28603,-0.64572,559.07,0.16919,-0.819,-0.54829,293.21 |
| 15495 | | |
| 15496 | | > view matrix models |
| 15497 | | > #25,0.72986,0.45034,-0.5143,250.65,-0.54918,0.83428,-0.048833,502.39,0.40708,0.31808,0.85622,139.96,#24,0.0023112,-0.85836,-0.51305,625.45,0.99972,0.014128,-0.019133,332.95,0.023671,-0.51286,0.85815,229.96,#26,0.37665,-0.90908,0.17805,293.11,0.90486,0.40222,0.13949,493.98,-0.19842,0.10857,0.97409,313.6,#27,0.57363,-0.58008,-0.57832,328.04,-0.00043152,-0.70624,0.70797,503.12,-0.81911,-0.40586,-0.40537,331.67,#28,0.22585,0.97248,-0.057236,362.04,0.13434,0.0271,0.99056,459.06,0.96485,-0.23141,-0.12453,283.23,#29,0.28121,-0.087825,0.95562,344.68,-0.8559,-0.4733,0.20837,574.46,0.43399,-0.87651,-0.20827,324.57,#30,0.51765,0.822,-0.2374,351.21,-0.14427,-0.18964,-0.9712,519.35,-0.84334,0.53699,0.020421,348.19,#31,0.55726,0.10169,-0.82409,292.19,0.21974,0.93903,0.26447,232.53,0.80074,-0.32847,0.50093,579.09,#32,-0.12232,0.76018,-0.6381,250.91,0.50955,-0.50362,-0.69765,555.46,-0.8517,-0.41048,-0.32575,312.56,#33,-0.13357,-0.32454,0.93639,306.77,0.14292,-0.94129,-0.30585,562.62,0.98068,0.092976,0.17212,298.87,#34,0.44063,0.89098,-0.10952,327.53,0.64499,-0.22937,0.72896,530.57,0.62437,-0.39184,-0.67574,279.27,#35,-0.56558,-0.57777,0.58847,306.75,-0.81956,0.31434,-0.47907,561.71,0.091809,-0.75325,-0.6513,297.77 |
| 15498 | | |
| 15499 | | > ui mousemode right zoom |
| 15500 | | |
| 15501 | | > show #!9 models |
| 15502 | | |
| 15503 | | > hide #!9 models |
| 15504 | | |
| 15505 | | > show #!9 models |
| 15506 | | |
| 15507 | | > hide #!9 models |
| 15508 | | |
| 15509 | | > show #4 models |
| 15510 | | |
| 15511 | | > hide #4 models |
| 15512 | | |
| 15513 | | > show #3 models |
| 15514 | | |
| 15515 | | > ui mousemode right "translate selected models" |
| 15516 | | |
| 15517 | | > view matrix models |
| 15518 | | > #25,0.72986,0.45034,-0.5143,389.96,-0.54918,0.83428,-0.048833,659.89,0.40708,0.31808,0.85622,62.474,#24,0.0023112,-0.85836,-0.51305,764.76,0.99972,0.014128,-0.019133,490.45,0.023671,-0.51286,0.85815,152.47,#26,0.37665,-0.90908,0.17805,432.42,0.90486,0.40222,0.13949,651.48,-0.19842,0.10857,0.97409,236.12,#27,0.57363,-0.58008,-0.57832,467.35,-0.00043152,-0.70624,0.70797,660.62,-0.81911,-0.40586,-0.40537,254.18,#28,0.22585,0.97248,-0.057236,501.35,0.13434,0.0271,0.99056,616.56,0.96485,-0.23141,-0.12453,205.75,#29,0.28121,-0.087825,0.95562,483.99,-0.8559,-0.4733,0.20837,731.96,0.43399,-0.87651,-0.20827,247.08,#30,0.51765,0.822,-0.2374,490.53,-0.14427,-0.18964,-0.9712,676.85,-0.84334,0.53699,0.020421,270.7,#31,0.55726,0.10169,-0.82409,431.5,0.21974,0.93903,0.26447,390.03,0.80074,-0.32847,0.50093,501.6,#32,-0.12232,0.76018,-0.6381,390.22,0.50955,-0.50362,-0.69765,712.96,-0.8517,-0.41048,-0.32575,235.07,#33,-0.13357,-0.32454,0.93639,446.08,0.14292,-0.94129,-0.30585,720.12,0.98068,0.092976,0.17212,221.38,#34,0.44063,0.89098,-0.10952,466.84,0.64499,-0.22937,0.72896,688.07,0.62437,-0.39184,-0.67574,201.78,#35,-0.56558,-0.57777,0.58847,446.06,-0.81956,0.31434,-0.47907,719.21,0.091809,-0.75325,-0.6513,220.28 |
| 15519 | | |
| 15520 | | > view matrix models |
| 15521 | | > #25,0.72986,0.45034,-0.5143,267.48,-0.54918,0.83428,-0.048833,664.17,0.40708,0.31808,0.85622,111.09,#24,0.0023112,-0.85836,-0.51305,642.27,0.99972,0.014128,-0.019133,494.73,0.023671,-0.51286,0.85815,201.09,#26,0.37665,-0.90908,0.17805,309.93,0.90486,0.40222,0.13949,655.76,-0.19842,0.10857,0.97409,284.73,#27,0.57363,-0.58008,-0.57832,344.86,-0.00043152,-0.70624,0.70797,664.9,-0.81911,-0.40586,-0.40537,302.8,#28,0.22585,0.97248,-0.057236,378.86,0.13434,0.0271,0.99056,620.84,0.96485,-0.23141,-0.12453,254.37,#29,0.28121,-0.087825,0.95562,361.5,-0.8559,-0.4733,0.20837,736.24,0.43399,-0.87651,-0.20827,295.7,#30,0.51765,0.822,-0.2374,368.04,-0.14427,-0.18964,-0.9712,681.13,-0.84334,0.53699,0.020421,319.32,#31,0.55726,0.10169,-0.82409,309.01,0.21974,0.93903,0.26447,394.31,0.80074,-0.32847,0.50093,550.22,#32,-0.12232,0.76018,-0.6381,267.73,0.50955,-0.50362,-0.69765,717.24,-0.8517,-0.41048,-0.32575,283.69,#33,-0.13357,-0.32454,0.93639,323.59,0.14292,-0.94129,-0.30585,724.4,0.98068,0.092976,0.17212,270,#34,0.44063,0.89098,-0.10952,344.35,0.64499,-0.22937,0.72896,692.35,0.62437,-0.39184,-0.67574,250.4,#35,-0.56558,-0.57777,0.58847,323.57,-0.81956,0.31434,-0.47907,723.49,0.091809,-0.75325,-0.6513,268.9 |
| 15522 | | |
| 15523 | | > view matrix models |
| 15524 | | > #25,0.72986,0.45034,-0.5143,276.32,-0.54918,0.83428,-0.048833,565,0.40708,0.31808,0.85622,113.98,#24,0.0023112,-0.85836,-0.51305,651.12,0.99972,0.014128,-0.019133,395.56,0.023671,-0.51286,0.85815,203.98,#26,0.37665,-0.90908,0.17805,318.78,0.90486,0.40222,0.13949,556.59,-0.19842,0.10857,0.97409,287.62,#27,0.57363,-0.58008,-0.57832,353.71,-0.00043152,-0.70624,0.70797,565.73,-0.81911,-0.40586,-0.40537,305.69,#28,0.22585,0.97248,-0.057236,387.71,0.13434,0.0271,0.99056,521.67,0.96485,-0.23141,-0.12453,257.25,#29,0.28121,-0.087825,0.95562,370.35,-0.8559,-0.4733,0.20837,637.07,0.43399,-0.87651,-0.20827,298.59,#30,0.51765,0.822,-0.2374,376.89,-0.14427,-0.18964,-0.9712,581.96,-0.84334,0.53699,0.020421,322.21,#31,0.55726,0.10169,-0.82409,317.86,0.21974,0.93903,0.26447,295.14,0.80074,-0.32847,0.50093,553.1,#32,-0.12232,0.76018,-0.6381,276.58,0.50955,-0.50362,-0.69765,618.07,-0.8517,-0.41048,-0.32575,286.58,#33,-0.13357,-0.32454,0.93639,332.44,0.14292,-0.94129,-0.30585,625.23,0.98068,0.092976,0.17212,272.88,#34,0.44063,0.89098,-0.10952,353.2,0.64499,-0.22937,0.72896,593.18,0.62437,-0.39184,-0.67574,253.29,#35,-0.56558,-0.57777,0.58847,332.42,-0.81956,0.31434,-0.47907,624.32,0.091809,-0.75325,-0.6513,271.78 |
| 15525 | | |
| 15526 | | > view matrix models |
| 15527 | | > #25,0.72986,0.45034,-0.5143,282.76,-0.54918,0.83428,-0.048833,571.39,0.40708,0.31808,0.85622,109.8,#24,0.0023112,-0.85836,-0.51305,657.56,0.99972,0.014128,-0.019133,401.95,0.023671,-0.51286,0.85815,199.8,#26,0.37665,-0.90908,0.17805,325.22,0.90486,0.40222,0.13949,562.98,-0.19842,0.10857,0.97409,283.44,#27,0.57363,-0.58008,-0.57832,360.15,-0.00043152,-0.70624,0.70797,572.11,-0.81911,-0.40586,-0.40537,301.51,#28,0.22585,0.97248,-0.057236,394.15,0.13434,0.0271,0.99056,528.06,0.96485,-0.23141,-0.12453,253.07,#29,0.28121,-0.087825,0.95562,376.79,-0.8559,-0.4733,0.20837,643.45,0.43399,-0.87651,-0.20827,294.41,#30,0.51765,0.822,-0.2374,383.33,-0.14427,-0.18964,-0.9712,588.35,-0.84334,0.53699,0.020421,318.03,#31,0.55726,0.10169,-0.82409,324.3,0.21974,0.93903,0.26447,301.53,0.80074,-0.32847,0.50093,548.92,#32,-0.12232,0.76018,-0.6381,283.02,0.50955,-0.50362,-0.69765,624.46,-0.8517,-0.41048,-0.32575,282.4,#33,-0.13357,-0.32454,0.93639,338.88,0.14292,-0.94129,-0.30585,631.62,0.98068,0.092976,0.17212,268.71,#34,0.44063,0.89098,-0.10952,359.64,0.64499,-0.22937,0.72896,599.57,0.62437,-0.39184,-0.67574,249.11,#35,-0.56558,-0.57777,0.58847,338.86,-0.81956,0.31434,-0.47907,630.71,0.091809,-0.75325,-0.6513,267.6 |
| 15528 | | |
| 15529 | | > ui mousemode right "rotate selected models" |
| 15530 | | |
| 15531 | | > view matrix models |
| 15532 | | > #25,0.97821,0.20538,-0.030554,234.84,-0.12876,0.71545,0.68669,442.91,0.16289,-0.66779,0.7263,266.43,#24,-0.35202,-0.93516,-0.039506,644.08,0.65166,-0.27517,0.70684,357.33,-0.67188,0.22308,0.70627,216.66,#26,-0.10683,-0.84648,0.52159,348.76,0.37526,0.45147,0.80954,564.79,-0.92074,0.28221,0.26942,331.2,#27,0.11351,-0.39709,-0.91073,382.05,-0.69703,-0.68505,0.21181,580,-0.708,0.61076,-0.35454,314.17,#28,0.55873,0.68844,-0.46246,404.87,0.79326,-0.28092,0.54021,510.85,0.24198,-0.66868,-0.70307,302.28,#29,0.73289,-0.28311,0.61865,366.63,-0.24665,-0.95801,-0.14621,617.73,0.63407,-0.045429,-0.77194,252.89,#30,0.1093,0.97977,0.16763,402.41,-0.79973,0.18683,-0.57055,600,-0.59033,-0.071697,0.80397,298.08,#31,0.7283,-0.40221,-0.5548,559.38,0.68076,0.33204,0.65293,601.72,-0.078402,-0.85321,0.51563,636.34,#32,-0.65874,0.62896,-0.41288,291.21,-0.31157,-0.72756,-0.61121,608.24,-0.68482,-0.27399,0.67524,312.21,#33,0.26702,0.11683,0.95658,328.53,0.85569,-0.48534,-0.17959,595.35,0.44328,0.86649,-0.22956,269.79,#34,0.40032,0.64472,-0.65121,348.71,0.83038,-0.55578,-0.03978,557.48,-0.38758,-0.52482,-0.75786,270.79,#35,-0.12621,-0.919,0.37352,328.36,-0.37893,-0.30331,-0.87431,593.94,0.91678,-0.25188,-0.30995,269.9 |
| 15533 | | |
| 15534 | | > view matrix models |
| 15535 | | > #25,0.95358,-0.16872,-0.24942,303.05,0.26361,0.86809,0.42063,414.76,0.14555,-0.46686,0.87227,229.82,#24,-0.64749,-0.71353,-0.26763,704.9,0.5772,-0.68848,0.43912,524.53,-0.49759,0.12985,0.85764,168.64,#26,-0.33237,-0.92947,0.16006,361.3,0.49643,-0.028103,0.86762,554.76,-0.80193,0.36783,0.47075,324.85,#27,0.33044,-0.022493,-0.94356,383.67,-0.3988,-0.90942,-0.11798,586.12,-0.85543,0.41528,-0.30948,312.76,#28,0.19808,0.68202,-0.704,431.99,0.87543,0.19997,0.44004,537.96,0.44089,-0.70347,-0.55745,284.67,#29,0.8212,0.13698,0.55396,348.73,-0.052455,-0.94853,0.31231,626.82,0.56823,-0.28553,-0.77174,262.36,#30,0.37944,0.80373,0.45831,392.42,-0.51775,0.59498,-0.61476,615.98,-0.76678,-0.0040255,0.6419,302.5,#31,0.3705,-0.57613,-0.72856,563.26,0.92275,0.31791,0.21786,605.71,0.1061,-0.753,0.64941,633.81,#32,-0.52691,0.84767,-0.061819,289.5,-0.39341,-0.30772,-0.86633,572.86,-0.75339,-0.43216,0.49562,316.01,#33,-0.074558,0.38237,0.921,324.97,0.76008,-0.57607,0.3007,587.18,0.64554,0.72245,-0.24768,272.47,#34,-0.015474,0.76892,-0.63916,359.04,0.98648,-0.092569,-0.13524,562.32,-0.16316,-0.63261,-0.75709,264.52,#35,0.12247,-0.72847,0.67404,325.42,-0.59737,-0.59646,-0.53609,585.84,0.79256,-0.337,-0.50821,272.22 |
| 15536 | | |
| 15537 | | > hide #!25 models |
| 15538 | | |
| 15539 | | > view matrix models |
| 15540 | | > #25,0.30995,-0.0019258,-0.95075,448.39,0.90285,0.31401,0.2937,403.27,0.29798,-0.94942,0.099067,350.03,#24,-0.14001,-0.26182,-0.95491,675.41,-0.22961,-0.92953,0.28853,753.38,-0.96316,0.25966,0.070027,406.32,#26,0.29219,-0.77457,-0.56095,360.23,-0.12266,-0.61206,0.78124,557.75,-0.94846,-0.15946,-0.27385,330.37,#27,0.97376,-0.046372,-0.22279,371.59,-0.21628,-0.49313,-0.84264,591.15,-0.07079,0.86872,-0.49022,310.75,#28,-0.5198,0.85059,-0.079367,434.75,0.80692,0.45836,-0.37254,589.35,-0.2805,-0.25769,-0.92462,348.84,#29,0.0094095,0.60008,0.79988,379.42,0.70702,-0.56966,0.41905,579.15,0.70713,0.56159,-0.42963,238.56,#30,0.96849,0.24124,-0.061855,374.74,-0.23434,0.96683,0.10158,614.05,0.08431,-0.083888,0.9929,287.52,#31,-0.18079,0.18103,-0.96672,209.57,0.88293,-0.40316,-0.24062,812.9,-0.43331,-0.89704,-0.086953,556.3,#32,0.43511,0.88878,-0.14405,323.09,-0.81817,0.3235,-0.47534,514.34,-0.37587,0.32468,0.86793,282.44,#33,-0.78852,-0.17781,0.58874,371.52,0.58279,0.089739,0.80765,538.99,-0.19644,0.97997,0.032862,262.29,#34,-0.196,0.93499,0.2956,403.86,0.57487,0.35377,-0.73782,546.34,-0.79443,0.025316,-0.60683,289.54,#35,-0.36445,0.06647,0.92885,372.38,-0.097824,-0.99466,0.032797,538.41,0.92607,-0.07891,0.36901,263.28 |
| 15541 | | |
| 15542 | | > volume #24 level 0.003588 |
| 15543 | | |
| 15544 | | > ui mousemode right "translate selected models" |
| 15545 | | |
| 15546 | | > view matrix models |
| 15547 | | > #25,0.30995,-0.0019258,-0.95075,455.19,0.90285,0.31401,0.2937,440.16,0.29798,-0.94942,0.099067,336.3,#24,-0.14001,-0.26182,-0.95491,682.2,-0.22961,-0.92953,0.28853,790.27,-0.96316,0.25966,0.070027,392.59,#26,0.29219,-0.77457,-0.56095,367.02,-0.12266,-0.61206,0.78124,594.64,-0.94846,-0.15946,-0.27385,316.65,#27,0.97376,-0.046372,-0.22279,378.39,-0.21628,-0.49313,-0.84264,628.04,-0.07079,0.86872,-0.49022,297.03,#28,-0.5198,0.85059,-0.079367,441.55,0.80692,0.45836,-0.37254,626.23,-0.2805,-0.25769,-0.92462,335.11,#29,0.0094095,0.60008,0.79988,386.22,0.70702,-0.56966,0.41905,616.03,0.70713,0.56159,-0.42963,224.84,#30,0.96849,0.24124,-0.061855,381.54,-0.23434,0.96683,0.10158,650.94,0.08431,-0.083888,0.9929,273.8,#31,-0.18079,0.18103,-0.96672,216.37,0.88293,-0.40316,-0.24062,849.79,-0.43331,-0.89704,-0.086953,542.57,#32,0.43511,0.88878,-0.14405,329.89,-0.81817,0.3235,-0.47534,551.23,-0.37587,0.32468,0.86793,268.71,#33,-0.78852,-0.17781,0.58874,378.32,0.58279,0.089739,0.80765,575.88,-0.19644,0.97997,0.032862,248.57,#34,-0.196,0.93499,0.2956,410.66,0.57487,0.35377,-0.73782,583.23,-0.79443,0.025316,-0.60683,275.81,#35,-0.36445,0.06647,0.92885,379.18,-0.097824,-0.99466,0.032797,575.3,0.92607,-0.07891,0.36901,249.55 |
| 15548 | | |
| 15549 | | > ui mousemode right "rotate selected models" |
| 15550 | | |
| 15551 | | > view matrix models |
| 15552 | | > #25,0.57,0.14349,-0.80902,402.3,0.040342,0.97856,0.20198,454.72,0.82065,-0.14777,0.55199,105.5,#24,-0.16153,-0.55902,-0.81327,727.09,0.79684,-0.56004,0.2267,504.14,-0.58219,-0.61143,0.53591,368.84,#26,0.28091,-0.92212,-0.26607,369.6,0.74836,0.036886,0.66227,550.6,-0.60087,-0.38515,0.70043,253.02,#27,0.8544,-0.24309,-0.45924,392.01,-0.20031,-0.9696,0.14056,579.6,-0.47945,-0.028101,-0.87712,269.94,#28,-0.21858,0.96391,-0.15201,449.38,0.67112,0.26158,0.69367,533.25,0.70839,0.049601,-0.70408,268.07,#29,0.2037,0.35782,0.9113,398.91,-0.35108,-0.84221,0.40917,638.1,0.91392,-0.40329,-0.045937,225.81,#30,0.83638,0.5434,-0.071971,403.44,-0.34577,0.42114,-0.8385,609.1,-0.42533,0.72619,0.54012,278.5,#31,0.13358,0.083074,-0.98755,298.8,0.77732,0.60935,0.1564,478.1,0.61476,-0.78854,0.01682,611.59,#32,0.16541,0.92949,-0.32969,322.73,-0.071503,-0.32211,-0.944,582.84,-0.98363,0.17972,0.01318,204.8,#33,-0.54877,-0.18482,0.81529,377.4,0.55413,-0.81064,0.18922,602.07,0.62593,0.55562,0.54727,203.98,#34,0.036777,0.99686,0.070116,409.08,0.97986,-0.049751,0.19337,574.72,0.19625,0.061593,-0.97862,213.51,#35,-0.41921,-0.25383,0.87169,377.98,-0.80402,-0.34214,-0.4863,600.79,0.42168,-0.90472,-0.060654,203.68 |
| 15553 | | |
| 15554 | | > view matrix models |
| 15555 | | > #25,0.37461,0.60806,-0.69995,351.15,-0.1851,0.78877,0.58616,466.5,0.90852,-0.090026,0.40803,102.5,#24,0.33175,-0.64403,-0.68933,611.49,0.74672,-0.26728,0.60908,373.1,-0.5765,-0.71679,0.39224,419.96,#26,0.69578,-0.71722,-0.038468,342.85,0.49647,0.44155,0.74736,574.53,-0.51904,-0.5391,0.6633,244.92,#27,0.72783,-0.66054,-0.18425,373.02,-0.60187,-0.74408,0.29001,590.6,-0.32866,-0.10018,-0.93912,266.39,#28,0.0055179,0.95,0.3122,401.36,0.73346,-0.21606,0.64448,522.81,0.67971,0.22543,-0.69798,273.14,#29,-0.14221,-0.01648,0.9897,413.87,-0.35461,-0.93265,-0.066482,636.59,0.92414,-0.36041,0.12679,225.98,#30,0.63489,0.546,-0.54663,395.32,-0.71888,0.15827,-0.67688,611.77,-0.28306,0.8227,0.49299,277.72,#31,0.37644,0.49076,-0.78578,186.96,0.65776,0.45572,0.59973,563.31,0.65242,-0.74261,-0.15125,583.17,#32,0.27592,0.62458,-0.73059,325.47,-0.19449,-0.70809,-0.6788,622.19,-0.9413,0.32939,-0.073904,190.27,#33,-0.3217,-0.63403,0.70322,382.02,0.77969,-0.59877,-0.18317,613.61,0.53721,0.48937,0.68697,199.62,#34,0.45809,0.83061,0.31661,395.06,0.85866,-0.5056,0.084068,575.22,0.22991,0.23335,-0.94482,213.69,#35,-0.81154,-0.22776,0.53807,381.97,-0.49096,-0.23347,-0.83931,612.2,0.31679,-0.94531,0.077644,199.39 |
| 15556 | | |
| 15557 | | > view matrix models |
| 15558 | | > #25,0.25016,0.77249,-0.58367,331.76,-0.24968,0.63392,0.73198,480.46,0.93546,-0.037381,0.35146,97.865,#24,0.53376,-0.62737,-0.56702,538.64,0.64664,-0.1293,0.75176,336.68,-0.54495,-0.76791,0.33667,435.22,#26,0.8277,-0.55623,0.074347,336.1,0.32318,0.58077,0.74717,589.76,-0.45878,-0.5944,0.66046,239.5,#27,0.60092,-0.79833,-0.039501,367.25,-0.75228,-0.58158,0.3096,599.1,-0.27013,-0.15633,-0.95005,263.42,#28,0.11271,0.85752,0.50195,379.27,0.72416,-0.41679,0.54944,526.84,0.68036,0.30156,-0.66796,272.23,#29,-0.29088,-0.19304,0.93708,420.37,-0.30086,-0.91129,-0.28112,634.35,0.90823,-0.3637,0.20699,226.63,#30,0.48107,0.49949,-0.72047,392.69,-0.84524,0.046152,-0.53239,615.01,-0.23267,0.86509,0.44439,276.6,#31,0.45871,0.6374,-0.61912,154.9,0.56817,0.32532,0.75588,618.17,0.68321,-0.69849,-0.21292,563.84,#32,0.30094,0.42418,-0.85411,334.13,-0.2644,-0.82341,-0.50209,639.27,-0.91626,0.37693,-0.13564,183.78,#33,-0.18366,-0.78788,0.58781,386.45,0.83927,-0.437,-0.32351,618.57,0.51176,0.43391,0.7415,197.68,#34,0.61643,0.67688,0.4023,389.51,0.73987,-0.67275,-0.0017449,578.46,0.26947,0.29872,-0.91551,212.64,#35,-0.92273,-0.19692,0.33136,386.11,-0.29528,-0.19145,-0.93603,617.2,0.24776,-0.96155,0.11851,197.44 |
| 15559 | | |
| 15560 | | > view matrix models |
| 15561 | | > #25,0.54074,0.83707,0.083165,226.88,-0.79606,0.47727,0.37215,599.46,0.27182,-0.26744,0.92444,148.09,#24,0.4121,-0.90597,0.096951,482.91,0.81913,0.41498,0.396,265.24,-0.399,-0.083775,0.91312,143.4,#26,0.52341,-0.44224,0.72833,351.31,0.50042,0.85137,0.15733,594.34,-0.68965,0.28212,0.66692,276.61,#27,-0.038806,-0.92971,-0.36625,390.47,-0.44005,-0.31317,0.8416,584.98,-0.89714,0.19382,-0.39696,273.68,#28,0.75598,0.59053,0.28243,370.74,0.12512,-0.55386,0.82315,522.93,0.64252,-0.58695,-0.4926,238.98,#29,0.10688,-0.7408,0.66317,426.98,-0.79267,-0.46613,-0.39294,632.96,0.60021,-0.48368,-0.63703,231.47,#30,-0.15027,0.82319,-0.54753,423.02,-0.52993,-0.5346,-0.65831,587.74,-0.83462,0.19123,0.51656,271.18,#31,0.93995,0.26407,-0.21625,394.79,-0.013864,0.66258,0.74886,420.07,0.34103,-0.70089,0.62646,603.07,#32,-0.36159,0.12508,-0.92391,344.39,0.35991,-0.89542,-0.26208,667.95,-0.86007,-0.42729,0.27876,266.86,#33,0.50624,-0.5587,0.65694,380.32,0.33482,-0.57468,-0.74675,640.66,0.79474,0.598,-0.10386,230.48,#34,0.92556,0.33978,-0.16697,371.79,0.37284,-0.7415,0.55783,600.03,0.065726,-0.57856,-0.81299,219.6,#35,-0.68667,-0.71621,-0.12459,379.32,-0.341,0.46869,-0.81489,639.77,0.64203,-0.51708,-0.56607,229.97 |
| 15562 | | |
| 15563 | | > ui mousemode right "rotate selected models" |
| 15564 | | |
| 15565 | | > view matrix models |
| 15566 | | > #25,0.56775,0.81372,0.12456,224.78,-0.70969,0.40715,0.57495,580.66,0.41713,-0.41483,0.80865,162.63,#24,0.37667,-0.91611,0.13733,485.95,0.70757,0.38021,0.59563,255.54,-0.59788,-0.12718,0.79143,220.71,#26,0.47824,-0.44163,0.75911,355.77,0.33116,0.89124,0.30987,605.8,-0.8134,0.1032,0.57248,281.94,#27,-0.077684,-0.91287,-0.40079,394.88,-0.63455,-0.2648,0.72611,596.21,-0.76897,0.31073,-0.55869,279.1,#28,0.78602,0.56876,0.24227,374.45,0.27305,-0.67099,0.68935,527.75,0.55464,-0.47569,-0.68271,260.66,#29,0.15151,-0.75674,0.63592,428.33,-0.63307,-0.56837,-0.52553,633.39,0.75913,-0.32295,-0.56518,225.1,#30,-0.18419,0.84109,-0.50857,427.21,-0.70821,-0.47236,-0.52471,598.48,-0.68156,0.26353,0.68267,274.27,#31,0.95647,0.21591,-0.19635,419.12,0.069427,0.48514,0.87168,511.39,0.28346,-0.84736,0.44903,636.78,#32,-0.41186,0.11817,-0.90355,347.09,0.15095,-0.96901,-0.19553,675.17,-0.89866,-0.21692,0.38126,255.97,#33,0.54093,-0.51695,0.66345,381.55,0.51089,-0.42466,-0.74743,640.43,0.66812,0.74326,0.034395,224.91,#34,0.92116,0.32205,-0.2185,373.17,0.38248,-0.85291,0.35534,598.34,-0.071924,-0.41089,-0.90884,224.11,#35,-0.64647,-0.75004,-0.13971,380.54,-0.18774,0.33388,-0.92373,639.43,0.73948,-0.57093,-0.35666,224.68 |
| 15567 | | |
| 15568 | | > ui mousemode right "translate selected models" |
| 15569 | | |
| 15570 | | > view matrix models |
| 15571 | | > #25,0.56775,0.81372,0.12456,158.31,-0.70969,0.40715,0.57495,456.38,0.41713,-0.41483,0.80865,180.62,#24,0.37667,-0.91611,0.13733,419.48,0.70757,0.38021,0.59563,131.26,-0.59788,-0.12718,0.79143,238.7,#26,0.47824,-0.44163,0.75911,289.3,0.33116,0.89124,0.30987,481.52,-0.8134,0.1032,0.57248,299.92,#27,-0.077684,-0.91287,-0.40079,328.41,-0.63455,-0.2648,0.72611,471.93,-0.76897,0.31073,-0.55869,297.09,#28,0.78602,0.56876,0.24227,307.98,0.27305,-0.67099,0.68935,403.47,0.55464,-0.47569,-0.68271,278.65,#29,0.15151,-0.75674,0.63592,361.86,-0.63307,-0.56837,-0.52553,509.11,0.75913,-0.32295,-0.56518,243.09,#30,-0.18419,0.84109,-0.50857,360.74,-0.70821,-0.47236,-0.52471,474.2,-0.68156,0.26353,0.68267,292.26,#31,0.95647,0.21591,-0.19635,352.65,0.069427,0.48514,0.87168,387.11,0.28346,-0.84736,0.44903,654.76,#32,-0.41186,0.11817,-0.90355,280.62,0.15095,-0.96901,-0.19553,550.89,-0.89866,-0.21692,0.38126,273.96,#33,0.54093,-0.51695,0.66345,315.08,0.51089,-0.42466,-0.74743,516.14,0.66812,0.74326,0.034395,242.9,#34,0.92116,0.32205,-0.2185,306.7,0.38248,-0.85291,0.35534,474.06,-0.071924,-0.41089,-0.90884,242.1,#35,-0.64647,-0.75004,-0.13971,314.08,-0.18774,0.33388,-0.92373,515.15,0.73948,-0.57093,-0.35666,242.66 |
| 15572 | | |
| 15573 | | > view matrix models |
| 15574 | | > #25,0.56775,0.81372,0.12456,157.25,-0.70969,0.40715,0.57495,457.09,0.41713,-0.41483,0.80865,180.37,#24,0.37667,-0.91611,0.13733,418.42,0.70757,0.38021,0.59563,131.97,-0.59788,-0.12718,0.79143,238.45,#26,0.47824,-0.44163,0.75911,288.25,0.33116,0.89124,0.30987,482.23,-0.8134,0.1032,0.57248,299.68,#27,-0.077684,-0.91287,-0.40079,327.36,-0.63455,-0.2648,0.72611,472.64,-0.76897,0.31073,-0.55869,296.84,#28,0.78602,0.56876,0.24227,306.93,0.27305,-0.67099,0.68935,404.18,0.55464,-0.47569,-0.68271,278.41,#29,0.15151,-0.75674,0.63592,360.8,-0.63307,-0.56837,-0.52553,509.82,0.75913,-0.32295,-0.56518,242.84,#30,-0.18419,0.84109,-0.50857,359.69,-0.70821,-0.47236,-0.52471,474.91,-0.68156,0.26353,0.68267,292.01,#31,0.95647,0.21591,-0.19635,351.59,0.069427,0.48514,0.87168,387.82,0.28346,-0.84736,0.44903,654.52,#32,-0.41186,0.11817,-0.90355,279.57,0.15095,-0.96901,-0.19553,551.6,-0.89866,-0.21692,0.38126,273.71,#33,0.54093,-0.51695,0.66345,314.02,0.51089,-0.42466,-0.74743,516.85,0.66812,0.74326,0.034395,242.65,#34,0.92116,0.32205,-0.2185,305.64,0.38248,-0.85291,0.35534,474.77,-0.071924,-0.41089,-0.90884,241.85,#35,-0.64647,-0.75004,-0.13971,313.02,-0.18774,0.33388,-0.92373,515.86,0.73948,-0.57093,-0.35666,242.42 |
| 15575 | | |
| 15576 | | > view matrix models |
| 15577 | | > #25,0.56775,0.81372,0.12456,121.78,-0.70969,0.40715,0.57495,438.32,0.41713,-0.41483,0.80865,193.07,#24,0.37667,-0.91611,0.13733,382.95,0.70757,0.38021,0.59563,113.21,-0.59788,-0.12718,0.79143,251.15,#26,0.47824,-0.44163,0.75911,252.77,0.33116,0.89124,0.30987,463.47,-0.8134,0.1032,0.57248,312.37,#27,-0.077684,-0.91287,-0.40079,291.88,-0.63455,-0.2648,0.72611,453.87,-0.76897,0.31073,-0.55869,309.53,#28,0.78602,0.56876,0.24227,271.46,0.27305,-0.67099,0.68935,385.42,0.55464,-0.47569,-0.68271,291.1,#29,0.15151,-0.75674,0.63592,325.33,-0.63307,-0.56837,-0.52553,491.05,0.75913,-0.32295,-0.56518,255.53,#30,-0.18419,0.84109,-0.50857,324.21,-0.70821,-0.47236,-0.52471,456.15,-0.68156,0.26353,0.68267,304.71,#31,0.95647,0.21591,-0.19635,316.12,0.069427,0.48514,0.87168,369.06,0.28346,-0.84736,0.44903,667.21,#32,-0.41186,0.11817,-0.90355,244.1,0.15095,-0.96901,-0.19553,532.83,-0.89866,-0.21692,0.38126,286.41,#33,0.54093,-0.51695,0.66345,278.55,0.51089,-0.42466,-0.74743,498.09,0.66812,0.74326,0.034395,255.35,#34,0.92116,0.32205,-0.2185,270.17,0.38248,-0.85291,0.35534,456.01,-0.071924,-0.41089,-0.90884,254.55,#35,-0.64647,-0.75004,-0.13971,277.55,-0.18774,0.33388,-0.92373,497.1,0.73948,-0.57093,-0.35666,255.11 |
| 15578 | | |
| 15579 | | > view matrix models |
| 15580 | | > #25,0.56775,0.81372,0.12456,100.72,-0.70969,0.40715,0.57495,427.82,0.41713,-0.41483,0.80865,200.35,#24,0.37667,-0.91611,0.13733,361.89,0.70757,0.38021,0.59563,102.71,-0.59788,-0.12718,0.79143,258.43,#26,0.47824,-0.44163,0.75911,231.72,0.33116,0.89124,0.30987,452.97,-0.8134,0.1032,0.57248,319.66,#27,-0.077684,-0.91287,-0.40079,270.83,-0.63455,-0.2648,0.72611,443.37,-0.76897,0.31073,-0.55869,316.82,#28,0.78602,0.56876,0.24227,250.4,0.27305,-0.67099,0.68935,374.92,0.55464,-0.47569,-0.68271,298.39,#29,0.15151,-0.75674,0.63592,304.27,-0.63307,-0.56837,-0.52553,480.55,0.75913,-0.32295,-0.56518,262.82,#30,-0.18419,0.84109,-0.50857,303.16,-0.70821,-0.47236,-0.52471,445.65,-0.68156,0.26353,0.68267,311.99,#31,0.95647,0.21591,-0.19635,295.06,0.069427,0.48514,0.87168,358.56,0.28346,-0.84736,0.44903,674.5,#32,-0.41186,0.11817,-0.90355,223.04,0.15095,-0.96901,-0.19553,522.34,-0.89866,-0.21692,0.38126,293.7,#33,0.54093,-0.51695,0.66345,257.49,0.51089,-0.42466,-0.74743,487.59,0.66812,0.74326,0.034395,262.64,#34,0.92116,0.32205,-0.2185,249.11,0.38248,-0.85291,0.35534,445.51,-0.071924,-0.41089,-0.90884,261.83,#35,-0.64647,-0.75004,-0.13971,256.49,-0.18774,0.33388,-0.92373,486.6,0.73948,-0.57093,-0.35666,262.4 |
| 15581 | | |
| 15582 | | > select subtract #26 |
| 15583 | | |
| 15584 | | 31014 atoms, 31550 bonds, 1 pseudobond, 3912 residues, 14 models selected |
| 15585 | | |
| 15586 | | > select add #26 |
| 15587 | | |
| 15588 | | 40824 atoms, 41582 bonds, 1 pseudobond, 5145 residues, 15 models selected |
| 15589 | | |
| 15590 | | > hide #26 models |
| 15591 | | |
| 15592 | | > hide #27 models |
| 15593 | | |
| 15594 | | > hide #28 models |
| 15595 | | |
| 15596 | | > hide #29 models |
| 15597 | | |
| 15598 | | > hide #30 models |
| 15599 | | |
| 15600 | | > hide #31 models |
| 15601 | | |
| 15602 | | > hide #!32 models |
| 15603 | | |
| 15604 | | > hide #33 models |
| 15605 | | |
| 15606 | | > hide #34 models |
| 15607 | | |
| 15608 | | > hide #35 models |
| 15609 | | |
| 15610 | | > color #24 #ff2600ff models |
| 15611 | | |
| 15612 | | > view matrix models |
| 15613 | | > #25,0.56775,0.81372,0.12456,120.98,-0.70969,0.40715,0.57495,425.68,0.41713,-0.41483,0.80865,198.46,#24,0.37667,-0.91611,0.13733,382.14,0.70757,0.38021,0.59563,100.56,-0.59788,-0.12718,0.79143,256.54,#26,0.47824,-0.44163,0.75911,251.97,0.33116,0.89124,0.30987,450.82,-0.8134,0.1032,0.57248,317.77,#27,-0.077684,-0.91287,-0.40079,291.08,-0.63455,-0.2648,0.72611,441.23,-0.76897,0.31073,-0.55869,314.93,#28,0.78602,0.56876,0.24227,270.65,0.27305,-0.67099,0.68935,372.77,0.55464,-0.47569,-0.68271,296.5,#29,0.15151,-0.75674,0.63592,324.52,-0.63307,-0.56837,-0.52553,478.4,0.75913,-0.32295,-0.56518,260.93,#30,-0.18419,0.84109,-0.50857,323.41,-0.70821,-0.47236,-0.52471,443.5,-0.68156,0.26353,0.68267,310.1,#31,0.95647,0.21591,-0.19635,315.32,0.069427,0.48514,0.87168,356.41,0.28346,-0.84736,0.44903,672.61,#32,-0.41186,0.11817,-0.90355,243.29,0.15095,-0.96901,-0.19553,520.19,-0.89866,-0.21692,0.38126,291.81,#33,0.54093,-0.51695,0.66345,277.75,0.51089,-0.42466,-0.74743,485.44,0.66812,0.74326,0.034395,260.75,#34,0.92116,0.32205,-0.2185,269.36,0.38248,-0.85291,0.35534,443.36,-0.071924,-0.41089,-0.90884,259.94,#35,-0.64647,-0.75004,-0.13971,276.74,-0.18774,0.33388,-0.92373,484.45,0.73948,-0.57093,-0.35666,260.51 |
| 15614 | | |
| 15615 | | > view matrix models |
| 15616 | | > #25,0.56775,0.81372,0.12456,133.04,-0.70969,0.40715,0.57495,478.96,0.41713,-0.41483,0.80865,180.59,#24,0.37667,-0.91611,0.13733,394.21,0.70757,0.38021,0.59563,153.84,-0.59788,-0.12718,0.79143,238.67,#26,0.47824,-0.44163,0.75911,264.03,0.33116,0.89124,0.30987,504.1,-0.8134,0.1032,0.57248,299.89,#27,-0.077684,-0.91287,-0.40079,303.14,-0.63455,-0.2648,0.72611,494.51,-0.76897,0.31073,-0.55869,297.05,#28,0.78602,0.56876,0.24227,282.71,0.27305,-0.67099,0.68935,426.05,0.55464,-0.47569,-0.68271,278.62,#29,0.15151,-0.75674,0.63592,336.59,-0.63307,-0.56837,-0.52553,531.69,0.75913,-0.32295,-0.56518,243.05,#30,-0.18419,0.84109,-0.50857,335.47,-0.70821,-0.47236,-0.52471,496.78,-0.68156,0.26353,0.68267,292.23,#31,0.95647,0.21591,-0.19635,327.38,0.069427,0.48514,0.87168,409.69,0.28346,-0.84736,0.44903,654.73,#32,-0.41186,0.11817,-0.90355,255.36,0.15095,-0.96901,-0.19553,573.47,-0.89866,-0.21692,0.38126,273.93,#33,0.54093,-0.51695,0.66345,289.81,0.51089,-0.42466,-0.74743,538.72,0.66812,0.74326,0.034395,242.87,#34,0.92116,0.32205,-0.2185,281.43,0.38248,-0.85291,0.35534,496.64,-0.071924,-0.41089,-0.90884,242.07,#35,-0.64647,-0.75004,-0.13971,288.81,-0.18774,0.33388,-0.92373,537.73,0.73948,-0.57093,-0.35666,242.63 |
| 15617 | | |
| 15618 | | > ui mousemode right "rotate selected models" |
| 15619 | | |
| 15620 | | > view matrix models |
| 15621 | | > #25,0.31393,0.69197,-0.6501,252.34,-0.12626,0.70906,0.69375,361.81,0.94101,-0.13571,0.30997,132.62,#24,0.43359,-0.63792,-0.63644,487.56,0.64472,-0.27382,0.71369,276.12,-0.62955,-0.71977,0.29255,471.16,#26,0.76611,-0.64257,0.013391,249.58,0.36612,0.45344,0.81262,484.42,-0.52824,-0.61765,0.58264,262.95,#27,0.67276,-0.73128,-0.11235,280.36,-0.70383,-0.67939,0.20749,499.49,-0.22806,-0.060516,-0.97176,284.28,#28,0.054909,0.91114,0.40842,301,0.79611,-0.28683,0.53286,430.26,0.60266,0.29588,-0.74112,299.24,#29,-0.21821,-0.10056,0.97071,327.56,-0.23975,-0.95867,-0.1532,536.61,0.94599,-0.26616,0.18508,241.71,#30,0.56603,0.52443,-0.63607,304.29,-0.80537,0.18702,-0.56249,519.36,-0.17603,0.83066,0.52823,294.61,#31,0.41646,0.56756,-0.71024,79.208,0.68063,0.32329,0.65744,524.53,0.60275,-0.75721,-0.25166,591.89,#32,0.29322,0.53101,-0.79502,239.72,-0.31888,-0.72963,-0.60494,527.63,-0.9013,0.4309,-0.044618,202.98,#33,-0.25918,-0.71441,0.64996,294.58,0.86023,-0.47671,-0.18095,514.36,0.43911,0.51222,0.73811,216.12,#34,0.53689,0.76133,0.36349,302.85,0.82691,-0.56031,-0.047804,476.53,0.16727,0.32624,-0.93037,234.61,#35,-0.87195,-0.21112,0.44174,294.39,-0.37004,-0.30661,-0.87696,512.95,0.32059,-0.92812,0.18923,216.03 |
| 15622 | | |
| 15623 | | > view matrix models |
| 15624 | | > #25,0.23101,0.91523,-0.33013,200.8,-0.83636,0.36017,0.41325,514.99,0.49713,0.18064,0.84867,87.81,#24,0.65679,-0.68759,-0.30961,380.72,0.7409,0.512,0.43464,153.53,-0.14033,-0.51486,0.84571,207.22,#26,0.85306,-0.40862,0.32453,244.97,0.39498,0.91206,0.11014,502.93,-0.341,0.034228,0.93944,260.81,#27,0.3463,-0.93803,-0.01344,279,-0.48415,-0.19097,0.85389,488.92,-0.80354,-0.2892,-0.52028,277.4,#28,0.35611,0.72387,0.59093,270.8,0.073566,-0.65214,0.75452,427.67,0.93154,-0.22522,-0.28549,237.1,#29,-0.30319,-0.46473,0.83193,337.34,-0.76333,-0.40416,-0.50397,529.77,0.57044,-0.78783,-0.2322,258.84,#30,0.20791,0.54819,-0.8101,308.69,-0.55664,-0.6147,-0.55883,487.72,-0.80432,0.56712,0.17735,291.22,#31,0.64378,0.65567,-0.39453,100.82,-0.10325,0.5853,0.80422,344.13,0.75822,-0.477,0.44449,565.5,#32,0.15354,0.19971,-0.96775,253.32,0.34873,-0.9273,-0.13604,576.15,-0.92456,-0.3166,-0.21202,249.39,#33,0.093561,-0.84854,0.52079,298.52,0.31943,-0.46985,-0.82293,542.78,0.94298,0.24335,0.22709,235.14,#34,0.81577,0.47884,0.32441,291.17,0.26577,-0.8085,0.52506,502.85,0.5137,-0.34211,-0.78681,221.21,#35,-0.95011,-0.30565,0.062186,297.8,-0.2207,0.51789,-0.82649,541.98,0.22041,-0.79898,-0.55951,234.2 |
| 15625 | | |
| 15626 | | > ui mousemode right "translate selected models" |
| 15627 | | |
| 15628 | | > view matrix models |
| 15629 | | > #25,0.23101,0.91523,-0.33013,208.08,-0.83636,0.36017,0.41325,475.99,0.49713,0.18064,0.84867,105.89,#24,0.65679,-0.68759,-0.30961,388,0.7409,0.512,0.43464,114.53,-0.14033,-0.51486,0.84571,225.31,#26,0.85306,-0.40862,0.32453,252.25,0.39498,0.91206,0.11014,463.93,-0.341,0.034228,0.93944,278.89,#27,0.3463,-0.93803,-0.01344,286.28,-0.48415,-0.19097,0.85389,449.92,-0.80354,-0.2892,-0.52028,295.49,#28,0.35611,0.72387,0.59093,278.08,0.073566,-0.65214,0.75452,388.67,0.93154,-0.22522,-0.28549,255.18,#29,-0.30319,-0.46473,0.83193,344.62,-0.76333,-0.40416,-0.50397,490.78,0.57044,-0.78783,-0.2322,276.93,#30,0.20791,0.54819,-0.8101,315.97,-0.55664,-0.6147,-0.55883,448.72,-0.80432,0.56712,0.17735,309.3,#31,0.64378,0.65567,-0.39453,108.1,-0.10325,0.5853,0.80422,305.13,0.75822,-0.477,0.44449,583.59,#32,0.15354,0.19971,-0.96775,260.6,0.34873,-0.9273,-0.13604,537.15,-0.92456,-0.3166,-0.21202,267.47,#33,0.093561,-0.84854,0.52079,305.8,0.31943,-0.46985,-0.82293,503.78,0.94298,0.24335,0.22709,253.22,#34,0.81577,0.47884,0.32441,298.45,0.26577,-0.8085,0.52506,463.86,0.5137,-0.34211,-0.78681,239.29,#35,-0.95011,-0.30565,0.062186,305.08,-0.2207,0.51789,-0.82649,502.98,0.22041,-0.79898,-0.55951,252.28 |
| 15630 | | |
| 15631 | | > view matrix models |
| 15632 | | > #25,0.23101,0.91523,-0.33013,212.69,-0.83636,0.36017,0.41325,496.36,0.49713,0.18064,0.84867,105.06,#24,0.65679,-0.68759,-0.30961,392.61,0.7409,0.512,0.43464,134.91,-0.14033,-0.51486,0.84571,224.47,#26,0.85306,-0.40862,0.32453,256.86,0.39498,0.91206,0.11014,484.3,-0.341,0.034228,0.93944,278.05,#27,0.3463,-0.93803,-0.01344,290.89,-0.48415,-0.19097,0.85389,470.29,-0.80354,-0.2892,-0.52028,294.65,#28,0.35611,0.72387,0.59093,282.69,0.073566,-0.65214,0.75452,409.04,0.93154,-0.22522,-0.28549,254.35,#29,-0.30319,-0.46473,0.83193,349.23,-0.76333,-0.40416,-0.50397,511.15,0.57044,-0.78783,-0.2322,276.09,#30,0.20791,0.54819,-0.8101,320.58,-0.55664,-0.6147,-0.55883,469.1,-0.80432,0.56712,0.17735,308.47,#31,0.64378,0.65567,-0.39453,112.71,-0.10325,0.5853,0.80422,325.5,0.75822,-0.477,0.44449,582.75,#32,0.15354,0.19971,-0.96775,265.22,0.34873,-0.9273,-0.13604,557.52,-0.92456,-0.3166,-0.21202,266.63,#33,0.093561,-0.84854,0.52079,310.41,0.31943,-0.46985,-0.82293,524.15,0.94298,0.24335,0.22709,252.38,#34,0.81577,0.47884,0.32441,303.06,0.26577,-0.8085,0.52506,484.23,0.5137,-0.34211,-0.78681,238.46,#35,-0.95011,-0.30565,0.062186,309.69,-0.2207,0.51789,-0.82649,523.36,0.22041,-0.79898,-0.55951,251.45 |
| 15633 | | |
| 15634 | | > view matrix models |
| 15635 | | > #25,0.23101,0.91523,-0.33013,233.2,-0.83636,0.36017,0.41325,485.63,0.49713,0.18064,0.84867,114.46,#24,0.65679,-0.68759,-0.30961,413.12,0.7409,0.512,0.43464,124.18,-0.14033,-0.51486,0.84571,233.87,#26,0.85306,-0.40862,0.32453,277.37,0.39498,0.91206,0.11014,473.58,-0.341,0.034228,0.93944,287.45,#27,0.3463,-0.93803,-0.01344,311.4,-0.48415,-0.19097,0.85389,459.56,-0.80354,-0.2892,-0.52028,304.05,#28,0.35611,0.72387,0.59093,303.2,0.073566,-0.65214,0.75452,398.32,0.93154,-0.22522,-0.28549,263.75,#29,-0.30319,-0.46473,0.83193,369.73,-0.76333,-0.40416,-0.50397,500.42,0.57044,-0.78783,-0.2322,285.49,#30,0.20791,0.54819,-0.8101,341.09,-0.55664,-0.6147,-0.55883,458.37,-0.80432,0.56712,0.17735,317.87,#31,0.64378,0.65567,-0.39453,133.22,-0.10325,0.5853,0.80422,314.78,0.75822,-0.477,0.44449,592.15,#32,0.15354,0.19971,-0.96775,285.72,0.34873,-0.9273,-0.13604,546.79,-0.92456,-0.3166,-0.21202,276.03,#33,0.093561,-0.84854,0.52079,330.92,0.31943,-0.46985,-0.82293,513.43,0.94298,0.24335,0.22709,261.78,#34,0.81577,0.47884,0.32441,323.57,0.26577,-0.8085,0.52506,473.5,0.5137,-0.34211,-0.78681,247.86,#35,-0.95011,-0.30565,0.062186,330.19,-0.2207,0.51789,-0.82649,512.63,0.22041,-0.79898,-0.55951,260.85 |
| 15636 | | |
| 15637 | | > view matrix models |
| 15638 | | > #25,0.23101,0.91523,-0.33013,226.85,-0.83636,0.36017,0.41325,478.83,0.49713,0.18064,0.84867,120.73,#24,0.65679,-0.68759,-0.30961,406.77,0.7409,0.512,0.43464,117.38,-0.14033,-0.51486,0.84571,240.14,#26,0.85306,-0.40862,0.32453,271.02,0.39498,0.91206,0.11014,466.77,-0.341,0.034228,0.93944,293.72,#27,0.3463,-0.93803,-0.01344,305.05,-0.48415,-0.19097,0.85389,452.76,-0.80354,-0.2892,-0.52028,310.32,#28,0.35611,0.72387,0.59093,296.85,0.073566,-0.65214,0.75452,391.51,0.93154,-0.22522,-0.28549,270.02,#29,-0.30319,-0.46473,0.83193,363.39,-0.76333,-0.40416,-0.50397,493.62,0.57044,-0.78783,-0.2322,291.76,#30,0.20791,0.54819,-0.8101,334.74,-0.55664,-0.6147,-0.55883,451.57,-0.80432,0.56712,0.17735,324.14,#31,0.64378,0.65567,-0.39453,126.87,-0.10325,0.5853,0.80422,307.97,0.75822,-0.477,0.44449,598.42,#32,0.15354,0.19971,-0.96775,279.38,0.34873,-0.9273,-0.13604,539.99,-0.92456,-0.3166,-0.21202,282.3,#33,0.093561,-0.84854,0.52079,324.57,0.31943,-0.46985,-0.82293,506.62,0.94298,0.24335,0.22709,268.05,#34,0.81577,0.47884,0.32441,317.22,0.26577,-0.8085,0.52506,466.7,0.5137,-0.34211,-0.78681,254.13,#35,-0.95011,-0.30565,0.062186,323.85,-0.2207,0.51789,-0.82649,505.83,0.22041,-0.79898,-0.55951,267.12 |
| 15639 | | |
| 15640 | | > ui mousemode right "rotate selected models" |
| 15641 | | |
| 15642 | | > view matrix models |
| 15643 | | > #25,0.31872,0.78454,-0.53189,254.04,-0.79899,0.52427,0.29453,464.05,0.50993,0.33111,0.79394,104.36,#24,0.50551,-0.69156,-0.51596,483.68,0.86262,0.39203,0.31969,139.61,-0.01881,-0.60668,0.79473,243.25,#26,0.7962,-0.5863,0.14938,273.07,0.57344,0.81,0.12272,451.91,-0.19295,-0.012046,0.98114,281.88,#27,0.55516,-0.82465,-0.10834,306.32,-0.36309,-0.35748,0.86045,444.06,-0.7483,-0.43835,-0.49788,303.37,#28,0.18857,0.86714,0.46098,316.97,0.093587,-0.48313,0.87053,384.6,0.97759,-0.12102,-0.17226,261.01,#29,-0.22397,-0.24799,0.94252,357.23,-0.83714,-0.44623,-0.31634,496.57,0.49903,-0.85987,-0.10767,295.17,#30,0.43619,0.56976,-0.6965,333.2,-0.46141,-0.5229,-0.71671,448.04,-0.77255,0.63399,0.034808,321.7,#31,0.52907,0.58705,-0.61274,119.91,-0.013408,0.72777,0.68569,251.92,0.84847,-0.35456,0.39291,556.45,#32,0.21727,0.43004,-0.87627,267.95,0.42031,-0.85145,-0.31365,525.82,-0.88099,-0.30016,-0.36574,273.46,#33,-0.11722,-0.76181,0.63711,320.62,0.28165,-0.6407,-0.71427,502.86,0.95233,0.095715,0.28966,265.87,#34,0.6572,0.67968,0.32577,323.76,0.39469,-0.67856,0.6195,463.06,0.64211,-0.27855,-0.71421,250.13,#35,-0.90736,-0.28035,0.31321,320.22,-0.41574,0.48835,-0.76725,501.99,0.062144,-0.82639,-0.55966,264.82 |
| 15644 | | |
| 15645 | | > view matrix models |
| 15646 | | > #25,0.31322,0.81558,-0.48653,246.12,-0.79151,0.50729,0.34083,461.03,0.52479,0.27834,0.80444,108.77,#24,0.53327,-0.70355,-0.46973,470.4,0.84291,0.39494,0.36541,133.69,-0.071571,-0.5908,0.80364,249.57,#26,0.80611,-0.55837,0.196,272.42,0.53767,0.82942,0.15154,454.44,-0.24718,-0.016777,0.96882,285.66,#27,0.50942,-0.85462,-0.10055,306.29,-0.40853,-0.34303,0.84583,446.16,-0.75736,-0.3898,-0.52389,306,#28,0.23398,0.84412,0.48241,313.06,0.12093,-0.5176,0.84704,384.92,0.96469,-0.13986,-0.22319,265.42,#29,-0.23041,-0.30019,0.92563,358.55,-0.8107,-0.46691,-0.35322,496.52,0.53822,-0.83179,-0.13579,293.74,#30,0.38622,0.57867,-0.71832,334.06,-0.50335,-0.52036,-0.68983,449.83,-0.77296,0.62799,0.090295,323.02,#31,0.5647,0.5955,-0.57139,124.63,-0.002552,0.6936,0.72035,269.74,0.82529,-0.40533,0.3932,573.56,#32,0.19293,0.38736,-0.90152,269.46,0.38127,-0.87617,-0.29488,528.15,-0.90411,-0.28683,-0.31672,274.78,#33,-0.06604,-0.77828,0.62443,320.94,0.31875,-0.60946,-0.72592,503.08,0.94554,0.1511,0.28832,265.81,#34,0.69755,0.64344,0.3153,322.03,0.39327,-0.71162,0.58218,462.67,0.59897,-0.2821,-0.74944,251.41,#35,-0.91742,-0.29924,0.26229,320.47,-0.38078,0.46883,-0.797,502.18,0.11553,-0.83105,-0.54406,264.81 |
| 15647 | | |
| 15648 | | > ui mousemode right "translate selected models" |
| 15649 | | |
| 15650 | | > view matrix models |
| 15651 | | > #25,0.31322,0.81558,-0.48653,226.44,-0.79151,0.50729,0.34083,473.07,0.52479,0.27834,0.80444,98.168,#24,0.53327,-0.70355,-0.46973,450.73,0.84291,0.39494,0.36541,145.73,-0.071571,-0.5908,0.80364,238.97,#26,0.80611,-0.55837,0.196,252.74,0.53767,0.82942,0.15154,466.48,-0.24718,-0.016777,0.96882,275.06,#27,0.50942,-0.85462,-0.10055,286.62,-0.40853,-0.34303,0.84583,458.2,-0.75736,-0.3898,-0.52389,295.4,#28,0.23398,0.84412,0.48241,293.38,0.12093,-0.5176,0.84704,396.96,0.96469,-0.13986,-0.22319,254.81,#29,-0.23041,-0.30019,0.92563,338.88,-0.8107,-0.46691,-0.35322,508.56,0.53822,-0.83179,-0.13579,283.14,#30,0.38622,0.57867,-0.71832,314.38,-0.50335,-0.52036,-0.68983,461.87,-0.77296,0.62799,0.090295,312.41,#31,0.5647,0.5955,-0.57139,104.96,-0.002552,0.6936,0.72035,281.78,0.82529,-0.40533,0.3932,562.96,#32,0.19293,0.38736,-0.90152,249.78,0.38127,-0.87617,-0.29488,540.19,-0.90411,-0.28683,-0.31672,264.17,#33,-0.06604,-0.77828,0.62443,301.26,0.31875,-0.60946,-0.72592,515.12,0.94554,0.1511,0.28832,255.21,#34,0.69755,0.64344,0.3153,302.35,0.39327,-0.71162,0.58218,474.71,0.59897,-0.2821,-0.74944,240.81,#35,-0.91742,-0.29924,0.26229,300.79,-0.38078,0.46883,-0.797,514.22,0.11553,-0.83105,-0.54406,254.2 |
| 15652 | | |
| 15653 | | > view matrix models |
| 15654 | | > #25,0.31322,0.81558,-0.48653,252.03,-0.79151,0.50729,0.34083,484.65,0.52479,0.27834,0.80444,84.922,#24,0.53327,-0.70355,-0.46973,476.32,0.84291,0.39494,0.36541,157.31,-0.071571,-0.5908,0.80364,225.72,#26,0.80611,-0.55837,0.196,278.34,0.53767,0.82942,0.15154,478.05,-0.24718,-0.016777,0.96882,261.81,#27,0.50942,-0.85462,-0.10055,312.21,-0.40853,-0.34303,0.84583,469.78,-0.75736,-0.3898,-0.52389,282.15,#28,0.23398,0.84412,0.48241,318.97,0.12093,-0.5176,0.84704,408.54,0.96469,-0.13986,-0.22319,241.57,#29,-0.23041,-0.30019,0.92563,364.47,-0.8107,-0.46691,-0.35322,520.14,0.53822,-0.83179,-0.13579,269.89,#30,0.38622,0.57867,-0.71832,339.97,-0.50335,-0.52036,-0.68983,473.44,-0.77296,0.62799,0.090295,299.17,#31,0.5647,0.5955,-0.57139,130.55,-0.002552,0.6936,0.72035,293.36,0.82529,-0.40533,0.3932,549.71,#32,0.19293,0.38736,-0.90152,275.38,0.38127,-0.87617,-0.29488,551.76,-0.90411,-0.28683,-0.31672,250.93,#33,-0.06604,-0.77828,0.62443,326.86,0.31875,-0.60946,-0.72592,526.7,0.94554,0.1511,0.28832,241.96,#34,0.69755,0.64344,0.3153,327.95,0.39327,-0.71162,0.58218,486.28,0.59897,-0.2821,-0.74944,227.56,#35,-0.91742,-0.29924,0.26229,326.38,-0.38078,0.46883,-0.797,525.8,0.11553,-0.83105,-0.54406,240.96 |
| 15655 | | |
| 15656 | | > view matrix models |
| 15657 | | > #25,0.31322,0.81558,-0.48653,254.82,-0.79151,0.50729,0.34083,480.68,0.52479,0.27834,0.80444,104.69,#24,0.53327,-0.70355,-0.46973,479.1,0.84291,0.39494,0.36541,153.33,-0.071571,-0.5908,0.80364,245.49,#26,0.80611,-0.55837,0.196,281.12,0.53767,0.82942,0.15154,474.08,-0.24718,-0.016777,0.96882,281.58,#27,0.50942,-0.85462,-0.10055,315,-0.40853,-0.34303,0.84583,465.8,-0.75736,-0.3898,-0.52389,301.92,#28,0.23398,0.84412,0.48241,321.76,0.12093,-0.5176,0.84704,404.56,0.96469,-0.13986,-0.22319,261.34,#29,-0.23041,-0.30019,0.92563,367.25,-0.8107,-0.46691,-0.35322,516.16,0.53822,-0.83179,-0.13579,289.66,#30,0.38622,0.57867,-0.71832,342.76,-0.50335,-0.52036,-0.68983,469.47,-0.77296,0.62799,0.090295,318.94,#31,0.5647,0.5955,-0.57139,133.34,-0.002552,0.6936,0.72035,289.38,0.82529,-0.40533,0.3932,569.48,#32,0.19293,0.38736,-0.90152,278.16,0.38127,-0.87617,-0.29488,547.79,-0.90411,-0.28683,-0.31672,270.7,#33,-0.06604,-0.77828,0.62443,329.64,0.31875,-0.60946,-0.72592,522.72,0.94554,0.1511,0.28832,261.74,#34,0.69755,0.64344,0.3153,330.73,0.39327,-0.71162,0.58218,482.31,0.59897,-0.2821,-0.74944,247.33,#35,-0.91742,-0.29924,0.26229,329.17,-0.38078,0.46883,-0.797,521.82,0.11553,-0.83105,-0.54406,260.73 |
| 15658 | | |
| 15659 | | > view matrix models |
| 15660 | | > #25,0.31322,0.81558,-0.48653,13.603,-0.79151,0.50729,0.34083,438.49,0.52479,0.27834,0.80444,-106.13,#24,0.53327,-0.70355,-0.46973,237.89,0.84291,0.39494,0.36541,111.14,-0.071571,-0.5908,0.80364,34.665,#26,0.80611,-0.55837,0.196,39.905,0.53767,0.82942,0.15154,431.89,-0.24718,-0.016777,0.96882,70.756,#27,0.50942,-0.85462,-0.10055,73.781,-0.40853,-0.34303,0.84583,423.62,-0.75736,-0.3898,-0.52389,91.095,#28,0.23398,0.84412,0.48241,80.545,0.12093,-0.5176,0.84704,362.37,0.96469,-0.13986,-0.22319,50.513,#29,-0.23041,-0.30019,0.92563,126.04,-0.8107,-0.46691,-0.35322,473.97,0.53822,-0.83179,-0.13579,78.836,#30,0.38622,0.57867,-0.71832,101.54,-0.50335,-0.52036,-0.68983,427.28,-0.77296,0.62799,0.090295,108.11,#31,0.5647,0.5955,-0.57139,-107.88,-0.002552,0.6936,0.72035,247.2,0.82529,-0.40533,0.3932,358.66,#32,0.19293,0.38736,-0.90152,36.945,0.38127,-0.87617,-0.29488,505.6,-0.90411,-0.28683,-0.31672,59.87,#33,-0.06604,-0.77828,0.62443,88.426,0.31875,-0.60946,-0.72592,480.53,0.94554,0.1511,0.28832,50.907,#34,0.69755,0.64344,0.3153,89.517,0.39327,-0.71162,0.58218,440.12,0.59897,-0.2821,-0.74944,36.506,#35,-0.91742,-0.29924,0.26229,87.953,-0.38078,0.46883,-0.797,479.63,0.11553,-0.83105,-0.54406,49.9 |
| 15661 | | |
| 15662 | | > show #26 models |
| 15663 | | |
| 15664 | | > view matrix models |
| 15665 | | > #25,0.31322,0.81558,-0.48653,64.977,-0.79151,0.50729,0.34083,426.13,0.52479,0.27834,0.80444,12.694,#24,0.53327,-0.70355,-0.46973,289.26,0.84291,0.39494,0.36541,98.788,-0.071571,-0.5908,0.80364,153.49,#26,0.80611,-0.55837,0.196,91.279,0.53767,0.82942,0.15154,419.53,-0.24718,-0.016777,0.96882,189.58,#27,0.50942,-0.85462,-0.10055,125.16,-0.40853,-0.34303,0.84583,411.26,-0.75736,-0.3898,-0.52389,209.92,#28,0.23398,0.84412,0.48241,131.92,0.12093,-0.5176,0.84704,350.02,0.96469,-0.13986,-0.22319,169.34,#29,-0.23041,-0.30019,0.92563,177.41,-0.8107,-0.46691,-0.35322,461.62,0.53822,-0.83179,-0.13579,197.66,#30,0.38622,0.57867,-0.71832,152.92,-0.50335,-0.52036,-0.68983,414.92,-0.77296,0.62799,0.090295,226.94,#31,0.5647,0.5955,-0.57139,-56.506,-0.002552,0.6936,0.72035,234.84,0.82529,-0.40533,0.3932,477.48,#32,0.19293,0.38736,-0.90152,88.319,0.38127,-0.87617,-0.29488,493.24,-0.90411,-0.28683,-0.31672,178.7,#33,-0.06604,-0.77828,0.62443,139.8,0.31875,-0.60946,-0.72592,468.17,0.94554,0.1511,0.28832,169.73,#34,0.69755,0.64344,0.3153,140.89,0.39327,-0.71162,0.58218,427.76,0.59897,-0.2821,-0.74944,155.33,#35,-0.91742,-0.29924,0.26229,139.33,-0.38078,0.46883,-0.797,467.28,0.11553,-0.83105,-0.54406,168.73 |
| 15666 | | |
| 15667 | | > ui mousemode right "rotate selected models" |
| 15668 | | |
| 15669 | | > view matrix models |
| 15670 | | > #25,0.26233,-0.79368,-0.54886,286.65,0.69342,-0.24051,0.67921,315.3,-0.67108,-0.55877,0.48726,286.2,#24,-0.7935,0.20487,-0.57305,406.91,-0.5957,-0.45407,0.66254,508.47,-0.12447,0.86709,0.48235,-68.073,#26,-0.5393,-0.48607,-0.68767,191.25,-0.69411,-0.20579,0.68982,459.24,-0.47682,0.84934,-0.2264,239.24,#27,0.57131,0.73284,-0.36952,177.07,-0.61684,0.086413,-0.78233,469.55,-0.54139,0.67489,0.50142,202.88,#28,-0.67241,0.23445,-0.70206,245.18,0.68803,-0.15172,-0.70964,460.14,-0.2729,-0.96021,-0.059292,176.13,#29,0.43264,0.89827,0.076956,127.77,0.88138,-0.40346,-0.24573,420.91,-0.18968,0.17414,-0.96628,177.95,#30,0.69183,-0.087156,0.71678,156.94,-0.55023,0.57918,0.60149,473.7,-0.46757,-0.81052,0.35274,177.36,#31,-0.59939,-0.51786,-0.61037,231.49,0.52239,-0.83083,0.19191,828.91,-0.60649,-0.20382,0.76852,262.95,#32,0.11293,0.73365,0.67008,139.07,-0.98968,0.023201,0.1414,418.59,0.08819,-0.67913,0.7287,273.68,#33,-0.73065,0.63867,0.24135,148.41,0.6778,0.63601,0.36888,406.12,0.082094,0.43311,-0.8976,217.86,#34,-0.83583,0.52363,-0.16491,187.87,0.11651,-0.12434,-0.98537,411.39,-0.53648,-0.84282,0.042921,201.82,#35,0.51648,0.1515,0.84279,149.8,0.5486,-0.81425,-0.18982,405.81,0.65749,0.56039,-0.50366,218.03 |
| 15671 | | |
| 15672 | | > view matrix models |
| 15673 | | > #25,0.3957,-0.80395,-0.44394,263.29,0.5777,-0.15788,0.80083,305.14,-0.71392,-0.57335,0.40197,301.17,#24,-0.87698,0.098142,-0.47039,425.47,-0.46748,-0.40077,0.78794,443.21,-0.11119,0.91091,0.39735,-62.027,#26,-0.63131,-0.54097,-0.55569,194.72,-0.6375,-0.046039,0.76907,457.82,-0.44163,0.83978,-0.3158,237.83,#27,0.47821,0.71459,-0.51057,183.64,-0.74812,0.026924,-0.66302,466.95,-0.46004,0.69903,0.54747,200.1,#28,-0.53944,0.23719,-0.80793,250.08,0.76061,-0.27434,-0.58839,444.2,-0.36121,-0.93192,-0.032417,177.48,#29,0.57907,0.81255,0.06654,127.79,0.77836,-0.52673,-0.34164,424.93,-0.24255,0.24963,-0.93747,177.05,#30,0.60564,0.03682,0.79488,165.33,-0.69558,0.50967,0.50637,471.99,-0.38649,-0.85958,0.33429,173.4,#31,-0.48412,-0.64181,-0.59474,295.04,0.55572,-0.75054,0.35759,816.63,-0.67587,-0.15739,0.72001,232.22,#32,-0.056066,0.74907,0.66011,135.41,-0.98273,-0.15819,0.09604,429.49,0.17636,-0.64333,0.745,273.06,#33,-0.61012,0.72102,0.32847,144.37,0.79225,0.56028,0.24171,410.65,-0.0097597,0.4077,-0.91307,218.99,#34,-0.78688,0.52291,-0.3277,184.66,0.20177,-0.28384,-0.9374,407.96,-0.58319,-0.80374,0.11784,204.44,#35,0.57874,-0.0043097,0.8155,145.68,0.51464,-0.77379,-0.36931,410.14,0.63262,0.63342,-0.4456,219.25 |
| 15674 | | |
| 15675 | | > ui mousemode right "translate selected models" |
| 15676 | | |
| 15677 | | > view matrix models |
| 15678 | | > #25,0.3957,-0.80395,-0.44394,286.28,0.5777,-0.15788,0.80083,303.44,-0.71392,-0.57335,0.40197,352.12,#24,-0.87698,0.098142,-0.47039,448.47,-0.46748,-0.40077,0.78794,441.5,-0.11119,0.91091,0.39735,-11.079,#26,-0.63131,-0.54097,-0.55569,217.71,-0.6375,-0.046039,0.76907,456.11,-0.44163,0.83978,-0.3158,288.78,#27,0.47821,0.71459,-0.51057,206.64,-0.74812,0.026924,-0.66302,465.25,-0.46004,0.69903,0.54747,251.05,#28,-0.53944,0.23719,-0.80793,273.08,0.76061,-0.27434,-0.58839,442.49,-0.36121,-0.93192,-0.032417,228.42,#29,0.57907,0.81255,0.06654,150.79,0.77836,-0.52673,-0.34164,423.22,-0.24255,0.24963,-0.93747,228,#30,0.60564,0.03682,0.79488,188.33,-0.69558,0.50967,0.50637,470.28,-0.38649,-0.85958,0.33429,224.35,#31,-0.48412,-0.64181,-0.59474,318.04,0.55572,-0.75054,0.35759,814.92,-0.67587,-0.15739,0.72001,283.17,#32,-0.056066,0.74907,0.66011,158.41,-0.98273,-0.15819,0.09604,427.79,0.17636,-0.64333,0.745,324.01,#33,-0.61012,0.72102,0.32847,167.37,0.79225,0.56028,0.24171,408.95,-0.0097597,0.4077,-0.91307,269.94,#34,-0.78688,0.52291,-0.3277,207.65,0.20177,-0.28384,-0.9374,406.25,-0.58319,-0.80374,0.11784,255.39,#35,0.57874,-0.0043097,0.8155,168.67,0.51464,-0.77379,-0.36931,408.43,0.63262,0.63342,-0.4456,270.2 |
| 15679 | | |
| 15680 | | > ui mousemode right "rotate selected models" |
| 15681 | | |
| 15682 | | > view matrix models |
| 15683 | | > #25,0.41605,-0.76911,-0.48516,280.37,0.77906,0.026297,0.6264,273.77,-0.46901,-0.63858,0.61012,309.75,#24,-0.85734,0.062168,-0.51098,457.14,-0.41537,-0.66987,0.61542,522.1,-0.30403,0.73987,0.60013,19.292,#26,-0.59065,-0.58174,-0.5592,211.06,-0.46868,-0.31679,0.82461,438.06,-0.65686,0.74915,-0.085536,294.54,#27,0.52092,0.67697,-0.51995,201.69,-0.5576,-0.19134,-0.80776,458.67,-0.64632,0.7107,0.2778,261.11,#28,-0.54043,0.29173,-0.78919,269.78,0.83124,0.039904,-0.55448,444.93,-0.13027,-0.95567,-0.26407,236.24,#29,0.56968,0.81254,0.12345,148.23,0.82026,-0.5715,-0.023628,425.7,0.051355,0.11472,-0.99207,222.74,#30,0.64298,0.067035,0.76294,184.64,-0.53015,0.75788,0.3802,471.8,-0.55273,-0.64894,0.52284,236.41,#31,-0.46365,-0.61263,-0.64009,301.91,0.73812,-0.6667,0.10344,780.75,-0.49011,-0.4245,0.76131,409.21,#32,-0.038698,0.78492,0.61839,150.81,-0.98804,0.062399,-0.14103,399.43,-0.14929,-0.61645,0.77311,315.48,#33,-0.62979,0.68401,0.36809,163.02,0.7483,0.40717,0.52369,398.93,0.20833,0.60526,-0.76828,258.82,#34,-0.76118,0.57068,-0.3081,204.06,0.37038,-0.0074568,-0.92885,401.39,-0.53238,-0.82114,-0.20569,246.49,#35,0.53169,-0.015962,0.84679,164.33,0.29078,-0.93561,-0.20021,398.37,0.79546,0.35268,-0.49282,258.98 |
| 15684 | | |
| 15685 | | > view matrix models |
| 15686 | | > #25,0.33522,-0.78133,-0.52645,295.01,0.83537,-0.01188,0.54955,280.01,-0.43564,-0.624,0.64872,300.35,#24,-0.82295,0.13682,-0.55139,442.94,-0.47554,-0.69694,0.53679,557.16,-0.31084,0.70396,0.63861,20.016,#26,-0.55987,-0.53567,-0.63214,211.04,-0.48729,-0.40418,0.77408,437.94,-0.67015,0.74141,-0.034739,294.58,#27,0.55519,0.70578,-0.44005,199.18,-0.47612,-0.16413,-0.86393,459.23,-0.68197,0.68916,0.24491,262.39,#28,-0.61496,0.26733,-0.74186,267.7,0.78456,0.11273,-0.60973,452.92,-0.079373,-0.95699,-0.27906,235.77,#29,0.49521,0.86244,0.10468,148.1,0.86474,-0.50092,0.036151,423.5,0.083613,0.072616,-0.99385,223.26,#30,0.67621,-0.014144,0.73658,180.52,-0.4424,0.79168,0.42134,471.97,-0.58909,-0.61078,0.52908,238.66,#31,-0.53758,-0.55933,-0.631,273.3,0.71644,-0.6976,0.0079897,781.39,-0.44465,-0.44778,0.77574,424.96,#32,0.046498,0.76341,0.64424,154.92,-0.97901,0.16293,-0.12241,393.06,-0.19842,-0.62503,0.75496,314.5,#33,-0.6896,0.65726,0.30408,165.96,0.67744,0.43703,0.59168,396.43,0.25599,0.61402,-0.74663,257.7,#34,-0.80194,0.5521,-0.22821,206.35,0.32591,0.08416,-0.94165,403.18,-0.50068,-0.82952,-0.24743,244.86,#35,0.51986,0.074768,0.85097,167.31,0.29822,-0.94937,-0.098774,395.99,0.8005,0.30513,-0.51584,257.81 |
| 15687 | | |
| 15688 | | > ui mousemode right "translate selected models" |
| 15689 | | |
| 15690 | | > view matrix models |
| 15691 | | > #25,0.33522,-0.78133,-0.52645,292.05,0.83537,-0.01188,0.54955,264.57,-0.43564,-0.624,0.64872,325.87,#24,-0.82295,0.13682,-0.55139,439.98,-0.47554,-0.69694,0.53679,541.72,-0.31084,0.70396,0.63861,45.537,#26,-0.55987,-0.53567,-0.63214,208.08,-0.48729,-0.40418,0.77408,422.49,-0.67015,0.74141,-0.034739,320.1,#27,0.55519,0.70578,-0.44005,196.22,-0.47612,-0.16413,-0.86393,443.78,-0.68197,0.68916,0.24491,287.91,#28,-0.61496,0.26733,-0.74186,264.74,0.78456,0.11273,-0.60973,437.47,-0.079373,-0.95699,-0.27906,261.29,#29,0.49521,0.86244,0.10468,145.14,0.86474,-0.50092,0.036151,408.06,0.083613,0.072616,-0.99385,248.78,#30,0.67621,-0.014144,0.73658,177.56,-0.4424,0.79168,0.42134,456.52,-0.58909,-0.61078,0.52908,264.18,#31,-0.53758,-0.55933,-0.631,270.34,0.71644,-0.6976,0.0079897,765.95,-0.44465,-0.44778,0.77574,450.48,#32,0.046498,0.76341,0.64424,151.95,-0.97901,0.16293,-0.12241,377.61,-0.19842,-0.62503,0.75496,340.02,#33,-0.6896,0.65726,0.30408,162.99,0.67744,0.43703,0.59168,380.99,0.25599,0.61402,-0.74663,283.22,#34,-0.80194,0.5521,-0.22821,203.38,0.32591,0.08416,-0.94165,387.74,-0.50068,-0.82952,-0.24743,270.38,#35,0.51986,0.074768,0.85097,164.35,0.29822,-0.94937,-0.098774,380.54,0.8005,0.30513,-0.51584,283.33 |
| 15692 | | |
| 15693 | | > view matrix models |
| 15694 | | > #25,0.33522,-0.78133,-0.52645,279.89,0.83537,-0.01188,0.54955,287.42,-0.43564,-0.624,0.64872,316.99,#24,-0.82295,0.13682,-0.55139,427.82,-0.47554,-0.69694,0.53679,564.57,-0.31084,0.70396,0.63861,36.66,#26,-0.55987,-0.53567,-0.63214,195.91,-0.48729,-0.40418,0.77408,445.34,-0.67015,0.74141,-0.034739,311.22,#27,0.55519,0.70578,-0.44005,184.06,-0.47612,-0.16413,-0.86393,466.63,-0.68197,0.68916,0.24491,279.03,#28,-0.61496,0.26733,-0.74186,252.58,0.78456,0.11273,-0.60973,460.32,-0.079373,-0.95699,-0.27906,252.41,#29,0.49521,0.86244,0.10468,132.98,0.86474,-0.50092,0.036151,430.9,0.083613,0.072616,-0.99385,239.9,#30,0.67621,-0.014144,0.73658,165.4,-0.4424,0.79168,0.42134,479.37,-0.58909,-0.61078,0.52908,255.3,#31,-0.53758,-0.55933,-0.631,258.18,0.71644,-0.6976,0.0079897,788.79,-0.44465,-0.44778,0.77574,441.6,#32,0.046498,0.76341,0.64424,139.79,-0.97901,0.16293,-0.12241,400.46,-0.19842,-0.62503,0.75496,331.14,#33,-0.6896,0.65726,0.30408,150.83,0.67744,0.43703,0.59168,403.84,0.25599,0.61402,-0.74663,274.35,#34,-0.80194,0.5521,-0.22821,191.22,0.32591,0.08416,-0.94165,410.58,-0.50068,-0.82952,-0.24743,261.5,#35,0.51986,0.074768,0.85097,152.19,0.29822,-0.94937,-0.098774,403.39,0.8005,0.30513,-0.51584,274.46 |
| 15695 | | |
| 15696 | | > ui mousemode right zoom |
| 15697 | | |
| 15698 | | > ui mousemode right "rotate selected models" |
| 15699 | | |
| 15700 | | > view matrix models |
| 15701 | | > #25,-0.29841,-0.56669,-0.768,344.37,0.32437,-0.81698,0.47679,454.9,-0.89763,-0.10684,0.42761,313.67,#24,-0.2942,0.55512,-0.778,274.77,-0.87699,0.16678,0.45063,488.68,0.37992,0.81488,0.43777,-100.21,#26,-0.08461,-0.14238,-0.98619,176.76,-0.9964,0.01745,0.082966,495.03,0.0053963,0.98966,-0.14335,265.48,#27,0.74114,0.62627,0.24186,154.22,-0.44522,0.72814,-0.52114,478.89,-0.50249,0.27856,0.81848,236.14,#28,-0.97967,0.13877,-0.1449,209.99,0.066924,-0.45485,-0.88805,491.41,-0.18914,-0.87969,0.43631,189.49,#29,-0.20599,0.97614,0.068686,140.38,0.77162,0.2052,-0.60208,407.64,-0.60181,-0.071022,-0.79548,248.33,#30,0.80779,-0.5278,0.2625,132.16,-0.30393,0.0086464,0.95266,460.46,-0.50508,-0.84932,-0.15343,220.41,#31,-0.87126,0.052324,-0.48803,-6.8934,-0.17924,-0.95955,0.21711,800.69,-0.45692,0.27664,0.84539,157.38,#32,0.6883,0.47114,0.55161,164.37,-0.64273,0.04348,0.76486,456.34,0.33637,-0.88098,0.33275,328.02,#33,-0.96913,0.19158,-0.15516,171.2,0.19907,0.97939,-0.034109,425.15,0.14543,-0.063945,-0.9873,279.65,#34,-0.80838,0.36862,0.45896,197.08,-0.56029,-0.24269,-0.79194,440.14,-0.18054,-0.89734,0.40273,248.86,#35,0.17847,0.68236,0.7089,172.51,0.9623,-0.27132,0.018895,425.66,0.20523,0.6788,-0.70506,279.36 |
| 15702 | | |
| 15703 | | > ui mousemode right "translate selected models" |
| 15704 | | |
| 15705 | | > view matrix models |
| 15706 | | > #25,-0.29841,-0.56669,-0.768,369.85,0.32437,-0.81698,0.47679,421.84,-0.89763,-0.10684,0.42761,322.69,#24,-0.2942,0.55512,-0.778,300.25,-0.87699,0.16678,0.45063,455.62,0.37992,0.81488,0.43777,-91.192,#26,-0.08461,-0.14238,-0.98619,202.24,-0.9964,0.01745,0.082966,461.97,0.0053963,0.98966,-0.14335,274.5,#27,0.74114,0.62627,0.24186,179.7,-0.44522,0.72814,-0.52114,445.83,-0.50249,0.27856,0.81848,245.15,#28,-0.97967,0.13877,-0.1449,235.47,0.066924,-0.45485,-0.88805,458.35,-0.18914,-0.87969,0.43631,198.5,#29,-0.20599,0.97614,0.068686,165.86,0.77162,0.2052,-0.60208,374.58,-0.60181,-0.071022,-0.79548,257.34,#30,0.80779,-0.5278,0.2625,157.64,-0.30393,0.0086464,0.95266,427.4,-0.50508,-0.84932,-0.15343,229.42,#31,-0.87126,0.052324,-0.48803,18.586,-0.17924,-0.95955,0.21711,767.63,-0.45692,0.27664,0.84539,166.4,#32,0.6883,0.47114,0.55161,189.85,-0.64273,0.04348,0.76486,423.28,0.33637,-0.88098,0.33275,337.03,#33,-0.96913,0.19158,-0.15516,196.68,0.19907,0.97939,-0.034109,392.09,0.14543,-0.063945,-0.9873,288.66,#34,-0.80838,0.36862,0.45896,222.56,-0.56029,-0.24269,-0.79194,407.08,-0.18054,-0.89734,0.40273,257.88,#35,0.17847,0.68236,0.7089,197.99,0.9623,-0.27132,0.018895,392.6,0.20523,0.6788,-0.70506,288.37 |
| 15707 | | |
| 15708 | | > ui mousemode right "rotate selected models" |
| 15709 | | |
| 15710 | | > view matrix models |
| 15711 | | > #25,-0.070975,-0.78164,-0.61967,357.22,0.61024,-0.52544,0.59289,341.22,-0.78903,-0.33607,0.51428,332.66,#24,-0.60203,0.47926,-0.63865,351.35,-0.7885,-0.23083,0.57007,494.14,0.1258,0.84678,0.51686,-59.594,#26,-0.39913,-0.2448,-0.88361,218.18,-0.87917,-0.17139,0.44461,446.14,-0.26029,0.9543,-0.14682,291.6,#27,0.61335,0.78899,-0.035851,195.29,-0.53721,0.38349,-0.75123,446.1,-0.57896,0.48003,0.65907,258.35,#28,-0.87722,0.088441,-0.47187,257.22,0.4387,-0.25155,-0.86271,449.65,-0.195,-0.96379,0.18187,218.41,#29,0.12424,0.99165,-0.034486,158.03,0.91536,-0.12795,-0.38176,383.07,-0.38299,0.015862,-0.92362,250.88,#30,0.72153,-0.39336,0.56978,170.5,-0.43068,0.38937,0.81419,440.57,-0.54213,-0.83286,0.11153,237.64,#31,-0.82258,-0.29055,-0.48882,156.12,0.24165,-0.95674,0.16204,812.38,-0.51475,0.015167,0.85721,262.34,#32,0.40166,0.56056,0.72418,186.79,-0.89871,0.089286,0.42935,400.26,0.17602,-0.82329,0.53964,341.3,#33,-0.86442,0.50114,-0.040511,188.93,0.4757,0.8413,0.25674,381.07,0.16275,0.20266,-0.96563,286.65,#34,-0.918,0.3745,0.1305,221.67,-0.19224,-0.13239,-0.97238,393.25,-0.34688,-0.91773,0.19353,261.72,#35,0.45164,0.47465,0.75546,190.35,0.76612,-0.64028,-0.055731,381.16,0.45726,0.60394,-0.65282,286.54 |
| 15712 | | |
| 15713 | | > ui mousemode right "translate selected models" |
| 15714 | | |
| 15715 | | > view matrix models |
| 15716 | | > #25,-0.070975,-0.78164,-0.61967,353.15,0.61024,-0.52544,0.59289,343.18,-0.78903,-0.33607,0.51428,329.12,#24,-0.60203,0.47926,-0.63865,347.28,-0.7885,-0.23083,0.57007,496.1,0.1258,0.84678,0.51686,-63.13,#26,-0.39913,-0.2448,-0.88361,214.11,-0.87917,-0.17139,0.44461,448.1,-0.26029,0.9543,-0.14682,288.07,#27,0.61335,0.78899,-0.035851,191.22,-0.53721,0.38349,-0.75123,448.06,-0.57896,0.48003,0.65907,254.82,#28,-0.87722,0.088441,-0.47187,253.14,0.4387,-0.25155,-0.86271,451.61,-0.195,-0.96379,0.18187,214.87,#29,0.12424,0.99165,-0.034486,153.96,0.91536,-0.12795,-0.38176,385.03,-0.38299,0.015862,-0.92362,247.35,#30,0.72153,-0.39336,0.56978,166.43,-0.43068,0.38937,0.81419,442.53,-0.54213,-0.83286,0.11153,234.11,#31,-0.82258,-0.29055,-0.48882,152.05,0.24165,-0.95674,0.16204,814.34,-0.51475,0.015167,0.85721,258.81,#32,0.40166,0.56056,0.72418,182.72,-0.89871,0.089286,0.42935,402.22,0.17602,-0.82329,0.53964,337.76,#33,-0.86442,0.50114,-0.040511,184.85,0.4757,0.8413,0.25674,383.04,0.16275,0.20266,-0.96563,283.11,#34,-0.918,0.3745,0.1305,217.6,-0.19224,-0.13239,-0.97238,395.21,-0.34688,-0.91773,0.19353,258.19,#35,0.45164,0.47465,0.75546,186.28,0.76612,-0.64028,-0.055731,383.12,0.45726,0.60394,-0.65282,283.01 |
| 15717 | | |
| 15718 | | > view matrix models |
| 15719 | | > #25,-0.070975,-0.78164,-0.61967,355.44,0.61024,-0.52544,0.59289,347.36,-0.78903,-0.33607,0.51428,332.38,#24,-0.60203,0.47926,-0.63865,349.57,-0.7885,-0.23083,0.57007,500.28,0.1258,0.84678,0.51686,-59.87,#26,-0.39913,-0.2448,-0.88361,216.4,-0.87917,-0.17139,0.44461,452.28,-0.26029,0.9543,-0.14682,291.33,#27,0.61335,0.78899,-0.035851,193.51,-0.53721,0.38349,-0.75123,452.24,-0.57896,0.48003,0.65907,258.08,#28,-0.87722,0.088441,-0.47187,255.43,0.4387,-0.25155,-0.86271,455.79,-0.195,-0.96379,0.18187,218.13,#29,0.12424,0.99165,-0.034486,156.25,0.91536,-0.12795,-0.38176,389.21,-0.38299,0.015862,-0.92362,250.6,#30,0.72153,-0.39336,0.56978,168.72,-0.43068,0.38937,0.81419,446.71,-0.54213,-0.83286,0.11153,237.37,#31,-0.82258,-0.29055,-0.48882,154.34,0.24165,-0.95674,0.16204,818.52,-0.51475,0.015167,0.85721,262.07,#32,0.40166,0.56056,0.72418,185.01,-0.89871,0.089286,0.42935,406.4,0.17602,-0.82329,0.53964,341.02,#33,-0.86442,0.50114,-0.040511,187.14,0.4757,0.8413,0.25674,387.21,0.16275,0.20266,-0.96563,286.37,#34,-0.918,0.3745,0.1305,219.89,-0.19224,-0.13239,-0.97238,399.39,-0.34688,-0.91773,0.19353,261.45,#35,0.45164,0.47465,0.75546,188.57,0.76612,-0.64028,-0.055731,387.3,0.45726,0.60394,-0.65282,286.27 |
| 15720 | | |
| 15721 | | > ui mousemode right zoom |
| 15722 | | |
| 15723 | | > ui mousemode right "move picked models" |
| 15724 | | |
| 15725 | | > ui mousemode right "rotate selected models" |
| 15726 | | |
| 15727 | | > view matrix models |
| 15728 | | > #25,-0.054026,-0.7666,-0.63985,355.06,0.80471,-0.41281,0.42665,324.31,-0.59121,-0.49184,0.63919,319.25,#24,-0.59787,0.45685,-0.65867,359.04,-0.79322,-0.45562,0.40399,579.82,-0.11554,0.764,0.63479,-15.379,#26,-0.38308,-0.27054,-0.88321,216.28,-0.77325,-0.42913,0.46683,436.34,-0.50531,0.86177,-0.044808,304.63,#27,0.63486,0.77115,-0.047665,194.35,-0.35525,0.23657,-0.90434,445.47,-0.68611,0.59106,0.42414,271.99,#28,-0.87538,0.11855,-0.46868,257.36,0.4745,0.025151,-0.8799,460.02,-0.092528,-0.99263,-0.078271,236.48,#29,0.1265,0.99196,-0.0042326,157.92,0.98575,-0.12618,-0.11124,386.93,-0.11088,0.0098987,-0.99378,246.25,#30,0.74092,-0.3729,0.55856,170.22,-0.26294,0.60422,0.75218,445.86,-0.61798,-0.70417,0.34963,249.82,#31,-0.80968,-0.28175,-0.51482,151.59,0.37372,-0.9239,-0.082136,796.29,-0.4525,-0.2589,0.85335,375.96,#32,0.40497,0.58316,0.70422,183.9,-0.91185,0.31434,0.26406,378.45,-0.067371,-0.74908,0.65905,338.72,#33,-0.87324,0.48706,-0.015124,187.79,0.41105,0.75293,0.51394,375.15,0.26171,0.44258,-0.85769,280.99,#34,-0.90575,0.40202,0.13412,221.13,-0.089794,0.12724,-0.9878,393.79,-0.41419,-0.90674,-0.079152,261.41,#35,0.43097,0.46313,0.77445,189.22,0.61015,-0.78187,0.12803,375.26,0.66481,0.41735,-0.61955,280.95 |
| 15729 | | |
| 15730 | | > view matrix models |
| 15731 | | > #25,0.35959,-0.72077,-0.59262,297.91,0.76862,-0.13131,0.62608,270.65,-0.52907,-0.68063,0.50678,350.13,#24,-0.78305,0.083593,-0.61632,466.17,-0.54255,-0.5763,0.61116,505.97,-0.30409,0.81295,0.49662,44.2,#26,-0.48809,-0.59432,-0.63918,212.19,-0.60115,-0.30201,0.73987,423.18,-0.63275,0.74537,-0.20987,312.55,#27,0.62304,0.64253,-0.44607,202.97,-0.55776,-0.034868,-0.82927,438.91,-0.54839,0.76546,0.33666,276.54,#28,-0.61817,0.3517,-0.70297,273.73,0.7439,-0.027118,-0.66774,430.7,-0.25391,-0.93572,-0.24487,257.33,#29,0.47097,0.86046,0.19439,156.28,0.88211,-0.4572,-0.11339,396.06,-0.0086885,0.22488,-0.97435,239.11,#30,0.73449,0.028462,0.67802,186.34,-0.50652,0.68792,0.51982,447.29,-0.45163,-0.72523,0.51968,249.57,#31,-0.50663,-0.50435,-0.69926,256.53,0.62302,-0.77479,0.10743,784.3,-0.59596,-0.38123,0.70675,392.94,#32,0.080793,0.81447,0.57455,155.24,-0.99597,0.088545,0.014534,380.18,-0.039036,-0.57341,0.81834,334.21,#33,-0.72133,0.59103,0.36107,171.36,0.68721,0.5459,0.47931,375.15,0.086178,0.59387,-0.79993,278.77,#34,-0.7582,0.62407,-0.18888,212.64,0.2206,-0.027073,-0.97499,381.09,-0.61357,-0.7809,-0.11714,268.62,#35,0.43952,0.062454,0.89606,172.71,0.43316,-0.88866,-0.15053,374.77,0.78689,0.4543,-0.41763,279.07 |
| 15732 | | |
| 15733 | | > ui mousemode right "translate selected models" |
| 15734 | | |
| 15735 | | > view matrix models |
| 15736 | | > #25,0.35959,-0.72077,-0.59262,302,0.76862,-0.13131,0.62608,277.81,-0.52907,-0.68063,0.50678,338.55,#24,-0.78305,0.083593,-0.61632,470.26,-0.54255,-0.5763,0.61116,513.13,-0.30409,0.81295,0.49662,32.611,#26,-0.48809,-0.59432,-0.63918,216.27,-0.60115,-0.30201,0.73987,430.34,-0.63275,0.74537,-0.20987,300.96,#27,0.62304,0.64253,-0.44607,207.05,-0.55776,-0.034868,-0.82927,446.07,-0.54839,0.76546,0.33666,264.95,#28,-0.61817,0.3517,-0.70297,277.81,0.7439,-0.027118,-0.66774,437.86,-0.25391,-0.93572,-0.24487,245.74,#29,0.47097,0.86046,0.19439,160.36,0.88211,-0.4572,-0.11339,403.22,-0.0086885,0.22488,-0.97435,227.52,#30,0.73449,0.028462,0.67802,190.43,-0.50652,0.68792,0.51982,454.44,-0.45163,-0.72523,0.51968,237.98,#31,-0.50663,-0.50435,-0.69926,260.62,0.62302,-0.77479,0.10743,791.46,-0.59596,-0.38123,0.70675,381.35,#32,0.080793,0.81447,0.57455,159.32,-0.99597,0.088545,0.014534,387.34,-0.039036,-0.57341,0.81834,322.62,#33,-0.72133,0.59103,0.36107,175.45,0.68721,0.5459,0.47931,382.31,0.086178,0.59387,-0.79993,267.18,#34,-0.7582,0.62407,-0.18888,216.72,0.2206,-0.027073,-0.97499,388.24,-0.61357,-0.7809,-0.11714,257.03,#35,0.43952,0.062454,0.89606,176.79,0.43316,-0.88866,-0.15053,381.93,0.78689,0.4543,-0.41763,267.48 |
| 15737 | | |
| 15738 | | > view matrix models |
| 15739 | | > #25,0.35959,-0.72077,-0.59262,302.23,0.76862,-0.13131,0.62608,281.18,-0.52907,-0.68063,0.50678,338.86,#24,-0.78305,0.083593,-0.61632,470.48,-0.54255,-0.5763,0.61116,516.49,-0.30409,0.81295,0.49662,32.928,#26,-0.48809,-0.59432,-0.63918,216.5,-0.60115,-0.30201,0.73987,433.7,-0.63275,0.74537,-0.20987,301.28,#27,0.62304,0.64253,-0.44607,207.28,-0.55776,-0.034868,-0.82927,449.43,-0.54839,0.76546,0.33666,265.27,#28,-0.61817,0.3517,-0.70297,278.04,0.7439,-0.027118,-0.66774,441.22,-0.25391,-0.93572,-0.24487,246.06,#29,0.47097,0.86046,0.19439,160.59,0.88211,-0.4572,-0.11339,406.58,-0.0086885,0.22488,-0.97435,227.84,#30,0.73449,0.028462,0.67802,190.65,-0.50652,0.68792,0.51982,457.81,-0.45163,-0.72523,0.51968,238.3,#31,-0.50663,-0.50435,-0.69926,260.84,0.62302,-0.77479,0.10743,794.82,-0.59596,-0.38123,0.70675,381.67,#32,0.080793,0.81447,0.57455,159.55,-0.99597,0.088545,0.014534,390.71,-0.039036,-0.57341,0.81834,322.94,#33,-0.72133,0.59103,0.36107,175.67,0.68721,0.5459,0.47931,385.67,0.086178,0.59387,-0.79993,267.5,#34,-0.7582,0.62407,-0.18888,216.95,0.2206,-0.027073,-0.97499,391.61,-0.61357,-0.7809,-0.11714,257.35,#35,0.43952,0.062454,0.89606,177.02,0.43316,-0.88866,-0.15053,385.29,0.78689,0.4543,-0.41763,267.8 |
| 15740 | | |
| 15741 | | > color #24 #bec8cfff models |
| 15742 | | |
| 15743 | | > view matrix models |
| 15744 | | > #25,0.35959,-0.72077,-0.59262,296.57,0.76862,-0.13131,0.62608,277.75,-0.52907,-0.68063,0.50678,339.64,#24,-0.78305,0.083593,-0.61632,464.83,-0.54255,-0.5763,0.61116,513.07,-0.30409,0.81295,0.49662,33.709,#26,-0.48809,-0.59432,-0.63918,210.85,-0.60115,-0.30201,0.73987,430.27,-0.63275,0.74537,-0.20987,302.06,#27,0.62304,0.64253,-0.44607,201.63,-0.55776,-0.034868,-0.82927,446,-0.54839,0.76546,0.33666,266.05,#28,-0.61817,0.3517,-0.70297,272.39,0.7439,-0.027118,-0.66774,437.79,-0.25391,-0.93572,-0.24487,246.84,#29,0.47097,0.86046,0.19439,154.94,0.88211,-0.4572,-0.11339,403.16,-0.0086885,0.22488,-0.97435,228.62,#30,0.73449,0.028462,0.67802,185,-0.50652,0.68792,0.51982,454.38,-0.45163,-0.72523,0.51968,239.08,#31,-0.50663,-0.50435,-0.69926,255.19,0.62302,-0.77479,0.10743,791.4,-0.59596,-0.38123,0.70675,382.45,#32,0.080793,0.81447,0.57455,153.9,-0.99597,0.088545,0.014534,387.28,-0.039036,-0.57341,0.81834,323.72,#33,-0.72133,0.59103,0.36107,170.02,0.68721,0.5459,0.47931,382.25,0.086178,0.59387,-0.79993,268.28,#34,-0.7582,0.62407,-0.18888,211.3,0.2206,-0.027073,-0.97499,388.18,-0.61357,-0.7809,-0.11714,258.13,#35,0.43952,0.062454,0.89606,171.37,0.43316,-0.88866,-0.15053,381.87,0.78689,0.4543,-0.41763,268.58 |
| 15745 | | |
| 15746 | | > ui mousemode right "rotate selected models" |
| 15747 | | |
| 15748 | | > view matrix models |
| 15749 | | > #25,0.27308,-0.7906,-0.54808,308.72,0.95664,0.16317,0.24127,253.82,-0.10132,-0.5902,0.80087,252.62,#24,-0.7967,0.19415,-0.57234,433.39,-0.38408,-0.89383,0.23142,622.8,-0.46664,0.4042,0.78668,92.642,#26,-0.54022,-0.4948,-0.68069,214.76,-0.24751,-0.67968,0.69049,397.2,-0.80431,0.54149,0.24471,304.02,#27,0.57144,0.72765,-0.37945,200.97,-0.15905,-0.35541,-0.92108,427.86,-0.80508,0.5867,-0.08736,281.67,#28,-0.66506,0.24155,-0.70665,269.24,0.71753,0.46898,-0.51499,436.17,0.20701,-0.84954,-0.48522,254.95,#29,0.44062,0.89381,0.083438,151.54,0.80654,-0.43497,0.40036,405.43,0.39414,-0.10911,-0.91255,231.97,#30,0.6918,-0.076025,0.71808,181.09,-0.15332,0.9563,0.24896,447.06,-0.70562,-0.28233,0.64991,264.07,#31,-0.59039,-0.5221,-0.61551,257.47,0.79157,-0.52353,-0.31518,673.46,-0.15768,-0.6733,0.72236,550.38,#32,0.10501,0.73958,0.66482,162,-0.83538,0.4283,-0.34452,344.54,-0.53955,-0.51921,0.66281,306,#33,-0.7264,0.63953,0.25168,171.73,0.49157,0.22754,0.84058,368.97,0.48031,0.73432,-0.47967,254.36,#34,-0.83035,0.52991,-0.1724,211.36,0.43123,0.41511,-0.80107,382.57,-0.35293,-0.73951,-0.5732,245.05,#35,0.51479,0.1408,0.84567,173.11,0.021873,-0.98826,0.15123,368.61,0.85704,-0.059354,-0.51183,254.31 |
| 15750 | | |
| 15751 | | > show #!25 models |
| 15752 | | |
| 15753 | | > hide #!24 models |
| 15754 | | |
| 15755 | | > select subtract #24 |
| 15756 | | |
| 15757 | | 40824 atoms, 41582 bonds, 1 pseudobond, 5145 residues, 13 models selected |
| 15758 | | |
| 15759 | | > hide #26 models |
| 15760 | | |
| 15761 | | > select subtract #26 |
| 15762 | | |
| 15763 | | 31014 atoms, 31550 bonds, 1 pseudobond, 3912 residues, 12 models selected |
| 15764 | | |
| 15765 | | > select subtract #27 |
| 15766 | | |
| 15767 | | 23513 atoms, 23931 bonds, 1 pseudobond, 2959 residues, 11 models selected |
| 15768 | | |
| 15769 | | > select subtract #28 |
| 15770 | | |
| 15771 | | 22056 atoms, 22448 bonds, 1 pseudobond, 2778 residues, 10 models selected |
| 15772 | | |
| 15773 | | > select subtract #29 |
| 15774 | | |
| 15775 | | 20599 atoms, 20965 bonds, 1 pseudobond, 2597 residues, 9 models selected |
| 15776 | | |
| 15777 | | > select subtract #30 |
| 15778 | | |
| 15779 | | 13385 atoms, 13592 bonds, 1 pseudobond, 1692 residues, 8 models selected |
| 15780 | | |
| 15781 | | > select subtract #31 |
| 15782 | | |
| 15783 | | 11923 atoms, 12111 bonds, 1 pseudobond, 1513 residues, 7 models selected |
| 15784 | | |
| 15785 | | > select subtract #32 |
| 15786 | | |
| 15787 | | 5250 atoms, 5325 bonds, 660 residues, 5 models selected |
| 15788 | | |
| 15789 | | > select subtract #33 |
| 15790 | | |
| 15791 | | 3830 atoms, 3884 bonds, 483 residues, 4 models selected |
| 15792 | | |
| 15793 | | > select subtract #34 |
| 15794 | | |
| 15795 | | 1463 atoms, 1486 bonds, 185 residues, 3 models selected |
| 15796 | | |
| 15797 | | > select subtract #35 |
| 15798 | | |
| 15799 | | 2 models selected |
| 15800 | | |
| 15801 | | > view matrix models |
| 15802 | | > #25,0.065191,-0.73992,-0.66953,341.05,0.99118,-0.029589,0.12921,286.68,-0.11541,-0.67204,0.73146,272.49 |
| 15803 | | |
| 15804 | | > view matrix models |
| 15805 | | > #25,0.0066436,-0.72635,-0.68729,348.23,0.9992,-0.022225,0.033147,296.69,-0.039352,-0.68696,0.72563,266.4 |
| 15806 | | |
| 15807 | | > hide #!13 models |
| 15808 | | |
| 15809 | | > view matrix models |
| 15810 | | > #25,0.054396,-0.76294,-0.64417,341.9,0.97012,0.19314,-0.14683,296.4,0.23644,-0.61694,0.75066,223.85 |
| 15811 | | |
| 15812 | | > view matrix models |
| 15813 | | > #25,0.51727,-0.85449,-0.047762,227.32,0.74747,0.4239,0.51147,213.16,-0.41679,-0.30027,0.85798,246.64 |
| 15814 | | |
| 15815 | | > ui mousemode right "translate selected models" |
| 15816 | | |
| 15817 | | > view matrix models |
| 15818 | | > #25,0.51727,-0.85449,-0.047762,195.48,0.74747,0.4239,0.51147,193.78,-0.41679,-0.30027,0.85798,230.65 |
| 15819 | | |
| 15820 | | > show #!13 models |
| 15821 | | |
| 15822 | | > view matrix models |
| 15823 | | > #25,0.51727,-0.85449,-0.047762,157.88,0.74747,0.4239,0.51147,218.29,-0.41679,-0.30027,0.85798,195.99 |
| 15824 | | |
| 15825 | | > view matrix models |
| 15826 | | > #25,0.51727,-0.85449,-0.047762,210.94,0.74747,0.4239,0.51147,229.99,-0.41679,-0.30027,0.85798,239.89 |
| 15827 | | |
| 15828 | | > ui mousemode right "rotate selected models" |
| 15829 | | |
| 15830 | | > view matrix models |
| 15831 | | > #25,-0.70293,-0.50682,-0.49902,362.63,0.67229,-0.70249,-0.23353,464.3,-0.2322,-0.49964,0.83453,245.7 |
| 15832 | | |
| 15833 | | > view matrix models |
| 15834 | | > #25,-0.75868,-0.53578,-0.3706,356.61,0.62434,-0.76043,-0.17875,469.89,-0.18604,-0.36699,0.91143,215.23 |
| 15835 | | |
| 15836 | | > view matrix models |
| 15837 | | > #25,-0.93586,0.027592,-0.35128,307.05,-0.1268,-0.95652,0.26267,523.84,-0.32876,0.29036,0.89867,154.52 |
| 15838 | | |
| 15839 | | > view matrix models |
| 15840 | | > #25,-0.87849,0.30691,-0.36616,269.1,-0.42252,-0.85681,0.29556,541.29,-0.22302,0.41435,0.88237,129.8 |
| 15841 | | |
| 15842 | | > fitmap #25 inMap #13 |
| 15843 | | |
| 15844 | | Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage1_postprocess.mrc |
| 15845 | | using 65799 points |
| 15846 | | correlation = 0.8386, correlation about mean = 0.1168, overlap = 4248 |
| 15847 | | steps = 172, shift = 87.8, angle = 36.5 degrees |
| 15848 | | |
| 15849 | | Position of emd_3720_2017_leaf.map (#25) relative to |
| 15850 | | COPI_golph_linkage1_postprocess.mrc (#13) coordinates: |
| 15851 | | Matrix rotation and translation |
| 15852 | | -0.11325375 0.87368989 -0.47311689 161.39806956 |
| 15853 | | -0.91366114 -0.27867556 -0.29591094 320.66900746 |
| 15854 | | -0.39038051 0.39875549 0.82981754 144.68682489 |
| 15855 | | Axis 0.36192177 -0.04310572 -0.93121132 |
| 15856 | | Axis point 236.23873697 78.94197138 0.00000000 |
| 15857 | | Rotation angle (degrees) 106.32323310 |
| 15858 | | Shift along axis -90.14320499 |
| 15859 | | |
| 15860 | | |
| 15861 | | > view matrix models |
| 15862 | | > #25,-0.38909,-0.21141,-0.89661,405.72,-0.35776,-0.86223,0.35856,472.47,-0.84889,0.46029,0.25985,263.93 |
| 15863 | | |
| 15864 | | > view matrix models |
| 15865 | | > #25,-0.32538,-0.59232,-0.73708,424.36,0.85669,-0.51462,0.035371,333.63,-0.40026,-0.61994,0.67488,291.14 |
| 15866 | | |
| 15867 | | > ui mousemode right "translate selected models" |
| 15868 | | |
| 15869 | | > view matrix models |
| 15870 | | > #25,-0.32538,-0.59232,-0.73708,403.05,0.85669,-0.51462,0.035371,352.56,-0.40026,-0.61994,0.67488,325.57 |
| 15871 | | |
| 15872 | | > view matrix models |
| 15873 | | > #25,-0.32538,-0.59232,-0.73708,381.37,0.85669,-0.51462,0.035371,349.34,-0.40026,-0.61994,0.67488,303.9 |
| 15874 | | |
| 15875 | | > fitmap #25 inMap #13 |
| 15876 | | |
| 15877 | | Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage1_postprocess.mrc |
| 15878 | | using 65799 points |
| 15879 | | correlation = 0.933, correlation about mean = 0.1196, overlap = 5896 |
| 15880 | | steps = 116, shift = 38.2, angle = 15 degrees |
| 15881 | | |
| 15882 | | Position of emd_3720_2017_leaf.map (#25) relative to |
| 15883 | | COPI_golph_linkage1_postprocess.mrc (#13) coordinates: |
| 15884 | | Matrix rotation and translation |
| 15885 | | -0.94603206 -0.17522221 -0.27261797 295.24410684 |
| 15886 | | 0.28403044 -0.85336477 -0.43714450 266.44938693 |
| 15887 | | -0.15604514 -0.49098451 0.85707885 249.15658630 |
| 15888 | | Axis -0.11290390 -0.24445626 0.96306482 |
| 15889 | | Axis point 143.32181669 184.39107524 0.00000000 |
| 15890 | | Rotation angle (degrees) 166.20593340 |
| 15891 | | Shift along axis 141.48451210 |
| 15892 | | |
| 15893 | | |
| 15894 | | > hide #!13 models |
| 15895 | | |
| 15896 | | > show #!24 models |
| 15897 | | |
| 15898 | | > select subtract #25 |
| 15899 | | |
| 15900 | | Nothing selected |
| 15901 | | |
| 15902 | | > select add #24 |
| 15903 | | |
| 15904 | | 2 models selected |
| 15905 | | |
| 15906 | | > show #26 models |
| 15907 | | |
| 15908 | | > select add #26 |
| 15909 | | |
| 15910 | | 9810 atoms, 10032 bonds, 1233 residues, 3 models selected |
| 15911 | | |
| 15912 | | > show #27 models |
| 15913 | | |
| 15914 | | > select add #27 |
| 15915 | | |
| 15916 | | 17311 atoms, 17651 bonds, 2186 residues, 4 models selected |
| 15917 | | |
| 15918 | | > show #28 models |
| 15919 | | |
| 15920 | | > select add #28 |
| 15921 | | |
| 15922 | | 18768 atoms, 19134 bonds, 2367 residues, 5 models selected |
| 15923 | | |
| 15924 | | > show #29 models |
| 15925 | | |
| 15926 | | > select add #29 |
| 15927 | | |
| 15928 | | 20225 atoms, 20617 bonds, 2548 residues, 6 models selected |
| 15929 | | |
| 15930 | | > show #30 models |
| 15931 | | |
| 15932 | | > select add #30 |
| 15933 | | |
| 15934 | | 27439 atoms, 27990 bonds, 3453 residues, 7 models selected |
| 15935 | | |
| 15936 | | > hide #26 models |
| 15937 | | |
| 15938 | | > hide #27 models |
| 15939 | | |
| 15940 | | > hide #28 models |
| 15941 | | |
| 15942 | | > hide #29 models |
| 15943 | | |
| 15944 | | > hide #30 models |
| 15945 | | |
| 15946 | | > select add #31 |
| 15947 | | |
| 15948 | | 28901 atoms, 29471 bonds, 3632 residues, 8 models selected |
| 15949 | | |
| 15950 | | > select add #32 |
| 15951 | | |
| 15952 | | 35574 atoms, 36257 bonds, 1 pseudobond, 4485 residues, 10 models selected |
| 15953 | | |
| 15954 | | > select add #33 |
| 15955 | | |
| 15956 | | 36994 atoms, 37698 bonds, 1 pseudobond, 4662 residues, 11 models selected |
| 15957 | | |
| 15958 | | > select add #34 |
| 15959 | | |
| 15960 | | 39361 atoms, 40096 bonds, 1 pseudobond, 4960 residues, 12 models selected |
| 15961 | | |
| 15962 | | > select add #35 |
| 15963 | | |
| 15964 | | 40824 atoms, 41582 bonds, 1 pseudobond, 5145 residues, 13 models selected |
| 15965 | | |
| 15966 | | > view matrix models |
| 15967 | | > #24,-0.7967,0.19415,-0.57234,611.92,-0.38408,-0.89383,0.23142,805.74,-0.46664,0.4042,0.78668,83.809,#26,-0.54022,-0.4948,-0.68069,393.29,-0.24751,-0.67968,0.69049,580.14,-0.80431,0.54149,0.24471,295.18,#27,0.57144,0.72765,-0.37945,379.5,-0.15905,-0.35541,-0.92108,610.8,-0.80508,0.5867,-0.08736,272.84,#28,-0.66506,0.24155,-0.70665,447.77,0.71753,0.46898,-0.51499,619.1,0.20701,-0.84954,-0.48522,246.12,#29,0.44062,0.89381,0.083438,330.07,0.80654,-0.43497,0.40036,588.37,0.39414,-0.10911,-0.91255,223.14,#30,0.6918,-0.076025,0.71808,359.62,-0.15332,0.9563,0.24896,630,-0.70562,-0.28233,0.64991,255.24,#31,-0.59039,-0.5221,-0.61551,436,0.79157,-0.52353,-0.31518,856.4,-0.15768,-0.6733,0.72236,541.54,#32,0.10501,0.73958,0.66482,340.52,-0.83538,0.4283,-0.34452,527.48,-0.53955,-0.51921,0.66281,297.17,#33,-0.7264,0.63953,0.25168,350.26,0.49157,0.22754,0.84058,551.91,0.48031,0.73432,-0.47967,245.52,#34,-0.83035,0.52991,-0.1724,389.88,0.43123,0.41511,-0.80107,565.51,-0.35293,-0.73951,-0.5732,236.22,#35,0.51479,0.1408,0.84567,351.64,0.021873,-0.98826,0.15123,551.55,0.85704,-0.059354,-0.51183,245.47 |
| 15968 | | |
| 15969 | | > view matrix models |
| 15970 | | > #24,-0.7967,0.19415,-0.57234,552.53,-0.38408,-0.89383,0.23142,763.66,-0.46664,0.4042,0.78668,47.764,#26,-0.54022,-0.4948,-0.68069,333.9,-0.24751,-0.67968,0.69049,538.06,-0.80431,0.54149,0.24471,259.14,#27,0.57144,0.72765,-0.37945,320.11,-0.15905,-0.35541,-0.92108,568.72,-0.80508,0.5867,-0.08736,236.79,#28,-0.66506,0.24155,-0.70665,388.38,0.71753,0.46898,-0.51499,577.02,0.20701,-0.84954,-0.48522,210.07,#29,0.44062,0.89381,0.083438,270.68,0.80654,-0.43497,0.40036,546.29,0.39414,-0.10911,-0.91255,187.09,#30,0.6918,-0.076025,0.71808,300.23,-0.15332,0.9563,0.24896,587.92,-0.70562,-0.28233,0.64991,219.19,#31,-0.59039,-0.5221,-0.61551,376.61,0.79157,-0.52353,-0.31518,814.32,-0.15768,-0.6733,0.72236,505.5,#32,0.10501,0.73958,0.66482,281.14,-0.83538,0.4283,-0.34452,485.4,-0.53955,-0.51921,0.66281,261.13,#33,-0.7264,0.63953,0.25168,290.87,0.49157,0.22754,0.84058,509.83,0.48031,0.73432,-0.47967,209.48,#34,-0.83035,0.52991,-0.1724,330.5,0.43123,0.41511,-0.80107,523.43,-0.35293,-0.73951,-0.5732,200.18,#35,0.51479,0.1408,0.84567,292.25,0.021873,-0.98826,0.15123,509.47,0.85704,-0.059354,-0.51183,209.43 |
| 15971 | | |
| 15972 | | > ui mousemode right "rotate selected models" |
| 15973 | | |
| 15974 | | > view matrix models |
| 15975 | | > #24,0.064795,0.61102,-0.78896,326.29,-0.9979,0.039752,-0.051169,765.51,9.7563e-05,0.79062,0.61231,-95.601,#26,0.23127,0.036911,-0.97219,297.56,-0.88769,-0.40093,-0.22639,601.14,-0.39814,0.91536,-0.059957,244.3,#27,0.74139,0.40819,0.53266,276.32,0.066608,0.74506,-0.66367,590.1,-0.66776,0.52751,0.52519,211.79,#28,-0.96923,0.11498,0.21765,316.26,-0.22094,-0.016543,-0.97515,637.9,-0.10852,-0.99323,0.041439,172.24,#29,-0.53853,0.83537,0.11016,287.67,0.81153,0.5494,-0.19897,519.5,-0.22673,-0.017757,-0.9738,194.38,#30,0.75931,-0.64606,-0.077769,258.65,0.21258,0.13332,0.96801,572.24,-0.61503,-0.75155,0.23857,190.75,#31,-0.839,0.39576,-0.37344,11.998,-0.29495,-0.9075,-0.29909,838.24,-0.45726,-0.14079,0.87812,277.18,#32,0.90195,0.27047,0.33666,309.08,-0.43143,0.53,0.73005,540.43,0.019024,-0.80371,0.59472,286.04,#33,-0.94115,-0.13645,-0.30921,316.57,-0.22722,0.93272,0.27999,533.93,0.2502,0.33378,-0.90884,228.94,#34,-0.61301,0.26067,0.74583,330.63,-0.70183,0.25385,-0.66557,567.37,-0.36282,-0.93146,0.027329,206,#35,-0.095711,0.84175,0.53131,317.58,0.81403,-0.241,0.52846,534.94,0.57288,0.48308,-0.66215,228.83 |
| 15976 | | |
| 15977 | | > view matrix models |
| 15978 | | > #24,-0.079237,0.63095,-0.77176,349.82,-0.99628,-0.023895,0.082754,750.03,0.033772,0.77545,0.6305,-103.62,#26,0.090816,0.0029796,-0.99586,306.72,-0.92395,-0.37286,-0.085374,602.39,-0.37157,0.92788,-0.031108,242.38,#27,0.72546,0.5247,0.44542,283.27,-0.062369,0.69462,-0.71667,593.51,-0.68543,0.49214,0.53664,210.74,#28,-0.99343,0.085273,0.076335,328.6,-0.081952,-0.064437,-0.99455,633.76,-0.07989,-0.99427,0.071002,168.69,#29,-0.42215,0.90487,0.054804,283.9,0.87321,0.42213,-0.24354,521.49,-0.24351,-0.054957,-0.96834,195.59,#30,0.76554,-0.63974,0.068381,262.67,0.081081,0.20137,0.97615,577.73,-0.63825,-0.74175,0.20602,190.73,#31,-0.88439,0.25747,-0.38932,59.14,-0.18501,-0.95915,-0.21404,879.17,-0.42852,-0.11727,0.89589,273.03,#32,0.83081,0.32258,0.45355,310.49,-0.55636,0.45964,0.69223,542,0.01483,-0.82745,0.56135,285.98,#33,-0.95713,0.0077596,-0.28956,315.47,-0.080852,0.95275,0.29278,532.69,0.27815,0.30364,-0.91128,228.99,#34,-0.71679,0.26986,0.64295,333.58,-0.61707,0.1839,-0.76512,562.99,-0.32471,-0.94518,0.034702,204.59,#35,0.037299,0.81081,0.58412,316.61,0.83706,-0.34463,0.42493,533.53,0.54584,0.47309,-0.69155,228.82 |
| 15979 | | |
| 15980 | | > ui mousemode right "translate selected models" |
| 15981 | | |
| 15982 | | > view matrix models |
| 15983 | | > #24,-0.079237,0.63095,-0.77176,256.54,-0.99628,-0.023895,0.082754,608.43,0.033772,0.77545,0.6305,-54.049,#26,0.090816,0.0029796,-0.99586,213.44,-0.92395,-0.37286,-0.085374,460.79,-0.37157,0.92788,-0.031108,291.96,#27,0.72546,0.5247,0.44542,189.99,-0.062369,0.69462,-0.71667,451.9,-0.68543,0.49214,0.53664,260.32,#28,-0.99343,0.085273,0.076335,235.32,-0.081952,-0.064437,-0.99455,492.15,-0.07989,-0.99427,0.071002,218.26,#29,-0.42215,0.90487,0.054804,190.62,0.87321,0.42213,-0.24354,379.89,-0.24351,-0.054957,-0.96834,245.16,#30,0.76554,-0.63974,0.068381,169.39,0.081081,0.20137,0.97615,436.13,-0.63825,-0.74175,0.20602,240.3,#31,-0.88439,0.25747,-0.38932,-34.139,-0.18501,-0.95915,-0.21404,737.56,-0.42852,-0.11727,0.89589,322.6,#32,0.83081,0.32258,0.45355,217.21,-0.55636,0.45964,0.69223,400.4,0.01483,-0.82745,0.56135,335.55,#33,-0.95713,0.0077596,-0.28956,222.19,-0.080852,0.95275,0.29278,391.08,0.27815,0.30364,-0.91128,278.56,#34,-0.71679,0.26986,0.64295,240.3,-0.61707,0.1839,-0.76512,421.39,-0.32471,-0.94518,0.034702,254.16,#35,0.037299,0.81081,0.58412,223.33,0.83706,-0.34463,0.42493,391.93,0.54584,0.47309,-0.69155,278.4 |
| 15984 | | |
| 15985 | | > view matrix models |
| 15986 | | > #24,-0.079237,0.63095,-0.77176,248.91,-0.99628,-0.023895,0.082754,603.8,0.033772,0.77545,0.6305,-56.726,#26,0.090816,0.0029796,-0.99586,205.8,-0.92395,-0.37286,-0.085374,456.16,-0.37157,0.92788,-0.031108,289.28,#27,0.72546,0.5247,0.44542,182.36,-0.062369,0.69462,-0.71667,447.28,-0.68543,0.49214,0.53664,257.64,#28,-0.99343,0.085273,0.076335,227.69,-0.081952,-0.064437,-0.99455,487.53,-0.07989,-0.99427,0.071002,215.59,#29,-0.42215,0.90487,0.054804,182.98,0.87321,0.42213,-0.24354,375.26,-0.24351,-0.054957,-0.96834,242.48,#30,0.76554,-0.63974,0.068381,161.76,0.081081,0.20137,0.97615,431.5,-0.63825,-0.74175,0.20602,237.63,#31,-0.88439,0.25747,-0.38932,-41.776,-0.18501,-0.95915,-0.21404,732.94,-0.42852,-0.11727,0.89589,319.92,#32,0.83081,0.32258,0.45355,209.57,-0.55636,0.45964,0.69223,395.77,0.01483,-0.82745,0.56135,332.87,#33,-0.95713,0.0077596,-0.28956,214.55,-0.080852,0.95275,0.29278,386.46,0.27815,0.30364,-0.91128,275.88,#34,-0.71679,0.26986,0.64295,232.66,-0.61707,0.1839,-0.76512,416.76,-0.32471,-0.94518,0.034702,251.48,#35,0.037299,0.81081,0.58412,215.7,0.83706,-0.34463,0.42493,387.3,0.54584,0.47309,-0.69155,275.72 |
| 15987 | | |
| 15988 | | > view matrix models |
| 15989 | | > #24,-0.079237,0.63095,-0.77176,253.51,-0.99628,-0.023895,0.082754,609.19,0.033772,0.77545,0.6305,-55.25,#26,0.090816,0.0029796,-0.99586,210.41,-0.92395,-0.37286,-0.085374,461.54,-0.37157,0.92788,-0.031108,290.76,#27,0.72546,0.5247,0.44542,186.96,-0.062369,0.69462,-0.71667,452.66,-0.68543,0.49214,0.53664,259.12,#28,-0.99343,0.085273,0.076335,232.3,-0.081952,-0.064437,-0.99455,492.91,-0.07989,-0.99427,0.071002,217.06,#29,-0.42215,0.90487,0.054804,187.59,0.87321,0.42213,-0.24354,380.64,-0.24351,-0.054957,-0.96834,243.96,#30,0.76554,-0.63974,0.068381,166.37,0.081081,0.20137,0.97615,436.88,-0.63825,-0.74175,0.20602,239.1,#31,-0.88439,0.25747,-0.38932,-37.168,-0.18501,-0.95915,-0.21404,738.32,-0.42852,-0.11727,0.89589,321.4,#32,0.83081,0.32258,0.45355,214.18,-0.55636,0.45964,0.69223,401.16,0.01483,-0.82745,0.56135,334.35,#33,-0.95713,0.0077596,-0.28956,219.16,-0.080852,0.95275,0.29278,391.84,0.27815,0.30364,-0.91128,277.36,#34,-0.71679,0.26986,0.64295,237.27,-0.61707,0.1839,-0.76512,422.15,-0.32471,-0.94518,0.034702,252.96,#35,0.037299,0.81081,0.58412,220.3,0.83706,-0.34463,0.42493,392.68,0.54584,0.47309,-0.69155,277.2 |
| 15990 | | |
| 15991 | | > ui mousemode right "rotate selected models" |
| 15992 | | |
| 15993 | | > view matrix models |
| 15994 | | > #24,-0.15955,0.55814,-0.81426,294.69,-0.98245,-0.17053,0.075611,637.6,-0.096654,0.81203,0.57555,-22.917,#26,0.04986,-0.10598,-0.99312,210.58,-0.87816,-0.47832,0.0069562,454.62,-0.47576,0.87177,-0.11692,297.74,#27,0.77459,0.53317,0.34019,189.32,-0.044902,0.58289,-0.81131,451.63,-0.63086,0.61316,0.47545,263.55,#28,-0.98624,0.16513,-0.0080943,241.11,0.01587,0.04582,-0.99882,492.4,-0.16457,-0.98521,-0.04781,230.4,#29,-0.33004,0.93648,0.11863,185.61,0.92958,0.34429,-0.13171,382.12,-0.16419,0.066807,-0.98416,239.64,#30,0.82157,-0.55588,0.12657,169.35,0.087902,0.34288,0.93526,440.2,-0.56329,-0.75726,0.33056,240.23,#31,-0.85602,0.19076,-0.48045,-16.297,-0.054621,-0.95759,-0.2829,746.59,-0.51404,-0.21592,0.83014,343.75,#32,0.78037,0.42749,0.45637,205.86,-0.62526,0.52365,0.57865,389.43,0.00839,-0.73691,0.67594,333.63,#33,-0.98088,0.05614,-0.18635,214.97,-0.028398,0.90596,0.42241,386.48,0.19254,0.41963,-0.88704,276.47,#34,-0.73229,0.36368,0.57575,237.43,-0.50897,0.26941,-0.81753,417.74,-0.45243,-0.89172,-0.012189,257.48,#35,0.055605,0.73768,0.67286,216.19,0.7604,-0.46803,0.45027,387.24,0.64707,0.48661,-0.58695,276.5 |
| 15995 | | |
| 15996 | | > ui mousemode right "translate selected models" |
| 15997 | | |
| 15998 | | > view matrix models |
| 15999 | | > #24,-0.15955,0.55814,-0.81426,297.63,-0.98245,-0.17053,0.075611,637.24,-0.096654,0.81203,0.57555,-31.774,#26,0.04986,-0.10598,-0.99312,213.52,-0.87816,-0.47832,0.0069562,454.26,-0.47576,0.87177,-0.11692,288.88,#27,0.77459,0.53317,0.34019,192.26,-0.044902,0.58289,-0.81131,451.26,-0.63086,0.61316,0.47545,254.7,#28,-0.98624,0.16513,-0.0080943,244.05,0.01587,0.04582,-0.99882,492.03,-0.16457,-0.98521,-0.04781,221.54,#29,-0.33004,0.93648,0.11863,188.55,0.92958,0.34429,-0.13171,381.76,-0.16419,0.066807,-0.98416,230.78,#30,0.82157,-0.55588,0.12657,172.28,0.087902,0.34288,0.93526,439.83,-0.56329,-0.75726,0.33056,231.37,#31,-0.85602,0.19076,-0.48045,-13.363,-0.054621,-0.95759,-0.2829,746.23,-0.51404,-0.21592,0.83014,334.89,#32,0.78037,0.42749,0.45637,208.79,-0.62526,0.52365,0.57865,389.06,0.00839,-0.73691,0.67594,324.78,#33,-0.98088,0.05614,-0.18635,217.91,-0.028398,0.90596,0.42241,386.12,0.19254,0.41963,-0.88704,267.61,#34,-0.73229,0.36368,0.57575,240.36,-0.50897,0.26941,-0.81753,417.37,-0.45243,-0.89172,-0.012189,248.62,#35,0.055605,0.73768,0.67286,219.12,0.7604,-0.46803,0.45027,386.87,0.64707,0.48661,-0.58695,267.64 |
| 16000 | | |
| 16001 | | > ui mousemode right "rotate selected models" |
| 16002 | | |
| 16003 | | > view matrix models |
| 16004 | | > #24,-0.20627,0.605,-0.76904,288.7,-0.97387,-0.20327,0.10129,636.67,-0.095037,0.76984,0.63112,-35.182,#26,-0.019225,-0.065613,-0.99766,219.29,-0.87338,-0.4846,0.0487,453.21,-0.48666,0.87227,-0.047988,288.71,#27,0.72698,0.59761,0.33819,195.63,-0.068306,0.553,-0.83038,451.52,-0.68326,0.58056,0.44284,256.04,#28,-0.9937,0.098919,-0.052625,246.66,0.057928,0.051525,-0.99699,490.56,-0.09591,-0.99376,-0.05693,219.79,#29,-0.30182,0.95229,0.045299,187.42,0.9442,0.30516,-0.12397,382.52,-0.13188,0.0053536,-0.99125,231.76,#30,0.78393,-0.59187,0.18749,173.65,0.06162,0.37467,0.92511,441.2,-0.61779,-0.71366,0.33019,234.04,#31,-0.89079,0.13577,-0.43366,8.3596,-0.013365,-0.96174,-0.27364,753.54,-0.45422,-0.23796,0.85852,353.13,#32,0.7526,0.39721,0.52518,214.35,-0.65645,0.51515,0.55109,387.82,-0.05165,-0.7595,0.64845,324.2,#33,-0.9657,0.12218,-0.22914,219.39,0.0089735,0.89757,0.44079,385.23,0.25952,0.42361,-0.86787,266.52,#34,-0.78201,0.31248,0.53928,241.76,-0.4731,0.26569,-0.83999,415.78,-0.40576,-0.91201,-0.059934,246.33,#35,0.13124,0.74934,0.64905,220.64,0.74929,-0.50366,0.42999,385.93,0.64911,0.42989,-0.62757,266.47 |
| 16005 | | |
| 16006 | | > ui mousemode right "translate selected models" |
| 16007 | | |
| 16008 | | > view matrix models |
| 16009 | | > #24,-0.20627,0.605,-0.76904,281.39,-0.97387,-0.20327,0.10129,639.75,-0.095037,0.76984,0.63112,-43.426,#26,-0.019225,-0.065613,-0.99766,211.99,-0.87338,-0.4846,0.0487,456.3,-0.48666,0.87227,-0.047988,280.46,#27,0.72698,0.59761,0.33819,188.33,-0.068306,0.553,-0.83038,454.6,-0.68326,0.58056,0.44284,247.8,#28,-0.9937,0.098919,-0.052625,239.36,0.057928,0.051525,-0.99699,493.65,-0.09591,-0.99376,-0.05693,211.55,#29,-0.30182,0.95229,0.045299,180.12,0.9442,0.30516,-0.12397,385.61,-0.13188,0.0053536,-0.99125,223.52,#30,0.78393,-0.59187,0.18749,166.34,0.06162,0.37467,0.92511,444.28,-0.61779,-0.71366,0.33019,225.8,#31,-0.89079,0.13577,-0.43366,1.0575,-0.013365,-0.96174,-0.27364,756.63,-0.45422,-0.23796,0.85852,344.89,#32,0.7526,0.39721,0.52518,207.04,-0.65645,0.51515,0.55109,390.9,-0.05165,-0.7595,0.64845,315.95,#33,-0.9657,0.12218,-0.22914,212.09,0.0089735,0.89757,0.44079,388.31,0.25952,0.42361,-0.86787,258.28,#34,-0.78201,0.31248,0.53928,234.46,-0.4731,0.26569,-0.83999,418.87,-0.40576,-0.91201,-0.059934,238.08,#35,0.13124,0.74934,0.64905,213.33,0.74929,-0.50366,0.42999,389.02,0.64911,0.42989,-0.62757,258.23 |
| 16010 | | |
| 16011 | | > ui mousemode right "rotate selected models" |
| 16012 | | |
| 16013 | | > view matrix models |
| 16014 | | > #24,-0.23797,0.61098,-0.75503,284.1,-0.964,-0.24351,0.10678,644.68,-0.11862,0.75326,0.64694,-38.254,#26,-0.054368,-0.066273,-0.99632,214.37,-0.85818,-0.50699,0.080554,454.29,-0.51047,0.8594,-0.02931,281.54,#27,0.71316,0.62398,0.31946,190.13,-0.071046,0.51771,-0.8526,454.25,-0.6974,0.58534,0.41354,249.25,#28,-0.99287,0.084099,-0.084515,241.75,0.091016,0.076736,-0.99289,492.73,-0.077016,-0.9935,-0.083843,213.23,#29,-0.27446,0.96127,0.0251,179.38,0.95636,0.2756,-0.097036,386.26,-0.1002,-0.0026286,-0.99496,223.2,#30,0.77519,-0.5916,0.22156,167.48,0.05516,0.41277,0.90916,445.23,-0.62932,-0.69255,0.35261,227.36,#31,-0.89813,0.10188,-0.42776,13.962,0.026834,-0.95828,-0.28457,758.97,-0.4389,-0.26706,0.85793,357.98,#32,0.73089,0.40047,0.55266,207.98,-0.67743,0.52416,0.51608,388.09,-0.083007,-0.75158,0.6544,315.27,#33,-0.96055,0.15698,-0.22958,211.99,0.031131,0.88099,0.47212,386.99,0.27637,0.44634,-0.85112,257.46,#34,-0.80291,0.30553,0.51185,234.97,-0.43721,0.28185,-0.85405,417.41,-0.4052,-0.90951,-0.092718,237.75,#35,0.16513,0.7403,0.65168,213.26,0.72614,-0.53839,0.42762,387.65,0.66742,0.4026,-0.62647,257.41 |
| 16015 | | |
| 16016 | | > view matrix models |
| 16017 | | > #24,-0.25271,0.58987,-0.76694,294.1,-0.96085,-0.24606,0.12735,640.19,-0.11359,0.7691,0.62896,-38.801,#26,-0.058701,-0.094196,-0.99382,213.96,-0.86265,-0.49623,0.097986,454.61,-0.50239,0.86307,-0.052129,281.38,#27,0.72683,0.62029,0.29488,190.44,-0.09144,0.51291,-0.85356,454.65,-0.6807,0.59343,0.42952,248.57,#28,-0.98914,0.10717,-0.1006,243.52,0.10786,0.064268,-0.99209,491.81,-0.099856,-0.99216,-0.07513,213.29,#29,-0.25488,0.96592,0.045084,179.04,0.95994,0.25836,-0.10843,386.58,-0.11638,0.015642,-0.99308,223.01,#30,0.78963,-0.56877,0.2302,168.12,0.034382,0.4156,0.9089,445.8,-0.61262,-0.70978,0.34772,226.28,#31,-0.88769,0.090349,-0.45148,17.477,0.038012,-0.96283,-0.26742,763.65,-0.45886,-0.25455,0.85126,350.14,#32,0.72016,0.42621,0.54746,205.64,-0.69124,0.50862,0.51332,388.92,-0.059665,-0.7481,0.6609,315.66,#33,-0.96564,0.16308,-0.20235,210.9,0.051306,0.88291,0.46673,387.11,0.25477,0.44031,-0.86094,257.97,#34,-0.80163,0.33038,0.49824,234.85,-0.42726,0.26631,-0.86402,416.89,-0.41814,-0.9055,-0.072326,238.45,#35,0.1636,0.72147,0.67284,212.18,0.73039,-0.54704,0.40899,387.75,0.66315,0.42453,-0.61645,257.94 |
| 16018 | | |
| 16019 | | > surface dust #24 size 25.5 |
| 16020 | | |
| 16021 | | > volume #24 level 0.003298 |
| 16022 | | |
| 16023 | | > view matrix models |
| 16024 | | > #24,-0.42622,0.5442,-0.72263,332.63,-0.89756,-0.35402,0.26279,617.26,-0.11281,0.7606,0.63934,-39.592,#26,-0.22234,-0.17294,-0.95951,223.78,-0.83467,-0.47485,0.279,447.94,-0.50388,0.86291,-0.038775,281.12,#27,0.68915,0.71126,0.13848,200.26,-0.21986,0.38735,-0.89533,452.45,-0.69046,0.58657,0.42332,248.62,#28,-0.95369,0.10478,-0.28196,258.81,0.28808,0.048508,-0.95638,479.41,-0.086532,-0.99331,-0.076447,212.74,#29,-0.075729,0.99706,0.012037,176.23,0.99099,0.076595,-0.10985,387.76,-0.11045,0.0036097,-0.99387,223.03,#30,0.77483,-0.49159,0.39747,176.41,-0.10805,0.51651,0.84944,447.97,-0.62287,-0.70111,0.34709,226.6,#31,-0.87127,-0.091137,-0.48227,88.242,0.20261,-0.96176,-0.18429,787.43,-0.44703,-0.25828,0.85642,353.28,#32,0.58021,0.503,0.64059,203.97,-0.81137,0.42551,0.40077,384.71,-0.070989,-0.75228,0.655,315.33,#33,-0.93655,0.32788,-0.12393,208.08,0.22639,0.83575,0.50027,382.26,0.26761,0.44048,-0.85695,257.58,#34,-0.87159,0.36235,0.3302,236.84,-0.27075,0.20571,-0.94041,407.24,-0.40869,-0.90906,-0.081188,237.82,#35,0.30316,0.61401,0.72876,209.45,0.6846,-0.67231,0.28165,382.65,0.66288,0.41352,-0.62417,257.53 |
| 16025 | | |
| 16026 | | > view matrix models |
| 16027 | | > #24,-0.44369,0.54391,-0.71225,334.35,-0.88683,-0.38099,0.2615,620.47,-0.12913,0.74767,0.6514,-36.004,#26,-0.24197,-0.17446,-0.95447,225.07,-0.81888,-0.49094,0.29734,445.97,-0.52046,0.85354,-0.024072,281.78,#27,0.67915,0.72321,0.12542,201.37,-0.21682,0.36092,-0.90704,451.65,-0.70125,0.58882,0.40193,249.6,#28,-0.94888,0.097328,-0.30025,260.11,0.30739,0.068968,-0.94908,478.34,-0.071664,-0.99286,-0.09536,213.82,#29,-0.058289,0.9983,0.0016662,175.93,0.99445,0.058211,-0.087614,388.01,-0.087562,-0.0034501,-0.99615,222.78,#30,0.76744,-0.4878,0.41603,177.26,-0.10815,0.54111,0.83397,448.1,-0.63193,-0.68502,0.36251,227.7,#31,-0.87109,-0.11109,-0.4784,96.455,0.22857,-0.95386,-0.19469,786.18,-0.4347,-0.27894,0.85629,362.72,#32,0.56447,0.50447,0.65337,204.38,-0.82006,0.43308,0.3741,382.36,-0.094243,-0.74696,0.65815,314.75,#33,-0.92993,0.34698,-0.12183,207.96,0.23742,0.81945,0.52166,381.14,0.28084,0.45618,-0.84441,256.91,#34,-0.87985,0.35846,0.31203,237.02,-0.24545,0.21948,-0.94424,406.03,-0.40696,-0.90738,-0.10513,237.46,#35,0.32133,0.6049,0.72859,209.34,0.66381,-0.6926,0.28225,381.51,0.67535,0.39295,-0.62409,256.86 |
| 16028 | | |
| 16029 | | > ui mousemode right "translate selected models" |
| 16030 | | |
| 16031 | | > view matrix models |
| 16032 | | > #24,-0.44369,0.54391,-0.71225,331.18,-0.88683,-0.38099,0.2615,619.06,-0.12913,0.74767,0.6514,-31.499,#26,-0.24197,-0.17446,-0.95447,221.91,-0.81888,-0.49094,0.29734,444.56,-0.52046,0.85354,-0.024072,286.28,#27,0.67915,0.72321,0.12542,198.2,-0.21682,0.36092,-0.90704,450.24,-0.70125,0.58882,0.40193,254.11,#28,-0.94888,0.097328,-0.30025,256.94,0.30739,0.068968,-0.94908,476.93,-0.071664,-0.99286,-0.09536,218.33,#29,-0.058289,0.9983,0.0016662,172.77,0.99445,0.058211,-0.087614,386.6,-0.087562,-0.0034501,-0.99615,227.29,#30,0.76744,-0.4878,0.41603,174.09,-0.10815,0.54111,0.83397,446.69,-0.63193,-0.68502,0.36251,232.2,#31,-0.87109,-0.11109,-0.4784,93.29,0.22857,-0.95386,-0.19469,784.78,-0.4347,-0.27894,0.85629,367.22,#32,0.56447,0.50447,0.65337,201.22,-0.82006,0.43308,0.3741,380.95,-0.094243,-0.74696,0.65815,319.25,#33,-0.92993,0.34698,-0.12183,204.8,0.23742,0.81945,0.52166,379.73,0.28084,0.45618,-0.84441,261.42,#34,-0.87985,0.35846,0.31203,233.85,-0.24545,0.21948,-0.94424,404.62,-0.40696,-0.90738,-0.10513,241.97,#35,0.32133,0.6049,0.72859,206.18,0.66381,-0.6926,0.28225,380.1,0.67535,0.39295,-0.62409,261.37 |
| 16033 | | |
| 16034 | | > view matrix models |
| 16035 | | > #24,-0.44369,0.54391,-0.71225,328.37,-0.88683,-0.38099,0.2615,618.57,-0.12913,0.74767,0.6514,-33.493,#26,-0.24197,-0.17446,-0.95447,219.1,-0.81888,-0.49094,0.29734,444.08,-0.52046,0.85354,-0.024072,284.29,#27,0.67915,0.72321,0.12542,195.39,-0.21682,0.36092,-0.90704,449.76,-0.70125,0.58882,0.40193,252.11,#28,-0.94888,0.097328,-0.30025,254.13,0.30739,0.068968,-0.94908,476.44,-0.071664,-0.99286,-0.09536,216.33,#29,-0.058289,0.9983,0.0016662,169.96,0.99445,0.058211,-0.087614,386.11,-0.087562,-0.0034501,-0.99615,225.3,#30,0.76744,-0.4878,0.41603,171.28,-0.10815,0.54111,0.83397,446.2,-0.63193,-0.68502,0.36251,230.21,#31,-0.87109,-0.11109,-0.4784,90.478,0.22857,-0.95386,-0.19469,784.29,-0.4347,-0.27894,0.85629,365.23,#32,0.56447,0.50447,0.65337,198.4,-0.82006,0.43308,0.3741,380.47,-0.094243,-0.74696,0.65815,317.26,#33,-0.92993,0.34698,-0.12183,201.99,0.23742,0.81945,0.52166,379.24,0.28084,0.45618,-0.84441,259.42,#34,-0.87985,0.35846,0.31203,231.04,-0.24545,0.21948,-0.94424,404.13,-0.40696,-0.90738,-0.10513,239.97,#35,0.32133,0.6049,0.72859,203.37,0.66381,-0.6926,0.28225,379.62,0.67535,0.39295,-0.62409,259.37 |
| 16036 | | |
| 16037 | | > select subtract #35 |
| 16038 | | |
| 16039 | | 39361 atoms, 40096 bonds, 1 pseudobond, 4960 residues, 12 models selected |
| 16040 | | |
| 16041 | | > select subtract #34 |
| 16042 | | |
| 16043 | | 36994 atoms, 37698 bonds, 1 pseudobond, 4662 residues, 11 models selected |
| 16044 | | |
| 16045 | | > select subtract #33 |
| 16046 | | |
| 16047 | | 35574 atoms, 36257 bonds, 1 pseudobond, 4485 residues, 10 models selected |
| 16048 | | |
| 16049 | | > select subtract #32 |
| 16050 | | |
| 16051 | | 28901 atoms, 29471 bonds, 3632 residues, 8 models selected |
| 16052 | | |
| 16053 | | > select subtract #31 |
| 16054 | | |
| 16055 | | 27439 atoms, 27990 bonds, 3453 residues, 7 models selected |
| 16056 | | |
| 16057 | | > select subtract #30 |
| 16058 | | |
| 16059 | | 20225 atoms, 20617 bonds, 2548 residues, 6 models selected |
| 16060 | | |
| 16061 | | > select subtract #29 |
| 16062 | | |
| 16063 | | 18768 atoms, 19134 bonds, 2367 residues, 5 models selected |
| 16064 | | |
| 16065 | | > select subtract #28 |
| 16066 | | |
| 16067 | | 17311 atoms, 17651 bonds, 2186 residues, 4 models selected |
| 16068 | | |
| 16069 | | > select subtract #27 |
| 16070 | | |
| 16071 | | 9810 atoms, 10032 bonds, 1233 residues, 3 models selected |
| 16072 | | |
| 16073 | | > select subtract #26 |
| 16074 | | |
| 16075 | | 2 models selected |
| 16076 | | |
| 16077 | | > select subtract #24 |
| 16078 | | |
| 16079 | | Nothing selected |
| 16080 | | |
| 16081 | | > hide #!25 models |
| 16082 | | |
| 16083 | | > show #!25 models |
| 16084 | | |
| 16085 | | > show #!13 models |
| 16086 | | |
| 16087 | | > hide #!25 models |
| 16088 | | |
| 16089 | | > show #!25 models |
| 16090 | | |
| 16091 | | > hide #!25 models |
| 16092 | | |
| 16093 | | > show #!25 models |
| 16094 | | |
| 16095 | | > hide #!25 models |
| 16096 | | |
| 16097 | | > fitmap #24 inMap #13 |
| 16098 | | |
| 16099 | | Fit map postprocess_20231221.mrc in map COPI_golph_linkage1_postprocess.mrc |
| 16100 | | using 28339 points |
| 16101 | | correlation = 0.8323, correlation about mean = 0.2096, overlap = 68.68 |
| 16102 | | steps = 112, shift = 2.95, angle = 9.66 degrees |
| 16103 | | |
| 16104 | | Position of postprocess_20231221.mrc (#24) relative to |
| 16105 | | COPI_golph_linkage1_postprocess.mrc (#13) coordinates: |
| 16106 | | Matrix rotation and translation |
| 16107 | | 0.36066969 0.89499066 -0.26250545 -65.24306892 |
| 16108 | | -0.85377429 0.20350072 -0.47922534 385.94731508 |
| 16109 | | -0.37548216 0.39696246 0.83751655 73.99878724 |
| 16110 | | Axis 0.44720647 0.05766334 -0.89257006 |
| 16111 | | Axis point 253.82839871 217.75653073 0.00000000 |
| 16112 | | Rotation angle (degrees) 78.41371225 |
| 16113 | | Shift along axis -72.97121361 |
| 16114 | | |
| 16115 | | |
| 16116 | | > hide #!13 models |
| 16117 | | |
| 16118 | | > show #26 models |
| 16119 | | |
| 16120 | | > fitmap #26 inMap #24 |
| 16121 | | |
| 16122 | | Fit molecule copy of CopA_F8WHL2.pdb (#26) to map postprocess_20231221.mrc |
| 16123 | | (#24) using 9810 atoms |
| 16124 | | average map value = 0.002311, steps = 200 |
| 16125 | | shifted from previous position = 33.3 |
| 16126 | | rotated from previous position = 39.3 degrees |
| 16127 | | atoms outside contour = 8189, contour level = 0.0032978 |
| 16128 | | |
| 16129 | | Position of copy of CopA_F8WHL2.pdb (#26) relative to postprocess_20231221.mrc |
| 16130 | | (#24) coordinates: |
| 16131 | | Matrix rotation and translation |
| 16132 | | 0.48919129 0.86758904 -0.08933718 173.66417465 |
| 16133 | | -0.80858149 0.41274017 -0.41933461 228.33852434 |
| 16134 | | -0.32693707 0.27737122 0.90342534 208.22971501 |
| 16135 | | Axis 0.38057152 0.12978756 -0.91559844 |
| 16136 | | Axis point 331.49964154 -46.63271772 0.00000000 |
| 16137 | | Rotation angle (degrees) 66.25427443 |
| 16138 | | Shift along axis -94.92766211 |
| 16139 | | |
| 16140 | | |
| 16141 | | > ui mousemode right zoom |
| 16142 | | |
| 16143 | | > select add #26 |
| 16144 | | |
| 16145 | | 9810 atoms, 10032 bonds, 1233 residues, 1 model selected |
| 16146 | | |
| 16147 | | > ui mousemode right "translate selected models" |
| 16148 | | |
| 16149 | | > view matrix models |
| 16150 | | > #26,-0.24197,-0.17446,-0.95447,216.08,-0.81888,-0.49094,0.29734,444.7,-0.52046,0.85354,-0.024072,295.63 |
| 16151 | | |
| 16152 | | > fitmap #26 inMap #24 |
| 16153 | | |
| 16154 | | Fit molecule copy of CopA_F8WHL2.pdb (#26) to map postprocess_20231221.mrc |
| 16155 | | (#24) using 9810 atoms |
| 16156 | | average map value = 0.002292, steps = 176 |
| 16157 | | shifted from previous position = 37.9 |
| 16158 | | rotated from previous position = 36.6 degrees |
| 16159 | | atoms outside contour = 8069, contour level = 0.0032978 |
| 16160 | | |
| 16161 | | Position of copy of CopA_F8WHL2.pdb (#26) relative to postprocess_20231221.mrc |
| 16162 | | (#24) coordinates: |
| 16163 | | Matrix rotation and translation |
| 16164 | | 0.52204018 0.84544209 0.11270182 168.13915738 |
| 16165 | | -0.70595342 0.50245145 -0.49917162 232.28140646 |
| 16166 | | -0.47864789 0.18102540 0.85914258 210.96232275 |
| 16167 | | Axis 0.37910664 0.32958775 -0.86466761 |
| 16168 | | Axis point 359.09123453 -14.75335760 -0.00000000 |
| 16169 | | Rotation angle (degrees) 63.78012245 |
| 16170 | | Shift along axis -42.11251195 |
| 16171 | | |
| 16172 | | |
| 16173 | | > show #27 models |
| 16174 | | |
| 16175 | | > select subtract #26 |
| 16176 | | |
| 16177 | | Nothing selected |
| 16178 | | |
| 16179 | | > select add #27 |
| 16180 | | |
| 16181 | | 7501 atoms, 7619 bonds, 953 residues, 1 model selected |
| 16182 | | |
| 16183 | | > view matrix models |
| 16184 | | > #27,0.67915,0.72321,0.12542,188.54,-0.21682,0.36092,-0.90704,442.68,-0.70125,0.58882,0.40193,246.42 |
| 16185 | | |
| 16186 | | > fitmap #26 inMap #24 |
| 16187 | | |
| 16188 | | Fit molecule copy of CopA_F8WHL2.pdb (#26) to map postprocess_20231221.mrc |
| 16189 | | (#24) using 9810 atoms |
| 16190 | | average map value = 0.002292, steps = 176 |
| 16191 | | shifted from previous position = 37.9 |
| 16192 | | rotated from previous position = 36.6 degrees |
| 16193 | | atoms outside contour = 8069, contour level = 0.0032978 |
| 16194 | | |
| 16195 | | Position of copy of CopA_F8WHL2.pdb (#26) relative to postprocess_20231221.mrc |
| 16196 | | (#24) coordinates: |
| 16197 | | Matrix rotation and translation |
| 16198 | | 0.52204018 0.84544209 0.11270182 168.13915738 |
| 16199 | | -0.70595342 0.50245145 -0.49917162 232.28140646 |
| 16200 | | -0.47864789 0.18102540 0.85914258 210.96232275 |
| 16201 | | Axis 0.37910664 0.32958775 -0.86466761 |
| 16202 | | Axis point 359.09123453 -14.75335760 0.00000000 |
| 16203 | | Rotation angle (degrees) 63.78012245 |
| 16204 | | Shift along axis -42.11251195 |
| 16205 | | |
| 16206 | | |
| 16207 | | > fitmap #27 inMap #24 |
| 16208 | | |
| 16209 | | Fit molecule copy of CopB_Q9JIF7.pdb (#27) to map postprocess_20231221.mrc |
| 16210 | | (#24) using 7501 atoms |
| 16211 | | average map value = 0.002632, steps = 80 |
| 16212 | | shifted from previous position = 7.07 |
| 16213 | | rotated from previous position = 8.79 degrees |
| 16214 | | atoms outside contour = 5370, contour level = 0.0032978 |
| 16215 | | |
| 16216 | | Position of copy of CopB_Q9JIF7.pdb (#27) relative to postprocess_20231221.mrc |
| 16217 | | (#24) coordinates: |
| 16218 | | Matrix rotation and translation |
| 16219 | | 0.05510091 -0.66182875 0.74762731 172.62310921 |
| 16220 | | -0.01234173 0.74825620 0.66329506 209.73384589 |
| 16221 | | -0.99840451 -0.04577518 0.03306149 233.19971501 |
| 16222 | | Axis -0.35572697 0.87595076 0.32583521 |
| 16223 | | Axis point 217.55626143 0.00000000 -50.28320725 |
| 16224 | | Rotation angle (degrees) 94.69150286 |
| 16225 | | Shift along axis 198.29450426 |
| 16226 | | |
| 16227 | | |
| 16228 | | > select subtract #27 |
| 16229 | | |
| 16230 | | Nothing selected |
| 16231 | | |
| 16232 | | > hide #26 models |
| 16233 | | |
| 16234 | | > show #26 models |
| 16235 | | |
| 16236 | | > show #28 models |
| 16237 | | |
| 16238 | | > fitmap #28 inMap #24 |
| 16239 | | |
| 16240 | | Fit molecule copy of hArf1_P84078 (#28) to map postprocess_20231221.mrc (#24) |
| 16241 | | using 1457 atoms |
| 16242 | | average map value = 0.002587, steps = 88 |
| 16243 | | shifted from previous position = 12.8 |
| 16244 | | rotated from previous position = 9.62 degrees |
| 16245 | | atoms outside contour = 1280, contour level = 0.0032978 |
| 16246 | | |
| 16247 | | Position of copy of hArf1_P84078 (#28) relative to postprocess_20231221.mrc |
| 16248 | | (#24) coordinates: |
| 16249 | | Matrix rotation and translation |
| 16250 | | 0.15689372 0.02394020 0.98732528 126.73150289 |
| 16251 | | -0.68693840 -0.71561887 0.12651188 200.57796539 |
| 16252 | | 0.70957733 -0.69808057 -0.09583067 178.39248618 |
| 16253 | | Axis -0.73389363 0.24719782 -0.63268742 |
| 16254 | | Axis point 0.00000000 138.28668246 -15.53757163 |
| 16255 | | Rotation angle (degrees) 145.82012059 |
| 16256 | | Shift along axis -156.29169001 |
| 16257 | | |
| 16258 | | |
| 16259 | | > hide #28 models |
| 16260 | | |
| 16261 | | > show #29 models |
| 16262 | | |
| 16263 | | > fitmap #28 inMap #24 |
| 16264 | | |
| 16265 | | Fit molecule copy of hArf1_P84078 (#28) to map postprocess_20231221.mrc (#24) |
| 16266 | | using 1457 atoms |
| 16267 | | average map value = 0.002587, steps = 44 |
| 16268 | | shifted from previous position = 0.00728 |
| 16269 | | rotated from previous position = 0.0538 degrees |
| 16270 | | atoms outside contour = 1280, contour level = 0.0032978 |
| 16271 | | |
| 16272 | | Position of copy of hArf1_P84078 (#28) relative to postprocess_20231221.mrc |
| 16273 | | (#24) coordinates: |
| 16274 | | Matrix rotation and translation |
| 16275 | | 0.15769401 0.02392714 0.98719810 126.73595070 |
| 16276 | | -0.68651507 -0.71593579 0.12701565 200.57436049 |
| 16277 | | 0.70980958 -0.69775599 -0.09647245 178.39967908 |
| 16278 | | Axis -0.73420556 0.24692919 -0.63243036 |
| 16279 | | Axis point 0.00000000 138.24458997 -15.45000257 |
| 16280 | | Rotation angle (degrees) 145.82819979 |
| 16281 | | Shift along axis -156.34794935 |
| 16282 | | |
| 16283 | | |
| 16284 | | > fitmap #28 inMap #24 |
| 16285 | | |
| 16286 | | Fit molecule copy of hArf1_P84078 (#28) to map postprocess_20231221.mrc (#24) |
| 16287 | | using 1457 atoms |
| 16288 | | average map value = 0.002588, steps = 44 |
| 16289 | | shifted from previous position = 0.0446 |
| 16290 | | rotated from previous position = 0.0231 degrees |
| 16291 | | atoms outside contour = 1281, contour level = 0.0032978 |
| 16292 | | |
| 16293 | | Position of copy of hArf1_P84078 (#28) relative to postprocess_20231221.mrc |
| 16294 | | (#24) coordinates: |
| 16295 | | Matrix rotation and translation |
| 16296 | | 0.15760567 0.02370579 0.98721754 126.69653215 |
| 16297 | | -0.68678014 -0.71571476 0.12682820 200.56618010 |
| 16298 | | 0.70957274 -0.69799026 -0.09652004 178.41867472 |
| 16299 | | Axis -0.73416533 0.24712976 -0.63239872 |
| 16300 | | Axis point 0.00000000 138.26923718 -15.43472773 |
| 16301 | | Rotation angle (degrees) 145.82385973 |
| 16302 | | Shift along axis -156.28207120 |
| 16303 | | |
| 16304 | | |
| 16305 | | > fitmap #28 inMap #24 |
| 16306 | | |
| 16307 | | Fit molecule copy of hArf1_P84078 (#28) to map postprocess_20231221.mrc (#24) |
| 16308 | | using 1457 atoms |
| 16309 | | average map value = 0.002588, steps = 44 |
| 16310 | | shifted from previous position = 0.0351 |
| 16311 | | rotated from previous position = 0.0173 degrees |
| 16312 | | atoms outside contour = 1279, contour level = 0.0032978 |
| 16313 | | |
| 16314 | | Position of copy of hArf1_P84078 (#28) relative to postprocess_20231221.mrc |
| 16315 | | (#24) coordinates: |
| 16316 | | Matrix rotation and translation |
| 16317 | | 0.15786530 0.02378436 0.98717417 126.72606327 |
| 16318 | | -0.68665422 -0.71579568 0.12705318 200.57530670 |
| 16319 | | 0.70963689 -0.69790460 -0.09666767 178.40234647 |
| 16320 | | Axis -0.73425942 0.24702399 -0.63233081 |
| 16321 | | Axis point 0.00000000 138.26041196 -15.43881299 |
| 16322 | | Rotation angle (degrees) 145.82227451 |
| 16323 | | Shift along axis -156.31219278 |
| 16324 | | |
| 16325 | | |
| 16326 | | > hide #29 models |
| 16327 | | |
| 16328 | | > show #30 models |
| 16329 | | |
| 16330 | | > fitmap #29 inMap #24 |
| 16331 | | |
| 16332 | | Fit molecule copy of hArf1_P84078 (#29) to map postprocess_20231221.mrc (#24) |
| 16333 | | using 1457 atoms |
| 16334 | | average map value = 0.003766, steps = 88 |
| 16335 | | shifted from previous position = 4.36 |
| 16336 | | rotated from previous position = 9.68 degrees |
| 16337 | | atoms outside contour = 619, contour level = 0.0032978 |
| 16338 | | |
| 16339 | | Position of copy of hArf1_P84078 (#29) relative to postprocess_20231221.mrc |
| 16340 | | (#24) coordinates: |
| 16341 | | Matrix rotation and translation |
| 16342 | | -0.84461901 -0.49418276 0.20591772 243.00983013 |
| 16343 | | -0.47653853 0.51868237 -0.70984478 195.93867822 |
| 16344 | | 0.24398717 -0.69767613 -0.67358612 220.56719229 |
| 16345 | | Axis 0.27853266 -0.87138535 0.40386523 |
| 16346 | | Axis point 151.40232781 0.00000000 157.23746430 |
| 16347 | | Rotation angle (degrees) 178.74831937 |
| 16348 | | Shift along axis -13.97250052 |
| 16349 | | |
| 16350 | | |
| 16351 | | > show #29 models |
| 16352 | | |
| 16353 | | > hide #29 models |
| 16354 | | |
| 16355 | | > fitmap #30 inMap #24 |
| 16356 | | |
| 16357 | | Fit molecule copy of CopBprime_O55029.pdb (#30) to map |
| 16358 | | postprocess_20231221.mrc (#24) using 7214 atoms |
| 16359 | | average map value = 0.00312, steps = 76 |
| 16360 | | shifted from previous position = 10.5 |
| 16361 | | rotated from previous position = 9.7 degrees |
| 16362 | | atoms outside contour = 3971, contour level = 0.0032978 |
| 16363 | | |
| 16364 | | Position of copy of CopBprime_O55029.pdb (#30) relative to |
| 16365 | | postprocess_20231221.mrc (#24) coordinates: |
| 16366 | | Matrix rotation and translation |
| 16367 | | -0.16363982 -0.17476461 -0.97091675 188.45128193 |
| 16368 | | -0.01368357 -0.98368662 0.17936944 177.45916348 |
| 16369 | | -0.98642525 0.04263759 0.15857889 238.55628903 |
| 16370 | | Axis -0.64539813 0.07320281 0.76033059 |
| 16371 | | Axis point 189.46127810 85.46785517 0.00000000 |
| 16372 | | Rotation angle (degrees) 173.91934795 |
| 16373 | | Shift along axis 72.74604733 |
| 16374 | | |
| 16375 | | |
| 16376 | | > hide #30 models |
| 16377 | | |
| 16378 | | > show #31 models |
| 16379 | | |
| 16380 | | > fitmap #30 inMap #24 |
| 16381 | | |
| 16382 | | Fit molecule copy of CopBprime_O55029.pdb (#30) to map |
| 16383 | | postprocess_20231221.mrc (#24) using 7214 atoms |
| 16384 | | average map value = 0.00312, steps = 28 |
| 16385 | | shifted from previous position = 0.0174 |
| 16386 | | rotated from previous position = 0.041 degrees |
| 16387 | | atoms outside contour = 3970, contour level = 0.0032978 |
| 16388 | | |
| 16389 | | Position of copy of CopBprime_O55029.pdb (#30) relative to |
| 16390 | | postprocess_20231221.mrc (#24) coordinates: |
| 16391 | | Matrix rotation and translation |
| 16392 | | -0.16311521 -0.17470792 -0.97101522 188.46021007 |
| 16393 | | -0.01416285 -0.98368049 0.17936583 177.45082967 |
| 16394 | | -0.98650537 0.04300963 0.15797888 238.54740741 |
| 16395 | | Axis -0.64560973 0.07334164 0.76013754 |
| 16396 | | Axis point 189.53840317 85.41525215 0.00000000 |
| 16397 | | Rotation angle (degrees) 173.93811101 |
| 16398 | | Shift along axis 72.67162994 |
| 16399 | | |
| 16400 | | |
| 16401 | | > fitmap #31 inMap #24 |
| 16402 | | |
| 16403 | | Fit molecule copy of CopD_Q5XJY5 (#31) to map postprocess_20231221.mrc (#24) |
| 16404 | | using 1462 atoms |
| 16405 | | average map value = 0.003728, steps = 132 |
| 16406 | | shifted from previous position = 9.68 |
| 16407 | | rotated from previous position = 9.66 degrees |
| 16408 | | atoms outside contour = 817, contour level = 0.0032978 |
| 16409 | | |
| 16410 | | Position of copy of CopD_Q5XJY5 (#31) relative to postprocess_20231221.mrc |
| 16411 | | (#24) coordinates: |
| 16412 | | Matrix rotation and translation |
| 16413 | | 0.23963491 0.93119401 0.27468678 -92.88764505 |
| 16414 | | -0.88602605 0.09409261 0.45398725 105.67552374 |
| 16415 | | 0.39690421 -0.35217084 0.84761002 472.48286733 |
| 16416 | | Axis -0.40474615 -0.06136146 -0.91236798 |
| 16417 | | Axis point -102.55080352 189.86009943 0.00000000 |
| 16418 | | Rotation angle (degrees) 84.79791770 |
| 16419 | | Shift along axis -399.96672467 |
| 16420 | | |
| 16421 | | |
| 16422 | | > hide #31 models |
| 16423 | | |
| 16424 | | > show #!32 models |
| 16425 | | |
| 16426 | | > fitmap #32 inMap #24 |
| 16427 | | |
| 16428 | | Fit molecule copy of CopG_Q9QZE5 (#32) to map postprocess_20231221.mrc (#24) |
| 16429 | | using 6673 atoms |
| 16430 | | average map value = 0.003524, steps = 84 |
| 16431 | | shifted from previous position = 5.85 |
| 16432 | | rotated from previous position = 9.62 degrees |
| 16433 | | atoms outside contour = 4302, contour level = 0.0032978 |
| 16434 | | |
| 16435 | | Position of copy of CopG_Q9QZE5 (#32) relative to postprocess_20231221.mrc |
| 16436 | | (#24) coordinates: |
| 16437 | | Matrix rotation and translation |
| 16438 | | 0.48942633 -0.51114053 -0.70653890 223.51135443 |
| 16439 | | 0.54869313 -0.44922702 0.70507513 282.31373609 |
| 16440 | | -0.67778884 -0.73275537 0.06059576 258.72093709 |
| 16441 | | Axis -0.80485009 -0.01609333 0.59325993 |
| 16442 | | Axis point 0.00000000 244.98810042 103.85799789 |
| 16443 | | Rotation angle (degrees) 116.71818112 |
| 16444 | | Shift along axis -30.94773883 |
| 16445 | | |
| 16446 | | |
| 16447 | | > hide #!32 models |
| 16448 | | |
| 16449 | | > show #33 models |
| 16450 | | |
| 16451 | | > fitmap #33 inMap #24 |
| 16452 | | |
| 16453 | | Fit molecule copy of CopZ1_P61924.pdb (#33) to map postprocess_20231221.mrc |
| 16454 | | (#24) using 1420 atoms |
| 16455 | | average map value = 0.003933, steps = 72 |
| 16456 | | shifted from previous position = 3.15 |
| 16457 | | rotated from previous position = 9.63 degrees |
| 16458 | | atoms outside contour = 672, contour level = 0.0032978 |
| 16459 | | |
| 16460 | | Position of copy of CopZ1_P61924.pdb (#33) relative to |
| 16461 | | postprocess_20231221.mrc (#24) coordinates: |
| 16462 | | Matrix rotation and translation |
| 16463 | | 0.16497815 -0.93975601 -0.29940085 230.48988127 |
| 16464 | | -0.38657680 0.21766036 -0.89620441 241.46049476 |
| 16465 | | 0.90738117 0.26359557 -0.32737866 218.20338037 |
| 16466 | | Axis 0.65793032 -0.68458225 0.31380701 |
| 16467 | | Axis point 143.39347613 0.00000000 249.44869489 |
| 16468 | | Rotation angle (degrees) 118.18825327 |
| 16469 | | Shift along axis 54.82046417 |
| 16470 | | |
| 16471 | | |
| 16472 | | > hide #33 models |
| 16473 | | |
| 16474 | | > show #34 models |
| 16475 | | |
| 16476 | | > fitmap #34 inMap #24 |
| 16477 | | |
| 16478 | | Fit molecule copy of Golph3_ Q9CRA5.pdb (#34) to map postprocess_20231221.mrc |
| 16479 | | (#24) using 2367 atoms |
| 16480 | | average map value = 0.0031, steps = 68 |
| 16481 | | shifted from previous position = 7.53 |
| 16482 | | rotated from previous position = 9.65 degrees |
| 16483 | | atoms outside contour = 1385, contour level = 0.0032978 |
| 16484 | | |
| 16485 | | Position of copy of Golph3_ Q9CRA5.pdb (#34) relative to |
| 16486 | | postprocess_20231221.mrc (#24) coordinates: |
| 16487 | | Matrix rotation and translation |
| 16488 | | 0.66117593 -0.23521496 0.71240459 198.01003745 |
| 16489 | | -0.68849984 -0.56744326 0.45163715 233.20261117 |
| 16490 | | 0.29801737 -0.78910207 -0.53712529 191.32274258 |
| 16491 | | Axis -0.89621613 0.29932197 -0.32741870 |
| 16492 | | Axis point 0.00000000 180.07492889 -4.25084707 |
| 16493 | | Rotation angle (degrees) 136.19470870 |
| 16494 | | Shift along axis -170.29976691 |
| 16495 | | |
| 16496 | | |
| 16497 | | > hide #34 models |
| 16498 | | |
| 16499 | | > show #35 models |
| 16500 | | |
| 16501 | | > fitmap #35 inMap #24 |
| 16502 | | |
| 16503 | | Fit molecule copy of CopZ2_Q9CTG7.pdb (#35) to map postprocess_20231221.mrc |
| 16504 | | (#24) using 1463 atoms |
| 16505 | | average map value = 0.003943, steps = 60 |
| 16506 | | shifted from previous position = 3.31 |
| 16507 | | rotated from previous position = 9.64 degrees |
| 16508 | | atoms outside contour = 720, contour level = 0.0032978 |
| 16509 | | |
| 16510 | | Position of copy of CopZ2_Q9CTG7.pdb (#35) relative to |
| 16511 | | postprocess_20231221.mrc (#24) coordinates: |
| 16512 | | Matrix rotation and translation |
| 16513 | | -0.81858562 0.29511592 -0.49277197 229.58139340 |
| 16514 | | 0.42681840 0.88664168 -0.17802420 242.04890220 |
| 16515 | | 0.38437439 -0.35605219 -0.85175302 217.25843400 |
| 16516 | | Axis -0.19678808 -0.96957756 0.14558092 |
| 16517 | | Axis point 58.98360344 0.00000000 149.08497815 |
| 16518 | | Rotation angle (degrees) 153.10645180 |
| 16519 | | Shift along axis -248.23538238 |
| 16520 | | |
| 16521 | | |
| 16522 | | > hide #35 models |
| 16523 | | |
| 16524 | | > show #28 models |
| 16525 | | |
| 16526 | | > show #29 models |
| 16527 | | |
| 16528 | | > show #30 models |
| 16529 | | |
| 16530 | | > show #31 models |
| 16531 | | |
| 16532 | | > show #!32 models |
| 16533 | | |
| 16534 | | > show #33 models |
| 16535 | | |
| 16536 | | > show #34 models |
| 16537 | | |
| 16538 | | > show #35 models |
| 16539 | | |
| 16540 | | > show #!25 models |
| 16541 | | |
| 16542 | | > ui mousemode right zoom |
| 16543 | | |
| 16544 | | > show #!13 models |
| 16545 | | |
| 16546 | | > hide #3 models |
| 16547 | | |
| 16548 | | > hide #!2 models |
| 16549 | | |
| 16550 | | > show #!2 models |
| 16551 | | |
| 16552 | | > hide #!1 models |
| 16553 | | |
| 16554 | | > hide #!24 models |
| 16555 | | |
| 16556 | | > hide #26 models |
| 16557 | | |
| 16558 | | > hide #27 models |
| 16559 | | |
| 16560 | | > hide #28 models |
| 16561 | | |
| 16562 | | > hide #29 models |
| 16563 | | |
| 16564 | | > hide #30 models |
| 16565 | | |
| 16566 | | > hide #31 models |
| 16567 | | |
| 16568 | | > hide #!32 models |
| 16569 | | |
| 16570 | | > hide #33 models |
| 16571 | | |
| 16572 | | > hide #34 models |
| 16573 | | |
| 16574 | | > hide #35 models |
| 16575 | | |
| 16576 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 16577 | | > dataset/Chimera sessions/20240125_linkage_1_fitting.cxs" |
| 16578 | | |
| 16579 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 16580 | | > dataset/Structure files/postprocess_20231221.mrc" |
| 16581 | | |
| 16582 | | Opened postprocess_20231221.mrc as #36, grid size 156,156,156, pixel 2.55, |
| 16583 | | shown at level 0.00309, step 1, values float32 |
| 16584 | | |
| 16585 | | > color #36 #d6d6d6ff models |
| 16586 | | |
| 16587 | | > color #24 #d6d6d6ff models |
| 16588 | | |
| 16589 | | > rename #40 id #37 |
| 16590 | | |
| 16591 | | > show #!37 models |
| 16592 | | |
| 16593 | | > hide #!36 models |
| 16594 | | |
| 16595 | | > show #!36 models |
| 16596 | | |
| 16597 | | > hide #!25 models |
| 16598 | | |
| 16599 | | > hide #!13 models |
| 16600 | | |
| 16601 | | > hide #!2 models |
| 16602 | | |
| 16603 | | > select add #36 |
| 16604 | | |
| 16605 | | 2 models selected |
| 16606 | | |
| 16607 | | > surface dust #36 size 25.5 |
| 16608 | | |
| 16609 | | > ui mousemode right "translate selected models" |
| 16610 | | |
| 16611 | | > view matrix models #36,1,0,0,78.717,0,1,0,120.2,0,0,1,104.78 |
| 16612 | | |
| 16613 | | > ui mousemode right "rotate selected models" |
| 16614 | | |
| 16615 | | > view matrix models |
| 16616 | | > #36,0.99206,-0.088449,0.089364,77.564,0.10249,0.98057,-0.16725,137.1,-0.072835,0.17508,0.98186,92.496 |
| 16617 | | |
| 16618 | | > ui mousemode right "translate selected models" |
| 16619 | | |
| 16620 | | > view matrix models |
| 16621 | | > #36,0.99206,-0.088449,0.089364,88.426,0.10249,0.98057,-0.16725,138.93,-0.072835,0.17508,0.98186,86.082 |
| 16622 | | |
| 16623 | | > fitmap #36 inMap #37 |
| 16624 | | |
| 16625 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 37871 |
| 16626 | | points |
| 16627 | | correlation = 0.6733, correlation about mean = 0.3886, overlap = 19.59 |
| 16628 | | steps = 164, shift = 29.2, angle = 12.3 degrees |
| 16629 | | |
| 16630 | | Position of postprocess_20231221.mrc (#36) relative to emd_3720_2017_leaf.map |
| 16631 | | (#37) coordinates: |
| 16632 | | Matrix rotation and translation |
| 16633 | | -0.53620047 -0.84400779 -0.01182950 402.28303931 |
| 16634 | | 0.84368442 -0.53632452 0.02350819 56.14293471 |
| 16635 | | -0.02618555 0.00262474 0.99965367 -108.56145376 |
| 16636 | | Axis -0.01237257 0.00850536 0.99988728 |
| 16637 | | Axis point 184.78476986 138.64550447 0.00000000 |
| 16638 | | Rotation angle (degrees) 122.44132659 |
| 16639 | | Shift along axis -113.04897788 |
| 16640 | | |
| 16641 | | |
| 16642 | | > view matrix models |
| 16643 | | > #36,0.99999,0.0017302,-0.0051465,67.07,-0.0017409,1,-0.0020851,109.41,0.0051429,0.002094,0.99998,136.71 |
| 16644 | | |
| 16645 | | > ui mousemode right "rotate selected models" |
| 16646 | | |
| 16647 | | > view matrix models |
| 16648 | | > #36,-0.8447,-0.37364,0.38325,480.73,0.36684,-0.92554,-0.093788,409.39,0.38976,0.06137,0.91887,54.092 |
| 16649 | | |
| 16650 | | > ui mousemode right "translate selected models" |
| 16651 | | |
| 16652 | | > view matrix models |
| 16653 | | > #36,-0.8447,-0.37364,0.38325,508.21,0.36684,-0.92554,-0.093788,447.32,0.38976,0.06137,0.91887,30.206 |
| 16654 | | |
| 16655 | | > ui mousemode right "rotate selected models" |
| 16656 | | |
| 16657 | | > view matrix models |
| 16658 | | > #36,-0.45066,-0.86467,0.22193,545.55,0.8912,-0.45017,0.055771,202.26,0.05168,0.22291,0.97347,65.992 |
| 16659 | | |
| 16660 | | > ui mousemode right "translate selected models" |
| 16661 | | |
| 16662 | | > view matrix models |
| 16663 | | > #36,-0.45066,-0.86467,0.22193,544.44,0.8912,-0.45017,0.055771,192.46,0.05168,0.22291,0.97347,68.858 |
| 16664 | | |
| 16665 | | > fitmap #36 inMap #37 |
| 16666 | | |
| 16667 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 37871 |
| 16668 | | points |
| 16669 | | correlation = 0.1777, correlation about mean = 0.1219, overlap = 4.186 |
| 16670 | | steps = 104, shift = 12.3, angle = 5.94 degrees |
| 16671 | | |
| 16672 | | Position of postprocess_20231221.mrc (#36) relative to emd_3720_2017_leaf.map |
| 16673 | | (#37) coordinates: |
| 16674 | | Matrix rotation and translation |
| 16675 | | -0.53503957 0.80553794 -0.25463958 122.34959261 |
| 16676 | | -0.84147634 -0.48131609 0.24546368 359.54287069 |
| 16677 | | 0.07516818 0.34560597 0.93536426 -171.95841740 |
| 16678 | | Axis 0.05951309 -0.19599989 -0.97879632 |
| 16679 | | Axis point 162.00515606 164.59925472 0.00000000 |
| 16680 | | Rotation angle (degrees) 122.71738942 |
| 16681 | | Shift along axis 105.12330341 |
| 16682 | | |
| 16683 | | |
| 16684 | | > ui mousemode right "rotate selected models" |
| 16685 | | |
| 16686 | | > view matrix models |
| 16687 | | > #36,-0.36897,0.92922,0.020184,236.35,-0.92839,-0.36949,0.039514,611.37,0.044175,-0.0041593,0.99902,113.27 |
| 16688 | | |
| 16689 | | > ui mousemode right "translate selected models" |
| 16690 | | |
| 16691 | | > view matrix models |
| 16692 | | > #36,-0.36897,0.92922,0.020184,215.46,-0.92839,-0.36949,0.039514,603.79,0.044175,-0.0041593,0.99902,122.93 |
| 16693 | | |
| 16694 | | > view matrix models |
| 16695 | | > #36,-0.36897,0.92922,0.020184,217.55,-0.92839,-0.36949,0.039514,598.81,0.044175,-0.0041593,0.99902,122.86 |
| 16696 | | |
| 16697 | | > ui mousemode right "rotate selected models" |
| 16698 | | |
| 16699 | | > view matrix models |
| 16700 | | > #36,0.99693,-0.046758,-0.062739,103.84,0.040616,0.99457,-0.095847,144.96,0.06688,0.093005,0.99342,100.39 |
| 16701 | | |
| 16702 | | > ui mousemode right "translate selected models" |
| 16703 | | |
| 16704 | | > view matrix models |
| 16705 | | > #36,0.99693,-0.046758,-0.062739,123.22,0.040616,0.99457,-0.095847,130.67,0.06688,0.093005,0.99342,94.744 |
| 16706 | | |
| 16707 | | > fitmap #36 inMap #37 |
| 16708 | | |
| 16709 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 37871 |
| 16710 | | points |
| 16711 | | correlation = 0.6733, correlation about mean = 0.3887, overlap = 19.59 |
| 16712 | | steps = 128, shift = 21.3, angle = 6.84 degrees |
| 16713 | | |
| 16714 | | Position of postprocess_20231221.mrc (#36) relative to emd_3720_2017_leaf.map |
| 16715 | | (#37) coordinates: |
| 16716 | | Matrix rotation and translation |
| 16717 | | -0.53615526 -0.84403605 -0.01186247 402.30101724 |
| 16718 | | 0.84371528 -0.53628046 0.02340589 56.15500330 |
| 16719 | | -0.02611703 0.00254065 0.99965568 -108.55629858 |
| 16720 | | Axis -0.01236136 0.00844494 0.99988793 |
| 16721 | | Axis point 184.79198002 138.66052905 0.00000000 |
| 16722 | | Rotation angle (degrees) 122.43822779 |
| 16723 | | Shift along axis -113.04289552 |
| 16724 | | |
| 16725 | | |
| 16726 | | > volume #36 level 0.004527 |
| 16727 | | |
| 16728 | | > select add #37 |
| 16729 | | |
| 16730 | | 4 models selected |
| 16731 | | |
| 16732 | | > select subtract #37 |
| 16733 | | |
| 16734 | | 2 models selected |
| 16735 | | |
| 16736 | | > select subtract #36 |
| 16737 | | |
| 16738 | | Nothing selected |
| 16739 | | |
| 16740 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 16741 | | > dataset/Chimera sessions/20240125_linkage_1_fitting.cxs" |
| 16742 | | |
| 16743 | | ——— End of log from Thu Jan 25 16:06:42 2024 ——— |
| 16744 | | |
| 16745 | | opened ChimeraX session |
| 16746 | | |
| 16747 | | > show #!1 models |
| 16748 | | |
| 16749 | | > hide #!36 models |
| 16750 | | |
| 16751 | | > show #!13 models |
| 16752 | | |
| 16753 | | > show #!2 models |
| 16754 | | |
| 16755 | | > hide #!2 models |
| 16756 | | |
| 16757 | | > show #!24 models |
| 16758 | | |
| 16759 | | > show #!25 models |
| 16760 | | |
| 16761 | | > hide #!25 models |
| 16762 | | |
| 16763 | | > show #!25 models |
| 16764 | | |
| 16765 | | > hide #!13 models |
| 16766 | | |
| 16767 | | > hide #!37 models |
| 16768 | | |
| 16769 | | > show #!37 models |
| 16770 | | |
| 16771 | | > show #!36 models |
| 16772 | | |
| 16773 | | > hide #!37 models |
| 16774 | | |
| 16775 | | > ui tool show "Fit in Map" |
| 16776 | | |
| 16777 | | > fitmap #36 inMap #1 |
| 16778 | | |
| 16779 | | Fit map postprocess_20231221.mrc in map postprocess_20231221.mrc using 11978 |
| 16780 | | points |
| 16781 | | correlation = 1, correlation about mean = 0.9999, overlap = 1.04 |
| 16782 | | steps = 40, shift = 0.345, angle = 0.266 degrees |
| 16783 | | |
| 16784 | | Position of postprocess_20231221.mrc (#36) relative to |
| 16785 | | postprocess_20231221.mrc (#1) coordinates: |
| 16786 | | Matrix rotation and translation |
| 16787 | | 1.00000000 0.00006676 -0.00002236 -0.02989814 |
| 16788 | | -0.00006676 1.00000000 0.00003143 -0.01486284 |
| 16789 | | 0.00002236 -0.00003143 1.00000000 -0.00253272 |
| 16790 | | Axis -0.40760935 -0.29001750 -0.86587786 |
| 16791 | | Axis point -141.44494503 333.70790751 0.00000000 |
| 16792 | | Rotation angle (degrees) 0.00441776 |
| 16793 | | Shift along axis 0.01869027 |
| 16794 | | |
| 16795 | | |
| 16796 | | > fitmap #36 inMap #1 |
| 16797 | | |
| 16798 | | Fit map postprocess_20231221.mrc in map postprocess_20231221.mrc using 11978 |
| 16799 | | points |
| 16800 | | correlation = 1, correlation about mean = 0.9998, overlap = 1.036 |
| 16801 | | steps = 44, shift = 0.0521, angle = 0.0234 degrees |
| 16802 | | |
| 16803 | | Position of postprocess_20231221.mrc (#36) relative to |
| 16804 | | postprocess_20231221.mrc (#1) coordinates: |
| 16805 | | Matrix rotation and translation |
| 16806 | | 0.99999994 -0.00034062 -0.00000287 0.06768847 |
| 16807 | | 0.00034062 0.99999994 0.00002814 -0.06173873 |
| 16808 | | 0.00000286 -0.00002814 1.00000000 -0.02901541 |
| 16809 | | Axis -0.08234288 -0.00837393 0.99656888 |
| 16810 | | Axis point 182.12386166 190.47985210 0.00000000 |
| 16811 | | Rotation angle (degrees) 0.01958306 |
| 16812 | | Shift along axis -0.03397252 |
| 16813 | | |
| 16814 | | |
| 16815 | | > fitmap #36 inMap #1 |
| 16816 | | |
| 16817 | | Fit map postprocess_20231221.mrc in map postprocess_20231221.mrc using 11978 |
| 16818 | | points |
| 16819 | | correlation = 1, correlation about mean = 0.9999, overlap = 1.04 |
| 16820 | | steps = 40, shift = 0.0226, angle = 0.0177 degrees |
| 16821 | | |
| 16822 | | Position of postprocess_20231221.mrc (#36) relative to |
| 16823 | | postprocess_20231221.mrc (#1) coordinates: |
| 16824 | | Matrix rotation and translation |
| 16825 | | 1.00000000 -0.00003169 0.00000147 -0.00541357 |
| 16826 | | 0.00003168 1.00000000 0.00002178 -0.01376358 |
| 16827 | | -0.00000147 -0.00002177 1.00000000 -0.02023148 |
| 16828 | | Axis -0.56595470 0.03824516 0.82354877 |
| 16829 | | Axis point 417.33412239 -423.15145428 0.00000000 |
| 16830 | | Rotation angle (degrees) 0.00220436 |
| 16831 | | Shift along axis -0.01412416 |
| 16832 | | |
| 16833 | | |
| 16834 | | > fitmap #36 inMap #1 |
| 16835 | | |
| 16836 | | Fit map postprocess_20231221.mrc in map postprocess_20231221.mrc using 11978 |
| 16837 | | points |
| 16838 | | correlation = 1, correlation about mean = 0.9998, overlap = 1.039 |
| 16839 | | steps = 48, shift = 0.0416, angle = 0.0236 degrees |
| 16840 | | |
| 16841 | | Position of postprocess_20231221.mrc (#36) relative to |
| 16842 | | postprocess_20231221.mrc (#1) coordinates: |
| 16843 | | Matrix rotation and translation |
| 16844 | | 0.99999993 -0.00036831 -0.00002113 0.06219646 |
| 16845 | | 0.00036830 0.99999991 -0.00021329 -0.04146817 |
| 16846 | | 0.00002121 0.00021328 0.99999998 -0.03387551 |
| 16847 | | Axis 0.50051804 -0.04968009 0.86429947 |
| 16848 | | Axis point 112.10560848 163.53476479 0.00000000 |
| 16849 | | Rotation angle (degrees) 0.02441542 |
| 16850 | | Shift along axis 0.00391201 |
| 16851 | | |
| 16852 | | |
| 16853 | | > fitmap #36 inMap #1 |
| 16854 | | |
| 16855 | | Fit map postprocess_20231221.mrc in map postprocess_20231221.mrc using 11978 |
| 16856 | | points |
| 16857 | | correlation = 1, correlation about mean = 0.9999, overlap = 1.042 |
| 16858 | | steps = 40, shift = 0.00802, angle = 0.0146 degrees |
| 16859 | | |
| 16860 | | Position of postprocess_20231221.mrc (#36) relative to |
| 16861 | | postprocess_20231221.mrc (#1) coordinates: |
| 16862 | | Matrix rotation and translation |
| 16863 | | 0.99999999 -0.00017423 -0.00000387 0.02077895 |
| 16864 | | 0.00017423 0.99999998 -0.00004973 -0.03336166 |
| 16865 | | 0.00000388 0.00004973 1.00000000 -0.00286359 |
| 16866 | | Axis 0.27440533 -0.02135869 0.96137689 |
| 16867 | | Axis point 191.03788481 113.47555473 0.00000000 |
| 16868 | | Rotation angle (degrees) 0.01038395 |
| 16869 | | Shift along axis 0.00366143 |
| 16870 | | |
| 16871 | | |
| 16872 | | > fitmap #36 inMap #2 |
| 16873 | | |
| 16874 | | Fit map postprocess_20231221.mrc in map emdb 3720 using 11978 points |
| 16875 | | correlation = 0.7662, correlation about mean = 0.1758, overlap = 15.28 |
| 16876 | | steps = 60, shift = 0.348, angle = 0.345 degrees |
| 16877 | | |
| 16878 | | Position of postprocess_20231221.mrc (#36) relative to emdb 3720 (#2) |
| 16879 | | coordinates: |
| 16880 | | Matrix rotation and translation |
| 16881 | | -0.53809684 -0.84280212 -0.01167777 402.49453385 |
| 16882 | | 0.84254598 -0.53822181 0.02082191 57.41588058 |
| 16883 | | -0.02383398 0.00136515 0.99971499 -108.92729882 |
| 16884 | | Axis -0.01154359 0.00721221 0.99990736 |
| 16885 | | Axis point 184.66596532 139.00563744 0.00000000 |
| 16886 | | Rotation angle (degrees) 122.56811178 |
| 16887 | | Shift along axis -113.14934247 |
| 16888 | | |
| 16889 | | |
| 16890 | | > fitmap #36 inMap #37 |
| 16891 | | |
| 16892 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 11978 |
| 16893 | | points |
| 16894 | | correlation = 0.7662, correlation about mean = 0.1756, overlap = 15.28 |
| 16895 | | steps = 44, shift = 0.0582, angle = 0.0299 degrees |
| 16896 | | |
| 16897 | | Position of postprocess_20231221.mrc (#36) relative to emd_3720_2017_leaf.map |
| 16898 | | (#37) coordinates: |
| 16899 | | Matrix rotation and translation |
| 16900 | | -0.53805710 -0.84282596 -0.01178946 402.51126030 |
| 16901 | | 0.84257100 -0.53818481 0.02076641 57.40218213 |
| 16902 | | -0.02384738 0.00124006 0.99971485 -108.90099824 |
| 16903 | | Axis -0.01158453 0.00715369 0.99990731 |
| 16904 | | Axis point 184.67696824 139.00477342 0.00000000 |
| 16905 | | Rotation angle (degrees) 122.56550718 |
| 16906 | | Shift along axis -113.14317184 |
| 16907 | | |
| 16908 | | |
| 16909 | | > fitmap #36 inMap #37 |
| 16910 | | |
| 16911 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 11978 |
| 16912 | | points |
| 16913 | | correlation = 0.7662, correlation about mean = 0.1757, overlap = 15.28 |
| 16914 | | steps = 48, shift = 0.0254, angle = 0.00757 degrees |
| 16915 | | |
| 16916 | | Position of postprocess_20231221.mrc (#36) relative to emd_3720_2017_leaf.map |
| 16917 | | (#37) coordinates: |
| 16918 | | Matrix rotation and translation |
| 16919 | | -0.53809630 -0.84280248 -0.01167827 402.48879877 |
| 16920 | | 0.84254637 -0.53822128 0.02082053 57.42757559 |
| 16921 | | -0.02383309 0.00136397 0.99971503 -108.92394461 |
| 16922 | | Axis -0.01154346 0.00721138 0.99990737 |
| 16923 | | Axis point 184.65994008 139.00995823 0.00000000 |
| 16924 | | Rotation angle (degrees) 122.56807333 |
| 16925 | | Shift along axis -113.14583660 |
| 16926 | | |
| 16927 | | |
| 16928 | | > hide #!1 models |
| 16929 | | |
| 16930 | | > show #!1 models |
| 16931 | | |
| 16932 | | > hide #!1 models |
| 16933 | | |
| 16934 | | > show #!1 models |
| 16935 | | |
| 16936 | | > hide #!1 models |
| 16937 | | |
| 16938 | | > show #!1 models |
| 16939 | | |
| 16940 | | > hide #!24 models |
| 16941 | | |
| 16942 | | > show #!24 models |
| 16943 | | |
| 16944 | | > hide #!25 models |
| 16945 | | |
| 16946 | | > show #!25 models |
| 16947 | | |
| 16948 | | > show #!37 models |
| 16949 | | |
| 16950 | | > hide #!37 models |
| 16951 | | |
| 16952 | | > color #36 #d6d6d6db models |
| 16953 | | |
| 16954 | | > color #36 silver models |
| 16955 | | |
| 16956 | | > combine #3 modelId #38 |
| 16957 | | |
| 16958 | | > combine #4 modelId #39 |
| 16959 | | |
| 16960 | | > combine #5 modelId #40 |
| 16961 | | |
| 16962 | | > combine #6 modelId #41 |
| 16963 | | |
| 16964 | | > combine #7 modelId #42 |
| 16965 | | |
| 16966 | | > combine #8 modelId #43 |
| 16967 | | |
| 16968 | | > combine #9 modelId #44 |
| 16969 | | |
| 16970 | | > combine #10 modelId #45 |
| 16971 | | |
| 16972 | | > combine #11 modelId #46 |
| 16973 | | |
| 16974 | | > combine #12 modelId #47 |
| 16975 | | |
| 16976 | | > hide #47 models |
| 16977 | | |
| 16978 | | > hide #46 models |
| 16979 | | |
| 16980 | | > hide #45 models |
| 16981 | | |
| 16982 | | > hide #!44 models |
| 16983 | | |
| 16984 | | > hide #43 models |
| 16985 | | |
| 16986 | | > hide #42 models |
| 16987 | | |
| 16988 | | > hide #41 models |
| 16989 | | |
| 16990 | | > hide #40 models |
| 16991 | | |
| 16992 | | > hide #39 models |
| 16993 | | |
| 16994 | | > hide #38 models |
| 16995 | | |
| 16996 | | > hide #!36 models |
| 16997 | | |
| 16998 | | > show #!37 models |
| 16999 | | |
| 17000 | | > show #!13 models |
| 17001 | | |
| 17002 | | > hide #!1 models |
| 17003 | | |
| 17004 | | > hide #!24 models |
| 17005 | | |
| 17006 | | > show #!24 models |
| 17007 | | |
| 17008 | | > hide #!25 models |
| 17009 | | |
| 17010 | | > show #!25 models |
| 17011 | | |
| 17012 | | > hide #!25 models |
| 17013 | | |
| 17014 | | > show #!25 models |
| 17015 | | |
| 17016 | | > hide #!24 models |
| 17017 | | |
| 17018 | | > show #!24 models |
| 17019 | | |
| 17020 | | > hide #!37 models |
| 17021 | | |
| 17022 | | > show #!37 models |
| 17023 | | |
| 17024 | | > show #!2 models |
| 17025 | | |
| 17026 | | > hide #!24 models |
| 17027 | | |
| 17028 | | > select add #37 |
| 17029 | | |
| 17030 | | 2 models selected |
| 17031 | | |
| 17032 | | > ui mousemode right "translate selected models" |
| 17033 | | |
| 17034 | | > view matrix models |
| 17035 | | > #37,-0.53759,0.84262,-0.031325,296.92,-0.84305,-0.53784,0.00058592,648.61,-0.016354,0.026724,0.99951,144.38 |
| 17036 | | |
| 17037 | | > ui mousemode right "rotate selected models" |
| 17038 | | |
| 17039 | | > view matrix models |
| 17040 | | > #37,0.435,0.82685,-0.35651,227.09,-0.64332,0.56242,0.51944,433.29,0.63001,0.0033908,0.77658,100.31 |
| 17041 | | |
| 17042 | | > ui mousemode right "translate selected models" |
| 17043 | | |
| 17044 | | > view matrix models |
| 17045 | | > #37,0.435,0.82685,-0.35651,217.55,-0.64332,0.56242,0.51944,437.01,0.63001,0.0033908,0.77658,111.85 |
| 17046 | | |
| 17047 | | > fitmap #37 inMap #13 |
| 17048 | | |
| 17049 | | Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage1_postprocess.mrc |
| 17050 | | using 93502 points |
| 17051 | | correlation = 0.8275, correlation about mean = 0.0683, overlap = 5387 |
| 17052 | | steps = 128, shift = 23.6, angle = 20.8 degrees |
| 17053 | | |
| 17054 | | Position of emd_3720_2017_leaf.map (#37) relative to |
| 17055 | | COPI_golph_linkage1_postprocess.mrc (#13) coordinates: |
| 17056 | | Matrix rotation and translation |
| 17057 | | 0.96497243 -0.24385286 -0.09676759 112.72644718 |
| 17058 | | 0.25704999 0.95258237 0.16282538 125.52334262 |
| 17059 | | 0.05247366 -0.18199611 0.98189811 157.44320497 |
| 17060 | | Axis -0.55069080 -0.23834299 0.79995766 |
| 17061 | | Axis point -409.53411756 597.77424891 0.00000000 |
| 17062 | | Rotation angle (degrees) 18.24499542 |
| 17063 | | Shift along axis 33.95287092 |
| 17064 | | |
| 17065 | | |
| 17066 | | > view matrix models |
| 17067 | | > #37,0.70986,0.64624,-0.28014,208.19,-0.43561,0.71535,0.54638,382.22,0.55349,-0.26582,0.7893,122.24 |
| 17068 | | |
| 17069 | | > fitmap #37 inMap #13 |
| 17070 | | |
| 17071 | | Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage1_postprocess.mrc |
| 17072 | | using 93502 points |
| 17073 | | correlation = 0.8275, correlation about mean = 0.06833, overlap = 5387 |
| 17074 | | steps = 76, shift = 16.5, angle = 0.0111 degrees |
| 17075 | | |
| 17076 | | Position of emd_3720_2017_leaf.map (#37) relative to |
| 17077 | | COPI_golph_linkage1_postprocess.mrc (#13) coordinates: |
| 17078 | | Matrix rotation and translation |
| 17079 | | 0.96495984 -0.24383080 -0.09694854 112.75477523 |
| 17080 | | 0.25706459 0.95256799 0.16288640 125.51623738 |
| 17081 | | 0.05263335 -0.18210087 0.98187014 157.44621713 |
| 17082 | | Axis -0.55080901 -0.23882345 0.79973295 |
| 17083 | | Axis point -409.41627607 597.69294757 0.00000000 |
| 17084 | | Rotation angle (degrees) 18.25002154 |
| 17085 | | Shift along axis 33.83236095 |
| 17086 | | |
| 17087 | | |
| 17088 | | > ui mousemode right "rotate selected models" |
| 17089 | | |
| 17090 | | > view matrix models |
| 17091 | | > #37,0.96793,-0.08683,-0.23573,250.2,0.19595,0.84814,0.4922,295.12,0.15719,-0.5226,0.83796,202.52 |
| 17092 | | |
| 17093 | | > view matrix models |
| 17094 | | > #37,0.99441,-0.10557,-0.003281,222,0.090994,0.84049,0.53414,302.97,-0.053633,-0.53145,0.84539,226.57 |
| 17095 | | |
| 17096 | | > view matrix models |
| 17097 | | > #37,0.98573,-0.13479,0.10084,214.18,0.029337,0.72743,0.68556,305.58,-0.16577,-0.67281,0.721,270.84 |
| 17098 | | |
| 17099 | | > ui mousemode right "translate selected models" |
| 17100 | | |
| 17101 | | > view matrix models |
| 17102 | | > #37,0.98573,-0.13479,0.10084,211.97,0.029337,0.72743,0.68556,326.99,-0.16577,-0.67281,0.721,284.38 |
| 17103 | | |
| 17104 | | > fitmap #37 inMap #13 |
| 17105 | | |
| 17106 | | Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage1_postprocess.mrc |
| 17107 | | using 93502 points |
| 17108 | | correlation = 0.7947, correlation about mean = 0.07398, overlap = 5015 |
| 17109 | | steps = 132, shift = 15.2, angle = 19.6 degrees |
| 17110 | | |
| 17111 | | Position of emd_3720_2017_leaf.map (#37) relative to |
| 17112 | | COPI_golph_linkage1_postprocess.mrc (#13) coordinates: |
| 17113 | | Matrix rotation and translation |
| 17114 | | 0.52297669 -0.84563649 0.10674393 207.17830589 |
| 17115 | | 0.50369708 0.40764960 0.76165020 111.36478075 |
| 17116 | | -0.68759334 -0.34455870 0.63913588 309.65795163 |
| 17117 | | Axis -0.57701428 0.41433761 0.70383156 |
| 17118 | | Axis point 181.50515184 241.23904203 0.00000000 |
| 17119 | | Rotation angle (degrees) 73.44825912 |
| 17120 | | Shift along axis 144.54481693 |
| 17121 | | |
| 17122 | | |
| 17123 | | > ui mousemode right "rotate selected models" |
| 17124 | | |
| 17125 | | > view matrix models |
| 17126 | | > #37,-0.12571,-0.84024,0.52745,383.52,0.73732,0.27658,0.61633,305.73,-0.66375,0.46637,0.58475,212.99 |
| 17127 | | |
| 17128 | | > view matrix models |
| 17129 | | > #37,-0.11699,-0.92563,-0.35989,497.48,0.72116,-0.32833,0.61003,380.58,-0.68282,-0.18817,0.70594,279.06 |
| 17130 | | |
| 17131 | | > view matrix models |
| 17132 | | > #37,-0.44799,-0.85868,-0.24894,513.86,0.50602,-0.47308,0.72121,409.11,-0.73706,0.19713,0.64644,246.18 |
| 17133 | | |
| 17134 | | > view matrix models |
| 17135 | | > #37,0.94059,0.12144,-0.31709,247.6,0.19754,0.56382,0.80192,310.61,0.27617,-0.81692,0.50634,269.18 |
| 17136 | | |
| 17137 | | > ui mousemode right "translate selected models" |
| 17138 | | |
| 17139 | | > view matrix models |
| 17140 | | > #37,0.94059,0.12144,-0.31709,273.94,0.19754,0.56382,0.80192,303.28,0.27617,-0.81692,0.50634,278.37 |
| 17141 | | |
| 17142 | | > fitmap #37 inMap #13 |
| 17143 | | |
| 17144 | | Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage1_postprocess.mrc |
| 17145 | | using 93502 points |
| 17146 | | correlation = 0.9169, correlation about mean = 0.1628, overlap = 7251 |
| 17147 | | steps = 84, shift = 13.2, angle = 16.2 degrees |
| 17148 | | |
| 17149 | | Position of emd_3720_2017_leaf.map (#37) relative to |
| 17150 | | COPI_golph_linkage1_postprocess.mrc (#13) coordinates: |
| 17151 | | Matrix rotation and translation |
| 17152 | | 0.71800307 -0.65223642 -0.24302103 221.33708653 |
| 17153 | | 0.67862437 0.57836847 0.45272381 126.52773866 |
| 17154 | | -0.15472725 -0.48997708 0.85789388 248.75308436 |
| 17155 | | Axis -0.57717534 -0.05405849 0.81482901 |
| 17156 | | Axis point 44.46532013 380.39002860 0.00000000 |
| 17157 | | Rotation angle (degrees) 54.75087482 |
| 17158 | | Shift along axis 68.10102134 |
| 17159 | | |
| 17160 | | |
| 17161 | | > fitmap #37 inMap #13 |
| 17162 | | |
| 17163 | | Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage1_postprocess.mrc |
| 17164 | | using 93502 points |
| 17165 | | correlation = 0.917, correlation about mean = 0.163, overlap = 7251 |
| 17166 | | steps = 36, shift = 0.0525, angle = 0.0264 degrees |
| 17167 | | |
| 17168 | | Position of emd_3720_2017_leaf.map (#37) relative to |
| 17169 | | COPI_golph_linkage1_postprocess.mrc (#13) coordinates: |
| 17170 | | Matrix rotation and translation |
| 17171 | | 0.71811713 -0.65224239 -0.24266771 221.27774252 |
| 17172 | | 0.67841410 0.57838734 0.45301475 126.48867681 |
| 17173 | | -0.15511949 -0.48994685 0.85784031 248.75619417 |
| 17174 | | Axis -0.57735479 -0.05360386 0.81473190 |
| 17175 | | Axis point 44.52800019 380.32378630 0.00000000 |
| 17176 | | Rotation angle (degrees) 54.74809097 |
| 17177 | | Shift along axis 68.13356175 |
| 17178 | | |
| 17179 | | |
| 17180 | | > select subtract #37 |
| 17181 | | |
| 17182 | | Nothing selected |
| 17183 | | |
| 17184 | | > hide #!25 models |
| 17185 | | |
| 17186 | | > hide #!2 models |
| 17187 | | |
| 17188 | | > hide #!13 models |
| 17189 | | |
| 17190 | | > show #!36 models |
| 17191 | | |
| 17192 | | > select add #36 |
| 17193 | | |
| 17194 | | 2 models selected |
| 17195 | | |
| 17196 | | > volume #36 level 0.003803 |
| 17197 | | |
| 17198 | | > select add #38 |
| 17199 | | |
| 17200 | | 9810 atoms, 10032 bonds, 1233 residues, 3 models selected |
| 17201 | | |
| 17202 | | > select add #39 |
| 17203 | | |
| 17204 | | 17311 atoms, 17651 bonds, 2186 residues, 4 models selected |
| 17205 | | |
| 17206 | | > select add #40 |
| 17207 | | |
| 17208 | | 18768 atoms, 19134 bonds, 2367 residues, 5 models selected |
| 17209 | | |
| 17210 | | > select add #41 |
| 17211 | | |
| 17212 | | 20225 atoms, 20617 bonds, 2548 residues, 6 models selected |
| 17213 | | |
| 17214 | | > select add #42 |
| 17215 | | |
| 17216 | | 27439 atoms, 27990 bonds, 3453 residues, 7 models selected |
| 17217 | | |
| 17218 | | > select add #43 |
| 17219 | | |
| 17220 | | 28901 atoms, 29471 bonds, 3632 residues, 8 models selected |
| 17221 | | |
| 17222 | | > select add #44 |
| 17223 | | |
| 17224 | | 35574 atoms, 36257 bonds, 1 pseudobond, 4485 residues, 10 models selected |
| 17225 | | |
| 17226 | | > select add #45 |
| 17227 | | |
| 17228 | | 36994 atoms, 37698 bonds, 1 pseudobond, 4662 residues, 11 models selected |
| 17229 | | |
| 17230 | | > select add #46 |
| 17231 | | |
| 17232 | | 39361 atoms, 40096 bonds, 1 pseudobond, 4960 residues, 12 models selected |
| 17233 | | |
| 17234 | | > select add #47 |
| 17235 | | |
| 17236 | | 40824 atoms, 41582 bonds, 1 pseudobond, 5145 residues, 13 models selected |
| 17237 | | |
| 17238 | | > view matrix models |
| 17239 | | > #36,0.99997,-0.00047655,-0.0074944,145.76,0.00047082,1,-0.00076704,281.05,0.0074948,0.0007635,0.99997,74.503,#38,0.90148,0.40137,0.16197,305.92,-0.20826,0.7303,-0.65061,525.57,-0.37942,0.55278,0.74194,315.68,#39,-0.016838,-0.71721,0.69665,315.58,-0.071971,0.69581,0.71461,486.46,-0.99726,-0.038106,-0.063335,313.09,#40,0.15679,0.025292,0.98731,270.57,-0.68697,-0.71543,0.12742,481.49,0.70957,-0.69823,-0.094795,254.84,#41,-0.84494,-0.49319,0.20698,386.8,-0.47648,0.51826,-0.7102,476.86,0.24299,-0.6987,-0.67289,297.2,#42,-0.16138,-0.17465,-0.97132,332.27,-0.013588,-0.98373,0.17914,458.33,-0.9868,0.042107,0.15638,315.08,#43,0.23963,0.93175,0.27278,50.506,-0.88592,0.094928,0.45402,386.33,0.39714,-0.35046,0.84821,548.51,#44,0.48985,-0.51006,-0.70703,367.21,0.54942,-0.44906,0.70462,563.22,-0.6769,-0.73361,0.060264,335.37,#45,0.16446,-0.94009,-0.29863,374.26,-0.38651,0.21712,-0.89636,522.41,0.9075,0.26284,-0.32765,294.82,#46,0.6604,-0.235,0.7132,341.85,-0.68915,-0.5669,0.45133,514.18,0.29825,-0.78956,-0.53633,267.91,#47,-0.81927,0.2953,-0.49153,373.32,0.42635,0.88692,-0.17778,522.98,0.38344,-0.35521,-0.85252,293.9 |
| 17240 | | |
| 17241 | | > ui mousemode right "rotate selected models" |
| 17242 | | |
| 17243 | | > view matrix models |
| 17244 | | > #36,-0.17575,-0.9818,-0.071927,606.61,0.82199,-0.18656,0.53808,231.14,-0.5417,0.035445,0.83982,218.11,#38,0.075028,-0.82807,0.55559,320.7,0.56985,0.49282,0.65757,447.75,-0.81831,0.26727,0.50885,340.35,#39,0.1474,-0.55502,-0.81867,357.6,-0.54294,-0.73726,0.40208,461.54,-0.82674,0.38522,-0.41001,331.55,#40,0.59459,0.74967,-0.29061,374.66,0.6425,-0.22571,0.73229,393.95,0.48338,-0.62213,-0.61587,307.37,#41,0.59748,-0.37096,0.71091,355.76,-0.47007,-0.88029,-0.064277,512.95,0.64965,-0.29577,-0.70034,278.91,#42,0.11456,0.99326,-0.017724,382.16,-0.66637,0.063599,-0.7429,481.52,-0.73677,0.096914,0.66917,323.1,#43,0.79857,-0.23009,-0.5562,484.81,0.57741,0.55381,0.59992,391.47,0.16999,-0.80022,0.5751,670.11,#44,-0.57495,0.58431,-0.57273,271.57,-0.070094,-0.73259,-0.67705,501.57,-0.81518,-0.34912,0.46216,324.53,#45,0.2836,-0.068354,0.9565,313.41,0.70041,-0.66652,-0.2553,492.89,0.65498,0.74235,-0.14115,285.37,#46,0.53916,0.65608,-0.52807,329.14,0.83108,-0.51604,0.20739,453.27,-0.13644,-0.55069,-0.82349,280.35,#47,-0.30382,-0.89612,0.32352,313.08,-0.54111,-0.11719,-0.83275,491.52,0.78416,-0.42806,-0.44929,285.13 |
| 17245 | | |
| 17246 | | > ui mousemode right "translate selected models" |
| 17247 | | |
| 17248 | | > view matrix models |
| 17249 | | > #36,-0.17575,-0.9818,-0.071927,618.94,0.82199,-0.18656,0.53808,234.64,-0.5417,0.035445,0.83982,205.55,#38,0.075028,-0.82807,0.55559,333.02,0.56985,0.49282,0.65757,451.25,-0.81831,0.26727,0.50885,327.79,#39,0.1474,-0.55502,-0.81867,369.93,-0.54294,-0.73726,0.40208,465.04,-0.82674,0.38522,-0.41001,318.98,#40,0.59459,0.74967,-0.29061,386.98,0.6425,-0.22571,0.73229,397.45,0.48338,-0.62213,-0.61587,294.8,#41,0.59748,-0.37096,0.71091,368.09,-0.47007,-0.88029,-0.064277,516.45,0.64965,-0.29577,-0.70034,266.35,#42,0.11456,0.99326,-0.017724,394.49,-0.66637,0.063599,-0.7429,485.02,-0.73677,0.096914,0.66917,310.53,#43,0.79857,-0.23009,-0.5562,497.14,0.57741,0.55381,0.59992,394.97,0.16999,-0.80022,0.5751,657.54,#44,-0.57495,0.58431,-0.57273,283.9,-0.070094,-0.73259,-0.67705,505.07,-0.81518,-0.34912,0.46216,311.96,#45,0.2836,-0.068354,0.9565,325.73,0.70041,-0.66652,-0.2553,496.39,0.65498,0.74235,-0.14115,272.8,#46,0.53916,0.65608,-0.52807,341.46,0.83108,-0.51604,0.20739,456.77,-0.13644,-0.55069,-0.82349,267.78,#47,-0.30382,-0.89612,0.32352,325.4,-0.54111,-0.11719,-0.83275,495.02,0.78416,-0.42806,-0.44929,272.57 |
| 17250 | | |
| 17251 | | > ui mousemode right "rotate selected models" |
| 17252 | | |
| 17253 | | > view matrix models |
| 17254 | | > #36,-0.14175,-0.98979,-0.014596,600.72,0.68361,-0.10855,0.72173,207.01,-0.71595,0.092328,0.69202,263.27,#38,0.085117,-0.78862,0.60896,332.11,0.35833,0.59452,0.71983,464.31,-0.92971,0.15694,0.33319,335.75,#39,0.089987,-0.58688,-0.80466,369.5,-0.72835,-0.58982,0.34873,473.23,-0.67927,0.55469,-0.48053,323.43,#40,0.64622,0.71605,-0.26395,381.73,0.69674,-0.41246,0.58688,400.91,0.31137,-0.56315,-0.76545,315.44,#41,0.58693,-0.43191,0.68481,369.21,-0.34465,-0.89865,-0.27139,511.04,0.73262,-0.076734,-0.6763,260.28,#42,0.052429,0.99771,-0.042766,394.96,-0.82513,0.019158,-0.56462,489.05,-0.56251,0.06489,0.82424,310.19,#43,0.83658,-0.21974,-0.50184,502.17,0.54752,0.36693,0.75206,475.43,0.018878,-0.90392,0.42728,667.1,#44,-0.60188,0.52855,-0.59864,285.87,-0.21946,-0.83024,-0.51238,516.09,-0.76784,-0.17701,0.61571,308.52,#45,0.34448,-0.086523,0.9348,325.94,0.81311,-0.4702,-0.34315,495.84,0.46924,0.87831,-0.09162,271.86,#46,0.58403,0.60728,-0.53863,339.09,0.73962,-0.67153,0.044843,455.2,-0.33447,-0.42457,-0.84135,276,#47,-0.31266,-0.91377,0.25936,325.52,-0.32337,-0.15434,-0.9336,494.48,0.89313,-0.37577,-0.24723,271.96 |
| 17255 | | |
| 17256 | | > ui mousemode right "translate selected models" |
| 17257 | | |
| 17258 | | > view matrix models |
| 17259 | | > #36,-0.14175,-0.98979,-0.014596,604.48,0.68361,-0.10855,0.72173,211.99,-0.71595,0.092328,0.69202,255.66,#38,0.085117,-0.78862,0.60896,335.87,0.35833,0.59452,0.71983,469.29,-0.92971,0.15694,0.33319,328.13,#39,0.089987,-0.58688,-0.80466,373.27,-0.72835,-0.58982,0.34873,478.21,-0.67927,0.55469,-0.48053,315.81,#40,0.64622,0.71605,-0.26395,385.5,0.69674,-0.41246,0.58688,405.9,0.31137,-0.56315,-0.76545,307.82,#41,0.58693,-0.43191,0.68481,372.98,-0.34465,-0.89865,-0.27139,516.02,0.73262,-0.076734,-0.6763,252.66,#42,0.052429,0.99771,-0.042766,398.73,-0.82513,0.019158,-0.56462,494.04,-0.56251,0.06489,0.82424,302.58,#43,0.83658,-0.21974,-0.50184,505.94,0.54752,0.36693,0.75206,480.41,0.018878,-0.90392,0.42728,659.48,#44,-0.60188,0.52855,-0.59864,289.64,-0.21946,-0.83024,-0.51238,521.07,-0.76784,-0.17701,0.61571,300.9,#45,0.34448,-0.086523,0.9348,329.7,0.81311,-0.4702,-0.34315,500.82,0.46924,0.87831,-0.09162,264.24,#46,0.58403,0.60728,-0.53863,342.86,0.73962,-0.67153,0.044843,460.18,-0.33447,-0.42457,-0.84135,268.38,#47,-0.31266,-0.91377,0.25936,329.28,-0.32337,-0.15434,-0.9336,499.46,0.89313,-0.37577,-0.24723,264.34 |
| 17260 | | |
| 17261 | | > ui mousemode right "rotate selected models" |
| 17262 | | |
| 17263 | | > view matrix models |
| 17264 | | > #36,-0.02392,-0.9965,-0.08006,595.67,0.66786,-0.075519,0.74044,204.41,-0.7439,-0.035757,0.66733,293.1,#38,0.21766,-0.78165,0.5845,328.82,0.33005,0.62253,0.7096,471.72,-0.91853,0.038461,0.39348,323.79,#39,0.15288,-0.67387,-0.72286,367.78,-0.74903,-0.55616,0.36006,479.15,-0.64466,0.4864,-0.58977,316.28,#40,0.62348,0.76886,-0.14184,378.48,0.68479,-0.44948,0.57361,406.3,0.37727,-0.45477,-0.80675,311.63,#41,0.47441,-0.44856,0.75745,377.01,-0.34241,-0.88671,-0.31065,515.21,0.81098,-0.11198,-0.57425,252.79,#42,0.097155,0.98082,-0.16898,395.27,-0.84139,-0.0097478,-0.54034,493.82,-0.53163,0.19467,0.8243,306.14,#43,0.84514,-0.08749,-0.52734,454.54,0.52186,0.34871,0.7785,486.65,0.11578,-0.93314,0.34037,674.24,#44,-0.50383,0.51854,-0.69085,288.31,-0.22173,-0.85061,-0.47675,524.14,-0.83486,-0.087024,0.54354,289.55,#45,0.30788,-0.21617,0.92654,332.1,0.81464,-0.44319,-0.37409,501.67,0.4915,0.86998,0.03965,258.94,#46,0.64746,0.63421,-0.42258,343.22,0.71192,-0.70121,0.038406,460.78,-0.27196,-0.32571,-0.90551,265.7,#47,-0.43718,-0.86175,0.25743,331.63,-0.28912,-0.13638,-0.94753,500.33,0.85164,-0.48867,-0.18953,259.01 |
| 17265 | | |
| 17266 | | > ui mousemode right "translate selected models" |
| 17267 | | |
| 17268 | | > view matrix models |
| 17269 | | > #36,-0.02392,-0.9965,-0.08006,596.43,0.66786,-0.075519,0.74044,204.57,-0.7439,-0.035757,0.66733,291.78,#38,0.21766,-0.78165,0.5845,329.59,0.33005,0.62253,0.7096,471.88,-0.91853,0.038461,0.39348,322.47,#39,0.15288,-0.67387,-0.72286,368.55,-0.74903,-0.55616,0.36006,479.31,-0.64466,0.4864,-0.58977,314.96,#40,0.62348,0.76886,-0.14184,379.24,0.68479,-0.44948,0.57361,406.46,0.37727,-0.45477,-0.80675,310.31,#41,0.47441,-0.44856,0.75745,377.77,-0.34241,-0.88671,-0.31065,515.37,0.81098,-0.11198,-0.57425,251.47,#42,0.097155,0.98082,-0.16898,396.04,-0.84139,-0.0097478,-0.54034,493.98,-0.53163,0.19467,0.8243,304.82,#43,0.84514,-0.08749,-0.52734,455.31,0.52186,0.34871,0.7785,486.81,0.11578,-0.93314,0.34037,672.92,#44,-0.50383,0.51854,-0.69085,289.08,-0.22173,-0.85061,-0.47675,524.3,-0.83486,-0.087024,0.54354,288.23,#45,0.30788,-0.21617,0.92654,332.87,0.81464,-0.44319,-0.37409,501.83,0.4915,0.86998,0.03965,257.62,#46,0.64746,0.63421,-0.42258,343.98,0.71192,-0.70121,0.038406,460.94,-0.27196,-0.32571,-0.90551,264.38,#47,-0.43718,-0.86175,0.25743,332.39,-0.28912,-0.13638,-0.94753,500.49,0.85164,-0.48867,-0.18953,257.69 |
| 17270 | | |
| 17271 | | > view matrix models |
| 17272 | | > #36,-0.02392,-0.9965,-0.08006,597.33,0.66786,-0.075519,0.74044,204.9,-0.7439,-0.035757,0.66733,290.48,#38,0.21766,-0.78165,0.5845,330.49,0.33005,0.62253,0.7096,472.21,-0.91853,0.038461,0.39348,321.18,#39,0.15288,-0.67387,-0.72286,369.45,-0.74903,-0.55616,0.36006,479.65,-0.64466,0.4864,-0.58977,313.66,#40,0.62348,0.76886,-0.14184,380.14,0.68479,-0.44948,0.57361,406.8,0.37727,-0.45477,-0.80675,309.01,#41,0.47441,-0.44856,0.75745,378.68,-0.34241,-0.88671,-0.31065,515.7,0.81098,-0.11198,-0.57425,250.17,#42,0.097155,0.98082,-0.16898,396.94,-0.84139,-0.0097478,-0.54034,494.31,-0.53163,0.19467,0.8243,303.52,#43,0.84514,-0.08749,-0.52734,456.21,0.52186,0.34871,0.7785,487.14,0.11578,-0.93314,0.34037,671.62,#44,-0.50383,0.51854,-0.69085,289.98,-0.22173,-0.85061,-0.47675,524.63,-0.83486,-0.087024,0.54354,286.93,#45,0.30788,-0.21617,0.92654,333.77,0.81464,-0.44319,-0.37409,502.17,0.4915,0.86998,0.03965,256.32,#46,0.64746,0.63421,-0.42258,344.88,0.71192,-0.70121,0.038406,461.27,-0.27196,-0.32571,-0.90551,263.08,#47,-0.43718,-0.86175,0.25743,333.29,-0.28912,-0.13638,-0.94753,500.82,0.85164,-0.48867,-0.18953,256.39 |
| 17273 | | |
| 17274 | | > ui mousemode right "rotate selected models" |
| 17275 | | |
| 17276 | | > view matrix models |
| 17277 | | > #36,-0.14104,-0.98937,-0.035348,610.52,0.86225,-0.14031,0.48665,233.65,-0.48644,0.03816,0.87288,175.83,#38,0.093677,-0.79942,0.59342,337.15,0.61622,0.51471,0.59611,455.77,-0.78199,0.30984,0.54083,315.62,#39,0.11063,-0.5864,-0.80243,374.59,-0.49601,-0.73223,0.46671,468.27,-0.86124,0.34638,-0.37186,307.16,#40,0.63133,0.73025,-0.26107,387.99,0.5808,-0.22215,0.78315,401.61,0.51389,-0.64606,-0.56438,278.53,#41,0.58095,-0.41761,0.69864,374.69,-0.53888,-0.84063,-0.054384,522.94,0.61001,-0.34489,-0.7134,257.88,#42,0.072755,0.99625,-0.046771,400.01,-0.62315,0.0087923,-0.78205,487.53,-0.77871,0.086044,0.62145,299.61,#43,0.82816,-0.21163,-0.519,502.1,0.52582,0.61396,0.5887,370.77,0.19406,-0.76044,0.61974,638.74,#44,-0.58717,0.54313,-0.6002,290.58,0.0098331,-0.73664,-0.67622,512.82,-0.8094,-0.40296,0.42719,303.93,#45,0.32562,-0.092693,0.94095,331.47,0.64283,-0.70809,-0.29221,504.61,0.69336,0.70001,-0.17098,263.69,#46,0.57811,0.62321,-0.52669,345.15,0.81075,-0.51151,0.28467,464.67,-0.091999,-0.59158,-0.80098,255.97,#47,-0.32114,-0.90576,0.27654,331.07,-0.57423,-0.045966,-0.8174,503.27,0.75308,-0.4213,-0.50536,263.37 |
| 17278 | | |
| 17279 | | > ui mousemode right "translate selected models" |
| 17280 | | |
| 17281 | | > view matrix models |
| 17282 | | > #36,-0.14104,-0.98937,-0.035348,600.23,0.86225,-0.14031,0.48665,227.6,-0.48644,0.03816,0.87288,176.83,#38,0.093677,-0.79942,0.59342,326.87,0.61622,0.51471,0.59611,449.73,-0.78199,0.30984,0.54083,316.62,#39,0.11063,-0.5864,-0.80243,364.31,-0.49601,-0.73223,0.46671,462.23,-0.86124,0.34638,-0.37186,308.16,#40,0.63133,0.73025,-0.26107,377.7,0.5808,-0.22215,0.78315,395.56,0.51389,-0.64606,-0.56438,279.53,#41,0.58095,-0.41761,0.69864,364.4,-0.53888,-0.84063,-0.054384,516.9,0.61001,-0.34489,-0.7134,258.88,#42,0.072755,0.99625,-0.046771,389.73,-0.62315,0.0087923,-0.78205,481.48,-0.77871,0.086044,0.62145,300.61,#43,0.82816,-0.21163,-0.519,491.82,0.52582,0.61396,0.5887,364.73,0.19406,-0.76044,0.61974,639.74,#44,-0.58717,0.54313,-0.6002,280.29,0.0098331,-0.73664,-0.67622,506.78,-0.8094,-0.40296,0.42719,304.93,#45,0.32562,-0.092693,0.94095,321.19,0.64283,-0.70809,-0.29221,498.56,0.69336,0.70001,-0.17098,264.69,#46,0.57811,0.62321,-0.52669,334.87,0.81075,-0.51151,0.28467,458.62,-0.091999,-0.59158,-0.80098,256.97,#47,-0.32114,-0.90576,0.27654,320.78,-0.57423,-0.045966,-0.8174,497.23,0.75308,-0.4213,-0.50536,264.37 |
| 17283 | | |
| 17284 | | > view matrix models |
| 17285 | | > #36,-0.14104,-0.98937,-0.035348,603.93,0.86225,-0.14031,0.48665,224.26,-0.48644,0.03816,0.87288,175.26,#38,0.093677,-0.79942,0.59342,330.57,0.61622,0.51471,0.59611,446.38,-0.78199,0.30984,0.54083,315.05,#39,0.11063,-0.5864,-0.80243,368.01,-0.49601,-0.73223,0.46671,458.88,-0.86124,0.34638,-0.37186,306.58,#40,0.63133,0.73025,-0.26107,381.4,0.5808,-0.22215,0.78315,392.21,0.51389,-0.64606,-0.56438,277.96,#41,0.58095,-0.41761,0.69864,368.1,-0.53888,-0.84063,-0.054384,513.55,0.61001,-0.34489,-0.7134,257.31,#42,0.072755,0.99625,-0.046771,393.43,-0.62315,0.0087923,-0.78205,478.13,-0.77871,0.086044,0.62145,299.04,#43,0.82816,-0.21163,-0.519,495.52,0.52582,0.61396,0.5887,361.38,0.19406,-0.76044,0.61974,638.17,#44,-0.58717,0.54313,-0.6002,283.99,0.0098331,-0.73664,-0.67622,503.43,-0.8094,-0.40296,0.42719,303.36,#45,0.32562,-0.092693,0.94095,324.89,0.64283,-0.70809,-0.29221,495.21,0.69336,0.70001,-0.17098,263.12,#46,0.57811,0.62321,-0.52669,338.57,0.81075,-0.51151,0.28467,455.28,-0.091999,-0.59158,-0.80098,255.39,#47,-0.32114,-0.90576,0.27654,324.48,-0.57423,-0.045966,-0.8174,493.88,0.75308,-0.4213,-0.50536,262.8 |
| 17286 | | |
| 17287 | | > view matrix models |
| 17288 | | > #36,-0.14104,-0.98937,-0.035348,601.71,0.86225,-0.14031,0.48665,225.16,-0.48644,0.03816,0.87288,175.33,#38,0.093677,-0.79942,0.59342,328.34,0.61622,0.51471,0.59611,447.28,-0.78199,0.30984,0.54083,315.12,#39,0.11063,-0.5864,-0.80243,365.78,-0.49601,-0.73223,0.46671,459.78,-0.86124,0.34638,-0.37186,306.65,#40,0.63133,0.73025,-0.26107,379.18,0.5808,-0.22215,0.78315,393.12,0.51389,-0.64606,-0.56438,278.03,#41,0.58095,-0.41761,0.69864,365.88,-0.53888,-0.84063,-0.054384,514.45,0.61001,-0.34489,-0.7134,257.38,#42,0.072755,0.99625,-0.046771,391.2,-0.62315,0.0087923,-0.78205,479.04,-0.77871,0.086044,0.62145,299.11,#43,0.82816,-0.21163,-0.519,493.29,0.52582,0.61396,0.5887,362.28,0.19406,-0.76044,0.61974,638.24,#44,-0.58717,0.54313,-0.6002,281.77,0.0098331,-0.73664,-0.67622,504.33,-0.8094,-0.40296,0.42719,303.42,#45,0.32562,-0.092693,0.94095,322.66,0.64283,-0.70809,-0.29221,496.12,0.69336,0.70001,-0.17098,263.18,#46,0.57811,0.62321,-0.52669,336.34,0.81075,-0.51151,0.28467,456.18,-0.091999,-0.59158,-0.80098,255.46,#47,-0.32114,-0.90576,0.27654,322.26,-0.57423,-0.045966,-0.8174,494.78,0.75308,-0.4213,-0.50536,262.87 |
| 17289 | | |
| 17290 | | > ui mousemode right "rotate selected models" |
| 17291 | | |
| 17292 | | > view matrix models |
| 17293 | | > #36,-0.22059,-0.97493,0.029062,601.16,0.71752,-0.14202,0.6819,212.54,-0.66068,0.17128,0.73086,216.23,#38,-0.0056811,-0.78578,0.61847,333.87,0.41116,0.56195,0.71775,457.6,-0.91154,0.25837,0.31989,326.29,#39,0.047296,-0.52144,-0.85198,369.81,-0.68704,-0.63612,0.35119,468.26,-0.72508,0.56873,-0.38833,311.32,#40,0.65421,0.67339,-0.34431,383.02,0.69698,-0.36003,0.62016,396.88,0.29364,-0.64569,-0.70488,298.17,#41,0.65725,-0.41529,0.62894,363.06,-0.36725,-0.90519,-0.21392,509.46,0.65814,-0.090383,-0.74745,250.7,#42,0.022496,0.9988,0.043523,393.62,-0.79113,0.044401,-0.61004,485.52,-0.61124,-0.020709,0.79117,296.85,#43,0.82161,-0.30721,-0.48018,532.13,0.56961,0.40952,0.71263,455.42,-0.022283,-0.85902,0.51145,641.78,#44,-0.6617,0.53069,-0.52965,284.19,-0.19427,-0.80364,-0.56252,509.44,-0.72417,-0.26932,0.63486,306.17,#45,0.36483,0.002442,0.93107,321.34,0.79573,-0.52004,-0.31044,492.4,0.48344,0.85414,-0.19167,265.09,#46,0.5344,0.58349,-0.61152,335.79,0.77345,-0.62936,0.075398,451.99,-0.34087,-0.51327,-0.78763,265.74,#47,-0.22497,-0.93933,0.25892,320.97,-0.38084,-0.15982,-0.91073,491.02,0.89686,-0.30349,-0.32178,265.14 |
| 17294 | | |
| 17295 | | > view matrix models |
| 17296 | | > #36,-0.39651,-0.91731,-0.036286,640.79,0.51918,-0.25666,0.81522,247.92,-0.75712,0.30441,0.57802,243.23,#38,-0.15056,-0.85098,0.50316,343.42,0.20545,0.47092,0.85792,464.75,-0.96702,0.23254,0.10393,333.57,#39,0.11254,-0.353,-0.92883,375.59,-0.80679,-0.57812,0.12195,477.64,-0.58002,0.73565,-0.34986,312.86,#40,0.53987,0.67427,-0.50389,400.29,0.8381,-0.3749,0.39628,408.13,0.078296,-0.63625,-0.7675,312.29,#41,0.76186,-0.25237,0.59655,356.84,-0.11214,-0.95846,-0.26225,503.65,0.63795,0.1329,-0.75852,246.61,#42,0.11577,0.96998,0.21384,394.72,-0.8874,0.19772,-0.41644,495.07,-0.44622,-0.14155,0.88366,292.75,#43,0.70209,-0.44187,-0.55841,562.96,0.67591,0.16676,0.71787,560.14,-0.22408,-0.88144,0.41575,619.13,#44,-0.67091,0.64319,-0.36904,283.84,-0.44415,-0.74706,-0.4946,502.65,-0.59381,-0.16792,0.78688,309.6,#45,0.25326,0.16238,0.95367,320.11,0.92689,-0.323,-0.19115,483.55,0.277,0.93236,-0.23231,268.63,#46,0.35897,0.64467,-0.67493,341.56,0.76027,-0.62144,-0.18921,447,-0.54141,-0.44521,-0.71321,275.4,#47,-0.082224,-0.91641,0.39171,319.99,-0.21602,-0.36731,-0.90466,482.18,0.97292,-0.159,-0.16776,268.99 |
| 17297 | | |
| 17298 | | > ui mousemode right "translate selected models" |
| 17299 | | |
| 17300 | | > view matrix models |
| 17301 | | > #36,-0.39651,-0.91731,-0.036286,637.92,0.51918,-0.25666,0.81522,250.92,-0.75712,0.30441,0.57802,239.89,#38,-0.15056,-0.85098,0.50316,340.55,0.20545,0.47092,0.85792,467.75,-0.96702,0.23254,0.10393,330.23,#39,0.11254,-0.353,-0.92883,372.71,-0.80679,-0.57812,0.12195,480.64,-0.58002,0.73565,-0.34986,309.52,#40,0.53987,0.67427,-0.50389,397.41,0.8381,-0.3749,0.39628,411.12,0.078296,-0.63625,-0.7675,308.95,#41,0.76186,-0.25237,0.59655,353.97,-0.11214,-0.95846,-0.26225,506.65,0.63795,0.1329,-0.75852,243.27,#42,0.11577,0.96998,0.21384,391.84,-0.8874,0.19772,-0.41644,498.06,-0.44622,-0.14155,0.88366,289.42,#43,0.70209,-0.44187,-0.55841,560.08,0.67591,0.16676,0.71787,563.13,-0.22408,-0.88144,0.41575,615.79,#44,-0.67091,0.64319,-0.36904,280.96,-0.44415,-0.74706,-0.4946,505.65,-0.59381,-0.16792,0.78688,306.26,#45,0.25326,0.16238,0.95367,317.24,0.92689,-0.323,-0.19115,486.55,0.277,0.93236,-0.23231,265.29,#46,0.35897,0.64467,-0.67493,338.68,0.76027,-0.62144,-0.18921,450,-0.54141,-0.44521,-0.71321,272.06,#47,-0.082224,-0.91641,0.39171,317.12,-0.21602,-0.36731,-0.90466,485.17,0.97292,-0.159,-0.16776,265.65 |
| 17302 | | |
| 17303 | | > select subtract #36 |
| 17304 | | |
| 17305 | | 40824 atoms, 41582 bonds, 1 pseudobond, 5145 residues, 11 models selected |
| 17306 | | |
| 17307 | | > select subtract #38 |
| 17308 | | |
| 17309 | | 31014 atoms, 31550 bonds, 1 pseudobond, 3912 residues, 10 models selected |
| 17310 | | |
| 17311 | | > select subtract #39 |
| 17312 | | |
| 17313 | | 23513 atoms, 23931 bonds, 1 pseudobond, 2959 residues, 9 models selected |
| 17314 | | |
| 17315 | | > select subtract #40 |
| 17316 | | |
| 17317 | | 22056 atoms, 22448 bonds, 1 pseudobond, 2778 residues, 8 models selected |
| 17318 | | |
| 17319 | | > select subtract #41 |
| 17320 | | |
| 17321 | | 20599 atoms, 20965 bonds, 1 pseudobond, 2597 residues, 7 models selected |
| 17322 | | |
| 17323 | | > select subtract #42 |
| 17324 | | |
| 17325 | | 13385 atoms, 13592 bonds, 1 pseudobond, 1692 residues, 6 models selected |
| 17326 | | |
| 17327 | | > select subtract #43 |
| 17328 | | |
| 17329 | | 11923 atoms, 12111 bonds, 1 pseudobond, 1513 residues, 5 models selected |
| 17330 | | |
| 17331 | | > select subtract #44 |
| 17332 | | |
| 17333 | | 5250 atoms, 5325 bonds, 660 residues, 3 models selected |
| 17334 | | |
| 17335 | | > select subtract #45 |
| 17336 | | |
| 17337 | | 3830 atoms, 3884 bonds, 483 residues, 2 models selected |
| 17338 | | |
| 17339 | | > select subtract #46 |
| 17340 | | |
| 17341 | | 1463 atoms, 1486 bonds, 185 residues, 1 model selected |
| 17342 | | |
| 17343 | | > select subtract #47 |
| 17344 | | |
| 17345 | | Nothing selected |
| 17346 | | |
| 17347 | | > fitmap #36 inMap #37 |
| 17348 | | |
| 17349 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 17524 |
| 17350 | | points |
| 17351 | | correlation = 0.7396, correlation about mean = 0.2452, overlap = 17.26 |
| 17352 | | steps = 92, shift = 10.2, angle = 6.87 degrees |
| 17353 | | |
| 17354 | | Position of postprocess_20231221.mrc (#36) relative to emd_3720_2017_leaf.map |
| 17355 | | (#37) coordinates: |
| 17356 | | Matrix rotation and translation |
| 17357 | | -0.53718104 -0.84338522 -0.01174480 402.36650062 |
| 17358 | | 0.84309296 -0.53730541 0.02229769 56.76182007 |
| 17359 | | -0.02511609 0.00207594 0.99968240 -108.75374613 |
| 17360 | | Axis -0.01198928 0.00792771 0.99989670 |
| 17361 | | Axis point 184.71559779 138.80845988 0.00000000 |
| 17362 | | Rotation angle (degrees) 122.50695744 |
| 17363 | | Shift along axis -113.11660621 |
| 17364 | | |
| 17365 | | |
| 17366 | | > hide #!37 models |
| 17367 | | |
| 17368 | | > volume #36 level 0.003492 |
| 17369 | | |
| 17370 | | > volume #36 color #c0c0c0bd |
| 17371 | | |
| 17372 | | > volume #36 color #c0c0c0b4 |
| 17373 | | |
| 17374 | | > volume #36 color #c0c0c0b3 |
| 17375 | | |
| 17376 | | > show #38 models |
| 17377 | | |
| 17378 | | > volume #36 level 0.003026 |
| 17379 | | |
| 17380 | | > select add #38 |
| 17381 | | |
| 17382 | | 9810 atoms, 10032 bonds, 1233 residues, 1 model selected |
| 17383 | | |
| 17384 | | > view matrix models |
| 17385 | | > #38,-0.15056,-0.85098,0.50316,328.48,0.20545,0.47092,0.85792,483.33,-0.96702,0.23254,0.10393,331.97 |
| 17386 | | |
| 17387 | | > fitmap #38 inMap #36 |
| 17388 | | |
| 17389 | | Fit molecule copy of CopA_F8WHL2.pdb (#38) to map postprocess_20231221.mrc |
| 17390 | | (#36) using 9810 atoms |
| 17391 | | average map value = 0.001845, steps = 112 |
| 17392 | | shifted from previous position = 14.5 |
| 17393 | | rotated from previous position = 6.9 degrees |
| 17394 | | atoms outside contour = 7363, contour level = 0.0030265 |
| 17395 | | |
| 17396 | | Position of copy of CopA_F8WHL2.pdb (#38) relative to postprocess_20231221.mrc |
| 17397 | | (#36) coordinates: |
| 17398 | | Matrix rotation and translation |
| 17399 | | 0.89978186 0.40470537 0.16311391 162.21661696 |
| 17400 | | -0.20990723 0.72919571 -0.65131601 244.62524809 |
| 17401 | | -0.38253306 0.55180355 0.74106767 239.08673404 |
| 17402 | | Axis 0.82572655 0.37448913 -0.42182171 |
| 17403 | | Axis point 0.00000000 -322.99650071 438.18015944 |
| 17404 | | Rotation angle (degrees) 46.76261319 |
| 17405 | | Shift along axis 124.70408997 |
| 17406 | | |
| 17407 | | |
| 17408 | | > select subtract #38 |
| 17409 | | |
| 17410 | | Nothing selected |
| 17411 | | |
| 17412 | | > hide #38 models |
| 17413 | | |
| 17414 | | > show #39 models |
| 17415 | | |
| 17416 | | > fitmap #39 inMap #36 |
| 17417 | | |
| 17418 | | Fit molecule copy of CopB_Q9JIF7.pdb (#39) to map postprocess_20231221.mrc |
| 17419 | | (#36) using 7501 atoms |
| 17420 | | average map value = 0.002525, steps = 312 |
| 17421 | | shifted from previous position = 7.47 |
| 17422 | | rotated from previous position = 20.9 degrees |
| 17423 | | atoms outside contour = 5350, contour level = 0.0030265 |
| 17424 | | |
| 17425 | | Position of copy of CopB_Q9JIF7.pdb (#39) relative to postprocess_20231221.mrc |
| 17426 | | (#36) coordinates: |
| 17427 | | Matrix rotation and translation |
| 17428 | | 0.06460156 -0.55302768 0.83065457 167.09256288 |
| 17429 | | -0.18845106 0.81065501 0.55436870 200.49543367 |
| 17430 | | -0.97995553 -0.19235083 -0.05184908 229.32041111 |
| 17431 | | Axis -0.37482373 0.90885480 0.18300307 |
| 17432 | | Axis point 225.47316101 0.00000000 -20.15378941 |
| 17433 | | Rotation angle (degrees) 95.06559927 |
| 17434 | | Shift along axis 161.55732002 |
| 17435 | | |
| 17436 | | |
| 17437 | | > hide #39 models |
| 17438 | | |
| 17439 | | > show #40 models |
| 17440 | | |
| 17441 | | > fitmap #39 inMap #36 |
| 17442 | | |
| 17443 | | Fit molecule copy of CopB_Q9JIF7.pdb (#39) to map postprocess_20231221.mrc |
| 17444 | | (#36) using 7501 atoms |
| 17445 | | average map value = 0.002526, steps = 40 |
| 17446 | | shifted from previous position = 0.0746 |
| 17447 | | rotated from previous position = 0.208 degrees |
| 17448 | | atoms outside contour = 5341, contour level = 0.0030265 |
| 17449 | | |
| 17450 | | Position of copy of CopB_Q9JIF7.pdb (#39) relative to postprocess_20231221.mrc |
| 17451 | | (#36) coordinates: |
| 17452 | | Matrix rotation and translation |
| 17453 | | 0.06528128 -0.55023071 0.83245692 167.12871758 |
| 17454 | | -0.18990182 0.81213990 0.55169383 200.50577283 |
| 17455 | | -0.97963037 -0.19410036 -0.05147229 229.37928036 |
| 17456 | | Axis -0.37431722 0.90949419 0.18085058 |
| 17457 | | Axis point 225.69640896 0.00000000 -19.86539156 |
| 17458 | | Rotation angle (degrees) 94.99251240 |
| 17459 | | Shift along axis 161.28305324 |
| 17460 | | |
| 17461 | | |
| 17462 | | > fitmap #39 inMap #36 |
| 17463 | | |
| 17464 | | Fit molecule copy of CopB_Q9JIF7.pdb (#39) to map postprocess_20231221.mrc |
| 17465 | | (#36) using 7501 atoms |
| 17466 | | average map value = 0.002525, steps = 40 |
| 17467 | | shifted from previous position = 0.00858 |
| 17468 | | rotated from previous position = 0.053 degrees |
| 17469 | | atoms outside contour = 5342, contour level = 0.0030265 |
| 17470 | | |
| 17471 | | Position of copy of CopB_Q9JIF7.pdb (#39) relative to postprocess_20231221.mrc |
| 17472 | | (#36) coordinates: |
| 17473 | | Matrix rotation and translation |
| 17474 | | 0.06525033 -0.55081120 0.83207537 167.12641327 |
| 17475 | | -0.18926120 0.81188569 0.55228781 200.50384422 |
| 17476 | | -0.97975639 -0.19351655 -0.05127138 229.37027211 |
| 17477 | | Axis -0.37432371 0.90936930 0.18146413 |
| 17478 | | Axis point 225.64616418 0.00000000 -19.97146360 |
| 17479 | | Rotation angle (degrees) 94.99493526 |
| 17480 | | Shift along axis 161.39513805 |
| 17481 | | |
| 17482 | | |
| 17483 | | > fitmap #40 inMap #36 |
| 17484 | | |
| 17485 | | Fit molecule copy of hArf1_P84078 (#40) to map postprocess_20231221.mrc (#36) |
| 17486 | | using 1457 atoms |
| 17487 | | average map value = 0.002587, steps = 80 |
| 17488 | | shifted from previous position = 10 |
| 17489 | | rotated from previous position = 6.85 degrees |
| 17490 | | atoms outside contour = 1110, contour level = 0.0030265 |
| 17491 | | |
| 17492 | | Position of copy of hArf1_P84078 (#40) relative to postprocess_20231221.mrc |
| 17493 | | (#36) coordinates: |
| 17494 | | Matrix rotation and translation |
| 17495 | | 0.15742199 0.02369701 0.98724706 126.73234874 |
| 17496 | | -0.68705342 -0.71547020 0.12672797 200.58268382 |
| 17497 | | 0.70934893 -0.69824124 -0.09634963 178.39488616 |
| 17498 | | Axis -0.73407699 0.24728028 -0.63244243 |
| 17499 | | Axis point 0.00000000 138.30427469 -15.50378424 |
| 17500 | | Rotation angle (degrees) 145.81206601 |
| 17501 | | Shift along axis -156.25565426 |
| 17502 | | |
| 17503 | | |
| 17504 | | > hide #40 models |
| 17505 | | |
| 17506 | | > show #41 models |
| 17507 | | |
| 17508 | | > fitmap #41 inMap #36 |
| 17509 | | |
| 17510 | | Fit molecule copy of hArf1_P84078 (#41) to map postprocess_20231221.mrc (#36) |
| 17511 | | using 1457 atoms |
| 17512 | | average map value = 0.003766, steps = 88 |
| 17513 | | shifted from previous position = 10.7 |
| 17514 | | rotated from previous position = 6.8 degrees |
| 17515 | | atoms outside contour = 532, contour level = 0.0030265 |
| 17516 | | |
| 17517 | | Position of copy of hArf1_P84078 (#41) relative to postprocess_20231221.mrc |
| 17518 | | (#36) coordinates: |
| 17519 | | Matrix rotation and translation |
| 17520 | | -0.84461824 -0.49418058 0.20592611 243.00926717 |
| 17521 | | -0.47655890 0.51872551 -0.70979958 195.94109169 |
| 17522 | | 0.24395004 -0.69764560 -0.67363118 220.56590457 |
| 17523 | | Axis 0.27853378 -0.87139781 0.40383759 |
| 17524 | | Axis point 151.40382868 0.00000000 157.23174396 |
| 17525 | | Rotation angle (degrees) 178.74983418 |
| 17526 | | Shift along axis -13.98354622 |
| 17527 | | |
| 17528 | | |
| 17529 | | > hide #41 models |
| 17530 | | |
| 17531 | | > show #42 models |
| 17532 | | |
| 17533 | | > fitmap #42 inMap #36 |
| 17534 | | |
| 17535 | | Fit molecule copy of CopBprime_O55029.pdb (#42) to map |
| 17536 | | postprocess_20231221.mrc (#36) using 7214 atoms |
| 17537 | | average map value = 0.003119, steps = 68 |
| 17538 | | shifted from previous position = 9.07 |
| 17539 | | rotated from previous position = 6.89 degrees |
| 17540 | | atoms outside contour = 3621, contour level = 0.0030265 |
| 17541 | | |
| 17542 | | Position of copy of CopBprime_O55029.pdb (#42) relative to |
| 17543 | | postprocess_20231221.mrc (#36) coordinates: |
| 17544 | | Matrix rotation and translation |
| 17545 | | -0.16246064 -0.17528673 -0.97102065 188.51851661 |
| 17546 | | -0.01449850 -0.98356401 0.17997676 177.39518336 |
| 17547 | | -0.98660850 0.04331748 0.15724905 238.53639541 |
| 17548 | | Axis -0.64585918 0.07366904 0.75989393 |
| 17549 | | Axis point 189.62403960 85.35112764 0.00000000 |
| 17550 | | Rotation angle (degrees) 173.92694201 |
| 17551 | | Shift along axis 72.57447712 |
| 17552 | | |
| 17553 | | |
| 17554 | | > hide #42 models |
| 17555 | | |
| 17556 | | > show #43 models |
| 17557 | | |
| 17558 | | > fitmap #43 inMap #36 |
| 17559 | | |
| 17560 | | Fit molecule copy of CopD_Q5XJY5 (#43) to map postprocess_20231221.mrc (#36) |
| 17561 | | using 1462 atoms |
| 17562 | | average map value = 0.003728, steps = 140 |
| 17563 | | shifted from previous position = 9.62 |
| 17564 | | rotated from previous position = 6.81 degrees |
| 17565 | | atoms outside contour = 777, contour level = 0.0030265 |
| 17566 | | |
| 17567 | | Position of copy of CopD_Q5XJY5 (#43) relative to postprocess_20231221.mrc |
| 17568 | | (#36) coordinates: |
| 17569 | | Matrix rotation and translation |
| 17570 | | 0.24062811 0.93088816 0.27485514 -92.64681410 |
| 17571 | | -0.88598994 0.09501323 0.45386598 105.35990271 |
| 17572 | | 0.39638359 -0.35273180 0.84762040 472.60767797 |
| 17573 | | Axis -0.40500272 -0.06102094 -0.91227696 |
| 17574 | | Axis point -102.59394014 189.88709015 0.00000000 |
| 17575 | | Rotation angle (degrees) 84.74256338 |
| 17576 | | Shift along axis -400.05604309 |
| 17577 | | |
| 17578 | | |
| 17579 | | > hide #43 models |
| 17580 | | |
| 17581 | | > show #!44 models |
| 17582 | | |
| 17583 | | > fitmap #44 inMap #36 |
| 17584 | | |
| 17585 | | Fit molecule copy of CopG_Q9QZE5 (#44) to map postprocess_20231221.mrc (#36) |
| 17586 | | using 6673 atoms |
| 17587 | | average map value = 0.002534, steps = 92 |
| 17588 | | shifted from previous position = 9.06 |
| 17589 | | rotated from previous position = 9.53 degrees |
| 17590 | | atoms outside contour = 4985, contour level = 0.0030265 |
| 17591 | | |
| 17592 | | Position of copy of CopG_Q9QZE5 (#44) relative to postprocess_20231221.mrc |
| 17593 | | (#36) coordinates: |
| 17594 | | Matrix rotation and translation |
| 17595 | | 0.40005308 -0.55524456 -0.72915088 215.30512143 |
| 17596 | | 0.52653340 -0.51194577 0.67872977 279.23758458 |
| 17597 | | -0.75014673 -0.65545023 0.08754932 253.06944842 |
| 17598 | | Axis -0.77669476 0.01222276 0.62975856 |
| 17599 | | Axis point 0.00000000 234.86750685 111.70141084 |
| 17600 | | Rotation angle (degrees) 120.80859332 |
| 17601 | | Shift along axis -4.44065446 |
| 17602 | | |
| 17603 | | |
| 17604 | | > select add #44 |
| 17605 | | |
| 17606 | | 6673 atoms, 6786 bonds, 1 pseudobond, 853 residues, 2 models selected |
| 17607 | | |
| 17608 | | > view matrix models |
| 17609 | | > #44,-0.54249,0.72294,-0.42786,276.64,-0.52141,-0.68911,-0.50325,508.31,-0.65866,-0.049913,0.75078,290.34 |
| 17610 | | |
| 17611 | | > view matrix models |
| 17612 | | > #44,-0.54249,0.72294,-0.42786,275.6,-0.52141,-0.68911,-0.50325,508.32,-0.65866,-0.049913,0.75078,293.31 |
| 17613 | | |
| 17614 | | > view matrix models |
| 17615 | | > #44,-0.54249,0.72294,-0.42786,274.02,-0.52141,-0.68911,-0.50325,508.16,-0.65866,-0.049913,0.75078,290.2 |
| 17616 | | |
| 17617 | | > fitmap #44 inMap #36 |
| 17618 | | |
| 17619 | | Fit molecule copy of CopG_Q9QZE5 (#44) to map postprocess_20231221.mrc (#36) |
| 17620 | | using 6673 atoms |
| 17621 | | average map value = 0.003524, steps = 76 |
| 17622 | | shifted from previous position = 4.31 |
| 17623 | | rotated from previous position = 6.7 degrees |
| 17624 | | atoms outside contour = 4080, contour level = 0.0030265 |
| 17625 | | |
| 17626 | | Position of copy of CopG_Q9QZE5 (#44) relative to postprocess_20231221.mrc |
| 17627 | | (#36) coordinates: |
| 17628 | | Matrix rotation and translation |
| 17629 | | 0.48873828 -0.51173168 -0.70658728 223.57146441 |
| 17630 | | 0.54915305 -0.44888212 0.70493671 282.28090605 |
| 17631 | | -0.67791285 -0.73255411 0.06163313 258.74031676 |
| 17632 | | Axis -0.80450267 -0.01604786 0.59373220 |
| 17633 | | Axis point 0.00000000 245.04131525 103.90846134 |
| 17634 | | Rotation angle (degrees) 116.69591826 |
| 17635 | | Shift along axis -30.77138760 |
| 17636 | | |
| 17637 | | |
| 17638 | | > select subtract #44 |
| 17639 | | |
| 17640 | | Nothing selected |
| 17641 | | |
| 17642 | | > hide #!44 models |
| 17643 | | |
| 17644 | | > show #45 models |
| 17645 | | |
| 17646 | | > fitmap #45 inMap #36 |
| 17647 | | |
| 17648 | | Fit molecule copy of CopZ1_P61924.pdb (#45) to map postprocess_20231221.mrc |
| 17649 | | (#36) using 1420 atoms |
| 17650 | | average map value = 0.003139, steps = 104 |
| 17651 | | shifted from previous position = 8.48 |
| 17652 | | rotated from previous position = 29.9 degrees |
| 17653 | | atoms outside contour = 854, contour level = 0.0030265 |
| 17654 | | |
| 17655 | | Position of copy of CopZ1_P61924.pdb (#45) relative to |
| 17656 | | postprocess_20231221.mrc (#36) coordinates: |
| 17657 | | Matrix rotation and translation |
| 17658 | | -0.19312389 -0.97513519 0.10869470 219.27432926 |
| 17659 | | -0.46343472 -0.00698820 -0.88610351 243.25864960 |
| 17660 | | 0.86483029 -0.22150066 -0.45056191 224.06719709 |
| 17661 | | Axis 0.58851864 -0.66957264 0.45312062 |
| 17662 | | Axis point 171.87035679 0.00000000 235.79200882 |
| 17663 | | Rotation angle (degrees) 145.62267285 |
| 17664 | | Shift along axis 67.69716150 |
| 17665 | | |
| 17666 | | |
| 17667 | | > show #!44 models |
| 17668 | | |
| 17669 | | > hide #45 models |
| 17670 | | |
| 17671 | | > show #46 models |
| 17672 | | |
| 17673 | | > fitmap #46 inMap #36 |
| 17674 | | |
| 17675 | | Fit molecule copy of Golph3_ Q9CRA5.pdb (#46) to map postprocess_20231221.mrc |
| 17676 | | (#36) using 2367 atoms |
| 17677 | | average map value = 0.002823, steps = 76 |
| 17678 | | shifted from previous position = 5.55 |
| 17679 | | rotated from previous position = 14.9 degrees |
| 17680 | | atoms outside contour = 1509, contour level = 0.0030265 |
| 17681 | | |
| 17682 | | Position of copy of Golph3_ Q9CRA5.pdb (#46) relative to |
| 17683 | | postprocess_20231221.mrc (#36) coordinates: |
| 17684 | | Matrix rotation and translation |
| 17685 | | 0.79431459 -0.32721850 0.51185192 187.88383847 |
| 17686 | | -0.58325392 -0.64644449 0.49185809 240.20045784 |
| 17687 | | 0.16993879 -0.68922969 -0.70433177 189.10441435 |
| 17688 | | Axis -0.94038898 0.27223323 -0.20385690 |
| 17689 | | Axis point 0.00000000 177.06737384 21.42638812 |
| 17690 | | Rotation angle (degrees) 141.09887643 |
| 17691 | | Shift along axis -149.84358522 |
| 17692 | | |
| 17693 | | |
| 17694 | | > show #45 models |
| 17695 | | |
| 17696 | | > show #42 models |
| 17697 | | |
| 17698 | | > show #39 models |
| 17699 | | |
| 17700 | | > select add #46 |
| 17701 | | |
| 17702 | | 2367 atoms, 2398 bonds, 298 residues, 1 model selected |
| 17703 | | |
| 17704 | | > view matrix models |
| 17705 | | > #46,0.35897,0.64467,-0.67493,336.48,0.76027,-0.62144,-0.18921,453.81,-0.54141,-0.44521,-0.71321,260.42 |
| 17706 | | |
| 17707 | | > fitmap #46 inMap #36 |
| 17708 | | |
| 17709 | | Fit molecule copy of Golph3_ Q9CRA5.pdb (#46) to map postprocess_20231221.mrc |
| 17710 | | (#36) using 2367 atoms |
| 17711 | | average map value = 0.0031, steps = 52 |
| 17712 | | shifted from previous position = 4.91 |
| 17713 | | rotated from previous position = 6.88 degrees |
| 17714 | | atoms outside contour = 1162, contour level = 0.0030265 |
| 17715 | | |
| 17716 | | Position of copy of Golph3_ Q9CRA5.pdb (#46) relative to |
| 17717 | | postprocess_20231221.mrc (#36) coordinates: |
| 17718 | | Matrix rotation and translation |
| 17719 | | 0.66037595 -0.23675098 0.71263775 198.05026413 |
| 17720 | | -0.68947043 -0.56718583 0.45047837 233.24072072 |
| 17721 | | 0.29754684 -0.78882774 -0.53778868 191.34190837 |
| 17722 | | Axis -0.89599540 0.30010305 -0.32730779 |
| 17723 | | Axis point 0.00000000 180.18876170 -4.20452047 |
| 17724 | | Rotation angle (degrees) 136.24464100 |
| 17725 | | Shift along axis -170.08357163 |
| 17726 | | |
| 17727 | | |
| 17728 | | > view matrix models |
| 17729 | | > #46,0.41891,0.69152,-0.58848,335.36,0.77647,-0.6088,-0.16266,460.88,-0.47076,-0.3888,-0.79198,263.13 |
| 17730 | | |
| 17731 | | > fitmap #46 inMap #36 |
| 17732 | | |
| 17733 | | Fit molecule copy of Golph3_ Q9CRA5.pdb (#46) to map postprocess_20231221.mrc |
| 17734 | | (#36) using 2367 atoms |
| 17735 | | average map value = 0.0031, steps = 56 |
| 17736 | | shifted from previous position = 2.95 |
| 17737 | | rotated from previous position = 0.00789 degrees |
| 17738 | | atoms outside contour = 1162, contour level = 0.0030265 |
| 17739 | | |
| 17740 | | Position of copy of Golph3_ Q9CRA5.pdb (#46) relative to |
| 17741 | | postprocess_20231221.mrc (#36) coordinates: |
| 17742 | | Matrix rotation and translation |
| 17743 | | 0.66037772 -0.23664993 0.71266968 198.05732277 |
| 17744 | | -0.68946744 -0.56712690 0.45055712 233.24780532 |
| 17745 | | 0.29754984 -0.78890043 -0.53768040 191.34677433 |
| 17746 | | Axis -0.89599058 0.30008569 -0.32733693 |
| 17747 | | Axis point 0.00000000 180.19619821 -4.22028621 |
| 17748 | | Rotation angle (degrees) 136.23764146 |
| 17749 | | Shift along axis -170.09803316 |
| 17750 | | |
| 17751 | | |
| 17752 | | > select subtract #46 |
| 17753 | | |
| 17754 | | Nothing selected |
| 17755 | | |
| 17756 | | > show #47 models |
| 17757 | | |
| 17758 | | > fitmap #47 inMap #36 |
| 17759 | | |
| 17760 | | Fit molecule copy of CopZ2_Q9CTG7.pdb (#47) to map postprocess_20231221.mrc |
| 17761 | | (#36) using 1463 atoms |
| 17762 | | average map value = 0.003008, steps = 216 |
| 17763 | | shifted from previous position = 3.73 |
| 17764 | | rotated from previous position = 28.5 degrees |
| 17765 | | atoms outside contour = 927, contour level = 0.0030265 |
| 17766 | | |
| 17767 | | Position of copy of CopZ2_Q9CTG7.pdb (#47) relative to |
| 17768 | | postprocess_20231221.mrc (#36) coordinates: |
| 17769 | | Matrix rotation and translation |
| 17770 | | -0.75920760 0.13719007 -0.63622538 218.32062358 |
| 17771 | | 0.53125651 0.69534164 -0.48401089 247.76162545 |
| 17772 | | 0.37599251 -0.70546362 -0.60079177 221.17327703 |
| 17773 | | Axis -0.19976535 -0.91308905 0.35547460 |
| 17774 | | Axis point 34.16127640 0.00000000 188.65130694 |
| 17775 | | Rotation angle (degrees) 146.33871613 |
| 17776 | | Shift along axis -191.21983958 |
| 17777 | | |
| 17778 | | |
| 17779 | | > hide #46 models |
| 17780 | | |
| 17781 | | > hide #42 models |
| 17782 | | |
| 17783 | | > hide #39 models |
| 17784 | | |
| 17785 | | > hide #!44 models |
| 17786 | | |
| 17787 | | > hide #!36 models |
| 17788 | | |
| 17789 | | > hide #45 models |
| 17790 | | |
| 17791 | | > show #45 models |
| 17792 | | |
| 17793 | | > hide #45 models |
| 17794 | | |
| 17795 | | > show #45 models |
| 17796 | | |
| 17797 | | > hide #47 models |
| 17798 | | |
| 17799 | | > show #47 models |
| 17800 | | |
| 17801 | | > show #!36 models |
| 17802 | | |
| 17803 | | > select add #45 |
| 17804 | | |
| 17805 | | 1420 atoms, 1441 bonds, 177 residues, 1 model selected |
| 17806 | | |
| 17807 | | > view matrix models |
| 17808 | | > #45,0.4074,0.32856,0.8521,316.64,0.70835,-0.70261,-0.067753,494.43,0.57643,0.63118,-0.51898,268.19 |
| 17809 | | |
| 17810 | | > ui mousemode right "rotate selected models" |
| 17811 | | |
| 17812 | | > view matrix models |
| 17813 | | > #45,0.79491,0.36438,0.48513,316.27,0.60345,-0.3917,-0.69457,491.62,-0.063061,0.84487,-0.53124,266.32 |
| 17814 | | |
| 17815 | | > hide #!36 models |
| 17816 | | |
| 17817 | | > view matrix models |
| 17818 | | > #45,-0.68784,-0.39482,0.60909,305.75,0.71782,-0.24549,0.65151,501.79,-0.1077,0.88535,0.45227,272.76 |
| 17819 | | |
| 17820 | | > view matrix models |
| 17821 | | > #45,0.50044,0.61601,-0.60835,309.18,-0.77781,0.6285,-0.003429,495.47,0.38023,0.47489,0.79366,274.94 |
| 17822 | | |
| 17823 | | > view matrix models |
| 17824 | | > #45,0.9407,0.30741,-0.14344,312.53,-0.27614,0.93953,0.20257,500.95,0.19704,-0.15095,0.96871,271.64 |
| 17825 | | |
| 17826 | | > view matrix models |
| 17827 | | > #45,0.72804,0.66597,-0.1626,313.45,-0.59249,0.73058,0.33941,499.16,0.34484,-0.15076,0.92648,272.07 |
| 17828 | | |
| 17829 | | > ui mousemode right "translate selected models" |
| 17830 | | |
| 17831 | | > view matrix models |
| 17832 | | > #45,0.72804,0.66597,-0.1626,316.84,-0.59249,0.73058,0.33941,491.65,0.34484,-0.15076,0.92648,265.94 |
| 17833 | | |
| 17834 | | > view matrix models |
| 17835 | | > #45,0.72804,0.66597,-0.1626,277.83,-0.59249,0.73058,0.33941,464.15,0.34484,-0.15076,0.92648,270.44 |
| 17836 | | |
| 17837 | | > ui mousemode right "rotate selected models" |
| 17838 | | |
| 17839 | | > view matrix models |
| 17840 | | > #45,0.75372,0.077138,-0.65266,271.38,-0.087009,0.99606,0.017242,465.95,0.65141,0.043791,0.75746,271.89 |
| 17841 | | |
| 17842 | | > view matrix models |
| 17843 | | > #45,0.21111,0.22417,-0.95141,267.72,-0.34854,0.92663,0.14099,465.13,0.91321,0.30184,0.27375,271.44 |
| 17844 | | |
| 17845 | | > ui mousemode right "translate selected models" |
| 17846 | | |
| 17847 | | > view matrix models |
| 17848 | | > #45,0.21111,0.22417,-0.95141,317.53,-0.34854,0.92663,0.14099,489.65,0.91321,0.30184,0.27375,262.41 |
| 17849 | | |
| 17850 | | > ui mousemode right "rotate selected models" |
| 17851 | | |
| 17852 | | > view matrix models |
| 17853 | | > #45,0.1589,0.17637,-0.97141,316.88,-0.30489,0.94459,0.12163,489.83,0.93904,0.27685,0.20387,261.93 |
| 17854 | | |
| 17855 | | > view matrix models |
| 17856 | | > #45,0.14542,0.17996,-0.97287,316.83,-0.35891,0.92593,0.11763,489.45,0.92198,0.33206,0.19924,262.14 |
| 17857 | | |
| 17858 | | > fitmap #45 inMap #36 |
| 17859 | | |
| 17860 | | Fit molecule copy of CopZ1_P61924.pdb (#45) to map postprocess_20231221.mrc |
| 17861 | | (#36) using 1420 atoms |
| 17862 | | average map value = 0.003112, steps = 264 |
| 17863 | | shifted from previous position = 10.9 |
| 17864 | | rotated from previous position = 21 degrees |
| 17865 | | atoms outside contour = 847, contour level = 0.0030265 |
| 17866 | | |
| 17867 | | Position of copy of CopZ1_P61924.pdb (#45) relative to |
| 17868 | | postprocess_20231221.mrc (#36) coordinates: |
| 17869 | | Matrix rotation and translation |
| 17870 | | -0.97399447 0.16527494 -0.15498057 229.35705387 |
| 17871 | | -0.19245837 -0.24256250 0.95085394 236.35581998 |
| 17872 | | 0.11955986 0.95595379 0.26806307 215.40502985 |
| 17873 | | Axis 0.01130869 -0.60878112 -0.79325763 |
| 17874 | | Axis point 119.54809377 18.75677209 0.00000000 |
| 17875 | | Rotation angle (degrees) 166.96867783 |
| 17876 | | Shift along axis -312.16691678 |
| 17877 | | |
| 17878 | | |
| 17879 | | > view matrix models |
| 17880 | | > #45,-0.016061,-0.046823,-0.99877,317.94,-0.4539,0.89039,-0.034443,493.68,0.89091,0.45279,-0.035553,250.87 |
| 17881 | | |
| 17882 | | > view matrix models |
| 17883 | | > #45,0.53836,0.34142,-0.77046,324.27,-0.72404,0.6552,-0.21559,489.87,0.43119,0.67391,0.59993,254.12 |
| 17884 | | |
| 17885 | | > ui mousemode right "translate selected models" |
| 17886 | | |
| 17887 | | > view matrix models |
| 17888 | | > #45,0.53836,0.34142,-0.77046,311.26,-0.72404,0.6552,-0.21559,488.89,0.43119,0.67391,0.59993,258.16 |
| 17889 | | |
| 17890 | | > fitmap #45 inMap #36 |
| 17891 | | |
| 17892 | | Fit molecule copy of CopZ1_P61924.pdb (#45) to map postprocess_20231221.mrc |
| 17893 | | (#36) using 1420 atoms |
| 17894 | | average map value = 0.003331, steps = 176 |
| 17895 | | shifted from previous position = 6.2 |
| 17896 | | rotated from previous position = 30.9 degrees |
| 17897 | | atoms outside contour = 809, contour level = 0.0030265 |
| 17898 | | |
| 17899 | | Position of copy of CopZ1_P61924.pdb (#45) relative to |
| 17900 | | postprocess_20231221.mrc (#36) coordinates: |
| 17901 | | Matrix rotation and translation |
| 17902 | | -0.95696738 0.07482187 -0.28038391 229.42312978 |
| 17903 | | -0.25013758 -0.70250991 0.66626648 241.55633226 |
| 17904 | | -0.14712117 0.70772984 0.69099483 216.75579486 |
| 17905 | | Axis 0.11724008 -0.37680819 -0.91884185 |
| 17906 | | Axis point 135.44318294 63.71073576 0.00000000 |
| 17907 | | Rotation angle (degrees) 169.81477120 |
| 17908 | | Shift along axis -263.28711378 |
| 17909 | | |
| 17910 | | |
| 17911 | | > view matrix models |
| 17912 | | > #45,0.54529,0.56789,-0.61658,313.54,-0.56934,0.79077,0.22481,490.72,0.61523,0.22846,0.75452,269.69 |
| 17913 | | |
| 17914 | | > view matrix models |
| 17915 | | > #45,0.54529,0.56789,-0.61658,309.86,-0.56934,0.79077,0.22481,489.44,0.61523,0.22846,0.75452,268.59 |
| 17916 | | |
| 17917 | | > fitmap #45 inMap #36 |
| 17918 | | |
| 17919 | | Fit molecule copy of CopZ1_P61924.pdb (#45) to map postprocess_20231221.mrc |
| 17920 | | (#36) using 1420 atoms |
| 17921 | | average map value = 0.003341, steps = 124 |
| 17922 | | shifted from previous position = 7.88 |
| 17923 | | rotated from previous position = 26.7 degrees |
| 17924 | | atoms outside contour = 848, contour level = 0.0030265 |
| 17925 | | |
| 17926 | | Position of copy of CopZ1_P61924.pdb (#45) relative to |
| 17927 | | postprocess_20231221.mrc (#36) coordinates: |
| 17928 | | Matrix rotation and translation |
| 17929 | | -0.79262455 -0.25965120 -0.55165895 225.82439325 |
| 17930 | | -0.24029440 -0.69852575 0.67403292 252.43242993 |
| 17931 | | -0.56036143 0.66681560 0.49127593 221.81898659 |
| 17932 | | Axis -0.32196172 0.38821440 0.86349883 |
| 17933 | | Axis point 153.71958293 77.31257138 0.00000000 |
| 17934 | | Rotation angle (degrees) 179.35779522 |
| 17935 | | Shift along axis 216.83152997 |
| 17936 | | |
| 17937 | | |
| 17938 | | > show #!36 models |
| 17939 | | |
| 17940 | | > show #!44 models |
| 17941 | | |
| 17942 | | > select add #47 |
| 17943 | | |
| 17944 | | 2883 atoms, 2927 bonds, 362 residues, 2 models selected |
| 17945 | | |
| 17946 | | > view matrix models |
| 17947 | | > #45,0.52874,0.67089,-0.51995,316.75,-0.8131,0.5761,-0.083515,491.76,0.24351,0.46693,0.85011,253.88,#47,-0.30922,-0.62631,0.71562,323.54,-0.25028,-0.67238,-0.69661,488.42,0.91746,-0.39451,0.051161,258.49 |
| 17948 | | |
| 17949 | | > fitmap #45 inMap #36 |
| 17950 | | |
| 17951 | | Fit molecule copy of CopZ1_P61924.pdb (#45) to map postprocess_20231221.mrc |
| 17952 | | (#36) using 1420 atoms |
| 17953 | | average map value = 0.003331, steps = 92 |
| 17954 | | shifted from previous position = 0.699 |
| 17955 | | rotated from previous position = 26.7 degrees |
| 17956 | | atoms outside contour = 809, contour level = 0.0030265 |
| 17957 | | |
| 17958 | | Position of copy of CopZ1_P61924.pdb (#45) relative to |
| 17959 | | postprocess_20231221.mrc (#36) coordinates: |
| 17960 | | Matrix rotation and translation |
| 17961 | | -0.95696052 0.07496574 -0.28036889 229.41857606 |
| 17962 | | -0.25020565 -0.70260268 0.66614309 241.55647631 |
| 17963 | | -0.14705002 0.70762252 0.69111987 216.76484984 |
| 17964 | | Axis 0.11721334 -0.37673492 -0.91887531 |
| 17965 | | Axis point 135.44275251 63.71231097 0.00000000 |
| 17966 | | Rotation angle (degrees) 169.80843248 |
| 17967 | | Shift along axis -263.29170978 |
| 17968 | | |
| 17969 | | |
| 17970 | | > fitmap #47 inMap #36 |
| 17971 | | |
| 17972 | | Fit molecule copy of CopZ2_Q9CTG7.pdb (#47) to map postprocess_20231221.mrc |
| 17973 | | (#36) using 1463 atoms |
| 17974 | | average map value = 0.003943, steps = 116 |
| 17975 | | shifted from previous position = 11.6 |
| 17976 | | rotated from previous position = 25 degrees |
| 17977 | | atoms outside contour = 662, contour level = 0.0030265 |
| 17978 | | |
| 17979 | | Position of copy of CopZ2_Q9CTG7.pdb (#47) relative to |
| 17980 | | postprocess_20231221.mrc (#36) coordinates: |
| 17981 | | Matrix rotation and translation |
| 17982 | | -0.81884158 0.29473455 -0.49257492 229.57710348 |
| 17983 | | 0.42640479 0.88680121 -0.17822064 242.04313745 |
| 17984 | | 0.38428825 -0.35597078 -0.85182591 217.26590072 |
| 17985 | | Axis -0.19655349 -0.96962243 0.14559902 |
| 17986 | | Axis point 59.02633770 0.00000000 149.08741108 |
| 17987 | | Rotation angle (degrees) 153.11717756 |
| 17988 | | Shift along axis -248.18093319 |
| 17989 | | |
| 17990 | | |
| 17991 | | > hide #!44 models |
| 17992 | | |
| 17993 | | > hide #!36 models |
| 17994 | | |
| 17995 | | > hide #45 models |
| 17996 | | |
| 17997 | | > select subtract #45 |
| 17998 | | |
| 17999 | | 1463 atoms, 1486 bonds, 185 residues, 1 model selected |
| 18000 | | |
| 18001 | | > hide #47 models |
| 18002 | | |
| 18003 | | > select subtract #47 |
| 18004 | | |
| 18005 | | Nothing selected |
| 18006 | | |
| 18007 | | > show #!13 models |
| 18008 | | |
| 18009 | | > color #13 #b2b2b288 models |
| 18010 | | |
| 18011 | | > color #13 #b2b2b287 models |
| 18012 | | |
| 18013 | | > hide #!13 models |
| 18014 | | |
| 18015 | | > show #!13 models |
| 18016 | | |
| 18017 | | > show #!1 models |
| 18018 | | |
| 18019 | | > show #!24 models |
| 18020 | | |
| 18021 | | > color #13 #d6d6d6ff models |
| 18022 | | |
| 18023 | | > color #13 darkgrey models |
| 18024 | | |
| 18025 | | > color #13 #a9a9a980 models |
| 18026 | | |
| 18027 | | > hide #!13 models |
| 18028 | | |
| 18029 | | > color #1 #c0c0c0e5 models |
| 18030 | | |
| 18031 | | > color #1 #c0c0c0e6 models |
| 18032 | | |
| 18033 | | > color #1 #d6d6d6ff models |
| 18034 | | |
| 18035 | | > color #1 #d6d6d6d8 models |
| 18036 | | |
| 18037 | | > hide #!1 models |
| 18038 | | |
| 18039 | | > color #1 #d6d6d6d9 models |
| 18040 | | |
| 18041 | | > color #24 #d6d6d6db models |
| 18042 | | |
| 18043 | | > color #24 #d6d6d6d8 models |
| 18044 | | |
| 18045 | | > hide #!24 models |
| 18046 | | |
| 18047 | | > color #24 #d6d6d6d9 models |
| 18048 | | |
| 18049 | | > show #!1 models |
| 18050 | | |
| 18051 | | > show #!13 models |
| 18052 | | |
| 18053 | | > show #!24 models |
| 18054 | | |
| 18055 | | > show #!36 models |
| 18056 | | |
| 18057 | | > color #36 #d6d6d6ff models |
| 18058 | | |
| 18059 | | > color #36 #d6d6d6f4 models |
| 18060 | | |
| 18061 | | > color #36 #d6d6d6d9 models |
| 18062 | | |
| 18063 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 18064 | | > dataset/Chimera sessions/20240125_linkage_1_fitting_final.cxs" |
| 18065 | | |
| 18066 | | > hide #!36 models |
| 18067 | | |
| 18068 | | > show #!36 models |
| 18069 | | |
| 18070 | | > hide #!36 models |
| 18071 | | |
| 18072 | | > hide #!24 models |
| 18073 | | |
| 18074 | | > hide #!13 models |
| 18075 | | |
| 18076 | | > show #!13 models |
| 18077 | | |
| 18078 | | > hide #!1 models |
| 18079 | | |
| 18080 | | > select add #3 |
| 18081 | | |
| 18082 | | 9810 atoms, 10032 bonds, 1233 residues, 1 model selected |
| 18083 | | |
| 18084 | | > select subtract #3 |
| 18085 | | |
| 18086 | | Nothing selected |
| 18087 | | |
| 18088 | | > show #3 models |
| 18089 | | |
| 18090 | | > show #4 models |
| 18091 | | |
| 18092 | | > show #5 models |
| 18093 | | |
| 18094 | | > show #6 models |
| 18095 | | |
| 18096 | | > show #7 models |
| 18097 | | |
| 18098 | | > show #8 models |
| 18099 | | |
| 18100 | | > show #!9 models |
| 18101 | | |
| 18102 | | > show #10 models |
| 18103 | | |
| 18104 | | > show #11 models |
| 18105 | | |
| 18106 | | > show #12 models |
| 18107 | | |
| 18108 | | > show #26 models |
| 18109 | | |
| 18110 | | > show #27 models |
| 18111 | | |
| 18112 | | > show #28 models |
| 18113 | | |
| 18114 | | > show #29 models |
| 18115 | | |
| 18116 | | > show #30 models |
| 18117 | | |
| 18118 | | > show #31 models |
| 18119 | | |
| 18120 | | > show #!32 models |
| 18121 | | |
| 18122 | | > show #33 models |
| 18123 | | |
| 18124 | | > show #34 models |
| 18125 | | |
| 18126 | | > show #35 models |
| 18127 | | |
| 18128 | | > show #38 models |
| 18129 | | |
| 18130 | | > show #39 models |
| 18131 | | |
| 18132 | | > show #40 models |
| 18133 | | |
| 18134 | | > show #41 models |
| 18135 | | |
| 18136 | | > show #42 models |
| 18137 | | |
| 18138 | | > show #43 models |
| 18139 | | |
| 18140 | | > show #!44 models |
| 18141 | | |
| 18142 | | > show #45 models |
| 18143 | | |
| 18144 | | > show #46 models |
| 18145 | | |
| 18146 | | > show #47 models |
| 18147 | | |
| 18148 | | > hide #47 models |
| 18149 | | |
| 18150 | | > hide #46 models |
| 18151 | | |
| 18152 | | > hide #45 models |
| 18153 | | |
| 18154 | | > hide #!44 models |
| 18155 | | |
| 18156 | | > hide #43 models |
| 18157 | | |
| 18158 | | > hide #42 models |
| 18159 | | |
| 18160 | | > hide #41 models |
| 18161 | | |
| 18162 | | > hide #40 models |
| 18163 | | |
| 18164 | | > hide #39 models |
| 18165 | | |
| 18166 | | > hide #38 models |
| 18167 | | |
| 18168 | | > hide #35 models |
| 18169 | | |
| 18170 | | > hide #34 models |
| 18171 | | |
| 18172 | | > hide #33 models |
| 18173 | | |
| 18174 | | > hide #!32 models |
| 18175 | | |
| 18176 | | > hide #31 models |
| 18177 | | |
| 18178 | | > hide #30 models |
| 18179 | | |
| 18180 | | > hide #29 models |
| 18181 | | |
| 18182 | | > hide #28 models |
| 18183 | | |
| 18184 | | > hide #27 models |
| 18185 | | |
| 18186 | | > hide #26 models |
| 18187 | | |
| 18188 | | > hide #!13 models |
| 18189 | | |
| 18190 | | > hide #12 models |
| 18191 | | |
| 18192 | | > hide #11 models |
| 18193 | | |
| 18194 | | > hide #10 models |
| 18195 | | |
| 18196 | | > hide #!9 models |
| 18197 | | |
| 18198 | | > hide #8 models |
| 18199 | | |
| 18200 | | > hide #7 models |
| 18201 | | |
| 18202 | | > hide #6 models |
| 18203 | | |
| 18204 | | > hide #5 models |
| 18205 | | |
| 18206 | | > hide #4 models |
| 18207 | | |
| 18208 | | > hide #3 models |
| 18209 | | |
| 18210 | | > show #!16 models |
| 18211 | | |
| 18212 | | > show #!13 models |
| 18213 | | |
| 18214 | | > hide #!13 models |
| 18215 | | |
| 18216 | | > show #!1 models |
| 18217 | | |
| 18218 | | > hide #!1 models |
| 18219 | | |
| 18220 | | > show #!1 models |
| 18221 | | |
| 18222 | | > hide #!1 models |
| 18223 | | |
| 18224 | | > show #!1 models |
| 18225 | | |
| 18226 | | > show #!2 models |
| 18227 | | |
| 18228 | | > hide #!2 models |
| 18229 | | |
| 18230 | | > show #!2 models |
| 18231 | | |
| 18232 | | > hide #!2 models |
| 18233 | | |
| 18234 | | > show #!2 models |
| 18235 | | |
| 18236 | | > hide #!2 models |
| 18237 | | |
| 18238 | | > show #!2 models |
| 18239 | | |
| 18240 | | > hide #!1 models |
| 18241 | | |
| 18242 | | > show #!1 models |
| 18243 | | |
| 18244 | | > hide #!2 models |
| 18245 | | |
| 18246 | | > show #!2 models |
| 18247 | | |
| 18248 | | > hide #!2 models |
| 18249 | | |
| 18250 | | > hide #!1 models |
| 18251 | | |
| 18252 | | > show #!1 models |
| 18253 | | |
| 18254 | | > show #!2 models |
| 18255 | | |
| 18256 | | > hide #!2 models |
| 18257 | | |
| 18258 | | > hide #!1 models |
| 18259 | | |
| 18260 | | > show #!24 models |
| 18261 | | |
| 18262 | | > show #!25 models |
| 18263 | | |
| 18264 | | > hide #!25 models |
| 18265 | | |
| 18266 | | > hide #!24 models |
| 18267 | | |
| 18268 | | > show #!2 models |
| 18269 | | |
| 18270 | | > show #!1 models |
| 18271 | | |
| 18272 | | > hide #!16 models |
| 18273 | | |
| 18274 | | > show #!16 models |
| 18275 | | |
| 18276 | | > show #!25 models |
| 18277 | | |
| 18278 | | > select add #25 |
| 18279 | | |
| 18280 | | 2 models selected |
| 18281 | | |
| 18282 | | > view matrix models |
| 18283 | | > #25,-0.25541,-0.56476,-0.78473,231.87,0.73989,-0.63665,0.21738,257.28,-0.62236,-0.52509,0.58046,220.85 |
| 18284 | | |
| 18285 | | > ui mousemode right "rotate selected models" |
| 18286 | | |
| 18287 | | > view matrix models |
| 18288 | | > #25,0.48596,-0.11293,-0.86665,104.37,0.53215,0.82485,0.19091,109.7,0.6933,-0.55396,0.46094,90.472 |
| 18289 | | |
| 18290 | | > view matrix models |
| 18291 | | > #25,0.82708,0.11158,-0.55089,0.31623,0.081587,0.94589,0.31407,131,0.55613,-0.30471,0.77322,37.878 |
| 18292 | | |
| 18293 | | > view matrix models |
| 18294 | | > #25,0.82444,0.11315,-0.55453,0.87432,0.082749,0.94518,0.31588,130.73,0.55987,-0.30631,0.76988,38.057 |
| 18295 | | |
| 18296 | | > ui mousemode right "translate selected models" |
| 18297 | | |
| 18298 | | > view matrix models |
| 18299 | | > #25,0.82444,0.11315,-0.55453,73.432,0.082749,0.94518,0.31588,93.879,0.55987,-0.30631,0.76988,133.03 |
| 18300 | | |
| 18301 | | > view matrix models |
| 18302 | | > #25,0.82444,0.11315,-0.55453,67.782,0.082749,0.94518,0.31588,140.35,0.55987,-0.30631,0.76988,162.17 |
| 18303 | | |
| 18304 | | > view matrix models |
| 18305 | | > #25,0.82444,0.11315,-0.55453,73.036,0.082749,0.94518,0.31588,179.65,0.55987,-0.30631,0.76988,150.63 |
| 18306 | | |
| 18307 | | > view matrix models |
| 18308 | | > #25,0.82444,0.11315,-0.55453,118.32,0.082749,0.94518,0.31588,163.64,0.55987,-0.30631,0.76988,134.94 |
| 18309 | | |
| 18310 | | > view matrix models |
| 18311 | | > #25,0.82444,0.11315,-0.55453,117.72,0.082749,0.94518,0.31588,160.75,0.55987,-0.30631,0.76988,146.41 |
| 18312 | | |
| 18313 | | > ui mousemode right "rotate selected models" |
| 18314 | | |
| 18315 | | > view matrix models |
| 18316 | | > #25,0.82364,0.10196,-0.55788,119.56,0.0021836,0.98313,0.1829,181.65,0.56712,-0.15186,0.80952,122.31 |
| 18317 | | |
| 18318 | | > view matrix models |
| 18319 | | > #25,0.79503,0.0096224,-0.6065,139.77,0.047196,0.99586,0.077666,187.98,0.60473,-0.090371,0.79128,112.97 |
| 18320 | | |
| 18321 | | > ui mousemode right "translate selected models" |
| 18322 | | |
| 18323 | | > view matrix models |
| 18324 | | > #25,0.79503,0.0096224,-0.6065,134.71,0.047196,0.99586,0.077666,199.27,0.60473,-0.090371,0.79128,113.55 |
| 18325 | | |
| 18326 | | > fitmap #25 inMap #16 |
| 18327 | | |
| 18328 | | Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage2_postprocess.mrc |
| 18329 | | using 65799 points |
| 18330 | | correlation = 0.9339, correlation about mean = 0.1031, overlap = 7611 |
| 18331 | | steps = 84, shift = 13.5, angle = 15.7 degrees |
| 18332 | | |
| 18333 | | Position of emd_3720_2017_leaf.map (#25) relative to |
| 18334 | | COPI_golph_linkage2_postprocess.mrc (#16) coordinates: |
| 18335 | | Matrix rotation and translation |
| 18336 | | -0.62663805 0.62168576 0.46992723 287.56800331 |
| 18337 | | -0.68561197 -0.72646035 0.04681471 442.22538085 |
| 18338 | | 0.37048753 -0.29285185 0.88146288 198.63658823 |
| 18339 | | Axis -0.25079502 0.07342195 -0.96525182 |
| 18340 | | Axis point 210.77802438 182.28177259 0.00000000 |
| 18341 | | Rotation angle (degrees) 137.37636026 |
| 18342 | | Shift along axis -231.38590162 |
| 18343 | | |
| 18344 | | |
| 18345 | | > select subtract #25 |
| 18346 | | |
| 18347 | | Nothing selected |
| 18348 | | |
| 18349 | | > hide #!25 models |
| 18350 | | |
| 18351 | | > show #!25 models |
| 18352 | | |
| 18353 | | > hide #!25 models |
| 18354 | | |
| 18355 | | > show #!25 models |
| 18356 | | |
| 18357 | | > hide #!25 models |
| 18358 | | |
| 18359 | | > show #!25 models |
| 18360 | | |
| 18361 | | > show #!37 models |
| 18362 | | |
| 18363 | | > select add #37 |
| 18364 | | |
| 18365 | | 2 models selected |
| 18366 | | |
| 18367 | | > view matrix models |
| 18368 | | > #37,0.96381,0.24767,-0.098598,239.78,-0.077897,0.61539,0.78437,-105.76,0.25494,-0.7483,0.61241,152.57 |
| 18369 | | |
| 18370 | | > view matrix models |
| 18371 | | > #37,0.96381,0.24767,-0.098598,206.99,-0.077897,0.61539,0.78437,-72.23,0.25494,-0.7483,0.61241,245.22 |
| 18372 | | |
| 18373 | | > ui mousemode right "rotate selected models" |
| 18374 | | |
| 18375 | | > view matrix models |
| 18376 | | > #37,0.62202,0.64809,0.43939,134.33,-0.75268,0.64956,0.10744,79.983,-0.21578,-0.39756,0.89185,223.61 |
| 18377 | | |
| 18378 | | > view matrix models |
| 18379 | | > #37,0.40997,0.77171,0.4862,138.04,-0.81333,0.55057,-0.18806,133.56,-0.41281,-0.31834,0.85337,240.99 |
| 18380 | | |
| 18381 | | > view matrix models |
| 18382 | | > #37,-0.84937,0.16887,-0.50006,469.05,-0.46516,-0.6872,0.55802,153.96,-0.24941,0.70657,0.66223,122.6 |
| 18383 | | |
| 18384 | | > view matrix models |
| 18385 | | > #37,-0.73326,-0.67357,0.092966,486.56,0.66339,-0.73867,-0.11949,112.33,0.14915,-0.025941,0.98847,126.49 |
| 18386 | | |
| 18387 | | > view matrix models |
| 18388 | | > #37,-0.52084,-0.69936,-0.48951,534.35,0.74653,-0.65127,0.13615,62.304,-0.41402,-0.29452,0.8613,237.35 |
| 18389 | | |
| 18390 | | > view matrix models |
| 18391 | | > #37,-0.27139,-0.88159,-0.3862,515.69,0.9512,-0.3069,0.032134,10.266,-0.14685,-0.35863,0.92186,207.61 |
| 18392 | | |
| 18393 | | > view matrix models |
| 18394 | | > #37,-0.34905,-0.82794,-0.43895,524.3,0.93677,-0.29585,-0.18689,36.434,0.024876,-0.47643,0.87886,207.32 |
| 18395 | | |
| 18396 | | > ui mousemode right "translate selected models" |
| 18397 | | |
| 18398 | | > view matrix models |
| 18399 | | > #37,-0.34905,-0.82794,-0.43895,470.27,0.93677,-0.29585,-0.18689,114.81,0.024876,-0.47643,0.87886,182.01 |
| 18400 | | |
| 18401 | | > view matrix models |
| 18402 | | > #37,-0.34905,-0.82794,-0.43895,423.27,0.93677,-0.29585,-0.18689,129.66,0.024876,-0.47643,0.87886,211.07 |
| 18403 | | |
| 18404 | | > view matrix models |
| 18405 | | > #37,-0.34905,-0.82794,-0.43895,433.73,0.93677,-0.29585,-0.18689,115.37,0.024876,-0.47643,0.87886,224.56 |
| 18406 | | |
| 18407 | | > view matrix models |
| 18408 | | > #37,-0.34905,-0.82794,-0.43895,431.04,0.93677,-0.29585,-0.18689,123.32,0.024876,-0.47643,0.87886,227.92 |
| 18409 | | |
| 18410 | | > ui mousemode right "rotate selected models" |
| 18411 | | |
| 18412 | | > view matrix models |
| 18413 | | > #37,-0.56839,-0.71821,-0.40137,438.32,0.81856,-0.4444,-0.36398,175.35,0.083042,-0.53543,0.84049,232.92 |
| 18414 | | |
| 18415 | | > view matrix models |
| 18416 | | > #37,-0.63257,-0.6482,-0.4239,439.88,0.77066,-0.47237,-0.42772,191.64,0.077011,-0.59725,0.79835,245.96 |
| 18417 | | |
| 18418 | | > view matrix models |
| 18419 | | > #37,-0.6202,-0.62664,-0.47188,441.57,0.77532,-0.39822,-0.4902,189.63,0.11926,-0.66988,0.73283,257.59 |
| 18420 | | |
| 18421 | | > ui mousemode right "translate selected models" |
| 18422 | | |
| 18423 | | > view matrix models |
| 18424 | | > #37,-0.6202,-0.62664,-0.47188,441.71,0.77532,-0.39822,-0.4902,189.51,0.11926,-0.66988,0.73283,261.88 |
| 18425 | | |
| 18426 | | > fitmap #37 inMap #16 |
| 18427 | | |
| 18428 | | Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage2_postprocess.mrc |
| 18429 | | using 93502 points |
| 18430 | | correlation = 0.9191, correlation about mean = 0.165, overlap = 9336 |
| 18431 | | steps = 64, shift = 12.5, angle = 7.56 degrees |
| 18432 | | |
| 18433 | | Position of emd_3720_2017_leaf.map (#37) relative to |
| 18434 | | COPI_golph_linkage2_postprocess.mrc (#16) coordinates: |
| 18435 | | Matrix rotation and translation |
| 18436 | | 0.90668337 0.31937657 -0.27554284 76.88435031 |
| 18437 | | -0.20060685 0.90112046 0.38436805 189.88270228 |
| 18438 | | 0.37105544 -0.29322434 0.88110007 198.61642198 |
| 18439 | | Axis -0.63251755 -0.60358523 -0.48539305 |
| 18440 | | Axis point 0.00000000 255.83888741 -20.46397276 |
| 18441 | | Rotation angle (degrees) 32.38673476 |
| 18442 | | Shift along axis -259.64812684 |
| 18443 | | |
| 18444 | | |
| 18445 | | > fitmap #37 inMap #16 |
| 18446 | | |
| 18447 | | Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage2_postprocess.mrc |
| 18448 | | using 93502 points |
| 18449 | | correlation = 0.9191, correlation about mean = 0.1652, overlap = 9336 |
| 18450 | | steps = 28, shift = 0.0546, angle = 0.0139 degrees |
| 18451 | | |
| 18452 | | Position of emd_3720_2017_leaf.map (#37) relative to |
| 18453 | | COPI_golph_linkage2_postprocess.mrc (#16) coordinates: |
| 18454 | | Matrix rotation and translation |
| 18455 | | 0.90661837 0.31937719 -0.27575590 76.93207441 |
| 18456 | | -0.20050948 0.90111427 0.38443337 189.84318091 |
| 18457 | | 0.37126683 -0.29324268 0.88100491 198.55717456 |
| 18458 | | Axis -0.63244084 -0.60383366 -0.48518399 |
| 18459 | | Axis point 0.00000000 255.75993017 -20.24171337 |
| 18460 | | Rotation angle (degrees) 32.39563074 |
| 18461 | | Shift along axis -259.62544933 |
| 18462 | | |
| 18463 | | |
| 18464 | | > fitmap #37 inMap #16 |
| 18465 | | |
| 18466 | | Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage2_postprocess.mrc |
| 18467 | | using 93502 points |
| 18468 | | correlation = 0.9191, correlation about mean = 0.1652, overlap = 9336 |
| 18469 | | steps = 36, shift = 0.00363, angle = 0.0146 degrees |
| 18470 | | |
| 18471 | | Position of emd_3720_2017_leaf.map (#37) relative to |
| 18472 | | COPI_golph_linkage2_postprocess.mrc (#16) coordinates: |
| 18473 | | Matrix rotation and translation |
| 18474 | | 0.90655889 0.31935421 -0.27597798 76.96690804 |
| 18475 | | -0.20038467 0.90111320 0.38450093 189.82105564 |
| 18476 | | 0.37147940 -0.29327098 0.88090588 198.55093863 |
| 18477 | | Axis -0.63238191 -0.60409753 -0.48493227 |
| 18478 | | Axis point 0.00000000 255.83552652 -19.98037704 |
| 18479 | | Rotation angle (degrees) 32.40416229 |
| 18480 | | Shift along axis -259.62666700 |
| 18481 | | |
| 18482 | | |
| 18483 | | > fitmap #25 inMap #16 |
| 18484 | | |
| 18485 | | Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage2_postprocess.mrc |
| 18486 | | using 65799 points |
| 18487 | | correlation = 0.9339, correlation about mean = 0.1028, overlap = 7611 |
| 18488 | | steps = 28, shift = 0.05, angle = 0.00498 degrees |
| 18489 | | |
| 18490 | | Position of emd_3720_2017_leaf.map (#25) relative to |
| 18491 | | COPI_golph_linkage2_postprocess.mrc (#16) coordinates: |
| 18492 | | Matrix rotation and translation |
| 18493 | | -0.62657486 0.62172151 0.46996420 287.57614633 |
| 18494 | | -0.68564315 -0.72642717 0.04687301 442.22267746 |
| 18495 | | 0.37053671 -0.29285828 0.88144007 198.67795716 |
| 18496 | | Axis -0.25082801 0.07340860 -0.96524426 |
| 18497 | | Axis point 210.78095647 182.27933421 0.00000000 |
| 18498 | | Rotation angle (degrees) 137.37324782 |
| 18499 | | Shift along axis -231.44196227 |
| 18500 | | |
| 18501 | | |
| 18502 | | > select subtract #37 |
| 18503 | | |
| 18504 | | Nothing selected |
| 18505 | | |
| 18506 | | > hide #!16 models |
| 18507 | | |
| 18508 | | > show #!16 models |
| 18509 | | |
| 18510 | | > hide #!16 models |
| 18511 | | |
| 18512 | | > show #!16 models |
| 18513 | | |
| 18514 | | > hide #!2 models |
| 18515 | | |
| 18516 | | > hide #!1 models |
| 18517 | | |
| 18518 | | > show #!1 models |
| 18519 | | |
| 18520 | | > hide #!1 models |
| 18521 | | |
| 18522 | | > hide #!16 models |
| 18523 | | |
| 18524 | | > hide #!37 models |
| 18525 | | |
| 18526 | | > show #!24 models |
| 18527 | | |
| 18528 | | > select add #24 |
| 18529 | | |
| 18530 | | 2 models selected |
| 18531 | | |
| 18532 | | > select add #26 |
| 18533 | | |
| 18534 | | 9810 atoms, 10032 bonds, 1233 residues, 3 models selected |
| 18535 | | |
| 18536 | | > select add #27 |
| 18537 | | |
| 18538 | | 17311 atoms, 17651 bonds, 2186 residues, 4 models selected |
| 18539 | | |
| 18540 | | > select add #28 |
| 18541 | | |
| 18542 | | 18768 atoms, 19134 bonds, 2367 residues, 5 models selected |
| 18543 | | |
| 18544 | | > select add #29 |
| 18545 | | |
| 18546 | | 20225 atoms, 20617 bonds, 2548 residues, 6 models selected |
| 18547 | | |
| 18548 | | > select add #30 |
| 18549 | | |
| 18550 | | 27439 atoms, 27990 bonds, 3453 residues, 7 models selected |
| 18551 | | |
| 18552 | | > select add #31 |
| 18553 | | |
| 18554 | | 28901 atoms, 29471 bonds, 3632 residues, 8 models selected |
| 18555 | | |
| 18556 | | > select add #32 |
| 18557 | | |
| 18558 | | 35574 atoms, 36257 bonds, 1 pseudobond, 4485 residues, 10 models selected |
| 18559 | | |
| 18560 | | > select add #33 |
| 18561 | | |
| 18562 | | 36994 atoms, 37698 bonds, 1 pseudobond, 4662 residues, 11 models selected |
| 18563 | | |
| 18564 | | > select add #34 |
| 18565 | | |
| 18566 | | 39361 atoms, 40096 bonds, 1 pseudobond, 4960 residues, 12 models selected |
| 18567 | | |
| 18568 | | > select add #35 |
| 18569 | | |
| 18570 | | 40824 atoms, 41582 bonds, 1 pseudobond, 5145 residues, 13 models selected |
| 18571 | | |
| 18572 | | > view matrix models |
| 18573 | | > #24,-0.30897,0.50832,-0.80384,318.7,-0.9397,-0.29345,0.17562,584.87,-0.14662,0.80963,0.56833,11.434,#26,-0.24197,-0.17446,-0.95447,210.79,-0.81888,-0.49094,0.29734,398.75,-0.52046,0.85354,-0.024072,333.9,#27,0.77926,0.62163,0.079596,184.52,-0.2235,0.39431,-0.89139,402.07,-0.5855,0.67683,0.4462,288.47,#28,-0.96825,0.1898,-0.16272,238.1,0.17778,0.065136,-0.98191,438.26,-0.17577,-0.97966,-0.096811,256.64,#29,-0.1774,0.97716,0.11701,165.92,0.97638,0.18965,-0.10349,337.75,-0.12332,0.095884,-0.98772,259.8,#30,0.83619,-0.48061,0.2642,158.92,-0.015814,0.46039,0.88758,397.6,-0.54822,-0.74636,0.37737,263.05,#31,-0.84347,0.04321,-0.53544,21.318,0.10453,-0.96451,-0.24249,724.13,-0.52691,-0.2605,0.80901,379.14,#32,0.67253,0.51859,0.52799,185.18,-0.73996,0.48346,0.46767,337.43,-0.012731,-0.70521,0.70888,354.27,#33,-0.97686,0.1891,-0.099891,194.83,0.11777,0.86551,0.48685,335.75,0.17852,0.46382,-0.86776,297.15,#34,-0.79381,0.41854,0.44123,222.27,-0.36693,0.24897,-0.89631,363.97,-0.485,-0.87341,-0.044059,279.95,#35,0.1609,0.64572,0.74643,196.17,0.71148,-0.60004,0.36572,336.26,0.68404,0.47223,-0.55596,297.22 |
| 18574 | | |
| 18575 | | > ui mousemode right "rotate selected models" |
| 18576 | | |
| 18577 | | > view matrix models |
| 18578 | | > #24,-0.4842,0.37787,-0.78915,381,-0.74227,-0.65492,0.14183,619.32,-0.46324,0.65444,0.59759,107.42,#26,-0.36722,-0.33228,-0.86876,214.33,-0.51893,-0.70195,0.48783,362.67,-0.77192,0.62996,0.085343,345.39,#27,0.75655,0.63932,-0.13745,192.63,-0.17442,-0.0052913,-0.98466,386.9,-0.63024,0.76892,0.10751,304.07,#28,-0.89592,0.26876,-0.35369,254.64,0.43318,0.35215,-0.82967,419.2,-0.098427,-0.89653,-0.43192,286.59,#29,0.036352,0.98585,0.16363,163.31,0.97363,-0.071837,0.21651,341.9,0.2252,0.15144,-0.96247,254.89,#30,0.85213,-0.32105,0.41327,168.55,-0.0095694,0.78002,0.62569,397.05,-0.52324,-0.53712,0.66161,278.81,#31,-0.76405,-0.13741,-0.63035,93.041,0.4587,-0.80277,-0.381,686.07,-0.45367,-0.58025,0.67639,501.96,#32,0.50523,0.656,0.56071,175.28,-0.81877,0.56968,0.071263,305.21,-0.27268,-0.4951,0.82494,343.25,#33,-0.94202,0.32926,0.064674,188.44,0.25942,0.59238,0.76275,321.04,0.21283,0.7353,-0.64345,289.07,#34,-0.81549,0.52219,0.24959,222.26,0.0024164,0.4343,-0.90076,346.75,-0.57877,-0.73396,-0.35543,282.65,#35,0.25431,0.47312,0.84349,189.84,0.38259,-0.85024,0.36155,321.2,0.88823,0.23077,-0.39724,289.31 |
| 18579 | | |
| 18580 | | > view matrix models |
| 18581 | | > #24,-0.46887,0.3477,-0.81195,388.56,-0.66386,-0.74509,0.064284,636.62,-0.58263,0.56916,0.58017,155.23,#26,-0.33835,-0.36111,-0.86898,211.08,-0.40032,-0.78048,0.4802,350.66,-0.85162,0.51035,0.11951,347.59,#27,0.78053,0.60765,-0.14676,191.2,-0.091565,-0.1211,-0.98841,380.74,-0.61838,0.78492,-0.038882,309.32,#28,-0.88896,0.30663,-0.34019,254.02,0.45244,0.47268,-0.75623,414.51,-0.071081,-0.82617,-0.55892,299.06,#29,0.032218,0.97853,0.20356,163.65,0.93146,-0.10325,0.3489,343.48,0.36242,0.17836,-0.91479,253.13,#30,0.87255,-0.29503,0.38937,168.2,0.055422,0.85168,0.52113,394.63,-0.48537,-0.43313,0.75948,284.82,#31,-0.7427,-0.11795,-0.65916,85.218,0.5266,-0.71093,-0.46613,649.92,-0.41364,-0.6933,0.59011,543.61,#32,0.51164,0.67842,0.52723,171.85,-0.77731,0.62694,-0.052406,294.52,-0.36609,-0.38301,0.84811,335.79,#33,-0.94852,0.30228,0.094585,187.27,0.23684,0.47863,0.84547,317.72,0.21029,0.82434,-0.52558,284.96,#34,-0.79137,0.5537,0.25913,221.45,0.093224,0.52822,-0.84398,343.71,-0.60418,-0.64374,-0.46964,283.59,#35,0.22012,0.45901,0.86073,188.67,0.25012,-0.87943,0.40502,317.83,0.94286,0.12613,-0.30839,285.28 |
| 18582 | | |
| 18583 | | > ui mousemode right "translate selected models" |
| 18584 | | |
| 18585 | | > view matrix models |
| 18586 | | > #24,-0.46887,0.3477,-0.81195,385.56,-0.66386,-0.74509,0.064284,827.18,-0.58263,0.56916,0.58017,90.938,#26,-0.33835,-0.36111,-0.86898,208.09,-0.40032,-0.78048,0.4802,541.22,-0.85162,0.51035,0.11951,283.31,#27,0.78053,0.60765,-0.14676,188.2,-0.091565,-0.1211,-0.98841,571.3,-0.61838,0.78492,-0.038882,245.03,#28,-0.88896,0.30663,-0.34019,251.03,0.45244,0.47268,-0.75623,605.07,-0.071081,-0.82617,-0.55892,234.77,#29,0.032218,0.97853,0.20356,160.66,0.93146,-0.10325,0.3489,534.04,0.36242,0.17836,-0.91479,188.84,#30,0.87255,-0.29503,0.38937,165.21,0.055422,0.85168,0.52113,585.18,-0.48537,-0.43313,0.75948,220.53,#31,-0.7427,-0.11795,-0.65916,82.221,0.5266,-0.71093,-0.46613,840.47,-0.41364,-0.6933,0.59011,479.33,#32,0.51164,0.67842,0.52723,168.85,-0.77731,0.62694,-0.052406,485.08,-0.36609,-0.38301,0.84811,271.5,#33,-0.94852,0.30228,0.094585,184.27,0.23684,0.47863,0.84547,508.28,0.21029,0.82434,-0.52558,220.68,#34,-0.79137,0.5537,0.25913,218.46,0.093224,0.52822,-0.84398,534.27,-0.60418,-0.64374,-0.46964,219.3,#35,0.22012,0.45901,0.86073,185.67,0.25012,-0.87943,0.40502,508.38,0.94286,0.12613,-0.30839,220.99 |
| 18587 | | |
| 18588 | | > view matrix models |
| 18589 | | > #24,-0.46887,0.3477,-0.81195,366.71,-0.66386,-0.74509,0.064284,819.82,-0.58263,0.56916,0.58017,50.664,#26,-0.33835,-0.36111,-0.86898,189.23,-0.40032,-0.78048,0.4802,533.86,-0.85162,0.51035,0.11951,243.03,#27,0.78053,0.60765,-0.14676,169.35,-0.091565,-0.1211,-0.98841,563.94,-0.61838,0.78492,-0.038882,204.76,#28,-0.88896,0.30663,-0.34019,232.17,0.45244,0.47268,-0.75623,597.71,-0.071081,-0.82617,-0.55892,194.49,#29,0.032218,0.97853,0.20356,141.8,0.93146,-0.10325,0.3489,526.68,0.36242,0.17836,-0.91479,148.57,#30,0.87255,-0.29503,0.38937,146.35,0.055422,0.85168,0.52113,577.83,-0.48537,-0.43313,0.75948,180.26,#31,-0.7427,-0.11795,-0.65916,63.368,0.5266,-0.71093,-0.46613,833.12,-0.41364,-0.6933,0.59011,439.05,#32,0.51164,0.67842,0.52723,150,-0.77731,0.62694,-0.052406,477.72,-0.36609,-0.38301,0.84811,231.23,#33,-0.94852,0.30228,0.094585,165.42,0.23684,0.47863,0.84547,500.92,0.21029,0.82434,-0.52558,180.4,#34,-0.79137,0.5537,0.25913,199.6,0.093224,0.52822,-0.84398,526.91,-0.60418,-0.64374,-0.46964,179.03,#35,0.22012,0.45901,0.86073,166.82,0.25012,-0.87943,0.40502,501.03,0.94286,0.12613,-0.30839,180.72 |
| 18590 | | |
| 18591 | | > ui mousemode right "rotate selected models" |
| 18592 | | |
| 18593 | | > view matrix models |
| 18594 | | > #24,-0.08969,-0.67215,-0.73497,465.99,0.93771,-0.30568,0.16512,347.67,-0.33564,-0.67438,0.65769,224.12,#26,0.30196,-0.93294,-0.19607,101.8,0.91571,0.22665,0.33182,458.07,-0.26513,-0.27974,0.92274,150.27,#27,0.73715,-0.40993,-0.53718,138.14,-0.10941,-0.85689,0.50376,483.94,-0.66681,-0.31257,-0.6765,178.12,#28,-0.074188,0.99192,-0.10289,188.69,0.4751,0.12587,0.87088,434.65,0.8768,0.015726,-0.4806,163.66,#29,0.21673,0.20846,0.95371,150.39,-0.60605,-0.73715,0.29885,552.07,0.76533,-0.64277,-0.033426,155.48,#30,0.7492,0.64523,-0.14958,154.49,-0.31151,0.14396,-0.93927,509.54,-0.58452,0.7503,0.30886,198.09,#31,0.28233,0.11207,-0.95275,56.035,0.56108,0.78628,0.25876,306.28,0.77812,-0.60762,0.15911,494.78,#32,0.085455,0.88634,-0.45508,66.038,0.1793,-0.46297,-0.86805,513.69,-0.98008,-0.0074183,-0.19849,128.87,#33,-0.42186,-0.25575,0.86985,122.65,0.42269,-0.90423,-0.060858,526.03,0.8021,0.342,0.48956,127.43,#34,0.18444,0.98246,0.027308,150.87,0.87966,-0.1774,0.44128,493.66,0.43839,-0.057368,-0.89695,126.23,#35,-0.49597,-0.36073,0.78987,123.03,-0.8346,-0.053083,-0.5483,524.84,0.23972,-0.93116,-0.27474,126.72 |
| 18595 | | |
| 18596 | | > ui mousemode right "translate selected models" |
| 18597 | | |
| 18598 | | > view matrix models |
| 18599 | | > #24,-0.08969,-0.67215,-0.73497,602.78,0.93771,-0.30568,0.16512,196.94,-0.33564,-0.67438,0.65769,286.89,#26,0.30196,-0.93294,-0.19607,238.59,0.91571,0.22665,0.33182,307.33,-0.26513,-0.27974,0.92274,213.04,#27,0.73715,-0.40993,-0.53718,274.93,-0.10941,-0.85689,0.50376,333.2,-0.66681,-0.31257,-0.6765,240.88,#28,-0.074188,0.99192,-0.10289,325.48,0.4751,0.12587,0.87088,283.92,0.8768,0.015726,-0.4806,226.42,#29,0.21673,0.20846,0.95371,287.17,-0.60605,-0.73715,0.29885,401.34,0.76533,-0.64277,-0.033426,218.25,#30,0.7492,0.64523,-0.14958,291.28,-0.31151,0.14396,-0.93927,358.81,-0.58452,0.7503,0.30886,260.86,#31,0.28233,0.11207,-0.95275,192.82,0.56108,0.78628,0.25876,155.55,0.77812,-0.60762,0.15911,557.55,#32,0.085455,0.88634,-0.45508,202.82,0.1793,-0.46297,-0.86805,362.95,-0.98008,-0.0074183,-0.19849,191.64,#33,-0.42186,-0.25575,0.86985,259.44,0.42269,-0.90423,-0.060858,375.29,0.8021,0.342,0.48956,190.2,#34,0.18444,0.98246,0.027308,287.66,0.87966,-0.1774,0.44128,342.92,0.43839,-0.057368,-0.89695,188.99,#35,-0.49597,-0.36073,0.78987,259.82,-0.8346,-0.053083,-0.5483,374.1,0.23972,-0.93116,-0.27474,189.49 |
| 18600 | | |
| 18601 | | > view matrix models |
| 18602 | | > #24,-0.08969,-0.67215,-0.73497,486.55,0.93771,-0.30568,0.16512,162.52,-0.33564,-0.67438,0.65769,309.88,#26,0.30196,-0.93294,-0.19607,122.36,0.91571,0.22665,0.33182,272.91,-0.26513,-0.27974,0.92274,236.03,#27,0.73715,-0.40993,-0.53718,158.7,-0.10941,-0.85689,0.50376,298.78,-0.66681,-0.31257,-0.6765,263.87,#28,-0.074188,0.99192,-0.10289,209.24,0.4751,0.12587,0.87088,249.5,0.8768,0.015726,-0.4806,249.42,#29,0.21673,0.20846,0.95371,170.94,-0.60605,-0.73715,0.29885,366.92,0.76533,-0.64277,-0.033426,241.24,#30,0.7492,0.64523,-0.14958,175.05,-0.31151,0.14396,-0.93927,324.38,-0.58452,0.7503,0.30886,283.85,#31,0.28233,0.11207,-0.95275,76.588,0.56108,0.78628,0.25876,121.13,0.77812,-0.60762,0.15911,580.54,#32,0.085455,0.88634,-0.45508,86.592,0.1793,-0.46297,-0.86805,328.53,-0.98008,-0.0074183,-0.19849,214.63,#33,-0.42186,-0.25575,0.86985,143.2,0.42269,-0.90423,-0.060858,340.87,0.8021,0.342,0.48956,213.19,#34,0.18444,0.98246,0.027308,171.42,0.87966,-0.1774,0.44128,308.5,0.43839,-0.057368,-0.89695,211.98,#35,-0.49597,-0.36073,0.78987,143.58,-0.8346,-0.053083,-0.5483,339.68,0.23972,-0.93116,-0.27474,212.48 |
| 18603 | | |
| 18604 | | > view matrix models |
| 18605 | | > #24,-0.08969,-0.67215,-0.73497,487.15,0.93771,-0.30568,0.16512,161.83,-0.33564,-0.67438,0.65769,325.95,#26,0.30196,-0.93294,-0.19607,122.96,0.91571,0.22665,0.33182,272.22,-0.26513,-0.27974,0.92274,252.1,#27,0.73715,-0.40993,-0.53718,159.3,-0.10941,-0.85689,0.50376,298.09,-0.66681,-0.31257,-0.6765,279.95,#28,-0.074188,0.99192,-0.10289,209.85,0.4751,0.12587,0.87088,248.8,0.8768,0.015726,-0.4806,265.49,#29,0.21673,0.20846,0.95371,171.55,-0.60605,-0.73715,0.29885,366.22,0.76533,-0.64277,-0.033426,257.32,#30,0.7492,0.64523,-0.14958,175.65,-0.31151,0.14396,-0.93927,323.69,-0.58452,0.7503,0.30886,299.92,#31,0.28233,0.11207,-0.95275,77.194,0.56108,0.78628,0.25876,120.44,0.77812,-0.60762,0.15911,596.61,#32,0.085455,0.88634,-0.45508,87.198,0.1793,-0.46297,-0.86805,327.84,-0.98008,-0.0074183,-0.19849,230.7,#33,-0.42186,-0.25575,0.86985,143.81,0.42269,-0.90423,-0.060858,340.18,0.8021,0.342,0.48956,229.26,#34,0.18444,0.98246,0.027308,172.03,0.87966,-0.1774,0.44128,307.81,0.43839,-0.057368,-0.89695,228.06,#35,-0.49597,-0.36073,0.78987,144.19,-0.8346,-0.053083,-0.5483,338.99,0.23972,-0.93116,-0.27474,228.55 |
| 18606 | | |
| 18607 | | > view matrix models |
| 18608 | | > #24,-0.08969,-0.67215,-0.73497,503.57,0.93771,-0.30568,0.16512,159.1,-0.33564,-0.67438,0.65769,333.22,#26,0.30196,-0.93294,-0.19607,139.38,0.91571,0.22665,0.33182,269.5,-0.26513,-0.27974,0.92274,259.37,#27,0.73715,-0.40993,-0.53718,175.72,-0.10941,-0.85689,0.50376,295.37,-0.66681,-0.31257,-0.6765,287.22,#28,-0.074188,0.99192,-0.10289,226.26,0.4751,0.12587,0.87088,246.08,0.8768,0.015726,-0.4806,272.76,#29,0.21673,0.20846,0.95371,187.96,-0.60605,-0.73715,0.29885,363.5,0.76533,-0.64277,-0.033426,264.59,#30,0.7492,0.64523,-0.14958,192.07,-0.31151,0.14396,-0.93927,320.97,-0.58452,0.7503,0.30886,307.19,#31,0.28233,0.11207,-0.95275,93.609,0.56108,0.78628,0.25876,117.71,0.77812,-0.60762,0.15911,603.88,#32,0.085455,0.88634,-0.45508,103.61,0.1793,-0.46297,-0.86805,325.11,-0.98008,-0.0074183,-0.19849,237.97,#33,-0.42186,-0.25575,0.86985,160.22,0.42269,-0.90423,-0.060858,337.46,0.8021,0.342,0.48956,236.53,#34,0.18444,0.98246,0.027308,188.44,0.87966,-0.1774,0.44128,305.09,0.43839,-0.057368,-0.89695,235.33,#35,-0.49597,-0.36073,0.78987,160.61,-0.8346,-0.053083,-0.5483,336.27,0.23972,-0.93116,-0.27474,235.82 |
| 18609 | | |
| 18610 | | > ui mousemode right "rotate selected models" |
| 18611 | | |
| 18612 | | > view matrix models |
| 18613 | | > #24,-0.074452,-0.67754,-0.73171,500.46,0.92674,-0.31796,0.20013,156.27,-0.36825,-0.6632,0.65158,339.74,#26,0.31683,-0.92927,-0.18996,138.09,0.90077,0.23207,0.36709,270,-0.29704,-0.28742,0.91058,262.11,#27,0.7348,-0.42421,-0.52926,174.87,-0.14482,-0.86042,0.48857,296.23,-0.66265,-0.28235,-0.69367,289.03,#28,-0.065762,0.99387,-0.088849,224.59,0.50665,0.10997,0.85511,245.64,0.85964,0.011219,-0.51077,276.3,#29,0.20723,0.19586,0.95849,188.22,-0.58239,-0.76252,0.28173,363.32,0.78605,-0.6166,-0.043953,264.03,#30,0.74357,0.64802,-0.16483,191.65,-0.34409,0.15947,-0.9253,322.24,-0.57333,0.74474,0.34156,308.09,#31,0.29206,0.1246,-0.94825,90.06,0.58323,0.76258,0.27984,131.14,0.75798,-0.63478,0.15005,611.73,#32,0.087741,0.87859,-0.46945,103.24,0.14346,-0.4775,-0.86684,325.42,-0.98576,0.0087077,-0.16794,238.78,#33,-0.4143,-0.27038,0.86905,160.04,0.4574,-0.88737,-0.058026,336.77,0.78686,0.37346,0.49131,236.91,#34,0.1992,0.97937,0.033975,187.72,0.8913,-0.19548,0.40912,303.91,0.40732,-0.051215,-0.91185,236.83,#35,-0.50949,-0.36218,0.78054,160.4,-0.81741,-0.079678,-0.57053,335.55,0.26883,-0.9287,-0.25546,236.23 |
| 18614 | | |
| 18615 | | > ui mousemode right "translate selected models" |
| 18616 | | |
| 18617 | | > view matrix models |
| 18618 | | > #24,-0.074452,-0.67754,-0.73171,496.69,0.92674,-0.31796,0.20013,159.15,-0.36825,-0.6632,0.65158,339.83,#26,0.31683,-0.92927,-0.18996,134.32,0.90077,0.23207,0.36709,272.88,-0.29704,-0.28742,0.91058,262.2,#27,0.7348,-0.42421,-0.52926,171.1,-0.14482,-0.86042,0.48857,299.11,-0.66265,-0.28235,-0.69367,289.12,#28,-0.065762,0.99387,-0.088849,220.82,0.50665,0.10997,0.85511,248.52,0.85964,0.011219,-0.51077,276.39,#29,0.20723,0.19586,0.95849,184.45,-0.58239,-0.76252,0.28173,366.2,0.78605,-0.6166,-0.043953,264.12,#30,0.74357,0.64802,-0.16483,187.88,-0.34409,0.15947,-0.9253,325.12,-0.57333,0.74474,0.34156,308.18,#31,0.29206,0.1246,-0.94825,86.286,0.58323,0.76258,0.27984,134.02,0.75798,-0.63478,0.15005,611.82,#32,0.087741,0.87859,-0.46945,99.461,0.14346,-0.4775,-0.86684,328.3,-0.98576,0.0087077,-0.16794,238.87,#33,-0.4143,-0.27038,0.86905,156.27,0.4574,-0.88737,-0.058026,339.65,0.78686,0.37346,0.49131,237,#34,0.1992,0.97937,0.033975,183.95,0.8913,-0.19548,0.40912,306.79,0.40732,-0.051215,-0.91185,236.92,#35,-0.50949,-0.36218,0.78054,156.63,-0.81741,-0.079678,-0.57053,338.43,0.26883,-0.9287,-0.25546,236.32 |
| 18619 | | |
| 18620 | | > ui mousemode right "rotate selected models" |
| 18621 | | |
| 18622 | | > view matrix models |
| 18623 | | > #24,0.015488,-0.70572,-0.70832,476.73,0.75907,-0.45281,0.46774,164.57,-0.65083,-0.54491,0.52867,407.6,#26,0.40246,-0.90261,-0.15273,127.04,0.72182,0.21028,0.65936,279.65,-0.56302,-0.37561,0.73615,286.17,#27,0.71676,-0.50588,-0.47994,166.21,-0.41958,-0.8626,0.28262,309.71,-0.55697,-0.0011933,-0.83053,304.25,#28,-0.015624,0.99986,-0.0059027,210.77,0.76268,0.015735,0.64658,253.39,0.64659,0.0056,-0.76282,310.14,#29,0.1504,0.12048,0.98126,185.98,-0.31122,-0.93631,0.16267,363.48,0.93836,-0.32985,-0.10332,259.28,#30,0.70623,0.66103,-0.25352,185.45,-0.57883,0.33292,-0.74439,338.85,-0.40766,0.67246,0.61775,314.36,#31,0.34786,0.19747,-0.91651,66.042,0.76875,0.49951,0.3994,267.21,0.53667,-0.8435,0.021953,660.26,#32,0.10045,0.82814,-0.55145,97.698,-0.19398,-0.52731,-0.82723,327.41,-0.97585,0.19006,0.10767,245.08,#33,-0.36735,-0.35487,0.85972,155.34,0.7247,-0.6886,0.025417,332.26,0.58298,0.63237,0.51013,241.37,#34,0.28503,0.95575,0.072764,179.7,0.95303,-0.2907,0.08502,298.77,0.10241,0.045112,-0.99372,252.8,#35,-0.58615,-0.36895,0.72132,155.58,-0.63484,-0.34401,-0.69184,330.86,0.50339,-0.86344,-0.032581,241.15 |
| 18624 | | |
| 18625 | | > ui mousemode right "translate selected models" |
| 18626 | | |
| 18627 | | > view matrix models |
| 18628 | | > #24,0.015488,-0.70572,-0.70832,485.32,0.75907,-0.45281,0.46774,145.51,-0.65083,-0.54491,0.52867,389.02,#26,0.40246,-0.90261,-0.15273,135.62,0.72182,0.21028,0.65936,260.59,-0.56302,-0.37561,0.73615,267.59,#27,0.71676,-0.50588,-0.47994,174.8,-0.41958,-0.8626,0.28262,290.65,-0.55697,-0.0011933,-0.83053,285.67,#28,-0.015624,0.99986,-0.0059027,219.36,0.76268,0.015735,0.64658,234.33,0.64659,0.0056,-0.76282,291.56,#29,0.1504,0.12048,0.98126,194.57,-0.31122,-0.93631,0.16267,344.42,0.93836,-0.32985,-0.10332,240.7,#30,0.70623,0.66103,-0.25352,194.04,-0.57883,0.33292,-0.74439,319.79,-0.40766,0.67246,0.61775,295.78,#31,0.34786,0.19747,-0.91651,74.629,0.76875,0.49951,0.3994,248.15,0.53667,-0.8435,0.021953,641.68,#32,0.10045,0.82814,-0.55145,106.29,-0.19398,-0.52731,-0.82723,308.35,-0.97585,0.19006,0.10767,226.49,#33,-0.36735,-0.35487,0.85972,163.92,0.7247,-0.6886,0.025417,313.19,0.58298,0.63237,0.51013,222.79,#34,0.28503,0.95575,0.072764,188.29,0.95303,-0.2907,0.08502,279.71,0.10241,0.045112,-0.99372,234.22,#35,-0.58615,-0.36895,0.72132,164.16,-0.63484,-0.34401,-0.69184,311.8,0.50339,-0.86344,-0.032581,222.56 |
| 18629 | | |
| 18630 | | > view matrix models |
| 18631 | | > #24,0.015488,-0.70572,-0.70832,486.53,0.75907,-0.45281,0.46774,148.75,-0.65083,-0.54491,0.52867,389.15,#26,0.40246,-0.90261,-0.15273,136.84,0.72182,0.21028,0.65936,263.83,-0.56302,-0.37561,0.73615,267.72,#27,0.71676,-0.50588,-0.47994,176.01,-0.41958,-0.8626,0.28262,293.89,-0.55697,-0.0011933,-0.83053,285.8,#28,-0.015624,0.99986,-0.0059027,220.58,0.76268,0.015735,0.64658,237.57,0.64659,0.0056,-0.76282,291.69,#29,0.1504,0.12048,0.98126,195.78,-0.31122,-0.93631,0.16267,347.66,0.93836,-0.32985,-0.10332,240.83,#30,0.70623,0.66103,-0.25352,195.25,-0.57883,0.33292,-0.74439,323.03,-0.40766,0.67246,0.61775,295.91,#31,0.34786,0.19747,-0.91651,75.844,0.76875,0.49951,0.3994,251.4,0.53667,-0.8435,0.021953,641.81,#32,0.10045,0.82814,-0.55145,107.5,-0.19398,-0.52731,-0.82723,311.59,-0.97585,0.19006,0.10767,226.63,#33,-0.36735,-0.35487,0.85972,165.14,0.7247,-0.6886,0.025417,316.44,0.58298,0.63237,0.51013,222.93,#34,0.28503,0.95575,0.072764,189.5,0.95303,-0.2907,0.08502,282.95,0.10241,0.045112,-0.99372,234.35,#35,-0.58615,-0.36895,0.72132,165.38,-0.63484,-0.34401,-0.69184,315.04,0.50339,-0.86344,-0.032581,222.7 |
| 18632 | | |
| 18633 | | > view matrix models |
| 18634 | | > #24,0.015488,-0.70572,-0.70832,487.92,0.75907,-0.45281,0.46774,150.64,-0.65083,-0.54491,0.52867,386.46,#26,0.40246,-0.90261,-0.15273,138.23,0.72182,0.21028,0.65936,265.72,-0.56302,-0.37561,0.73615,265.03,#27,0.71676,-0.50588,-0.47994,177.4,-0.41958,-0.8626,0.28262,295.78,-0.55697,-0.0011933,-0.83053,283.11,#28,-0.015624,0.99986,-0.0059027,221.96,0.76268,0.015735,0.64658,239.46,0.64659,0.0056,-0.76282,289.01,#29,0.1504,0.12048,0.98126,197.17,-0.31122,-0.93631,0.16267,349.55,0.93836,-0.32985,-0.10332,238.14,#30,0.70623,0.66103,-0.25352,196.64,-0.57883,0.33292,-0.74439,324.92,-0.40766,0.67246,0.61775,293.22,#31,0.34786,0.19747,-0.91651,77.232,0.76875,0.49951,0.3994,253.28,0.53667,-0.8435,0.021953,639.12,#32,0.10045,0.82814,-0.55145,108.89,-0.19398,-0.52731,-0.82723,313.48,-0.97585,0.19006,0.10767,223.94,#33,-0.36735,-0.35487,0.85972,166.53,0.7247,-0.6886,0.025417,318.32,0.58298,0.63237,0.51013,220.24,#34,0.28503,0.95575,0.072764,190.89,0.95303,-0.2907,0.08502,284.84,0.10241,0.045112,-0.99372,231.66,#35,-0.58615,-0.36895,0.72132,166.77,-0.63484,-0.34401,-0.69184,316.93,0.50339,-0.86344,-0.032581,220.01 |
| 18635 | | |
| 18636 | | > ui mousemode right "rotate selected models" |
| 18637 | | |
| 18638 | | > view matrix models |
| 18639 | | > #24,-0.35722,-0.60979,-0.7075,553.12,0.5609,-0.74574,0.35954,277.56,-0.74685,-0.2684,0.60842,335.71,#26,0.029983,-0.97595,-0.21593,168.65,0.65499,-0.144,0.74179,258.66,-0.75504,-0.16368,0.63492,289.88,#27,0.69421,-0.18747,-0.69493,198.57,-0.31886,-0.94568,-0.063411,301.83,-0.64529,0.2656,-0.71628,292.38,#28,-0.13975,0.92175,-0.36172,259.32,0.85575,0.29621,0.4242,263.21,0.49815,-0.25027,-0.83019,295.78,#29,0.41968,0.35385,0.83586,190.78,-0.030652,-0.91483,0.40267,347.05,0.90715,-0.19462,-0.37309,235.83,#30,0.76485,0.63182,0.12572,208.82,-0.43562,0.65104,-0.6216,336.71,-0.47459,0.42067,0.77318,292.47,#31,0.17388,-0.14086,-0.97464,187.58,0.93786,0.32552,0.12027,316.53,0.30032,-0.93498,0.18871,664.19,#32,-0.029887,0.97495,-0.22043,118.08,-0.37835,-0.21515,-0.90031,285.42,-0.92518,0.056491,0.3753,250.42,#33,-0.46517,0.016482,0.88507,169.16,0.70706,-0.59465,0.38269,305.23,0.53261,0.80381,0.26496,231.52,#34,-0.027194,0.98833,-0.14988,204.82,0.99144,0.0075153,-0.13033,283.51,-0.12769,-0.15214,-0.98008,241.64,#35,-0.2398,-0.39418,0.8872,169.8,-0.63924,-0.62369,-0.44988,303.95,0.73066,-0.67501,-0.10242,231.47 |
| 18640 | | |
| 18641 | | > ui mousemode right "translate selected models" |
| 18642 | | |
| 18643 | | > view matrix models |
| 18644 | | > #24,-0.35722,-0.60979,-0.7075,552.21,0.5609,-0.74574,0.35954,297.3,-0.74685,-0.2684,0.60842,331.38,#26,0.029983,-0.97595,-0.21593,167.74,0.65499,-0.144,0.74179,278.39,-0.75504,-0.16368,0.63492,285.55,#27,0.69421,-0.18747,-0.69493,197.66,-0.31886,-0.94568,-0.063411,321.56,-0.64529,0.2656,-0.71628,288.05,#28,-0.13975,0.92175,-0.36172,258.41,0.85575,0.29621,0.4242,282.95,0.49815,-0.25027,-0.83019,291.45,#29,0.41968,0.35385,0.83586,189.87,-0.030652,-0.91483,0.40267,366.79,0.90715,-0.19462,-0.37309,231.5,#30,0.76485,0.63182,0.12572,207.91,-0.43562,0.65104,-0.6216,356.44,-0.47459,0.42067,0.77318,288.14,#31,0.17388,-0.14086,-0.97464,186.67,0.93786,0.32552,0.12027,336.27,0.30032,-0.93498,0.18871,659.86,#32,-0.029887,0.97495,-0.22043,117.17,-0.37835,-0.21515,-0.90031,305.16,-0.92518,0.056491,0.3753,246.09,#33,-0.46517,0.016482,0.88507,168.25,0.70706,-0.59465,0.38269,324.97,0.53261,0.80381,0.26496,227.19,#34,-0.027194,0.98833,-0.14988,203.91,0.99144,0.0075153,-0.13033,303.25,-0.12769,-0.15214,-0.98008,237.31,#35,-0.2398,-0.39418,0.8872,168.89,-0.63924,-0.62369,-0.44988,323.68,0.73066,-0.67501,-0.10242,227.14 |
| 18645 | | |
| 18646 | | > view matrix models |
| 18647 | | > #24,-0.35722,-0.60979,-0.7075,543.3,0.5609,-0.74574,0.35954,277.35,-0.74685,-0.2684,0.60842,339.23,#26,0.029983,-0.97595,-0.21593,158.83,0.65499,-0.144,0.74179,258.44,-0.75504,-0.16368,0.63492,293.39,#27,0.69421,-0.18747,-0.69493,188.75,-0.31886,-0.94568,-0.063411,301.61,-0.64529,0.2656,-0.71628,295.89,#28,-0.13975,0.92175,-0.36172,249.5,0.85575,0.29621,0.4242,263,0.49815,-0.25027,-0.83019,299.29,#29,0.41968,0.35385,0.83586,180.96,-0.030652,-0.91483,0.40267,346.84,0.90715,-0.19462,-0.37309,239.34,#30,0.76485,0.63182,0.12572,199,-0.43562,0.65104,-0.6216,336.49,-0.47459,0.42067,0.77318,295.98,#31,0.17388,-0.14086,-0.97464,177.76,0.93786,0.32552,0.12027,316.32,0.30032,-0.93498,0.18871,667.7,#32,-0.029887,0.97495,-0.22043,108.26,-0.37835,-0.21515,-0.90031,285.2,-0.92518,0.056491,0.3753,253.94,#33,-0.46517,0.016482,0.88507,159.35,0.70706,-0.59465,0.38269,305.02,0.53261,0.80381,0.26496,235.04,#34,-0.027194,0.98833,-0.14988,195,0.99144,0.0075153,-0.13033,283.29,-0.12769,-0.15214,-0.98008,245.16,#35,-0.2398,-0.39418,0.8872,159.98,-0.63924,-0.62369,-0.44988,303.73,0.73066,-0.67501,-0.10242,234.98 |
| 18648 | | |
| 18649 | | > view matrix models |
| 18650 | | > #24,-0.35722,-0.60979,-0.7075,532.66,0.5609,-0.74574,0.35954,267.9,-0.74685,-0.2684,0.60842,340.62,#26,0.029983,-0.97595,-0.21593,148.19,0.65499,-0.144,0.74179,249,-0.75504,-0.16368,0.63492,294.79,#27,0.69421,-0.18747,-0.69493,178.11,-0.31886,-0.94568,-0.063411,292.17,-0.64529,0.2656,-0.71628,297.29,#28,-0.13975,0.92175,-0.36172,238.86,0.85575,0.29621,0.4242,253.55,0.49815,-0.25027,-0.83019,300.69,#29,0.41968,0.35385,0.83586,170.32,-0.030652,-0.91483,0.40267,337.39,0.90715,-0.19462,-0.37309,240.74,#30,0.76485,0.63182,0.12572,188.36,-0.43562,0.65104,-0.6216,327.05,-0.47459,0.42067,0.77318,297.38,#31,0.17388,-0.14086,-0.97464,167.12,0.93786,0.32552,0.12027,306.87,0.30032,-0.93498,0.18871,669.1,#32,-0.029887,0.97495,-0.22043,97.622,-0.37835,-0.21515,-0.90031,275.76,-0.92518,0.056491,0.3753,255.33,#33,-0.46517,0.016482,0.88507,148.71,0.70706,-0.59465,0.38269,295.57,0.53261,0.80381,0.26496,236.43,#34,-0.027194,0.98833,-0.14988,184.36,0.99144,0.0075153,-0.13033,273.85,-0.12769,-0.15214,-0.98008,246.55,#35,-0.2398,-0.39418,0.8872,149.34,-0.63924,-0.62369,-0.44988,294.28,0.73066,-0.67501,-0.10242,236.38 |
| 18651 | | |
| 18652 | | > ui mousemode right "rotate selected models" |
| 18653 | | |
| 18654 | | > view matrix models |
| 18655 | | > #24,-0.21904,-0.50768,-0.83323,508.98,0.63559,-0.72217,0.27293,265.5,-0.7403,-0.46981,0.48086,407.33,#26,0.15696,-0.91362,-0.37506,143.55,0.73781,-0.14397,0.65948,244.21,-0.6565,-0.38024,0.65148,279.74,#27,0.8261,-0.19677,-0.52805,170.38,-0.22856,-0.97352,0.0051966,287.4,-0.51509,0.1164,-0.8492,293.14,#28,-0.27727,0.93971,-0.20019,230.74,0.7899,0.34156,0.5093,249.89,0.54697,-0.016913,-0.83698,305.07,#29,0.22364,0.42625,0.87653,172.49,-0.1261,-0.87909,0.45967,338.66,0.96648,-0.21333,-0.14285,241.44,#30,0.86491,0.50183,-0.010004,178.84,-0.36269,0.61108,-0.70358,322.24,-0.34697,0.61217,0.71054,299.16,#31,0.066618,0.041704,-0.99691,81.986,0.9005,0.42779,0.078071,259.1,0.42972,-0.90292,-0.0090558,653.65,#32,0.17899,0.95058,-0.25369,101.12,-0.27016,-0.20045,-0.94172,274.3,-0.94603,0.2371,0.22094,233.64,#33,-0.59594,-0.1243,0.79335,154.09,0.63169,-0.68255,0.36756,297.18,0.49581,0.7202,0.48527,228.19,#34,-0.043601,0.99711,0.062218,187.8,0.99879,0.04492,-0.019959,275.16,-0.022696,0.061272,-0.99786,243.18,#35,-0.35766,-0.2181,0.90803,154.78,-0.72361,-0.54991,-0.41711,295.92,0.59031,-0.80624,0.038861,228.13 |
| 18656 | | |
| 18657 | | > view matrix models |
| 18658 | | > #24,-0.041943,-0.22419,-0.97364,443.77,0.57541,-0.80209,0.1599,320.02,-0.81679,-0.55353,0.16264,511.75,#26,0.2682,-0.70861,-0.65264,147.47,0.73441,-0.28804,0.61455,241.37,-0.62347,-0.64413,0.44316,274.49,#27,0.97255,-0.09542,-0.21225,162.46,-0.11804,-0.98831,-0.096544,288.41,-0.20055,0.11895,-0.97243,292.59,#28,-0.54362,0.83898,0.024231,219.79,0.75506,0.47622,0.45066,260.58,0.36656,0.26328,-0.89237,326.23,#29,-0.095298,0.58373,0.80633,174.9,-0.064762,-0.81194,0.58014,337.96,0.99334,0.0030664,0.11518,240.68,#30,0.97052,0.18598,-0.1533,163.82,-0.24024,0.69535,-0.67733,324.27,-0.019374,0.6942,0.71953,298.39,#31,-0.19786,0.28274,-0.93857,-36.055,0.91202,0.40403,-0.070551,257.36,0.35927,-0.86995,-0.3378,605.97,#32,0.51639,0.83559,-0.18743,119.2,-0.26686,-0.050959,-0.96239,263.56,-0.81371,0.54698,0.19667,215,#33,-0.80372,-0.26603,0.53222,167.52,0.55008,-0.67318,0.49421,293.86,0.22681,0.68997,0.68738,225.32,#34,-0.16354,0.90538,0.39184,196.9,0.98033,0.19362,-0.038214,277.5,-0.11047,0.37788,-0.91924,252.05,#35,-0.4356,0.13552,0.88988,168.34,-0.7519,-0.59828,-0.27694,292.72,0.49487,-0.78974,0.36251,225.58 |
| 18659 | | |
| 18660 | | > view matrix models |
| 18661 | | > #24,-0.27058,-0.62226,-0.73456,521.51,0.65435,-0.67854,0.33377,239.13,-0.70612,-0.39035,0.59078,359.49,#26,0.12017,-0.96605,-0.22871,141.31,0.7269,-0.071283,0.68303,246.67,-0.67614,-0.24833,0.69366,284.21,#27,0.72616,-0.25291,-0.63932,172.99,-0.28881,-0.95607,0.050177,287.6,-0.62392,0.14821,-0.7673,293.49,#28,-0.13671,0.95163,-0.27516,231.36,0.80608,0.26832,0.52749,245.5,0.5758,-0.14969,-0.80377,297.11,#29,0.34584,0.32344,0.88078,171.81,-0.14789,-0.90818,0.39158,338.81,0.92656,-0.26569,-0.26625,241.72,#30,0.7776,0.62779,0.035077,184.87,-0.42639,0.5675,-0.70437,321.66,-0.4621,0.53276,0.70897,298.07,#31,0.19495,-0.051819,-0.97944,133.82,0.89049,0.42794,0.1546,264.34,0.41113,-0.90232,0.12957,662.96,#32,0.024019,0.95609,-0.29208,95.312,-0.27828,-0.27422,-0.92052,280.17,-0.9602,0.10339,0.25947,244.31,#33,-0.47061,-0.074793,0.87916,148.61,0.67312,-0.67464,0.30293,298.94,0.57047,0.73434,0.36784,231.39,#34,0.030616,0.99638,-0.079245,182.28,0.99929,-0.032262,-0.019566,274.32,-0.022051,-0.07859,-0.99666,241.67,#35,-0.32645,-0.37003,0.86977,149.18,-0.69697,-0.52735,-0.48594,297.63,0.63849,-0.76484,-0.085747,231.24 |
| 18662 | | |
| 18663 | | > view matrix models |
| 18664 | | > #24,-0.24658,-0.47056,-0.84721,510.95,0.81148,-0.57817,0.084954,238.76,-0.52981,-0.66655,0.52442,389.02,#26,0.12375,-0.90419,-0.40882,147.45,0.90202,-0.069212,0.42612,238.73,-0.41358,-0.42149,0.80703,254.34,#27,0.83808,-0.15013,-0.52448,172.12,-0.032969,-0.97357,0.226,277.39,-0.54455,-0.17211,-0.82088,280.06,#28,-0.31702,0.92224,-0.2213,234.18,0.58539,0.37386,0.7194,240.79,0.7462,0.098518,-0.6584,281.75,#29,0.2258,0.46886,0.85392,171.96,-0.38914,-0.76018,0.52029,341.41,0.89307,-0.44978,0.010809,245.34,#30,0.88266,0.46953,0.021185,178.88,-0.20798,0.43062,-0.87824,309.36,-0.42148,0.77079,0.47774,296,#31,0.021581,0.024476,-0.99947,83.835,0.74045,0.67133,0.032428,142.43,0.67176,-0.74076,-0.0036349,615.58,#32,0.19535,0.95823,-0.2089,103.8,0.022341,-0.2173,-0.97585,278.89,-0.98048,0.18597,-0.063859,218.11,#33,-0.62752,-0.094022,0.77291,155.63,0.43447,-0.86605,0.24739,304.73,0.64611,0.49104,0.58431,220.39,#34,-0.091532,0.99355,0.066872,190.3,0.95992,0.07017,0.27135,280.87,0.26491,0.089029,-0.96016,229.01,#35,-0.32465,-0.18834,0.92689,156.38,-0.87839,-0.3034,-0.36931,303.58,0.35077,-0.93407,-0.066937,219.99 |
| 18665 | | |
| 18666 | | > ui mousemode right "translate selected models" |
| 18667 | | |
| 18668 | | > view matrix models |
| 18669 | | > #24,-0.24658,-0.47056,-0.84721,517.77,0.81148,-0.57817,0.084954,256.64,-0.52981,-0.66655,0.52442,390.48,#26,0.12375,-0.90419,-0.40882,154.27,0.90202,-0.069212,0.42612,256.61,-0.41358,-0.42149,0.80703,255.79,#27,0.83808,-0.15013,-0.52448,178.95,-0.032969,-0.97357,0.226,295.27,-0.54455,-0.17211,-0.82088,281.52,#28,-0.31702,0.92224,-0.2213,241,0.58539,0.37386,0.7194,258.66,0.7462,0.098518,-0.6584,283.2,#29,0.2258,0.46886,0.85392,178.78,-0.38914,-0.76018,0.52029,359.29,0.89307,-0.44978,0.010809,246.8,#30,0.88266,0.46953,0.021185,185.7,-0.20798,0.43062,-0.87824,327.24,-0.42148,0.77079,0.47774,297.45,#31,0.021581,0.024476,-0.99947,90.656,0.74045,0.67133,0.032428,160.3,0.67176,-0.74076,-0.0036349,617.03,#32,0.19535,0.95823,-0.2089,110.62,0.022341,-0.2173,-0.97585,296.76,-0.98048,0.18597,-0.063859,219.56,#33,-0.62752,-0.094022,0.77291,162.45,0.43447,-0.86605,0.24739,322.61,0.64611,0.49104,0.58431,221.85,#34,-0.091532,0.99355,0.066872,197.12,0.95992,0.07017,0.27135,298.74,0.26491,0.089029,-0.96016,230.46,#35,-0.32465,-0.18834,0.92689,163.2,-0.87839,-0.3034,-0.36931,321.45,0.35077,-0.93407,-0.066937,221.44 |
| 18670 | | |
| 18671 | | > view matrix models |
| 18672 | | > #24,-0.24658,-0.47056,-0.84721,512.22,0.81148,-0.57817,0.084954,255.44,-0.52981,-0.66655,0.52442,387.71,#26,0.12375,-0.90419,-0.40882,148.72,0.90202,-0.069212,0.42612,255.41,-0.41358,-0.42149,0.80703,253.02,#27,0.83808,-0.15013,-0.52448,173.39,-0.032969,-0.97357,0.226,294.07,-0.54455,-0.17211,-0.82088,278.75,#28,-0.31702,0.92224,-0.2213,235.44,0.58539,0.37386,0.7194,257.47,0.7462,0.098518,-0.6584,280.43,#29,0.2258,0.46886,0.85392,173.23,-0.38914,-0.76018,0.52029,358.09,0.89307,-0.44978,0.010809,244.03,#30,0.88266,0.46953,0.021185,180.14,-0.20798,0.43062,-0.87824,326.04,-0.42148,0.77079,0.47774,294.68,#31,0.021581,0.024476,-0.99947,85.101,0.74045,0.67133,0.032428,159.1,0.67176,-0.74076,-0.0036349,614.26,#32,0.19535,0.95823,-0.2089,105.07,0.022341,-0.2173,-0.97585,295.57,-0.98048,0.18597,-0.063859,216.79,#33,-0.62752,-0.094022,0.77291,156.9,0.43447,-0.86605,0.24739,321.41,0.64611,0.49104,0.58431,219.08,#34,-0.091532,0.99355,0.066872,191.56,0.95992,0.07017,0.27135,297.54,0.26491,0.089029,-0.96016,227.69,#35,-0.32465,-0.18834,0.92689,157.64,-0.87839,-0.3034,-0.36931,320.25,0.35077,-0.93407,-0.066937,218.67 |
| 18673 | | |
| 18674 | | > view matrix models |
| 18675 | | > #24,-0.24658,-0.47056,-0.84721,518.26,0.81148,-0.57817,0.084954,261.35,-0.52981,-0.66655,0.52442,391.38,#26,0.12375,-0.90419,-0.40882,154.76,0.90202,-0.069212,0.42612,261.32,-0.41358,-0.42149,0.80703,256.69,#27,0.83808,-0.15013,-0.52448,179.43,-0.032969,-0.97357,0.226,299.98,-0.54455,-0.17211,-0.82088,282.42,#28,-0.31702,0.92224,-0.2213,241.48,0.58539,0.37386,0.7194,263.38,0.7462,0.098518,-0.6584,284.1,#29,0.2258,0.46886,0.85392,179.27,-0.38914,-0.76018,0.52029,364,0.89307,-0.44978,0.010809,247.7,#30,0.88266,0.46953,0.021185,186.19,-0.20798,0.43062,-0.87824,331.95,-0.42148,0.77079,0.47774,298.35,#31,0.021581,0.024476,-0.99947,91.143,0.74045,0.67133,0.032428,165.02,0.67176,-0.74076,-0.0036349,617.93,#32,0.19535,0.95823,-0.2089,111.11,0.022341,-0.2173,-0.97585,301.48,-0.98048,0.18597,-0.063859,220.46,#33,-0.62752,-0.094022,0.77291,162.94,0.43447,-0.86605,0.24739,327.32,0.64611,0.49104,0.58431,222.75,#34,-0.091532,0.99355,0.066872,197.61,0.95992,0.07017,0.27135,303.46,0.26491,0.089029,-0.96016,231.36,#35,-0.32465,-0.18834,0.92689,163.69,-0.87839,-0.3034,-0.36931,326.17,0.35077,-0.93407,-0.066937,222.34 |
| 18676 | | |
| 18677 | | > view matrix models |
| 18678 | | > #24,-0.24658,-0.47056,-0.84721,520.55,0.81148,-0.57817,0.084954,256.18,-0.52981,-0.66655,0.52442,395.97,#26,0.12375,-0.90419,-0.40882,157.06,0.90202,-0.069212,0.42612,256.15,-0.41358,-0.42149,0.80703,261.28,#27,0.83808,-0.15013,-0.52448,181.73,-0.032969,-0.97357,0.226,294.81,-0.54455,-0.17211,-0.82088,287,#28,-0.31702,0.92224,-0.2213,243.78,0.58539,0.37386,0.7194,258.2,0.7462,0.098518,-0.6584,288.69,#29,0.2258,0.46886,0.85392,181.57,-0.38914,-0.76018,0.52029,358.83,0.89307,-0.44978,0.010809,252.28,#30,0.88266,0.46953,0.021185,188.48,-0.20798,0.43062,-0.87824,326.78,-0.42148,0.77079,0.47774,302.94,#31,0.021581,0.024476,-0.99947,93.438,0.74045,0.67133,0.032428,159.84,0.67176,-0.74076,-0.0036349,622.52,#32,0.19535,0.95823,-0.2089,113.4,0.022341,-0.2173,-0.97585,296.31,-0.98048,0.18597,-0.063859,225.05,#33,-0.62752,-0.094022,0.77291,165.23,0.43447,-0.86605,0.24739,322.15,0.64611,0.49104,0.58431,227.33,#34,-0.091532,0.99355,0.066872,199.9,0.95992,0.07017,0.27135,298.28,0.26491,0.089029,-0.96016,235.95,#35,-0.32465,-0.18834,0.92689,165.98,-0.87839,-0.3034,-0.36931,320.99,0.35077,-0.93407,-0.066937,226.93 |
| 18679 | | |
| 18680 | | > ui mousemode right "rotate selected models" |
| 18681 | | |
| 18682 | | > view matrix models |
| 18683 | | > #24,-0.31794,-0.62339,-0.71435,537.58,0.87687,-0.47988,0.028498,234.39,-0.36057,-0.61733,0.6992,309.16,#26,0.071957,-0.97447,-0.21266,154.27,0.94616,-0.00077428,0.32369,257.12,-0.31559,-0.22451,0.92195,256.03,#27,0.70339,-0.22333,-0.67481,185.37,0.025786,-0.94072,0.33821,291.76,-0.71034,-0.25529,-0.65593,280.5,#28,-0.12907,0.93721,-0.32401,244.81,0.48816,0.34447,0.8019,254.34,0.86315,-0.05467,-0.50197,264.39,#29,0.39132,0.33217,0.85822,180.61,-0.50498,-0.70212,0.50201,359.74,0.76933,-0.62983,-0.10701,254.8,#30,0.7654,0.63804,0.084061,196.64,-0.16435,0.32008,-0.93303,321.29,-0.62221,0.70033,0.34985,298.46,#31,0.19262,-0.10315,-0.97584,163.72,0.64663,0.76135,0.047159,115.69,0.73809,-0.64009,0.21335,607.78,#32,-0.013478,0.966,-0.25818,105.71,0.14654,-0.25351,-0.95617,302.27,-0.98911,-0.050721,-0.13814,235.19,#33,-0.45966,-0.025197,0.88774,157.9,0.35603,-0.92098,0.15821,326.84,0.81361,0.38879,0.43231,229.56,#34,0.0060954,0.99222,-0.12435,192.58,0.91866,0.043566,0.39265,301.56,0.39501,-0.11663,-0.91124,227.57,#35,-0.28039,-0.3922,0.8761,158.5,-0.91166,-0.17685,-0.37094,325.74,0.30043,-0.90272,-0.30797,228.86 |
| 18684 | | |
| 18685 | | > view matrix models |
| 18686 | | > #24,-0.318,-0.66115,-0.67953,537.37,0.89087,-0.4536,0.024438,226.91,-0.32439,-0.5976,0.73324,289.52,#26,0.074854,-0.98391,-0.16225,152.46,0.95205,0.022113,0.30513,257.79,-0.29663,-0.17731,0.93839,255.44,#27,0.66908,-0.25314,-0.69875,185.34,0.030287,-0.93013,0.36597,291.26,-0.74257,-0.26603,-0.61467,279.17,#28,-0.078436,0.93993,-0.33223,243.23,0.46945,0.32882,0.81945,253.18,0.87947,-0.091692,-0.46704,259.36,#29,0.41786,0.28831,0.86155,180.67,-0.53032,-0.69258,0.48897,359.91,0.73767,-0.66122,-0.1365,255.32,#30,0.73159,0.67669,0.082843,198.02,-0.163,0.29161,-0.94255,320.14,-0.66197,0.67606,0.32364,297.25,#31,0.23989,-0.11902,-0.96348,175.98,0.62509,0.77828,0.059493,107.77,0.74278,-0.61653,0.2611,602.94,#32,-0.05783,0.95748,-0.28266,103.83,0.17056,-0.26949,-0.94778,304.29,-0.98365,-0.10302,-0.14772,238,#33,-0.41347,-0.024186,0.9102,156.16,0.3445,-0.92949,0.1318,328.05,0.84283,0.36806,0.39264,230.45,#34,0.042438,0.98618,-0.16015,190.21,0.90861,0.028565,0.41667,302.2,0.41548,-0.1632,-0.89484,226.21,#35,-0.28307,-0.4381,0.85319,156.7,-0.91347,-0.14798,-0.37906,326.95,0.29232,-0.88666,-0.3583,229.7 |
| 18687 | | |
| 18688 | | > ui mousemode right "translate selected models" |
| 18689 | | |
| 18690 | | > view matrix models |
| 18691 | | > #24,-0.318,-0.66115,-0.67953,534.65,0.89087,-0.4536,0.024438,225.83,-0.32439,-0.5976,0.73324,288.89,#26,0.074854,-0.98391,-0.16225,149.74,0.95205,0.022113,0.30513,256.71,-0.29663,-0.17731,0.93839,254.81,#27,0.66908,-0.25314,-0.69875,182.62,0.030287,-0.93013,0.36597,290.18,-0.74257,-0.26603,-0.61467,278.55,#28,-0.078436,0.93993,-0.33223,240.51,0.46945,0.32882,0.81945,252.11,0.87947,-0.091692,-0.46704,258.73,#29,0.41786,0.28831,0.86155,177.94,-0.53032,-0.69258,0.48897,358.83,0.73767,-0.66122,-0.1365,254.7,#30,0.73159,0.67669,0.082843,195.3,-0.163,0.29161,-0.94255,319.06,-0.66197,0.67606,0.32364,296.62,#31,0.23989,-0.11902,-0.96348,173.25,0.62509,0.77828,0.059493,106.69,0.74278,-0.61653,0.2611,602.32,#32,-0.05783,0.95748,-0.28266,101.11,0.17056,-0.26949,-0.94778,303.22,-0.98365,-0.10302,-0.14772,237.38,#33,-0.41347,-0.024186,0.9102,153.44,0.3445,-0.92949,0.1318,326.97,0.84283,0.36806,0.39264,229.82,#34,0.042438,0.98618,-0.16015,187.49,0.90861,0.028565,0.41667,301.13,0.41548,-0.1632,-0.89484,225.58,#35,-0.28307,-0.4381,0.85319,153.98,-0.91347,-0.14798,-0.37906,325.87,0.29232,-0.88666,-0.3583,229.07 |
| 18692 | | |
| 18693 | | > fitmap #24 inMap #25 |
| 18694 | | |
| 18695 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339 |
| 18696 | | points |
| 18697 | | correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 |
| 18698 | | steps = 156, shift = 9.24, angle = 13 degrees |
| 18699 | | |
| 18700 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 18701 | | (#25) coordinates: |
| 18702 | | Matrix rotation and translation |
| 18703 | | -0.53654733 -0.84379164 -0.01151613 402.23913730 |
| 18704 | | 0.84348563 -0.53666482 0.02286592 56.40575565 |
| 18705 | | -0.02547438 0.00255495 0.99967221 -108.72343203 |
| 18706 | | Axis -0.01203643 0.00827176 0.99989335 |
| 18707 | | Axis point 184.72256227 138.71080164 0.00000000 |
| 18708 | | Rotation angle (degrees) 122.46402662 |
| 18709 | | Shift along axis -113.08678508 |
| 18710 | | |
| 18711 | | |
| 18712 | | > fitmap #24 inMap #25 |
| 18713 | | |
| 18714 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339 |
| 18715 | | points |
| 18716 | | correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 |
| 18717 | | steps = 156, shift = 9.24, angle = 13 degrees |
| 18718 | | |
| 18719 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 18720 | | (#25) coordinates: |
| 18721 | | Matrix rotation and translation |
| 18722 | | -0.53654733 -0.84379164 -0.01151613 402.23913730 |
| 18723 | | 0.84348563 -0.53666482 0.02286592 56.40575565 |
| 18724 | | -0.02547438 0.00255495 0.99967221 -108.72343203 |
| 18725 | | Axis -0.01203643 0.00827176 0.99989335 |
| 18726 | | Axis point 184.72256227 138.71080164 0.00000000 |
| 18727 | | Rotation angle (degrees) 122.46402662 |
| 18728 | | Shift along axis -113.08678508 |
| 18729 | | |
| 18730 | | |
| 18731 | | > ui mousemode right "rotate selected models" |
| 18732 | | |
| 18733 | | > view matrix models |
| 18734 | | > #24,-0.034061,-0.79091,-0.61099,480.89,0.82668,-0.36585,0.4275,133.68,-0.56164,-0.49053,0.66629,336.22,#26,0.3589,-0.93305,-0.024816,124.1,0.76749,0.27987,0.57674,272.77,-0.53118,-0.22604,0.81655,275.99,#27,0.6179,-0.54129,-0.57027,166.65,-0.37675,-0.84044,0.38952,299.34,-0.69012,-0.025833,-0.72323,291.76,#28,0.10412,0.99173,-0.075049,208.94,0.68508,-0.016817,0.72827,241.33,0.72098,-0.12724,-0.68117,285.52,#29,0.25659,0.032874,0.96596,182.88,-0.41959,-0.89654,0.14197,357.18,0.87069,-0.44173,-0.21625,250.58,#30,0.6195,0.75767,-0.20531,188.38,-0.55139,0.23384,-0.80081,326.53,-0.55874,0.60931,0.56264,302.27,#31,0.4501,0.10904,-0.8863,111.8,0.69193,0.58482,0.42334,220.21,0.56449,-0.8038,0.18778,651.36,#32,-0.036515,0.82041,-0.57061,91.92,-0.085892,-0.57145,-0.81613,325.77,-0.99564,0.019209,0.091333,244.59,#33,-0.25427,-0.30119,0.91904,148.75,0.66572,-0.74382,-0.059587,329.16,0.70155,0.59667,0.38964,233.71,#34,0.33993,0.93894,-0.053291,172.81,0.92587,-0.32419,0.19408,293.84,0.16495,-0.11532,-0.97954,238.09,#35,-0.54454,-0.49376,0.678,148.89,-0.66854,-0.23262,-0.70636,327.79,0.50649,-0.83791,-0.20343,233.3 |
| 18735 | | |
| 18736 | | > ui mousemode right "translate selected models" |
| 18737 | | |
| 18738 | | > view matrix models |
| 18739 | | > #24,-0.034061,-0.79091,-0.61099,485.46,0.82668,-0.36585,0.4275,136.38,-0.56164,-0.49053,0.66629,336.67,#26,0.3589,-0.93305,-0.024816,128.67,0.76749,0.27987,0.57674,275.48,-0.53118,-0.22604,0.81655,276.44,#27,0.6179,-0.54129,-0.57027,171.22,-0.37675,-0.84044,0.38952,302.05,-0.69012,-0.025833,-0.72323,292.22,#28,0.10412,0.99173,-0.075049,213.51,0.68508,-0.016817,0.72827,244.03,0.72098,-0.12724,-0.68117,285.97,#29,0.25659,0.032874,0.96596,187.45,-0.41959,-0.89654,0.14197,359.88,0.87069,-0.44173,-0.21625,251.03,#30,0.6195,0.75767,-0.20531,192.95,-0.55139,0.23384,-0.80081,329.24,-0.55874,0.60931,0.56264,302.72,#31,0.4501,0.10904,-0.8863,116.36,0.69193,0.58482,0.42334,222.92,0.56449,-0.8038,0.18778,651.81,#32,-0.036515,0.82041,-0.57061,96.489,-0.085892,-0.57145,-0.81613,328.47,-0.99564,0.019209,0.091333,245.04,#33,-0.25427,-0.30119,0.91904,153.32,0.66572,-0.74382,-0.059587,331.87,0.70155,0.59667,0.38964,234.16,#34,0.33993,0.93894,-0.053291,177.38,0.92587,-0.32419,0.19408,296.55,0.16495,-0.11532,-0.97954,238.54,#35,-0.54454,-0.49376,0.678,153.46,-0.66854,-0.23262,-0.70636,330.5,0.50649,-0.83791,-0.20343,233.75 |
| 18740 | | |
| 18741 | | > fitmap #24 inMap #25 |
| 18742 | | |
| 18743 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339 |
| 18744 | | points |
| 18745 | | correlation = 0.6995, correlation about mean = 0.3478, overlap = 18.84 |
| 18746 | | steps = 144, shift = 9.38, angle = 14.3 degrees |
| 18747 | | |
| 18748 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 18749 | | (#25) coordinates: |
| 18750 | | Matrix rotation and translation |
| 18751 | | -0.53634514 -0.84391968 -0.01155224 402.24655069 |
| 18752 | | 0.84361383 -0.53646365 0.02285743 56.32369233 |
| 18753 | | -0.02548720 0.00251385 0.99967199 -108.69945864 |
| 18754 | | Axis -0.01205393 0.00825671 0.99989326 |
| 18755 | | Axis point 184.74404153 138.70156827 0.00000000 |
| 18756 | | Rotation angle (degrees) 122.45033940 |
| 18757 | | Shift along axis -113.07146080 |
| 18758 | | |
| 18759 | | |
| 18760 | | > fitmap #24 inMap #25 |
| 18761 | | |
| 18762 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339 |
| 18763 | | points |
| 18764 | | correlation = 0.6995, correlation about mean = 0.3478, overlap = 18.84 |
| 18765 | | steps = 144, shift = 9.38, angle = 14.3 degrees |
| 18766 | | |
| 18767 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 18768 | | (#25) coordinates: |
| 18769 | | Matrix rotation and translation |
| 18770 | | -0.53634514 -0.84391968 -0.01155224 402.24655069 |
| 18771 | | 0.84361383 -0.53646365 0.02285743 56.32369233 |
| 18772 | | -0.02548720 0.00251385 0.99967199 -108.69945864 |
| 18773 | | Axis -0.01205393 0.00825671 0.99989326 |
| 18774 | | Axis point 184.74404153 138.70156827 0.00000000 |
| 18775 | | Rotation angle (degrees) 122.45033940 |
| 18776 | | Shift along axis -113.07146080 |
| 18777 | | |
| 18778 | | |
| 18779 | | > fitmap #24 inMap #25 |
| 18780 | | |
| 18781 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339 |
| 18782 | | points |
| 18783 | | correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 |
| 18784 | | steps = 136, shift = 9.38, angle = 14.3 degrees |
| 18785 | | |
| 18786 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 18787 | | (#25) coordinates: |
| 18788 | | Matrix rotation and translation |
| 18789 | | -0.53650770 -0.84381651 -0.01154089 402.24931528 |
| 18790 | | 0.84350890 -0.53662568 0.02292619 56.35897325 |
| 18791 | | -0.02553863 0.00256523 0.99967054 -108.70393002 |
| 18792 | | Axis -0.01206571 0.00829493 0.99989280 |
| 18793 | | Axis point 184.73746046 138.69652445 0.00000000 |
| 18794 | | Rotation angle (degrees) 122.46140825 |
| 18795 | | Shift along axis -113.07820510 |
| 18796 | | |
| 18797 | | |
| 18798 | | > fitmap #24 inMap #25 |
| 18799 | | |
| 18800 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339 |
| 18801 | | points |
| 18802 | | correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 |
| 18803 | | steps = 136, shift = 9.38, angle = 14.3 degrees |
| 18804 | | |
| 18805 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 18806 | | (#25) coordinates: |
| 18807 | | Matrix rotation and translation |
| 18808 | | -0.53650770 -0.84381651 -0.01154089 402.24931528 |
| 18809 | | 0.84350890 -0.53662568 0.02292619 56.35897325 |
| 18810 | | -0.02553863 0.00256523 0.99967054 -108.70393002 |
| 18811 | | Axis -0.01206571 0.00829493 0.99989280 |
| 18812 | | Axis point 184.73746046 138.69652445 0.00000000 |
| 18813 | | Rotation angle (degrees) 122.46140825 |
| 18814 | | Shift along axis -113.07820510 |
| 18815 | | |
| 18816 | | |
| 18817 | | > ui mousemode right "rotate selected models" |
| 18818 | | |
| 18819 | | > view matrix models |
| 18820 | | > #24,-0.098015,-0.80866,-0.58006,496.61,0.89947,-0.3214,0.29607,140.2,-0.42585,-0.49272,0.75886,285.85,#26,0.29784,-0.95457,0.0093976,132.24,0.85319,0.2706,0.44592,271.42,-0.4282,-0.12479,0.89503,268.87,#27,0.58371,-0.51366,-0.62883,174.82,-0.24207,-0.84933,0.46908,297.11,-0.77504,-0.12158,-0.62011,285.96,#28,0.12817,0.98133,-0.14343,218.51,0.57279,0.044817,0.81848,242.54,0.80962,-0.18705,-0.55635,268.43,#29,0.32662,0.033692,0.94456,186.4,-0.53431,-0.81777,0.21393,361.11,0.77964,-0.57456,-0.24909,253.2,#30,0.59967,0.78764,-0.14151,196.27,-0.43424,0.17174,-0.88427,323.31,-0.67218,0.59172,0.44501,299.18,#31,0.46278,0.03692,-0.88571,146.19,0.61782,0.70307,0.35212,162.58,0.63571,-0.71016,0.30256,631.88,#32,-0.09852,0.83841,-0.53606,96.336,0.063201,-0.53232,-0.84418,327.11,-0.99313,-0.11705,-0.00054379,247.9,#33,-0.22989,-0.2368,0.94397,152.19,0.54129,-0.83719,-0.078192,334.52,0.8088,0.49298,0.32064,234.31,#34,0.31909,0.93965,-0.12348,177.64,0.90422,-0.26283,0.3366,300,0.28383,-0.21906,-0.93351,231.81,#35,-0.48788,-0.53939,0.68632,152.35,-0.75967,-0.12493,-0.6382,333.23,0.42998,-0.83274,-0.3488,233.69 |
| 18821 | | |
| 18822 | | > fitmap #24 inMap #25 |
| 18823 | | |
| 18824 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339 |
| 18825 | | points |
| 18826 | | correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 |
| 18827 | | steps = 132, shift = 8.49, angle = 13.4 degrees |
| 18828 | | |
| 18829 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 18830 | | (#25) coordinates: |
| 18831 | | Matrix rotation and translation |
| 18832 | | -0.53648110 -0.84383349 -0.01153520 402.24959292 |
| 18833 | | 0.84352783 -0.53659914 0.02285101 56.36886561 |
| 18834 | | -0.02547223 0.00252887 0.99967233 -108.70832497 |
| 18835 | | Axis -0.01204245 0.00825878 0.99989338 |
| 18836 | | Axis point 184.73665226 138.70451360 0.00000000 |
| 18837 | | Rotation angle (degrees) 122.45954332 |
| 18838 | | Shift along axis -113.07526848 |
| 18839 | | |
| 18840 | | |
| 18841 | | > fitmap #24 inMap #25 |
| 18842 | | |
| 18843 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339 |
| 18844 | | points |
| 18845 | | correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 |
| 18846 | | steps = 132, shift = 8.49, angle = 13.4 degrees |
| 18847 | | |
| 18848 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 18849 | | (#25) coordinates: |
| 18850 | | Matrix rotation and translation |
| 18851 | | -0.53648110 -0.84383349 -0.01153520 402.24959292 |
| 18852 | | 0.84352783 -0.53659914 0.02285101 56.36886561 |
| 18853 | | -0.02547223 0.00252887 0.99967233 -108.70832497 |
| 18854 | | Axis -0.01204245 0.00825878 0.99989338 |
| 18855 | | Axis point 184.73665226 138.70451360 0.00000000 |
| 18856 | | Rotation angle (degrees) 122.45954332 |
| 18857 | | Shift along axis -113.07526848 |
| 18858 | | |
| 18859 | | |
| 18860 | | > ui mousemode right "translate selected models" |
| 18861 | | |
| 18862 | | > view matrix models |
| 18863 | | > #24,-0.098015,-0.80866,-0.58006,495.95,0.89947,-0.3214,0.29607,143.51,-0.42585,-0.49272,0.75886,283.31,#26,0.29784,-0.95457,0.0093976,131.58,0.85319,0.2706,0.44592,274.73,-0.4282,-0.12479,0.89503,266.33,#27,0.58371,-0.51366,-0.62883,174.16,-0.24207,-0.84933,0.46908,300.42,-0.77504,-0.12158,-0.62011,283.42,#28,0.12817,0.98133,-0.14343,217.85,0.57279,0.044817,0.81848,245.85,0.80962,-0.18705,-0.55635,265.9,#29,0.32662,0.033692,0.94456,185.74,-0.53431,-0.81777,0.21393,364.42,0.77964,-0.57456,-0.24909,250.66,#30,0.59967,0.78764,-0.14151,195.61,-0.43424,0.17174,-0.88427,326.62,-0.67218,0.59172,0.44501,296.64,#31,0.46278,0.03692,-0.88571,145.53,0.61782,0.70307,0.35212,165.89,0.63571,-0.71016,0.30256,629.35,#32,-0.09852,0.83841,-0.53606,95.675,0.063201,-0.53232,-0.84418,330.42,-0.99313,-0.11705,-0.00054379,245.36,#33,-0.22989,-0.2368,0.94397,151.53,0.54129,-0.83719,-0.078192,337.83,0.8088,0.49298,0.32064,231.77,#34,0.31909,0.93965,-0.12348,176.98,0.90422,-0.26283,0.3366,303.31,0.28383,-0.21906,-0.93351,229.27,#35,-0.48788,-0.53939,0.68632,151.69,-0.75967,-0.12493,-0.6382,336.54,0.42998,-0.83274,-0.3488,231.15 |
| 18864 | | |
| 18865 | | > fitmap #24 inMap #25 |
| 18866 | | |
| 18867 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339 |
| 18868 | | points |
| 18869 | | correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 |
| 18870 | | steps = 132, shift = 4.59, angle = 13.4 degrees |
| 18871 | | |
| 18872 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 18873 | | (#25) coordinates: |
| 18874 | | Matrix rotation and translation |
| 18875 | | -0.53645819 -0.84384808 -0.01153365 402.24487372 |
| 18876 | | 0.84354345 -0.53657630 0.02281051 56.39512313 |
| 18877 | | -0.02543729 0.00250775 0.99967327 -108.72632673 |
| 18878 | | Axis -0.01203076 0.00823885 0.99989369 |
| 18879 | | Axis point 184.72768613 138.71922847 0.00000000 |
| 18880 | | Rotation angle (degrees) 122.45795837 |
| 18881 | | Shift along axis -113.08944854 |
| 18882 | | |
| 18883 | | |
| 18884 | | > fitmap #24 inMap #25 |
| 18885 | | |
| 18886 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339 |
| 18887 | | points |
| 18888 | | correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 |
| 18889 | | steps = 132, shift = 4.59, angle = 13.4 degrees |
| 18890 | | |
| 18891 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 18892 | | (#25) coordinates: |
| 18893 | | Matrix rotation and translation |
| 18894 | | -0.53645819 -0.84384808 -0.01153365 402.24487372 |
| 18895 | | 0.84354345 -0.53657630 0.02281051 56.39512313 |
| 18896 | | -0.02543729 0.00250775 0.99967327 -108.72632673 |
| 18897 | | Axis -0.01203076 0.00823885 0.99989369 |
| 18898 | | Axis point 184.72768613 138.71922847 0.00000000 |
| 18899 | | Rotation angle (degrees) 122.45795837 |
| 18900 | | Shift along axis -113.08944854 |
| 18901 | | |
| 18902 | | |
| 18903 | | > fitmap #24 inMap #25 |
| 18904 | | |
| 18905 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339 |
| 18906 | | points |
| 18907 | | correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 |
| 18908 | | steps = 132, shift = 4.59, angle = 13.4 degrees |
| 18909 | | |
| 18910 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 18911 | | (#25) coordinates: |
| 18912 | | Matrix rotation and translation |
| 18913 | | -0.53645819 -0.84384808 -0.01153365 402.24487372 |
| 18914 | | 0.84354345 -0.53657630 0.02281051 56.39512313 |
| 18915 | | -0.02543729 0.00250775 0.99967327 -108.72632673 |
| 18916 | | Axis -0.01203076 0.00823885 0.99989369 |
| 18917 | | Axis point 184.72768613 138.71922847 0.00000000 |
| 18918 | | Rotation angle (degrees) 122.45795837 |
| 18919 | | Shift along axis -113.08944854 |
| 18920 | | |
| 18921 | | |
| 18922 | | > ui mousemode right "rotate selected models" |
| 18923 | | |
| 18924 | | > view matrix models |
| 18925 | | > #24,-0.11006,-0.73831,-0.66542,503.64,0.9284,-0.31542,0.19642,157.85,-0.35491,-0.59615,0.72017,296.32,#26,0.28628,-0.95278,-0.10125,135.42,0.90243,0.23262,0.36263,271.63,-0.32196,-0.19519,0.92642,254.61,#27,0.6674,-0.44915,-0.594,174.62,-0.14106,-0.85945,0.49137,297.77,-0.73122,-0.24415,-0.63695,277.97,#28,0.017389,0.99026,-0.13813,222.89,0.50254,0.11078,0.85743,247.28,0.86438,-0.084325,-0.49572,260.25,#29,0.28244,0.13568,0.94964,185.46,-0.58591,-0.75944,0.28277,364.98,0.75956,-0.63627,-0.135,252.11,#30,0.68485,0.71688,-0.13068,193.15,-0.34074,0.15652,-0.92704,323.7,-0.64411,0.6794,0.35146,295.44,#31,0.36369,0.062382,-0.92943,121.44,0.57991,0.76567,0.27831,131.09,0.729,-0.6402,0.24229,606.56,#32,-0.0079636,0.87551,-0.48313,98.447,0.14818,-0.47677,-0.86645,327.13,-0.98893,-0.07849,-0.12594,235.02,#33,-0.33653,-0.23267,0.91248,154.8,0.45333,-0.88935,-0.059584,338.54,0.82537,0.3936,0.40477,227.72,#34,0.23725,0.96992,-0.054447,182.36,0.88954,-0.19438,0.41344,305.71,0.39042,-0.14652,-0.9089,224.81,#35,-0.4808,-0.45018,0.75244,155.1,-0.8191,-0.075618,-0.56864,337.32,0.31289,-0.88973,-0.33239,227.01 |
| 18926 | | |
| 18927 | | > fitmap #24 inMap #25 |
| 18928 | | |
| 18929 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339 |
| 18930 | | points |
| 18931 | | correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 |
| 18932 | | steps = 124, shift = 4.61, angle = 10.3 degrees |
| 18933 | | |
| 18934 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 18935 | | (#25) coordinates: |
| 18936 | | Matrix rotation and translation |
| 18937 | | -0.53650604 -0.84381756 -0.01154095 402.24895802 |
| 18938 | | 0.84351159 -0.53662418 0.02286203 56.37899591 |
| 18939 | | -0.02548454 0.00253069 0.99967201 -108.71380566 |
| 18940 | | Axis -0.01204813 0.00826282 0.99989328 |
| 18941 | | Axis point 184.73362348 138.70556850 0.00000000 |
| 18942 | | Rotation angle (degrees) 122.46125127 |
| 18943 | | Shift along axis -113.08270294 |
| 18944 | | |
| 18945 | | |
| 18946 | | > fitmap #24 inMap #25 |
| 18947 | | |
| 18948 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339 |
| 18949 | | points |
| 18950 | | correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 |
| 18951 | | steps = 124, shift = 4.61, angle = 10.3 degrees |
| 18952 | | |
| 18953 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 18954 | | (#25) coordinates: |
| 18955 | | Matrix rotation and translation |
| 18956 | | -0.53650604 -0.84381756 -0.01154095 402.24895802 |
| 18957 | | 0.84351159 -0.53662418 0.02286203 56.37899591 |
| 18958 | | -0.02548454 0.00253069 0.99967201 -108.71380566 |
| 18959 | | Axis -0.01204813 0.00826282 0.99989328 |
| 18960 | | Axis point 184.73362348 138.70556850 0.00000000 |
| 18961 | | Rotation angle (degrees) 122.46125127 |
| 18962 | | Shift along axis -113.08270294 |
| 18963 | | |
| 18964 | | |
| 18965 | | > fitmap #24 inMap #25 |
| 18966 | | |
| 18967 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339 |
| 18968 | | points |
| 18969 | | correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 |
| 18970 | | steps = 124, shift = 4.61, angle = 10.3 degrees |
| 18971 | | |
| 18972 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 18973 | | (#25) coordinates: |
| 18974 | | Matrix rotation and translation |
| 18975 | | -0.53650604 -0.84381756 -0.01154095 402.24895802 |
| 18976 | | 0.84351159 -0.53662418 0.02286203 56.37899591 |
| 18977 | | -0.02548454 0.00253069 0.99967201 -108.71380566 |
| 18978 | | Axis -0.01204813 0.00826282 0.99989328 |
| 18979 | | Axis point 184.73362348 138.70556850 0.00000000 |
| 18980 | | Rotation angle (degrees) 122.46125127 |
| 18981 | | Shift along axis -113.08270294 |
| 18982 | | |
| 18983 | | |
| 18984 | | > ui mousemode right "rotate selected models" |
| 18985 | | |
| 18986 | | > view matrix models |
| 18987 | | > #24,-0.11762,-0.74001,-0.66223,504.98,0.93224,-0.31207,0.18315,159.26,-0.3422,-0.59582,0.72657,291.96,#26,0.27906,-0.95528,-0.097826,135.86,0.9082,0.22946,0.35003,271.38,-0.31193,-0.18652,0.93162,253.9,#27,0.66383,-0.44556,-0.60067,175.04,-0.12764,-0.85888,0.49602,297.44,-0.73691,-0.25261,-0.62702,277.36,#28,0.019617,0.98907,-0.14612,223.51,0.49143,0.11773,0.86293,247.48,0.8707,-0.088732,-0.48375,258.71,#29,0.29041,0.13632,0.94714,185.34,-0.59398,-0.75034,0.29012,365.05,0.75023,-0.64684,-0.13693,252.32,#30,0.68296,0.72,-0.12314,193.53,-0.32832,0.15199,-0.93226,323.26,-0.65251,0.67713,0.34019,295.06,#31,0.36464,0.054063,-0.92958,124.81,0.5726,0.77423,0.26964,126.22,0.73428,-0.63059,0.25136,604.08,#32,-0.014749,0.87781,-0.47879,98.446,0.16089,-0.47052,-0.8676,326.91,-0.98686,-0.089829,-0.13429,235.25,#33,-0.33423,-0.2251,0.91522,154.69,0.44063,-0.89572,-0.059389,338.74,0.83315,0.38342,0.39856,227.76,#34,0.23437,0.97015,-0.062306,182.42,0.88582,-0.18672,0.42481,306.12,0.4005,-0.15476,-0.90314,224.27,#35,-0.47411,-0.45504,0.75376,154.99,-0.82592,-0.066791,-0.55982,337.54,0.30509,-0.88796,-0.34416,227.04 |
| 18988 | | |
| 18989 | | > view matrix models |
| 18990 | | > #24,-0.087024,-0.76284,-0.64071,497.81,0.92608,-0.29899,0.23019,147.64,-0.36716,-0.57331,0.73246,291.85,#26,0.30889,-0.94878,-0.066387,132.77,0.88702,0.26219,0.38007,273.35,-0.3432,-0.17629,0.92257,257.03,#27,0.64431,-0.48387,-0.59223,173.38,-0.17511,-0.84716,0.50165,298.47,-0.74445,-0.21952,-0.63056,279.03,#28,0.055396,0.99112,-0.12089,219.47,0.51485,0.075387,0.85396,246.09,0.85549,-0.10955,-0.5061,261,#29,0.2807,0.094343,0.95515,185.88,-0.58354,-0.77333,0.24787,364.87,0.76203,-0.62694,-0.16202,251.85,#30,0.65706,0.73803,-0.15354,193.21,-0.37391,0.14221,-0.9165,324.02,-0.65457,0.65961,0.3694,295.64,#31,0.40074,0.072825,-0.91329,122.56,0.57819,0.75316,0.31376,138.78,0.7107,-0.6538,0.25971,611.44,#32,-0.02689,0.85665,-0.5152,97.237,0.13317,-0.50772,-0.85117,329.77,-0.99073,-0.091498,-0.10043,237.43,#33,-0.30083,-0.25315,0.91947,153.75,0.47724,-0.87469,-0.084676,339.13,0.82568,0.41333,0.38394,228.61,#34,0.27673,0.95892,-0.062381,180.1,0.88675,-0.22981,0.40107,305.33,0.37025,-0.1663,-0.91392,225.58,#35,-0.50063,-0.47392,0.72441,153.99,-0.79721,-0.073754,-0.59919,337.89,0.33739,-0.87747,-0.34089,227.92 |
| 18991 | | |
| 18992 | | > view matrix models |
| 18993 | | > #24,-0.065451,-0.65849,-0.74974,496.39,0.8672,-0.40923,0.28372,170.97,-0.49364,-0.6316,0.59783,361.87,#26,0.32374,-0.92125,-0.21559,136.16,0.85322,0.18579,0.48734,271.15,-0.40891,-0.34172,0.84618,259.54,#27,0.75306,-0.41508,-0.51049,172.15,-0.23043,-0.89313,0.38628,301,-0.61628,-0.17326,-0.76823,283.6,#28,-0.090217,0.99303,-0.0758,222.26,0.61924,0.11554,0.77666,249.4,0.78,0.02313,-0.62535,279.28,#29,0.18615,0.21387,0.95896,186.09,-0.46822,-0.83876,0.27795,364.11,0.86378,-0.50074,-0.055999,250.02,#30,0.75962,0.62693,-0.173,188.36,-0.41555,0.26325,-0.87064,329.47,-0.5003,0.73325,0.46049,299.37,#31,0.27018,0.14113,-0.95241,78.647,0.68301,0.66911,0.29291,181.23,0.6786,-0.72964,0.08439,623.44,#32,0.11482,0.87864,-0.46347,101.89,0.0075881,-0.46732,-0.88406,322.67,-0.99336,0.09799,-0.060325,227.9,#33,-0.43654,-0.27945,0.85519,158.71,0.55871,-0.82924,0.014229,333.95,0.70518,0.48401,0.51812,226.03,#34,0.18666,0.98067,0.058675,186.43,0.93968,-0.19565,0.28058,301.53,0.28664,0.0027619,-0.95804,231.21,#35,-0.51566,-0.33622,0.78807,159.09,-0.77549,-0.20793,-0.59614,332.65,0.3643,-0.91854,-0.15351,225.55 |
| 18994 | | |
| 18995 | | > fitmap #24 inMap #25 |
| 18996 | | |
| 18997 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339 |
| 18998 | | points |
| 18999 | | correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 |
| 19000 | | steps = 84, shift = 5.85, angle = 5.5 degrees |
| 19001 | | |
| 19002 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 19003 | | (#25) coordinates: |
| 19004 | | Matrix rotation and translation |
| 19005 | | -0.53650540 -0.84381796 -0.01154137 402.25060611 |
| 19006 | | 0.84351214 -0.53662357 0.02285614 56.38038132 |
| 19007 | | -0.02547979 0.00252715 0.99967214 -108.71183289 |
| 19008 | | Axis -0.01204673 0.00825976 0.99989332 |
| 19009 | | Axis point 184.73424112 138.70669247 0.00000000 |
| 19010 | | Rotation angle (degrees) 122.46120430 |
| 19011 | | Shift along axis -113.08035258 |
| 19012 | | |
| 19013 | | |
| 19014 | | > fitmap #24 inMap #25 |
| 19015 | | |
| 19016 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339 |
| 19017 | | points |
| 19018 | | correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 |
| 19019 | | steps = 84, shift = 5.85, angle = 5.5 degrees |
| 19020 | | |
| 19021 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 19022 | | (#25) coordinates: |
| 19023 | | Matrix rotation and translation |
| 19024 | | -0.53650540 -0.84381796 -0.01154137 402.25060611 |
| 19025 | | 0.84351214 -0.53662357 0.02285614 56.38038132 |
| 19026 | | -0.02547979 0.00252715 0.99967214 -108.71183289 |
| 19027 | | Axis -0.01204673 0.00825976 0.99989332 |
| 19028 | | Axis point 184.73424112 138.70669247 0.00000000 |
| 19029 | | Rotation angle (degrees) 122.46120430 |
| 19030 | | Shift along axis -113.08035258 |
| 19031 | | |
| 19032 | | |
| 19033 | | > fitmap #24 inMap #25 |
| 19034 | | |
| 19035 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339 |
| 19036 | | points |
| 19037 | | correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 |
| 19038 | | steps = 84, shift = 5.85, angle = 5.5 degrees |
| 19039 | | |
| 19040 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 19041 | | (#25) coordinates: |
| 19042 | | Matrix rotation and translation |
| 19043 | | -0.53650540 -0.84381796 -0.01154137 402.25060611 |
| 19044 | | 0.84351214 -0.53662357 0.02285614 56.38038132 |
| 19045 | | -0.02547979 0.00252715 0.99967214 -108.71183289 |
| 19046 | | Axis -0.01204673 0.00825976 0.99989332 |
| 19047 | | Axis point 184.73424112 138.70669247 0.00000000 |
| 19048 | | Rotation angle (degrees) 122.46120430 |
| 19049 | | Shift along axis -113.08035258 |
| 19050 | | |
| 19051 | | |
| 19052 | | > view matrix models |
| 19053 | | > #24,-0.072731,-0.72339,-0.6866,496.92,0.89048,-0.35714,0.28195,155.76,-0.44917,-0.5909,0.67014,327.71,#26,0.3213,-0.9385,-0.12644,133.58,0.85925,0.23279,0.45552,272.86,-0.39807,-0.25501,0.8812,260.32,#27,0.69042,-0.46171,-0.5569,172.53,-0.22803,-0.86949,0.43818,300.33,-0.68653,-0.17554,-0.7056,282.52,#28,-0.0020009,0.99525,-0.097335,220.12,0.58589,0.080046,0.80643,247.28,0.81039,-0.055414,-0.58327,271.82,#29,0.23863,0.13976,0.961,186.06,-0.51313,-0.82201,0.24696,364.37,0.82447,-0.55205,-0.12444,250.59,#30,0.69944,0.69476,-0.1676,191.06,-0.41834,0.20787,-0.88419,327.47,-0.57946,0.68855,0.43603,298.06,#31,0.351,0.10601,-0.93036,102.83,0.64173,0.69631,0.32145,168.53,0.68189,-0.70987,0.17637,623.62,#32,0.032855,0.86525,-0.50026,98.804,0.048761,-0.50132,-0.86389,326.92,-0.99827,0.0039902,-0.058661,233.88,#33,-0.35536,-0.27009,0.89486,155.67,0.54081,-0.84025,-0.038842,336.3,0.76239,0.47014,0.44466,227.73,#34,0.24535,0.96939,-0.0097327,182.46,0.91868,-0.22928,0.32164,302.75,0.30956,-0.087855,-0.94681,229.18,#35,-0.51313,-0.41838,0.74943,155.96,-0.77299,-0.15425,-0.61537,335.01,0.37306,-0.89508,-0.24426,227.16 |
| 19054 | | |
| 19055 | | > view matrix models |
| 19056 | | > #24,-0.088031,-0.70512,-0.7036,500.53,0.89357,-0.36806,0.25705,162.75,-0.44022,-0.60609,0.66247,330.39,#26,0.30583,-0.94,-0.15125,135.45,0.87151,0.21243,0.44198,271.58,-0.38333,-0.26698,0.88418,258.66,#27,0.70633,-0.43714,-0.55678,173.37,-0.20286,-0.87855,0.43242,299.75,-0.67819,-0.19248,-0.70923,281.77,#28,-0.029027,0.99368,-0.10847,222.42,0.5762,0.10531,0.81049,248.02,0.81679,-0.038977,-0.57562,271.23,#29,0.2387,0.16866,0.95634,185.79,-0.51661,-0.81183,0.27212,364.47,0.82227,-0.55901,-0.10665,250.78,#30,0.71845,0.67873,-0.15215,190.97,-0.39412,0.21699,-0.89307,327.15,-0.57314,0.7016,0.4234,297.91,#31,0.3244,0.099468,-0.94068,101.75,0.64226,0.70693,0.29624,162.3,0.69446,-0.70026,0.16544,620.24,#32,0.046915,0.87732,-0.4776,99.752,0.061159,-0.47975,-0.87527,325.06,-0.99702,0.011854,-0.076164,232.29,#33,-0.38038,-0.25622,0.88863,156.45,0.52294,-0.85209,-0.021834,335.92,0.76279,0.4564,0.4581,227.14,#34,0.21758,0.97604,-0.0032491,184.05,0.92082,-0.20417,0.33228,303.03,0.32366,-0.075292,-0.94317,228.63,#35,-0.49934,-0.40065,0.7682,156.78,-0.78975,-0.15415,-0.59374,334.65,0.3563,-0.90317,-0.23944,226.55 |
| 19057 | | |
| 19058 | | > view matrix models |
| 19059 | | > #24,-0.084825,-0.6944,-0.71457,500.11,0.8491,-0.42564,0.31283,171.88,-0.52138,-0.5802,0.62572,351.78,#26,0.30821,-0.93666,-0.16637,135.74,0.83441,0.18217,0.52017,271.77,-0.45691,-0.29914,0.8377,265.01,#27,0.71733,-0.43074,-0.54764,173.19,-0.2603,-0.89477,0.36282,302.13,-0.64629,-0.11772,-0.75396,286.01,#28,-0.043661,0.99373,-0.10289,222.6,0.64831,0.10654,0.75389,249.92,0.76012,-0.033788,-0.6489,280.97,#29,0.22821,0.18028,0.95678,185.82,-0.438,-0.85864,0.26626,363.82,0.86953,-0.47983,-0.11699,249.41,#30,0.7286,0.66716,-0.15507,190.44,-0.44108,0.28381,-0.85141,330.99,-0.52401,0.68873,0.50105,299.83,#31,0.31132,0.10732,-0.94423,96.984,0.70477,0.64045,0.30516,195.83,0.63748,-0.76046,0.12375,634.54,#32,0.061797,0.87891,-0.47297,100.24,-0.030012,-0.47203,-0.88107,322.43,-0.99764,0.068642,-0.0027922,233.34,#33,-0.39394,-0.25979,0.88166,156.96,0.58849,-0.80813,0.024826,333.07,0.70604,0.52862,0.47123,228.05,#34,0.20906,0.97785,0.0097648,184.66,0.94769,-0.20505,0.24463,300.6,0.24122,-0.041889,-0.96957,232.95,#35,-0.50161,-0.3863,0.77406,157.31,-0.75648,-0.23819,-0.60909,331.75,0.41967,-0.89109,-0.17275,227.59 |
| 19060 | | |
| 19061 | | > fitmap #24 inMap #25 |
| 19062 | | |
| 19063 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339 |
| 19064 | | points |
| 19065 | | correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 |
| 19066 | | steps = 84, shift = 5.82, angle = 5.72 degrees |
| 19067 | | |
| 19068 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 19069 | | (#25) coordinates: |
| 19070 | | Matrix rotation and translation |
| 19071 | | -0.53648914 -0.84382819 -0.01154928 402.25077995 |
| 19072 | | 0.84352286 -0.53660757 0.02283615 56.38489869 |
| 19073 | | -0.02546722 0.00250926 0.99967251 -108.71256506 |
| 19074 | | Axis -0.01204534 0.00824751 0.99989344 |
| 19075 | | Axis point 184.73317849 138.71088501 0.00000000 |
| 19076 | | Rotation angle (degrees) 122.46009692 |
| 19077 | | Shift along axis -113.08119373 |
| 19078 | | |
| 19079 | | |
| 19080 | | > fitmap #24 inMap #25 |
| 19081 | | |
| 19082 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339 |
| 19083 | | points |
| 19084 | | correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 |
| 19085 | | steps = 84, shift = 5.82, angle = 5.72 degrees |
| 19086 | | |
| 19087 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 19088 | | (#25) coordinates: |
| 19089 | | Matrix rotation and translation |
| 19090 | | -0.53648914 -0.84382819 -0.01154928 402.25077995 |
| 19091 | | 0.84352286 -0.53660757 0.02283615 56.38489869 |
| 19092 | | -0.02546722 0.00250926 0.99967251 -108.71256506 |
| 19093 | | Axis -0.01204534 0.00824751 0.99989344 |
| 19094 | | Axis point 184.73317849 138.71088501 0.00000000 |
| 19095 | | Rotation angle (degrees) 122.46009692 |
| 19096 | | Shift along axis -113.08119373 |
| 19097 | | |
| 19098 | | |
| 19099 | | > fitmap #24 inMap #25 |
| 19100 | | |
| 19101 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339 |
| 19102 | | points |
| 19103 | | correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 |
| 19104 | | steps = 84, shift = 5.82, angle = 5.72 degrees |
| 19105 | | |
| 19106 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 19107 | | (#25) coordinates: |
| 19108 | | Matrix rotation and translation |
| 19109 | | -0.53648914 -0.84382819 -0.01154928 402.25077995 |
| 19110 | | 0.84352286 -0.53660757 0.02283615 56.38489869 |
| 19111 | | -0.02546722 0.00250926 0.99967251 -108.71256506 |
| 19112 | | Axis -0.01204534 0.00824751 0.99989344 |
| 19113 | | Axis point 184.73317849 138.71088501 0.00000000 |
| 19114 | | Rotation angle (degrees) 122.46009692 |
| 19115 | | Shift along axis -113.08119373 |
| 19116 | | |
| 19117 | | |
| 19118 | | > fitmap #24 inMap #25 |
| 19119 | | |
| 19120 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339 |
| 19121 | | points |
| 19122 | | correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 |
| 19123 | | steps = 84, shift = 5.82, angle = 5.72 degrees |
| 19124 | | |
| 19125 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 19126 | | (#25) coordinates: |
| 19127 | | Matrix rotation and translation |
| 19128 | | -0.53648914 -0.84382819 -0.01154928 402.25077995 |
| 19129 | | 0.84352286 -0.53660757 0.02283615 56.38489869 |
| 19130 | | -0.02546722 0.00250926 0.99967251 -108.71256506 |
| 19131 | | Axis -0.01204534 0.00824751 0.99989344 |
| 19132 | | Axis point 184.73317849 138.71088501 0.00000000 |
| 19133 | | Rotation angle (degrees) 122.46009692 |
| 19134 | | Shift along axis -113.08119373 |
| 19135 | | |
| 19136 | | |
| 19137 | | > fitmap #24 inMap #25 |
| 19138 | | |
| 19139 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339 |
| 19140 | | points |
| 19141 | | correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 |
| 19142 | | steps = 84, shift = 5.82, angle = 5.72 degrees |
| 19143 | | |
| 19144 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 19145 | | (#25) coordinates: |
| 19146 | | Matrix rotation and translation |
| 19147 | | -0.53648914 -0.84382819 -0.01154928 402.25077995 |
| 19148 | | 0.84352286 -0.53660757 0.02283615 56.38489869 |
| 19149 | | -0.02546722 0.00250926 0.99967251 -108.71256506 |
| 19150 | | Axis -0.01204534 0.00824751 0.99989344 |
| 19151 | | Axis point 184.73317849 138.71088501 0.00000000 |
| 19152 | | Rotation angle (degrees) 122.46009692 |
| 19153 | | Shift along axis -113.08119373 |
| 19154 | | |
| 19155 | | |
| 19156 | | > view matrix models |
| 19157 | | > #24,-0.0884,-0.65051,-0.75434,501.02,0.86741,-0.42256,0.26275,178.21,-0.48967,-0.63109,0.60162,360.03,#26,0.30132,-0.92673,-0.22446,138.09,0.86261,0.16461,0.47834,269.97,-0.40634,-0.33775,0.84901,259.37,#27,0.75629,-0.39371,-0.52251,173.42,-0.20932,-0.90229,0.37691,300.6,-0.61985,-0.17568,-0.7648,283.44,#28,-0.10258,0.98998,-0.096996,224.77,0.61354,0.13972,0.7772,250.26,0.78297,0.020217,-0.62173,278.73,#29,0.20061,0.23256,0.95167,185.7,-0.46716,-0.83115,0.30158,364.16,0.86111,-0.50508,-0.058093,250.08,#30,0.76779,0.62289,-0.15001,188.99,-0.39471,0.27542,-0.87656,329.38,-0.50469,0.73222,0.45733,299.27,#31,0.25579,0.12213,-0.95899,84.082,0.68655,0.67544,0.26914,177.13,0.68061,-0.72723,0.08892,623.08,#32,0.11108,0.89015,-0.44191,102.46,0.014591,-0.44608,-0.89488,320.77,-0.9937,0.092959,-0.06254,228.07,#33,-0.44758,-0.25736,0.85641,158.98,0.54487,-0.83787,0.032978,333.44,0.70908,0.48139,0.51524,226.06,#34,0.16462,0.98517,0.048402,187.5,0.94275,-0.17159,0.28598,301.7,0.29004,-0.0014478,-0.95701,231,#35,-0.49523,-0.33427,0.80188,159.39,-0.78941,-0.21222,-0.57601,332.16,0.36272,-0.91827,-0.15878,225.56 |
| 19158 | | |
| 19159 | | > view matrix models |
| 19160 | | > #24,-0.10425,-0.66336,-0.741,504.21,0.87838,-0.41085,0.24422,177.51,-0.46645,-0.62542,0.62552,348.35,#26,0.28737,-0.93532,-0.20641,138.54,0.87369,0.16765,0.45669,269.69,-0.39254,-0.31157,0.86535,258.58,#27,0.74226,-0.39345,-0.54245,174.28,-0.19037,-0.89994,0.39226,299.92,-0.6425,-0.1879,-0.74289,282.53,#28,-0.086797,0.9895,-0.11557,225.75,0.59409,0.14453,0.79131,249.99,0.7997,2.684e-05,-0.6004,275.39,#29,0.22338,0.22442,0.94855,185.46,-0.48653,-0.81757,0.30801,364.33,0.84463,-0.53029,-0.073439,250.43,#30,0.7574,0.63888,-0.13482,190.08,-0.37839,0.26119,-0.88803,328.4,-0.53214,0.72361,0.43957,298.68,#31,0.26867,0.10146,-0.95787,93.681,0.67145,0.69328,0.26177,167.89,0.69063,-0.71349,0.11814,621.14,#32,0.087235,0.89426,-0.43897,101.92,0.038941,-0.44337,-0.89549,321.04,-0.99543,0.061025,-0.0735,229.37,#33,-0.43313,-0.24174,0.86831,158.31,0.52534,-0.85051,0.025262,334.05,0.7324,0.4671,0.49538,226.32,#34,0.16697,0.98567,0.024141,187.1,0.93642,-0.16619,0.30903,302.35,0.30861,-0.028992,-0.95075,229.82,#35,-0.48262,-0.3551,0.80062,158.72,-0.80052,-0.19201,-0.56772,332.78,0.35532,-0.9149,-0.19159,225.78 |
| 19161 | | |
| 19162 | | > ui mousemode right "translate selected models" |
| 19163 | | |
| 19164 | | > view matrix models |
| 19165 | | > #24,-0.10425,-0.66336,-0.741,503.09,0.87838,-0.41085,0.24422,177.35,-0.46645,-0.62542,0.62552,349.53,#26,0.28737,-0.93532,-0.20641,137.42,0.87369,0.16765,0.45669,269.53,-0.39254,-0.31157,0.86535,259.76,#27,0.74226,-0.39345,-0.54245,173.16,-0.19037,-0.89994,0.39226,299.76,-0.6425,-0.1879,-0.74289,283.71,#28,-0.086797,0.9895,-0.11557,224.63,0.59409,0.14453,0.79131,249.83,0.7997,2.684e-05,-0.6004,276.57,#29,0.22338,0.22442,0.94855,184.33,-0.48653,-0.81757,0.30801,364.17,0.84463,-0.53029,-0.073439,251.61,#30,0.7574,0.63888,-0.13482,188.96,-0.37839,0.26119,-0.88803,328.24,-0.53214,0.72361,0.43957,299.86,#31,0.26867,0.10146,-0.95787,92.56,0.67145,0.69328,0.26177,167.73,0.69063,-0.71349,0.11814,622.32,#32,0.087235,0.89426,-0.43897,100.8,0.038941,-0.44337,-0.89549,320.88,-0.99543,0.061025,-0.0735,230.55,#33,-0.43313,-0.24174,0.86831,157.19,0.52534,-0.85051,0.025262,333.9,0.7324,0.4671,0.49538,227.5,#34,0.16697,0.98567,0.024141,185.98,0.93642,-0.16619,0.30903,302.19,0.30861,-0.028992,-0.95075,231,#35,-0.48262,-0.3551,0.80062,157.6,-0.80052,-0.19201,-0.56772,332.62,0.35532,-0.9149,-0.19159,226.96 |
| 19166 | | |
| 19167 | | > fitmap #24 inMap #25 |
| 19168 | | |
| 19169 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339 |
| 19170 | | points |
| 19171 | | correlation = 0.6996, correlation about mean = 0.348, overlap = 18.84 |
| 19172 | | steps = 68, shift = 5.69, angle = 3.52 degrees |
| 19173 | | |
| 19174 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 19175 | | (#25) coordinates: |
| 19176 | | Matrix rotation and translation |
| 19177 | | -0.53640743 -0.84387973 -0.01157876 402.25402221 |
| 19178 | | 0.84357694 -0.53652689 0.02273415 56.39638517 |
| 19179 | | -0.02539720 0.00242719 0.99967449 -108.72602321 |
| 19180 | | Axis -0.01203279 0.00818805 0.99989408 |
| 19181 | | Axis point 184.73226063 138.72732910 0.00000000 |
| 19182 | | Rotation angle (degrees) 122.45451567 |
| 19183 | | Shift along axis -113.09296706 |
| 19184 | | |
| 19185 | | |
| 19186 | | > fitmap #24 inMap #25 |
| 19187 | | |
| 19188 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339 |
| 19189 | | points |
| 19190 | | correlation = 0.6996, correlation about mean = 0.348, overlap = 18.84 |
| 19191 | | steps = 68, shift = 5.69, angle = 3.52 degrees |
| 19192 | | |
| 19193 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 19194 | | (#25) coordinates: |
| 19195 | | Matrix rotation and translation |
| 19196 | | -0.53640743 -0.84387973 -0.01157876 402.25402221 |
| 19197 | | 0.84357694 -0.53652689 0.02273415 56.39638517 |
| 19198 | | -0.02539720 0.00242719 0.99967449 -108.72602321 |
| 19199 | | Axis -0.01203279 0.00818805 0.99989408 |
| 19200 | | Axis point 184.73226063 138.72732910 0.00000000 |
| 19201 | | Rotation angle (degrees) 122.45451567 |
| 19202 | | Shift along axis -113.09296706 |
| 19203 | | |
| 19204 | | |
| 19205 | | > fitmap #24 inMap #25 |
| 19206 | | |
| 19207 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339 |
| 19208 | | points |
| 19209 | | correlation = 0.6996, correlation about mean = 0.348, overlap = 18.84 |
| 19210 | | steps = 68, shift = 5.69, angle = 3.52 degrees |
| 19211 | | |
| 19212 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 19213 | | (#25) coordinates: |
| 19214 | | Matrix rotation and translation |
| 19215 | | -0.53640743 -0.84387973 -0.01157876 402.25402221 |
| 19216 | | 0.84357694 -0.53652689 0.02273415 56.39638517 |
| 19217 | | -0.02539720 0.00242719 0.99967449 -108.72602321 |
| 19218 | | Axis -0.01203279 0.00818805 0.99989408 |
| 19219 | | Axis point 184.73226063 138.72732910 0.00000000 |
| 19220 | | Rotation angle (degrees) 122.45451567 |
| 19221 | | Shift along axis -113.09296706 |
| 19222 | | |
| 19223 | | |
| 19224 | | > fitmap #24 inMap #25 |
| 19225 | | |
| 19226 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339 |
| 19227 | | points |
| 19228 | | correlation = 0.6996, correlation about mean = 0.348, overlap = 18.84 |
| 19229 | | steps = 68, shift = 5.69, angle = 3.52 degrees |
| 19230 | | |
| 19231 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 19232 | | (#25) coordinates: |
| 19233 | | Matrix rotation and translation |
| 19234 | | -0.53640743 -0.84387973 -0.01157876 402.25402221 |
| 19235 | | 0.84357694 -0.53652689 0.02273415 56.39638517 |
| 19236 | | -0.02539720 0.00242719 0.99967449 -108.72602321 |
| 19237 | | Axis -0.01203279 0.00818805 0.99989408 |
| 19238 | | Axis point 184.73226063 138.72732910 0.00000000 |
| 19239 | | Rotation angle (degrees) 122.45451567 |
| 19240 | | Shift along axis -113.09296706 |
| 19241 | | |
| 19242 | | |
| 19243 | | > fitmap #24 inMap #25 |
| 19244 | | |
| 19245 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339 |
| 19246 | | points |
| 19247 | | correlation = 0.6996, correlation about mean = 0.348, overlap = 18.84 |
| 19248 | | steps = 68, shift = 5.69, angle = 3.52 degrees |
| 19249 | | |
| 19250 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 19251 | | (#25) coordinates: |
| 19252 | | Matrix rotation and translation |
| 19253 | | -0.53640743 -0.84387973 -0.01157876 402.25402221 |
| 19254 | | 0.84357694 -0.53652689 0.02273415 56.39638517 |
| 19255 | | -0.02539720 0.00242719 0.99967449 -108.72602321 |
| 19256 | | Axis -0.01203279 0.00818805 0.99989408 |
| 19257 | | Axis point 184.73226063 138.72732910 0.00000000 |
| 19258 | | Rotation angle (degrees) 122.45451567 |
| 19259 | | Shift along axis -113.09296706 |
| 19260 | | |
| 19261 | | |
| 19262 | | > fitmap #24 inMap #25 |
| 19263 | | |
| 19264 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339 |
| 19265 | | points |
| 19266 | | correlation = 0.6996, correlation about mean = 0.348, overlap = 18.84 |
| 19267 | | steps = 68, shift = 5.69, angle = 3.52 degrees |
| 19268 | | |
| 19269 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 19270 | | (#25) coordinates: |
| 19271 | | Matrix rotation and translation |
| 19272 | | -0.53640743 -0.84387973 -0.01157876 402.25402221 |
| 19273 | | 0.84357694 -0.53652689 0.02273415 56.39638517 |
| 19274 | | -0.02539720 0.00242719 0.99967449 -108.72602321 |
| 19275 | | Axis -0.01203279 0.00818805 0.99989408 |
| 19276 | | Axis point 184.73226063 138.72732910 0.00000000 |
| 19277 | | Rotation angle (degrees) 122.45451567 |
| 19278 | | Shift along axis -113.09296706 |
| 19279 | | |
| 19280 | | |
| 19281 | | > ui mousemode right "rotate selected models" |
| 19282 | | |
| 19283 | | > view matrix models |
| 19284 | | > #24,-0.091059,-0.67112,-0.73573,500.47,0.87121,-0.41156,0.2676,173.94,-0.48239,-0.61661,0.62217,352.14,#26,0.30058,-0.93312,-0.19732,136.15,0.86157,0.17692,0.47581,270.33,-0.40908,-0.31302,0.85713,261.31,#27,0.73782,-0.40823,-0.53756,172.42,-0.21409,-0.8968,0.3872,300.41,-0.64014,-0.1706,-0.74907,284.63,#28,-0.075647,0.99169,-0.10404,223.06,0.61003,0.12856,0.78188,249.53,0.78876,-0.0043199,-0.61469,278.33,#29,0.21722,0.2102,0.95322,184.57,-0.47442,-0.8307,0.29129,364.03,0.85308,-0.51551,-0.080719,251.32,#30,0.75016,0.64444,-0.14819,188.71,-0.40026,0.26415,-0.8775,328.93,-0.52635,0.71758,0.4561,300.23,#31,0.2808,0.11116,-0.95331,90.388,0.67964,0.6783,0.27928,175.96,0.67767,-0.72633,0.11492,625.75,#32,0.085863,0.88714,-0.45344,100.3,0.019196,-0.45651,-0.88951,321.71,-0.99612,0.067671,-0.056227,231.21,#33,-0.42317,-0.25444,0.86959,156.89,0.54564,-0.83777,0.020399,333.76,0.72333,0.48312,0.49335,227.82,#34,0.1826,0.98281,0.027205,185.17,0.93913,-0.18254,0.29104,301.67,0.29101,-0.027596,-0.95632,231.86,#35,-0.49471,-0.35996,0.79101,157.28,-0.78597,-0.20308,-0.58397,332.47,0.37084,-0.9106,-0.18245,227.31 |
| 19285 | | |
| 19286 | | > ui mousemode right "translate selected models" |
| 19287 | | |
| 19288 | | > view matrix models |
| 19289 | | > #24,-0.091059,-0.67112,-0.73573,497.46,0.87121,-0.41156,0.2676,171.48,-0.48239,-0.61661,0.62217,352.28,#26,0.30058,-0.93312,-0.19732,133.14,0.86157,0.17692,0.47581,267.87,-0.40908,-0.31302,0.85713,261.45,#27,0.73782,-0.40823,-0.53756,169.41,-0.21409,-0.8968,0.3872,297.95,-0.64014,-0.1706,-0.74907,284.77,#28,-0.075647,0.99169,-0.10404,220.05,0.61003,0.12856,0.78188,247.07,0.78876,-0.0043199,-0.61469,278.47,#29,0.21722,0.2102,0.95322,181.56,-0.47442,-0.8307,0.29129,361.57,0.85308,-0.51551,-0.080719,251.47,#30,0.75016,0.64444,-0.14819,185.7,-0.40026,0.26415,-0.8775,326.47,-0.52635,0.71758,0.4561,300.37,#31,0.2808,0.11116,-0.95331,87.378,0.67964,0.6783,0.27928,173.5,0.67767,-0.72633,0.11492,625.89,#32,0.085863,0.88714,-0.45344,97.292,0.019196,-0.45651,-0.88951,319.25,-0.99612,0.067671,-0.056227,231.35,#33,-0.42317,-0.25444,0.86959,153.88,0.54564,-0.83777,0.020399,331.3,0.72333,0.48312,0.49335,227.97,#34,0.1826,0.98281,0.027205,182.16,0.93913,-0.18254,0.29104,299.21,0.29101,-0.027596,-0.95632,232,#35,-0.49471,-0.35996,0.79101,154.27,-0.78597,-0.20308,-0.58397,330.01,0.37084,-0.9106,-0.18245,227.45 |
| 19290 | | |
| 19291 | | > view matrix models |
| 19292 | | > #24,-0.091059,-0.67112,-0.73573,499.84,0.87121,-0.41156,0.2676,169.35,-0.48239,-0.61661,0.62217,356.4,#26,0.30058,-0.93312,-0.19732,135.52,0.86157,0.17692,0.47581,265.74,-0.40908,-0.31302,0.85713,265.57,#27,0.73782,-0.40823,-0.53756,171.79,-0.21409,-0.8968,0.3872,295.83,-0.64014,-0.1706,-0.74907,288.9,#28,-0.075647,0.99169,-0.10404,222.44,0.61003,0.12856,0.78188,244.95,0.78876,-0.0043199,-0.61469,282.59,#29,0.21722,0.2102,0.95322,183.94,-0.47442,-0.8307,0.29129,359.45,0.85308,-0.51551,-0.080719,255.59,#30,0.75016,0.64444,-0.14819,188.08,-0.40026,0.26415,-0.8775,324.34,-0.52635,0.71758,0.4561,304.49,#31,0.2808,0.11116,-0.95331,89.759,0.67964,0.6783,0.27928,171.37,0.67767,-0.72633,0.11492,630.02,#32,0.085863,0.88714,-0.45344,99.673,0.019196,-0.45651,-0.88951,317.12,-0.99612,0.067671,-0.056227,235.47,#33,-0.42317,-0.25444,0.86959,156.27,0.54564,-0.83777,0.020399,329.17,0.72333,0.48312,0.49335,232.09,#34,0.1826,0.98281,0.027205,184.54,0.93913,-0.18254,0.29104,297.08,0.29101,-0.027596,-0.95632,236.13,#35,-0.49471,-0.35996,0.79101,156.65,-0.78597,-0.20308,-0.58397,327.88,0.37084,-0.9106,-0.18245,231.58 |
| 19293 | | |
| 19294 | | > fitmap #24 inMap #25 |
| 19295 | | |
| 19296 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339 |
| 19297 | | points |
| 19298 | | correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 |
| 19299 | | steps = 76, shift = 11.3, angle = 4.11 degrees |
| 19300 | | |
| 19301 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 19302 | | (#25) coordinates: |
| 19303 | | Matrix rotation and translation |
| 19304 | | -0.53642473 -0.84386935 -0.01153372 402.24113850 |
| 19305 | | 0.84356452 -0.53654284 0.02281861 56.37220675 |
| 19306 | | -0.02544426 0.00251103 0.99967309 -108.72124741 |
| 19307 | | Axis -0.01203331 0.00824273 0.99989362 |
| 19308 | | Axis point 184.73115305 138.71203519 0.00000000 |
| 19309 | | Rotation angle (degrees) 122.45569249 |
| 19310 | | Shift along axis -113.08531389 |
| 19311 | | |
| 19312 | | |
| 19313 | | > fitmap #24 inMap #25 |
| 19314 | | |
| 19315 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339 |
| 19316 | | points |
| 19317 | | correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 |
| 19318 | | steps = 76, shift = 11.3, angle = 4.11 degrees |
| 19319 | | |
| 19320 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 19321 | | (#25) coordinates: |
| 19322 | | Matrix rotation and translation |
| 19323 | | -0.53642473 -0.84386935 -0.01153372 402.24113850 |
| 19324 | | 0.84356452 -0.53654284 0.02281861 56.37220675 |
| 19325 | | -0.02544426 0.00251103 0.99967309 -108.72124741 |
| 19326 | | Axis -0.01203331 0.00824273 0.99989362 |
| 19327 | | Axis point 184.73115305 138.71203519 0.00000000 |
| 19328 | | Rotation angle (degrees) 122.45569249 |
| 19329 | | Shift along axis -113.08531389 |
| 19330 | | |
| 19331 | | |
| 19332 | | > fitmap #24 inMap #25 |
| 19333 | | |
| 19334 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339 |
| 19335 | | points |
| 19336 | | correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 |
| 19337 | | steps = 40, shift = 0.011, angle = 0.00596 degrees |
| 19338 | | |
| 19339 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 19340 | | (#25) coordinates: |
| 19341 | | Matrix rotation and translation |
| 19342 | | -0.53649562 -0.84382413 -0.01154465 402.25064108 |
| 19343 | | 0.84351775 -0.53661382 0.02287794 56.37426930 |
| 19344 | | -0.02549998 0.00253580 0.99967160 -108.70923302 |
| 19345 | | Axis -0.01205444 0.00826972 0.99989315 |
| 19346 | | Axis point 184.73501117 138.70542498 0.00000000 |
| 19347 | | Rotation angle (degrees) 122.46055944 |
| 19348 | | Shift along axis -113.08032579 |
| 19349 | | |
| 19350 | | |
| 19351 | | > view matrix models |
| 19352 | | > #24,-0.091059,-0.67112,-0.73573,498.55,0.87121,-0.41156,0.2676,170.34,-0.48239,-0.61661,0.62217,354.34,#26,0.30058,-0.93312,-0.19732,134.23,0.86157,0.17692,0.47581,266.73,-0.40908,-0.31302,0.85713,263.51,#27,0.73782,-0.40823,-0.53756,170.51,-0.21409,-0.8968,0.3872,296.82,-0.64014,-0.1706,-0.74907,286.83,#28,-0.075647,0.99169,-0.10404,221.15,0.61003,0.12856,0.78188,245.94,0.78876,-0.0043199,-0.61469,280.53,#29,0.21722,0.2102,0.95322,182.65,-0.47442,-0.8307,0.29129,360.44,0.85308,-0.51551,-0.080719,253.52,#30,0.75016,0.64444,-0.14819,186.79,-0.40026,0.26415,-0.8775,325.33,-0.52635,0.71758,0.4561,302.43,#31,0.2808,0.11116,-0.95331,88.471,0.67964,0.6783,0.27928,172.36,0.67767,-0.72633,0.11492,627.95,#32,0.085863,0.88714,-0.45344,98.385,0.019196,-0.45651,-0.88951,318.11,-0.99612,0.067671,-0.056227,233.41,#33,-0.42317,-0.25444,0.86959,154.98,0.54564,-0.83777,0.020399,330.16,0.72333,0.48312,0.49335,230.02,#34,0.1826,0.98281,0.027205,183.25,0.93913,-0.18254,0.29104,298.07,0.29101,-0.027596,-0.95632,234.06,#35,-0.49471,-0.35996,0.79101,155.36,-0.78597,-0.20308,-0.58397,328.87,0.37084,-0.9106,-0.18245,229.51 |
| 19353 | | |
| 19354 | | > view matrix models |
| 19355 | | > #24,-0.091059,-0.67112,-0.73573,496.48,0.87121,-0.41156,0.2676,170.21,-0.48239,-0.61661,0.62217,352.81,#26,0.30058,-0.93312,-0.19732,132.16,0.86157,0.17692,0.47581,266.6,-0.40908,-0.31302,0.85713,261.98,#27,0.73782,-0.40823,-0.53756,168.43,-0.21409,-0.8968,0.3872,296.69,-0.64014,-0.1706,-0.74907,285.3,#28,-0.075647,0.99169,-0.10404,219.08,0.61003,0.12856,0.78188,245.81,0.78876,-0.0043199,-0.61469,279,#29,0.21722,0.2102,0.95322,180.58,-0.47442,-0.8307,0.29129,360.31,0.85308,-0.51551,-0.080719,251.99,#30,0.75016,0.64444,-0.14819,184.72,-0.40026,0.26415,-0.8775,325.2,-0.52635,0.71758,0.4561,300.89,#31,0.2808,0.11116,-0.95331,86.398,0.67964,0.6783,0.27928,172.23,0.67767,-0.72633,0.11492,626.42,#32,0.085863,0.88714,-0.45344,96.313,0.019196,-0.45651,-0.88951,317.98,-0.99612,0.067671,-0.056227,231.88,#33,-0.42317,-0.25444,0.86959,152.9,0.54564,-0.83777,0.020399,330.03,0.72333,0.48312,0.49335,228.49,#34,0.1826,0.98281,0.027205,181.18,0.93913,-0.18254,0.29104,297.94,0.29101,-0.027596,-0.95632,232.53,#35,-0.49471,-0.35996,0.79101,153.29,-0.78597,-0.20308,-0.58397,328.75,0.37084,-0.9106,-0.18245,227.98 |
| 19356 | | |
| 19357 | | > ui mousemode right "rotate selected models" |
| 19358 | | |
| 19359 | | > view matrix models |
| 19360 | | > #24,-0.096153,-0.71647,-0.69095,496.71,0.87125,-0.39627,0.28966,162.28,-0.48134,-0.57414,0.66233,335.25,#26,0.2987,-0.94482,-0.13449,130.36,0.85155,0.20024,0.48453,267.91,-0.43086,-0.25926,0.86437,265.2,#27,0.6934,-0.44084,-0.56996,168.71,-0.2363,-0.88638,0.3981,297.12,-0.68071,-0.14136,-0.71879,286.2,#28,-0.013536,0.99278,-0.11916,217.55,0.61519,0.10221,0.78172,244.89,0.78826,-0.062724,-0.61214,277.26,#29,0.25406,0.15796,0.9542,180.55,-0.47636,-0.83818,0.26558,360.25,0.84175,-0.52202,-0.1377,251.87,#30,0.70746,0.69186,-0.1443,186.62,-0.42225,0.25005,-0.87131,325.26,-0.56674,0.67735,0.46904,300.65,#31,0.33753,0.086382,-0.93734,103.46,0.67485,0.672,0.30494,176.34,0.65624,-0.73549,0.16853,632.23,#32,0.028137,0.87731,-0.4791,94.182,0.012652,-0.47957,-0.87741,320.09,-0.99952,0.018626,-0.024593,236.94,#33,-0.36585,-0.24772,0.8971,150.78,0.55976,-0.82866,-0.0005438,330.62,0.74352,0.50196,0.44183,230.2,#34,0.2238,0.97441,-0.020957,178.39,0.9352,-0.20864,0.28613,297.81,0.27443,-0.083635,-0.95796,232.77,#35,-0.49268,-0.41762,0.76345,151.1,-0.77098,-0.19736,-0.6055,329.32,0.40354,-0.88693,-0.22474,229.67 |
| 19361 | | |
| 19362 | | > view matrix models |
| 19363 | | > #24,-0.070397,-0.68065,-0.72922,492.25,0.83661,-0.43842,0.32845,169.89,-0.54326,-0.58695,0.6003,365.56,#26,0.3209,-0.92866,-0.18604,130.31,0.82297,0.17618,0.54007,268.15,-0.46877,-0.32642,0.8208,267.47,#27,0.73258,-0.42933,-0.52821,167.29,-0.27642,-0.89677,0.34553,298.95,-0.62203,-0.10712,-0.77563,288.66,#28,-0.061227,0.99446,-0.08548,216.71,0.66619,0.10449,0.73843,246.57,0.74326,-0.011735,-0.6689,286.08,#29,0.20589,0.19051,0.95985,180.93,-0.41756,-0.86999,0.26224,359.74,0.88502,-0.45478,-0.099575,250.94,#30,0.7405,0.65047,-0.16893,184.25,-0.45427,0.29923,-0.83911,328.11,-0.49527,0.6981,0.51707,302.22,#31,0.29677,0.12721,-0.94644,82.315,0.71929,0.62212,0.30917,201.04,0.62813,-0.77252,0.093124,637.62,#32,0.086338,0.87609,-0.47436,95.694,-0.053717,-0.47135,-0.88031,318.09,-0.99482,0.10149,0.0063652,233.74,#33,-0.41017,-0.27421,0.86981,152.56,0.60553,-0.79506,0.034902,328.53,0.68197,0.54101,0.49216,229.6,#34,0.20476,0.97822,0.034127,180.06,0.95288,-0.20719,0.22158,296.15,0.22382,-0.012852,-0.97454,235.96,#35,-0.51318,-0.36462,0.77698,152.91,-0.74571,-0.25877,-0.61397,327.2,0.42492,-0.89448,-0.13911,229.18 |
| 19364 | | |
| 19365 | | > fitmap #24 inMap #25 |
| 19366 | | |
| 19367 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339 |
| 19368 | | points |
| 19369 | | correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 |
| 19370 | | steps = 96, shift = 8.58, angle = 6.65 degrees |
| 19371 | | |
| 19372 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 19373 | | (#25) coordinates: |
| 19374 | | Matrix rotation and translation |
| 19375 | | -0.53648617 -0.84383021 -0.01153978 402.25143206 |
| 19376 | | 0.84352386 -0.53660426 0.02287710 56.36820755 |
| 19377 | | -0.02549668 0.00253916 0.99967168 -108.70823429 |
| 19378 | | Axis -0.01205186 0.00827059 0.99989317 |
| 19379 | | Axis point 184.73698445 138.70421395 0.00000000 |
| 19380 | | Rotation angle (degrees) 122.45991149 |
| 19381 | | Shift along axis -113.07830171 |
| 19382 | | |
| 19383 | | |
| 19384 | | > fitmap #24 inMap #25 |
| 19385 | | |
| 19386 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339 |
| 19387 | | points |
| 19388 | | correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 |
| 19389 | | steps = 96, shift = 8.58, angle = 6.65 degrees |
| 19390 | | |
| 19391 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 19392 | | (#25) coordinates: |
| 19393 | | Matrix rotation and translation |
| 19394 | | -0.53648617 -0.84383021 -0.01153978 402.25143206 |
| 19395 | | 0.84352386 -0.53660426 0.02287710 56.36820755 |
| 19396 | | -0.02549668 0.00253916 0.99967168 -108.70823429 |
| 19397 | | Axis -0.01205186 0.00827059 0.99989317 |
| 19398 | | Axis point 184.73698445 138.70421395 0.00000000 |
| 19399 | | Rotation angle (degrees) 122.45991149 |
| 19400 | | Shift along axis -113.07830171 |
| 19401 | | |
| 19402 | | |
| 19403 | | > fitmap #24 inMap #25 |
| 19404 | | |
| 19405 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339 |
| 19406 | | points |
| 19407 | | correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 |
| 19408 | | steps = 96, shift = 8.58, angle = 6.65 degrees |
| 19409 | | |
| 19410 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 19411 | | (#25) coordinates: |
| 19412 | | Matrix rotation and translation |
| 19413 | | -0.53648617 -0.84383021 -0.01153978 402.25143206 |
| 19414 | | 0.84352386 -0.53660426 0.02287710 56.36820755 |
| 19415 | | -0.02549668 0.00253916 0.99967168 -108.70823429 |
| 19416 | | Axis -0.01205186 0.00827059 0.99989317 |
| 19417 | | Axis point 184.73698445 138.70421395 0.00000000 |
| 19418 | | Rotation angle (degrees) 122.45991149 |
| 19419 | | Shift along axis -113.07830171 |
| 19420 | | |
| 19421 | | |
| 19422 | | > ui mousemode right "translate selected models" |
| 19423 | | |
| 19424 | | > view matrix models |
| 19425 | | > #24,-0.070397,-0.68065,-0.72922,494.95,0.83661,-0.43842,0.32845,171.78,-0.54326,-0.58695,0.6003,363.73,#26,0.3209,-0.92866,-0.18604,133.01,0.82297,0.17618,0.54007,270.03,-0.46877,-0.32642,0.8208,265.65,#27,0.73258,-0.42933,-0.52821,169.99,-0.27642,-0.89677,0.34553,300.84,-0.62203,-0.10712,-0.77563,286.84,#28,-0.061227,0.99446,-0.08548,219.41,0.66619,0.10449,0.73843,248.46,0.74326,-0.011735,-0.6689,284.25,#29,0.20589,0.19051,0.95985,183.63,-0.41756,-0.86999,0.26224,361.62,0.88502,-0.45478,-0.099575,249.12,#30,0.7405,0.65047,-0.16893,186.95,-0.45427,0.29923,-0.83911,330,-0.49527,0.6981,0.51707,300.4,#31,0.29677,0.12721,-0.94644,85.014,0.71929,0.62212,0.30917,202.92,0.62813,-0.77252,0.093124,635.8,#32,0.086338,0.87609,-0.47436,98.392,-0.053717,-0.47135,-0.88031,319.97,-0.99482,0.10149,0.0063652,231.91,#33,-0.41017,-0.27421,0.86981,155.25,0.60553,-0.79506,0.034902,330.41,0.68197,0.54101,0.49216,227.78,#34,0.20476,0.97822,0.034127,182.76,0.95288,-0.20719,0.22158,298.03,0.22382,-0.012852,-0.97454,234.13,#35,-0.51318,-0.36462,0.77698,155.61,-0.74571,-0.25877,-0.61397,329.09,0.42492,-0.89448,-0.13911,227.36 |
| 19426 | | |
| 19427 | | > fitmap #24 inMap #25 |
| 19428 | | |
| 19429 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339 |
| 19430 | | points |
| 19431 | | correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 |
| 19432 | | steps = 76, shift = 6.22, angle = 6.65 degrees |
| 19433 | | |
| 19434 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 19435 | | (#25) coordinates: |
| 19436 | | Matrix rotation and translation |
| 19437 | | -0.53648729 -0.84382948 -0.01154084 402.25291912 |
| 19438 | | 0.84352337 -0.53660543 0.02286769 56.36357459 |
| 19439 | | -0.02548931 0.00253326 0.99967188 -108.70723034 |
| 19440 | | Axis -0.01204980 0.00826560 0.99989324 |
| 19441 | | Axis point 184.73930075 138.70193089 0.00000000 |
| 19442 | | Rotation angle (degrees) 122.45998234 |
| 19443 | | Shift along axis -113.07681168 |
| 19444 | | |
| 19445 | | |
| 19446 | | > fitmap #24 inMap #25 |
| 19447 | | |
| 19448 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339 |
| 19449 | | points |
| 19450 | | correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 |
| 19451 | | steps = 76, shift = 6.22, angle = 6.65 degrees |
| 19452 | | |
| 19453 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 19454 | | (#25) coordinates: |
| 19455 | | Matrix rotation and translation |
| 19456 | | -0.53648729 -0.84382948 -0.01154084 402.25291912 |
| 19457 | | 0.84352337 -0.53660543 0.02286769 56.36357459 |
| 19458 | | -0.02548931 0.00253326 0.99967188 -108.70723034 |
| 19459 | | Axis -0.01204980 0.00826560 0.99989324 |
| 19460 | | Axis point 184.73930075 138.70193089 0.00000000 |
| 19461 | | Rotation angle (degrees) 122.45998234 |
| 19462 | | Shift along axis -113.07681168 |
| 19463 | | |
| 19464 | | |
| 19465 | | > fitmap #24 inMap #25 |
| 19466 | | |
| 19467 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339 |
| 19468 | | points |
| 19469 | | correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 |
| 19470 | | steps = 76, shift = 6.22, angle = 6.65 degrees |
| 19471 | | |
| 19472 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 19473 | | (#25) coordinates: |
| 19474 | | Matrix rotation and translation |
| 19475 | | -0.53648729 -0.84382948 -0.01154084 402.25291912 |
| 19476 | | 0.84352337 -0.53660543 0.02286769 56.36357459 |
| 19477 | | -0.02548931 0.00253326 0.99967188 -108.70723034 |
| 19478 | | Axis -0.01204980 0.00826560 0.99989324 |
| 19479 | | Axis point 184.73930075 138.70193089 0.00000000 |
| 19480 | | Rotation angle (degrees) 122.45998234 |
| 19481 | | Shift along axis -113.07681168 |
| 19482 | | |
| 19483 | | |
| 19484 | | > ui mousemode right "rotate selected models" |
| 19485 | | |
| 19486 | | > view matrix models |
| 19487 | | > #24,-0.091446,-0.64225,-0.76102,499.15,0.83912,-0.4612,0.28839,184.6,-0.5362,-0.61222,0.5811,371.4,#26,0.29764,-0.92536,-0.23479,136.29,0.84203,0.13856,0.52133,267.81,-0.44988,-0.35287,0.82042,263.3,#27,0.76269,-0.38521,-0.51953,171.19,-0.236,-0.91365,0.33098,299.97,-0.60217,-0.12982,-0.78774,285.95,#28,-0.11348,0.98866,-0.098307,222.97,0.6538,0.14881,0.74189,249.88,0.74811,0.019914,-0.66328,284.32,#29,0.19762,0.24301,0.94968,183.23,-0.4186,-0.8551,0.30591,361.76,0.88641,-0.45799,-0.067257,249.31,#30,0.77476,0.61502,-0.14663,186.4,-0.41484,0.31947,-0.85197,329.69,-0.47713,0.7209,0.50265,300.33,#31,0.24509,0.12242,-0.96174,80.201,0.72418,0.63643,0.26556,194.17,0.64459,-0.76156,0.067324,631.07,#32,0.11865,0.8929,-0.43434,100.5,-0.037833,-0.43305,-0.90058,316.56,-0.99221,0.12329,-0.017602,229.06,#33,-0.45734,-0.25446,0.85211,156.93,0.5784,-0.81294,0.067679,329.57,0.67549,0.52382,0.51897,226.78,#34,0.15493,0.98647,0.053551,185.66,0.95829,-0.16324,0.2346,298.38,0.24017,0.01497,-0.97062,233.63,#35,-0.49178,-0.32547,0.8076,157.36,-0.77289,-0.26396,-0.57703,328.27,0.40098,-0.90796,-0.12174,226.36 |
| 19488 | | |
| 19489 | | > view matrix models |
| 19490 | | > #24,-0.09818,-0.66023,-0.74461,500.6,0.82524,-0.47218,0.30986,185.16,-0.55618,-0.58407,0.59121,368.1,#26,0.29289,-0.93256,-0.21106,135.87,0.82733,0.13652,0.54487,268.37,-0.47931,-0.3342,0.81152,266.53,#27,0.74617,-0.39496,-0.53595,171.54,-0.25807,-0.91367,0.31402,300.84,-0.61371,-0.096,-0.78368,287.46,#28,-0.090553,0.98993,-0.10883,222.89,0.67439,0.14136,0.72471,250.31,0.7328,-0.0077665,-0.6804,285.94,#29,0.21588,0.22557,0.95001,183.14,-0.3964,-0.86892,0.29639,361.53,0.89234,-0.44057,-0.098163,248.9,#30,0.75993,0.63459,-0.14072,187.31,-0.4336,0.33363,-0.83707,330.81,-0.48424,0.69713,0.52869,300.67,#31,0.26592,0.10868,-0.95785,88.133,0.73911,0.61491,0.27496,205.01,0.61887,-0.78107,0.083185,637.38,#32,0.094374,0.8924,-0.44127,99.617,-0.065209,-0.43675,-0.89722,316.48,-0.9934,0.11345,0.016975,231.86,#33,-0.43662,-0.24772,0.86487,156.07,0.59985,-0.79663,0.074651,328.97,0.67049,0.55138,0.49641,227.88,#34,0.16775,0.98532,0.031821,184.73,0.96307,-0.17069,0.20822,297.74,0.21059,-0.0042819,-0.97756,234.88,#35,-0.48764,-0.34924,0.80015,156.48,-0.75797,-0.28544,-0.58652,327.65,0.43324,-0.8925,-0.12552,227.48 |
| 19491 | | |
| 19492 | | > fitmap #24 inMap #25 |
| 19493 | | |
| 19494 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339 |
| 19495 | | points |
| 19496 | | correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 |
| 19497 | | steps = 84, shift = 6.48, angle = 5.9 degrees |
| 19498 | | |
| 19499 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 19500 | | (#25) coordinates: |
| 19501 | | Matrix rotation and translation |
| 19502 | | -0.53645385 -0.84385081 -0.01153598 402.23915451 |
| 19503 | | 0.84354606 -0.53657201 0.02281500 56.39401907 |
| 19504 | | -0.02544234 0.00250807 0.99967314 -108.72739308 |
| 19505 | | Axis -0.01203319 0.00824044 0.99989364 |
| 19506 | | Axis point 184.72484270 138.71777738 0.00000000 |
| 19507 | | Rotation angle (degrees) 122.45766945 |
| 19508 | | Shift along axis -113.09133960 |
| 19509 | | |
| 19510 | | |
| 19511 | | > fitmap #24 inMap #25 |
| 19512 | | |
| 19513 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339 |
| 19514 | | points |
| 19515 | | correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 |
| 19516 | | steps = 84, shift = 6.48, angle = 5.9 degrees |
| 19517 | | |
| 19518 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 19519 | | (#25) coordinates: |
| 19520 | | Matrix rotation and translation |
| 19521 | | -0.53645385 -0.84385081 -0.01153598 402.23915451 |
| 19522 | | 0.84354606 -0.53657201 0.02281500 56.39401907 |
| 19523 | | -0.02544234 0.00250807 0.99967314 -108.72739308 |
| 19524 | | Axis -0.01203319 0.00824044 0.99989364 |
| 19525 | | Axis point 184.72484270 138.71777738 0.00000000 |
| 19526 | | Rotation angle (degrees) 122.45766945 |
| 19527 | | Shift along axis -113.09133960 |
| 19528 | | |
| 19529 | | |
| 19530 | | > view matrix models |
| 19531 | | > #24,-0.11173,-0.63008,-0.76845,502.97,0.82758,-0.48708,0.27904,194.41,-0.55011,-0.60478,0.57586,374.23,#26,0.27709,-0.92819,-0.24837,138.26,0.84157,0.1097,0.52889,266.8,-0.46367,-0.35557,0.81153,264.6,#27,0.76885,-0.36234,-0.52687,172.33,-0.22698,-0.92495,0.30487,300.19,-0.59779,-0.11481,-0.79339,286.72,#28,-0.13032,0.98466,-0.11607,225.34,0.66312,0.17359,0.72811,251.38,0.73708,0.01792,-0.67556,285.95,#29,0.20713,0.26454,0.94187,182.87,-0.3988,-0.85629,0.32821,361.63,0.89334,-0.4436,-0.071869,249.07,#30,0.78523,0.60626,-0.12592,186.8,-0.40337,0.34654,-0.84688,330.51,-0.46979,0.71579,0.51666,300.61,#31,0.22649,0.1073,-0.96809,83.686,0.74063,0.62654,0.24272,197.91,0.63259,-0.77197,0.062434,633.51,#32,0.12045,0.90325,-0.41187,101.3,-0.051345,-0.40867,-0.91124,314.07,-0.99139,0.1309,-0.0028462,229.53,#33,-0.47214,-0.2347,0.8497,157.4,0.57802,-0.81019,0.09739,328.44,0.66556,0.53713,0.51819,227.06,#34,0.13092,0.9902,0.048593,186.89,0.96569,-0.13846,0.21971,298.08,0.22429,0.018161,-0.97435,234.44,#35,-0.47284,-0.31802,0.82176,157.86,-0.77808,-0.28698,-0.55877,327.14,0.41353,-0.90361,-0.11175,226.66 |
| 19532 | | |
| 19533 | | > view matrix models |
| 19534 | | > #24,-0.10334,-0.67936,-0.7265,501.55,0.82094,-0.47065,0.32334,182.85,-0.56159,-0.56299,0.60635,361.79,#26,0.28951,-0.93908,-0.18524,135.29,0.8196,0.14325,0.55474,268.96,-0.49441,-0.31242,0.81114,268.44,#27,0.72803,-0.40668,-0.55189,171.81,-0.27178,-0.91029,0.31226,301.25,-0.62937,-0.077342,-0.77324,288.17,#28,-0.065378,0.99085,-0.1181,222.58,0.68223,0.13076,0.71935,250.17,0.72821,-0.03354,-0.68453,285.88,#29,0.23377,0.20556,0.95032,183.08,-0.3902,-0.8754,0.28534,361.44,0.89056,-0.43752,-0.12443,248.75,#30,0.74317,0.65508,-0.13628,188.22,-0.44622,0.33345,-0.83048,331.18,-0.49859,0.678,0.54012,300.7,#31,0.28881,0.095699,-0.95259,96.099,0.74207,0.6063,0.2859,209.63,0.60491,-0.78946,0.10409,640.95,#32,0.069075,0.89035,-0.45001,98.699,-0.075612,-0.44511,-0.89228,317.12,-0.99474,0.09566,0.036575,234.21,#33,-0.41363,-0.24226,0.87762,155.17,0.61077,-0.78869,0.070156,328.98,0.67518,0.56505,0.47419,228.72,#34,0.1829,0.98308,0.0097771,183.66,0.96319,-0.18118,0.1986,297.51,0.19701,-0.026908,-0.98003,235.31,#35,-0.48462,-0.37417,0.79066,155.55,-0.74861,-0.29015,-0.59615,327.65,0.45248,-0.8808,-0.13949,228.33 |
| 19535 | | |
| 19536 | | > ui mousemode right "translate selected models" |
| 19537 | | |
| 19538 | | > view matrix models |
| 19539 | | > #24,-0.10334,-0.67936,-0.7265,500.14,0.82094,-0.47065,0.32334,184.27,-0.56159,-0.56299,0.60635,360.94,#26,0.28951,-0.93908,-0.18524,133.88,0.8196,0.14325,0.55474,270.39,-0.49441,-0.31242,0.81114,267.59,#27,0.72803,-0.40668,-0.55189,170.4,-0.27178,-0.91029,0.31226,302.68,-0.62937,-0.077342,-0.77324,287.32,#28,-0.065378,0.99085,-0.1181,221.17,0.68223,0.13076,0.71935,251.59,0.72821,-0.03354,-0.68453,285.02,#29,0.23377,0.20556,0.95032,181.67,-0.3902,-0.8754,0.28534,362.87,0.89056,-0.43752,-0.12443,247.9,#30,0.74317,0.65508,-0.13628,186.81,-0.44622,0.33345,-0.83048,332.6,-0.49859,0.678,0.54012,299.84,#31,0.28881,0.095699,-0.95259,94.688,0.74207,0.6063,0.2859,211.06,0.60491,-0.78946,0.10409,640.1,#32,0.069075,0.89035,-0.45001,97.288,-0.075612,-0.44511,-0.89228,318.55,-0.99474,0.09566,0.036575,233.35,#33,-0.41363,-0.24226,0.87762,153.76,0.61077,-0.78869,0.070156,330.4,0.67518,0.56505,0.47419,227.87,#34,0.1829,0.98308,0.0097771,182.25,0.96319,-0.18118,0.1986,298.93,0.19701,-0.026908,-0.98003,234.46,#35,-0.48462,-0.37417,0.79066,154.14,-0.74861,-0.29015,-0.59615,329.07,0.45248,-0.8808,-0.13949,227.47 |
| 19540 | | |
| 19541 | | > fitmap #24 inMap #25 |
| 19542 | | |
| 19543 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339 |
| 19544 | | points |
| 19545 | | correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 |
| 19546 | | steps = 92, shift = 4.58, angle = 6.41 degrees |
| 19547 | | |
| 19548 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 19549 | | (#25) coordinates: |
| 19550 | | Matrix rotation and translation |
| 19551 | | -0.53650463 -0.84381837 -0.01154683 402.25242935 |
| 19552 | | 0.84351198 -0.53662289 0.02287816 56.37440069 |
| 19553 | | -0.02550131 0.00253435 0.99967157 -108.70723273 |
| 19554 | | Axis -0.01205551 0.00826927 0.99989314 |
| 19555 | | Axis point 184.73604051 138.70452221 0.00000000 |
| 19556 | | Rotation angle (degrees) 122.46117420 |
| 19557 | | Shift along axis -113.07880045 |
| 19558 | | |
| 19559 | | |
| 19560 | | > fitmap #24 inMap #25 |
| 19561 | | |
| 19562 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339 |
| 19563 | | points |
| 19564 | | correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 |
| 19565 | | steps = 92, shift = 4.58, angle = 6.41 degrees |
| 19566 | | |
| 19567 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 19568 | | (#25) coordinates: |
| 19569 | | Matrix rotation and translation |
| 19570 | | -0.53650463 -0.84381837 -0.01154683 402.25242935 |
| 19571 | | 0.84351198 -0.53662289 0.02287816 56.37440069 |
| 19572 | | -0.02550131 0.00253435 0.99967157 -108.70723273 |
| 19573 | | Axis -0.01205551 0.00826927 0.99989314 |
| 19574 | | Axis point 184.73604051 138.70452221 0.00000000 |
| 19575 | | Rotation angle (degrees) 122.46117420 |
| 19576 | | Shift along axis -113.07880045 |
| 19577 | | |
| 19578 | | |
| 19579 | | > fitmap #24 inMap #25 |
| 19580 | | |
| 19581 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339 |
| 19582 | | points |
| 19583 | | correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 |
| 19584 | | steps = 92, shift = 4.58, angle = 6.41 degrees |
| 19585 | | |
| 19586 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 19587 | | (#25) coordinates: |
| 19588 | | Matrix rotation and translation |
| 19589 | | -0.53650463 -0.84381837 -0.01154683 402.25242935 |
| 19590 | | 0.84351198 -0.53662289 0.02287816 56.37440069 |
| 19591 | | -0.02550131 0.00253435 0.99967157 -108.70723273 |
| 19592 | | Axis -0.01205551 0.00826927 0.99989314 |
| 19593 | | Axis point 184.73604051 138.70452221 0.00000000 |
| 19594 | | Rotation angle (degrees) 122.46117420 |
| 19595 | | Shift along axis -113.07880045 |
| 19596 | | |
| 19597 | | |
| 19598 | | > select subtract #35 |
| 19599 | | |
| 19600 | | 39361 atoms, 40096 bonds, 1 pseudobond, 4960 residues, 12 models selected |
| 19601 | | |
| 19602 | | > select subtract #34 |
| 19603 | | |
| 19604 | | 36994 atoms, 37698 bonds, 1 pseudobond, 4662 residues, 11 models selected |
| 19605 | | |
| 19606 | | > select subtract #33 |
| 19607 | | |
| 19608 | | 35574 atoms, 36257 bonds, 1 pseudobond, 4485 residues, 10 models selected |
| 19609 | | |
| 19610 | | > select subtract #32 |
| 19611 | | |
| 19612 | | 28901 atoms, 29471 bonds, 3632 residues, 8 models selected |
| 19613 | | |
| 19614 | | > select subtract #31 |
| 19615 | | |
| 19616 | | 27439 atoms, 27990 bonds, 3453 residues, 7 models selected |
| 19617 | | |
| 19618 | | > select subtract #30 |
| 19619 | | |
| 19620 | | 20225 atoms, 20617 bonds, 2548 residues, 6 models selected |
| 19621 | | |
| 19622 | | > select subtract #29 |
| 19623 | | |
| 19624 | | 18768 atoms, 19134 bonds, 2367 residues, 5 models selected |
| 19625 | | |
| 19626 | | > select subtract #28 |
| 19627 | | |
| 19628 | | 17311 atoms, 17651 bonds, 2186 residues, 4 models selected |
| 19629 | | |
| 19630 | | > select subtract #27 |
| 19631 | | |
| 19632 | | 9810 atoms, 10032 bonds, 1233 residues, 3 models selected |
| 19633 | | |
| 19634 | | > select subtract #26 |
| 19635 | | |
| 19636 | | 2 models selected |
| 19637 | | |
| 19638 | | > hide #!25 models |
| 19639 | | |
| 19640 | | > select subtract #24 |
| 19641 | | |
| 19642 | | Nothing selected |
| 19643 | | |
| 19644 | | > show #26 models |
| 19645 | | |
| 19646 | | > fitmap #26 inMap #24 |
| 19647 | | |
| 19648 | | Fit molecule copy of CopA_F8WHL2.pdb (#26) to map postprocess_20231221.mrc |
| 19649 | | (#24) using 9810 atoms |
| 19650 | | average map value = 0.001845, steps = 116 |
| 19651 | | shifted from previous position = 16.4 |
| 19652 | | rotated from previous position = 4.06 degrees |
| 19653 | | atoms outside contour = 7851, contour level = 0.0032978 |
| 19654 | | |
| 19655 | | Position of copy of CopA_F8WHL2.pdb (#26) relative to postprocess_20231221.mrc |
| 19656 | | (#24) coordinates: |
| 19657 | | Matrix rotation and translation |
| 19658 | | 0.89996653 0.40445765 0.16270906 162.22736905 |
| 19659 | | -0.20995376 0.72918744 -0.65131028 244.63095239 |
| 19660 | | -0.38207283 0.55199608 0.74116170 239.12828538 |
| 19661 | | Axis 0.82599894 0.37396068 -0.42175724 |
| 19662 | | Axis point 0.00000000 -322.90335119 438.30306870 |
| 19663 | | Rotation angle (degrees) 46.75197840 |
| 19664 | | Shift along axis 124.62790578 |
| 19665 | | |
| 19666 | | |
| 19667 | | > hide #26 models |
| 19668 | | |
| 19669 | | > show #27 models |
| 19670 | | |
| 19671 | | > fitmap #27 inMap #24 |
| 19672 | | |
| 19673 | | Fit molecule copy of CopB_Q9JIF7.pdb (#27) to map postprocess_20231221.mrc |
| 19674 | | (#24) using 7501 atoms |
| 19675 | | average map value = 0.002923, steps = 132 |
| 19676 | | shifted from previous position = 5.04 |
| 19677 | | rotated from previous position = 5.54 degrees |
| 19678 | | atoms outside contour = 5216, contour level = 0.0032978 |
| 19679 | | |
| 19680 | | Position of copy of CopB_Q9JIF7.pdb (#27) relative to postprocess_20231221.mrc |
| 19681 | | (#24) coordinates: |
| 19682 | | Matrix rotation and translation |
| 19683 | | -0.04204995 -0.73306615 0.67885625 172.36139873 |
| 19684 | | -0.03865825 0.68014219 0.73206020 204.57555030 |
| 19685 | | -0.99836734 0.00453970 -0.05693900 236.22075458 |
| 19686 | | Axis -0.37200954 0.85762968 0.35507778 |
| 19687 | | Axis point 209.22295306 0.00000000 -39.71296119 |
| 19688 | | Rotation angle (degrees) 102.08856313 |
| 19689 | | Shift along axis 195.20672158 |
| 19690 | | |
| 19691 | | |
| 19692 | | > select add #27 |
| 19693 | | |
| 19694 | | 7501 atoms, 7619 bonds, 953 residues, 1 model selected |
| 19695 | | |
| 19696 | | > view matrix models |
| 19697 | | > #27,0.77002,-0.33054,-0.54573,169.9,-0.2377,-0.94238,0.23541,304.33,-0.59209,-0.051551,-0.80422,284.85 |
| 19698 | | |
| 19699 | | > fitmap #27 inMap #24 |
| 19700 | | |
| 19701 | | Fit molecule copy of CopB_Q9JIF7.pdb (#27) to map postprocess_20231221.mrc |
| 19702 | | (#24) using 7501 atoms |
| 19703 | | average map value = 0.002923, steps = 76 |
| 19704 | | shifted from previous position = 4.69 |
| 19705 | | rotated from previous position = 0.0487 degrees |
| 19706 | | atoms outside contour = 5211, contour level = 0.0032978 |
| 19707 | | |
| 19708 | | Position of copy of CopB_Q9JIF7.pdb (#27) relative to postprocess_20231221.mrc |
| 19709 | | (#24) coordinates: |
| 19710 | | Matrix rotation and translation |
| 19711 | | -0.04153062 -0.73285289 0.67911843 172.37785500 |
| 19712 | | -0.03806305 0.68037194 0.73187788 204.57714323 |
| 19713 | | -0.99841194 0.00454602 -0.05615089 236.24348469 |
| 19714 | | Axis -0.37185060 0.85764245 0.35521340 |
| 19715 | | Axis point 209.26127593 0.00000000 -39.81318725 |
| 19716 | | Rotation angle (degrees) 102.04353100 |
| 19717 | | Shift along axis 195.27208462 |
| 19718 | | |
| 19719 | | |
| 19720 | | > view matrix models |
| 19721 | | > #27,0.76958,-0.33073,-0.54623,170.89,-0.23753,-0.9423,0.23589,303.26,-0.59273,-0.051788,-0.80373,284.04 |
| 19722 | | |
| 19723 | | > ui mousemode right "rotate selected models" |
| 19724 | | |
| 19725 | | > view matrix models |
| 19726 | | > #27,0.7306,-0.42488,-0.53451,171.25,-0.27862,-0.90018,0.33472,302.78,-0.62337,-0.095623,-0.77606,284.13 |
| 19727 | | |
| 19728 | | > view matrix models |
| 19729 | | > #27,0.76175,-0.3737,-0.52923,170.94,-0.17385,-0.90482,0.38868,301.97,-0.62411,-0.20407,-0.75422,284.28 |
| 19730 | | |
| 19731 | | > fitmap #27 inMap #24 |
| 19732 | | |
| 19733 | | Fit molecule copy of CopB_Q9JIF7.pdb (#27) to map postprocess_20231221.mrc |
| 19734 | | (#24) using 7501 atoms |
| 19735 | | average map value = 0.002633, steps = 44 |
| 19736 | | shifted from previous position = 3.61 |
| 19737 | | rotated from previous position = 3.9 degrees |
| 19738 | | atoms outside contour = 5376, contour level = 0.0032978 |
| 19739 | | |
| 19740 | | Position of copy of CopB_Q9JIF7.pdb (#27) relative to postprocess_20231221.mrc |
| 19741 | | (#24) coordinates: |
| 19742 | | Matrix rotation and translation |
| 19743 | | 0.05431385 -0.66256715 0.74703064 172.62333642 |
| 19744 | | -0.01180746 0.74765647 0.66398071 209.75331516 |
| 19745 | | -0.99845410 -0.04488388 0.03278487 233.19327392 |
| 19746 | | Axis -0.35564828 0.87573658 0.32649616 |
| 19747 | | Axis point 217.41288898 0.00000000 -50.32061187 |
| 19748 | | Rotation angle (degrees) 94.73931746 |
| 19749 | | Shift along axis 198.43216601 |
| 19750 | | |
| 19751 | | |
| 19752 | | > view matrix models |
| 19753 | | > #27,0.79432,-0.34789,-0.49803,172.17,-0.172,-0.91504,0.36487,302.85,-0.58265,-0.20416,-0.78666,281.24 |
| 19754 | | |
| 19755 | | > ui mousemode right "translate selected models" |
| 19756 | | |
| 19757 | | > view matrix models |
| 19758 | | > #27,0.79432,-0.34789,-0.49803,175.55,-0.172,-0.91504,0.36487,308.21,-0.58265,-0.20416,-0.78666,283.6 |
| 19759 | | |
| 19760 | | > fitmap #27 inMap #24 |
| 19761 | | |
| 19762 | | Fit molecule copy of CopB_Q9JIF7.pdb (#27) to map postprocess_20231221.mrc |
| 19763 | | (#24) using 7501 atoms |
| 19764 | | average map value = 0.002923, steps = 112 |
| 19765 | | shifted from previous position = 4.6 |
| 19766 | | rotated from previous position = 8.94 degrees |
| 19767 | | atoms outside contour = 5214, contour level = 0.0032978 |
| 19768 | | |
| 19769 | | Position of copy of CopB_Q9JIF7.pdb (#27) relative to postprocess_20231221.mrc |
| 19770 | | (#24) coordinates: |
| 19771 | | Matrix rotation and translation |
| 19772 | | -0.04165939 -0.73303937 0.67890925 172.36144600 |
| 19773 | | -0.03865688 0.68017292 0.73203172 204.56515197 |
| 19774 | | -0.99838376 0.00425148 -0.05667260 236.23504293 |
| 19775 | | Axis -0.37211436 0.85760065 0.35503807 |
| 19776 | | Axis point 209.28231383 0.00000000 -39.74893852 |
| 19777 | | Rotation angle (degrees) 102.06841613 |
| 19778 | | Shift along axis 195.16947240 |
| 19779 | | |
| 19780 | | |
| 19781 | | > select subtract #27 |
| 19782 | | |
| 19783 | | Nothing selected |
| 19784 | | |
| 19785 | | > hide #27 models |
| 19786 | | |
| 19787 | | > show #28 models |
| 19788 | | |
| 19789 | | > fitmap #28 inMap #24 |
| 19790 | | |
| 19791 | | Fit molecule copy of hArf1_P84078 (#28) to map postprocess_20231221.mrc (#24) |
| 19792 | | using 1457 atoms |
| 19793 | | average map value = 0.002588, steps = 88 |
| 19794 | | shifted from previous position = 12.8 |
| 19795 | | rotated from previous position = 6.38 degrees |
| 19796 | | atoms outside contour = 1281, contour level = 0.0032978 |
| 19797 | | |
| 19798 | | Position of copy of hArf1_P84078 (#28) relative to postprocess_20231221.mrc |
| 19799 | | (#24) coordinates: |
| 19800 | | Matrix rotation and translation |
| 19801 | | 0.15847948 0.02339073 0.98708516 126.69876215 |
| 19802 | | -0.68653702 -0.71588385 0.12718971 200.56846102 |
| 19803 | | 0.70961339 -0.69782747 -0.09739430 178.43391214 |
| 19804 | | Axis -0.73450547 0.24703066 -0.63204237 |
| 19805 | | Axis point 0.00000000 138.25364345 -15.33318730 |
| 19806 | | Rotation angle (degrees) 145.83250639 |
| 19807 | | Shift along axis -156.29216940 |
| 19808 | | |
| 19809 | | |
| 19810 | | > hide #28 models |
| 19811 | | |
| 19812 | | > show #29 models |
| 19813 | | |
| 19814 | | > fitmap #29 inMap #24 |
| 19815 | | |
| 19816 | | Fit molecule copy of hArf1_P84078 (#29) to map postprocess_20231221.mrc (#24) |
| 19817 | | using 1457 atoms |
| 19818 | | average map value = 0.003766, steps = 60 |
| 19819 | | shifted from previous position = 5.01 |
| 19820 | | rotated from previous position = 6.4 degrees |
| 19821 | | atoms outside contour = 617, contour level = 0.0032978 |
| 19822 | | |
| 19823 | | Position of copy of hArf1_P84078 (#29) relative to postprocess_20231221.mrc |
| 19824 | | (#24) coordinates: |
| 19825 | | Matrix rotation and translation |
| 19826 | | -0.84456626 -0.49420934 0.20607023 243.01078108 |
| 19827 | | -0.47688761 0.51925293 -0.70919291 195.93798301 |
| 19828 | | 0.24348719 -0.69723275 -0.67422582 220.56872240 |
| 19829 | | Axis 0.27858679 -0.87154962 0.40347325 |
| 19830 | | Axis point 151.42747314 0.00000000 157.15853491 |
| 19831 | | Rotation angle (degrees) 178.77000789 |
| 19832 | | Shift along axis -14.07649955 |
| 19833 | | |
| 19834 | | |
| 19835 | | > hide #29 models |
| 19836 | | |
| 19837 | | > show #30 models |
| 19838 | | |
| 19839 | | > fitmap #30 inMap #24 |
| 19840 | | |
| 19841 | | Fit molecule copy of CopBprime_O55029.pdb (#30) to map |
| 19842 | | postprocess_20231221.mrc (#24) using 7214 atoms |
| 19843 | | average map value = 0.00312, steps = 80 |
| 19844 | | shifted from previous position = 4.34 |
| 19845 | | rotated from previous position = 6.44 degrees |
| 19846 | | atoms outside contour = 3972, contour level = 0.0032978 |
| 19847 | | |
| 19848 | | Position of copy of CopBprime_O55029.pdb (#30) relative to |
| 19849 | | postprocess_20231221.mrc (#24) coordinates: |
| 19850 | | Matrix rotation and translation |
| 19851 | | -0.16261321 -0.17515584 -0.97101873 188.51477883 |
| 19852 | | -0.01403262 -0.98360736 0.17977662 177.40448822 |
| 19853 | | -0.98659010 0.04285999 0.15748965 238.56224194 |
| 19854 | | Axis -0.64579491 0.07344552 0.75997019 |
| 19855 | | Axis point 189.60066445 85.40633709 0.00000000 |
| 19856 | | Rotation angle (degrees) 173.91485430 |
| 19857 | | Shift along axis 72.58787161 |
| 19858 | | |
| 19859 | | |
| 19860 | | > hide #30 models |
| 19861 | | |
| 19862 | | > show #31 models |
| 19863 | | |
| 19864 | | > fitmap #31 inMap #24 |
| 19865 | | |
| 19866 | | Fit molecule copy of CopD_Q5XJY5 (#31) to map postprocess_20231221.mrc (#24) |
| 19867 | | using 1462 atoms |
| 19868 | | average map value = 0.003203, steps = 324 |
| 19869 | | shifted from previous position = 5.13 |
| 19870 | | rotated from previous position = 24.8 degrees |
| 19871 | | atoms outside contour = 880, contour level = 0.0032978 |
| 19872 | | |
| 19873 | | Position of copy of CopD_Q5XJY5 (#31) relative to postprocess_20231221.mrc |
| 19874 | | (#24) coordinates: |
| 19875 | | Matrix rotation and translation |
| 19876 | | -0.03835878 0.89491137 0.44459224 -96.27105677 |
| 19877 | | -0.99475022 -0.07643914 0.06803729 102.74398933 |
| 19878 | | 0.09487159 -0.43964840 0.89314538 477.54730683 |
| 19879 | | Axis -0.25541626 0.17594418 -0.95068722 |
| 19880 | | Axis point -29.88566959 190.29797301 0.00000000 |
| 19881 | | Rotation angle (degrees) 96.36294863 |
| 19882 | | Shift along axis -411.33171958 |
| 19883 | | |
| 19884 | | |
| 19885 | | > hide #31 models |
| 19886 | | |
| 19887 | | > show #!32 models |
| 19888 | | |
| 19889 | | > fitmap #32 inMap #24 |
| 19890 | | |
| 19891 | | Fit molecule copy of CopG_Q9QZE5 (#32) to map postprocess_20231221.mrc (#24) |
| 19892 | | using 6673 atoms |
| 19893 | | average map value = 0.003524, steps = 72 |
| 19894 | | shifted from previous position = 3.77 |
| 19895 | | rotated from previous position = 6.37 degrees |
| 19896 | | atoms outside contour = 4307, contour level = 0.0032978 |
| 19897 | | |
| 19898 | | Position of copy of CopG_Q9QZE5 (#32) relative to postprocess_20231221.mrc |
| 19899 | | (#24) coordinates: |
| 19900 | | Matrix rotation and translation |
| 19901 | | 0.48899567 -0.51150146 -0.70657589 223.56207168 |
| 19902 | | 0.54905607 -0.44893907 0.70497599 282.28594871 |
| 19903 | | -0.67780577 -0.73267999 0.06131372 258.73118766 |
| 19904 | | Axis -0.80462203 -0.01610195 0.59356896 |
| 19905 | | Axis point 0.00000000 245.02634740 103.88878785 |
| 19906 | | Rotation angle (degrees) 116.69973303 |
| 19907 | | Shift along axis -30.85352207 |
| 19908 | | |
| 19909 | | |
| 19910 | | > hide #!32 models |
| 19911 | | |
| 19912 | | > show #33 models |
| 19913 | | |
| 19914 | | > fitmap #33 inMap #24 |
| 19915 | | |
| 19916 | | Fit molecule copy of CopZ1_P61924.pdb (#33) to map postprocess_20231221.mrc |
| 19917 | | (#24) using 1420 atoms |
| 19918 | | average map value = 0.003933, steps = 76 |
| 19919 | | shifted from previous position = 5.94 |
| 19920 | | rotated from previous position = 6.42 degrees |
| 19921 | | atoms outside contour = 669, contour level = 0.0032978 |
| 19922 | | |
| 19923 | | Position of copy of CopZ1_P61924.pdb (#33) relative to |
| 19924 | | postprocess_20231221.mrc (#24) coordinates: |
| 19925 | | Matrix rotation and translation |
| 19926 | | 0.16475049 -0.94009197 -0.29847006 230.52229673 |
| 19927 | | -0.38691226 0.21675387 -0.89627935 241.47790202 |
| 19928 | | 0.90727955 0.26314418 -0.32802281 218.17037219 |
| 19929 | | Axis 0.65807298 -0.68436703 0.31397725 |
| 19930 | | Axis point 143.58778508 -0.00000000 249.38897644 |
| 19931 | | Rotation angle (degrees) 118.24606873 |
| 19932 | | Shift along axis 54.94151398 |
| 19933 | | |
| 19934 | | |
| 19935 | | > hide #33 models |
| 19936 | | |
| 19937 | | > show #34 models |
| 19938 | | |
| 19939 | | > fitmap #34 inMap #24 |
| 19940 | | |
| 19941 | | Fit molecule copy of Golph3_ Q9CRA5.pdb (#34) to map postprocess_20231221.mrc |
| 19942 | | (#24) using 2367 atoms |
| 19943 | | average map value = 0.0031, steps = 88 |
| 19944 | | shifted from previous position = 9.02 |
| 19945 | | rotated from previous position = 6.41 degrees |
| 19946 | | atoms outside contour = 1383, contour level = 0.0032978 |
| 19947 | | |
| 19948 | | Position of copy of Golph3_ Q9CRA5.pdb (#34) relative to |
| 19949 | | postprocess_20231221.mrc (#24) coordinates: |
| 19950 | | Matrix rotation and translation |
| 19951 | | 0.66108762 -0.23544106 0.71241186 198.02227460 |
| 19952 | | -0.68860963 -0.56744408 0.45146871 233.20913977 |
| 19953 | | 0.29795962 -0.78903404 -0.53725724 191.32293326 |
| 19954 | | Axis -0.89619456 0.29941880 -0.32738920 |
| 19955 | | Axis point 0.00000000 180.08833448 -4.24101466 |
| 19956 | | Rotation angle (degrees) 136.20385961 |
| 19957 | | Shift along axis -170.27634703 |
| 19958 | | |
| 19959 | | |
| 19960 | | > hide #34 models |
| 19961 | | |
| 19962 | | > show #35 models |
| 19963 | | |
| 19964 | | > fitmap #35 inMap #24 |
| 19965 | | |
| 19966 | | Fit molecule copy of CopZ2_Q9CTG7.pdb (#35) to map postprocess_20231221.mrc |
| 19967 | | (#24) using 1463 atoms |
| 19968 | | average map value = 0.003943, steps = 76 |
| 19969 | | shifted from previous position = 6.08 |
| 19970 | | rotated from previous position = 6.44 degrees |
| 19971 | | atoms outside contour = 720, contour level = 0.0032978 |
| 19972 | | |
| 19973 | | Position of copy of CopZ2_Q9CTG7.pdb (#35) relative to |
| 19974 | | postprocess_20231221.mrc (#24) coordinates: |
| 19975 | | Matrix rotation and translation |
| 19976 | | -0.81885698 0.29532139 -0.49219768 229.57861768 |
| 19977 | | 0.42661204 0.88681622 -0.17764905 242.04930135 |
| 19978 | | 0.38402532 -0.35544661 -0.85216330 217.25627407 |
| 19979 | | Axis -0.19675097 -0.96962927 0.14528637 |
| 19980 | | Axis point 59.03656762 0.00000000 149.01652041 |
| 19981 | | Rotation angle (degrees) 153.13858612 |
| 19982 | | Shift along axis -248.30352928 |
| 19983 | | |
| 19984 | | |
| 19985 | | > hide #35 models |
| 19986 | | |
| 19987 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 19988 | | > dataset/Chimera sessions/20240125_linkage_2_fitting.cxs" |
| 19989 | | |
| 19990 | | > hide #!24 models |
| 19991 | | |
| 19992 | | > show #!24 models |
| 19993 | | |
| 19994 | | > show #!16 models |
| 19995 | | |
| 19996 | | > show #!17 models |
| 19997 | | |
| 19998 | | > hide #!17 models |
| 19999 | | |
| 20000 | | > show #!25 models |
| 20001 | | |
| 20002 | | > hide #!25 models |
| 20003 | | |
| 20004 | | > show #!25 models |
| 20005 | | |
| 20006 | | > hide #!24 models |
| 20007 | | |
| 20008 | | > show #!37 models |
| 20009 | | |
| 20010 | | > show #!2 models |
| 20011 | | |
| 20012 | | > hide #!2 models |
| 20013 | | |
| 20014 | | > hide #!16 models |
| 20015 | | |
| 20016 | | > hide #!25 models |
| 20017 | | |
| 20018 | | > show #!36 models |
| 20019 | | |
| 20020 | | > select add #36 |
| 20021 | | |
| 20022 | | 2 models selected |
| 20023 | | |
| 20024 | | > select add #38 |
| 20025 | | |
| 20026 | | 9810 atoms, 10032 bonds, 1233 residues, 3 models selected |
| 20027 | | |
| 20028 | | > select add #39 |
| 20029 | | |
| 20030 | | 17311 atoms, 17651 bonds, 2186 residues, 4 models selected |
| 20031 | | |
| 20032 | | > select add #40 |
| 20033 | | |
| 20034 | | 18768 atoms, 19134 bonds, 2367 residues, 5 models selected |
| 20035 | | |
| 20036 | | > select add #41 |
| 20037 | | |
| 20038 | | 20225 atoms, 20617 bonds, 2548 residues, 6 models selected |
| 20039 | | |
| 20040 | | > select add #42 |
| 20041 | | |
| 20042 | | 27439 atoms, 27990 bonds, 3453 residues, 7 models selected |
| 20043 | | |
| 20044 | | > select add #43 |
| 20045 | | |
| 20046 | | 28901 atoms, 29471 bonds, 3632 residues, 8 models selected |
| 20047 | | |
| 20048 | | > select add #44 |
| 20049 | | |
| 20050 | | 35574 atoms, 36257 bonds, 1 pseudobond, 4485 residues, 10 models selected |
| 20051 | | |
| 20052 | | > select add #45 |
| 20053 | | |
| 20054 | | 36994 atoms, 37698 bonds, 1 pseudobond, 4662 residues, 11 models selected |
| 20055 | | |
| 20056 | | > select add #46 |
| 20057 | | |
| 20058 | | 39361 atoms, 40096 bonds, 1 pseudobond, 4960 residues, 12 models selected |
| 20059 | | |
| 20060 | | > select add #47 |
| 20061 | | |
| 20062 | | 40824 atoms, 41582 bonds, 1 pseudobond, 5145 residues, 13 models selected |
| 20063 | | |
| 20064 | | > view matrix models |
| 20065 | | > #36,-0.30646,-0.94615,-0.10436,428.92,0.54097,-0.26333,0.79875,152.1,-0.78322,0.18832,0.59254,362.01,#38,-0.037217,-0.87154,0.48891,122.81,0.23648,0.46767,0.85168,366.41,-0.97092,0.14732,0.1887,422.69,#39,0.26132,-0.57917,-0.77219,164.06,-0.69745,-0.66634,0.26375,372.92,-0.66729,0.46964,-0.57807,404.78,#40,0.52778,0.74255,-0.41239,181.69,0.83267,-0.3565,0.42374,310.33,0.16763,-0.56703,-0.80646,406.23,#41,0.68427,-0.26654,0.67877,146.04,-0.13657,-0.96118,-0.23976,408.14,0.71632,0.071359,-0.69411,339.27,#42,0.16647,0.97979,0.11088,178.42,-0.87213,0.19877,-0.44709,397.9,-0.46009,-0.022274,0.88759,389.11,#43,0.72317,-0.33836,-0.60212,308.31,0.68009,0.19682,0.70621,451.73,-0.12045,-0.9202,0.37245,734.45,#44,-0.59861,0.65798,-0.45687,66.328,-0.4217,-0.74376,-0.51864,405.38,-0.68106,-0.1178,0.72269,393.38,#45,0.54534,0.56794,-0.61648,107.45,-0.56926,0.79078,0.22495,385.74,0.61526,0.22826,0.75456,356.26,#46,0.41891,0.69144,-0.58858,127.57,0.77647,-0.60882,-0.16258,350.66,-0.47075,-0.38891,-0.79192,364.19,#47,-0.19261,-0.89222,0.40847,106.89,-0.2483,-0.35841,-0.89994,386.1,0.94934,-0.27476,-0.15251,356.52 |
| 20066 | | |
| 20067 | | > ui mousemode right "rotate selected models" |
| 20068 | | |
| 20069 | | > view matrix models |
| 20070 | | > #36,-0.68445,0.68576,-0.2475,239.5,-0.35539,-0.61024,-0.70803,758.89,-0.63658,-0.39665,0.66139,423.44,#38,-0.66512,0.086485,-0.74171,237.05,0.079164,-0.97951,-0.1852,382.68,-0.74252,-0.1819,0.64465,381.28,#39,0.068042,0.98166,-0.17808,205.84,0.786,-0.16268,-0.59644,414.74,-0.61447,-0.09939,-0.78265,389.23,#40,-0.75447,-0.33405,-0.56497,246.16,-0.13891,0.92256,-0.35997,465.14,0.64147,-0.19311,-0.74245,381.2,#41,0.19091,0.86663,-0.46098,152.95,0.41826,0.35303,0.83691,396.79,0.88804,-0.35259,-0.29508,336.91,#42,0.34544,-0.56524,0.74912,173.08,0.76513,0.63184,0.12393,414.75,-0.54337,0.53036,0.65074,390.84,#43,-0.87038,-0.48469,-0.086666,258.19,0.1745,-0.13907,-0.97479,392.9,0.46041,-0.86356,0.20562,753.21,#44,0.20986,0.22373,0.95179,216.02,-0.02883,0.97446,-0.22271,323.98,-0.97731,0.019296,0.21095,340.28,#45,0.5198,-0.70827,0.47766,194.48,0.5969,-0.098898,-0.7962,376.47,0.61116,0.69898,0.37135,324.95,#46,-0.99845,-0.031687,-0.045733,216.53,-0.024622,0.98875,-0.14753,410.68,0.049893,-0.14618,-0.988,331.4,#47,0.75776,0.49451,0.42575,194.58,-0.24129,-0.39387,0.88693,375.76,0.60629,-0.77481,-0.17914,324.99 |
| 20071 | | |
| 20072 | | > ui mousemode right "translate selected models" |
| 20073 | | |
| 20074 | | > view matrix models |
| 20075 | | > #36,-0.68445,0.68576,-0.2475,264.07,-0.35539,-0.61024,-0.70803,585.08,-0.63658,-0.39665,0.66139,317.76,#38,-0.66512,0.086485,-0.74171,261.62,0.079164,-0.97951,-0.1852,208.87,-0.74252,-0.1819,0.64465,275.59,#39,0.068042,0.98166,-0.17808,230.41,0.786,-0.16268,-0.59644,240.93,-0.61447,-0.09939,-0.78265,283.54,#40,-0.75447,-0.33405,-0.56497,270.73,-0.13891,0.92256,-0.35997,291.33,0.64147,-0.19311,-0.74245,275.51,#41,0.19091,0.86663,-0.46098,177.52,0.41826,0.35303,0.83691,222.98,0.88804,-0.35259,-0.29508,231.22,#42,0.34544,-0.56524,0.74912,197.65,0.76513,0.63184,0.12393,240.94,-0.54337,0.53036,0.65074,285.15,#43,-0.87038,-0.48469,-0.086666,282.76,0.1745,-0.13907,-0.97479,219.09,0.46041,-0.86356,0.20562,647.52,#44,0.20986,0.22373,0.95179,240.58,-0.02883,0.97446,-0.22271,150.17,-0.97731,0.019296,0.21095,234.6,#45,0.5198,-0.70827,0.47766,219.04,0.5969,-0.098898,-0.7962,202.67,0.61116,0.69898,0.37135,219.27,#46,-0.99845,-0.031687,-0.045733,241.1,-0.024622,0.98875,-0.14753,236.88,0.049893,-0.14618,-0.988,225.72,#47,0.75776,0.49451,0.42575,219.15,-0.24129,-0.39387,0.88693,201.96,0.60629,-0.77481,-0.17914,219.31 |
| 20076 | | |
| 20077 | | > view matrix models |
| 20078 | | > #36,-0.68445,0.68576,-0.2475,307.56,-0.35539,-0.61024,-0.70803,573.88,-0.63658,-0.39665,0.66139,321.66,#38,-0.66512,0.086485,-0.74171,305.11,0.079164,-0.97951,-0.1852,197.67,-0.74252,-0.1819,0.64465,279.5,#39,0.068042,0.98166,-0.17808,273.9,0.786,-0.16268,-0.59644,229.73,-0.61447,-0.09939,-0.78265,287.45,#40,-0.75447,-0.33405,-0.56497,314.22,-0.13891,0.92256,-0.35997,280.13,0.64147,-0.19311,-0.74245,279.42,#41,0.19091,0.86663,-0.46098,221.01,0.41826,0.35303,0.83691,211.78,0.88804,-0.35259,-0.29508,235.13,#42,0.34544,-0.56524,0.74912,241.14,0.76513,0.63184,0.12393,229.74,-0.54337,0.53036,0.65074,289.06,#43,-0.87038,-0.48469,-0.086666,326.25,0.1745,-0.13907,-0.97479,207.9,0.46041,-0.86356,0.20562,651.43,#44,0.20986,0.22373,0.95179,284.08,-0.02883,0.97446,-0.22271,138.97,-0.97731,0.019296,0.21095,238.51,#45,0.5198,-0.70827,0.47766,262.54,0.5969,-0.098898,-0.7962,191.47,0.61116,0.69898,0.37135,223.18,#46,-0.99845,-0.031687,-0.045733,284.59,-0.024622,0.98875,-0.14753,225.68,0.049893,-0.14618,-0.988,229.62,#47,0.75776,0.49451,0.42575,262.64,-0.24129,-0.39387,0.88693,190.76,0.60629,-0.77481,-0.17914,223.21 |
| 20079 | | |
| 20080 | | > ui mousemode right "rotate selected models" |
| 20081 | | |
| 20082 | | > view matrix models |
| 20083 | | > #36,-0.33209,0.77442,-0.53851,271.48,-0.57183,-0.61933,-0.53799,589.35,-0.75015,0.12928,0.64851,251.4,#38,-0.25536,0.13315,-0.95763,278.3,-0.17872,-0.9799,-0.088585,216.46,-0.95018,0.14853,0.27403,316.39,#39,0.35938,0.91587,0.17899,247.73,0.607,-0.08374,-0.79027,246.2,-0.7088,0.39265,-0.58603,300.7,#40,-0.96634,-0.18593,-0.17783,288.66,-0.046133,0.80521,-0.59119,296.68,0.25311,-0.56309,-0.78668,297.95,#41,-0.21994,0.94151,-0.25531,223.74,0.64689,0.33666,0.68425,210.37,0.73018,-0.014662,-0.68309,237.47,#42,0.57403,-0.7268,0.37716,217.79,0.63267,0.68608,0.3592,243.35,-0.51983,0.032429,0.85365,287.61,#43,-0.97949,-0.045608,-0.19625,129.33,0.19787,-0.40139,-0.89428,322.82,-0.037987,-0.91477,0.40218,641.01,#44,0.62803,0.21681,0.74737,276.5,-0.25487,0.96474,-0.065694,147.48,-0.73527,-0.14923,0.66115,287.97,#45,0.20322,-0.95007,0.2368,265.62,0.78129,0.011578,-0.62405,191.94,0.59015,0.31183,0.74463,251.1,#46,-0.91347,0.064231,0.4018,283.29,-0.1107,0.91099,-0.3973,228.69,-0.39155,-0.40741,-0.82505,257.07,#47,0.3952,0.78057,0.48428,265.68,-0.002587,-0.52625,0.85033,191.28,0.91859,-0.3373,-0.20595,251.37 |
| 20084 | | |
| 20085 | | > ui mousemode right "translate selected models" |
| 20086 | | |
| 20087 | | > view matrix models |
| 20088 | | > #36,-0.33209,0.77442,-0.53851,273.75,-0.57183,-0.61933,-0.53799,571.61,-0.75015,0.12928,0.64851,247.18,#38,-0.25536,0.13315,-0.95763,280.57,-0.17872,-0.9799,-0.088585,198.72,-0.95018,0.14853,0.27403,312.17,#39,0.35938,0.91587,0.17899,250.01,0.607,-0.08374,-0.79027,228.47,-0.7088,0.39265,-0.58603,296.48,#40,-0.96634,-0.18593,-0.17783,290.93,-0.046133,0.80521,-0.59119,278.94,0.25311,-0.56309,-0.78668,293.74,#41,-0.21994,0.94151,-0.25531,226.02,0.64689,0.33666,0.68425,192.64,0.73018,-0.014662,-0.68309,233.26,#42,0.57403,-0.7268,0.37716,220.07,0.63267,0.68608,0.3592,225.61,-0.51983,0.032429,0.85365,283.39,#43,-0.97949,-0.045608,-0.19625,131.61,0.19787,-0.40139,-0.89428,305.08,-0.037987,-0.91477,0.40218,636.79,#44,0.62803,0.21681,0.74737,278.78,-0.25487,0.96474,-0.065694,129.74,-0.73527,-0.14923,0.66115,283.76,#45,0.20322,-0.95007,0.2368,267.9,0.78129,0.011578,-0.62405,174.2,0.59015,0.31183,0.74463,246.89,#46,-0.91347,0.064231,0.4018,285.57,-0.1107,0.91099,-0.3973,210.96,-0.39155,-0.40741,-0.82505,252.86,#47,0.3952,0.78057,0.48428,267.96,-0.002587,-0.52625,0.85033,173.54,0.91859,-0.3373,-0.20595,247.16 |
| 20089 | | |
| 20090 | | > view matrix models |
| 20091 | | > #36,-0.33209,0.77442,-0.53851,267.88,-0.57183,-0.61933,-0.53799,565.81,-0.75015,0.12928,0.64851,258.39,#38,-0.25536,0.13315,-0.95763,274.7,-0.17872,-0.9799,-0.088585,192.92,-0.95018,0.14853,0.27403,323.38,#39,0.35938,0.91587,0.17899,244.13,0.607,-0.08374,-0.79027,222.66,-0.7088,0.39265,-0.58603,307.69,#40,-0.96634,-0.18593,-0.17783,285.06,-0.046133,0.80521,-0.59119,273.14,0.25311,-0.56309,-0.78668,304.94,#41,-0.21994,0.94151,-0.25531,220.14,0.64689,0.33666,0.68425,186.83,0.73018,-0.014662,-0.68309,244.46,#42,0.57403,-0.7268,0.37716,214.19,0.63267,0.68608,0.3592,219.81,-0.51983,0.032429,0.85365,294.6,#43,-0.97949,-0.045608,-0.19625,125.73,0.19787,-0.40139,-0.89428,299.28,-0.037987,-0.91477,0.40218,648,#44,0.62803,0.21681,0.74737,272.9,-0.25487,0.96474,-0.065694,123.94,-0.73527,-0.14923,0.66115,294.96,#45,0.20322,-0.95007,0.2368,262.02,0.78129,0.011578,-0.62405,168.4,0.59015,0.31183,0.74463,258.09,#46,-0.91347,0.064231,0.4018,279.69,-0.1107,0.91099,-0.3973,205.15,-0.39155,-0.40741,-0.82505,264.06,#47,0.3952,0.78057,0.48428,262.08,-0.002587,-0.52625,0.85033,167.74,0.91859,-0.3373,-0.20595,258.36 |
| 20092 | | |
| 20093 | | > view matrix models |
| 20094 | | > #36,-0.33209,0.77442,-0.53851,273.57,-0.57183,-0.61933,-0.53799,569.61,-0.75015,0.12928,0.64851,261.33,#38,-0.25536,0.13315,-0.95763,280.39,-0.17872,-0.9799,-0.088585,196.72,-0.95018,0.14853,0.27403,326.32,#39,0.35938,0.91587,0.17899,249.82,0.607,-0.08374,-0.79027,226.46,-0.7088,0.39265,-0.58603,310.63,#40,-0.96634,-0.18593,-0.17783,290.75,-0.046133,0.80521,-0.59119,276.93,0.25311,-0.56309,-0.78668,307.88,#41,-0.21994,0.94151,-0.25531,225.83,0.64689,0.33666,0.68425,190.63,0.73018,-0.014662,-0.68309,247.41,#42,0.57403,-0.7268,0.37716,219.88,0.63267,0.68608,0.3592,223.61,-0.51983,0.032429,0.85365,297.54,#43,-0.97949,-0.045608,-0.19625,131.42,0.19787,-0.40139,-0.89428,303.07,-0.037987,-0.91477,0.40218,650.94,#44,0.62803,0.21681,0.74737,278.59,-0.25487,0.96474,-0.065694,127.74,-0.73527,-0.14923,0.66115,297.91,#45,0.20322,-0.95007,0.2368,267.71,0.78129,0.011578,-0.62405,172.2,0.59015,0.31183,0.74463,261.03,#46,-0.91347,0.064231,0.4018,285.38,-0.1107,0.91099,-0.3973,208.95,-0.39155,-0.40741,-0.82505,267,#47,0.3952,0.78057,0.48428,267.77,-0.002587,-0.52625,0.85033,171.53,0.91859,-0.3373,-0.20595,261.3 |
| 20095 | | |
| 20096 | | > ui mousemode right "rotate selected models" |
| 20097 | | |
| 20098 | | > view matrix models |
| 20099 | | > #36,0.093312,0.86488,-0.49323,146.31,-0.21567,-0.46607,-0.85806,526.72,-0.972,0.18644,0.14304,413.38,#38,0.091092,0.39627,-0.91361,255.1,0.23201,-0.90062,-0.3675,172.58,-0.96844,-0.17849,-0.17398,335.51,#39,0.32564,0.74623,0.58059,222.19,0.91482,-0.093551,-0.39287,200.42,-0.23886,0.65908,-0.71314,321.12,#40,-0.9294,-0.27219,0.24925,243.63,-0.3224,0.92748,-0.18931,252.83,-0.17964,-0.25631,-0.94976,353.11,#41,-0.6113,0.74662,-0.26242,229.67,0.19495,0.46344,0.86442,193.73,0.76701,0.47726,-0.42885,245.26,#42,0.45892,-0.88839,-0.012509,199.68,0.88836,0.45904,-0.0093881,198.71,0.014082,-0.0068042,0.99988,297.33,#43,-0.93933,0.34302,0.00011685,-4.311,0.020915,0.057615,-0.99812,92.075,-0.34238,-0.93756,-0.061294,590.68,#44,0.85492,-0.074664,0.51335,283.7,0.22034,0.94815,-0.22904,124.93,-0.46964,0.30893,0.82705,285.71,#45,-0.23316,-0.94969,0.20909,269.72,0.44918,-0.29589,-0.84302,178.67,0.86248,-0.10264,0.49557,266.43,#46,-0.68145,-0.12347,0.72138,272.15,-0.076401,0.99228,0.097667,211.11,-0.72787,0.011441,-0.68562,291.72,#47,0.10284,0.97005,0.22004,269.91,-0.35187,-0.17143,0.92021,177.97,0.93038,-0.17206,0.32371,266.43 |
| 20100 | | |
| 20101 | | > view matrix models |
| 20102 | | > #36,-0.013617,0.67237,-0.74009,262.08,-0.46659,-0.65891,-0.59003,563.73,-0.88437,0.33728,0.32269,324.78,#38,0.12972,0.076397,-0.9886,247.4,-0.055809,-0.99488,-0.084205,185.79,-0.98998,0.066096,-0.12479,340.98,#39,0.59696,0.69661,0.39796,224.86,0.67235,-0.16377,-0.72189,218.3,-0.4377,0.69851,-0.56613,318.62,#40,-0.98908,0.035376,0.14307,263.19,-0.039286,0.87236,-0.48729,267.17,-0.14205,-0.48759,-0.86144,337.92,#41,-0.48947,0.87182,0.018493,227.28,0.56416,0.30042,0.76907,191.1,0.66494,0.38687,-0.63889,247.13,#42,0.72264,-0.69099,0.017855,202.25,0.66749,0.7043,0.24169,218.14,-0.17958,-0.16274,0.97019,294.87,#43,-0.89235,0.31226,-0.32589,-15.591,0.23763,-0.28882,-0.92742,258.68,-0.38372,-0.90503,0.18353,594.76,#44,0.8643,0.24731,0.43799,257.34,-0.18989,0.96677,-0.17117,120.75,-0.46576,0.064773,0.88254,305.76,#45,-0.046371,-0.99713,-0.059776,260.94,0.69813,0.010451,-0.71589,169.62,0.71447,-0.074928,0.69565,273.31,#46,-0.69278,0.20576,0.69117,274.6,-0.029393,0.94958,-0.31215,204.73,-0.72055,-0.23657,-0.65181,290.04,#47,0.013445,0.8557,0.5173,260.9,-0.12564,-0.5118,0.84987,168.93,0.99198,-0.076423,0.10063,273.5 |
| 20103 | | |
| 20104 | | > ui mousemode right "translate selected models" |
| 20105 | | |
| 20106 | | > view matrix models |
| 20107 | | > #36,-0.013617,0.67237,-0.74009,272.84,-0.46659,-0.65891,-0.59003,545.17,-0.88437,0.33728,0.32269,323.96,#38,0.12972,0.076397,-0.9886,258.17,-0.055809,-0.99488,-0.084205,167.23,-0.98998,0.066096,-0.12479,340.16,#39,0.59696,0.69661,0.39796,235.63,0.67235,-0.16377,-0.72189,199.75,-0.4377,0.69851,-0.56613,317.8,#40,-0.98908,0.035376,0.14307,273.96,-0.039286,0.87236,-0.48729,248.62,-0.14205,-0.48759,-0.86144,337.1,#41,-0.48947,0.87182,0.018493,238.04,0.56416,0.30042,0.76907,172.54,0.66494,0.38687,-0.63889,246.31,#42,0.72264,-0.69099,0.017855,213.01,0.66749,0.7043,0.24169,199.58,-0.17958,-0.16274,0.97019,294.05,#43,-0.89235,0.31226,-0.32589,-4.8246,0.23763,-0.28882,-0.92742,240.13,-0.38372,-0.90503,0.18353,593.94,#44,0.8643,0.24731,0.43799,268.11,-0.18989,0.96677,-0.17117,102.2,-0.46576,0.064773,0.88254,304.94,#45,-0.046371,-0.99713,-0.059776,271.71,0.69813,0.010451,-0.71589,151.07,0.71447,-0.074928,0.69565,272.49,#46,-0.69278,0.20576,0.69117,285.36,-0.029393,0.94958,-0.31215,186.17,-0.72055,-0.23657,-0.65181,289.22,#47,0.013445,0.8557,0.5173,271.67,-0.12564,-0.5118,0.84987,150.38,0.99198,-0.076423,0.10063,272.68 |
| 20108 | | |
| 20109 | | > ui mousemode right "rotate selected models" |
| 20110 | | |
| 20111 | | > view matrix models |
| 20112 | | > #36,-0.31277,0.41013,-0.85672,418.59,-0.65173,-0.74881,-0.12055,503.05,-0.69096,0.52064,0.5015,204.47,#38,-0.039786,-0.30025,-0.95303,263.36,-0.38312,-0.87631,0.29208,185.33,-0.92284,0.37674,-0.080167,339.65,#39,0.74135,0.67104,0.010192,252.05,0.2173,-0.22564,-0.94967,216.34,-0.63497,0.70625,-0.3131,308.41,#40,-0.93873,0.29735,-0.17426,308.39,0.32637,0.60448,-0.7267,248.75,-0.11075,-0.73904,-0.66449,310.8,#41,-0.14028,0.965,0.2216,233.99,0.87791,0.017741,0.4785,171.36,0.45782,0.26167,-0.84966,249.19,#42,0.89011,-0.38568,0.2428,228.03,0.23567,0.84552,0.47911,218.6,-0.39007,-0.36925,0.8435,286.2,#43,-0.77822,0.050011,-0.62599,85.89,0.45883,-0.63531,-0.62117,427.56,-0.42877,-0.77064,0.47147,560.35,#44,0.65315,0.60355,0.45731,242.77,-0.64802,0.75794,-0.074794,114.78,-0.39176,-0.24749,0.88616,326.72,#45,0.32267,-0.91784,-0.2312,260.2,0.82876,0.39196,-0.39941,146.52,0.45721,-0.062734,0.88714,280.42,#46,-0.74423,0.51729,0.42253,288.38,0.050028,0.674,-0.73703,176.24,-0.66604,-0.52739,-0.52749,285.02,#47,0.10176,0.57649,0.81074,259.92,0.16804,-0.81322,0.55716,145.99,0.98051,0.079539,-0.17963,280.82 |
| 20113 | | |
| 20114 | | > view matrix models |
| 20115 | | > #36,-0.16023,0.74534,-0.64714,273.17,-0.59399,-0.59643,-0.53986,552.33,-0.78835,0.29789,0.53829,261.63,#38,-0.053073,0.12156,-0.99116,274.78,-0.20275,-0.9732,-0.1085,181,-0.97779,0.1952,0.076298,335.32,#39,0.48252,0.81862,0.3115,247.4,0.60306,-0.052581,-0.79596,209.64,-0.63522,0.57192,-0.51905,313.07,#40,-0.99636,-0.085208,-0.0013797,286.92,-0.066682,0.7896,-0.60998,261.11,0.053065,-0.60767,-0.79241,317.5,#41,-0.37774,0.91729,-0.12611,237.53,0.65423,0.36079,0.66469,172.04,0.65521,0.16858,-0.7364,247.15,#42,0.6537,-0.73304,0.18797,220.81,0.63778,0.66736,0.38454,205.77,-0.40733,-0.13149,0.90377,294.26,#43,-0.95544,0.14993,-0.25428,60.697,0.1715,-0.41918,-0.89156,289.38,-0.24026,-0.89544,0.37479,620.45,#44,0.7697,0.22149,0.59875,280.3,-0.25186,0.96717,-0.03401,111.49,-0.58663,-0.12462,0.80021,308.74,#45,0.062007,-0.99362,0.094178,276.17,0.79704,-0.0074975,-0.60388,154.96,0.60073,0.11251,0.79149,269.41,#46,-0.81226,0.12574,0.56958,291.45,-0.14168,0.90471,-0.40177,192.27,-0.56583,-0.40704,-0.71705,277.97,#47,0.20033,0.84411,0.49734,276.18,0.024602,-0.51181,0.85875,154.31,0.97942,-0.1598,-0.1233,269.7 |
| 20116 | | |
| 20117 | | > ui mousemode right "translate selected models" |
| 20118 | | |
| 20119 | | > view matrix models |
| 20120 | | > #36,-0.16023,0.74534,-0.64714,267.12,-0.59399,-0.59643,-0.53986,565.33,-0.78835,0.29789,0.53829,260.86,#38,-0.053073,0.12156,-0.99116,268.74,-0.20275,-0.9732,-0.1085,194,-0.97779,0.1952,0.076298,334.55,#39,0.48252,0.81862,0.3115,241.35,0.60306,-0.052581,-0.79596,222.65,-0.63522,0.57192,-0.51905,312.31,#40,-0.99636,-0.085208,-0.0013797,280.87,-0.066682,0.7896,-0.60998,274.11,0.053065,-0.60767,-0.79241,316.73,#41,-0.37774,0.91729,-0.12611,231.49,0.65423,0.36079,0.66469,185.05,0.65521,0.16858,-0.7364,246.38,#42,0.6537,-0.73304,0.18797,214.77,0.63778,0.66736,0.38454,218.77,-0.40733,-0.13149,0.90377,293.49,#43,-0.95544,0.14993,-0.25428,54.652,0.1715,-0.41918,-0.89156,302.38,-0.24026,-0.89544,0.37479,619.69,#44,0.7697,0.22149,0.59875,274.25,-0.25186,0.96717,-0.03401,124.49,-0.58663,-0.12462,0.80021,307.98,#45,0.062007,-0.99362,0.094178,270.13,0.79704,-0.0074975,-0.60388,167.96,0.60073,0.11251,0.79149,268.64,#46,-0.81226,0.12574,0.56958,285.41,-0.14168,0.90471,-0.40177,205.27,-0.56583,-0.40704,-0.71705,277.21,#47,0.20033,0.84411,0.49734,270.14,0.024602,-0.51181,0.85875,167.31,0.97942,-0.1598,-0.1233,268.93 |
| 20121 | | |
| 20122 | | > view matrix models |
| 20123 | | > #36,-0.16023,0.74534,-0.64714,282.03,-0.59399,-0.59643,-0.53986,563.36,-0.78835,0.29789,0.53829,263.36,#38,-0.053073,0.12156,-0.99116,283.64,-0.20275,-0.9732,-0.1085,192.03,-0.97779,0.1952,0.076298,337.05,#39,0.48252,0.81862,0.3115,256.26,0.60306,-0.052581,-0.79596,220.68,-0.63522,0.57192,-0.51905,314.81,#40,-0.99636,-0.085208,-0.0013797,295.78,-0.066682,0.7896,-0.60998,272.14,0.053065,-0.60767,-0.79241,319.23,#41,-0.37774,0.91729,-0.12611,246.4,0.65423,0.36079,0.66469,183.08,0.65521,0.16858,-0.7364,248.88,#42,0.6537,-0.73304,0.18797,229.68,0.63778,0.66736,0.38454,216.81,-0.40733,-0.13149,0.90377,295.99,#43,-0.95544,0.14993,-0.25428,69.559,0.1715,-0.41918,-0.89156,300.41,-0.24026,-0.89544,0.37479,622.19,#44,0.7697,0.22149,0.59875,289.16,-0.25186,0.96717,-0.03401,122.52,-0.58663,-0.12462,0.80021,310.48,#45,0.062007,-0.99362,0.094178,285.03,0.79704,-0.0074975,-0.60388,166,0.60073,0.11251,0.79149,271.14,#46,-0.81226,0.12574,0.56958,300.31,-0.14168,0.90471,-0.40177,203.3,-0.56583,-0.40704,-0.71705,279.71,#47,0.20033,0.84411,0.49734,285.05,0.024602,-0.51181,0.85875,165.34,0.97942,-0.1598,-0.1233,271.43 |
| 20124 | | |
| 20125 | | > ui mousemode right "rotate selected models" |
| 20126 | | |
| 20127 | | > view matrix models |
| 20128 | | > #36,-0.19859,0.6822,-0.70368,315.42,-0.49522,-0.68943,-0.52863,555.3,-0.84576,0.2435,0.47475,301.12,#38,-0.052704,0.028797,-0.99819,281.85,-0.098661,-0.99484,-0.023492,179.93,-0.99372,0.097244,0.055273,336.99,#39,0.54736,0.79943,0.24761,257.62,0.61609,-0.18466,-0.76572,213.05,-0.56641,0.57168,-0.5936,317.48,#40,-0.99912,-0.0014639,-0.041801,301.56,0.020733,0.85064,-0.52534,259.95,0.036327,-0.52575,-0.84986,327.47,#41,-0.32904,0.94293,-0.051101,245.63,0.61787,0.2559,0.74347,183.27,0.71412,0.21306,-0.66681,248.01,#42,0.71663,-0.66666,0.20496,231.15,0.612,0.742,0.27367,213.54,-0.33452,-0.070681,0.93973,298.12,#43,-0.93114,0.12817,-0.34141,73.134,0.28212,-0.34004,-0.8971,278.71,-0.23107,-0.93164,0.28046,629.5,#44,0.75461,0.31088,0.57786,281.53,-0.26227,0.95014,-0.16866,113.19,-0.60148,-0.024281,0.79852,303.6,#45,0.12282,-0.99214,0.023796,282.12,0.72414,0.0732,-0.68576,160.56,0.67863,0.10146,0.72744,268.81,#46,-0.81088,0.21523,0.5442,300.57,-0.0089905,0.92522,-0.37932,195.26,-0.58515,-0.31248,-0.74831,281.25,#47,0.18309,0.79694,0.57565,282.07,-0.09161,-0.56917,0.8171,159.89,0.97882,-0.20234,-0.031202,269.03 |
| 20129 | | |
| 20130 | | > ui mousemode right "translate selected models" |
| 20131 | | |
| 20132 | | > view matrix models |
| 20133 | | > #36,-0.19859,0.6822,-0.70368,306.31,-0.49522,-0.68943,-0.52863,542.7,-0.84576,0.2435,0.47475,307.53,#38,-0.052704,0.028797,-0.99819,272.74,-0.098661,-0.99484,-0.023492,167.33,-0.99372,0.097244,0.055273,343.41,#39,0.54736,0.79943,0.24761,248.5,0.61609,-0.18466,-0.76572,200.46,-0.56641,0.57168,-0.5936,323.9,#40,-0.99912,-0.0014639,-0.041801,292.45,0.020733,0.85064,-0.52534,247.35,0.036327,-0.52575,-0.84986,333.88,#41,-0.32904,0.94293,-0.051101,236.51,0.61787,0.2559,0.74347,170.68,0.71412,0.21306,-0.66681,254.43,#42,0.71663,-0.66666,0.20496,222.04,0.612,0.742,0.27367,200.95,-0.33452,-0.070681,0.93973,304.53,#43,-0.93114,0.12817,-0.34141,64.019,0.28212,-0.34004,-0.8971,266.11,-0.23107,-0.93164,0.28046,635.92,#44,0.75461,0.31088,0.57786,272.41,-0.26227,0.95014,-0.16866,100.6,-0.60148,-0.024281,0.79852,310.01,#45,0.12282,-0.99214,0.023796,273.01,0.72414,0.0732,-0.68576,147.97,0.67863,0.10146,0.72744,275.23,#46,-0.81088,0.21523,0.5442,291.45,-0.0089905,0.92522,-0.37932,182.66,-0.58515,-0.31248,-0.74831,287.66,#47,0.18309,0.79694,0.57565,272.95,-0.09161,-0.56917,0.8171,147.29,0.97882,-0.20234,-0.031202,275.45 |
| 20134 | | |
| 20135 | | > ui mousemode right "rotate selected models" |
| 20136 | | |
| 20137 | | > view matrix models |
| 20138 | | > #36,-0.16756,0.78462,-0.59691,256.18,-0.69887,-0.52158,-0.48942,550.21,-0.69534,0.33515,0.63574,219.47,#38,-0.087126,0.17496,-0.98071,278.23,-0.33213,-0.93323,-0.13698,192.24,-0.9392,0.31379,0.13942,340.66,#39,0.42539,0.84483,0.32452,248.59,0.53263,0.056197,-0.84448,216.57,-0.73168,0.53208,-0.42607,316.28,#40,-0.98887,-0.14856,-0.0084755,285.85,-0.098837,0.69835,-0.7089,269.71,0.11123,-0.70017,-0.70526,311.99,#41,-0.37801,0.90623,-0.18933,237.55,0.71945,0.41626,0.55599,170.23,0.58267,0.073955,-0.80934,256.39,#42,0.60476,-0.76821,0.21005,221.4,0.60397,0.61431,0.50779,209.19,-0.51912,-0.18022,0.83548,299.49,#43,-0.97209,0.12912,-0.19589,72.273,0.099945,-0.52749,-0.84366,328.7,-0.21226,-0.83969,0.49987,619.66,#44,0.75363,0.17081,0.63471,285.76,-0.29621,0.95029,0.09597,120.1,-0.58677,-0.26033,0.76677,323.11,#45,0.051804,-0.98622,0.15711,277.89,0.87126,-0.032256,-0.48975,157.8,0.48807,0.16226,0.85759,278.71,#46,-0.82923,0.065573,0.55505,291.79,-0.24754,0.84729,-0.46991,196.49,-0.5011,-0.52706,-0.68637,281.57,#47,0.24238,0.8589,0.45116,277.94,0.16178,-0.4943,0.85411,157.19,0.9566,-0.13403,-0.25877,279.08 |
| 20139 | | |
| 20140 | | > view matrix models |
| 20141 | | > #36,-0.081555,0.83063,-0.55082,217.11,-0.56608,-0.49347,-0.66033,551.03,-0.82031,0.25796,0.51045,290.98,#38,-0.037028,0.26874,-0.9625,275.38,-0.15317,-0.95331,-0.26028,180.61,-0.98751,0.13779,0.076461,343.05,#39,0.37715,0.82589,0.41913,243.68,0.70342,0.038945,-0.7097,206.02,-0.60246,0.56249,-0.56626,322.69,#40,-0.97425,-0.21162,0.077821,275.12,-0.21848,0.80072,-0.55778,262.5,0.055721,-0.56041,-0.82634,329.82,#41,-0.46133,0.85545,-0.23532,238.55,0.5522,0.48445,0.67852,171.13,0.69444,0.18308,-0.69587,254.77,#42,0.54465,-0.82654,0.14207,217.7,0.75061,0.55598,0.35703,199.26,-0.37408,-0.087817,0.92323,303.86,#43,-0.97389,0.19729,-0.11231,51.859,0.039252,-0.34092,-0.93927,239.4,-0.2236,-0.91915,0.32428,635.4,#44,0.78969,0.072388,0.60922,290.83,-0.10001,0.99492,0.01142,114.32,-0.6053,-0.069946,0.79292,312.47,#45,-0.048785,-0.97949,0.1955,279.65,0.76229,-0.16299,-0.62638,158.82,0.6454,0.11847,0.7546,275.74,#46,-0.79045,-0.017227,0.61229,289.3,-0.23007,0.93476,-0.27072,197.46,-0.56768,-0.35486,-0.74284,286.35,#47,0.20929,0.90864,0.36134,279.76,-0.00064692,-0.3694,0.92927,158.16,0.97785,-0.19472,-0.076723,275.99 |
| 20142 | | |
| 20143 | | > ui mousemode right "translate selected models" |
| 20144 | | |
| 20145 | | > view matrix models |
| 20146 | | > #36,-0.081555,0.83063,-0.55082,214.5,-0.56608,-0.49347,-0.66033,546.37,-0.82031,0.25796,0.51045,283.6,#38,-0.037028,0.26874,-0.9625,272.77,-0.15317,-0.95331,-0.26028,175.95,-0.98751,0.13779,0.076461,335.67,#39,0.37715,0.82589,0.41913,241.07,0.70342,0.038945,-0.7097,201.36,-0.60246,0.56249,-0.56626,315.3,#40,-0.97425,-0.21162,0.077821,272.51,-0.21848,0.80072,-0.55778,257.85,0.055721,-0.56041,-0.82634,322.44,#41,-0.46133,0.85545,-0.23532,235.95,0.5522,0.48445,0.67852,166.47,0.69444,0.18308,-0.69587,247.39,#42,0.54465,-0.82654,0.14207,215.09,0.75061,0.55598,0.35703,194.6,-0.37408,-0.087817,0.92323,296.47,#43,-0.97389,0.19729,-0.11231,49.25,0.039252,-0.34092,-0.93927,234.75,-0.2236,-0.91915,0.32428,628.02,#44,0.78969,0.072388,0.60922,288.22,-0.10001,0.99492,0.01142,109.66,-0.6053,-0.069946,0.79292,305.09,#45,-0.048785,-0.97949,0.1955,277.04,0.76229,-0.16299,-0.62638,154.17,0.6454,0.11847,0.7546,268.36,#46,-0.79045,-0.017227,0.61229,286.69,-0.23007,0.93476,-0.27072,192.8,-0.56768,-0.35486,-0.74284,278.97,#47,0.20929,0.90864,0.36134,277.15,-0.00064692,-0.3694,0.92927,153.51,0.97785,-0.19472,-0.076723,268.61 |
| 20147 | | |
| 20148 | | > fitmap #36 inMap #37 |
| 20149 | | |
| 20150 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 41936 |
| 20151 | | points |
| 20152 | | correlation = 0.6638, correlation about mean = 0.3989, overlap = 19.86 |
| 20153 | | steps = 120, shift = 7.95, angle = 9.21 degrees |
| 20154 | | |
| 20155 | | Position of postprocess_20231221.mrc (#36) relative to emd_3720_2017_leaf.map |
| 20156 | | (#37) coordinates: |
| 20157 | | Matrix rotation and translation |
| 20158 | | -0.53609396 -0.84407508 -0.01185528 402.27426069 |
| 20159 | | 0.84374881 -0.53621844 0.02361709 56.07946034 |
| 20160 | | -0.02629162 0.00265811 0.99965079 -108.53618381 |
| 20161 | | Axis -0.01241634 0.00855226 0.99988634 |
| 20162 | | Axis point 184.79184089 138.62878392 0.00000000 |
| 20163 | | Rotation angle (degrees) 122.43420777 |
| 20164 | | Shift along axis -113.03901729 |
| 20165 | | |
| 20166 | | |
| 20167 | | > fitmap #36 inMap #37 |
| 20168 | | |
| 20169 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 41936 |
| 20170 | | points |
| 20171 | | correlation = 0.6638, correlation about mean = 0.3989, overlap = 19.86 |
| 20172 | | steps = 120, shift = 7.95, angle = 9.21 degrees |
| 20173 | | |
| 20174 | | Position of postprocess_20231221.mrc (#36) relative to emd_3720_2017_leaf.map |
| 20175 | | (#37) coordinates: |
| 20176 | | Matrix rotation and translation |
| 20177 | | -0.53609396 -0.84407508 -0.01185528 402.27426069 |
| 20178 | | 0.84374881 -0.53621844 0.02361709 56.07946034 |
| 20179 | | -0.02629162 0.00265811 0.99965079 -108.53618381 |
| 20180 | | Axis -0.01241634 0.00855226 0.99988634 |
| 20181 | | Axis point 184.79184089 138.62878392 0.00000000 |
| 20182 | | Rotation angle (degrees) 122.43420777 |
| 20183 | | Shift along axis -113.03901729 |
| 20184 | | |
| 20185 | | |
| 20186 | | > fitmap #36 inMap #37 |
| 20187 | | |
| 20188 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 41936 |
| 20189 | | points |
| 20190 | | correlation = 0.6638, correlation about mean = 0.3989, overlap = 19.86 |
| 20191 | | steps = 120, shift = 7.95, angle = 9.21 degrees |
| 20192 | | |
| 20193 | | Position of postprocess_20231221.mrc (#36) relative to emd_3720_2017_leaf.map |
| 20194 | | (#37) coordinates: |
| 20195 | | Matrix rotation and translation |
| 20196 | | -0.53609396 -0.84407508 -0.01185528 402.27426069 |
| 20197 | | 0.84374881 -0.53621844 0.02361709 56.07946034 |
| 20198 | | -0.02629162 0.00265811 0.99965079 -108.53618381 |
| 20199 | | Axis -0.01241634 0.00855226 0.99988634 |
| 20200 | | Axis point 184.79184089 138.62878392 0.00000000 |
| 20201 | | Rotation angle (degrees) 122.43420777 |
| 20202 | | Shift along axis -113.03901729 |
| 20203 | | |
| 20204 | | |
| 20205 | | > ui mousemode right "rotate selected models" |
| 20206 | | |
| 20207 | | > view matrix models |
| 20208 | | > #36,-0.065537,0.95596,-0.28609,128.98,-0.68929,-0.25068,-0.67973,533.55,-0.72151,0.15265,0.67536,244.22,#38,-0.15019,0.51269,-0.84533,283.8,-0.30757,-0.83683,-0.45289,197.9,-0.9396,0.19198,0.28338,325.99,#39,0.095098,0.86759,0.4881,244.08,0.66844,0.30769,-0.67714,212.18,-0.73766,0.39066,-0.55067,309.15,#40,-0.87005,-0.48575,0.08401,261.39,-0.41845,0.63764,-0.64678,274.65,0.26061,-0.59788,-0.75804,303.88,#41,-0.47001,0.72786,-0.49931,237.27,0.53583,0.68481,0.49388,167,0.70141,-0.035423,-0.71188,247.76,#42,0.27905,-0.94115,0.1907,217.97,0.78625,0.33794,0.51731,196.99,-0.55132,0.0055821,0.83428,296.38,#43,-0.97614,0.13073,0.17337,100.57,-0.2132,-0.42571,-0.87938,249.75,-0.041162,-0.89537,0.44343,646.33,#44,0.68688,-0.186,0.70257,310.16,-0.013747,0.9632,0.26844,132.8,-0.72664,-0.19404,0.65905,300.74,#45,-0.1344,-0.87902,0.45746,282.85,0.8223,-0.35654,-0.44351,167.52,0.55295,0.31656,0.77074,261.96,#46,-0.78751,-0.30094,0.53783,284.24,-0.48461,0.84153,-0.23871,208.49,-0.38077,-0.44862,-0.80855,266.15,#47,0.35135,0.93027,0.10561,283.16,0.19632,-0.1835,0.96322,166.94,0.91543,-0.31769,-0.2471,262.26 |
| 20209 | | |
| 20210 | | > fitmap #36 inMap #37 |
| 20211 | | |
| 20212 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 41936 |
| 20213 | | points |
| 20214 | | correlation = 0.6638, correlation about mean = 0.3988, overlap = 19.85 |
| 20215 | | steps = 156, shift = 4.54, angle = 14.5 degrees |
| 20216 | | |
| 20217 | | Position of postprocess_20231221.mrc (#36) relative to emd_3720_2017_leaf.map |
| 20218 | | (#37) coordinates: |
| 20219 | | Matrix rotation and translation |
| 20220 | | -0.53620908 -0.84400250 -0.01181641 402.28711030 |
| 20221 | | 0.84367320 -0.53633217 0.02373510 56.06758820 |
| 20222 | | -0.02637001 0.00275779 0.99964846 -108.51146781 |
| 20223 | | Axis -0.01242828 0.00862247 0.99988559 |
| 20224 | | Axis point 184.80143895 138.61200459 0.00000000 |
| 20225 | | Rotation angle (degrees) 122.44205518 |
| 20226 | | Shift along axis -113.01535017 |
| 20227 | | |
| 20228 | | |
| 20229 | | > fitmap #36 inMap #37 |
| 20230 | | |
| 20231 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 41936 |
| 20232 | | points |
| 20233 | | correlation = 0.6638, correlation about mean = 0.3988, overlap = 19.85 |
| 20234 | | steps = 156, shift = 4.54, angle = 14.5 degrees |
| 20235 | | |
| 20236 | | Position of postprocess_20231221.mrc (#36) relative to emd_3720_2017_leaf.map |
| 20237 | | (#37) coordinates: |
| 20238 | | Matrix rotation and translation |
| 20239 | | -0.53620908 -0.84400250 -0.01181641 402.28711030 |
| 20240 | | 0.84367320 -0.53633217 0.02373510 56.06758820 |
| 20241 | | -0.02637001 0.00275779 0.99964846 -108.51146781 |
| 20242 | | Axis -0.01242828 0.00862247 0.99988559 |
| 20243 | | Axis point 184.80143895 138.61200459 0.00000000 |
| 20244 | | Rotation angle (degrees) 122.44205518 |
| 20245 | | Shift along axis -113.01535017 |
| 20246 | | |
| 20247 | | |
| 20248 | | > ui mousemode right "translate selected models" |
| 20249 | | |
| 20250 | | > view matrix models |
| 20251 | | > #36,-0.065537,0.95596,-0.28609,132.48,-0.68929,-0.25068,-0.67973,535.05,-0.72151,0.15265,0.67536,246.35,#38,-0.15019,0.51269,-0.84533,287.3,-0.30757,-0.83683,-0.45289,199.4,-0.9396,0.19198,0.28338,328.12,#39,0.095098,0.86759,0.4881,247.58,0.66844,0.30769,-0.67714,213.68,-0.73766,0.39066,-0.55067,311.28,#40,-0.87005,-0.48575,0.08401,264.89,-0.41845,0.63764,-0.64678,276.15,0.26061,-0.59788,-0.75804,306.01,#41,-0.47001,0.72786,-0.49931,240.76,0.53583,0.68481,0.49388,168.5,0.70141,-0.035423,-0.71188,249.89,#42,0.27905,-0.94115,0.1907,221.47,0.78625,0.33794,0.51731,198.5,-0.55132,0.0055821,0.83428,298.51,#43,-0.97614,0.13073,0.17337,104.06,-0.2132,-0.42571,-0.87938,251.25,-0.041162,-0.89537,0.44343,648.46,#44,0.68688,-0.186,0.70257,313.65,-0.013747,0.9632,0.26844,134.31,-0.72664,-0.19404,0.65905,302.88,#45,-0.1344,-0.87902,0.45746,286.35,0.8223,-0.35654,-0.44351,169.02,0.55295,0.31656,0.77074,264.09,#46,-0.78751,-0.30094,0.53783,287.73,-0.48461,0.84153,-0.23871,210,-0.38077,-0.44862,-0.80855,268.29,#47,0.35135,0.93027,0.10561,286.66,0.19632,-0.1835,0.96322,168.45,0.91543,-0.31769,-0.2471,264.39 |
| 20252 | | |
| 20253 | | > ui mousemode right "rotate selected models" |
| 20254 | | |
| 20255 | | > view matrix models |
| 20256 | | > #36,-0.050417,0.98638,-0.15654,94.782,-0.69213,-0.1475,-0.70654,522,-0.72001,0.072722,0.69014,257.94,#38,-0.19253,0.61249,-0.76668,290.47,-0.32152,-0.77754,-0.54042,204.72,-0.92712,0.14246,0.34663,323.93,#39,-0.036605,0.85889,0.51084,248.23,0.675,0.3982,-0.62114,214.69,-0.73691,0.32208,-0.59433,310.48,#40,-0.79668,-0.59762,0.090311,258.32,-0.5088,0.58247,-0.63392,278.66,0.32624,-0.55098,-0.76811,304.39,#41,-0.46567,0.64579,-0.60507,241.28,0.48251,0.75844,0.43812,169.07,0.74184,-0.087932,-0.66479,249.44,#42,0.14833,-0.96812,0.20187,222.92,0.81166,0.23579,0.53442,196.82,-0.56498,0.084577,0.82076,299.72,#43,-0.94811,0.102,0.30114,129.4,-0.31592,-0.40909,-0.85606,236.67,0.035873,-0.90678,0.42008,658.47,#44,0.62315,-0.3023,0.72131,321.45,0.059705,0.93798,0.34152,142.81,-0.77982,-0.16975,0.60255,296.06,#45,-0.17553,-0.80759,0.56302,287.55,0.80314,-0.44822,-0.39251,174.43,0.56934,0.38329,0.72728,259.92,#46,-0.75995,-0.42398,0.49266,284.92,-0.5656,0.80484,-0.17982,215.32,-0.32027,-0.4153,-0.85144,264.35,#47,0.40173,0.91559,-0.017617,287.94,0.23233,-0.083291,0.96906,173.9,0.8858,-0.39339,-0.24618,260.18 |
| 20257 | | |
| 20258 | | > fitmap #36 inMap #37 |
| 20259 | | |
| 20260 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 41936 |
| 20261 | | points |
| 20262 | | correlation = 0.6638, correlation about mean = 0.3988, overlap = 19.85 |
| 20263 | | steps = 220, shift = 7.58, angle = 21.8 degrees |
| 20264 | | |
| 20265 | | Position of postprocess_20231221.mrc (#36) relative to emd_3720_2017_leaf.map |
| 20266 | | (#37) coordinates: |
| 20267 | | Matrix rotation and translation |
| 20268 | | -0.53607361 -0.84408781 -0.01186894 402.29604491 |
| 20269 | | 0.84376073 -0.53619838 0.02364655 56.04641062 |
| 20270 | | -0.02632388 0.00266175 0.99964993 -108.50518664 |
| 20271 | | Axis -0.01243145 0.00856314 0.99988606 |
| 20272 | | Axis point 184.81046621 138.62140563 0.00000000 |
| 20273 | | Rotation angle (degrees) 122.43286561 |
| 20274 | | Shift along axis -113.01401480 |
| 20275 | | |
| 20276 | | |
| 20277 | | > fitmap #36 inMap #37 |
| 20278 | | |
| 20279 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 41936 |
| 20280 | | points |
| 20281 | | correlation = 0.6638, correlation about mean = 0.3988, overlap = 19.85 |
| 20282 | | steps = 220, shift = 7.58, angle = 21.8 degrees |
| 20283 | | |
| 20284 | | Position of postprocess_20231221.mrc (#36) relative to emd_3720_2017_leaf.map |
| 20285 | | (#37) coordinates: |
| 20286 | | Matrix rotation and translation |
| 20287 | | -0.53607361 -0.84408781 -0.01186894 402.29604491 |
| 20288 | | 0.84376073 -0.53619838 0.02364655 56.04641062 |
| 20289 | | -0.02632388 0.00266175 0.99964993 -108.50518664 |
| 20290 | | Axis -0.01243145 0.00856314 0.99988606 |
| 20291 | | Axis point 184.81046621 138.62140563 0.00000000 |
| 20292 | | Rotation angle (degrees) 122.43286561 |
| 20293 | | Shift along axis -113.01401480 |
| 20294 | | |
| 20295 | | |
| 20296 | | > fitmap #36 inMap #37 |
| 20297 | | |
| 20298 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 41936 |
| 20299 | | points |
| 20300 | | correlation = 0.6638, correlation about mean = 0.3988, overlap = 19.85 |
| 20301 | | steps = 220, shift = 7.58, angle = 21.8 degrees |
| 20302 | | |
| 20303 | | Position of postprocess_20231221.mrc (#36) relative to emd_3720_2017_leaf.map |
| 20304 | | (#37) coordinates: |
| 20305 | | Matrix rotation and translation |
| 20306 | | -0.53607361 -0.84408781 -0.01186894 402.29604491 |
| 20307 | | 0.84376073 -0.53619838 0.02364655 56.04641062 |
| 20308 | | -0.02632388 0.00266175 0.99964993 -108.50518664 |
| 20309 | | Axis -0.01243145 0.00856314 0.99988606 |
| 20310 | | Axis point 184.81046621 138.62140563 0.00000000 |
| 20311 | | Rotation angle (degrees) 122.43286561 |
| 20312 | | Shift along axis -113.01401480 |
| 20313 | | |
| 20314 | | |
| 20315 | | > view matrix models |
| 20316 | | > #36,-0.11403,0.90821,-0.40267,178.49,-0.69628,-0.36218,-0.6197,544.72,-0.70866,0.20971,0.67367,232.87,#38,-0.13921,0.39392,-0.90854,285.89,-0.31342,-0.88784,-0.33692,195.01,-0.93936,0.23785,0.24706,330.28,#39,0.21519,0.8781,0.42735,249.17,0.63027,0.20939,-0.74761,213.59,-0.74596,0.43023,-0.50838,311,#40,-0.92758,-0.37134,0.041313,274.37,-0.30035,0.67533,-0.67359,273.28,0.22223,-0.63721,-0.73795,305.3,#41,-0.43473,0.80839,-0.39688,239.92,0.60951,0.58854,0.53114,167.86,0.66295,-0.010997,-0.74858,250.33,#42,0.40264,-0.89074,0.21087,222.05,0.72977,0.45143,0.51347,201.39,-0.55256,-0.052859,0.8318,297.17,#43,-0.99172,0.12217,0.039548,94.434,-0.092294,-0.46398,-0.88102,278.19,-0.089289,-0.87738,0.47141,639,#44,0.71599,-0.054344,0.69599,305.18,-0.11909,0.97284,0.19847,126.47,-0.68788,-0.22499,0.69008,307.93,#45,-0.0589,-0.9316,0.35867,284.42,0.84805,-0.23624,-0.47433,163.16,0.52663,0.27624,0.80396,266.97,#46,-0.8213,-0.17042,0.54444,290.69,-0.39449,0.85906,-0.3262,203.76,-0.41212,-0.48268,-0.77277,270.33,#47,0.3259,0.91513,0.23732,284.65,0.17756,-0.3058,0.93539,162.56,0.92858,-0.2627,-0.26215,267.3 |
| 20317 | | |
| 20318 | | > view matrix models |
| 20319 | | > #36,0.013272,0.97765,-0.20983,93.112,-0.69251,-0.14239,-0.70721,521.27,-0.72128,0.1547,0.67515,245.96,#38,-0.11301,0.60248,-0.79009,284.25,-0.32269,-0.77434,-0.54431,205.02,-0.93973,0.19345,0.28192,328.21,#39,0.02142,0.82703,0.56174,243.22,0.67466,0.4027,-0.6186,214.77,-0.73782,0.39224,-0.54934,311.29,#40,-0.81845,-0.55265,0.15722,253.46,-0.51285,0.57927,-0.63359,278.78,0.25908,-0.59919,-0.75753,306.02,#41,-0.52831,0.64696,-0.54985,241.62,0.48024,0.76175,0.43486,169.1,0.70019,-0.034323,-0.71313,249.9,#42,0.19069,-0.97299,0.13007,218.99,0.81231,0.2308,0.53561,196.76,-0.55117,0.0035211,0.83439,298.47,#43,-0.94617,0.17926,0.26951,95.719,-0.32081,-0.40873,-0.85441,236.19,-0.043005,-0.89488,0.44423,648.16,#44,0.68561,-0.29193,0.66687,317.76,0.062778,0.93637,0.34536,143.27,-0.72525,-0.19492,0.66031,303.06,#45,-0.22646,-0.83438,0.50251,286.83,0.80233,-0.45231,-0.38946,174.7,0.55225,0.31499,0.77188,264.2,#46,-0.72773,-0.39205,0.56277,283.62,-0.56958,0.80256,-0.17743,215.58,-0.38209,-0.44966,-0.80735,268.37,#47,0.32537,0.94558,-0.0020339,287.2,0.23457,-0.07863,0.96891,174.17,0.91603,-0.31573,-0.24739,264.5 |
| 20320 | | |
| 20321 | | > view matrix models |
| 20322 | | > #36,-0.14951,0.80671,-0.57173,243.12,-0.64566,-0.51758,-0.56146,549.54,-0.74885,0.28519,0.59824,244.51,#38,-0.085158,0.21226,-0.9735,279.51,-0.25753,-0.94853,-0.18429,183.96,-0.96251,0.23501,0.13544,335.84,#39,0.39772,0.84795,0.35044,248.74,0.60592,0.044072,-0.7943,209.08,-0.68897,0.52825,-0.49626,313.76,#40,-0.98334,-0.18151,0.0097117,283.99,-0.14431,0.74705,-0.64892,263.74,0.11053,-0.63951,-0.76079,313.54,#41,-0.39763,0.89121,-0.21826,238.75,0.65502,0.44229,0.61264,167.39,0.64252,0.10064,-0.75963,250.37,#42,0.57666,-0.79201,0.20047,221.66,0.66634,0.59793,0.44551,202.08,-0.47271,-0.12333,0.87255,296.64,#43,-0.97733,0.13913,-0.15956,71.763,0.080654,-0.45217,-0.88828,289.48,-0.19574,-0.88101,0.4307,626.67,#44,0.75751,0.13321,0.63908,289.48,-0.21917,0.97404,0.056749,113.82,-0.61493,-0.18306,0.76704,312.39,#45,0.025308,-0.98257,0.18417,279.75,0.82993,-0.08205,-0.55179,154.69,0.55729,0.16681,0.81339,271.28,#46,-0.82505,0.028912,0.56432,292.27,-0.23659,0.88926,-0.39146,193.51,-0.51315,-0.45648,-0.72685,277.19,#47,0.2467,0.87484,0.41689,279.84,0.092232,-0.44943,0.88854,154.05,0.96469,-0.18076,-0.19156,271.6 |
| 20323 | | |
| 20324 | | > fitmap #36 inMap #37 |
| 20325 | | |
| 20326 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 41936 |
| 20327 | | points |
| 20328 | | correlation = 0.6638, correlation about mean = 0.3988, overlap = 19.85 |
| 20329 | | steps = 116, shift = 10.7, angle = 6.02 degrees |
| 20330 | | |
| 20331 | | Position of postprocess_20231221.mrc (#36) relative to emd_3720_2017_leaf.map |
| 20332 | | (#37) coordinates: |
| 20333 | | Matrix rotation and translation |
| 20334 | | -0.53604611 -0.84410513 -0.01187962 402.29755272 |
| 20335 | | 0.84377740 -0.53617111 0.02366990 56.02829232 |
| 20336 | | -0.02634940 0.00266441 0.99964925 -108.49711526 |
| 20337 | | Axis -0.01244346 0.00857176 0.99988584 |
| 20338 | | Axis point 184.81473908 138.61703908 0.00000000 |
| 20339 | | Rotation angle (degrees) 122.43102963 |
| 20340 | | Shift along axis -113.01044181 |
| 20341 | | |
| 20342 | | |
| 20343 | | > fitmap #36 inMap #37 |
| 20344 | | |
| 20345 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 41936 |
| 20346 | | points |
| 20347 | | correlation = 0.6638, correlation about mean = 0.3988, overlap = 19.85 |
| 20348 | | steps = 116, shift = 10.7, angle = 6.02 degrees |
| 20349 | | |
| 20350 | | Position of postprocess_20231221.mrc (#36) relative to emd_3720_2017_leaf.map |
| 20351 | | (#37) coordinates: |
| 20352 | | Matrix rotation and translation |
| 20353 | | -0.53604611 -0.84410513 -0.01187962 402.29755272 |
| 20354 | | 0.84377740 -0.53617111 0.02366990 56.02829232 |
| 20355 | | -0.02634940 0.00266441 0.99964925 -108.49711526 |
| 20356 | | Axis -0.01244346 0.00857176 0.99988584 |
| 20357 | | Axis point 184.81473908 138.61703908 0.00000000 |
| 20358 | | Rotation angle (degrees) 122.43102963 |
| 20359 | | Shift along axis -113.01044181 |
| 20360 | | |
| 20361 | | |
| 20362 | | > fitmap #36 inMap #37 |
| 20363 | | |
| 20364 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 41936 |
| 20365 | | points |
| 20366 | | correlation = 0.6638, correlation about mean = 0.3988, overlap = 19.85 |
| 20367 | | steps = 116, shift = 10.7, angle = 6.02 degrees |
| 20368 | | |
| 20369 | | Position of postprocess_20231221.mrc (#36) relative to emd_3720_2017_leaf.map |
| 20370 | | (#37) coordinates: |
| 20371 | | Matrix rotation and translation |
| 20372 | | -0.53604611 -0.84410513 -0.01187962 402.29755272 |
| 20373 | | 0.84377740 -0.53617111 0.02366990 56.02829232 |
| 20374 | | -0.02634940 0.00266441 0.99964925 -108.49711526 |
| 20375 | | Axis -0.01244346 0.00857176 0.99988584 |
| 20376 | | Axis point 184.81473908 138.61703908 0.00000000 |
| 20377 | | Rotation angle (degrees) 122.43102963 |
| 20378 | | Shift along axis -113.01044181 |
| 20379 | | |
| 20380 | | |
| 20381 | | > fitmap #36 inMap #37 |
| 20382 | | |
| 20383 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 41936 |
| 20384 | | points |
| 20385 | | correlation = 0.6638, correlation about mean = 0.3988, overlap = 19.85 |
| 20386 | | steps = 116, shift = 10.7, angle = 6.02 degrees |
| 20387 | | |
| 20388 | | Position of postprocess_20231221.mrc (#36) relative to emd_3720_2017_leaf.map |
| 20389 | | (#37) coordinates: |
| 20390 | | Matrix rotation and translation |
| 20391 | | -0.53604611 -0.84410513 -0.01187962 402.29755272 |
| 20392 | | 0.84377740 -0.53617111 0.02366990 56.02829232 |
| 20393 | | -0.02634940 0.00266441 0.99964925 -108.49711526 |
| 20394 | | Axis -0.01244346 0.00857176 0.99988584 |
| 20395 | | Axis point 184.81473908 138.61703908 0.00000000 |
| 20396 | | Rotation angle (degrees) 122.43102963 |
| 20397 | | Shift along axis -113.01044181 |
| 20398 | | |
| 20399 | | |
| 20400 | | > fitmap #36 inMap #37 |
| 20401 | | |
| 20402 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 41936 |
| 20403 | | points |
| 20404 | | correlation = 0.6638, correlation about mean = 0.3988, overlap = 19.85 |
| 20405 | | steps = 116, shift = 10.7, angle = 6.02 degrees |
| 20406 | | |
| 20407 | | Position of postprocess_20231221.mrc (#36) relative to emd_3720_2017_leaf.map |
| 20408 | | (#37) coordinates: |
| 20409 | | Matrix rotation and translation |
| 20410 | | -0.53604611 -0.84410513 -0.01187962 402.29755272 |
| 20411 | | 0.84377740 -0.53617111 0.02366990 56.02829232 |
| 20412 | | -0.02634940 0.00266441 0.99964925 -108.49711526 |
| 20413 | | Axis -0.01244346 0.00857176 0.99988584 |
| 20414 | | Axis point 184.81473908 138.61703908 0.00000000 |
| 20415 | | Rotation angle (degrees) 122.43102963 |
| 20416 | | Shift along axis -113.01044181 |
| 20417 | | |
| 20418 | | |
| 20419 | | > fitmap #36 inMap #37 |
| 20420 | | |
| 20421 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 41936 |
| 20422 | | points |
| 20423 | | correlation = 0.6638, correlation about mean = 0.3988, overlap = 19.85 |
| 20424 | | steps = 116, shift = 10.7, angle = 6.02 degrees |
| 20425 | | |
| 20426 | | Position of postprocess_20231221.mrc (#36) relative to emd_3720_2017_leaf.map |
| 20427 | | (#37) coordinates: |
| 20428 | | Matrix rotation and translation |
| 20429 | | -0.53604611 -0.84410513 -0.01187962 402.29755272 |
| 20430 | | 0.84377740 -0.53617111 0.02366990 56.02829232 |
| 20431 | | -0.02634940 0.00266441 0.99964925 -108.49711526 |
| 20432 | | Axis -0.01244346 0.00857176 0.99988584 |
| 20433 | | Axis point 184.81473908 138.61703908 0.00000000 |
| 20434 | | Rotation angle (degrees) 122.43102963 |
| 20435 | | Shift along axis -113.01044181 |
| 20436 | | |
| 20437 | | |
| 20438 | | > fitmap #36 inMap #37 |
| 20439 | | |
| 20440 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 41936 |
| 20441 | | points |
| 20442 | | correlation = 0.6638, correlation about mean = 0.3988, overlap = 19.85 |
| 20443 | | steps = 116, shift = 10.7, angle = 6.02 degrees |
| 20444 | | |
| 20445 | | Position of postprocess_20231221.mrc (#36) relative to emd_3720_2017_leaf.map |
| 20446 | | (#37) coordinates: |
| 20447 | | Matrix rotation and translation |
| 20448 | | -0.53604611 -0.84410513 -0.01187962 402.29755272 |
| 20449 | | 0.84377740 -0.53617111 0.02366990 56.02829232 |
| 20450 | | -0.02634940 0.00266441 0.99964925 -108.49711526 |
| 20451 | | Axis -0.01244346 0.00857176 0.99988584 |
| 20452 | | Axis point 184.81473908 138.61703908 0.00000000 |
| 20453 | | Rotation angle (degrees) 122.43102963 |
| 20454 | | Shift along axis -113.01044181 |
| 20455 | | |
| 20456 | | |
| 20457 | | > ui mousemode right "translate selected models" |
| 20458 | | |
| 20459 | | > view matrix models |
| 20460 | | > #36,-0.14951,0.80671,-0.57173,238.38,-0.64566,-0.51758,-0.56146,549.39,-0.74885,0.28519,0.59824,244.73,#38,-0.085158,0.21226,-0.9735,274.78,-0.25753,-0.94853,-0.18429,183.8,-0.96251,0.23501,0.13544,336.05,#39,0.39772,0.84795,0.35044,244,0.60592,0.044072,-0.7943,208.93,-0.68897,0.52825,-0.49626,313.98,#40,-0.98334,-0.18151,0.0097117,279.25,-0.14431,0.74705,-0.64892,263.59,0.11053,-0.63951,-0.76079,313.75,#41,-0.39763,0.89121,-0.21826,234.01,0.65502,0.44229,0.61264,167.24,0.64252,0.10064,-0.75963,250.58,#42,0.57666,-0.79201,0.20047,216.92,0.66634,0.59793,0.44551,201.93,-0.47271,-0.12333,0.87255,296.85,#43,-0.97733,0.13913,-0.15956,67.025,0.080654,-0.45217,-0.88828,289.33,-0.19574,-0.88101,0.4307,626.89,#44,0.75751,0.13321,0.63908,284.74,-0.21917,0.97404,0.056749,113.67,-0.61493,-0.18306,0.76704,312.6,#45,0.025308,-0.98257,0.18417,275.02,0.82993,-0.08205,-0.55179,154.54,0.55729,0.16681,0.81339,271.5,#46,-0.82505,0.028912,0.56432,287.53,-0.23659,0.88926,-0.39146,193.36,-0.51315,-0.45648,-0.72685,277.4,#47,0.2467,0.87484,0.41689,275.1,0.092232,-0.44943,0.88854,153.9,0.96469,-0.18076,-0.19156,271.82 |
| 20461 | | |
| 20462 | | > fitmap #36 inMap #37 |
| 20463 | | |
| 20464 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 41936 |
| 20465 | | points |
| 20466 | | correlation = 0.6638, correlation about mean = 0.3989, overlap = 19.86 |
| 20467 | | steps = 100, shift = 9.01, angle = 6.01 degrees |
| 20468 | | |
| 20469 | | Position of postprocess_20231221.mrc (#36) relative to emd_3720_2017_leaf.map |
| 20470 | | (#37) coordinates: |
| 20471 | | Matrix rotation and translation |
| 20472 | | -0.53613146 -0.84405165 -0.01182794 402.27530857 |
| 20473 | | 0.84372460 -0.53625512 0.02364888 56.08871721 |
| 20474 | | -0.02630367 0.00269939 0.99965036 -108.53812129 |
| 20475 | | Axis -0.01241107 0.00857583 0.99988620 |
| 20476 | | Axis point 184.79018629 138.62940526 0.00000000 |
| 20477 | | Rotation angle (degrees) 122.43674034 |
| 20478 | | Shift along axis -113.03742918 |
| 20479 | | |
| 20480 | | |
| 20481 | | > fitmap #36 inMap #37 |
| 20482 | | |
| 20483 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 41936 |
| 20484 | | points |
| 20485 | | correlation = 0.6638, correlation about mean = 0.3989, overlap = 19.86 |
| 20486 | | steps = 100, shift = 9.01, angle = 6.01 degrees |
| 20487 | | |
| 20488 | | Position of postprocess_20231221.mrc (#36) relative to emd_3720_2017_leaf.map |
| 20489 | | (#37) coordinates: |
| 20490 | | Matrix rotation and translation |
| 20491 | | -0.53613146 -0.84405165 -0.01182794 402.27530857 |
| 20492 | | 0.84372460 -0.53625512 0.02364888 56.08871721 |
| 20493 | | -0.02630367 0.00269939 0.99965036 -108.53812129 |
| 20494 | | Axis -0.01241107 0.00857583 0.99988620 |
| 20495 | | Axis point 184.79018629 138.62940526 0.00000000 |
| 20496 | | Rotation angle (degrees) 122.43674034 |
| 20497 | | Shift along axis -113.03742918 |
| 20498 | | |
| 20499 | | |
| 20500 | | > fitmap #36 inMap #37 |
| 20501 | | |
| 20502 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 41936 |
| 20503 | | points |
| 20504 | | correlation = 0.6638, correlation about mean = 0.3989, overlap = 19.86 |
| 20505 | | steps = 100, shift = 9.01, angle = 6.01 degrees |
| 20506 | | |
| 20507 | | Position of postprocess_20231221.mrc (#36) relative to emd_3720_2017_leaf.map |
| 20508 | | (#37) coordinates: |
| 20509 | | Matrix rotation and translation |
| 20510 | | -0.53613146 -0.84405165 -0.01182794 402.27530857 |
| 20511 | | 0.84372460 -0.53625512 0.02364888 56.08871721 |
| 20512 | | -0.02630367 0.00269939 0.99965036 -108.53812129 |
| 20513 | | Axis -0.01241107 0.00857583 0.99988620 |
| 20514 | | Axis point 184.79018629 138.62940526 0.00000000 |
| 20515 | | Rotation angle (degrees) 122.43674034 |
| 20516 | | Shift along axis -113.03742918 |
| 20517 | | |
| 20518 | | |
| 20519 | | > fitmap #36 inMap #37 |
| 20520 | | |
| 20521 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 41936 |
| 20522 | | points |
| 20523 | | correlation = 0.6638, correlation about mean = 0.399, overlap = 19.86 |
| 20524 | | steps = 44, shift = 0.00723, angle = 0.00449 degrees |
| 20525 | | |
| 20526 | | Position of postprocess_20231221.mrc (#36) relative to emd_3720_2017_leaf.map |
| 20527 | | (#37) coordinates: |
| 20528 | | Matrix rotation and translation |
| 20529 | | -0.53615244 -0.84403825 -0.01183341 402.28427282 |
| 20530 | | 0.84371314 -0.53627643 0.02357444 56.11035694 |
| 20531 | | -0.02624370 0.00265549 0.99965206 -108.53922466 |
| 20532 | | Axis -0.01239316 0.00853720 0.99988676 |
| 20533 | | Axis point 184.79135404 138.63796538 0.00000000 |
| 20534 | | Rotation angle (degrees) 122.43811842 |
| 20535 | | Shift along axis -113.03348140 |
| 20536 | | |
| 20537 | | |
| 20538 | | > select subtract #36 |
| 20539 | | |
| 20540 | | 40824 atoms, 41582 bonds, 1 pseudobond, 5145 residues, 11 models selected |
| 20541 | | |
| 20542 | | > select subtract #38 |
| 20543 | | |
| 20544 | | 31014 atoms, 31550 bonds, 1 pseudobond, 3912 residues, 10 models selected |
| 20545 | | |
| 20546 | | > select subtract #39 |
| 20547 | | |
| 20548 | | 23513 atoms, 23931 bonds, 1 pseudobond, 2959 residues, 9 models selected |
| 20549 | | |
| 20550 | | > select subtract #40 |
| 20551 | | |
| 20552 | | 22056 atoms, 22448 bonds, 1 pseudobond, 2778 residues, 8 models selected |
| 20553 | | |
| 20554 | | > hide #!37 models |
| 20555 | | |
| 20556 | | > select subtract #41 |
| 20557 | | |
| 20558 | | 20599 atoms, 20965 bonds, 1 pseudobond, 2597 residues, 7 models selected |
| 20559 | | |
| 20560 | | > select subtract #42 |
| 20561 | | |
| 20562 | | 13385 atoms, 13592 bonds, 1 pseudobond, 1692 residues, 6 models selected |
| 20563 | | |
| 20564 | | > select subtract #43 |
| 20565 | | |
| 20566 | | 11923 atoms, 12111 bonds, 1 pseudobond, 1513 residues, 5 models selected |
| 20567 | | |
| 20568 | | > select subtract #44 |
| 20569 | | |
| 20570 | | 5250 atoms, 5325 bonds, 660 residues, 3 models selected |
| 20571 | | |
| 20572 | | > select subtract #45 |
| 20573 | | |
| 20574 | | 3830 atoms, 3884 bonds, 483 residues, 2 models selected |
| 20575 | | |
| 20576 | | > select subtract #46 |
| 20577 | | |
| 20578 | | 1463 atoms, 1486 bonds, 185 residues, 1 model selected |
| 20579 | | |
| 20580 | | > select subtract #47 |
| 20581 | | |
| 20582 | | Nothing selected |
| 20583 | | |
| 20584 | | > show #38 models |
| 20585 | | |
| 20586 | | > fitmap #38 inMap #36 |
| 20587 | | |
| 20588 | | Fit molecule copy of CopA_F8WHL2.pdb (#38) to map postprocess_20231221.mrc |
| 20589 | | (#36) using 9810 atoms |
| 20590 | | average map value = 0.001845, steps = 100 |
| 20591 | | shifted from previous position = 13.2 |
| 20592 | | rotated from previous position = 6.01 degrees |
| 20593 | | atoms outside contour = 7364, contour level = 0.0030265 |
| 20594 | | |
| 20595 | | Position of copy of CopA_F8WHL2.pdb (#38) relative to postprocess_20231221.mrc |
| 20596 | | (#36) coordinates: |
| 20597 | | Matrix rotation and translation |
| 20598 | | 0.89962787 0.40507870 0.16303658 162.22050948 |
| 20599 | | -0.21016116 0.72895774 -0.65150049 244.61856024 |
| 20600 | | -0.38275575 0.55184404 0.74092251 239.08858201 |
| 20601 | | Axis 0.82559489 0.37445914 -0.42210595 |
| 20602 | | Axis point 0.00000000 -322.85722656 438.16719469 |
| 20603 | | Rotation angle (degrees) 46.78373091 |
| 20604 | | Shift along axis 124.60736685 |
| 20605 | | |
| 20606 | | |
| 20607 | | > hide #38 models |
| 20608 | | |
| 20609 | | > show #39 models |
| 20610 | | |
| 20611 | | > fitmap #39 inMap #36 |
| 20612 | | |
| 20613 | | Fit molecule copy of CopB_Q9JIF7.pdb (#39) to map postprocess_20231221.mrc |
| 20614 | | (#36) using 7501 atoms |
| 20615 | | average map value = 0.002525, steps = 152 |
| 20616 | | shifted from previous position = 8.96 |
| 20617 | | rotated from previous position = 5.97 degrees |
| 20618 | | atoms outside contour = 5351, contour level = 0.0030265 |
| 20619 | | |
| 20620 | | Position of copy of CopB_Q9JIF7.pdb (#39) relative to postprocess_20231221.mrc |
| 20621 | | (#36) coordinates: |
| 20622 | | Matrix rotation and translation |
| 20623 | | 0.06472481 -0.55243097 0.83104194 167.09562729 |
| 20624 | | -0.18885300 0.81095780 0.55378875 200.49830852 |
| 20625 | | -0.97987001 -0.19278864 -0.05183916 229.32932065 |
| 20626 | | Axis -0.37474512 0.90898871 0.18249826 |
| 20627 | | Axis point 225.52004092 0.00000000 -20.08070126 |
| 20628 | | Rotation angle (degrees) 95.05306122 |
| 20629 | | Shift along axis 161.48462904 |
| 20630 | | |
| 20631 | | |
| 20632 | | > hide #39 models |
| 20633 | | |
| 20634 | | > show #40 models |
| 20635 | | |
| 20636 | | > fitmap #40 inMap #36 |
| 20637 | | |
| 20638 | | Fit molecule copy of hArf1_P84078 (#40) to map postprocess_20231221.mrc (#36) |
| 20639 | | using 1457 atoms |
| 20640 | | average map value = 0.002588, steps = 92 |
| 20641 | | shifted from previous position = 11.4 |
| 20642 | | rotated from previous position = 6.03 degrees |
| 20643 | | atoms outside contour = 1109, contour level = 0.0030265 |
| 20644 | | |
| 20645 | | Position of copy of hArf1_P84078 (#40) relative to postprocess_20231221.mrc |
| 20646 | | (#36) coordinates: |
| 20647 | | Matrix rotation and translation |
| 20648 | | 0.15801986 0.02346451 0.98715709 126.68399998 |
| 20649 | | -0.68662820 -0.71584286 0.12692792 200.56114650 |
| 20650 | | 0.70962767 -0.69786703 -0.09700599 178.42871677 |
| 20651 | | Axis -0.73433684 0.24709181 -0.63221439 |
| 20652 | | Axis point 0.00000000 138.25600143 -15.36555268 |
| 20653 | | Rotation angle (degrees) 145.83405390 |
| 20654 | | Shift along axis -156.27691420 |
| 20655 | | |
| 20656 | | |
| 20657 | | > hide #40 models |
| 20658 | | |
| 20659 | | > show #41 models |
| 20660 | | |
| 20661 | | > fitmap #41 inMap #36 |
| 20662 | | |
| 20663 | | Fit molecule copy of hArf1_P84078 (#41) to map postprocess_20231221.mrc (#36) |
| 20664 | | using 1457 atoms |
| 20665 | | average map value = 0.003766, steps = 68 |
| 20666 | | shifted from previous position = 8.18 |
| 20667 | | rotated from previous position = 5.97 degrees |
| 20668 | | atoms outside contour = 534, contour level = 0.0030265 |
| 20669 | | |
| 20670 | | Position of copy of hArf1_P84078 (#41) relative to postprocess_20231221.mrc |
| 20671 | | (#36) coordinates: |
| 20672 | | Matrix rotation and translation |
| 20673 | | -0.84428374 -0.49456571 0.20637270 242.99409799 |
| 20674 | | -0.47730328 0.51888718 -0.70918098 195.95467590 |
| 20675 | | 0.24365245 -0.69725235 -0.67414585 220.55144469 |
| 20676 | | Axis 0.27884153 -0.87144483 0.40352361 |
| 20677 | | Axis point 151.45924998 0.00000000 157.15946705 |
| 20678 | | Rotation angle (degrees) 178.77437128 |
| 20679 | | Shift along axis -14.00912865 |
| 20680 | | |
| 20681 | | |
| 20682 | | > hide #41 models |
| 20683 | | |
| 20684 | | > show #42 models |
| 20685 | | |
| 20686 | | > fitmap #42 inMap #36 |
| 20687 | | |
| 20688 | | Fit molecule copy of CopBprime_O55029.pdb (#42) to map |
| 20689 | | postprocess_20231221.mrc (#36) using 7214 atoms |
| 20690 | | average map value = 0.00312, steps = 56 |
| 20691 | | shifted from previous position = 5.95 |
| 20692 | | rotated from previous position = 5.98 degrees |
| 20693 | | atoms outside contour = 3628, contour level = 0.0030265 |
| 20694 | | |
| 20695 | | Position of copy of CopBprime_O55029.pdb (#42) relative to |
| 20696 | | postprocess_20231221.mrc (#36) coordinates: |
| 20697 | | Matrix rotation and translation |
| 20698 | | -0.16268022 -0.17529317 -0.97098272 188.48242636 |
| 20699 | | -0.01387082 -0.98358841 0.17989284 177.42102522 |
| 20700 | | -0.98658134 0.04273334 0.15757892 238.54302847 |
| 20701 | | Axis -0.64576423 0.07344028 0.75999677 |
| 20702 | | Axis point 189.55660736 85.43076212 0.00000000 |
| 20703 | | Rotation angle (degrees) 173.90372847 |
| 20704 | | Shift along axis 72.60657227 |
| 20705 | | |
| 20706 | | |
| 20707 | | > hide #42 models |
| 20708 | | |
| 20709 | | > show #43 models |
| 20710 | | |
| 20711 | | > fitmap #43 inMap #36 |
| 20712 | | |
| 20713 | | Fit molecule copy of CopD_Q5XJY5 (#43) to map postprocess_20231221.mrc (#36) |
| 20714 | | using 1462 atoms |
| 20715 | | average map value = 0.003142, steps = 164 |
| 20716 | | shifted from previous position = 6.52 |
| 20717 | | rotated from previous position = 35 degrees |
| 20718 | | atoms outside contour = 865, contour level = 0.0030265 |
| 20719 | | |
| 20720 | | Position of copy of CopD_Q5XJY5 (#43) relative to postprocess_20231221.mrc |
| 20721 | | (#36) coordinates: |
| 20722 | | Matrix rotation and translation |
| 20723 | | -0.32491016 0.89810858 0.29636864 -149.93069389 |
| 20724 | | -0.91987837 -0.37289481 0.12154526 221.26426157 |
| 20725 | | 0.21967517 -0.23313181 0.94730797 434.62351627 |
| 20726 | | Axis -0.19131934 0.04136987 -0.98065562 |
| 20727 | | Axis point -35.80244399 196.85797289 0.00000000 |
| 20728 | | Rotation angle (degrees) 112.03967239 |
| 20729 | | Shift along axis -388.37767818 |
| 20730 | | |
| 20731 | | |
| 20732 | | > select add #43 |
| 20733 | | |
| 20734 | | 1462 atoms, 1481 bonds, 179 residues, 1 model selected |
| 20735 | | |
| 20736 | | > view matrix models |
| 20737 | | > #43,-0.97733,0.13913,-0.15956,67.371,0.080654,-0.45217,-0.88828,293.04,-0.19574,-0.88101,0.4307,624.54 |
| 20738 | | |
| 20739 | | > fitmap #43 inMap #36 |
| 20740 | | |
| 20741 | | Fit molecule copy of CopD_Q5XJY5 (#43) to map postprocess_20231221.mrc (#36) |
| 20742 | | using 1462 atoms |
| 20743 | | average map value = 0.003729, steps = 88 |
| 20744 | | shifted from previous position = 5.98 |
| 20745 | | rotated from previous position = 6.06 degrees |
| 20746 | | atoms outside contour = 772, contour level = 0.0030265 |
| 20747 | | |
| 20748 | | Position of copy of CopD_Q5XJY5 (#43) relative to postprocess_20231221.mrc |
| 20749 | | (#36) coordinates: |
| 20750 | | Matrix rotation and translation |
| 20751 | | 0.23754336 0.93136597 0.27591773 -93.05673218 |
| 20752 | | -0.88686680 0.09206350 0.45275999 106.11011123 |
| 20753 | | 0.39628329 -0.35225240 0.84786662 472.43405137 |
| 20754 | | Axis -0.40410032 -0.06042114 -0.91271694 |
| 20755 | | Axis point -102.04661937 189.92856592 0.00000000 |
| 20756 | | Rotation angle (degrees) 84.90906303 |
| 20757 | | Shift along axis -400.00560060 |
| 20758 | | |
| 20759 | | |
| 20760 | | > view matrix models |
| 20761 | | > #43,-0.99401,0.079827,-0.074614,95.992,0.032531,-0.43569,-0.89951,279.06,-0.10431,-0.89655,0.43049,631.69 |
| 20762 | | |
| 20763 | | > fitmap #43 inMap #36 |
| 20764 | | |
| 20765 | | Fit molecule copy of CopD_Q5XJY5 (#43) to map postprocess_20231221.mrc (#36) |
| 20766 | | using 1462 atoms |
| 20767 | | average map value = 0.003729, steps = 68 |
| 20768 | | shifted from previous position = 4.11 |
| 20769 | | rotated from previous position = 0.109 degrees |
| 20770 | | atoms outside contour = 773, contour level = 0.0030265 |
| 20771 | | |
| 20772 | | Position of copy of CopD_Q5XJY5 (#43) relative to postprocess_20231221.mrc |
| 20773 | | (#36) coordinates: |
| 20774 | | Matrix rotation and translation |
| 20775 | | 0.23900079 0.93130387 0.27486677 -92.97642963 |
| 20776 | | -0.88620586 0.09350435 0.45375778 105.80878398 |
| 20777 | | 0.39688514 -0.35203701 0.84767455 472.41541880 |
| 20778 | | Axis -0.40454241 -0.06125829 -0.91246527 |
| 20779 | | Axis point -102.44395100 189.84768420 0.00000000 |
| 20780 | | Rotation angle (degrees) 84.83122436 |
| 20781 | | Shift along axis -399.93141732 |
| 20782 | | |
| 20783 | | |
| 20784 | | > select subtract #43 |
| 20785 | | |
| 20786 | | Nothing selected |
| 20787 | | |
| 20788 | | > hide #43 models |
| 20789 | | |
| 20790 | | > show #!44 models |
| 20791 | | |
| 20792 | | > fitmap #44 inMap #36 |
| 20793 | | |
| 20794 | | Fit molecule copy of CopG_Q9QZE5 (#44) to map postprocess_20231221.mrc (#36) |
| 20795 | | using 6673 atoms |
| 20796 | | average map value = 0.003524, steps = 84 |
| 20797 | | shifted from previous position = 12.9 |
| 20798 | | rotated from previous position = 6.04 degrees |
| 20799 | | atoms outside contour = 4070, contour level = 0.0030265 |
| 20800 | | |
| 20801 | | Position of copy of CopG_Q9QZE5 (#44) relative to postprocess_20231221.mrc |
| 20802 | | (#36) coordinates: |
| 20803 | | Matrix rotation and translation |
| 20804 | | 0.48946347 -0.51115936 -0.70649955 223.51199949 |
| 20805 | | 0.54898811 -0.44884913 0.70508617 282.29297018 |
| 20806 | | -0.67752311 -0.73297378 0.06092515 258.74098150 |
| 20807 | | Axis -0.80480981 -0.01621666 0.59331121 |
| 20808 | | Axis point 0.00000000 245.02374166 103.83319278 |
| 20809 | | Rotation angle (degrees) 116.69430856 |
| 20810 | | Shift along axis -30.94857405 |
| 20811 | | |
| 20812 | | |
| 20813 | | > hide #!44 models |
| 20814 | | |
| 20815 | | > show #45 models |
| 20816 | | |
| 20817 | | > fitmap #45 inMap #36 |
| 20818 | | |
| 20819 | | Fit molecule copy of CopZ1_P61924.pdb (#45) to map postprocess_20231221.mrc |
| 20820 | | (#36) using 1420 atoms |
| 20821 | | average map value = 0.003341, steps = 140 |
| 20822 | | shifted from previous position = 7.55 |
| 20823 | | rotated from previous position = 28.6 degrees |
| 20824 | | atoms outside contour = 848, contour level = 0.0030265 |
| 20825 | | |
| 20826 | | Position of copy of CopZ1_P61924.pdb (#45) relative to |
| 20827 | | postprocess_20231221.mrc (#36) coordinates: |
| 20828 | | Matrix rotation and translation |
| 20829 | | -0.79241779 -0.25904378 -0.55224123 225.83639020 |
| 20830 | | -0.24122239 -0.69846324 0.67376618 252.43001963 |
| 20831 | | -0.56025513 0.66711726 0.49098754 221.81404820 |
| 20832 | | Axis -0.32212885 0.38825989 0.86341604 |
| 20833 | | Axis point 153.79328451 77.22601021 0.00000000 |
| 20834 | | Rotation angle (degrees) 179.40868121 |
| 20835 | | Shift along axis 216.77784350 |
| 20836 | | |
| 20837 | | |
| 20838 | | > hide #45 models |
| 20839 | | |
| 20840 | | > show #46 models |
| 20841 | | |
| 20842 | | > fitmap #46 inMap #36 |
| 20843 | | |
| 20844 | | Fit molecule copy of Golph3_ Q9CRA5.pdb (#46) to map postprocess_20231221.mrc |
| 20845 | | (#36) using 2367 atoms |
| 20846 | | average map value = 0.002844, steps = 96 |
| 20847 | | shifted from previous position = 15.2 |
| 20848 | | rotated from previous position = 22.1 degrees |
| 20849 | | atoms outside contour = 1512, contour level = 0.0030265 |
| 20850 | | |
| 20851 | | Position of copy of Golph3_ Q9CRA5.pdb (#46) relative to |
| 20852 | | postprocess_20231221.mrc (#36) coordinates: |
| 20853 | | Matrix rotation and translation |
| 20854 | | 0.88215741 -0.29722968 0.36531195 188.44731661 |
| 20855 | | -0.47090905 -0.56749136 0.67542448 245.58008344 |
| 20856 | | 0.00655517 -0.76785941 -0.64058485 188.06587507 |
| 20857 | | Axis -0.96391743 0.23960076 -0.11599421 |
| 20858 | | Axis point 0.00000000 186.21158181 17.25382099 |
| 20859 | | Rotation angle (degrees) 131.52596597 |
| 20860 | | Shift along axis -144.62103243 |
| 20861 | | |
| 20862 | | |
| 20863 | | > select add #46 |
| 20864 | | |
| 20865 | | 2367 atoms, 2398 bonds, 298 residues, 1 model selected |
| 20866 | | |
| 20867 | | > view matrix models |
| 20868 | | > #46,-0.82505,0.028912,0.56432,291.15,-0.23659,0.88926,-0.39146,195.77,-0.51315,-0.45648,-0.72685,263.31 |
| 20869 | | |
| 20870 | | > fitmap #46 inMap #36 |
| 20871 | | |
| 20872 | | Fit molecule copy of Golph3_ Q9CRA5.pdb (#46) to map postprocess_20231221.mrc |
| 20873 | | (#36) using 2367 atoms |
| 20874 | | average map value = 0.0031, steps = 56 |
| 20875 | | shifted from previous position = 6.03 |
| 20876 | | rotated from previous position = 6.01 degrees |
| 20877 | | atoms outside contour = 1160, contour level = 0.0030265 |
| 20878 | | |
| 20879 | | Position of copy of Golph3_ Q9CRA5.pdb (#46) relative to |
| 20880 | | postprocess_20231221.mrc (#36) coordinates: |
| 20881 | | Matrix rotation and translation |
| 20882 | | 0.66096817 -0.23564404 0.71245559 198.02898892 |
| 20883 | | -0.68872881 -0.56745747 0.45127003 233.22010661 |
| 20884 | | 0.29794916 -0.78896381 -0.53736617 191.32937752 |
| 20885 | | Axis -0.89616357 0.29951252 -0.32738832 |
| 20886 | | Axis point 0.00000000 180.10300621 -4.23076087 |
| 20887 | | Rotation angle (degrees) 136.21386820 |
| 20888 | | Shift along axis -170.25302671 |
| 20889 | | |
| 20890 | | |
| 20891 | | > show #45 models |
| 20892 | | |
| 20893 | | > select subtract #46 |
| 20894 | | |
| 20895 | | Nothing selected |
| 20896 | | |
| 20897 | | > select add #45 |
| 20898 | | |
| 20899 | | 1420 atoms, 1441 bonds, 177 residues, 1 model selected |
| 20900 | | |
| 20901 | | > view matrix models |
| 20902 | | > #45,0.21012,-0.87378,0.43859,277.7,0.96106,0.10223,-0.25675,165.54,0.1795,0.47545,0.86123,257.13 |
| 20903 | | |
| 20904 | | > fitmap #45 inMap #36 |
| 20905 | | |
| 20906 | | Fit molecule copy of CopZ1_P61924.pdb (#45) to map postprocess_20231221.mrc |
| 20907 | | (#36) using 1420 atoms |
| 20908 | | average map value = 0.003252, steps = 76 |
| 20909 | | shifted from previous position = 3.55 |
| 20910 | | rotated from previous position = 5.44 degrees |
| 20911 | | atoms outside contour = 813, contour level = 0.0030265 |
| 20912 | | |
| 20913 | | Position of copy of CopZ1_P61924.pdb (#45) relative to |
| 20914 | | postprocess_20231221.mrc (#36) coordinates: |
| 20915 | | Matrix rotation and translation |
| 20916 | | -0.74307979 -0.25499030 -0.61871834 231.17592815 |
| 20917 | | -0.25871991 -0.74320531 0.61701692 238.13464030 |
| 20918 | | -0.61716809 0.61856756 0.48628977 211.26405643 |
| 20919 | | Axis 0.35841371 -0.35832445 -0.86205754 |
| 20920 | | Axis point 159.61400354 74.97358294 0.00000000 |
| 20921 | | Rotation angle (degrees) 179.87605755 |
| 20922 | | Shift along axis -184.59461497 |
| 20923 | | |
| 20924 | | |
| 20925 | | > select subtract #45 |
| 20926 | | |
| 20927 | | Nothing selected |
| 20928 | | |
| 20929 | | > show #47 models |
| 20930 | | |
| 20931 | | > fitmap #47 inMap #36 |
| 20932 | | |
| 20933 | | Fit molecule copy of CopZ2_Q9CTG7.pdb (#47) to map postprocess_20231221.mrc |
| 20934 | | (#36) using 1463 atoms |
| 20935 | | average map value = 0.003943, steps = 84 |
| 20936 | | shifted from previous position = 12.6 |
| 20937 | | rotated from previous position = 6.02 degrees |
| 20938 | | atoms outside contour = 660, contour level = 0.0030265 |
| 20939 | | |
| 20940 | | Position of copy of CopZ2_Q9CTG7.pdb (#47) relative to |
| 20941 | | postprocess_20231221.mrc (#36) coordinates: |
| 20942 | | Matrix rotation and translation |
| 20943 | | -0.81856850 0.29541049 -0.49262388 229.56463346 |
| 20944 | | 0.42692248 0.88665736 -0.17769625 242.04056520 |
| 20945 | | 0.38429525 -0.35576876 -0.85190715 217.27719994 |
| 20946 | | Axis -0.19688936 -0.96958283 0.14540881 |
| 20947 | | Axis point 58.97509138 0.00000000 149.05910006 |
| 20948 | | Rotation angle (degrees) 153.11413728 |
| 20949 | | Shift along axis -248.28319028 |
| 20950 | | |
| 20951 | | |
| 20952 | | > hide #!36 models |
| 20953 | | |
| 20954 | | > show #!36 models |
| 20955 | | |
| 20956 | | > select add #47 |
| 20957 | | |
| 20958 | | 1463 atoms, 1486 bonds, 185 residues, 1 model selected |
| 20959 | | |
| 20960 | | > view matrix models |
| 20961 | | > #47,0.32785,0.87698,0.35131,275.82,0.096539,-0.40101,0.91097,160.42,0.93978,-0.26475,-0.21614,255.31 |
| 20962 | | |
| 20963 | | > fitmap #47 inMap #36 |
| 20964 | | |
| 20965 | | Fit molecule copy of CopZ2_Q9CTG7.pdb (#47) to map postprocess_20231221.mrc |
| 20966 | | (#36) using 1463 atoms |
| 20967 | | average map value = 0.003943, steps = 72 |
| 20968 | | shifted from previous position = 5.7 |
| 20969 | | rotated from previous position = 0.0285 degrees |
| 20970 | | atoms outside contour = 662, contour level = 0.0030265 |
| 20971 | | |
| 20972 | | Position of copy of CopZ2_Q9CTG7.pdb (#47) relative to |
| 20973 | | postprocess_20231221.mrc (#36) coordinates: |
| 20974 | | Matrix rotation and translation |
| 20975 | | -0.81884961 0.29515291 -0.49231100 229.57867805 |
| 20976 | | 0.42656715 0.88679941 -0.17784067 242.04679876 |
| 20977 | | 0.38409091 -0.35562846 -0.85205787 217.26175350 |
| 20978 | | Axis -0.19669890 -0.96962391 0.14539264 |
| 20979 | | Axis point 59.03249218 0.00000000 149.04035077 |
| 20980 | | Rotation angle (degrees) 153.13250017 |
| 20981 | | Shift along axis -248.26397584 |
| 20982 | | |
| 20983 | | |
| 20984 | | > view matrix models |
| 20985 | | > #47,0.3277,0.87708,0.3512,275.64,0.097012,-0.401,0.91093,162.99,0.93979,-0.26444,-0.21649,257.75 |
| 20986 | | |
| 20987 | | > view matrix models |
| 20988 | | > #47,0.3277,0.87708,0.3512,275.87,0.097012,-0.401,0.91093,160.24,0.93979,-0.26444,-0.21649,257.67 |
| 20989 | | |
| 20990 | | > ui mousemode right "rotate selected models" |
| 20991 | | |
| 20992 | | > view matrix models |
| 20993 | | > #47,0.099911,0.92585,0.36445,276.02,0.092207,-0.37333,0.92311,159.99,0.99071,-0.058624,-0.12267,255.51 |
| 20994 | | |
| 20995 | | > fitmap #47 inMap #36 |
| 20996 | | |
| 20997 | | Fit molecule copy of CopZ2_Q9CTG7.pdb (#47) to map postprocess_20231221.mrc |
| 20998 | | (#36) using 1463 atoms |
| 20999 | | average map value = 0.003943, steps = 72 |
| 21000 | | shifted from previous position = 4.67 |
| 21001 | | rotated from previous position = 13.4 degrees |
| 21002 | | atoms outside contour = 662, contour level = 0.0030265 |
| 21003 | | |
| 21004 | | Position of copy of CopZ2_Q9CTG7.pdb (#47) relative to |
| 21005 | | postprocess_20231221.mrc (#36) coordinates: |
| 21006 | | Matrix rotation and translation |
| 21007 | | -0.81870415 0.29453144 -0.49292472 229.57598062 |
| 21008 | | 0.42644716 0.88673453 -0.17845091 242.04233282 |
| 21009 | | 0.38453397 -0.35630484 -0.85157532 217.27081545 |
| 21010 | | Axis -0.19653058 -0.96960163 0.14576834 |
| 21011 | | Axis point 58.99807446 0.00000000 149.13106012 |
| 21012 | | Rotation angle (degrees) 153.09682552 |
| 21013 | | Shift along axis -248.13213561 |
| 21014 | | |
| 21015 | | |
| 21016 | | > hide #!36 models |
| 21017 | | |
| 21018 | | > view matrix models |
| 21019 | | > #47,0.22168,0.97072,0.092523,273.06,0.86044,-0.15008,-0.48696,143.03,-0.45881,0.18756,-0.86851,254.23 |
| 21020 | | |
| 21021 | | > view matrix models |
| 21022 | | > #47,0.3029,0.90974,0.28394,275.09,0.61891,-0.41434,0.66729,156.13,0.72471,-0.026388,-0.68855,254.8 |
| 21023 | | |
| 21024 | | > fitmap #47 inMap #36 |
| 21025 | | |
| 21026 | | Fit molecule copy of CopZ2_Q9CTG7.pdb (#47) to map postprocess_20231221.mrc |
| 21027 | | (#36) using 1463 atoms |
| 21028 | | average map value = 0.003336, steps = 64 |
| 21029 | | shifted from previous position = 5.95 |
| 21030 | | rotated from previous position = 10.5 degrees |
| 21031 | | atoms outside contour = 802, contour level = 0.0030265 |
| 21032 | | |
| 21033 | | Position of copy of CopZ2_Q9CTG7.pdb (#47) relative to |
| 21034 | | postprocess_20231221.mrc (#36) coordinates: |
| 21035 | | Matrix rotation and translation |
| 21036 | | -0.95758064 0.24644955 0.14933843 234.39384468 |
| 21037 | | 0.20215165 0.94383530 -0.26136118 238.42578689 |
| 21038 | | -0.20536323 -0.22008539 -0.95361858 220.01146182 |
| 21039 | | Axis 0.11470840 0.98574167 -0.12310707 |
| 21040 | | Axis point 114.77598687 0.00000000 115.34990095 |
| 21041 | | Rotation angle (degrees) 169.63512521 |
| 21042 | | Shift along axis 234.82821042 |
| 21043 | | |
| 21044 | | |
| 21045 | | > view matrix models |
| 21046 | | > #47,-0.70547,-0.10535,-0.70087,280.07,-0.705,0.0028904,0.7092,155.05,-0.072687,0.99443,-0.076309,250.98 |
| 21047 | | |
| 21048 | | > view matrix models |
| 21049 | | > #47,-0.80485,-0.090919,-0.58647,281.06,-0.57553,-0.12162,0.80869,157.07,-0.14485,0.9884,0.045562,252.21 |
| 21050 | | |
| 21051 | | > ui mousemode right "translate selected models" |
| 21052 | | |
| 21053 | | > view matrix models |
| 21054 | | > #47,-0.80485,-0.090919,-0.58647,273.14,-0.57553,-0.12162,0.80869,155.64,-0.14485,0.9884,0.045562,258.19 |
| 21055 | | |
| 21056 | | > fitmap #47 inMap #36 |
| 21057 | | |
| 21058 | | Fit molecule copy of CopZ2_Q9CTG7.pdb (#47) to map postprocess_20231221.mrc |
| 21059 | | (#36) using 1463 atoms |
| 21060 | | average map value = 0.003447, steps = 132 |
| 21061 | | shifted from previous position = 4.97 |
| 21062 | | rotated from previous position = 22.8 degrees |
| 21063 | | atoms outside contour = 763, contour level = 0.0030265 |
| 21064 | | |
| 21065 | | Position of copy of CopZ2_Q9CTG7.pdb (#47) relative to |
| 21066 | | postprocess_20231221.mrc (#36) coordinates: |
| 21067 | | Matrix rotation and translation |
| 21068 | | 0.30588544 -0.72116594 -0.62157365 234.08714943 |
| 21069 | | -0.47200092 0.45211849 -0.75683817 239.69779730 |
| 21070 | | 0.82683085 0.52488911 -0.20209452 215.51541985 |
| 21071 | | Axis 0.65727153 -0.74274384 0.12777217 |
| 21072 | | Axis point 107.57558101 0.00000000 252.91913519 |
| 21073 | | Rotation angle (degrees) 102.82919125 |
| 21074 | | Shift along axis 3.36162952 |
| 21075 | | |
| 21076 | | |
| 21077 | | > view matrix models |
| 21078 | | > #47,-0.86066,0.2634,-0.43576,315.58,-0.46594,-0.062242,0.88263,179.49,0.20536,0.96268,0.1763,210.55 |
| 21079 | | |
| 21080 | | > view matrix models |
| 21081 | | > #47,-0.86066,0.2634,-0.43576,318.6,-0.46594,-0.062242,0.88263,152.04,0.20536,0.96268,0.1763,201.33 |
| 21082 | | |
| 21083 | | > ui mousemode right "rotate selected models" |
| 21084 | | |
| 21085 | | > view matrix models |
| 21086 | | > #47,-0.70672,0.10683,-0.69938,318.18,-0.6883,-0.3325,0.64473,154.47,-0.16367,0.93703,0.30851,203.82 |
| 21087 | | |
| 21088 | | > view matrix models |
| 21089 | | > #47,-0.65261,-0.74609,0.13214,335.68,0.74868,-0.66178,-0.039003,149.16,0.11655,0.073477,0.99046,219.62 |
| 21090 | | |
| 21091 | | > view matrix models |
| 21092 | | > #47,-0.97051,-0.18493,-0.15461,327.03,0.2146,-0.37077,-0.90359,140.31,0.10978,-0.91013,0.39952,228.12 |
| 21093 | | |
| 21094 | | > view matrix models |
| 21095 | | > #47,-0.94215,-0.083255,-0.32468,324.29,0.33323,-0.3371,-0.88052,139.67,-0.036144,-0.93778,0.34535,228.51 |
| 21096 | | |
| 21097 | | > ui mousemode right "translate selected models" |
| 21098 | | |
| 21099 | | > view matrix models |
| 21100 | | > #47,-0.94215,-0.083255,-0.32468,291.69,0.33323,-0.3371,-0.88052,148.12,-0.036144,-0.93778,0.34535,275.46 |
| 21101 | | |
| 21102 | | > fitmap #47 inMap #36 |
| 21103 | | |
| 21104 | | Fit molecule copy of CopZ2_Q9CTG7.pdb (#47) to map postprocess_20231221.mrc |
| 21105 | | (#36) using 1463 atoms |
| 21106 | | average map value = 0.003524, steps = 296 |
| 21107 | | shifted from previous position = 6.93 |
| 21108 | | rotated from previous position = 36.8 degrees |
| 21109 | | atoms outside contour = 843, contour level = 0.0030265 |
| 21110 | | |
| 21111 | | Position of copy of CopZ2_Q9CTG7.pdb (#47) relative to |
| 21112 | | postprocess_20231221.mrc (#36) coordinates: |
| 21113 | | Matrix rotation and translation |
| 21114 | | -0.23600017 0.84960641 0.47167032 222.05629774 |
| 21115 | | -0.91651317 -0.03328767 -0.39861707 257.82571853 |
| 21116 | | -0.32296680 -0.52636575 0.78653135 224.18820747 |
| 21117 | | Axis -0.06582058 0.40942479 -0.90996648 |
| 21118 | | Axis point 233.55009631 87.16188170 0.00000000 |
| 21119 | | Rotation angle (degrees) 103.96789961 |
| 21120 | | Shift along axis -113.05938715 |
| 21121 | | |
| 21122 | | |
| 21123 | | > ui mousemode right "rotate selected models" |
| 21124 | | |
| 21125 | | > view matrix models |
| 21126 | | > #47,-0.69303,-0.58037,0.42765,305.93,-0.11104,-0.5002,-0.85876,156.99,0.71231,-0.64263,0.28221,268.54 |
| 21127 | | |
| 21128 | | > view matrix models |
| 21129 | | > #47,-0.74623,-0.37782,0.54808,304.34,-0.19131,-0.66689,-0.72018,160.51,0.63761,-0.64227,0.42537,269.86 |
| 21130 | | |
| 21131 | | > view matrix models |
| 21132 | | > #47,-0.79925,-0.30357,0.5187,303.3,-0.20727,-0.67088,-0.71201,160.67,0.56413,-0.67658,0.47328,270.91 |
| 21133 | | |
| 21134 | | > ui mousemode right "translate selected models" |
| 21135 | | |
| 21136 | | > view matrix models |
| 21137 | | > #47,-0.79925,-0.30357,0.5187,302.6,-0.20727,-0.67088,-0.71201,165.43,0.56413,-0.67658,0.47328,255.98 |
| 21138 | | |
| 21139 | | > view matrix models |
| 21140 | | > #47,-0.79925,-0.30357,0.5187,280.85,-0.20727,-0.67088,-0.71201,177.97,0.56413,-0.67658,0.47328,238.93 |
| 21141 | | |
| 21142 | | > view matrix models |
| 21143 | | > #47,-0.79925,-0.30357,0.5187,268.48,-0.20727,-0.67088,-0.71201,168.94,0.56413,-0.67658,0.47328,253.68 |
| 21144 | | |
| 21145 | | > ui mousemode right "rotate selected models" |
| 21146 | | |
| 21147 | | > view matrix models |
| 21148 | | > #47,-0.95716,0.042458,-0.28642,258.2,0.2287,-0.49584,-0.83776,164.32,-0.17759,-0.86738,0.46488,258.42 |
| 21149 | | |
| 21150 | | > ui mousemode right "translate selected models" |
| 21151 | | |
| 21152 | | > view matrix models |
| 21153 | | > #47,-0.95716,0.042458,-0.28642,269.87,0.2287,-0.49584,-0.83776,164.07,-0.17759,-0.86738,0.46488,266.05 |
| 21154 | | |
| 21155 | | > fitmap #47 inMap #36 |
| 21156 | | |
| 21157 | | Fit molecule copy of CopZ2_Q9CTG7.pdb (#47) to map postprocess_20231221.mrc |
| 21158 | | (#36) using 1463 atoms |
| 21159 | | average map value = 0.003418, steps = 200 |
| 21160 | | shifted from previous position = 5.22 |
| 21161 | | rotated from previous position = 24.6 degrees |
| 21162 | | atoms outside contour = 772, contour level = 0.0030265 |
| 21163 | | |
| 21164 | | Position of copy of CopZ2_Q9CTG7.pdb (#47) relative to |
| 21165 | | postprocess_20231221.mrc (#36) coordinates: |
| 21166 | | Matrix rotation and translation |
| 21167 | | 0.26044120 0.94244973 0.20966382 226.85831724 |
| 21168 | | -0.94833218 0.29046575 -0.12765478 239.40983299 |
| 21169 | | -0.18120836 -0.16558438 0.96940465 217.26827378 |
| 21170 | | Axis -0.01964111 0.20240559 -0.97910480 |
| 21171 | | Axis point 293.57103397 -6.82403053 0.00000000 |
| 21172 | | Rotation angle (degrees) 74.92069348 |
| 21173 | | Shift along axis -168.72627056 |
| 21174 | | |
| 21175 | | |
| 21176 | | > ui mousemode right "rotate selected models" |
| 21177 | | |
| 21178 | | > view matrix models |
| 21179 | | > #47,-0.77651,-0.35256,-0.52223,281.7,0.59896,-0.15569,-0.7855,154.26,0.19563,-0.92275,0.33206,261.79 |
| 21180 | | |
| 21181 | | > view matrix models |
| 21182 | | > #47,-0.87705,-0.38104,-0.29257,284.15,0.40177,-0.24788,-0.88155,155.34,0.26338,-0.89071,0.37049,261.45 |
| 21183 | | |
| 21184 | | > ui mousemode right "translate selected models" |
| 21185 | | |
| 21186 | | > view matrix models |
| 21187 | | > #47,-0.87705,-0.38104,-0.29257,274.89,0.40177,-0.24788,-0.88155,163.35,0.26338,-0.89071,0.37049,254.91 |
| 21188 | | |
| 21189 | | > fitmap #47 inMap #36 |
| 21190 | | |
| 21191 | | Fit molecule copy of CopZ2_Q9CTG7.pdb (#47) to map postprocess_20231221.mrc |
| 21192 | | (#36) using 1463 atoms |
| 21193 | | average map value = 0.003586, steps = 132 |
| 21194 | | shifted from previous position = 4.79 |
| 21195 | | rotated from previous position = 8.83 degrees |
| 21196 | | atoms outside contour = 722, contour level = 0.0030265 |
| 21197 | | |
| 21198 | | Position of copy of CopZ2_Q9CTG7.pdb (#47) relative to |
| 21199 | | postprocess_20231221.mrc (#36) coordinates: |
| 21200 | | Matrix rotation and translation |
| 21201 | | -0.33536384 0.83016103 0.44538049 228.49116961 |
| 21202 | | -0.82065670 -0.48959996 0.29464296 240.71463678 |
| 21203 | | 0.46265938 -0.26669189 0.84547133 214.80312053 |
| 21204 | | Axis -0.32191614 -0.00990915 -0.94671633 |
| 21205 | | Axis point 151.27276822 76.39905039 0.00000000 |
| 21206 | | Rotation angle (degrees) 119.32390386 |
| 21207 | | Shift along axis -279.29789433 |
| 21208 | | |
| 21209 | | |
| 21210 | | > ui mousemode right "rotate selected models" |
| 21211 | | |
| 21212 | | > view matrix models |
| 21213 | | > #47,-0.91252,0.0016876,-0.40902,269.21,0.35726,-0.48365,-0.79903,167.66,-0.19917,-0.87526,0.44074,262.81 |
| 21214 | | |
| 21215 | | > view matrix models |
| 21216 | | > #47,-0.94788,-0.16031,-0.27537,272.49,0.31847,-0.44938,-0.83465,167.06,0.010056,-0.87884,0.47701,262.49 |
| 21217 | | |
| 21218 | | > ui mousemode right "translate selected models" |
| 21219 | | |
| 21220 | | > view matrix models |
| 21221 | | > #47,-0.94788,-0.16031,-0.27537,271.44,0.31847,-0.44938,-0.83465,161.58,0.010056,-0.87884,0.47701,260.2 |
| 21222 | | |
| 21223 | | > view matrix models |
| 21224 | | > #47,-0.94788,-0.16031,-0.27537,275.35,0.31847,-0.44938,-0.83465,161.71,0.010056,-0.87884,0.47701,257.04 |
| 21225 | | |
| 21226 | | > fitmap #47 inMap #36 |
| 21227 | | |
| 21228 | | Fit molecule copy of CopZ2_Q9CTG7.pdb (#47) to map postprocess_20231221.mrc |
| 21229 | | (#36) using 1463 atoms |
| 21230 | | average map value = 0.003554, steps = 144 |
| 21231 | | shifted from previous position = 2.44 |
| 21232 | | rotated from previous position = 8.11 degrees |
| 21233 | | atoms outside contour = 759, contour level = 0.0030265 |
| 21234 | | |
| 21235 | | Position of copy of CopZ2_Q9CTG7.pdb (#47) relative to |
| 21236 | | postprocess_20231221.mrc (#36) coordinates: |
| 21237 | | Matrix rotation and translation |
| 21238 | | 0.02967744 0.93785449 0.34575747 230.60267565 |
| 21239 | | -0.97181536 -0.05386033 0.22950813 237.60977330 |
| 21240 | | 0.23386785 -0.34282363 0.90982296 212.71121886 |
| 21241 | | Axis -0.28663485 0.05603649 -0.95639969 |
| 21242 | | Axis point 207.82482217 47.44475019 0.00000000 |
| 21243 | | Rotation angle (degrees) 93.27795871 |
| 21244 | | Shift along axis -256.22088917 |
| 21245 | | |
| 21246 | | |
| 21247 | | > fitmap #47 inMap #36 |
| 21248 | | |
| 21249 | | Fit molecule copy of CopZ2_Q9CTG7.pdb (#47) to map postprocess_20231221.mrc |
| 21250 | | (#36) using 1463 atoms |
| 21251 | | average map value = 0.003554, steps = 64 |
| 21252 | | shifted from previous position = 0.0428 |
| 21253 | | rotated from previous position = 0.0858 degrees |
| 21254 | | atoms outside contour = 757, contour level = 0.0030265 |
| 21255 | | |
| 21256 | | Position of copy of CopZ2_Q9CTG7.pdb (#47) relative to |
| 21257 | | postprocess_20231221.mrc (#36) coordinates: |
| 21258 | | Matrix rotation and translation |
| 21259 | | 0.02972147 0.93767602 0.34623739 230.58929566 |
| 21260 | | -0.97214566 -0.05344952 0.22820164 237.64468398 |
| 21261 | | 0.23248543 -0.34337567 0.90996906 212.69033249 |
| 21262 | | Axis -0.28625208 0.05696821 -0.95645929 |
| 21263 | | Axis point 208.02160818 47.45879110 0.00000000 |
| 21264 | | Rotation angle (degrees) 93.26071473 |
| 21265 | | Shift along axis -255.89811636 |
| 21266 | | |
| 21267 | | |
| 21268 | | > fitmap #45 inMap #36 |
| 21269 | | |
| 21270 | | Fit molecule copy of CopZ1_P61924.pdb (#45) to map postprocess_20231221.mrc |
| 21271 | | (#36) using 1420 atoms |
| 21272 | | average map value = 0.003251, steps = 48 |
| 21273 | | shifted from previous position = 0.0293 |
| 21274 | | rotated from previous position = 0.012 degrees |
| 21275 | | atoms outside contour = 814, contour level = 0.0030265 |
| 21276 | | |
| 21277 | | Position of copy of CopZ1_P61924.pdb (#45) relative to |
| 21278 | | postprocess_20231221.mrc (#36) coordinates: |
| 21279 | | Matrix rotation and translation |
| 21280 | | -0.74308490 -0.25515086 -0.61864601 231.19634471 |
| 21281 | | -0.25852657 -0.74323382 0.61706361 238.12726488 |
| 21282 | | -0.61724295 0.61846709 0.48632255 211.28277057 |
| 21283 | | Axis 0.35841059 -0.35830483 -0.86206699 |
| 21284 | | Axis point 159.61699509 74.98658362 0.00000000 |
| 21285 | | Rotation angle (degrees) 179.88781970 |
| 21286 | | Shift along axis -184.59883245 |
| 21287 | | |
| 21288 | | |
| 21289 | | > fitmap #45 inMap #36 |
| 21290 | | |
| 21291 | | Fit molecule copy of CopZ1_P61924.pdb (#45) to map postprocess_20231221.mrc |
| 21292 | | (#36) using 1420 atoms |
| 21293 | | average map value = 0.00325, steps = 44 |
| 21294 | | shifted from previous position = 0.0394 |
| 21295 | | rotated from previous position = 0.073 degrees |
| 21296 | | atoms outside contour = 812, contour level = 0.0030265 |
| 21297 | | |
| 21298 | | Position of copy of CopZ1_P61924.pdb (#45) relative to |
| 21299 | | postprocess_20231221.mrc (#36) coordinates: |
| 21300 | | Matrix rotation and translation |
| 21301 | | -0.74235412 -0.25550993 -0.61937472 231.20075895 |
| 21302 | | -0.25920664 -0.74292440 0.61715092 238.15986692 |
| 21303 | | -0.61783677 0.61869058 0.48528312 211.26007469 |
| 21304 | | Axis 0.35891956 -0.35852041 -0.86176555 |
| 21305 | | Axis point 159.70161943 74.94960414 0.00000000 |
| 21306 | | Rotation angle (degrees) 179.87710908 |
| 21307 | | Shift along axis -184.45935437 |
| 21308 | | |
| 21309 | | |
| 21310 | | > select subtract #47 |
| 21311 | | |
| 21312 | | Nothing selected |
| 21313 | | |
| 21314 | | > hide #47 models |
| 21315 | | |
| 21316 | | > hide #46 models |
| 21317 | | |
| 21318 | | > hide #45 models |
| 21319 | | |
| 21320 | | > show #!1 models |
| 21321 | | |
| 21322 | | > show #!16 models |
| 21323 | | |
| 21324 | | > show #!24 models |
| 21325 | | |
| 21326 | | > show #!36 models |
| 21327 | | |
| 21328 | | > show #38 models |
| 21329 | | |
| 21330 | | > show #39 models |
| 21331 | | |
| 21332 | | > show #40 models |
| 21333 | | |
| 21334 | | > show #41 models |
| 21335 | | |
| 21336 | | > show #42 models |
| 21337 | | |
| 21338 | | > show #43 models |
| 21339 | | |
| 21340 | | > show #!44 models |
| 21341 | | |
| 21342 | | > show #45 models |
| 21343 | | |
| 21344 | | > show #46 models |
| 21345 | | |
| 21346 | | > show #47 models |
| 21347 | | |
| 21348 | | > show #35 models |
| 21349 | | |
| 21350 | | > show #34 models |
| 21351 | | |
| 21352 | | > show #33 models |
| 21353 | | |
| 21354 | | > show #!32 models |
| 21355 | | |
| 21356 | | > show #31 models |
| 21357 | | |
| 21358 | | > show #30 models |
| 21359 | | |
| 21360 | | > show #29 models |
| 21361 | | |
| 21362 | | > show #28 models |
| 21363 | | |
| 21364 | | > show #27 models |
| 21365 | | |
| 21366 | | > show #26 models |
| 21367 | | |
| 21368 | | > show #12 models |
| 21369 | | |
| 21370 | | > show #11 models |
| 21371 | | |
| 21372 | | > show #10 models |
| 21373 | | |
| 21374 | | > show #!9 models |
| 21375 | | |
| 21376 | | > show #8 models |
| 21377 | | |
| 21378 | | > show #7 models |
| 21379 | | |
| 21380 | | > show #6 models |
| 21381 | | |
| 21382 | | > show #5 models |
| 21383 | | |
| 21384 | | > show #4 models |
| 21385 | | |
| 21386 | | > show #3 models |
| 21387 | | |
| 21388 | | > hide #!1 models |
| 21389 | | |
| 21390 | | > hide #!16 models |
| 21391 | | |
| 21392 | | > show #!16 models |
| 21393 | | |
| 21394 | | > hide #!24 models |
| 21395 | | |
| 21396 | | > hide #!36 models |
| 21397 | | |
| 21398 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 21399 | | > dataset/Chimera sessions/20240125_linkage_2_fitting_final.cxs" |
| 21400 | | |
| 21401 | | > hide #40 models |
| 21402 | | |
| 21403 | | > hide #39 models |
| 21404 | | |
| 21405 | | > hide #38 models |
| 21406 | | |
| 21407 | | > hide #41 models |
| 21408 | | |
| 21409 | | > hide #42 models |
| 21410 | | |
| 21411 | | > hide #43 models |
| 21412 | | |
| 21413 | | > hide #!44 models |
| 21414 | | |
| 21415 | | > hide #45 models |
| 21416 | | |
| 21417 | | > hide #46 models |
| 21418 | | |
| 21419 | | > hide #47 models |
| 21420 | | |
| 21421 | | > hide #35 models |
| 21422 | | |
| 21423 | | > hide #34 models |
| 21424 | | |
| 21425 | | > hide #33 models |
| 21426 | | |
| 21427 | | > hide #!32 models |
| 21428 | | |
| 21429 | | > hide #31 models |
| 21430 | | |
| 21431 | | > hide #30 models |
| 21432 | | |
| 21433 | | > hide #29 models |
| 21434 | | |
| 21435 | | > hide #28 models |
| 21436 | | |
| 21437 | | > hide #27 models |
| 21438 | | |
| 21439 | | > hide #26 models |
| 21440 | | |
| 21441 | | > hide #12 models |
| 21442 | | |
| 21443 | | > hide #11 models |
| 21444 | | |
| 21445 | | > hide #10 models |
| 21446 | | |
| 21447 | | > hide #!9 models |
| 21448 | | |
| 21449 | | > hide #8 models |
| 21450 | | |
| 21451 | | > hide #7 models |
| 21452 | | |
| 21453 | | > hide #6 models |
| 21454 | | |
| 21455 | | > hide #5 models |
| 21456 | | |
| 21457 | | > hide #4 models |
| 21458 | | |
| 21459 | | > hide #3 models |
| 21460 | | |
| 21461 | | > hide #!16 models |
| 21462 | | |
| 21463 | | > show #!19 models |
| 21464 | | |
| 21465 | | > show #!1 models |
| 21466 | | |
| 21467 | | > volume #19 level 0.5397 |
| 21468 | | |
| 21469 | | > show #4 models |
| 21470 | | |
| 21471 | | > hide #4 models |
| 21472 | | |
| 21473 | | > show #7 models |
| 21474 | | |
| 21475 | | > hide #7 models |
| 21476 | | |
| 21477 | | > show #7 models |
| 21478 | | |
| 21479 | | > show #!14 models |
| 21480 | | |
| 21481 | | > hide #!14 models |
| 21482 | | |
| 21483 | | > show #!14 models |
| 21484 | | |
| 21485 | | > hide #!14 models |
| 21486 | | |
| 21487 | | > show #!20 models |
| 21488 | | |
| 21489 | | > hide #!20 models |
| 21490 | | |
| 21491 | | > show #!20 models |
| 21492 | | |
| 21493 | | > hide #!20 models |
| 21494 | | |
| 21495 | | > show #!20 models |
| 21496 | | |
| 21497 | | > select add #20 |
| 21498 | | |
| 21499 | | 2 models selected |
| 21500 | | |
| 21501 | | > volume #20 level 1.011 |
| 21502 | | |
| 21503 | | > view matrix models #20,1,0,0,312.34,0,1,0,273.87,0,0,1,241.7 |
| 21504 | | |
| 21505 | | > view matrix models #20,1,0,0,332.44,0,1,0,260.55,0,0,1,299.91 |
| 21506 | | |
| 21507 | | > ui mousemode right "rotate selected models" |
| 21508 | | |
| 21509 | | > view matrix models |
| 21510 | | > #20,0.95666,0.21298,-0.19859,329.18,-0.24071,0.96215,-0.12773,257.74,0.16387,0.17,0.97172,300.02 |
| 21511 | | |
| 21512 | | > ui mousemode right "translate selected models" |
| 21513 | | |
| 21514 | | > view matrix models |
| 21515 | | > #20,0.95666,0.21298,-0.19859,361.78,-0.24071,0.96215,-0.12773,267.27,0.16387,0.17,0.97172,311.62 |
| 21516 | | |
| 21517 | | > view matrix models |
| 21518 | | > #20,0.95666,0.21298,-0.19859,333.5,-0.24071,0.96215,-0.12773,213.9,0.16387,0.17,0.97172,295.17 |
| 21519 | | |
| 21520 | | > view matrix models |
| 21521 | | > #20,0.95666,0.21298,-0.19859,357.76,-0.24071,0.96215,-0.12773,227.65,0.16387,0.17,0.97172,300.14 |
| 21522 | | |
| 21523 | | > select subtract #20 |
| 21524 | | |
| 21525 | | Nothing selected |
| 21526 | | |
| 21527 | | > select add #20 |
| 21528 | | |
| 21529 | | 2 models selected |
| 21530 | | |
| 21531 | | > select subtract #20 |
| 21532 | | |
| 21533 | | Nothing selected |
| 21534 | | |
| 21535 | | > hide #7 models |
| 21536 | | |
| 21537 | | > select add #20 |
| 21538 | | |
| 21539 | | 2 models selected |
| 21540 | | |
| 21541 | | > view matrix models |
| 21542 | | > #20,0.95666,0.21298,-0.19859,311.96,-0.24071,0.96215,-0.12773,227.73,0.16387,0.17,0.97172,284.57 |
| 21543 | | |
| 21544 | | > ui mousemode right "rotate selected models" |
| 21545 | | |
| 21546 | | > view matrix models |
| 21547 | | > #20,0.89857,0.42787,-0.097447,314.09,-0.41305,0.74969,-0.51706,219.97,-0.14818,0.50487,0.85038,282.45 |
| 21548 | | |
| 21549 | | > view matrix models |
| 21550 | | > #20,0.88872,0.4396,-0.13009,313.51,-0.43969,0.73699,-0.51335,219.97,-0.12979,0.51342,0.84826,282.46 |
| 21551 | | |
| 21552 | | > ui mousemode right "translate selected models" |
| 21553 | | |
| 21554 | | > view matrix models |
| 21555 | | > #20,0.88872,0.4396,-0.13009,347.36,-0.43969,0.73699,-0.51335,231.34,-0.12979,0.51342,0.84826,299.01 |
| 21556 | | |
| 21557 | | > fitmap #20 inMap #19 |
| 21558 | | |
| 21559 | | Fit map emd_2988_2015_linkage3.map in map COPI_golph_linkage3_postprocess.mrc |
| 21560 | | using 652612 points |
| 21561 | | correlation = 0.9026, correlation about mean = 0.3729, overlap = 8.04e+05 |
| 21562 | | steps = 112, shift = 18.2, angle = 12.3 degrees |
| 21563 | | |
| 21564 | | Position of emd_2988_2015_linkage3.map (#20) relative to |
| 21565 | | COPI_golph_linkage3_postprocess.mrc (#19) coordinates: |
| 21566 | | Matrix rotation and translation |
| 21567 | | 0.99933497 0.03646392 0.00008145 272.09854390 |
| 21568 | | -0.03646391 0.99933497 -0.00004234 272.11937185 |
| 21569 | | -0.00008294 0.00003934 1.00000000 360.59420077 |
| 21570 | | Axis 0.00112008 0.00225413 -0.99999683 |
| 21571 | | Axis point 7618.69992125 -7334.22915568 0.00000000 |
| 21572 | | Rotation angle (degrees) 2.08969831 |
| 21573 | | Shift along axis -359.67489280 |
| 21574 | | |
| 21575 | | |
| 21576 | | > hide #!20 models |
| 21577 | | |
| 21578 | | > show #!20 models |
| 21579 | | |
| 21580 | | > hide #!20 models |
| 21581 | | |
| 21582 | | > show #!20 models |
| 21583 | | |
| 21584 | | > hide #!20 models |
| 21585 | | |
| 21586 | | > select subtract #20 |
| 21587 | | |
| 21588 | | Nothing selected |
| 21589 | | |
| 21590 | | > hide #!1 models |
| 21591 | | |
| 21592 | | > show #!2 models |
| 21593 | | |
| 21594 | | > show #!25 models |
| 21595 | | |
| 21596 | | > select add #25 |
| 21597 | | |
| 21598 | | 2 models selected |
| 21599 | | |
| 21600 | | > view matrix models |
| 21601 | | > #25,0.6466,0.19867,-0.73651,11.706,-0.076592,0.97752,0.19644,4.369,0.75898,-0.070608,0.64728,-32.071 |
| 21602 | | |
| 21603 | | > view matrix models |
| 21604 | | > #25,0.6466,0.19867,-0.73651,-19.879,-0.076592,0.97752,0.19644,83.472,0.75898,-0.070608,0.64728,-52.205 |
| 21605 | | |
| 21606 | | > ui mousemode right "rotate selected models" |
| 21607 | | |
| 21608 | | > view matrix models |
| 21609 | | > #25,0.12133,0.26002,-0.95795,59.291,-0.88041,-0.41751,-0.22484,392.3,-0.45842,0.87067,0.17827,30.565 |
| 21610 | | |
| 21611 | | > view matrix models |
| 21612 | | > #25,0.16005,0.3047,-0.9389,47.254,-0.93859,-0.24756,-0.24034,380.5,-0.30567,0.91971,0.24637,-0.8887 |
| 21613 | | |
| 21614 | | > ui mousemode right "translate selected models" |
| 21615 | | |
| 21616 | | > view matrix models |
| 21617 | | > #25,0.16005,0.3047,-0.9389,108.88,-0.93859,-0.24756,-0.24034,444.07,-0.30567,0.91971,0.24637,158.42 |
| 21618 | | |
| 21619 | | > view matrix models |
| 21620 | | > #25,0.16005,0.3047,-0.9389,245.61,-0.93859,-0.24756,-0.24034,440.82,-0.30567,0.91971,0.24637,152.37 |
| 21621 | | |
| 21622 | | > ui mousemode right "rotate selected models" |
| 21623 | | |
| 21624 | | > view matrix models |
| 21625 | | > #25,-0.68844,0.71936,-0.092628,187.99,-0.58828,-0.62851,-0.50883,479.68,-0.42425,-0.29581,0.85587,235.84 |
| 21626 | | |
| 21627 | | > ui mousemode right "translate selected models" |
| 21628 | | |
| 21629 | | > view matrix models |
| 21630 | | > #25,-0.68844,0.71936,-0.092628,228.29,-0.58828,-0.62851,-0.50883,426.64,-0.42425,-0.29581,0.85587,244.71 |
| 21631 | | |
| 21632 | | > view matrix models |
| 21633 | | > #25,-0.68844,0.71936,-0.092628,228.62,-0.58828,-0.62851,-0.50883,425.78,-0.42425,-0.29581,0.85587,227.31 |
| 21634 | | |
| 21635 | | > view matrix models |
| 21636 | | > #25,-0.68844,0.71936,-0.092628,235.42,-0.58828,-0.62851,-0.50883,425.2,-0.42425,-0.29581,0.85587,231.72 |
| 21637 | | |
| 21638 | | > fitmap #25 inMap #19 |
| 21639 | | |
| 21640 | | Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage3_postprocess.mrc |
| 21641 | | using 65799 points |
| 21642 | | correlation = 0.8183, correlation about mean = 0.05053, overlap = 5958 |
| 21643 | | steps = 148, shift = 49.8, angle = 31.3 degrees |
| 21644 | | |
| 21645 | | Position of emd_3720_2017_leaf.map (#25) relative to |
| 21646 | | COPI_golph_linkage3_postprocess.mrc (#19) coordinates: |
| 21647 | | Matrix rotation and translation |
| 21648 | | -0.46489818 0.75248179 -0.46651995 215.17123274 |
| 21649 | | -0.88308305 -0.43190505 0.18336412 384.52257675 |
| 21650 | | -0.06351416 0.49722150 0.86529577 161.30552428 |
| 21651 | | Axis 0.18317022 -0.23519810 -0.95453157 |
| 21652 | | Axis point 222.63405314 97.56461346 0.00000000 |
| 21653 | | Rotation angle (degrees) 121.04784811 |
| 21654 | | Shift along axis -204.99723344 |
| 21655 | | |
| 21656 | | |
| 21657 | | > view matrix models |
| 21658 | | > #25,-0.63568,0.58961,-0.49826,178.72,-0.60337,-0.78211,-0.15572,220.21,-0.48151,0.20165,0.85293,33.15 |
| 21659 | | |
| 21660 | | > view matrix models |
| 21661 | | > #25,-0.63568,0.58961,-0.49826,204.73,-0.60337,-0.78211,-0.15572,153.55,-0.48151,0.20165,0.85293,68.534 |
| 21662 | | |
| 21663 | | > ui mousemode right "rotate selected models" |
| 21664 | | |
| 21665 | | > view matrix models |
| 21666 | | > #25,-0.10316,0.6244,-0.77426,174.37,-0.78422,0.42777,0.44946,-44.644,0.61184,0.65356,0.44554,-58.732 |
| 21667 | | |
| 21668 | | > view matrix models |
| 21669 | | > #25,-0.018668,0.44332,-0.89617,201.4,-0.41766,0.81092,0.40985,-126.85,0.90841,0.38194,0.17002,-25.977 |
| 21670 | | |
| 21671 | | > view matrix models |
| 21672 | | > #25,-0.021163,0.4584,-0.8885,198.94,-0.44909,0.78963,0.41809,-121.77,0.89324,0.40786,0.18915,-29.705 |
| 21673 | | |
| 21674 | | > ui mousemode right "translate selected models" |
| 21675 | | |
| 21676 | | > view matrix models |
| 21677 | | > #25,-0.021163,0.4584,-0.8885,349.6,-0.44909,0.78963,0.41809,84.38,0.89324,0.40786,0.18915,41.841 |
| 21678 | | |
| 21679 | | > view matrix models |
| 21680 | | > #25,-0.021163,0.4584,-0.8885,274.98,-0.44909,0.78963,0.41809,192.78,0.89324,0.40786,0.18915,61.831 |
| 21681 | | |
| 21682 | | > view matrix models |
| 21683 | | > #25,-0.021163,0.4584,-0.8885,42.531,-0.44909,0.78963,0.41809,110.28,0.89324,0.40786,0.18915,-60.794 |
| 21684 | | |
| 21685 | | > ui mousemode right "rotate selected models" |
| 21686 | | |
| 21687 | | > view matrix models |
| 21688 | | > #25,0.13919,0.30541,-0.94199,49.246,-0.1004,0.9507,0.2934,67.03,0.98516,0.053742,0.163,-25.73 |
| 21689 | | |
| 21690 | | > view matrix models |
| 21691 | | > #25,0.23609,0.03095,-0.97124,74.628,0.3876,0.91354,0.12333,37.266,0.89108,-0.40557,0.20368,34.664 |
| 21692 | | |
| 21693 | | > view matrix models |
| 21694 | | > #25,0.43747,0.69352,-0.57241,-76.094,-0.71054,0.65674,0.25265,175.96,0.55114,0.2962,0.78007,-81.442 |
| 21695 | | |
| 21696 | | > view matrix models |
| 21697 | | > #25,0.74812,0.65918,0.076091,-186.71,-0.64557,0.69653,0.31318,156.45,0.15345,-0.28342,0.94664,12.108 |
| 21698 | | |
| 21699 | | > view matrix models |
| 21700 | | > #25,0.77221,0.46411,0.43393,-210.12,-0.62128,0.6946,0.36269,147.85,-0.13308,-0.54967,0.82472,91.173 |
| 21701 | | |
| 21702 | | > ui mousemode right "translate selected models" |
| 21703 | | |
| 21704 | | > view matrix models |
| 21705 | | > #25,0.77221,0.46411,0.43393,-219.73,-0.62128,0.6946,0.36269,143.24,-0.13308,-0.54967,0.82472,138 |
| 21706 | | |
| 21707 | | > ui mousemode right "rotate selected models" |
| 21708 | | |
| 21709 | | > view matrix models |
| 21710 | | > #25,-0.93919,-0.2422,0.24345,81.058,0.084195,-0.84969,-0.52052,356.24,0.33292,-0.46837,0.81841,76.482 |
| 21711 | | |
| 21712 | | > view matrix models |
| 21713 | | > #25,-0.031081,0.99339,-0.11047,-125.32,-0.36442,-0.11417,-0.92421,368.75,-0.93072,0.011531,0.36556,217.5 |
| 21714 | | |
| 21715 | | > view matrix models |
| 21716 | | > #25,0.59583,0.57327,0.56244,-228.63,-0.68436,0.72893,-0.017973,193.02,-0.42028,-0.3742,0.82664,149.26 |
| 21717 | | |
| 21718 | | > view matrix models |
| 21719 | | > #25,0.75972,-0.62162,-0.19084,-12.12,0.53019,0.76208,-0.37167,95.419,0.37647,0.18118,0.90854,-16.961 |
| 21720 | | |
| 21721 | | > view matrix models |
| 21722 | | > #25,0.89727,-0.3718,0.23805,-110.11,0.43717,0.67312,-0.59648,144.14,0.061533,0.63927,0.76651,-18.596 |
| 21723 | | |
| 21724 | | > view matrix models |
| 21725 | | > #25,0.76784,-0.5143,-0.38199,-2.3573,0.18231,0.74702,-0.63931,169.35,0.61415,0.42125,0.66736,-42.795 |
| 21726 | | |
| 21727 | | > view matrix models |
| 21728 | | > #25,0.89678,-0.033832,-0.44118,-66.936,0.13282,0.97167,0.19547,45.621,0.42207,-0.23389,0.87587,31.4 |
| 21729 | | |
| 21730 | | > ui mousemode right "translate selected models" |
| 21731 | | |
| 21732 | | > view matrix models |
| 21733 | | > #25,0.89678,-0.033832,-0.44118,171.25,0.13282,0.97167,0.19547,53.745,0.42207,-0.23389,0.87587,88.916 |
| 21734 | | |
| 21735 | | > view matrix models |
| 21736 | | > #25,0.89678,-0.033832,-0.44118,195.74,0.13282,0.97167,0.19547,86.943,0.42207,-0.23389,0.87587,93.725 |
| 21737 | | |
| 21738 | | > view matrix models |
| 21739 | | > #25,0.89678,-0.033832,-0.44118,195.82,0.13282,0.97167,0.19547,119.59,0.42207,-0.23389,0.87587,139.26 |
| 21740 | | |
| 21741 | | > view matrix models |
| 21742 | | > #25,0.89678,-0.033832,-0.44118,184.36,0.13282,0.97167,0.19547,100.48,0.42207,-0.23389,0.87587,129.53 |
| 21743 | | |
| 21744 | | > view matrix models |
| 21745 | | > #25,0.89678,-0.033832,-0.44118,145.7,0.13282,0.97167,0.19547,57.277,0.42207,-0.23389,0.87587,113.63 |
| 21746 | | |
| 21747 | | > ui mousemode right "rotate selected models" |
| 21748 | | |
| 21749 | | > view matrix models |
| 21750 | | > #25,0.78116,0.27107,-0.56241,137.28,-0.5906,0.61291,-0.52491,270.19,0.20242,0.7422,0.63887,51.138 |
| 21751 | | |
| 21752 | | > view matrix models |
| 21753 | | > #25,0.77342,0.1674,-0.6114,156.54,-0.58448,0.56168,-0.58558,283.06,0.24538,0.81024,0.53225,51.27 |
| 21754 | | |
| 21755 | | > ui mousemode right "translate selected models" |
| 21756 | | |
| 21757 | | > view matrix models |
| 21758 | | > #25,0.77342,0.1674,-0.6114,169.97,-0.58448,0.56168,-0.58558,306.64,0.24538,0.81024,0.53225,81.849 |
| 21759 | | |
| 21760 | | > view matrix models |
| 21761 | | > #25,0.77342,0.1674,-0.6114,167.16,-0.58448,0.56168,-0.58558,296.96,0.24538,0.81024,0.53225,59.331 |
| 21762 | | |
| 21763 | | > ui mousemode right "rotate selected models" |
| 21764 | | |
| 21765 | | > view matrix models |
| 21766 | | > #25,0.6409,-0.51173,-0.57217,258.28,0.14465,0.81254,-0.56468,182.18,0.75387,0.27914,0.59477,57.59 |
| 21767 | | |
| 21768 | | > fitmap #25 inMap #19 |
| 21769 | | |
| 21770 | | Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage3_postprocess.mrc |
| 21771 | | using 65799 points |
| 21772 | | correlation = 0.8146, correlation about mean = 0.05, overlap = 5646 |
| 21773 | | steps = 180, shift = 38.8, angle = 14.9 degrees |
| 21774 | | |
| 21775 | | Position of emd_3720_2017_leaf.map (#25) relative to |
| 21776 | | COPI_golph_linkage3_postprocess.mrc (#19) coordinates: |
| 21777 | | Matrix rotation and translation |
| 21778 | | 0.70479046 -0.52630711 -0.47567979 198.09278448 |
| 21779 | | 0.41600529 0.84975311 -0.32381983 129.68092723 |
| 21780 | | 0.57463905 0.03033982 0.81784442 144.26284646 |
| 21781 | | Axis 0.24343593 -0.72194938 0.64770985 |
| 21782 | | Axis point -60.73686098 0.00000000 429.54979468 |
| 21783 | | Rotation angle (degrees) 46.67042076 |
| 21784 | | Shift along axis 48.04030265 |
| 21785 | | |
| 21786 | | |
| 21787 | | > view matrix models |
| 21788 | | > #25,0.078449,-0.39198,-0.91662,387.45,0.82643,0.5398,-0.16011,98.418,0.55755,-0.74496,0.36629,225.6 |
| 21789 | | |
| 21790 | | > fitmap #25 inMap #19 |
| 21791 | | |
| 21792 | | Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage3_postprocess.mrc |
| 21793 | | using 65799 points |
| 21794 | | correlation = 0.808, correlation about mean = 0.04063, overlap = 5479 |
| 21795 | | steps = 100, shift = 14.7, angle = 17.9 degrees |
| 21796 | | |
| 21797 | | Position of emd_3720_2017_leaf.map (#25) relative to |
| 21798 | | COPI_golph_linkage3_postprocess.mrc (#19) coordinates: |
| 21799 | | Matrix rotation and translation |
| 21800 | | 0.12186889 -0.39353508 -0.91119600 296.34979061 |
| 21801 | | 0.96823416 0.24908247 0.02192166 111.44966518 |
| 21802 | | 0.21833601 -0.88492265 0.41138951 343.50685782 |
| 21803 | | Axis -0.45613137 -0.56814051 0.68495294 |
| 21804 | | Axis point 175.93624035 403.10747204 0.00000000 |
| 21805 | | Rotation angle (degrees) 96.24784959 |
| 21806 | | Shift along axis 36.79252640 |
| 21807 | | |
| 21808 | | |
| 21809 | | > hide #!2 models |
| 21810 | | |
| 21811 | | > show #!2 models |
| 21812 | | |
| 21813 | | > hide #!2 models |
| 21814 | | |
| 21815 | | > show #!2 models |
| 21816 | | |
| 21817 | | > view matrix models |
| 21818 | | > #25,-0.75203,0.6566,0.057618,234.67,-0.22465,-0.17315,-0.95893,414,-0.61966,-0.73409,0.27772,375.53 |
| 21819 | | |
| 21820 | | > view matrix models |
| 21821 | | > #25,-0.7827,0.55937,-0.27292,290.32,-0.46771,-0.81792,-0.33505,441.7,-0.41064,-0.1346,0.90181,203.8 |
| 21822 | | |
| 21823 | | > fitmap #25 inMap #19 |
| 21824 | | |
| 21825 | | Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage3_postprocess.mrc |
| 21826 | | using 65799 points |
| 21827 | | correlation = 0.8588, correlation about mean = 0.04115, overlap = 5859 |
| 21828 | | steps = 260, shift = 39.3, angle = 35.6 degrees |
| 21829 | | |
| 21830 | | Position of emd_3720_2017_leaf.map (#25) relative to |
| 21831 | | COPI_golph_linkage3_postprocess.mrc (#19) coordinates: |
| 21832 | | Matrix rotation and translation |
| 21833 | | -0.08947556 0.98600460 -0.14067366 91.46359821 |
| 21834 | | -0.99282867 -0.09954020 -0.06620422 408.30779591 |
| 21835 | | -0.07928035 0.13374118 0.98784004 172.71556867 |
| 21836 | | Axis 0.10048233 -0.03085313 -0.99446035 |
| 21837 | | Axis point 237.58375679 151.90296586 0.00000000 |
| 21838 | | Rotation angle (degrees) 95.77302294 |
| 21839 | | Shift along axis -175.16588479 |
| 21840 | | |
| 21841 | | |
| 21842 | | > ui mousemode right "translate selected models" |
| 21843 | | |
| 21844 | | > view matrix models |
| 21845 | | > #25,-0.29299,0.92356,-0.24736,80.419,-0.77649,-0.3808,-0.50204,253.08,-0.55786,0.044977,0.82871,111.22 |
| 21846 | | |
| 21847 | | > view matrix models |
| 21848 | | > #25,-0.29299,0.92356,-0.24736,173.28,-0.77649,-0.3808,-0.50204,215.96,-0.55786,0.044977,0.82871,123.87 |
| 21849 | | |
| 21850 | | > view matrix models |
| 21851 | | > #25,-0.29299,0.92356,-0.24736,215.9,-0.77649,-0.3808,-0.50204,302.83,-0.55786,0.044977,0.82871,206.96 |
| 21852 | | |
| 21853 | | > view matrix models |
| 21854 | | > #25,-0.29299,0.92356,-0.24736,240.89,-0.77649,-0.3808,-0.50204,293.39,-0.55786,0.044977,0.82871,202.8 |
| 21855 | | |
| 21856 | | > view matrix models |
| 21857 | | > #25,-0.29299,0.92356,-0.24736,232.09,-0.77649,-0.3808,-0.50204,294.57,-0.55786,0.044977,0.82871,196.09 |
| 21858 | | |
| 21859 | | > fitmap #25 inMap #19 |
| 21860 | | |
| 21861 | | Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage3_postprocess.mrc |
| 21862 | | using 65799 points |
| 21863 | | correlation = 0.7571, correlation about mean = 0.009396, overlap = 5333 |
| 21864 | | steps = 188, shift = 58.4, angle = 34.9 degrees |
| 21865 | | |
| 21866 | | Position of emd_3720_2017_leaf.map (#25) relative to |
| 21867 | | COPI_golph_linkage3_postprocess.mrc (#19) coordinates: |
| 21868 | | Matrix rotation and translation |
| 21869 | | -0.15382053 0.91961510 -0.36145171 179.19271353 |
| 21870 | | -0.77488219 -0.33924589 -0.53335714 349.30800026 |
| 21871 | | -0.61310428 0.19804121 0.76477634 274.04621748 |
| 21872 | | Axis 0.39265820 0.13510209 -0.90970708 |
| 21873 | | Axis point 286.49579405 108.34974591 0.00000000 |
| 21874 | | Rotation angle (degrees) 111.35497625 |
| 21875 | | Shift along axis -131.74805496 |
| 21876 | | |
| 21877 | | |
| 21878 | | > ui mousemode right "rotate selected models" |
| 21879 | | |
| 21880 | | > view matrix models |
| 21881 | | > #25,0.030336,-0.86677,-0.49779,448.07,0.71714,0.36579,-0.59322,94.296,0.69627,-0.33899,0.63269,94.527 |
| 21882 | | |
| 21883 | | > view matrix models |
| 21884 | | > #25,0.43392,-0.79587,-0.42226,384.79,0.61903,0.6039,-0.50209,65.782,0.65461,-0.043527,0.75472,49.009 |
| 21885 | | |
| 21886 | | > view matrix models |
| 21887 | | > #25,0.34359,-0.81546,-0.46579,402.67,0.69512,0.55434,-0.45773,57.656,0.63147,-0.16651,0.75731,65.967 |
| 21888 | | |
| 21889 | | > view matrix models |
| 21890 | | > #25,0.13981,-0.8098,-0.56981,437.77,0.83787,0.40342,-0.36774,48.488,0.52767,-0.42601,0.7349,111.38 |
| 21891 | | |
| 21892 | | > view matrix models |
| 21893 | | > #25,0.2084,-0.92602,-0.31473,412.56,0.54467,0.37716,-0.74906,131.55,0.81235,-0.015318,0.58297,48.934 |
| 21894 | | |
| 21895 | | > view matrix models |
| 21896 | | > #25,0.23733,-0.93595,-0.26013,403.77,0.46879,0.34488,-0.8132,151.84,0.85083,0.07105,0.52061,41.95 |
| 21897 | | |
| 21898 | | > fitmap #25 inMap #19 |
| 21899 | | |
| 21900 | | Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage3_postprocess.mrc |
| 21901 | | using 65799 points |
| 21902 | | correlation = 0.8149, correlation about mean = 0.08031, overlap = 5858 |
| 21903 | | steps = 84, shift = 20.3, angle = 10.7 degrees |
| 21904 | | |
| 21905 | | Position of emd_3720_2017_leaf.map (#25) relative to |
| 21906 | | COPI_golph_linkage3_postprocess.mrc (#19) coordinates: |
| 21907 | | Matrix rotation and translation |
| 21908 | | -0.00934477 -0.99698756 0.07699679 343.92842577 |
| 21909 | | 0.87412989 -0.04553773 -0.48355277 133.66638721 |
| 21910 | | 0.48560235 0.06278651 0.87192215 138.36935964 |
| 21911 | | Axis 0.27431989 -0.20516304 0.93949812 |
| 21912 | | Axis point 67.24504758 222.70660197 0.00000000 |
| 21913 | | Rotation angle (degrees) 95.24876618 |
| 21914 | | Shift along axis 196.92075807 |
| 21915 | | |
| 21916 | | |
| 21917 | | > ui mousemode right "translate selected models" |
| 21918 | | |
| 21919 | | > view matrix models |
| 21920 | | > #25,0.13176,-0.98466,-0.11442,383.56,0.50261,0.16584,-0.84846,154.19,0.85441,0.054283,0.51675,20.013 |
| 21921 | | |
| 21922 | | > fitmap #25 inMap #19 |
| 21923 | | |
| 21924 | | Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage3_postprocess.mrc |
| 21925 | | using 65799 points |
| 21926 | | correlation = 0.8157, correlation about mean = 0.1387, overlap = 5885 |
| 21927 | | steps = 280, shift = 60.4, angle = 7.32 degrees |
| 21928 | | |
| 21929 | | Position of emd_3720_2017_leaf.map (#25) relative to |
| 21930 | | COPI_golph_linkage3_postprocess.mrc (#19) coordinates: |
| 21931 | | Matrix rotation and translation |
| 21932 | | -0.11704114 -0.98261050 0.14414582 335.90492708 |
| 21933 | | 0.86614263 -0.17200813 -0.46926558 162.73902599 |
| 21934 | | 0.48589952 0.06992746 0.87121285 140.55907935 |
| 21935 | | Axis 0.27567991 -0.17473266 0.94523494 |
| 21936 | | Axis point 63.08781834 214.85282853 0.00000000 |
| 21937 | | Rotation angle (degrees) 102.05896395 |
| 21938 | | Shift along axis 197.02777020 |
| 21939 | | |
| 21940 | | |
| 21941 | | > view matrix models |
| 21942 | | > #25,0.025365,-0.99862,-0.046025,403.88,0.52109,0.052498,-0.85189,187.7,0.85312,-0.002375,0.5217,-8.0185 |
| 21943 | | |
| 21944 | | > view matrix models |
| 21945 | | > #25,0.025365,-0.99862,-0.046025,371.17,0.52109,0.052498,-0.85189,164.03,0.85312,-0.002375,0.5217,9.0216 |
| 21946 | | |
| 21947 | | > ui mousemode right "rotate selected models" |
| 21948 | | |
| 21949 | | > view matrix models |
| 21950 | | > #25,0.17214,-0.82699,-0.53522,394.22,0.58883,0.52196,-0.61712,71.567,0.78971,-0.20892,0.57681,34.042 |
| 21951 | | |
| 21952 | | > ui mousemode right "translate selected models" |
| 21953 | | |
| 21954 | | > view matrix models |
| 21955 | | > #25,0.17214,-0.82699,-0.53522,412.87,0.58883,0.52196,-0.61712,72.241,0.78971,-0.20892,0.57681,28.677 |
| 21956 | | |
| 21957 | | > view matrix models |
| 21958 | | > #25,0.17214,-0.82699,-0.53522,416.21,0.58883,0.52196,-0.61712,77.092,0.78971,-0.20892,0.57681,47.65 |
| 21959 | | |
| 21960 | | > fitmap #25 inMap #19 |
| 21961 | | |
| 21962 | | Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage3_postprocess.mrc |
| 21963 | | using 65799 points |
| 21964 | | correlation = 0.8115, correlation about mean = 0.105, overlap = 5819 |
| 21965 | | steps = 136, shift = 51.6, angle = 33.7 degrees |
| 21966 | | |
| 21967 | | Position of emd_3720_2017_leaf.map (#25) relative to |
| 21968 | | COPI_golph_linkage3_postprocess.mrc (#19) coordinates: |
| 21969 | | Matrix rotation and translation |
| 21970 | | 0.17587965 -0.98196640 0.06934235 312.28291010 |
| 21971 | | 0.77224676 0.09394623 -0.62833835 155.26941272 |
| 21972 | | 0.61049268 0.16406133 0.77484359 121.80457015 |
| 21973 | | Axis 0.39629869 -0.27064267 0.87732542 |
| 21974 | | Axis point 8.39504876 234.85898165 0.00000000 |
| 21975 | | Rotation angle (degrees) 88.72020735 |
| 21976 | | Shift along axis 188.59702491 |
| 21977 | | |
| 21978 | | |
| 21979 | | > ui mousemode right "rotate selected models" |
| 21980 | | |
| 21981 | | > view matrix models |
| 21982 | | > #25,0.87079,-0.16509,-0.4631,267.92,-0.20788,0.72996,-0.65111,188.78,0.44554,0.66325,0.60133,2.6993 |
| 21983 | | |
| 21984 | | > ui mousemode right "translate selected models" |
| 21985 | | |
| 21986 | | > view matrix models |
| 21987 | | > #25,0.87079,-0.16509,-0.4631,267.89,-0.20788,0.72996,-0.65111,158.85,0.44554,0.66325,0.60133,-23.238 |
| 21988 | | |
| 21989 | | > view matrix models |
| 21990 | | > #25,0.87079,-0.16509,-0.4631,264.02,-0.20788,0.72996,-0.65111,170.51,0.44554,0.66325,0.60133,-11.694 |
| 21991 | | |
| 21992 | | > fitmap #25 inMap #19 |
| 21993 | | |
| 21994 | | Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage3_postprocess.mrc |
| 21995 | | using 65799 points |
| 21996 | | correlation = 0.8574, correlation about mean = 0.06226, overlap = 5939 |
| 21997 | | steps = 152, shift = 42.9, angle = 19.7 degrees |
| 21998 | | |
| 21999 | | Position of emd_3720_2017_leaf.map (#25) relative to |
| 22000 | | COPI_golph_linkage3_postprocess.mrc (#19) coordinates: |
| 22001 | | Matrix rotation and translation |
| 22002 | | 0.83576487 -0.54749831 -0.04174577 239.45517769 |
| 22003 | | 0.47363075 0.75728994 -0.44965086 78.95568397 |
| 22004 | | 0.27779673 0.35603031 0.89222835 115.34252799 |
| 22005 | | Axis 0.60153371 -0.23857524 0.76239035 |
| 22006 | | Axis point -147.29949365 247.37304955 0.00000000 |
| 22007 | | Rotation angle (degrees) 42.04307465 |
| 22008 | | Shift along axis 213.13952084 |
| 22009 | | |
| 22010 | | |
| 22011 | | > view matrix models |
| 22012 | | > #25,0.88695,-0.40365,-0.22447,318.07,0.067299,0.59377,-0.80181,-9.1712,0.45694,0.69606,0.55381,-229.71 |
| 22013 | | |
| 22014 | | > view matrix models |
| 22015 | | > #25,0.88695,-0.40365,-0.22447,485.47,0.067299,0.59377,-0.80181,-54.795,0.45694,0.69606,0.55381,-140.66 |
| 22016 | | |
| 22017 | | > view matrix models |
| 22018 | | > #25,0.88695,-0.40365,-0.22447,346.68,0.067299,0.59377,-0.80181,195.8,0.45694,0.69606,0.55381,-33.674 |
| 22019 | | |
| 22020 | | > view matrix models |
| 22021 | | > #25,0.88695,-0.40365,-0.22447,363.31,0.067299,0.59377,-0.80181,198.15,0.45694,0.69606,0.55381,43.09 |
| 22022 | | |
| 22023 | | > view matrix models |
| 22024 | | > #25,0.88695,-0.40365,-0.22447,393.26,0.067299,0.59377,-0.80181,186.33,0.45694,0.69606,0.55381,35.013 |
| 22025 | | |
| 22026 | | > ui mousemode right "rotate selected models" |
| 22027 | | |
| 22028 | | > view matrix models |
| 22029 | | > #25,0.95786,-0.28603,0.026445,340.41,0.28488,0.93414,-0.21501,49.115,0.036797,0.21348,0.97625,88.098 |
| 22030 | | |
| 22031 | | > view matrix models |
| 22032 | | > #25,0.83502,0.46023,0.30154,231.5,-0.21229,0.77509,-0.59512,170.88,-0.50762,0.43293,0.74492,151.79 |
| 22033 | | |
| 22034 | | > ui mousemode right "translate selected models" |
| 22035 | | |
| 22036 | | > view matrix models |
| 22037 | | > #25,0.83502,0.46023,0.30154,208.26,-0.21229,0.77509,-0.59512,140.36,-0.50762,0.43293,0.74492,122.33 |
| 22038 | | |
| 22039 | | > fitmap #25 inMap #19 |
| 22040 | | |
| 22041 | | Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage3_postprocess.mrc |
| 22042 | | using 65799 points |
| 22043 | | correlation = 0.8403, correlation about mean = 0.01596, overlap = 5988 |
| 22044 | | steps = 140, shift = 35.1, angle = 15.4 degrees |
| 22045 | | |
| 22046 | | Position of emd_3720_2017_leaf.map (#25) relative to |
| 22047 | | COPI_golph_linkage3_postprocess.mrc (#19) coordinates: |
| 22048 | | Matrix rotation and translation |
| 22049 | | 0.93891298 0.25657600 0.22937132 170.43893478 |
| 22050 | | -0.28672401 0.95179196 0.10900194 109.83885758 |
| 22051 | | -0.19034650 -0.16810960 0.96721632 235.14602314 |
| 22052 | | Axis -0.37429438 0.56691261 -0.73383500 |
| 22053 | | Axis point 765.62360610 -228.04437911 0.00000000 |
| 22054 | | Rotation angle (degrees) 21.72663142 |
| 22055 | | Shift along axis -174.08368442 |
| 22056 | | |
| 22057 | | |
| 22058 | | > view matrix models |
| 22059 | | > #25,0.86913,0.47067,0.15194,-21.085,-0.37006,0.82267,-0.4316,225.62,-0.32813,0.31889,0.88918,397.35 |
| 22060 | | |
| 22061 | | > view matrix models |
| 22062 | | > #25,0.86913,0.47067,0.15194,-74.083,-0.37006,0.82267,-0.4316,290.45,-0.32813,0.31889,0.88918,350.98 |
| 22063 | | |
| 22064 | | > view matrix models |
| 22065 | | > #25,0.86913,0.47067,0.15194,10.83,-0.37006,0.82267,-0.4316,180.97,-0.32813,0.31889,0.88918,234.15 |
| 22066 | | |
| 22067 | | > ui mousemode right "rotate selected models" |
| 22068 | | |
| 22069 | | > view matrix models |
| 22070 | | > #25,-0.98465,0.17164,-0.031778,278.29,-0.093892,-0.67424,-0.73252,365.26,-0.14716,-0.71829,0.68,363.09 |
| 22071 | | |
| 22072 | | > view matrix models |
| 22073 | | > #25,-0.87015,-0.44791,-0.20547,360.58,0.34679,-0.85281,0.39044,198.9,-0.35011,0.26849,0.89741,241.63 |
| 22074 | | |
| 22075 | | > view matrix models |
| 22076 | | > #25,-0.76484,0.28034,-0.58003,307.86,0.016261,-0.89166,-0.45241,344.36,-0.64402,-0.35545,0.67742,376.22 |
| 22077 | | |
| 22078 | | > ui mousemode right "translate selected models" |
| 22079 | | |
| 22080 | | > view matrix models |
| 22081 | | > #25,-0.76484,0.28034,-0.58003,379.57,0.016261,-0.89166,-0.45241,350.25,-0.64402,-0.35545,0.67742,283.8 |
| 22082 | | |
| 22083 | | > view matrix models |
| 22084 | | > #25,-0.76484,0.28034,-0.58003,369.76,0.016261,-0.89166,-0.45241,367.24,-0.64402,-0.35545,0.67742,282.59 |
| 22085 | | |
| 22086 | | > view matrix models |
| 22087 | | > #25,-0.76484,0.28034,-0.58003,383.29,0.016261,-0.89166,-0.45241,385.34,-0.64402,-0.35545,0.67742,302.6 |
| 22088 | | |
| 22089 | | > ui mousemode right "rotate selected models" |
| 22090 | | |
| 22091 | | > view matrix models |
| 22092 | | > #25,-0.69538,-0.27921,-0.66219,452.27,0.67736,-0.56247,-0.47414,274.14,-0.24008,-0.77825,0.58025,319.35 |
| 22093 | | |
| 22094 | | > fitmap #25 inMap #19 |
| 22095 | | |
| 22096 | | Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage3_postprocess.mrc |
| 22097 | | using 65799 points |
| 22098 | | correlation = 0.7729, correlation about mean = 0.06428, overlap = 5559 |
| 22099 | | steps = 124, shift = 14, angle = 12.6 degrees |
| 22100 | | |
| 22101 | | Position of emd_3720_2017_leaf.map (#25) relative to |
| 22102 | | COPI_golph_linkage3_postprocess.mrc (#19) coordinates: |
| 22103 | | Matrix rotation and translation |
| 22104 | | -0.79496812 -0.33189805 -0.50780843 371.67559918 |
| 22105 | | 0.44723250 -0.88620585 -0.12092275 302.28317545 |
| 22106 | | -0.40988877 -0.32323816 0.85294098 317.05588803 |
| 22107 | | Axis -0.24949388 -0.12075380 0.96081805 |
| 22108 | | Axis point 191.34710771 216.85866741 0.00000000 |
| 22109 | | Rotation angle (degrees) 156.08056652 |
| 22110 | | Shift along axis 175.40039127 |
| 22111 | | |
| 22112 | | |
| 22113 | | > ui mousemode right "translate selected models" |
| 22114 | | |
| 22115 | | > view matrix models |
| 22116 | | > #25,-0.63612,-0.48177,-0.6027,436.89,0.76263,-0.51126,-0.39624,246.44,-0.11724,-0.71169,0.69264,289.97 |
| 22117 | | |
| 22118 | | > view matrix models |
| 22119 | | > #25,-0.63612,-0.48177,-0.6027,457.81,0.76263,-0.51126,-0.39624,201.89,-0.11724,-0.71169,0.69264,293.57 |
| 22120 | | |
| 22121 | | > view matrix models |
| 22122 | | > #25,-0.63612,-0.48177,-0.6027,451.62,0.76263,-0.51126,-0.39624,205.28,-0.11724,-0.71169,0.69264,288.28 |
| 22123 | | |
| 22124 | | > view matrix models |
| 22125 | | > #25,-0.63612,-0.48177,-0.6027,468.69,0.76263,-0.51126,-0.39624,160.3,-0.11724,-0.71169,0.69264,287.48 |
| 22126 | | |
| 22127 | | > ui mousemode right "rotate selected models" |
| 22128 | | |
| 22129 | | > view matrix models |
| 22130 | | > #25,0.71382,-0.18447,-0.6756,289.81,-0.19431,0.87464,-0.44413,108.93,0.67284,0.44831,0.58848,72.766 |
| 22131 | | |
| 22132 | | > ui mousemode right "translate selected models" |
| 22133 | | |
| 22134 | | > view matrix models |
| 22135 | | > #25,0.71382,-0.18447,-0.6756,261.34,-0.19431,0.87464,-0.44413,165.52,0.67284,0.44831,0.58848,66.122 |
| 22136 | | |
| 22137 | | > fitmap #25 inMap #19 |
| 22138 | | |
| 22139 | | Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage3_postprocess.mrc |
| 22140 | | using 65799 points |
| 22141 | | correlation = 0.8211, correlation about mean = 0.05696, overlap = 5865 |
| 22142 | | steps = 140, shift = 37.1, angle = 19.5 degrees |
| 22143 | | |
| 22144 | | Position of emd_3720_2017_leaf.map (#25) relative to |
| 22145 | | COPI_golph_linkage3_postprocess.mrc (#19) coordinates: |
| 22146 | | Matrix rotation and translation |
| 22147 | | 0.63558453 -0.13882733 -0.75944671 215.48549026 |
| 22148 | | 0.10214723 0.99017298 -0.09551674 109.20996656 |
| 22149 | | 0.76524393 -0.01686642 0.64351944 156.79176190 |
| 22150 | | Axis 0.05088599 -0.98645996 0.15590819 |
| 22151 | | Axis point -69.62726704 0.00000000 321.99608968 |
| 22152 | | Rotation angle (degrees) 50.60682500 |
| 22153 | | Shift along axis -72.32094683 |
| 22154 | | |
| 22155 | | |
| 22156 | | > hide #!19 models |
| 22157 | | |
| 22158 | | > show #!19 models |
| 22159 | | |
| 22160 | | > view matrix models |
| 22161 | | > #25,0.56487,0.079977,-0.82129,357.25,-0.43496,0.87465,-0.21398,-91.971,0.70124,0.4781,0.52885,-166.95 |
| 22162 | | |
| 22163 | | > show #3 models |
| 22164 | | |
| 22165 | | > hide #3 models |
| 22166 | | |
| 22167 | | > show #4 models |
| 22168 | | |
| 22169 | | > hide #4 models |
| 22170 | | |
| 22171 | | > show #5 models |
| 22172 | | |
| 22173 | | > hide #5 models |
| 22174 | | |
| 22175 | | > show #7 models |
| 22176 | | |
| 22177 | | > hide #7 models |
| 22178 | | |
| 22179 | | > show #8 models |
| 22180 | | |
| 22181 | | > hide #8 models |
| 22182 | | |
| 22183 | | > show #!9 models |
| 22184 | | |
| 22185 | | > hide #!9 models |
| 22186 | | |
| 22187 | | > show #10 models |
| 22188 | | |
| 22189 | | > hide #10 models |
| 22190 | | |
| 22191 | | > show #12 models |
| 22192 | | |
| 22193 | | > hide #12 models |
| 22194 | | |
| 22195 | | > show #11 models |
| 22196 | | |
| 22197 | | > hide #11 models |
| 22198 | | |
| 22199 | | > show #11 models |
| 22200 | | |
| 22201 | | > hide #11 models |
| 22202 | | |
| 22203 | | > show #3 models |
| 22204 | | |
| 22205 | | > hide #3 models |
| 22206 | | |
| 22207 | | > show #4 models |
| 22208 | | |
| 22209 | | > hide #4 models |
| 22210 | | |
| 22211 | | > show #5 models |
| 22212 | | |
| 22213 | | > hide #5 models |
| 22214 | | |
| 22215 | | > show #6 models |
| 22216 | | |
| 22217 | | > hide #6 models |
| 22218 | | |
| 22219 | | > show #7 models |
| 22220 | | |
| 22221 | | > hide #7 models |
| 22222 | | |
| 22223 | | > show #8 models |
| 22224 | | |
| 22225 | | > hide #8 models |
| 22226 | | |
| 22227 | | > show #!9 models |
| 22228 | | |
| 22229 | | > hide #!9 models |
| 22230 | | |
| 22231 | | > show #10 models |
| 22232 | | |
| 22233 | | > hide #10 models |
| 22234 | | |
| 22235 | | > show #11 models |
| 22236 | | |
| 22237 | | > hide #11 models |
| 22238 | | |
| 22239 | | > show #12 models |
| 22240 | | |
| 22241 | | > hide #12 models |
| 22242 | | |
| 22243 | | > show #3 models |
| 22244 | | |
| 22245 | | > hide #3 models |
| 22246 | | |
| 22247 | | > view matrix models |
| 22248 | | > #25,0.56487,0.079977,-0.82129,433.19,-0.43496,0.87465,-0.21398,-169.73,0.70124,0.4781,0.52885,-154.32 |
| 22249 | | |
| 22250 | | > ui mousemode right "rotate selected models" |
| 22251 | | |
| 22252 | | > view matrix models |
| 22253 | | > #25,0.81689,-0.095976,-0.56876,394.71,-0.45716,0.49352,-0.73989,-57.178,0.3517,0.86442,0.35927,-140.11 |
| 22254 | | |
| 22255 | | > view matrix models |
| 22256 | | > #25,0.91216,-0.10231,-0.39687,363.6,-0.36624,0.23113,-0.90136,-16.321,0.18394,0.96753,0.17336,-110.64 |
| 22257 | | |
| 22258 | | > view matrix models |
| 22259 | | > #25,0.6864,-0.61028,-0.39548,449.48,-0.36183,0.18514,-0.91368,-9.821,0.63082,0.77025,-0.09374,-104.75 |
| 22260 | | |
| 22261 | | > view matrix models |
| 22262 | | > #25,0.5107,-0.54979,-0.66099,494.71,-0.22312,0.65772,-0.71946,-105.69,0.8303,0.51491,0.21323,-134.52 |
| 22263 | | |
| 22264 | | > view matrix models |
| 22265 | | > #25,0.46377,-0.49765,-0.73298,502.63,-0.15472,0.76913,-0.62009,-138.9,0.87234,0.40098,0.2797,-133.84 |
| 22266 | | |
| 22267 | | > ui mousemode right "translate selected models" |
| 22268 | | |
| 22269 | | > view matrix models |
| 22270 | | > #25,0.46377,-0.49765,-0.73298,397.52,-0.15472,0.76913,-0.62009,147.62,0.87234,0.40098,0.2797,-20.364 |
| 22271 | | |
| 22272 | | > ui mousemode right "rotate selected models" |
| 22273 | | |
| 22274 | | > view matrix models |
| 22275 | | > #25,0.039249,-0.99891,-0.02545,418.32,0.50742,0.041866,-0.86068,189.15,0.8608,0.020867,0.50851,-1.8357 |
| 22276 | | |
| 22277 | | > view matrix models |
| 22278 | | > #25,0.51519,-0.7739,-0.36833,379.88,0.28033,0.55826,-0.78087,143.4,0.80994,0.29904,0.50456,-28.78 |
| 22279 | | |
| 22280 | | > ui mousemode right "translate selected models" |
| 22281 | | |
| 22282 | | > view matrix models |
| 22283 | | > #25,0.51519,-0.7739,-0.36833,398.73,0.28033,0.55826,-0.78087,133.35,0.80994,0.29904,0.50456,-15.749 |
| 22284 | | |
| 22285 | | > ui mousemode right "rotate selected models" |
| 22286 | | |
| 22287 | | > view matrix models |
| 22288 | | > #25,0.22769,-0.95906,0.16839,387.34,0.81191,0.091523,-0.57657,103.92,0.53755,0.268,0.79951,-17.528 |
| 22289 | | |
| 22290 | | > ui mousemode right "translate selected models" |
| 22291 | | |
| 22292 | | > view matrix models |
| 22293 | | > #25,0.22769,-0.95906,0.16839,401.46,0.81191,0.091523,-0.57657,93.113,0.53755,0.268,0.79951,-9.3092 |
| 22294 | | |
| 22295 | | > view matrix models |
| 22296 | | > #25,0.22769,-0.95906,0.16839,398.34,0.81191,0.091523,-0.57657,95.384,0.53755,0.268,0.79951,-6.8133 |
| 22297 | | |
| 22298 | | > fitmap #25 inMap #19 |
| 22299 | | |
| 22300 | | Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage3_postprocess.mrc |
| 22301 | | using 65799 points |
| 22302 | | correlation = 0.8531, correlation about mean = 0.008104, overlap = 6210 |
| 22303 | | steps = 144, shift = 43.5, angle = 28.6 degrees |
| 22304 | | |
| 22305 | | Position of emd_3720_2017_leaf.map (#25) relative to |
| 22306 | | COPI_golph_linkage3_postprocess.mrc (#19) coordinates: |
| 22307 | | Matrix rotation and translation |
| 22308 | | -0.08298051 -0.99467949 -0.06104899 406.48563616 |
| 22309 | | 0.92333542 -0.05369233 -0.38022212 128.58648940 |
| 22310 | | 0.37492128 -0.08791972 0.92287821 157.15698151 |
| 22311 | | Axis 0.14699346 -0.21924137 0.96453416 |
| 22312 | | Axis point 112.69615180 258.89460178 0.00000000 |
| 22313 | | Rotation angle (degrees) 96.13649005 |
| 22314 | | Shift along axis 183.14253084 |
| 22315 | | |
| 22316 | | |
| 22317 | | > view matrix models |
| 22318 | | > #25,0.081608,-0.96946,-0.23127,474.58,0.61509,0.23157,-0.75368,-67.784,0.78422,-0.080746,0.61521,-173.58 |
| 22319 | | |
| 22320 | | > hide #!19 models |
| 22321 | | |
| 22322 | | > show #!19 models |
| 22323 | | |
| 22324 | | > ui mousemode right "rotate selected models" |
| 22325 | | |
| 22326 | | > view matrix models |
| 22327 | | > #25,0.37285,-0.71606,-0.59013,455.57,0.21025,0.68464,-0.6979,-82.967,0.90376,0.13614,0.40581,-187.22 |
| 22328 | | |
| 22329 | | > view matrix models |
| 22330 | | > #25,0.31841,-0.75997,-0.56662,464.06,0.28981,0.64715,-0.70513,-86.589,0.90256,0.060308,0.42631,-180.56 |
| 22331 | | |
| 22332 | | > view matrix models |
| 22333 | | > #25,0.53859,-0.56055,-0.62905,423.1,0.45902,0.82128,-0.33884,-171.44,0.70656,-0.10625,0.69963,-172.15 |
| 22334 | | |
| 22335 | | > ui mousemode right "translate selected models" |
| 22336 | | |
| 22337 | | > view matrix models |
| 22338 | | > #25,0.53859,-0.56055,-0.62905,330.34,0.45902,0.82128,-0.33884,-40.428,0.70656,-0.10625,0.69963,37.478 |
| 22339 | | |
| 22340 | | > ui mousemode right "rotate selected models" |
| 22341 | | |
| 22342 | | > view matrix models |
| 22343 | | > #25,0.447,-0.74707,-0.49201,346.09,0.16849,0.61049,-0.77389,70.935,0.87852,0.26304,0.39877,10.984 |
| 22344 | | |
| 22345 | | > view matrix models |
| 22346 | | > #25,0.36882,-0.88185,-0.2938,346.64,0.3929,0.43436,-0.81053,71.107,0.84238,0.18351,0.50668,11.293 |
| 22347 | | |
| 22348 | | > ui mousemode right "translate selected models" |
| 22349 | | |
| 22350 | | > view matrix models |
| 22351 | | > #25,0.36882,-0.88185,-0.2938,363.04,0.3929,0.43436,-0.81053,69.66,0.84238,0.18351,0.50668,37.521 |
| 22352 | | |
| 22353 | | > ui mousemode right "rotate selected models" |
| 22354 | | |
| 22355 | | > view matrix models |
| 22356 | | > #25,0.44893,-0.71625,-0.53427,363.79,0.056221,0.61936,-0.78309,82.231,0.8918,0.32152,0.31832,38.62 |
| 22357 | | |
| 22358 | | > view matrix models |
| 22359 | | > #25,0.47199,-0.68515,-0.55479,360,0.039622,0.64515,-0.76303,78.566,0.88072,0.33816,0.33165,36.249 |
| 22360 | | |
| 22361 | | > view matrix models |
| 22362 | | > #25,0.55,-0.55755,-0.6218,344.2,-0.029642,0.73103,-0.6817,66.154,0.83464,0.39337,0.38554,28.247 |
| 22363 | | |
| 22364 | | > ui mousemode right "translate selected models" |
| 22365 | | |
| 22366 | | > view matrix models |
| 22367 | | > #25,0.55,-0.55755,-0.6218,369.97,-0.029642,0.73103,-0.6817,99.681,0.83464,0.39337,0.38554,50.008 |
| 22368 | | |
| 22369 | | > view matrix models |
| 22370 | | > #25,0.55,-0.55755,-0.6218,369.48,-0.029642,0.73103,-0.6817,110.8,0.83464,0.39337,0.38554,69.87 |
| 22371 | | |
| 22372 | | > view matrix models |
| 22373 | | > #25,0.55,-0.55755,-0.6218,371.53,-0.029642,0.73103,-0.6817,110.15,0.83464,0.39337,0.38554,70.187 |
| 22374 | | |
| 22375 | | > fitmap #25 inMap #19 |
| 22376 | | |
| 22377 | | Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage3_postprocess.mrc |
| 22378 | | using 65799 points |
| 22379 | | correlation = 0.7637, correlation about mean = 0.0666, overlap = 5308 |
| 22380 | | steps = 228, shift = 76.4, angle = 26.6 degrees |
| 22381 | | |
| 22382 | | Position of emd_3720_2017_leaf.map (#25) relative to |
| 22383 | | COPI_golph_linkage3_postprocess.mrc (#19) coordinates: |
| 22384 | | Matrix rotation and translation |
| 22385 | | 0.40288608 -0.61084859 -0.68157673 313.87552292 |
| 22386 | | 0.12259994 0.77399628 -0.62120773 155.05660514 |
| 22387 | | 0.90700170 0.16671467 0.38672232 152.41943803 |
| 22388 | | Axis 0.41060187 -0.82783948 0.38221446 |
| 22389 | | Axis point 90.53176517 0.00000000 345.79455804 |
| 22390 | | Rotation angle (degrees) 73.63219680 |
| 22391 | | Shift along axis 58.77281021 |
| 22392 | | |
| 22393 | | |
| 22394 | | > view matrix models |
| 22395 | | > #25,0.32934,-0.44313,-0.83377,392.76,-0.43176,0.71463,-0.55036,210.98,0.83971,0.54124,0.044026,87.459 |
| 22396 | | |
| 22397 | | > ui mousemode right "rotate selected models" |
| 22398 | | |
| 22399 | | > view matrix models |
| 22400 | | > #25,0.90115,0.0090876,-0.43341,225.11,-0.31011,0.71212,-0.62985,207.31,0.30292,0.70199,0.64455,55.123 |
| 22401 | | |
| 22402 | | > view matrix models |
| 22403 | | > #25,0.27623,-0.83406,-0.47755,401.62,0.68728,0.51875,-0.50848,102.88,0.67183,-0.18775,0.71652,110.74 |
| 22404 | | |
| 22405 | | > view matrix models |
| 22406 | | > #25,0.065076,-0.90953,-0.41052,426.22,0.65902,0.34809,-0.66673,145.86,0.74931,-0.22715,0.62205,118.3 |
| 22407 | | |
| 22408 | | > ui mousemode right "translate selected models" |
| 22409 | | |
| 22410 | | > view matrix models |
| 22411 | | > #25,0.065076,-0.90953,-0.41052,462.84,0.65902,0.34809,-0.66673,115.41,0.74931,-0.22715,0.62205,146.28 |
| 22412 | | |
| 22413 | | > view matrix models |
| 22414 | | > #25,0.065076,-0.90953,-0.41052,520.5,0.65902,0.34809,-0.66673,-171.62,0.74931,-0.22715,0.62205,-2.5936 |
| 22415 | | |
| 22416 | | > view matrix models |
| 22417 | | > #25,0.065076,-0.90953,-0.41052,557.28,0.65902,0.34809,-0.66673,156.86,0.74931,-0.22715,0.62205,164.1 |
| 22418 | | |
| 22419 | | > ui mousemode right "rotate selected models" |
| 22420 | | |
| 22421 | | > view matrix models |
| 22422 | | > #25,0.0033305,-0.98972,-0.14295,540.95,0.98705,0.02618,-0.15826,95.772,0.16037,-0.14058,0.97699,176.65 |
| 22423 | | |
| 22424 | | > view matrix models |
| 22425 | | > #25,-0.74418,-0.65339,-0.13885,584.71,0.66699,-0.71554,-0.20768,226.42,0.036341,-0.24716,0.96829,204.43 |
| 22426 | | |
| 22427 | | > view matrix models |
| 22428 | | > #25,-0.89731,-0.33527,-0.28709,582.27,0.41715,-0.85673,-0.3033,283.2,-0.14428,-0.39192,0.90862,249.41 |
| 22429 | | |
| 22430 | | > view matrix models |
| 22431 | | > #25,-0.56159,-0.77969,-0.27696,596.12,0.81486,-0.46306,-0.34869,196.94,0.14362,-0.4215,0.89538,222.07 |
| 22432 | | |
| 22433 | | > fitmap #25 inMap #19 |
| 22434 | | |
| 22435 | | Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage3_postprocess.mrc |
| 22436 | | using 65799 points |
| 22437 | | correlation = 0.8074, correlation about mean = 0.07623, overlap = 6716 |
| 22438 | | steps = 112, shift = 33.7, angle = 18.4 degrees |
| 22439 | | |
| 22440 | | Position of emd_3720_2017_leaf.map (#25) relative to |
| 22441 | | COPI_golph_linkage3_postprocess.mrc (#19) coordinates: |
| 22442 | | Matrix rotation and translation |
| 22443 | | -0.73423213 -0.67026487 0.10792683 446.28940662 |
| 22444 | | 0.67742109 -0.73379952 0.05137081 273.55820272 |
| 22445 | | 0.04476460 0.11083001 0.99283073 225.18985831 |
| 22446 | | Axis 0.04402836 0.04677038 0.99793488 |
| 22447 | | Axis point 167.25613122 216.19175428 0.00000000 |
| 22448 | | Rotation angle (degrees) 137.52741016 |
| 22449 | | Shift along axis 257.16862959 |
| 22450 | | |
| 22451 | | |
| 22452 | | > hide #!19 models |
| 22453 | | |
| 22454 | | > show #!19 models |
| 22455 | | |
| 22456 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 22457 | | > dataset/Chimera sessions/20240125_linkage_3_fitting.cxs" |
| 22458 | | |
| 22459 | | ——— End of log from Thu Jan 25 18:04:25 2024 ——— |
| 22460 | | |
| 22461 | | opened ChimeraX session |
| 22462 | | |
| 22463 | | > select add #25 |
| 22464 | | |
| 22465 | | 2 models selected |
| 22466 | | |
| 22467 | | > ui mousemode right "translate selected models" |
| 22468 | | |
| 22469 | | > view matrix models |
| 22470 | | > #25,-0.57191,-0.8201,0.019025,692.21,0.72153,-0.51394,-0.46397,-57.266,0.39028,-0.25162,0.88565,111.7 |
| 22471 | | |
| 22472 | | > select subtract #25 |
| 22473 | | |
| 22474 | | Nothing selected |
| 22475 | | |
| 22476 | | > show #!1 models |
| 22477 | | |
| 22478 | | > hide #!1 models |
| 22479 | | |
| 22480 | | > show #!1 models |
| 22481 | | |
| 22482 | | > hide #!1 models |
| 22483 | | |
| 22484 | | > hide #!2 models |
| 22485 | | |
| 22486 | | > show #!2 models |
| 22487 | | |
| 22488 | | > show #3 models |
| 22489 | | |
| 22490 | | > show #4 models |
| 22491 | | |
| 22492 | | > show #5 models |
| 22493 | | |
| 22494 | | > show #6 models |
| 22495 | | |
| 22496 | | > show #7 models |
| 22497 | | |
| 22498 | | > show #8 models |
| 22499 | | |
| 22500 | | > show #!9 models |
| 22501 | | |
| 22502 | | > show #10 models |
| 22503 | | |
| 22504 | | > show #11 models |
| 22505 | | |
| 22506 | | > show #12 models |
| 22507 | | |
| 22508 | | > hide #!19 models |
| 22509 | | |
| 22510 | | > show #!20 models |
| 22511 | | |
| 22512 | | > hide #!20 models |
| 22513 | | |
| 22514 | | > hide #!25 models |
| 22515 | | |
| 22516 | | > show #!25 models |
| 22517 | | |
| 22518 | | > show #26 models |
| 22519 | | |
| 22520 | | > hide #26 models |
| 22521 | | |
| 22522 | | > show #!24 models |
| 22523 | | |
| 22524 | | > hide #!24 models |
| 22525 | | |
| 22526 | | > show #!24 models |
| 22527 | | |
| 22528 | | > hide #!24 models |
| 22529 | | |
| 22530 | | > show #!36 models |
| 22531 | | |
| 22532 | | > hide #!36 models |
| 22533 | | |
| 22534 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 22535 | | > dataset/Structure files/postprocess_20231221.mrc" |
| 22536 | | |
| 22537 | | Opened postprocess_20231221.mrc as #48, grid size 156,156,156, pixel 2.55, |
| 22538 | | shown at level 0.00309, step 1, values float32 |
| 22539 | | |
| 22540 | | > hide #12 models |
| 22541 | | |
| 22542 | | > hide #11 models |
| 22543 | | |
| 22544 | | > hide #10 models |
| 22545 | | |
| 22546 | | > hide #!9 models |
| 22547 | | |
| 22548 | | > hide #8 models |
| 22549 | | |
| 22550 | | > hide #7 models |
| 22551 | | |
| 22552 | | > hide #6 models |
| 22553 | | |
| 22554 | | > hide #5 models |
| 22555 | | |
| 22556 | | > hide #4 models |
| 22557 | | |
| 22558 | | > hide #3 models |
| 22559 | | |
| 22560 | | > hide #!2 models |
| 22561 | | |
| 22562 | | > show #!1 models |
| 22563 | | |
| 22564 | | > hide #!25 models |
| 22565 | | |
| 22566 | | > hide #!48 models |
| 22567 | | |
| 22568 | | > show #!48 models |
| 22569 | | |
| 22570 | | > volume #48 level 0.003869 |
| 22571 | | |
| 22572 | | > select add #48 |
| 22573 | | |
| 22574 | | 2 models selected |
| 22575 | | |
| 22576 | | > view matrix models #48,1,0,0,116.2,0,1,0,120.77,0,0,1,87.705 |
| 22577 | | |
| 22578 | | > view matrix models #48,1,0,0,112.94,0,1,0,103.77,0,0,1,99.528 |
| 22579 | | |
| 22580 | | > ui tool show "Fit in Map" |
| 22581 | | |
| 22582 | | > fitmap #48 inMap #1 |
| 22583 | | |
| 22584 | | Fit map postprocess_20231221.mrc in map postprocess_20231221.mrc using 16754 |
| 22585 | | points |
| 22586 | | correlation = 0.6069, correlation about mean = 0.153, overlap = 0.3715 |
| 22587 | | steps = 68, shift = 4.98, angle = 1.44 degrees |
| 22588 | | |
| 22589 | | Position of postprocess_20231221.mrc (#48) relative to |
| 22590 | | postprocess_20231221.mrc (#1) coordinates: |
| 22591 | | Matrix rotation and translation |
| 22592 | | 0.99972992 -0.01626780 0.01659628 2.42719609 |
| 22593 | | 0.01643779 0.99981328 -0.01015862 -7.47507851 |
| 22594 | | -0.01642792 0.01042868 0.99981067 -7.15635708 |
| 22595 | | Axis 0.40499110 0.64964855 0.64338089 |
| 22596 | | Axis point -99.52364532 0.00000000 -354.74004849 |
| 22597 | | Rotation angle (degrees) 1.45644214 |
| 22598 | | Shift along axis -8.47744448 |
| 22599 | | |
| 22600 | | |
| 22601 | | > select subtract #48 |
| 22602 | | |
| 22603 | | Nothing selected |
| 22604 | | |
| 22605 | | > open "/Users/becca/Desktop/Postdoc/Structure files/COPI |
| 22606 | | > structures/5a1x_COPI_coat_linkage3_2015.cif" |
| 22607 | | |
| 22608 | | 5a1x_COPI_coat_linkage3_2015.cif title: |
| 22609 | | The structure of the COPI coat linkage III [more info...] |
| 22610 | | |
| 22611 | | Chain information for 5a1x_COPI_coat_linkage3_2015.cif #49 |
| 22612 | | --- |
| 22613 | | Chain | Description | UniProt |
| 22614 | | A B I J | ADP-RIBOSYLATION FACTOR 1 | ARF1_YEAST 1-181 |
| 22615 | | C K | COATOMER SUBUNIT ALPHA | COPA_MOUSE 1-1224 |
| 22616 | | D L | COATOMER SUBUNIT BETA' | COPB2_MOUSE 1-905 |
| 22617 | | E M | COATOMER SUBUNIT GAMMA-1 | COPG1_MOUSE 1-874 |
| 22618 | | F N | COATOMER SUBUNIT ZETA-1 | COPZ1_MOUSE 1-177 |
| 22619 | | G O | COATOMER SUBUNIT BETA | COPB_MOUSE 1-968 |
| 22620 | | H P Q | COATOMER SUBUNIT DELTA | COPD_MOUSE 1-511 |
| 22621 | | |
| 22622 | | |
| 22623 | | > hide #!49 atoms |
| 22624 | | |
| 22625 | | > show #!49 cartoons |
| 22626 | | |
| 22627 | | > close #49 |
| 22628 | | |
| 22629 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and |
| 22630 | | > resources/Processing/Reference structures/emd_3720_2017_leaf.map" |
| 22631 | | |
| 22632 | | Opened emd_3720_2017_leaf.map as #49, grid size 128,128,128, pixel 1.78, shown |
| 22633 | | at level 0.226, step 1, values float32 |
| 22634 | | |
| 22635 | | > hide #!48 models |
| 22636 | | |
| 22637 | | > show #!48 models |
| 22638 | | |
| 22639 | | > select add #49 |
| 22640 | | |
| 22641 | | 2 models selected |
| 22642 | | |
| 22643 | | > view matrix models #49,1,0,0,268.81,0,1,0,56.189,0,0,1,40.587 |
| 22644 | | |
| 22645 | | > view matrix models #49,1,0,0,210.92,0,1,0,75.8,0,0,1,212.42 |
| 22646 | | |
| 22647 | | > view matrix models #49,1,0,0,219.19,0,1,0,199.07,0,0,1,191.45 |
| 22648 | | |
| 22649 | | > fitmap #49 inMap #1 |
| 22650 | | |
| 22651 | | Fit map emd_3720_2017_leaf.map in map postprocess_20231221.mrc using 20947 |
| 22652 | | points |
| 22653 | | correlation = 0.7115, correlation about mean = 0.145, overlap = 14.04 |
| 22654 | | steps = 212, shift = 6.68, angle = 6.88 degrees |
| 22655 | | |
| 22656 | | Position of emd_3720_2017_leaf.map (#49) relative to postprocess_20231221.mrc |
| 22657 | | (#1) coordinates: |
| 22658 | | Matrix rotation and translation |
| 22659 | | 0.99596942 0.02399632 0.08642391 97.42320621 |
| 22660 | | -0.03099432 0.99626744 0.08056385 75.43929140 |
| 22661 | | -0.08416809 -0.08291778 0.99299566 100.35660765 |
| 22662 | | Axis -0.67388984 0.70319963 -0.22667767 |
| 22663 | | Axis point 1163.48088171 0.00000000 -797.35103447 |
| 22664 | | Rotation angle (degrees) 6.96696174 |
| 22665 | | Shift along axis -35.35222896 |
| 22666 | | |
| 22667 | | |
| 22668 | | > ui mousemode right "rotate selected models" |
| 22669 | | |
| 22670 | | > view matrix models |
| 22671 | | > #49,-0.36361,-0.91597,0.1697,461.12,0.91486,-0.31678,0.25036,224.15,-0.17557,0.24628,0.95316,187.19 |
| 22672 | | |
| 22673 | | > fitmap #49 inMap #1 |
| 22674 | | |
| 22675 | | Fit map emd_3720_2017_leaf.map in map postprocess_20231221.mrc using 20947 |
| 22676 | | points |
| 22677 | | correlation = 0.6286, correlation about mean = 0.03473, overlap = 13.91 |
| 22678 | | steps = 120, shift = 9.27, angle = 5.25 degrees |
| 22679 | | |
| 22680 | | Position of emd_3720_2017_leaf.map (#49) relative to postprocess_20231221.mrc |
| 22681 | | (#1) coordinates: |
| 22682 | | Matrix rotation and translation |
| 22683 | | -0.37712124 -0.91815484 0.12153704 361.34832305 |
| 22684 | | 0.88885124 -0.32192586 0.32604787 98.25850449 |
| 22685 | | -0.26023651 0.23098793 0.93750815 87.71784471 |
| 22686 | | Axis -0.05140209 0.20643773 0.97710864 |
| 22687 | | Axis point 155.49421926 165.23084937 0.00000000 |
| 22688 | | Rotation angle (degrees) 112.38135407 |
| 22689 | | Shift along axis 87.42006807 |
| 22690 | | |
| 22691 | | |
| 22692 | | > view matrix models |
| 22693 | | > #49,-0.96284,-0.25919,-0.075825,480.47,0.26981,-0.91128,-0.31107,423.66,0.011531,-0.31998,0.94736,236 |
| 22694 | | |
| 22695 | | > fitmap #49 inMap #1 |
| 22696 | | |
| 22697 | | Fit map emd_3720_2017_leaf.map in map postprocess_20231221.mrc using 20947 |
| 22698 | | points |
| 22699 | | correlation = 0.6939, correlation about mean = 0.01582, overlap = 13.96 |
| 22700 | | steps = 216, shift = 10, angle = 11.1 degrees |
| 22701 | | |
| 22702 | | Position of emd_3720_2017_leaf.map (#49) relative to postprocess_20231221.mrc |
| 22703 | | (#1) coordinates: |
| 22704 | | Matrix rotation and translation |
| 22705 | | -0.96338804 -0.26456440 0.04346448 351.31286233 |
| 22706 | | 0.21696407 -0.86453226 -0.45333274 335.04411294 |
| 22707 | | 0.15751215 -0.42730511 0.89028100 118.52082392 |
| 22708 | | Axis 0.05252441 -0.23015104 0.97173643 |
| 22709 | | Axis point 149.91600402 204.11390906 0.00000000 |
| 22710 | | Rotation angle (degrees) 165.65458511 |
| 22711 | | Shift along axis 56.51275209 |
| 22712 | | |
| 22713 | | |
| 22714 | | > view matrix models |
| 22715 | | > #49,0.3605,0.83622,0.41326,143.37,-0.92655,0.27001,0.26191,349.54,0.10743,-0.47732,0.87214,244.28 |
| 22716 | | |
| 22717 | | > fitmap #49 inMap #1 |
| 22718 | | |
| 22719 | | Fit map emd_3720_2017_leaf.map in map postprocess_20231221.mrc using 20947 |
| 22720 | | points |
| 22721 | | correlation = 0.7336, correlation about mean = 0.04116, overlap = 14.08 |
| 22722 | | steps = 192, shift = 3.76, angle = 4.39 degrees |
| 22723 | | |
| 22724 | | Position of emd_3720_2017_leaf.map (#49) relative to postprocess_20231221.mrc |
| 22725 | | (#1) coordinates: |
| 22726 | | Matrix rotation and translation |
| 22727 | | 0.33574710 0.84776690 0.41056689 32.32305883 |
| 22728 | | -0.94090697 0.28131321 0.18856552 244.31851482 |
| 22729 | | 0.04436172 -0.44961557 0.89211988 136.24823204 |
| 22730 | | Axis -0.32996314 0.18934157 -0.92481030 |
| 22731 | | Axis point 175.22937179 134.35930874 0.00000000 |
| 22732 | | Rotation angle (degrees) 75.25070263 |
| 22733 | | Shift along axis -90.40953594 |
| 22734 | | |
| 22735 | | |
| 22736 | | > view matrix models |
| 22737 | | > #49,-0.73344,0.66639,-0.13415,346.45,-0.67575,-0.69338,0.25019,438.51,0.073705,0.27415,0.95886,149.68 |
| 22738 | | |
| 22739 | | > fitmap #49 inMap #1 |
| 22740 | | |
| 22741 | | Fit map emd_3720_2017_leaf.map in map postprocess_20231221.mrc using 20947 |
| 22742 | | points |
| 22743 | | correlation = 0.7373, correlation about mean = 0.05131, overlap = 14.78 |
| 22744 | | steps = 156, shift = 16.4, angle = 6.06 degrees |
| 22745 | | |
| 22746 | | Position of emd_3720_2017_leaf.map (#49) relative to postprocess_20231221.mrc |
| 22747 | | (#1) coordinates: |
| 22748 | | Matrix rotation and translation |
| 22749 | | -0.75027238 0.63080879 -0.19791822 260.14816342 |
| 22750 | | -0.65754750 -0.68086871 0.32256638 324.88423036 |
| 22751 | | 0.06872138 0.37215328 0.92562374 32.96806789 |
| 22752 | | Axis 0.03766304 -0.20252240 -0.97855310 |
| 22753 | | Axis point 189.62506423 108.46905602 0.00000000 |
| 22754 | | Rotation angle (degrees) 138.82991172 |
| 22755 | | Shift along axis -88.25936981 |
| 22756 | | |
| 22757 | | |
| 22758 | | > hide #!1 models |
| 22759 | | |
| 22760 | | > show #!2 models |
| 22761 | | |
| 22762 | | > hide #!48 models |
| 22763 | | |
| 22764 | | > color #49 #d783ffff models |
| 22765 | | |
| 22766 | | > view matrix models |
| 22767 | | > #49,-0.74761,0.6602,-0.072235,353.83,-0.64586,-0.69736,0.31073,439.09,0.15477,0.27896,0.94775,144.49 |
| 22768 | | |
| 22769 | | > ui mousemode right "translate selected models" |
| 22770 | | |
| 22771 | | > view matrix models |
| 22772 | | > #49,-0.74761,0.6602,-0.072235,339.45,-0.64586,-0.69736,0.31073,433.49,0.15477,0.27896,0.94775,142.67 |
| 22773 | | |
| 22774 | | > fitmap #49 inMap #2 |
| 22775 | | |
| 22776 | | Fit map emd_3720_2017_leaf.map in map emdb 3720 using 20947 points |
| 22777 | | correlation = 0.3418, correlation about mean = 0.04388, overlap = 252.2 |
| 22778 | | steps = 164, shift = 24.8, angle = 2.9 degrees |
| 22779 | | |
| 22780 | | Position of emd_3720_2017_leaf.map (#49) relative to emdb 3720 (#2) |
| 22781 | | coordinates: |
| 22782 | | Matrix rotation and translation |
| 22783 | | 0.94294873 0.25000953 -0.21987024 3.72814650 |
| 22784 | | -0.28736076 0.94466072 -0.15824008 75.52086766 |
| 22785 | | 0.16814125 0.21239436 0.96260955 -54.20533629 |
| 22786 | | Axis 0.48806167 -0.51094425 -0.70762404 |
| 22787 | | Axis point 256.63130008 46.75350863 0.00000000 |
| 22788 | | Rotation angle (degrees) 22.31512695 |
| 22789 | | Shift along axis 1.58961171 |
| 22790 | | |
| 22791 | | |
| 22792 | | > ui mousemode right "rotate selected models" |
| 22793 | | |
| 22794 | | > view matrix models |
| 22795 | | > #49,-0.97788,0.038289,-0.20562,459.88,-0.092506,-0.96089,0.26101,409.82,-0.18758,0.27426,0.94318,205.04 |
| 22796 | | |
| 22797 | | > ui mousemode right "translate selected models" |
| 22798 | | |
| 22799 | | > view matrix models |
| 22800 | | > #49,-0.97788,0.038289,-0.20562,546.42,-0.092506,-0.96089,0.26101,229.35,-0.18758,0.27426,0.94318,246.35 |
| 22801 | | |
| 22802 | | > view matrix models |
| 22803 | | > #49,-0.97788,0.038289,-0.20562,539.54,-0.092506,-0.96089,0.26101,393.65,-0.18758,0.27426,0.94318,164.28 |
| 22804 | | |
| 22805 | | > ui mousemode right "rotate selected models" |
| 22806 | | |
| 22807 | | > view matrix models |
| 22808 | | > #49,-0.68369,0.72944,0.022136,397.17,-0.6197,-0.59632,0.51026,377.32,0.3854,0.33514,0.85973,104.62 |
| 22809 | | |
| 22810 | | > ui mousemode right "translate selected models" |
| 22811 | | |
| 22812 | | > view matrix models |
| 22813 | | > #49,-0.68369,0.72944,0.022136,405.64,-0.6197,-0.59632,0.51026,417.1,0.3854,0.33514,0.85973,113.88 |
| 22814 | | |
| 22815 | | > view matrix models |
| 22816 | | > #49,-0.68369,0.72944,0.022136,322.15,-0.6197,-0.59632,0.51026,402.73,0.3854,0.33514,0.85973,78.369 |
| 22817 | | |
| 22818 | | > view matrix models |
| 22819 | | > #49,-0.68369,0.72944,0.022136,320.93,-0.6197,-0.59632,0.51026,424.67,0.3854,0.33514,0.85973,142.55 |
| 22820 | | |
| 22821 | | > view matrix models |
| 22822 | | > #49,-0.68369,0.72944,0.022136,319.54,-0.6197,-0.59632,0.51026,407.37,0.3854,0.33514,0.85973,144.39 |
| 22823 | | |
| 22824 | | > fitmap #49 inMap #2 |
| 22825 | | |
| 22826 | | Fit map emd_3720_2017_leaf.map in map emdb 3720 using 20947 points |
| 22827 | | correlation = 0.2752, correlation about mean = 0.06505, overlap = 198.1 |
| 22828 | | steps = 148, shift = 15, angle = 5.01 degrees |
| 22829 | | |
| 22830 | | Position of emd_3720_2017_leaf.map (#49) relative to emdb 3720 (#2) |
| 22831 | | coordinates: |
| 22832 | | Matrix rotation and translation |
| 22833 | | 0.89280795 0.18089064 -0.41251973 37.51137462 |
| 22834 | | -0.28427541 0.93667495 -0.20451778 66.14953212 |
| 22835 | | 0.34940155 0.29986431 0.88769361 -71.87027738 |
| 22836 | | Axis 0.49192097 -0.74309747 -0.45367379 |
| 22837 | | Axis point 213.86140005 0.00000000 33.09207816 |
| 22838 | | Rotation angle (degrees) 30.84155937 |
| 22839 | | Shift along axis 1.90274273 |
| 22840 | | |
| 22841 | | |
| 22842 | | > view matrix models |
| 22843 | | > #49,-0.73029,0.6828,0.021545,265.57,-0.59958,-0.65576,0.45879,202.65,0.32739,0.32213,0.88828,214.09 |
| 22844 | | |
| 22845 | | > ui mousemode right "rotate selected models" |
| 22846 | | |
| 22847 | | > view matrix models |
| 22848 | | > #49,0.96208,0.052255,0.2677,129.67,-0.25796,0.49316,0.83081,-17.264,-0.088605,-0.86837,0.48794,450.43 |
| 22849 | | |
| 22850 | | > view matrix models |
| 22851 | | > #49,0.93713,0.17502,0.30193,113.48,-0.30166,0.84128,0.44862,-9.7978,-0.17549,-0.51149,0.84118,375.1 |
| 22852 | | |
| 22853 | | > view matrix models |
| 22854 | | > #49,-0.73136,0.58943,0.34305,239.22,-0.21182,-0.67446,0.70727,133.71,0.64827,0.4446,0.61813,196.23 |
| 22855 | | |
| 22856 | | > view matrix models |
| 22857 | | > #49,-0.7478,0.56297,0.35194,243.16,-0.26997,-0.74213,0.61349,159.22,0.60656,0.36375,0.70695,200.1 |
| 22858 | | |
| 22859 | | > view matrix models |
| 22860 | | > #49,-0.62127,0.75793,-0.19889,270.55,-0.78358,-0.59925,0.16404,250.37,0.0051501,0.25776,0.96619,247.65 |
| 22861 | | |
| 22862 | | > ui mousemode right "translate selected models" |
| 22863 | | |
| 22864 | | > view matrix models |
| 22865 | | > #49,-0.62127,0.75793,-0.19889,287.72,-0.78358,-0.59925,0.16404,464.32,0.0051501,0.25776,0.96619,210.07 |
| 22866 | | |
| 22867 | | > view matrix models |
| 22868 | | > #49,-0.62127,0.75793,-0.19889,308.13,-0.78358,-0.59925,0.16404,463.05,0.0051501,0.25776,0.96619,216.95 |
| 22869 | | |
| 22870 | | > view matrix models |
| 22871 | | > #49,-0.62127,0.75793,-0.19889,315.35,-0.78358,-0.59925,0.16404,462.71,0.0051501,0.25776,0.96619,194.9 |
| 22872 | | |
| 22873 | | > fitmap #49 inMap #2 |
| 22874 | | |
| 22875 | | Fit map emd_3720_2017_leaf.map in map emdb 3720 using 20947 points |
| 22876 | | correlation = 1, correlation about mean = 0.9999, overlap = 1662 |
| 22877 | | steps = 112, shift = 5.43, angle = 14.7 degrees |
| 22878 | | |
| 22879 | | Position of emd_3720_2017_leaf.map (#49) relative to emdb 3720 (#2) |
| 22880 | | coordinates: |
| 22881 | | Matrix rotation and translation |
| 22882 | | 0.99999999 -0.00012557 0.00002858 0.01420688 |
| 22883 | | 0.00012557 0.99999999 -0.00005443 0.00493431 |
| 22884 | | -0.00002858 0.00005443 0.99999999 -0.00266256 |
| 22885 | | Axis 0.38932690 0.20440202 0.89813383 |
| 22886 | | Axis point -32.53401205 100.27720859 0.00000000 |
| 22887 | | Rotation angle (degrees) 0.00801087 |
| 22888 | | Shift along axis 0.00414837 |
| 22889 | | |
| 22890 | | |
| 22891 | | > select subtract #49 |
| 22892 | | |
| 22893 | | Nothing selected |
| 22894 | | |
| 22895 | | > hide #!49 models |
| 22896 | | |
| 22897 | | > color #49 #eff0f0ff models |
| 22898 | | |
| 22899 | | > color #49 #fffeb6ff models |
| 22900 | | |
| 22901 | | > color #48 #eff0f0ff models |
| 22902 | | |
| 22903 | | > color #48 #dbdbdbff models |
| 22904 | | |
| 22905 | | > show #!48 models |
| 22906 | | |
| 22907 | | > show #!49 models |
| 22908 | | |
| 22909 | | > fitmap #49 inMap #48 |
| 22910 | | |
| 22911 | | Fit map emd_3720_2017_leaf.map in map postprocess_20231221.mrc using 20947 |
| 22912 | | points |
| 22913 | | correlation = 0.5968, correlation about mean = 0.06947, overlap = 14.69 |
| 22914 | | steps = 88, shift = 11.4, angle = 3.98 degrees |
| 22915 | | |
| 22916 | | Position of emd_3720_2017_leaf.map (#49) relative to postprocess_20231221.mrc |
| 22917 | | (#48) coordinates: |
| 22918 | | Matrix rotation and translation |
| 22919 | | -0.50717000 0.85774429 -0.08398407 163.99807809 |
| 22920 | | -0.85976131 -0.51030904 -0.01987900 384.21661524 |
| 22921 | | -0.05990893 0.06212422 0.99626879 111.64334070 |
| 22922 | | Axis 0.04768653 -0.01400018 -0.99876423 |
| 22923 | | Axis point 193.70984459 143.11340542 0.00000000 |
| 22924 | | Rotation angle (degrees) 120.70414533 |
| 22925 | | Shift along axis -109.06397880 |
| 22926 | | |
| 22927 | | |
| 22928 | | > hide #!49 models |
| 22929 | | |
| 22930 | | > show #!49 models |
| 22931 | | |
| 22932 | | > hide #!2 models |
| 22933 | | |
| 22934 | | > fitmap #49 inMap #48 |
| 22935 | | |
| 22936 | | Fit map emd_3720_2017_leaf.map in map postprocess_20231221.mrc using 20947 |
| 22937 | | points |
| 22938 | | correlation = 0.5968, correlation about mean = 0.06947, overlap = 14.69 |
| 22939 | | steps = 88, shift = 11.4, angle = 3.98 degrees |
| 22940 | | |
| 22941 | | Position of emd_3720_2017_leaf.map (#49) relative to postprocess_20231221.mrc |
| 22942 | | (#48) coordinates: |
| 22943 | | Matrix rotation and translation |
| 22944 | | -0.50717000 0.85774429 -0.08398407 163.99807809 |
| 22945 | | -0.85976131 -0.51030904 -0.01987900 384.21661524 |
| 22946 | | -0.05990893 0.06212422 0.99626879 111.64334070 |
| 22947 | | Axis 0.04768653 -0.01400018 -0.99876423 |
| 22948 | | Axis point 193.70984459 143.11340542 0.00000000 |
| 22949 | | Rotation angle (degrees) 120.70414533 |
| 22950 | | Shift along axis -109.06397880 |
| 22951 | | |
| 22952 | | |
| 22953 | | > fitmap #48 inMap #1 |
| 22954 | | |
| 22955 | | Fit map postprocess_20231221.mrc in map postprocess_20231221.mrc using 16754 |
| 22956 | | points |
| 22957 | | correlation = 0.6069, correlation about mean = 0.1529, overlap = 0.3715 |
| 22958 | | steps = 48, shift = 0.00188, angle = 0.00348 degrees |
| 22959 | | |
| 22960 | | Position of postprocess_20231221.mrc (#48) relative to |
| 22961 | | postprocess_20231221.mrc (#1) coordinates: |
| 22962 | | Matrix rotation and translation |
| 22963 | | 0.99972875 -0.01630667 0.01662903 2.42798953 |
| 22964 | | 0.01647645 0.99981299 -0.01012473 -7.48955343 |
| 22965 | | -0.01646082 0.01039597 0.99981046 -7.14110640 |
| 22966 | | Axis 0.40316027 0.65010033 0.64407403 |
| 22967 | | Axis point -97.58067328 -0.00000000 -353.42317789 |
| 22968 | | Rotation angle (degrees) 1.45832380 |
| 22969 | | Shift along axis -8.48949343 |
| 22970 | | |
| 22971 | | |
| 22972 | | > fitmap #48 inMap #1 |
| 22973 | | |
| 22974 | | Fit map postprocess_20231221.mrc in map postprocess_20231221.mrc using 16754 |
| 22975 | | points |
| 22976 | | correlation = 0.6073, correlation about mean = 0.1526, overlap = 0.3711 |
| 22977 | | steps = 40, shift = 0.055, angle = 0.0241 degrees |
| 22978 | | |
| 22979 | | Position of postprocess_20231221.mrc (#48) relative to |
| 22980 | | postprocess_20231221.mrc (#1) coordinates: |
| 22981 | | Matrix rotation and translation |
| 22982 | | 0.99972533 -0.01619964 0.01693647 2.32919760 |
| 22983 | | 0.01636816 0.99981743 -0.00985898 -7.49097502 |
| 22984 | | -0.01677367 0.01013349 0.99980796 -6.97819495 |
| 22985 | | Axis 0.39233107 0.66152593 0.63910858 |
| 22986 | | Axis point -88.25260490 0.00000000 -335.89244486 |
| 22987 | | Rotation angle (degrees) 1.46000177 |
| 22988 | | Shift along axis -8.50148186 |
| 22989 | | |
| 22990 | | |
| 22991 | | > combine #38 |
| 22992 | | |
| 22993 | | > close #50 |
| 22994 | | |
| 22995 | | > combine #3 |
| 22996 | | |
| 22997 | | > combine #4 |
| 22998 | | |
| 22999 | | > combine #5 |
| 23000 | | |
| 23001 | | > combine #6 |
| 23002 | | |
| 23003 | | > combine #7 |
| 23004 | | |
| 23005 | | > combine #8 |
| 23006 | | |
| 23007 | | > combine #9 |
| 23008 | | |
| 23009 | | > combine #10 |
| 23010 | | |
| 23011 | | > combine #11 |
| 23012 | | |
| 23013 | | > combine #12 |
| 23014 | | |
| 23015 | | > fitmap #50 inMap #48 |
| 23016 | | |
| 23017 | | Fit molecule copy of CopA_F8WHL2.pdb (#50) to map postprocess_20231221.mrc |
| 23018 | | (#48) using 9810 atoms |
| 23019 | | average map value = 0.001845, steps = 100 |
| 23020 | | shifted from previous position = 10.6 |
| 23021 | | rotated from previous position = 1.5 degrees |
| 23022 | | atoms outside contour = 8562, contour level = 0.0038686 |
| 23023 | | |
| 23024 | | Position of copy of CopA_F8WHL2.pdb (#50) relative to postprocess_20231221.mrc |
| 23025 | | (#48) coordinates: |
| 23026 | | Matrix rotation and translation |
| 23027 | | 0.89986795 0.40449377 0.16316389 162.21800882 |
| 23028 | | -0.20982329 0.72942358 -0.65108787 244.64306871 |
| 23029 | | -0.38237657 0.55165752 0.74125712 239.08371875 |
| 23030 | | Axis 0.82573810 0.37453774 -0.42175593 |
| 23031 | | Axis point 0.00000000 -323.18738252 438.29584637 |
| 23032 | | Rotation angle (degrees) 46.74281473 |
| 23033 | | Shift along axis 124.74267766 |
| 23034 | | |
| 23035 | | |
| 23036 | | > fitmap #51 inMap #48 |
| 23037 | | |
| 23038 | | Fit molecule copy of CopB_Q9JIF7.pdb (#51) to map postprocess_20231221.mrc |
| 23039 | | (#48) using 7501 atoms |
| 23040 | | average map value = 0.002923, steps = 108 |
| 23041 | | shifted from previous position = 11.7 |
| 23042 | | rotated from previous position = 4.16 degrees |
| 23043 | | atoms outside contour = 5816, contour level = 0.0038686 |
| 23044 | | |
| 23045 | | Position of copy of CopB_Q9JIF7.pdb (#51) relative to postprocess_20231221.mrc |
| 23046 | | (#48) coordinates: |
| 23047 | | Matrix rotation and translation |
| 23048 | | -0.04198846 -0.73296225 0.67897224 172.35467443 |
| 23049 | | -0.03842872 0.68025347 0.73196888 204.56990533 |
| 23050 | | -0.99837879 0.00464221 -0.05672960 236.22992719 |
| 23051 | | Axis -0.37189487 0.85765897 0.35512716 |
| 23052 | | Axis point 209.20957536 0.00000000 -39.72378407 |
| 23053 | | Rotation angle (degrees) 102.07736641 |
| 23054 | | Shift along axis 195.24505821 |
| 23055 | | |
| 23056 | | |
| 23057 | | > fitmap #52 inMap #48 |
| 23058 | | |
| 23059 | | Fit molecule copy of hArf1_P84078 (#52) to map postprocess_20231221.mrc (#48) |
| 23060 | | using 1457 atoms |
| 23061 | | average map value = 0.002588, steps = 80 |
| 23062 | | shifted from previous position = 10.3 |
| 23063 | | rotated from previous position = 1.47 degrees |
| 23064 | | atoms outside contour = 1414, contour level = 0.0038686 |
| 23065 | | |
| 23066 | | Position of copy of hArf1_P84078 (#52) relative to postprocess_20231221.mrc |
| 23067 | | (#48) coordinates: |
| 23068 | | Matrix rotation and translation |
| 23069 | | 0.15747029 0.02364037 0.98724072 126.68344693 |
| 23070 | | -0.68701149 -0.71551264 0.12671568 200.57043431 |
| 23071 | | 0.70937882 -0.69819967 -0.09643077 178.41026657 |
| 23072 | | Axis -0.73410147 0.24727243 -0.63241710 |
| 23073 | | Axis point 0.00000000 138.29307647 -15.45936629 |
| 23074 | | Rotation angle (degrees) 145.81590428 |
| 23075 | | Shift along axis -156.23266836 |
| 23076 | | |
| 23077 | | |
| 23078 | | > fitmap #53 inMap #48 |
| 23079 | | |
| 23080 | | Fit molecule copy of hArf1_P84078 (#53) to map postprocess_20231221.mrc (#48) |
| 23081 | | using 1457 atoms |
| 23082 | | average map value = 0.003766, steps = 68 |
| 23083 | | shifted from previous position = 11.1 |
| 23084 | | rotated from previous position = 1.53 degrees |
| 23085 | | atoms outside contour = 827, contour level = 0.0038686 |
| 23086 | | |
| 23087 | | Position of copy of hArf1_P84078 (#53) relative to postprocess_20231221.mrc |
| 23088 | | (#48) coordinates: |
| 23089 | | Matrix rotation and translation |
| 23090 | | -0.84441476 -0.49440268 0.20622727 242.99938249 |
| 23091 | | -0.47700141 0.51875180 -0.70948306 195.94811419 |
| 23092 | | 0.24378956 -0.69746867 -0.67387246 220.55731684 |
| 23093 | | Axis 0.27872119 -0.87140571 0.40369120 |
| 23094 | | Axis point 151.43808226 0.00000000 157.19336564 |
| 23095 | | Rotation angle (degrees) 178.76502585 |
| 23096 | | Shift along axis -13.98418102 |
| 23097 | | |
| 23098 | | |
| 23099 | | > fitmap #54 inMap #48 |
| 23100 | | |
| 23101 | | Fit molecule copy of CopBprime_O55029.pdb (#54) to map |
| 23102 | | postprocess_20231221.mrc (#48) using 7214 atoms |
| 23103 | | average map value = 0.00312, steps = 92 |
| 23104 | | shifted from previous position = 11.3 |
| 23105 | | rotated from previous position = 1.45 degrees |
| 23106 | | atoms outside contour = 4652, contour level = 0.0038686 |
| 23107 | | |
| 23108 | | Position of copy of CopBprime_O55029.pdb (#54) relative to |
| 23109 | | postprocess_20231221.mrc (#48) coordinates: |
| 23110 | | Matrix rotation and translation |
| 23111 | | -0.16270160 -0.17511802 -0.97101074 188.50447383 |
| 23112 | | -0.01416695 -0.98360781 0.17976365 177.39926418 |
| 23113 | | -0.98657361 0.04300409 0.15755367 238.56491900 |
| 23114 | | Axis -0.64576341 0.07348611 0.75999304 |
| 23115 | | Axis point 189.59583986 85.38839714 0.00000000 |
| 23116 | | Rotation angle (degrees) 173.92156405 |
| 23117 | | Shift along axis 72.61476818 |
| 23118 | | |
| 23119 | | |
| 23120 | | > fitmap #55 inMap #48 |
| 23121 | | |
| 23122 | | Fit molecule copy of CopD_Q5XJY5 (#55) to map postprocess_20231221.mrc (#48) |
| 23123 | | using 1462 atoms |
| 23124 | | average map value = 0.002999, steps = 96 |
| 23125 | | shifted from previous position = 1.82 |
| 23126 | | rotated from previous position = 26.1 degrees |
| 23127 | | atoms outside contour = 1071, contour level = 0.0038686 |
| 23128 | | |
| 23129 | | Position of copy of CopD_Q5XJY5 (#55) relative to postprocess_20231221.mrc |
| 23130 | | (#48) coordinates: |
| 23131 | | Matrix rotation and translation |
| 23132 | | -0.22365199 0.94640781 0.23300654 -165.73099604 |
| 23133 | | -0.84733918 -0.30693575 0.43336679 248.84898866 |
| 23134 | | 0.48165975 -0.10051222 0.87057520 408.88830413 |
| 23135 | | Axis -0.28278127 -0.13170488 -0.95009925 |
| 23136 | | Axis point -69.18363529 197.53193420 0.00000000 |
| 23137 | | Rotation angle (degrees) 109.26915596 |
| 23138 | | Shift along axis -374.39347406 |
| 23139 | | |
| 23140 | | |
| 23141 | | > fitmap #56 inMap #48 |
| 23142 | | |
| 23143 | | Fit molecule copy of CopG_Q9QZE5 (#56) to map postprocess_20231221.mrc (#48) |
| 23144 | | using 6673 atoms |
| 23145 | | average map value = 0.002616, steps = 72 |
| 23146 | | shifted from previous position = 7.46 |
| 23147 | | rotated from previous position = 12.1 degrees |
| 23148 | | atoms outside contour = 5242, contour level = 0.0038686 |
| 23149 | | |
| 23150 | | Position of copy of CopG_Q9QZE5 (#56) relative to postprocess_20231221.mrc |
| 23151 | | (#48) coordinates: |
| 23152 | | Matrix rotation and translation |
| 23153 | | 0.38672365 -0.40023335 -0.83081771 216.26930998 |
| 23154 | | 0.63094855 -0.54221509 0.55489343 287.24095726 |
| 23155 | | -0.67256876 -0.73879365 0.04283925 259.15606717 |
| 23156 | | Axis -0.77842541 -0.09522009 0.62047322 |
| 23157 | | Axis point 0.00000000 226.69812121 118.40040222 |
| 23158 | | Rotation angle (degrees) 123.80210140 |
| 23159 | | Shift along axis -34.90123560 |
| 23160 | | |
| 23161 | | |
| 23162 | | > fitmap #57 inMap #48 |
| 23163 | | |
| 23164 | | Fit molecule copy of CopZ1_P61924.pdb (#57) to map postprocess_20231221.mrc |
| 23165 | | (#48) using 1420 atoms |
| 23166 | | average map value = 0.003311, steps = 80 |
| 23167 | | shifted from previous position = 5.47 |
| 23168 | | rotated from previous position = 13.7 degrees |
| 23169 | | atoms outside contour = 956, contour level = 0.0038686 |
| 23170 | | |
| 23171 | | Position of copy of CopZ1_P61924.pdb (#57) relative to |
| 23172 | | postprocess_20231221.mrc (#48) coordinates: |
| 23173 | | Matrix rotation and translation |
| 23174 | | 0.12580671 -0.94891133 -0.28937861 228.54452918 |
| 23175 | | -0.15144065 0.26990781 -0.95090247 253.54454699 |
| 23176 | | 0.98042767 0.16345359 -0.10974754 228.24940507 |
| 23177 | | Axis 0.59648772 -0.67969644 0.42686667 |
| 23178 | | Axis point 123.22437247 0.00000000 290.91541660 |
| 23179 | | Rotation angle (degrees) 110.91708216 |
| 23180 | | Shift along axis 61.42274304 |
| 23181 | | |
| 23182 | | |
| 23183 | | > fitmap #58 inMap #48 |
| 23184 | | |
| 23185 | | Fit molecule copy of Golph3_ Q9CRA5.pdb (#58) to map postprocess_20231221.mrc |
| 23186 | | (#48) using 2367 atoms |
| 23187 | | average map value = 0.0031, steps = 64 |
| 23188 | | shifted from previous position = 10.2 |
| 23189 | | rotated from previous position = 1.46 degrees |
| 23190 | | atoms outside contour = 1837, contour level = 0.0038686 |
| 23191 | | |
| 23192 | | Position of copy of Golph3_ Q9CRA5.pdb (#58) relative to |
| 23193 | | postprocess_20231221.mrc (#48) coordinates: |
| 23194 | | Matrix rotation and translation |
| 23195 | | 0.66051665 -0.23635093 0.71264016 198.05029470 |
| 23196 | | -0.68930093 -0.56714636 0.45078735 233.23936530 |
| 23197 | | 0.29762726 -0.78897607 -0.53752653 191.34146193 |
| 23198 | | Axis -0.89602686 0.29994650 -0.32736517 |
| 23199 | | Axis point 0.00000000 180.17635975 -4.23439426 |
| 23200 | | Rotation angle (degrees) 136.22632166 |
| 23201 | | Shift along axis -170.13758312 |
| 23202 | | |
| 23203 | | |
| 23204 | | > fitmap #59 inMap #48 |
| 23205 | | |
| 23206 | | Fit molecule copy of CopZ2_Q9CTG7.pdb (#59) to map postprocess_20231221.mrc |
| 23207 | | (#48) using 1463 atoms |
| 23208 | | average map value = 0.003943, steps = 76 |
| 23209 | | shifted from previous position = 10.4 |
| 23210 | | rotated from previous position = 1.46 degrees |
| 23211 | | atoms outside contour = 823, contour level = 0.0038686 |
| 23212 | | |
| 23213 | | Position of copy of CopZ2_Q9CTG7.pdb (#59) relative to |
| 23214 | | postprocess_20231221.mrc (#48) coordinates: |
| 23215 | | Matrix rotation and translation |
| 23216 | | -0.81851164 0.29517532 -0.49285927 229.55933059 |
| 23217 | | 0.42689991 0.88661239 -0.17797463 242.03214924 |
| 23218 | | 0.38444141 -0.35607588 -0.85171287 217.28485961 |
| 23219 | | Axis -0.19683266 -0.96956889 0.14557843 |
| 23220 | | Axis point 58.95883072 0.00000000 149.09790106 |
| 23221 | | Rotation angle (degrees) 153.10107885 |
| 23222 | | Shift along axis -248.21962617 |
| 23223 | | |
| 23224 | | |
| 23225 | | > hide #!49 models |
| 23226 | | |
| 23227 | | > hide #50 models |
| 23228 | | |
| 23229 | | > hide #51 models |
| 23230 | | |
| 23231 | | > hide #52 models |
| 23232 | | |
| 23233 | | > hide #53 models |
| 23234 | | |
| 23235 | | > hide #54 models |
| 23236 | | |
| 23237 | | > hide #55 models |
| 23238 | | |
| 23239 | | > hide #!56 models |
| 23240 | | |
| 23241 | | > hide #57 models |
| 23242 | | |
| 23243 | | > hide #58 models |
| 23244 | | |
| 23245 | | > hide #59 models |
| 23246 | | |
| 23247 | | > surface dust #48 size 25.5 |
| 23248 | | |
| 23249 | | > hide #!48 models |
| 23250 | | |
| 23251 | | > show #!1 models |
| 23252 | | |
| 23253 | | > show #!19 models |
| 23254 | | |
| 23255 | | > fitmap #1 inMap #19 |
| 23256 | | |
| 23257 | | Fit map postprocess_20231221.mrc in map COPI_golph_linkage3_postprocess.mrc |
| 23258 | | using 19065 points |
| 23259 | | correlation = 0.8356, correlation about mean = 0.1176, overlap = 85.08 |
| 23260 | | steps = 40, shift = 0.351, angle = 0.318 degrees |
| 23261 | | |
| 23262 | | Position of postprocess_20231221.mrc (#1) relative to |
| 23263 | | COPI_golph_linkage3_postprocess.mrc (#19) coordinates: |
| 23264 | | Matrix rotation and translation |
| 23265 | | 0.97200722 -0.23376239 -0.02360336 67.45044917 |
| 23266 | | 0.21512610 0.84509841 0.48941746 41.67608758 |
| 23267 | | -0.09446023 -0.48079500 0.87173014 268.62599873 |
| 23268 | | Axis -0.90558109 0.06613669 0.41898548 |
| 23269 | | Axis point 0.00000000 490.78061555 77.50615612 |
| 23270 | | Rotation angle (degrees) 32.39038011 |
| 23271 | | Shift along axis 54.22486091 |
| 23272 | | |
| 23273 | | |
| 23274 | | > fitmap #1 inMap #19 |
| 23275 | | |
| 23276 | | Fit map postprocess_20231221.mrc in map COPI_golph_linkage3_postprocess.mrc |
| 23277 | | using 19065 points |
| 23278 | | correlation = 0.8356, correlation about mean = 0.1174, overlap = 85.08 |
| 23279 | | steps = 40, shift = 0.0324, angle = 0.0109 degrees |
| 23280 | | |
| 23281 | | Position of postprocess_20231221.mrc (#1) relative to |
| 23282 | | COPI_golph_linkage3_postprocess.mrc (#19) coordinates: |
| 23283 | | Matrix rotation and translation |
| 23284 | | 0.97198583 -0.23385893 -0.02352762 67.44452109 |
| 23285 | | 0.21518735 0.84515559 0.48929177 41.70226164 |
| 23286 | | -0.09454075 -0.48064751 0.87180274 268.61429728 |
| 23287 | | Axis -0.90547054 0.06629311 0.41919963 |
| 23288 | | Axis point -0.00000000 490.84193607 77.46193790 |
| 23289 | | Rotation angle (degrees) 32.38458230 |
| 23290 | | Shift along axis 54.29855919 |
| 23291 | | |
| 23292 | | |
| 23293 | | > fitmap #3 inMap #1 |
| 23294 | | |
| 23295 | | Fit molecule CopA_F8WHL2.pdb (#3) to map postprocess_20231221.mrc (#1) using |
| 23296 | | 9810 atoms |
| 23297 | | average map value = 0.001845, steps = 80 |
| 23298 | | shifted from previous position = 0.5 |
| 23299 | | rotated from previous position = 0.397 degrees |
| 23300 | | atoms outside contour = 8378, contour level = 0.0036898 |
| 23301 | | |
| 23302 | | Position of CopA_F8WHL2.pdb (#3) relative to postprocess_20231221.mrc (#1) |
| 23303 | | coordinates: |
| 23304 | | Matrix rotation and translation |
| 23305 | | 0.90011576 0.40415046 0.16264689 162.21985406 |
| 23306 | | -0.20979229 0.72932042 -0.65121342 244.63377968 |
| 23307 | | -0.38180990 0.55204540 0.74126045 239.13299028 |
| 23308 | | Axis 0.82616958 0.37382949 -0.42153925 |
| 23309 | | Axis point 0.00000000 -322.93459090 438.32146602 |
| 23310 | | Rotation angle (degrees) 46.73699309 |
| 23311 | | Shift along axis 124.66848807 |
| 23312 | | |
| 23313 | | |
| 23314 | | > fitmap #4 inMap #1 |
| 23315 | | |
| 23316 | | Fit molecule CopB_Q9JIF7.pdb (#4) to map postprocess_20231221.mrc (#1) using |
| 23317 | | 7501 atoms |
| 23318 | | average map value = 0.002923, steps = 88 |
| 23319 | | shifted from previous position = 1.13 |
| 23320 | | rotated from previous position = 2.89 degrees |
| 23321 | | atoms outside contour = 5658, contour level = 0.0036898 |
| 23322 | | |
| 23323 | | Position of CopB_Q9JIF7.pdb (#4) relative to postprocess_20231221.mrc (#1) |
| 23324 | | coordinates: |
| 23325 | | Matrix rotation and translation |
| 23326 | | -0.04137122 -0.73310739 0.67885343 172.36282746 |
| 23327 | | -0.03849848 0.68010022 0.73210761 204.56521857 |
| 23328 | | -0.99840187 0.00415336 -0.05636010 236.23248753 |
| 23329 | | Axis -0.37218186 0.85753190 0.35513335 |
| 23330 | | Axis point 209.31345950 0.00000000 -39.81221265 |
| 23331 | | Rotation angle (degrees) 102.05294948 |
| 23332 | | Shift along axis 195.16491836 |
| 23333 | | |
| 23334 | | |
| 23335 | | > show #4 models |
| 23336 | | |
| 23337 | | > show #3 models |
| 23338 | | |
| 23339 | | > show #5 models |
| 23340 | | |
| 23341 | | > fitmap #5 inMap #1 |
| 23342 | | |
| 23343 | | Fit molecule hArf1_P84078 (#5) to map postprocess_20231221.mrc (#1) using 1457 |
| 23344 | | atoms |
| 23345 | | average map value = 0.002587, steps = 48 |
| 23346 | | shifted from previous position = 0.374 |
| 23347 | | rotated from previous position = 0.337 degrees |
| 23348 | | atoms outside contour = 1384, contour level = 0.0036898 |
| 23349 | | |
| 23350 | | Position of hArf1_P84078 (#5) relative to postprocess_20231221.mrc (#1) |
| 23351 | | coordinates: |
| 23352 | | Matrix rotation and translation |
| 23353 | | 0.15811428 0.02321485 0.98714788 126.72177245 |
| 23354 | | -0.68699131 -0.71550573 0.12686396 200.57906918 |
| 23355 | | 0.70925510 -0.69822103 -0.09718328 178.40878833 |
| 23356 | | Axis -0.73435020 0.24733284 -0.63210462 |
| 23357 | | Axis point 0.00000000 138.30490580 -15.40933580 |
| 23358 | | Rotation angle (degrees) 145.82108522 |
| 23359 | | Shift along axis -156.22138629 |
| 23360 | | |
| 23361 | | |
| 23362 | | > show #6 models |
| 23363 | | |
| 23364 | | > fitmap #6 inMap #1 |
| 23365 | | |
| 23366 | | Fit molecule hArf1_P84078 (#6) to map postprocess_20231221.mrc (#1) using 1457 |
| 23367 | | atoms |
| 23368 | | average map value = 0.003766, steps = 56 |
| 23369 | | shifted from previous position = 0.304 |
| 23370 | | rotated from previous position = 0.418 degrees |
| 23371 | | atoms outside contour = 776, contour level = 0.0036898 |
| 23372 | | |
| 23373 | | Position of hArf1_P84078 (#6) relative to postprocess_20231221.mrc (#1) |
| 23374 | | coordinates: |
| 23375 | | Matrix rotation and translation |
| 23376 | | -0.84435823 -0.49441709 0.20642408 243.00499479 |
| 23377 | | -0.47729838 0.51909518 -0.70903204 195.94467747 |
| 23378 | | 0.24340382 -0.69720293 -0.67428677 220.56142381 |
| 23379 | | Axis 0.27877785 -0.87150473 0.40343825 |
| 23380 | | Axis point 151.46502145 0.00000000 157.13713689 |
| 23381 | | Rotation angle (degrees) 178.78431992 |
| 23382 | | Shift along axis -14.03938787 |
| 23383 | | |
| 23384 | | |
| 23385 | | > show #7 models |
| 23386 | | |
| 23387 | | > fitmap #7 inMap #1 |
| 23388 | | |
| 23389 | | Fit molecule CopBprime_O55029.pdb (#7) to map postprocess_20231221.mrc (#1) |
| 23390 | | using 7214 atoms |
| 23391 | | average map value = 0.00312, steps = 48 |
| 23392 | | shifted from previous position = 0.222 |
| 23393 | | rotated from previous position = 0.329 degrees |
| 23394 | | atoms outside contour = 4437, contour level = 0.0036898 |
| 23395 | | |
| 23396 | | Position of CopBprime_O55029.pdb (#7) relative to postprocess_20231221.mrc |
| 23397 | | (#1) coordinates: |
| 23398 | | Matrix rotation and translation |
| 23399 | | -0.16289150 -0.17508251 -0.97098531 188.47404673 |
| 23400 | | -0.01383314 -0.98362735 0.17968268 177.44291164 |
| 23401 | | -0.98654701 0.04270056 0.15780260 238.55506119 |
| 23402 | | Axis -0.64568521 0.07335234 0.76007240 |
| 23403 | | Axis point 189.54184111 85.44580340 0.00000000 |
| 23404 | | Rotation angle (degrees) 173.91089427 |
| 23405 | | Shift along axis 72.64006555 |
| 23406 | | |
| 23407 | | |
| 23408 | | > fitmap #7 inMap #1 |
| 23409 | | |
| 23410 | | Fit molecule CopBprime_O55029.pdb (#7) to map postprocess_20231221.mrc (#1) |
| 23411 | | using 7214 atoms |
| 23412 | | average map value = 0.00312, steps = 40 |
| 23413 | | shifted from previous position = 0.00485 |
| 23414 | | rotated from previous position = 0.0121 degrees |
| 23415 | | atoms outside contour = 4437, contour level = 0.0036898 |
| 23416 | | |
| 23417 | | Position of CopBprime_O55029.pdb (#7) relative to postprocess_20231221.mrc |
| 23418 | | (#1) coordinates: |
| 23419 | | Matrix rotation and translation |
| 23420 | | -0.16281971 -0.17504579 -0.97100397 188.47744403 |
| 23421 | | -0.01403174 -0.98362611 0.17967409 177.43972685 |
| 23422 | | -0.98655605 0.04287936 0.15769752 238.55922073 |
| 23423 | | Axis -0.64571671 0.07341102 0.76003997 |
| 23424 | | Axis point 189.56315070 85.42306787 0.00000000 |
| 23425 | | Rotation angle (degrees) 173.91955374 |
| 23426 | | Shift along axis 72.63754008 |
| 23427 | | |
| 23428 | | |
| 23429 | | > show #8 models |
| 23430 | | |
| 23431 | | > fitmap #8 inMap #1 |
| 23432 | | |
| 23433 | | Fit molecule CopD_Q5XJY5 (#8) to map postprocess_20231221.mrc (#1) using 1462 |
| 23434 | | atoms |
| 23435 | | average map value = 0.003728, steps = 48 |
| 23436 | | shifted from previous position = 0.235 |
| 23437 | | rotated from previous position = 0.36 degrees |
| 23438 | | atoms outside contour = 876, contour level = 0.0036898 |
| 23439 | | |
| 23440 | | Position of CopD_Q5XJY5 (#8) relative to postprocess_20231221.mrc (#1) |
| 23441 | | coordinates: |
| 23442 | | Matrix rotation and translation |
| 23443 | | 0.23941733 0.93122644 0.27476658 -92.91539761 |
| 23444 | | -0.88619480 0.09397695 0.45368174 105.66683335 |
| 23445 | | 0.39665871 -0.35211598 0.84774773 472.45399925 |
| 23446 | | Axis -0.40456161 -0.06119759 -0.91246083 |
| 23447 | | Axis point -102.47568113 189.84385384 0.00000000 |
| 23448 | | Rotation angle (degrees) 84.80354261 |
| 23449 | | Shift along axis -399.97231985 |
| 23450 | | |
| 23451 | | |
| 23452 | | > fitmap #8 inMap #1 |
| 23453 | | |
| 23454 | | Fit molecule CopD_Q5XJY5 (#8) to map postprocess_20231221.mrc (#1) using 1462 |
| 23455 | | atoms |
| 23456 | | average map value = 0.003729, steps = 48 |
| 23457 | | shifted from previous position = 0.0486 |
| 23458 | | rotated from previous position = 0.0245 degrees |
| 23459 | | atoms outside contour = 873, contour level = 0.0036898 |
| 23460 | | |
| 23461 | | Position of CopD_Q5XJY5 (#8) relative to postprocess_20231221.mrc (#1) |
| 23462 | | coordinates: |
| 23463 | | Matrix rotation and translation |
| 23464 | | 0.23902942 0.93135641 0.27466377 -93.00941180 |
| 23465 | | -0.88623957 0.09366294 0.45365922 105.73859422 |
| 23466 | | 0.39679260 -0.35185580 0.84779310 472.34895334 |
| 23467 | | Axis -0.40440757 -0.06131459 -0.91252125 |
| 23468 | | Axis point -102.45424420 189.79474542 0.00000000 |
| 23469 | | Rotation angle (degrees) 84.82242906 |
| 23470 | | Shift along axis -399.89806748 |
| 23471 | | |
| 23472 | | |
| 23473 | | > show #!9 models |
| 23474 | | |
| 23475 | | > fitmap #9 inMap #1 |
| 23476 | | |
| 23477 | | Fit molecule CopG_Q9QZE5 (#9) to map postprocess_20231221.mrc (#1) using 6673 |
| 23478 | | atoms |
| 23479 | | average map value = 0.003524, steps = 60 |
| 23480 | | shifted from previous position = 0.672 |
| 23481 | | rotated from previous position = 0.357 degrees |
| 23482 | | atoms outside contour = 4570, contour level = 0.0036898 |
| 23483 | | |
| 23484 | | Position of CopG_Q9QZE5 (#9) relative to postprocess_20231221.mrc (#1) |
| 23485 | | coordinates: |
| 23486 | | Matrix rotation and translation |
| 23487 | | 0.48917059 -0.51138944 -0.70653589 223.55312567 |
| 23488 | | 0.54924443 -0.44865841 0.70500793 282.28695497 |
| 23489 | | -0.67752688 -0.73293005 0.06140730 258.73442159 |
| 23490 | | Axis -0.80465553 -0.01623314 0.59351998 |
| 23491 | | Axis point 0.00000000 245.05249647 103.84569293 |
| 23492 | | Rotation angle (degrees) 116.68212467 |
| 23493 | | Shift along axis -30.90161602 |
| 23494 | | |
| 23495 | | |
| 23496 | | > fitmap #9 inMap #1 |
| 23497 | | |
| 23498 | | Fit molecule CopG_Q9QZE5 (#9) to map postprocess_20231221.mrc (#1) using 6673 |
| 23499 | | atoms |
| 23500 | | average map value = 0.003524, steps = 44 |
| 23501 | | shifted from previous position = 0.0224 |
| 23502 | | rotated from previous position = 0.0606 degrees |
| 23503 | | atoms outside contour = 4573, contour level = 0.0036898 |
| 23504 | | |
| 23505 | | Position of CopG_Q9QZE5 (#9) relative to postprocess_20231221.mrc (#1) |
| 23506 | | coordinates: |
| 23507 | | Matrix rotation and translation |
| 23508 | | 0.48848080 -0.51208562 -0.70650889 223.58707553 |
| 23509 | | 0.54899718 -0.44897481 0.70499909 282.29529538 |
| 23510 | | -0.67822460 -0.73224991 0.06181799 258.73071835 |
| 23511 | | Axis -0.80440475 -0.01583026 0.59387069 |
| 23512 | | Axis point 0.00000000 245.05530168 103.92806394 |
| 23513 | | Rotation angle (degrees) 116.70121957 |
| 23514 | | Shift along axis -30.67072406 |
| 23515 | | |
| 23516 | | |
| 23517 | | > show #10 models |
| 23518 | | |
| 23519 | | > fitmap #10 inMap #1 |
| 23520 | | |
| 23521 | | Fit molecule CopZ1_P61924.pdb (#10) to map postprocess_20231221.mrc (#1) using |
| 23522 | | 1420 atoms |
| 23523 | | average map value = 0.003933, steps = 48 |
| 23524 | | shifted from previous position = 0.582 |
| 23525 | | rotated from previous position = 0.356 degrees |
| 23526 | | atoms outside contour = 728, contour level = 0.0036898 |
| 23527 | | |
| 23528 | | Position of CopZ1_P61924.pdb (#10) relative to postprocess_20231221.mrc (#1) |
| 23529 | | coordinates: |
| 23530 | | Matrix rotation and translation |
| 23531 | | 0.16485347 -0.93977365 -0.29941414 230.49392590 |
| 23532 | | -0.38653362 0.21772848 -0.89620649 241.45930184 |
| 23533 | | 0.90742223 0.26347638 -0.32736081 218.20262698 |
| 23534 | | Axis 0.65787163 -0.68462114 0.31384521 |
| 23535 | | Axis point 143.38485457 -0.00000000 249.45112759 |
| 23536 | | Rotation angle (degrees) 118.18951155 |
| 23537 | | Shift along axis 54.80912228 |
| 23538 | | |
| 23539 | | |
| 23540 | | > fitmap #10 inMap #1 |
| 23541 | | |
| 23542 | | Fit molecule CopZ1_P61924.pdb (#10) to map postprocess_20231221.mrc (#1) using |
| 23543 | | 1420 atoms |
| 23544 | | average map value = 0.003933, steps = 44 |
| 23545 | | shifted from previous position = 0.00907 |
| 23546 | | rotated from previous position = 0.0254 degrees |
| 23547 | | atoms outside contour = 728, contour level = 0.0036898 |
| 23548 | | |
| 23549 | | Position of CopZ1_P61924.pdb (#10) relative to postprocess_20231221.mrc (#1) |
| 23550 | | coordinates: |
| 23551 | | Matrix rotation and translation |
| 23552 | | 0.16515139 -0.93969311 -0.29950275 230.49951829 |
| 23553 | | -0.38625432 0.21779168 -0.89631155 241.46263680 |
| 23554 | | 0.90748698 0.26371132 -0.32699192 218.19656412 |
| 23555 | | Axis 0.65791855 -0.68455628 0.31388833 |
| 23556 | | Axis point 143.36744648 0.00000000 249.50084586 |
| 23557 | | Rotation angle (degrees) 118.16578701 |
| 23558 | | Shift along axis 54.84450072 |
| 23559 | | |
| 23560 | | |
| 23561 | | > show #11 models |
| 23562 | | |
| 23563 | | > fitmap #11 inMap #1 |
| 23564 | | |
| 23565 | | Fit molecule Golph3_ Q9CRA5.pdb (#11) to map postprocess_20231221.mrc (#1) |
| 23566 | | using 2367 atoms |
| 23567 | | average map value = 0.0031, steps = 40 |
| 23568 | | shifted from previous position = 0.484 |
| 23569 | | rotated from previous position = 0.318 degrees |
| 23570 | | atoms outside contour = 1695, contour level = 0.0036898 |
| 23571 | | |
| 23572 | | Position of Golph3_ Q9CRA5.pdb (#11) relative to postprocess_20231221.mrc (#1) |
| 23573 | | coordinates: |
| 23574 | | Matrix rotation and translation |
| 23575 | | 0.66062637 -0.23615777 0.71260249 198.04212837 |
| 23576 | | -0.68915421 -0.56722905 0.45090762 233.23273346 |
| 23577 | | 0.29772350 -0.78897447 -0.53747558 191.33681360 |
| 23578 | | Axis -0.89605993 0.29983209 -0.32737948 |
| 23579 | | Axis point 0.00000000 180.15544061 -4.23442000 |
| 23580 | | Rotation angle (degrees) 136.22309267 |
| 23581 | | Shift along axis -170.16670371 |
| 23582 | | |
| 23583 | | |
| 23584 | | > fitmap #11 inMap #1 |
| 23585 | | |
| 23586 | | Fit molecule Golph3_ Q9CRA5.pdb (#11) to map postprocess_20231221.mrc (#1) |
| 23587 | | using 2367 atoms |
| 23588 | | average map value = 0.0031, steps = 40 |
| 23589 | | shifted from previous position = 0.0105 |
| 23590 | | rotated from previous position = 0.0123 degrees |
| 23591 | | atoms outside contour = 1696, contour level = 0.0036898 |
| 23592 | | |
| 23593 | | Position of Golph3_ Q9CRA5.pdb (#11) relative to postprocess_20231221.mrc (#1) |
| 23594 | | coordinates: |
| 23595 | | Matrix rotation and translation |
| 23596 | | 0.66052896 -0.23634807 0.71262969 198.04815956 |
| 23597 | | -0.68927801 -0.56718464 0.45077422 233.23880784 |
| 23598 | | 0.29765300 -0.78894941 -0.53755142 191.34107964 |
| 23599 | | Axis -0.89603248 0.29993184 -0.32736323 |
| 23600 | | Axis point 0.00000000 180.17191035 -4.22943965 |
| 23601 | | Rotation angle (degrees) 136.22842742 |
| 23602 | | Shift along axis -170.13987198 |
| 23603 | | |
| 23604 | | |
| 23605 | | > show #12 models |
| 23606 | | |
| 23607 | | > fitmap #12 inMap #1 |
| 23608 | | |
| 23609 | | Fit molecule CopZ2_Q9CTG7.pdb (#12) to map postprocess_20231221.mrc (#1) using |
| 23610 | | 1463 atoms |
| 23611 | | average map value = 0.003943, steps = 48 |
| 23612 | | shifted from previous position = 0.564 |
| 23613 | | rotated from previous position = 0.308 degrees |
| 23614 | | atoms outside contour = 792, contour level = 0.0036898 |
| 23615 | | |
| 23616 | | Position of CopZ2_Q9CTG7.pdb (#12) relative to postprocess_20231221.mrc (#1) |
| 23617 | | coordinates: |
| 23618 | | Matrix rotation and translation |
| 23619 | | -0.81874430 0.29468639 -0.49276540 229.57707351 |
| 23620 | | 0.42646349 0.88676202 -0.17827520 242.04440837 |
| 23621 | | 0.38443036 -0.35610825 -0.85170432 217.26779618 |
| 23622 | | Axis -0.19656816 -0.96961028 0.14566010 |
| 23623 | | Axis point 59.00805506 0.00000000 149.10621012 |
| 23624 | | Rotation angle (degrees) 153.10579582 |
| 23625 | | Shift along axis -248.16903926 |
| 23626 | | |
| 23627 | | |
| 23628 | | > fitmap #12 inMap #1 |
| 23629 | | |
| 23630 | | Fit molecule CopZ2_Q9CTG7.pdb (#12) to map postprocess_20231221.mrc (#1) using |
| 23631 | | 1463 atoms |
| 23632 | | average map value = 0.003943, steps = 40 |
| 23633 | | shifted from previous position = 0.0335 |
| 23634 | | rotated from previous position = 0.0211 degrees |
| 23635 | | atoms outside contour = 791, contour level = 0.0036898 |
| 23636 | | |
| 23637 | | Position of CopZ2_Q9CTG7.pdb (#12) relative to postprocess_20231221.mrc (#1) |
| 23638 | | coordinates: |
| 23639 | | Matrix rotation and translation |
| 23640 | | -0.81866518 0.29497106 -0.49272652 229.57125241 |
| 23641 | | 0.42677568 0.88660223 -0.17832284 242.02908265 |
| 23642 | | 0.38425235 -0.35627040 -0.85171684 217.29672636 |
| 23643 | | Axis -0.19673469 -0.96956748 0.14572013 |
| 23644 | | Axis point 58.98526141 0.00000000 149.11804424 |
| 23645 | | Rotation angle (degrees) 153.11169842 |
| 23646 | | Shift along axis -248.16364946 |
| 23647 | | |
| 23648 | | |
| 23649 | | > hide #12 models |
| 23650 | | |
| 23651 | | > hide #11 models |
| 23652 | | |
| 23653 | | > hide #10 models |
| 23654 | | |
| 23655 | | > hide #!9 models |
| 23656 | | |
| 23657 | | > hide #8 models |
| 23658 | | |
| 23659 | | > hide #7 models |
| 23660 | | |
| 23661 | | > hide #6 models |
| 23662 | | |
| 23663 | | > hide #5 models |
| 23664 | | |
| 23665 | | > hide #4 models |
| 23666 | | |
| 23667 | | > hide #3 models |
| 23668 | | |
| 23669 | | > show #!2 models |
| 23670 | | |
| 23671 | | > fitmap #2 inMap #19 |
| 23672 | | |
| 23673 | | Fit map emdb 3720 in map COPI_golph_linkage3_postprocess.mrc using 59756 |
| 23674 | | points |
| 23675 | | correlation = 0.9221, correlation about mean = 0.1307, overlap = 7982 |
| 23676 | | steps = 60, shift = 1.8, angle = 1.99 degrees |
| 23677 | | |
| 23678 | | Position of emdb 3720 (#2) relative to COPI_golph_linkage3_postprocess.mrc |
| 23679 | | (#19) coordinates: |
| 23680 | | Matrix rotation and translation |
| 23681 | | -0.31594025 0.94479671 -0.08683858 142.25623042 |
| 23682 | | -0.83994174 -0.23595976 0.48869302 440.74618377 |
| 23683 | | 0.44122515 0.22733714 0.86812338 169.14183802 |
| 23684 | | Axis -0.13905746 -0.28096250 -0.94959102 |
| 23685 | | Axis point 189.74687204 158.49424114 0.00000000 |
| 23686 | | Rotation angle (degrees) 109.99196218 |
| 23687 | | Shift along axis -304.23050762 |
| 23688 | | |
| 23689 | | |
| 23690 | | > fitmap #2 inMap #19 |
| 23691 | | |
| 23692 | | Fit map emdb 3720 in map COPI_golph_linkage3_postprocess.mrc using 59756 |
| 23693 | | points |
| 23694 | | correlation = 0.9222, correlation about mean = 0.1314, overlap = 7982 |
| 23695 | | steps = 44, shift = 0.0692, angle = 0.0438 degrees |
| 23696 | | |
| 23697 | | Position of emdb 3720 (#2) relative to COPI_golph_linkage3_postprocess.mrc |
| 23698 | | (#19) coordinates: |
| 23699 | | Matrix rotation and translation |
| 23700 | | -0.31615189 0.94467086 -0.08743537 142.35257321 |
| 23701 | | -0.83978742 -0.23578672 0.48904164 440.66001664 |
| 23702 | | 0.44136729 0.22803856 0.86786712 169.00880070 |
| 23703 | | Axis -0.13887768 -0.28137172 -0.94949616 |
| 23704 | | Axis point 189.73292704 158.37878100 0.00000000 |
| 23705 | | Rotation angle (degrees) 110.00095137 |
| 23706 | | Shift along axis -304.23206571 |
| 23707 | | |
| 23708 | | |
| 23709 | | > hide #!1 models |
| 23710 | | |
| 23711 | | > show #!25 models |
| 23712 | | |
| 23713 | | > select add #25 |
| 23714 | | |
| 23715 | | 2 models selected |
| 23716 | | |
| 23717 | | > view matrix models |
| 23718 | | > #25,-0.57191,-0.8201,0.019025,107.88,0.72153,-0.51394,-0.46397,240.5,0.39028,-0.25162,0.88565,97.921 |
| 23719 | | |
| 23720 | | > ui mousemode right "rotate selected models" |
| 23721 | | |
| 23722 | | > view matrix models |
| 23723 | | > #25,-0.97643,0.20843,-0.05603,40.105,-0.18476,-0.9414,-0.28218,371.44,-0.11156,-0.26518,0.95772,147.33 |
| 23724 | | |
| 23725 | | > view matrix models |
| 23726 | | > #25,0.38166,-0.92429,-0.0044408,15.551,0.42044,0.17788,-0.88971,244.28,0.82314,0.3377,0.4565,31.494 |
| 23727 | | |
| 23728 | | > ui mousemode right "translate selected models" |
| 23729 | | |
| 23730 | | > view matrix models |
| 23731 | | > #25,0.38166,-0.92429,-0.0044408,463.08,0.42044,0.17788,-0.88971,150.43,0.82314,0.3377,0.4565,69.094 |
| 23732 | | |
| 23733 | | > view matrix models |
| 23734 | | > #25,0.38166,-0.92429,-0.0044408,472.3,0.42044,0.17788,-0.88971,144.63,0.82314,0.3377,0.4565,54.578 |
| 23735 | | |
| 23736 | | > view matrix models |
| 23737 | | > #25,0.38166,-0.92429,-0.0044408,462.57,0.42044,0.17788,-0.88971,156.68,0.82314,0.3377,0.4565,47.084 |
| 23738 | | |
| 23739 | | > fitmap #25 inMap #19 |
| 23740 | | |
| 23741 | | Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage3_postprocess.mrc |
| 23742 | | using 65799 points |
| 23743 | | correlation = 0.9188, correlation about mean = 0.141, overlap = 8478 |
| 23744 | | steps = 84, shift = 4.7, angle = 7.97 degrees |
| 23745 | | |
| 23746 | | Position of emd_3720_2017_leaf.map (#25) relative to |
| 23747 | | COPI_golph_linkage3_postprocess.mrc (#19) coordinates: |
| 23748 | | Matrix rotation and translation |
| 23749 | | 0.31594010 -0.94484317 0.08633230 402.08767860 |
| 23750 | | 0.84006149 0.23628301 -0.48833090 103.52010046 |
| 23751 | | 0.44099725 0.22680775 0.86837762 169.21551421 |
| 23752 | | Axis 0.36574862 -0.18138890 0.91286692 |
| 23753 | | Axis point 62.17270241 271.09250194 0.00000000 |
| 23754 | | Rotation angle (degrees) 77.86004514 |
| 23755 | | Shift along axis 282.75686127 |
| 23756 | | |
| 23757 | | |
| 23758 | | > fitmap #25 inMap #19 |
| 23759 | | |
| 23760 | | Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage3_postprocess.mrc |
| 23761 | | using 65799 points |
| 23762 | | correlation = 0.9188, correlation about mean = 0.1411, overlap = 8478 |
| 23763 | | steps = 60, shift = 0.0604, angle = 0.0187 degrees |
| 23764 | | |
| 23765 | | Position of emd_3720_2017_leaf.map (#25) relative to |
| 23766 | | COPI_golph_linkage3_postprocess.mrc (#19) coordinates: |
| 23767 | | Matrix rotation and translation |
| 23768 | | 0.31589866 -0.94483161 0.08660999 402.09680047 |
| 23769 | | 0.84018832 0.23616260 -0.48817090 103.45853133 |
| 23770 | | 0.44078525 0.22698124 0.86843992 169.19285447 |
| 23771 | | Axis 0.36575152 -0.18113647 0.91291588 |
| 23772 | | Axis point 62.28097693 271.01210874 0.00000000 |
| 23773 | | Rotation angle (degrees) 77.86296205 |
| 23774 | | Shift along axis 282.78624492 |
| 23775 | | |
| 23776 | | |
| 23777 | | > fitmap #25 inMap #19 |
| 23778 | | |
| 23779 | | Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage3_postprocess.mrc |
| 23780 | | using 65799 points |
| 23781 | | correlation = 0.9188, correlation about mean = 0.1412, overlap = 8478 |
| 23782 | | steps = 44, shift = 0.06, angle = 0.0158 degrees |
| 23783 | | |
| 23784 | | Position of emd_3720_2017_leaf.map (#25) relative to |
| 23785 | | COPI_golph_linkage3_postprocess.mrc (#19) coordinates: |
| 23786 | | Matrix rotation and translation |
| 23787 | | 0.31598273 -0.94482437 0.08638198 402.05546991 |
| 23788 | | 0.84007328 0.23630678 -0.48829911 103.48150335 |
| 23789 | | 0.44094424 0.22686128 0.86839056 169.18732136 |
| 23790 | | Axis 0.36576293 -0.18133797 0.91287131 |
| 23791 | | Axis point 62.19547617 271.05309880 0.00000000 |
| 23792 | | Rotation angle (degrees) 77.85772053 |
| 23793 | | Shift along axis 282.73811193 |
| 23794 | | |
| 23795 | | |
| 23796 | | > select subtract #25 |
| 23797 | | |
| 23798 | | Nothing selected |
| 23799 | | |
| 23800 | | > hide #!25 models |
| 23801 | | |
| 23802 | | > show #!25 models |
| 23803 | | |
| 23804 | | > show #!37 models |
| 23805 | | |
| 23806 | | > select add #37 |
| 23807 | | |
| 23808 | | 2 models selected |
| 23809 | | |
| 23810 | | > view matrix models |
| 23811 | | > #37,-0.61824,-0.62388,-0.47807,233.58,0.7555,-0.30392,-0.58039,107.22,0.2168,-0.72,0.65924,222.03 |
| 23812 | | |
| 23813 | | > ui mousemode right "rotate selected models" |
| 23814 | | |
| 23815 | | > view matrix models |
| 23816 | | > #37,-0.97159,0.19811,0.12949,103.65,-0.23662,-0.8022,-0.54817,275.26,-0.0047197,-0.56324,0.82628,208.66 |
| 23817 | | |
| 23818 | | > ui mousemode right "rotate selected models" |
| 23819 | | |
| 23820 | | > view matrix models |
| 23821 | | > #37,-0.92877,0.12598,-0.3486,163.85,0.19226,-0.64034,-0.74364,230.44,-0.31691,-0.75769,0.57051,297.42 |
| 23822 | | |
| 23823 | | > ui mousemode right "translate selected models" |
| 23824 | | |
| 23825 | | > view matrix models |
| 23826 | | > #37,-0.92877,0.12598,-0.3486,336.71,0.19226,-0.64034,-0.74364,370.23,-0.31691,-0.75769,0.57051,333.6 |
| 23827 | | |
| 23828 | | > view matrix models |
| 23829 | | > #37,-0.92877,0.12598,-0.3486,339.32,0.19226,-0.64034,-0.74364,351.83,-0.31691,-0.75769,0.57051,326.89 |
| 23830 | | |
| 23831 | | > ui mousemode right "rotate selected models" |
| 23832 | | |
| 23833 | | > view matrix models |
| 23834 | | > #37,0.63887,-0.75644,0.14015,209.6,0.57739,0.35108,-0.73713,189,0.50839,0.55186,0.66106,66.313 |
| 23835 | | |
| 23836 | | > ui mousemode right "translate selected models" |
| 23837 | | |
| 23838 | | > view matrix models |
| 23839 | | > #37,0.63887,-0.75644,0.14015,238.84,0.57739,0.35108,-0.73713,187.7,0.50839,0.55186,0.66106,80.453 |
| 23840 | | |
| 23841 | | > view matrix models |
| 23842 | | > #37,0.63887,-0.75644,0.14015,230.99,0.57739,0.35108,-0.73713,188.41,0.50839,0.55186,0.66106,73.947 |
| 23843 | | |
| 23844 | | > ui mousemode right "rotate selected models" |
| 23845 | | |
| 23846 | | > view matrix models |
| 23847 | | > #37,0.53263,-0.77516,-0.33975,301.9,0.65601,0.63176,-0.41296,107.7,0.53475,-0.0029237,0.845,115.54 |
| 23848 | | |
| 23849 | | > view matrix models |
| 23850 | | > #37,0.6883,-0.50769,-0.51817,273.39,0.57831,0.81525,-0.030575,49.438,0.43796,-0.27862,0.85473,158.28 |
| 23851 | | |
| 23852 | | > ui mousemode right "translate selected models" |
| 23853 | | |
| 23854 | | > view matrix models |
| 23855 | | > #37,0.6883,-0.50769,-0.51817,271.67,0.57831,0.81525,-0.030575,58.164,0.43796,-0.27862,0.85473,149.69 |
| 23856 | | |
| 23857 | | > fitmap #37 inMap #19 |
| 23858 | | |
| 23859 | | Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage3_postprocess.mrc |
| 23860 | | using 93502 points |
| 23861 | | correlation = 0.8126, correlation about mean = 0.06345, overlap = 7612 |
| 23862 | | steps = 180, shift = 34.6, angle = 32.7 degrees |
| 23863 | | |
| 23864 | | Position of emd_3720_2017_leaf.map (#37) relative to |
| 23865 | | COPI_golph_linkage3_postprocess.mrc (#19) coordinates: |
| 23866 | | Matrix rotation and translation |
| 23867 | | 0.53128525 -0.28140419 -0.79909177 250.52694837 |
| 23868 | | 0.67839952 0.70628678 0.20231920 51.77405293 |
| 23869 | | 0.50745449 -0.64959268 0.56614422 275.41479911 |
| 23870 | | Axis -0.46516877 -0.71341241 0.52408086 |
| 23871 | | Axis point -192.25802356 0.00000000 420.96828822 |
| 23872 | | Rotation angle (degrees) 66.30560952 |
| 23873 | | Shift along axis -9.13393909 |
| 23874 | | |
| 23875 | | |
| 23876 | | > view matrix models |
| 23877 | | > #37,0.61278,-0.057933,-0.78813,278.4,0.19994,0.97623,0.083696,78.478,0.76454,-0.20887,0.60979,125.69 |
| 23878 | | |
| 23879 | | > view matrix models |
| 23880 | | > #37,0.61278,-0.057933,-0.78813,290.82,0.19994,0.97623,0.083696,69.562,0.76454,-0.20887,0.60979,135.95 |
| 23881 | | |
| 23882 | | > fitmap #37 inMap #19 |
| 23883 | | |
| 23884 | | Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage3_postprocess.mrc |
| 23885 | | using 93502 points |
| 23886 | | correlation = 0.8127, correlation about mean = 0.06331, overlap = 7612 |
| 23887 | | steps = 88, shift = 19.4, angle = 0.0108 degrees |
| 23888 | | |
| 23889 | | Position of emd_3720_2017_leaf.map (#37) relative to |
| 23890 | | COPI_golph_linkage3_postprocess.mrc (#19) coordinates: |
| 23891 | | Matrix rotation and translation |
| 23892 | | 0.53122006 -0.28153083 -0.79909050 250.54765948 |
| 23893 | | 0.67853284 0.70616928 0.20228226 51.80360254 |
| 23894 | | 0.50734447 -0.64966555 0.56615921 275.39206228 |
| 23895 | | Axis -0.46516969 -0.71332299 0.52420174 |
| 23896 | | Axis point -192.24664318 0.00000000 421.00099641 |
| 23897 | | Rotation angle (degrees) 66.31085613 |
| 23898 | | Shift along axis -9.13887938 |
| 23899 | | |
| 23900 | | |
| 23901 | | > select subtract #37 |
| 23902 | | |
| 23903 | | Nothing selected |
| 23904 | | |
| 23905 | | > hide #!37 models |
| 23906 | | |
| 23907 | | > open "/Users/becca/Desktop/Postdoc/Structure files/COPI |
| 23908 | | > structures/5a1x_COPI_coat_linkage3_2015.cif.gz" |
| 23909 | | |
| 23910 | | File reader requires uncompressed file; |
| 23911 | | '/Users/becca/Desktop/Postdoc/Structure files/COPI |
| 23912 | | structures/5a1x_COPI_coat_linkage3_2015.cif.gz' is compressed |
| 23913 | | |
| 23914 | | > open "/Users/becca/Desktop/Postdoc/Structure files/COPI |
| 23915 | | > structures/5a1x_COPI_coat_linkage3_2015.cif" |
| 23916 | | |
| 23917 | | 5a1x_COPI_coat_linkage3_2015.cif title: |
| 23918 | | The structure of the COPI coat linkage III [more info...] |
| 23919 | | |
| 23920 | | Chain information for 5a1x_COPI_coat_linkage3_2015.cif #60 |
| 23921 | | --- |
| 23922 | | Chain | Description | UniProt |
| 23923 | | A B I J | ADP-RIBOSYLATION FACTOR 1 | ARF1_YEAST 1-181 |
| 23924 | | C K | COATOMER SUBUNIT ALPHA | COPA_MOUSE 1-1224 |
| 23925 | | D L | COATOMER SUBUNIT BETA' | COPB2_MOUSE 1-905 |
| 23926 | | E M | COATOMER SUBUNIT GAMMA-1 | COPG1_MOUSE 1-874 |
| 23927 | | F N | COATOMER SUBUNIT ZETA-1 | COPZ1_MOUSE 1-177 |
| 23928 | | G O | COATOMER SUBUNIT BETA | COPB_MOUSE 1-968 |
| 23929 | | H P Q | COATOMER SUBUNIT DELTA | COPD_MOUSE 1-511 |
| 23930 | | |
| 23931 | | |
| 23932 | | > hide #!60 atoms |
| 23933 | | |
| 23934 | | > show #!60 cartoons |
| 23935 | | |
| 23936 | | > hide #60.1 models |
| 23937 | | |
| 23938 | | > show #60.1 models |
| 23939 | | |
| 23940 | | > hide #60.1 models |
| 23941 | | |
| 23942 | | > show #60.1 models |
| 23943 | | |
| 23944 | | > hide #60.1 models |
| 23945 | | |
| 23946 | | > show #60.1 models |
| 23947 | | |
| 23948 | | > select add #60 |
| 23949 | | |
| 23950 | | 32592 atoms, 32570 bonds, 5 pseudobonds, 8151 residues, 2 models selected |
| 23951 | | |
| 23952 | | > view matrix models #60,1,0,0,278.7,0,1,0,292.71,0,0,1,295.39 |
| 23953 | | |
| 23954 | | > hide #!19 models |
| 23955 | | |
| 23956 | | > view matrix models #60,1,0,0,283.2,0,1,0,309.7,0,0,1,307.52 |
| 23957 | | |
| 23958 | | > ui mousemode right "rotate selected models" |
| 23959 | | |
| 23960 | | > view matrix models |
| 23961 | | > #60,0.30395,-0.95232,-0.026433,298.99,0.90553,0.29742,-0.30259,232.3,0.29602,0.068037,0.95276,290.94 |
| 23962 | | |
| 23963 | | > view matrix models |
| 23964 | | > #60,0.30764,-0.9412,-0.1396,298.51,0.87798,0.33735,-0.33961,234.95,0.36674,-0.018089,0.93015,284.01 |
| 23965 | | |
| 23966 | | > ui mousemode right "translate selected models" |
| 23967 | | |
| 23968 | | > view matrix models |
| 23969 | | > #60,0.30764,-0.9412,-0.1396,472.74,0.87798,0.33735,-0.33961,184.2,0.36674,-0.018089,0.93015,328.4 |
| 23970 | | |
| 23971 | | > select subtract #60 |
| 23972 | | |
| 23973 | | Nothing selected |
| 23974 | | |
| 23975 | | > show #50 models |
| 23976 | | |
| 23977 | | > hide #50 models |
| 23978 | | |
| 23979 | | > show #50 models |
| 23980 | | |
| 23981 | | > hide #50 models |
| 23982 | | |
| 23983 | | > show #50 models |
| 23984 | | |
| 23985 | | > hide #50 models |
| 23986 | | |
| 23987 | | > show #50 models |
| 23988 | | |
| 23989 | | > hide #50 models |
| 23990 | | |
| 23991 | | > show #50 models |
| 23992 | | |
| 23993 | | > hide #50 models |
| 23994 | | |
| 23995 | | > show #50 models |
| 23996 | | |
| 23997 | | > select add #60 |
| 23998 | | |
| 23999 | | 32592 atoms, 32570 bonds, 5 pseudobonds, 8151 residues, 2 models selected |
| 24000 | | |
| 24001 | | > ui mousemode right "rotate selected models" |
| 24002 | | |
| 24003 | | > view matrix models |
| 24004 | | > #60,0.71806,0.1644,-0.67629,476.17,-0.57073,0.69522,-0.43697,283.37,0.39833,0.69975,0.59303,345.19 |
| 24005 | | |
| 24006 | | > ui mousemode right "translate selected models" |
| 24007 | | |
| 24008 | | > view matrix models |
| 24009 | | > #60,0.71806,0.1644,-0.67629,301.94,-0.57073,0.69522,-0.43697,317.81,0.39833,0.69975,0.59303,291 |
| 24010 | | |
| 24011 | | > view matrix models |
| 24012 | | > #60,0.71806,0.1644,-0.67629,271.07,-0.57073,0.69522,-0.43697,408.75,0.39833,0.69975,0.59303,320.31 |
| 24013 | | |
| 24014 | | > ui mousemode right "rotate selected models" |
| 24015 | | |
| 24016 | | > view matrix models |
| 24017 | | > #60,0.39633,0.84407,-0.3612,311.83,-0.91749,0.34975,-0.18942,421.58,-0.033549,0.40647,0.91305,340.24 |
| 24018 | | |
| 24019 | | > view matrix models |
| 24020 | | > #60,0.36213,0.89583,-0.2576,315.92,-0.93213,0.34741,-0.10221,422.85,-0.0020647,0.27713,0.96083,334.85 |
| 24021 | | |
| 24022 | | > ui mousemode right "translate selected models" |
| 24023 | | |
| 24024 | | > view matrix models |
| 24025 | | > #60,0.36213,0.89583,-0.2576,282.84,-0.93213,0.34741,-0.10221,406.37,-0.0020647,0.27713,0.96083,302.27 |
| 24026 | | |
| 24027 | | > ui mousemode right "rotate selected models" |
| 24028 | | |
| 24029 | | > view matrix models |
| 24030 | | > #60,-0.29442,0.93069,-0.21709,324.59,-0.93376,-0.32852,-0.14204,387.06,-0.20351,0.16089,0.96576,311.43 |
| 24031 | | |
| 24032 | | > ui mousemode right "translate selected models" |
| 24033 | | |
| 24034 | | > view matrix models |
| 24035 | | > #60,-0.29442,0.93069,-0.21709,308,-0.93376,-0.32852,-0.14204,396.26,-0.20351,0.16089,0.96576,298.11 |
| 24036 | | |
| 24037 | | > view matrix models |
| 24038 | | > #60,-0.29442,0.93069,-0.21709,313.22,-0.93376,-0.32852,-0.14204,387.45,-0.20351,0.16089,0.96576,306.51 |
| 24039 | | |
| 24040 | | > hide #50 models |
| 24041 | | |
| 24042 | | > select subtract #60 |
| 24043 | | |
| 24044 | | Nothing selected |
| 24045 | | |
| 24046 | | > select add #60 |
| 24047 | | |
| 24048 | | 32592 atoms, 32570 bonds, 5 pseudobonds, 8151 residues, 2 models selected |
| 24049 | | |
| 24050 | | > view matrix models |
| 24051 | | > #60,-0.29442,0.93069,-0.21709,185.5,-0.93376,-0.32852,-0.14204,270.05,-0.20351,0.16089,0.96576,181.41 |
| 24052 | | |
| 24053 | | > select subtract #60 |
| 24054 | | |
| 24055 | | Nothing selected |
| 24056 | | |
| 24057 | | > show #!56 models |
| 24058 | | |
| 24059 | | > hide #!56 models |
| 24060 | | |
| 24061 | | > show #!56 models |
| 24062 | | |
| 24063 | | > hide #!56 models |
| 24064 | | |
| 24065 | | > show #!56 models |
| 24066 | | |
| 24067 | | > hide #!56 models |
| 24068 | | |
| 24069 | | > show #54 models |
| 24070 | | |
| 24071 | | > hide #54 models |
| 24072 | | |
| 24073 | | > show #54 models |
| 24074 | | |
| 24075 | | > hide #54 models |
| 24076 | | |
| 24077 | | > show #54 models |
| 24078 | | |
| 24079 | | > hide #!25 models |
| 24080 | | |
| 24081 | | > show #!25 models |
| 24082 | | |
| 24083 | | > hide #!2 models |
| 24084 | | |
| 24085 | | > show #!2 models |
| 24086 | | |
| 24087 | | > select add #60 |
| 24088 | | |
| 24089 | | 32592 atoms, 32570 bonds, 5 pseudobonds, 8151 residues, 2 models selected |
| 24090 | | |
| 24091 | | > ui mousemode right "rotate selected models" |
| 24092 | | |
| 24093 | | > view matrix models |
| 24094 | | > #60,0.69872,0.078126,-0.71112,97.473,0.24248,0.90932,0.33815,234.97,0.67305,-0.40871,0.61641,109.34 |
| 24095 | | |
| 24096 | | > view matrix models |
| 24097 | | > #60,0.69338,0.088487,-0.71511,98.077,0.24277,0.90572,0.34747,234.9,0.67844,-0.41454,0.60653,108.79 |
| 24098 | | |
| 24099 | | > ui mousemode right "translate selected models" |
| 24100 | | |
| 24101 | | > view matrix models |
| 24102 | | > #60,0.69338,0.088487,-0.71511,288.6,0.24277,0.90572,0.34747,273.74,0.67844,-0.41454,0.60653,261.75 |
| 24103 | | |
| 24104 | | > view matrix models |
| 24105 | | > #60,0.69338,0.088487,-0.71511,293.77,0.24277,0.90572,0.34747,295.88,0.67844,-0.41454,0.60653,304.94 |
| 24106 | | |
| 24107 | | > select subtract #60 |
| 24108 | | |
| 24109 | | Nothing selected |
| 24110 | | |
| 24111 | | > hide #!25 models |
| 24112 | | |
| 24113 | | > hide #!2 models |
| 24114 | | |
| 24115 | | > select add #60 |
| 24116 | | |
| 24117 | | 32592 atoms, 32570 bonds, 5 pseudobonds, 8151 residues, 2 models selected |
| 24118 | | |
| 24119 | | > ui mousemode right "rotate selected models" |
| 24120 | | |
| 24121 | | > view matrix models |
| 24122 | | > #60,0.86942,-0.22536,0.43968,279.7,0.40591,0.83316,-0.3756,280.16,-0.28168,0.50503,0.81585,391.43 |
| 24123 | | |
| 24124 | | > ui mousemode right "translate selected models" |
| 24125 | | |
| 24126 | | > view matrix models |
| 24127 | | > #60,0.86942,-0.22536,0.43968,269.02,0.40591,0.83316,-0.3756,273.58,-0.28168,0.50503,0.81585,316.65 |
| 24128 | | |
| 24129 | | > ui mousemode right "rotate selected models" |
| 24130 | | |
| 24131 | | > view matrix models |
| 24132 | | > #60,0.099844,-0.98449,-0.14427,292.07,0.84964,0.15982,-0.50257,226.4,0.51783,-0.072399,0.85242,251.03 |
| 24133 | | |
| 24134 | | > ui mousemode right "translate selected models" |
| 24135 | | |
| 24136 | | > view matrix models |
| 24137 | | > #60,0.099844,-0.98449,-0.14427,298.05,0.84964,0.15982,-0.50257,272.51,0.51783,-0.072399,0.85242,290.42 |
| 24138 | | |
| 24139 | | > view matrix models |
| 24140 | | > #60,0.099844,-0.98449,-0.14427,300.25,0.84964,0.15982,-0.50257,276.15,0.51783,-0.072399,0.85242,305.68 |
| 24141 | | |
| 24142 | | > ui mousemode right "rotate selected models" |
| 24143 | | |
| 24144 | | > view matrix models |
| 24145 | | > #60,-0.29969,-0.86037,-0.41226,327.13,0.79371,0.014914,-0.60811,274.96,0.52934,-0.50946,0.67841,291.68 |
| 24146 | | |
| 24147 | | > ui mousemode right "translate selected models" |
| 24148 | | |
| 24149 | | > view matrix models |
| 24150 | | > #60,-0.29969,-0.86037,-0.41226,330,0.79371,0.014914,-0.60811,274.56,0.52934,-0.50946,0.67841,304.12 |
| 24151 | | |
| 24152 | | > view matrix models |
| 24153 | | > #60,-0.29969,-0.86037,-0.41226,326.7,0.79371,0.014914,-0.60811,276.86,0.52934,-0.50946,0.67841,295.37 |
| 24154 | | |
| 24155 | | > ui mousemode right "rotate selected models" |
| 24156 | | |
| 24157 | | > view matrix models |
| 24158 | | > #60,-0.16482,-0.96487,0.20459,318.46,-0.25356,-0.15901,-0.95416,334.88,0.95317,-0.20914,-0.21845,273.29 |
| 24159 | | |
| 24160 | | > view matrix models |
| 24161 | | > #60,-0.22265,-0.9332,-0.28208,320.52,0.95497,-0.15056,-0.25568,263.94,0.19613,-0.3263,0.92469,322.38 |
| 24162 | | |
| 24163 | | > ui mousemode right "translate selected models" |
| 24164 | | |
| 24165 | | > view matrix models |
| 24166 | | > #60,-0.22265,-0.9332,-0.28208,318.22,0.95497,-0.15056,-0.25568,248.03,0.19613,-0.3263,0.92469,316.64 |
| 24167 | | |
| 24168 | | > view matrix models |
| 24169 | | > #60,-0.22265,-0.9332,-0.28208,324.94,0.95497,-0.15056,-0.25568,247.07,0.19613,-0.3263,0.92469,301.89 |
| 24170 | | |
| 24171 | | > ui mousemode right "rotate selected models" |
| 24172 | | |
| 24173 | | > view matrix models |
| 24174 | | > #60,-0.10757,-0.99405,0.01717,317.59,0.87094,-0.10255,-0.48057,252.51,0.47948,-0.03674,0.87679,292.39 |
| 24175 | | |
| 24176 | | > ui mousemode right "translate selected models" |
| 24177 | | |
| 24178 | | > view matrix models |
| 24179 | | > #60,-0.10757,-0.99405,0.01717,309.12,0.87094,-0.10255,-0.48057,265.96,0.47948,-0.03674,0.87679,287.59 |
| 24180 | | |
| 24181 | | > view matrix models |
| 24182 | | > #60,-0.10757,-0.99405,0.01717,308.58,0.87094,-0.10255,-0.48057,269.36,0.47948,-0.03674,0.87679,297.99 |
| 24183 | | |
| 24184 | | > view matrix models |
| 24185 | | > #60,-0.10757,-0.99405,0.01717,306.6,0.87094,-0.10255,-0.48057,265.23,0.47948,-0.03674,0.87679,295.2 |
| 24186 | | |
| 24187 | | > hide #54 models |
| 24188 | | |
| 24189 | | > show #54 models |
| 24190 | | |
| 24191 | | > hide #54 models |
| 24192 | | |
| 24193 | | > show #54 models |
| 24194 | | |
| 24195 | | > view matrix models |
| 24196 | | > #60,-0.10757,-0.99405,0.01717,195.57,0.87094,-0.10255,-0.48057,229.02,0.47948,-0.03674,0.87679,322.68 |
| 24197 | | |
| 24198 | | > view matrix models |
| 24199 | | > #60,-0.10757,-0.99405,0.01717,177.13,0.87094,-0.10255,-0.48057,181.04,0.47948,-0.03674,0.87679,302.25 |
| 24200 | | |
| 24201 | | > ui mousemode right "rotate selected models" |
| 24202 | | |
| 24203 | | > view matrix models |
| 24204 | | > #60,0.67938,-0.71254,0.17532,137.31,0.73214,0.64222,-0.22698,212.05,0.049136,0.28257,0.95799,338.31 |
| 24205 | | |
| 24206 | | > view matrix models |
| 24207 | | > #60,0.35741,-0.93101,0.074016,150.48,0.88939,0.31509,-0.33122,192.52,0.28505,0.18421,0.94065,320.86 |
| 24208 | | |
| 24209 | | > view matrix models |
| 24210 | | > #60,0.0062061,-0.99848,0.054808,170.16,0.81786,-0.026469,-0.57481,186.02,0.57538,0.048393,0.81645,298.45 |
| 24211 | | |
| 24212 | | > ui mousemode right "translate selected models" |
| 24213 | | |
| 24214 | | > view matrix models |
| 24215 | | > #60,0.0062061,-0.99848,0.054808,300.16,0.81786,-0.026469,-0.57481,269.53,0.57538,0.048393,0.81645,290.76 |
| 24216 | | |
| 24217 | | > ui mousemode right "rotate selected models" |
| 24218 | | |
| 24219 | | > view matrix models |
| 24220 | | > #60,-0.1471,-0.98798,0.047428,309.89,0.96301,-0.15399,-0.22113,258.69,0.22577,0.013147,0.97409,312.14 |
| 24221 | | |
| 24222 | | > view matrix models |
| 24223 | | > #60,-0.25612,-0.79759,-0.54612,319.1,0.75336,0.1893,-0.62977,279.38,0.60569,-0.57273,0.55239,269.92 |
| 24224 | | |
| 24225 | | > ui mousemode right "translate selected models" |
| 24226 | | |
| 24227 | | > view matrix models |
| 24228 | | > #60,-0.25612,-0.79759,-0.54612,334.29,0.75336,0.1893,-0.62977,287.43,0.60569,-0.57273,0.55239,310.88 |
| 24229 | | |
| 24230 | | > ui mousemode right "rotate selected models" |
| 24231 | | |
| 24232 | | > view matrix models |
| 24233 | | > #60,-0.28394,-0.86187,0.4202,338.97,-0.030703,-0.42984,-0.90238,316.9,0.95835,-0.26912,0.095586,295.47 |
| 24234 | | |
| 24235 | | > ui mousemode right "translate selected models" |
| 24236 | | |
| 24237 | | > view matrix models |
| 24238 | | > #60,-0.28394,-0.86187,0.4202,331.17,-0.030703,-0.42984,-0.90238,321.67,0.95835,-0.26912,0.095586,273.13 |
| 24239 | | |
| 24240 | | > view matrix models |
| 24241 | | > #60,-0.28394,-0.86187,0.4202,309.08,-0.030703,-0.42984,-0.90238,343.32,0.95835,-0.26912,0.095586,285.64 |
| 24242 | | |
| 24243 | | > ui mousemode right "rotate selected models" |
| 24244 | | |
| 24245 | | > view matrix models |
| 24246 | | > #60,0.38051,-0.71783,-0.58304,267.17,0.76466,0.5988,-0.2382,326.73,0.52011,-0.35519,0.77674,313.64 |
| 24247 | | |
| 24248 | | > view matrix models |
| 24249 | | > #60,0.089963,-0.91854,-0.38495,280.39,0.93121,0.21466,-0.29458,305.24,0.35322,-0.33196,0.87466,325.09 |
| 24250 | | |
| 24251 | | > ui mousemode right "translate selected models" |
| 24252 | | |
| 24253 | | > view matrix models |
| 24254 | | > #60,0.089963,-0.91854,-0.38495,279.17,0.93121,0.21466,-0.29458,308.48,0.35322,-0.33196,0.87466,312.14 |
| 24255 | | |
| 24256 | | > view matrix models |
| 24257 | | > #60,0.089963,-0.91854,-0.38495,313.17,0.93121,0.21466,-0.29458,275.27,0.35322,-0.33196,0.87466,284.81 |
| 24258 | | |
| 24259 | | > ui mousemode right "rotate selected models" |
| 24260 | | |
| 24261 | | > view matrix models |
| 24262 | | > #60,-0.58428,0.80232,0.12208,406.26,0.81034,0.56857,0.1417,294.96,0.044277,0.18172,-0.98235,309.3 |
| 24263 | | |
| 24264 | | > view matrix models |
| 24265 | | > #60,-0.98665,0.015404,0.16213,408.94,0.13439,0.63936,0.75708,341.77,-0.091998,0.76876,-0.63289,336.14 |
| 24266 | | |
| 24267 | | > view matrix models |
| 24268 | | > #60,-0.93577,-0.24632,-0.25233,396.3,-0.29531,0.93848,0.17903,373.95,0.19271,0.24204,-0.95094,302.01 |
| 24269 | | |
| 24270 | | > view matrix models |
| 24271 | | > #60,-0.93453,-0.24826,-0.255,396.15,-0.29745,0.93826,0.17664,374.07,0.1954,0.24092,-0.95067,301.81 |
| 24272 | | |
| 24273 | | > ui mousemode right "translate selected models" |
| 24274 | | |
| 24275 | | > view matrix models |
| 24276 | | > #60,-0.93453,-0.24826,-0.255,320.41,-0.29745,0.93826,0.17664,311,0.1954,0.24092,-0.95067,315.49 |
| 24277 | | |
| 24278 | | > view matrix models |
| 24279 | | > #60,-0.93453,-0.24826,-0.255,321.63,-0.29745,0.93826,0.17664,283.92,0.1954,0.24092,-0.95067,330.32 |
| 24280 | | |
| 24281 | | > view matrix models |
| 24282 | | > #60,-0.93453,-0.24826,-0.255,330.19,-0.29745,0.93826,0.17664,277.68,0.1954,0.24092,-0.95067,357.4 |
| 24283 | | |
| 24284 | | > ui mousemode right "rotate selected models" |
| 24285 | | |
| 24286 | | > view matrix models |
| 24287 | | > #60,-0.86274,-0.40741,-0.29951,321.01,-0.50398,0.74096,0.44383,286.15,0.041104,0.53386,-0.84457,375.79 |
| 24288 | | |
| 24289 | | > view matrix models |
| 24290 | | > #60,-0.91726,-0.29906,-0.26304,327.64,-0.36609,0.89321,0.26108,281.05,0.15687,0.33578,-0.92879,362.59 |
| 24291 | | |
| 24292 | | > view matrix models |
| 24293 | | > #60,0.46859,-0.5126,0.71949,240.83,-0.34056,0.64667,0.68252,274.55,-0.81514,-0.56485,0.12845,402.25 |
| 24294 | | |
| 24295 | | > view matrix models |
| 24296 | | > #60,-0.511,0.62905,-0.58581,327.33,-0.84789,-0.25685,0.4638,279.12,0.14129,0.73371,0.66462,382.76 |
| 24297 | | |
| 24298 | | > view matrix models |
| 24299 | | > #60,-0.076799,0.98714,0.14022,314.29,0.81552,0.1431,-0.56076,182.67,-0.57362,0.071289,-0.81602,400.74 |
| 24300 | | |
| 24301 | | > view matrix models |
| 24302 | | > #60,0.37987,-0.2661,-0.88594,245.37,0.91291,0.26241,0.31262,184.37,0.14929,-0.92754,0.34261,333.43 |
| 24303 | | |
| 24304 | | > view matrix models |
| 24305 | | > #60,0.24379,-0.61027,-0.75375,244.64,0.96341,0.063127,0.26049,175.33,-0.11139,-0.78967,0.60333,354.74 |
| 24306 | | |
| 24307 | | > ui mousemode right "translate selected models" |
| 24308 | | |
| 24309 | | > view matrix models |
| 24310 | | > #60,0.24379,-0.61027,-0.75375,254.27,0.96341,0.063127,0.26049,213.46,-0.11139,-0.78967,0.60333,338.98 |
| 24311 | | |
| 24312 | | > view matrix models |
| 24313 | | > #60,0.24379,-0.61027,-0.75375,186.67,0.96341,0.063127,0.26049,196.79,-0.11139,-0.78967,0.60333,285.3 |
| 24314 | | |
| 24315 | | > view matrix models |
| 24316 | | > #60,0.24379,-0.61027,-0.75375,184.49,0.96341,0.063127,0.26049,192.05,-0.11139,-0.78967,0.60333,302.12 |
| 24317 | | |
| 24318 | | > ui mousemode right "rotate selected models" |
| 24319 | | |
| 24320 | | > view matrix models |
| 24321 | | > #60,0.1646,-0.7403,-0.65181,186.19,0.97953,0.20033,0.019833,193.76,0.11589,-0.64173,0.75812,293.05 |
| 24322 | | |
| 24323 | | > view matrix models |
| 24324 | | > #60,0.17244,0.13692,-0.97546,209.04,0.54681,0.81038,0.21041,238.78,0.8193,-0.56968,0.064879,248.22 |
| 24325 | | |
| 24326 | | > hide #54 models |
| 24327 | | |
| 24328 | | > show #54 models |
| 24329 | | |
| 24330 | | > select subtract #60 |
| 24331 | | |
| 24332 | | Nothing selected |
| 24333 | | |
| 24334 | | > select add #60 |
| 24335 | | |
| 24336 | | 32592 atoms, 32570 bonds, 5 pseudobonds, 8151 residues, 2 models selected |
| 24337 | | |
| 24338 | | > ui mousemode right "translate selected models" |
| 24339 | | |
| 24340 | | > view matrix models |
| 24341 | | > #60,0.17244,0.13692,-0.97546,247.1,0.54681,0.81038,0.21041,312.98,0.8193,-0.56968,0.064879,179.83 |
| 24342 | | |
| 24343 | | > view matrix models |
| 24344 | | > #60,0.17244,0.13692,-0.97546,243.27,0.54681,0.81038,0.21041,317.9,0.8193,-0.56968,0.064879,170.53 |
| 24345 | | |
| 24346 | | > ui mousemode right "rotate selected models" |
| 24347 | | |
| 24348 | | > view matrix models |
| 24349 | | > #60,0.33024,0.062073,-0.94185,231.57,0.32582,0.92901,0.17547,334.75,0.88588,-0.36482,0.28657,173.34 |
| 24350 | | |
| 24351 | | > view matrix models |
| 24352 | | > #60,0.091972,0.19299,-0.97688,249.83,0.65733,0.72514,0.20514,308.62,0.74797,-0.661,-0.060164,171.72 |
| 24353 | | |
| 24354 | | > view matrix models |
| 24355 | | > #60,0.42223,0.037289,-0.90572,225.36,0.1947,0.97211,0.13079,343.85,0.88533,-0.23156,0.40319,177.74 |
| 24356 | | |
| 24357 | | > ui mousemode right "translate selected models" |
| 24358 | | |
| 24359 | | > view matrix models |
| 24360 | | > #60,0.42223,0.037289,-0.90572,209.96,0.1947,0.97211,0.13079,368.39,0.88533,-0.23156,0.40319,222.12 |
| 24361 | | |
| 24362 | | > view matrix models |
| 24363 | | > #60,0.42223,0.037289,-0.90572,213.37,0.1947,0.97211,0.13079,374.19,0.88533,-0.23156,0.40319,214.42 |
| 24364 | | |
| 24365 | | > view matrix models |
| 24366 | | > #60,0.42223,0.037289,-0.90572,223.35,0.1947,0.97211,0.13079,376.8,0.88533,-0.23156,0.40319,223.94 |
| 24367 | | |
| 24368 | | > view matrix models |
| 24369 | | > #60,0.42223,0.037289,-0.90572,220.66,0.1947,0.97211,0.13079,374.3,0.88533,-0.23156,0.40319,226.27 |
| 24370 | | |
| 24371 | | > view matrix models |
| 24372 | | > #60,0.42223,0.037289,-0.90572,219.31,0.1947,0.97211,0.13079,377.5,0.88533,-0.23156,0.40319,221.97 |
| 24373 | | |
| 24374 | | > ui mousemode right "rotate selected models" |
| 24375 | | |
| 24376 | | > view matrix models |
| 24377 | | > #60,0.46204,0.027203,-0.88644,216.66,0.10583,0.9907,0.085565,383.3,0.88052,-0.13335,0.45486,225.31 |
| 24378 | | |
| 24379 | | > ui mousemode right "translate selected models" |
| 24380 | | |
| 24381 | | > view matrix models |
| 24382 | | > #60,0.46204,0.027203,-0.88644,216.5,0.10583,0.9907,0.085565,383.3,0.88052,-0.13335,0.45486,234.52 |
| 24383 | | |
| 24384 | | > select subtract #60 |
| 24385 | | |
| 24386 | | Nothing selected |
| 24387 | | |
| 24388 | | > hide #54 models |
| 24389 | | |
| 24390 | | > show #!1 models |
| 24391 | | |
| 24392 | | > hide #!1 models |
| 24393 | | |
| 24394 | | > show #!2 models |
| 24395 | | |
| 24396 | | > show #!25 models |
| 24397 | | |
| 24398 | | > show #!19 models |
| 24399 | | |
| 24400 | | > hide #!25 models |
| 24401 | | |
| 24402 | | > show #!25 models |
| 24403 | | |
| 24404 | | > hide #!19 models |
| 24405 | | |
| 24406 | | > show #30 models |
| 24407 | | |
| 24408 | | > hide #30 models |
| 24409 | | |
| 24410 | | > show #30 models |
| 24411 | | |
| 24412 | | > hide #30 models |
| 24413 | | |
| 24414 | | > hide #!25 models |
| 24415 | | |
| 24416 | | > show #!25 models |
| 24417 | | |
| 24418 | | > hide #!25 models |
| 24419 | | |
| 24420 | | > show #!25 models |
| 24421 | | |
| 24422 | | > hide #!25 models |
| 24423 | | |
| 24424 | | > show #!25 models |
| 24425 | | |
| 24426 | | > hide #!60 models |
| 24427 | | |
| 24428 | | > hide #!25 models |
| 24429 | | |
| 24430 | | > show #!1 models |
| 24431 | | |
| 24432 | | > surface dust #2 size 17.8 |
| 24433 | | |
| 24434 | | > surface dust #1 size 25.5 |
| 24435 | | |
| 24436 | | > fitmap #2 inMap #1 |
| 24437 | | |
| 24438 | | Fit map emdb 3720 in map postprocess_20231221.mrc using 59756 points |
| 24439 | | correlation = 0.7167, correlation about mean = 0.2039, overlap = 49.32 |
| 24440 | | steps = 88, shift = 2.05, angle = 2.09 degrees |
| 24441 | | |
| 24442 | | Position of emdb 3720 (#2) relative to postprocess_20231221.mrc (#1) |
| 24443 | | coordinates: |
| 24444 | | Matrix rotation and translation |
| 24445 | | -0.53789413 0.84247923 -0.02997756 166.41351370 |
| 24446 | | -0.84288398 -0.53809272 0.00168124 370.29314647 |
| 24447 | | -0.01471430 0.02617193 0.99954916 111.75105961 |
| 24448 | | Axis 0.01452927 -0.00905503 -0.99985344 |
| 24449 | | Axis point 185.19765373 138.59553433 0.00000000 |
| 24450 | | Rotation angle (degrees) 122.56246994 |
| 24451 | | Shift along axis -112.66983142 |
| 24452 | | |
| 24453 | | |
| 24454 | | > fitmap #2 inMap #1 |
| 24455 | | |
| 24456 | | Fit map emdb 3720 in map postprocess_20231221.mrc using 59756 points |
| 24457 | | correlation = 0.7166, correlation about mean = 0.2038, overlap = 49.31 |
| 24458 | | steps = 60, shift = 0.0304, angle = 0.00646 degrees |
| 24459 | | |
| 24460 | | Position of emdb 3720 (#2) relative to postprocess_20231221.mrc (#1) |
| 24461 | | coordinates: |
| 24462 | | Matrix rotation and translation |
| 24463 | | -0.53786301 0.84250231 -0.02988718 166.41268452 |
| 24464 | | -0.84290388 -0.53806172 0.00162510 370.29411574 |
| 24465 | | -0.01471200 0.02606610 0.99955196 111.78773883 |
| 24466 | | Axis 0.01449944 -0.00900256 -0.99985435 |
| 24467 | | Axis point 185.20219904 138.59778405 0.00000000 |
| 24468 | | Rotation angle (degrees) 122.56026340 |
| 24469 | | Shift along axis -112.69216210 |
| 24470 | | |
| 24471 | | |
| 24472 | | > fitmap #2 inMap #1 |
| 24473 | | |
| 24474 | | Fit map emdb 3720 in map postprocess_20231221.mrc using 59756 points |
| 24475 | | correlation = 0.7166, correlation about mean = 0.2039, overlap = 49.31 |
| 24476 | | steps = 64, shift = 0.0403, angle = 0.0199 degrees |
| 24477 | | |
| 24478 | | Position of emdb 3720 (#2) relative to postprocess_20231221.mrc (#1) |
| 24479 | | coordinates: |
| 24480 | | Matrix rotation and translation |
| 24481 | | -0.53813091 0.84232814 -0.02997387 166.43542003 |
| 24482 | | -0.84273361 -0.53832799 0.00174126 370.29897186 |
| 24483 | | -0.01466906 0.02619701 0.99954917 111.76451127 |
| 24484 | | Axis 0.01451114 -0.00908131 -0.99985347 |
| 24485 | | Axis point 185.17478882 138.60667507 0.00000000 |
| 24486 | | Rotation angle (degrees) 122.57851683 |
| 24487 | | Shift along axis -112.69576575 |
| 24488 | | |
| 24489 | | |
| 24490 | | > fitmap #1 inMap #19 |
| 24491 | | |
| 24492 | | Fit map postprocess_20231221.mrc in map COPI_golph_linkage3_postprocess.mrc |
| 24493 | | using 19065 points |
| 24494 | | correlation = 0.8356, correlation about mean = 0.1175, overlap = 85.08 |
| 24495 | | steps = 44, shift = 0.0201, angle = 0.00901 degrees |
| 24496 | | |
| 24497 | | Position of postprocess_20231221.mrc (#1) relative to |
| 24498 | | COPI_golph_linkage3_postprocess.mrc (#19) coordinates: |
| 24499 | | Matrix rotation and translation |
| 24500 | | 0.97198715 -0.23384369 -0.02362457 67.46579987 |
| 24501 | | 0.21520905 0.84508851 0.48939808 41.67837632 |
| 24502 | | -0.09447780 -0.48077287 0.87174044 268.62322175 |
| 24503 | | Axis -0.90551614 0.06613137 0.41912666 |
| 24504 | | Axis point 0.00000000 490.75832581 77.51050191 |
| 24505 | | Rotation angle (degrees) 32.39143179 |
| 24506 | | Shift along axis 54.25203054 |
| 24507 | | |
| 24508 | | |
| 24509 | | > fitmap #1 inMap #19 |
| 24510 | | |
| 24511 | | Fit map postprocess_20231221.mrc in map COPI_golph_linkage3_postprocess.mrc |
| 24512 | | using 19065 points |
| 24513 | | correlation = 0.8357, correlation about mean = 0.1179, overlap = 85.08 |
| 24514 | | steps = 28, shift = 0.0623, angle = 0.00755 degrees |
| 24515 | | |
| 24516 | | Position of postprocess_20231221.mrc (#1) relative to |
| 24517 | | COPI_golph_linkage3_postprocess.mrc (#19) coordinates: |
| 24518 | | Matrix rotation and translation |
| 24519 | | 0.97200433 -0.23378289 -0.02351911 67.46302473 |
| 24520 | | 0.21510985 0.84513634 0.48935908 41.68304002 |
| 24521 | | -0.09452693 -0.48071834 0.87176519 268.66471165 |
| 24522 | | Axis -0.90554845 0.06628442 0.41903266 |
| 24523 | | Axis point 0.00000000 490.91186598 77.52461595 |
| 24524 | | Rotation angle (degrees) 32.38663105 |
| 24525 | | Shift along axis 54.25118840 |
| 24526 | | |
| 24527 | | |
| 24528 | | > fitmap #2 inMap #19 |
| 24529 | | |
| 24530 | | Fit map emdb 3720 in map COPI_golph_linkage3_postprocess.mrc using 59756 |
| 24531 | | points |
| 24532 | | correlation = 0.9222, correlation about mean = 0.1315, overlap = 7982 |
| 24533 | | steps = 60, shift = 2.05, angle = 2.07 degrees |
| 24534 | | |
| 24535 | | Position of emdb 3720 (#2) relative to COPI_golph_linkage3_postprocess.mrc |
| 24536 | | (#19) coordinates: |
| 24537 | | Matrix rotation and translation |
| 24538 | | -0.31624299 0.94466933 -0.08712193 142.35985490 |
| 24539 | | -0.83977736 -0.23603650 0.48893841 440.70447209 |
| 24540 | | 0.44132116 0.22778637 0.86795680 169.02922082 |
| 24541 | | Axis -0.13896370 -0.28119408 -0.94953619 |
| 24542 | | Axis point 189.74284311 158.42726910 0.00000000 |
| 24543 | | Rotation angle (degrees) 110.00860971 |
| 24544 | | Shift along axis -304.20570262 |
| 24545 | | |
| 24546 | | |
| 24547 | | > fitmap #2 inMap #19 |
| 24548 | | |
| 24549 | | Fit map emdb 3720 in map COPI_golph_linkage3_postprocess.mrc using 59756 |
| 24550 | | points |
| 24551 | | correlation = 0.9221, correlation about mean = 0.1309, overlap = 7982 |
| 24552 | | steps = 96, shift = 0.0548, angle = 0.0155 degrees |
| 24553 | | |
| 24554 | | Position of emdb 3720 (#2) relative to COPI_golph_linkage3_postprocess.mrc |
| 24555 | | (#19) coordinates: |
| 24556 | | Matrix rotation and translation |
| 24557 | | -0.31605739 0.94474379 -0.08698794 142.29294605 |
| 24558 | | -0.83986531 -0.23596231 0.48882313 440.71948710 |
| 24559 | | 0.44128675 0.22755432 0.86803517 169.10135286 |
| 24560 | | Axis -0.13901673 -0.28108605 -0.94956041 |
| 24561 | | Axis point 189.73624545 158.46025452 0.00000000 |
| 24562 | | Rotation angle (degrees) 109.99830030 |
| 24563 | | Shift along axis -304.23315163 |
| 24564 | | |
| 24565 | | |
| 24566 | | > hide #!2 models |
| 24567 | | |
| 24568 | | > show #3 models |
| 24569 | | |
| 24570 | | > show #4 models |
| 24571 | | |
| 24572 | | > show #5 models |
| 24573 | | |
| 24574 | | > show #6 models |
| 24575 | | |
| 24576 | | > show #7 models |
| 24577 | | |
| 24578 | | > show #8 models |
| 24579 | | |
| 24580 | | > show #!9 models |
| 24581 | | |
| 24582 | | > show #10 models |
| 24583 | | |
| 24584 | | > show #11 models |
| 24585 | | |
| 24586 | | > show #12 models |
| 24587 | | |
| 24588 | | > fitmap #4 inMap #1 |
| 24589 | | |
| 24590 | | Fit molecule CopB_Q9JIF7.pdb (#4) to map postprocess_20231221.mrc (#1) using |
| 24591 | | 7501 atoms |
| 24592 | | average map value = 0.002923, steps = 84 |
| 24593 | | shifted from previous position = 0.0382 |
| 24594 | | rotated from previous position = 0.0452 degrees |
| 24595 | | atoms outside contour = 5658, contour level = 0.0036898 |
| 24596 | | |
| 24597 | | Position of CopB_Q9JIF7.pdb (#4) relative to postprocess_20231221.mrc (#1) |
| 24598 | | coordinates: |
| 24599 | | Matrix rotation and translation |
| 24600 | | -0.04204199 -0.73290824 0.67902723 172.35762146 |
| 24601 | | -0.03854177 0.68031195 0.73190859 204.57850055 |
| 24602 | | -0.99837218 0.00459998 -0.05684925 236.22466685 |
| 24603 | | Axis -0.37189030 0.85769447 0.35504620 |
| 24604 | | Axis point 209.20864402 0.00000000 -39.70487813 |
| 24605 | | Rotation angle (degrees) 102.08072677 |
| 24606 | | Shift along axis 195.23839065 |
| 24607 | | |
| 24608 | | |
| 24609 | | > fitmap #5 inMap #1 |
| 24610 | | |
| 24611 | | Fit molecule hArf1_P84078 (#5) to map postprocess_20231221.mrc (#1) using 1457 |
| 24612 | | atoms |
| 24613 | | average map value = 0.002588, steps = 60 |
| 24614 | | shifted from previous position = 0.0738 |
| 24615 | | rotated from previous position = 0.0442 degrees |
| 24616 | | atoms outside contour = 1386, contour level = 0.0036898 |
| 24617 | | |
| 24618 | | Position of hArf1_P84078 (#5) relative to postprocess_20231221.mrc (#1) |
| 24619 | | coordinates: |
| 24620 | | Matrix rotation and translation |
| 24621 | | 0.15805659 0.02390284 0.98714070 126.72720553 |
| 24622 | | -0.68664804 -0.71576226 0.12727467 200.56733706 |
| 24623 | | 0.70960029 -0.69793483 -0.09671810 178.42654262 |
| 24624 | | Axis -0.73431574 0.24697036 -0.63228635 |
| 24625 | | Axis point 0.00000000 138.25648299 -15.42719634 |
| 24626 | | Rotation angle (degrees) 145.81338808 |
| 24627 | | Shift along axis -156.34026119 |
| 24628 | | |
| 24629 | | |
| 24630 | | > fitmap #6 inMap #1 |
| 24631 | | |
| 24632 | | Fit molecule hArf1_P84078 (#6) to map postprocess_20231221.mrc (#1) using 1457 |
| 24633 | | atoms |
| 24634 | | average map value = 0.003766, steps = 60 |
| 24635 | | shifted from previous position = 0.106 |
| 24636 | | rotated from previous position = 0.0911 degrees |
| 24637 | | atoms outside contour = 772, contour level = 0.0036898 |
| 24638 | | |
| 24639 | | Position of hArf1_P84078 (#6) relative to postprocess_20231221.mrc (#1) |
| 24640 | | coordinates: |
| 24641 | | Matrix rotation and translation |
| 24642 | | -0.84467256 -0.49408118 0.20594182 243.02027542 |
| 24643 | | -0.47641085 0.51849497 -0.71006735 195.90966661 |
| 24644 | | 0.24405112 -0.69788733 -0.67334412 220.58487971 |
| 24645 | | Axis 0.27848415 -0.87133155 0.40401475 |
| 24646 | | Axis point 151.39777962 0.00000000 157.26095359 |
| 24647 | | Rotation angle (degrees) 178.74693150 |
| 24648 | | Shift along axis -13.90543314 |
| 24649 | | |
| 24650 | | |
| 24651 | | > fitmap #7 inMap #1 |
| 24652 | | |
| 24653 | | Fit molecule CopBprime_O55029.pdb (#7) to map postprocess_20231221.mrc (#1) |
| 24654 | | using 7214 atoms |
| 24655 | | average map value = 0.00312, steps = 40 |
| 24656 | | shifted from previous position = 0.0457 |
| 24657 | | rotated from previous position = 0.0115 degrees |
| 24658 | | atoms outside contour = 4439, contour level = 0.0036898 |
| 24659 | | |
| 24660 | | Position of CopBprime_O55029.pdb (#7) relative to postprocess_20231221.mrc |
| 24661 | | (#1) coordinates: |
| 24662 | | Matrix rotation and translation |
| 24663 | | -0.16297840 -0.17495258 -0.97099415 188.47156436 |
| 24664 | | -0.01390854 -0.98364743 0.17956694 177.44655545 |
| 24665 | | -0.98653160 0.04277064 0.15787995 238.55752250 |
| 24666 | | Axis -0.64565482 0.07333407 0.76009997 |
| 24667 | | Axis point 189.54120913 85.43977118 0.00000000 |
| 24668 | | Rotation angle (degrees) 173.91889861 |
| 24669 | | Shift along axis 72.65287052 |
| 24670 | | |
| 24671 | | |
| 24672 | | > fitmap #8 inMap #1 |
| 24673 | | |
| 24674 | | Fit molecule CopD_Q5XJY5 (#8) to map postprocess_20231221.mrc (#1) using 1462 |
| 24675 | | atoms |
| 24676 | | average map value = 0.003729, steps = 44 |
| 24677 | | shifted from previous position = 0.0408 |
| 24678 | | rotated from previous position = 0.102 degrees |
| 24679 | | atoms outside contour = 873, contour level = 0.0036898 |
| 24680 | | |
| 24681 | | Position of CopD_Q5XJY5 (#8) relative to postprocess_20231221.mrc (#1) |
| 24682 | | coordinates: |
| 24683 | | Matrix rotation and translation |
| 24684 | | 0.23790045 0.93128065 0.27589806 -92.98880965 |
| 24685 | | -0.88673422 0.09232665 0.45296603 106.05943164 |
| 24686 | | 0.39636576 -0.35240907 0.84776296 472.48610183 |
| 24687 | | Axis -0.40429175 -0.06047381 -0.91262868 |
| 24688 | | Axis point -102.10995577 189.95035402 0.00000000 |
| 24689 | | Rotation angle (degrees) 84.89420555 |
| 24690 | | Shift along axis -400.02357488 |
| 24691 | | |
| 24692 | | |
| 24693 | | > fitmap #9 inMap #1 |
| 24694 | | |
| 24695 | | Fit molecule CopG_Q9QZE5 (#9) to map postprocess_20231221.mrc (#1) using 6673 |
| 24696 | | atoms |
| 24697 | | average map value = 0.003524, steps = 44 |
| 24698 | | shifted from previous position = 0.0457 |
| 24699 | | rotated from previous position = 0.0581 degrees |
| 24700 | | atoms outside contour = 4569, contour level = 0.0036898 |
| 24701 | | |
| 24702 | | Position of CopG_Q9QZE5 (#9) relative to postprocess_20231221.mrc (#1) |
| 24703 | | coordinates: |
| 24704 | | Matrix rotation and translation |
| 24705 | | 0.48924720 -0.51142655 -0.70645598 223.52473516 |
| 24706 | | 0.54885976 -0.44895469 0.70511888 282.30607954 |
| 24707 | | -0.67778325 -0.73272271 0.06105163 258.73819061 |
| 24708 | | Axis -0.80473185 -0.01604757 0.59342154 |
| 24709 | | Axis point 0.00000000 245.03242129 103.85502366 |
| 24710 | | Rotation angle (degrees) 116.70057308 |
| 24711 | | Shift along axis -30.86698566 |
| 24712 | | |
| 24713 | | |
| 24714 | | > fitmap #10 inMap #1 |
| 24715 | | |
| 24716 | | Fit molecule CopZ1_P61924.pdb (#10) to map postprocess_20231221.mrc (#1) using |
| 24717 | | 1420 atoms |
| 24718 | | average map value = 0.003933, steps = 36 |
| 24719 | | shifted from previous position = 0.0572 |
| 24720 | | rotated from previous position = 0.0173 degrees |
| 24721 | | atoms outside contour = 728, contour level = 0.0036898 |
| 24722 | | |
| 24723 | | Position of CopZ1_P61924.pdb (#10) relative to postprocess_20231221.mrc (#1) |
| 24724 | | coordinates: |
| 24725 | | Matrix rotation and translation |
| 24726 | | 0.16498590 -0.93978539 -0.29930433 230.49900822 |
| 24727 | | -0.38648480 0.21759238 -0.89626060 241.46307367 |
| 24728 | | 0.90741895 0.26354694 -0.32731309 218.19582622 |
| 24729 | | Axis 0.65793354 -0.68454782 0.31387536 |
| 24730 | | Axis point 143.40944771 0.00000000 249.46139423 |
| 24731 | | Rotation angle (degrees) 118.18808002 |
| 24732 | | Shift along axis 54.84630101 |
| 24733 | | |
| 24734 | | |
| 24735 | | > fitmap #11 inMap #1 |
| 24736 | | |
| 24737 | | Fit molecule Golph3_ Q9CRA5.pdb (#11) to map postprocess_20231221.mrc (#1) |
| 24738 | | using 2367 atoms |
| 24739 | | average map value = 0.0031, steps = 44 |
| 24740 | | shifted from previous position = 0.0573 |
| 24741 | | rotated from previous position = 0.0141 degrees |
| 24742 | | atoms outside contour = 1696, contour level = 0.0036898 |
| 24743 | | |
| 24744 | | Position of Golph3_ Q9CRA5.pdb (#11) relative to postprocess_20231221.mrc (#1) |
| 24745 | | coordinates: |
| 24746 | | Matrix rotation and translation |
| 24747 | | 0.66065701 -0.23605314 0.71260875 198.04675678 |
| 24748 | | -0.68911945 -0.56720356 0.45099280 233.23742276 |
| 24749 | | 0.29773596 -0.78902410 -0.53739582 191.34041376 |
| 24750 | | Axis -0.89606552 0.29979689 -0.32739642 |
| 24751 | | Axis point 0.00000000 180.15753978 -4.24457588 |
| 24752 | | Rotation angle (degrees) 136.21746581 |
| 24753 | | Shift along axis -170.18318361 |
| 24754 | | |
| 24755 | | |
| 24756 | | > fitmap #12 inMap #1 |
| 24757 | | |
| 24758 | | Fit molecule CopZ2_Q9CTG7.pdb (#12) to map postprocess_20231221.mrc (#1) using |
| 24759 | | 1463 atoms |
| 24760 | | average map value = 0.003943, steps = 28 |
| 24761 | | shifted from previous position = 0.0629 |
| 24762 | | rotated from previous position = 0.0252 degrees |
| 24763 | | atoms outside contour = 792, contour level = 0.0036898 |
| 24764 | | |
| 24765 | | Position of CopZ2_Q9CTG7.pdb (#12) relative to postprocess_20231221.mrc (#1) |
| 24766 | | coordinates: |
| 24767 | | Matrix rotation and translation |
| 24768 | | -0.81886103 0.29484741 -0.49247503 229.58746104 |
| 24769 | | 0.42642015 0.88682129 -0.17808393 242.05348233 |
| 24770 | | 0.38422975 -0.35582726 -0.85191226 217.25273350 |
| 24771 | | Axis -0.19658273 -0.96962860 0.14551842 |
| 24772 | | Axis point 59.03709533 0.00000000 149.06603571 |
| 24773 | | Rotation angle (degrees) 153.12260873 |
| 24774 | | Shift along axis -248.22063449 |
| 24775 | | |
| 24776 | | |
| 24777 | | > hide #12 models |
| 24778 | | |
| 24779 | | > hide #11 models |
| 24780 | | |
| 24781 | | > hide #10 models |
| 24782 | | |
| 24783 | | > hide #!9 models |
| 24784 | | |
| 24785 | | > hide #8 models |
| 24786 | | |
| 24787 | | > hide #7 models |
| 24788 | | |
| 24789 | | > hide #6 models |
| 24790 | | |
| 24791 | | > hide #5 models |
| 24792 | | |
| 24793 | | > hide #4 models |
| 24794 | | |
| 24795 | | > hide #3 models |
| 24796 | | |
| 24797 | | > hide #!1 models |
| 24798 | | |
| 24799 | | > show #!2 models |
| 24800 | | |
| 24801 | | > show #!1 models |
| 24802 | | |
| 24803 | | > hide #!2 models |
| 24804 | | |
| 24805 | | > hide #!1 models |
| 24806 | | |
| 24807 | | > show #!2 models |
| 24808 | | |
| 24809 | | > show #!1 models |
| 24810 | | |
| 24811 | | > hide #!1 models |
| 24812 | | |
| 24813 | | > hide #!2 models |
| 24814 | | |
| 24815 | | > show #!19 models |
| 24816 | | |
| 24817 | | > show #!2 models |
| 24818 | | |
| 24819 | | > hide #!2 models |
| 24820 | | |
| 24821 | | > show #!2 models |
| 24822 | | |
| 24823 | | > show #!25 models |
| 24824 | | |
| 24825 | | > hide #!19 models |
| 24826 | | |
| 24827 | | > show #!24 models |
| 24828 | | |
| 24829 | | > show #26 models |
| 24830 | | |
| 24831 | | > hide #26 models |
| 24832 | | |
| 24833 | | > show #26 models |
| 24834 | | |
| 24835 | | > show #27 models |
| 24836 | | |
| 24837 | | > show #28 models |
| 24838 | | |
| 24839 | | > show #29 models |
| 24840 | | |
| 24841 | | > hide #29 models |
| 24842 | | |
| 24843 | | > hide #28 models |
| 24844 | | |
| 24845 | | > hide #27 models |
| 24846 | | |
| 24847 | | > hide #26 models |
| 24848 | | |
| 24849 | | > show #26 models |
| 24850 | | |
| 24851 | | > show #27 models |
| 24852 | | |
| 24853 | | > show #28 models |
| 24854 | | |
| 24855 | | > show #29 models |
| 24856 | | |
| 24857 | | > show #30 models |
| 24858 | | |
| 24859 | | > show #31 models |
| 24860 | | |
| 24861 | | > show #!32 models |
| 24862 | | |
| 24863 | | > show #33 models |
| 24864 | | |
| 24865 | | > show #34 models |
| 24866 | | |
| 24867 | | > show #35 models |
| 24868 | | |
| 24869 | | > hide #35 models |
| 24870 | | |
| 24871 | | > hide #34 models |
| 24872 | | |
| 24873 | | > hide #33 models |
| 24874 | | |
| 24875 | | > hide #!32 models |
| 24876 | | |
| 24877 | | > hide #31 models |
| 24878 | | |
| 24879 | | > hide #30 models |
| 24880 | | |
| 24881 | | > hide #29 models |
| 24882 | | |
| 24883 | | > hide #28 models |
| 24884 | | |
| 24885 | | > hide #27 models |
| 24886 | | |
| 24887 | | > hide #26 models |
| 24888 | | |
| 24889 | | > select add #24 |
| 24890 | | |
| 24891 | | 2 models selected |
| 24892 | | |
| 24893 | | > select add #26 |
| 24894 | | |
| 24895 | | 9810 atoms, 10032 bonds, 1233 residues, 3 models selected |
| 24896 | | |
| 24897 | | > select add #27 |
| 24898 | | |
| 24899 | | 17311 atoms, 17651 bonds, 2186 residues, 4 models selected |
| 24900 | | |
| 24901 | | > select add #28 |
| 24902 | | |
| 24903 | | 18768 atoms, 19134 bonds, 2367 residues, 5 models selected |
| 24904 | | |
| 24905 | | > select add #29 |
| 24906 | | |
| 24907 | | 20225 atoms, 20617 bonds, 2548 residues, 6 models selected |
| 24908 | | |
| 24909 | | > select add #30 |
| 24910 | | |
| 24911 | | 27439 atoms, 27990 bonds, 3453 residues, 7 models selected |
| 24912 | | |
| 24913 | | > select add #31 |
| 24914 | | |
| 24915 | | 28901 atoms, 29471 bonds, 3632 residues, 8 models selected |
| 24916 | | |
| 24917 | | > select add #32 |
| 24918 | | |
| 24919 | | 35574 atoms, 36257 bonds, 1 pseudobond, 4485 residues, 10 models selected |
| 24920 | | |
| 24921 | | > select add #33 |
| 24922 | | |
| 24923 | | 36994 atoms, 37698 bonds, 1 pseudobond, 4662 residues, 11 models selected |
| 24924 | | |
| 24925 | | > select add #34 |
| 24926 | | |
| 24927 | | 39361 atoms, 40096 bonds, 1 pseudobond, 4960 residues, 12 models selected |
| 24928 | | |
| 24929 | | > select add #35 |
| 24930 | | |
| 24931 | | 40824 atoms, 41582 bonds, 1 pseudobond, 5145 residues, 13 models selected |
| 24932 | | |
| 24933 | | > view matrix models |
| 24934 | | > #24,-0.16054,-0.65409,-0.73919,747.86,0.86063,-0.45943,0.21963,119.99,-0.48326,-0.60091,0.63669,187.05,#26,0.27527,-0.94991,-0.14796,385.04,0.78709,0.13431,0.60204,199.74,-0.55202,-0.28219,0.78463,113.9,#27,0.76996,-0.33035,-0.54591,411.76,-0.23736,-0.94244,0.23553,226.23,-0.59229,-0.051766,-0.80406,131.24,#28,-0.10092,0.98032,-0.16967,464.43,0.60766,0.19577,0.76969,176.08,0.78776,-0.02542,-0.61546,118.91,#29,0.26753,0.25509,0.92917,417.64,-0.45429,-0.81702,0.3551,287.56,0.84974,-0.51711,-0.1027,92.309,#30,0.76456,0.6398,-0.078118,425.21,-0.35018,0.31057,-0.8837,253.12,-0.54113,0.70299,0.4615,141.24,#31,0.58668,0.23131,-0.77608,343.11,0.44484,0.70875,0.54753,94.817,0.67669,-0.66646,0.31291,475.89,#32,0.063391,0.91735,-0.39301,336.08,0.019728,-0.39487,-0.91852,239.53,-0.99779,0.050473,-0.043129,74.118,#33,-0.44402,-0.18537,0.87663,391.63,0.51881,-0.85086,0.082864,255.36,0.73053,0.4916,0.47397,69.452,#34,0.12403,0.9922,-0.012537,422.1,0.95076,-0.11522,0.28771,225.29,0.28402,-0.047605,-0.95764,73.033,#35,-0.43145,-0.36473,0.82512,392.09,-0.81639,-0.23133,-0.52914,254.09,0.38387,-0.90192,-0.19795,68.983 |
| 24935 | | |
| 24936 | | > view matrix models |
| 24937 | | > #24,-0.16054,-0.65409,-0.73919,703.34,0.86063,-0.45943,0.21963,40.394,-0.48326,-0.60091,0.63669,261.37,#26,0.27527,-0.94991,-0.14796,340.53,0.78709,0.13431,0.60204,120.14,-0.55202,-0.28219,0.78463,188.22,#27,0.76996,-0.33035,-0.54591,367.25,-0.23736,-0.94244,0.23553,146.63,-0.59229,-0.051766,-0.80406,205.56,#28,-0.10092,0.98032,-0.16967,419.92,0.60766,0.19577,0.76969,96.476,0.78776,-0.02542,-0.61546,193.22,#29,0.26753,0.25509,0.92917,373.13,-0.45429,-0.81702,0.3551,207.96,0.84974,-0.51711,-0.1027,166.62,#30,0.76456,0.6398,-0.078118,380.7,-0.35018,0.31057,-0.8837,173.52,-0.54113,0.70299,0.4615,215.55,#31,0.58668,0.23131,-0.77608,298.6,0.44484,0.70875,0.54753,15.218,0.67669,-0.66646,0.31291,550.2,#32,0.063391,0.91735,-0.39301,291.56,0.019728,-0.39487,-0.91852,159.93,-0.99779,0.050473,-0.043129,148.43,#33,-0.44402,-0.18537,0.87663,347.12,0.51881,-0.85086,0.082864,175.76,0.73053,0.4916,0.47397,143.77,#34,0.12403,0.9922,-0.012537,377.59,0.95076,-0.11522,0.28771,145.69,0.28402,-0.047605,-0.95764,147.35,#35,-0.43145,-0.36473,0.82512,347.57,-0.81639,-0.23133,-0.52914,174.49,0.38387,-0.90192,-0.19795,143.3 |
| 24938 | | |
| 24939 | | > ui mousemode right "rotate selected models" |
| 24940 | | |
| 24941 | | > view matrix models |
| 24942 | | > #24,-0.90809,0.28081,0.31067,454.69,-0.41493,-0.70354,-0.57694,554.12,0.056559,-0.65282,0.7554,123.12,#26,-0.99491,0.0089671,-0.10039,450.36,-0.0052843,-0.99931,-0.03689,176.73,-0.10066,-0.036172,0.99426,153.23,#27,-0.28319,0.85799,-0.42856,429,0.62049,-0.17682,-0.76402,202.38,-0.7313,-0.48228,-0.48229,177.78,#28,-0.11625,-0.43906,-0.8909,451.39,0.00785,0.89655,-0.44287,257.49,0.99319,-0.058476,-0.10077,134.14,#29,0.70867,0.37799,-0.59574,357.56,0.54548,0.242,0.80243,188.18,0.44748,-0.89362,-0.034683,175.57,#30,-0.16277,-0.10384,0.98118,407.43,0.64654,0.73996,0.18557,213.45,-0.74531,0.66459,-0.053313,198.18,#31,-0.21503,-0.97071,-0.10715,719.32,0.66103,-0.063903,-0.74763,246.26,0.71889,-0.23159,0.65541,411.34,#32,-0.50044,0.1108,0.85865,411.32,-0.19814,0.9508,-0.23817,113.48,-0.84279,-0.28932,-0.45387,146.93,#33,0.023605,0.99631,-0.082554,380.94,-0.31959,0.085764,0.94367,162.7,0.94726,0.0041083,0.32044,143.32,#34,-0.70113,-0.19067,-0.68707,399.79,0.038256,0.95214,-0.30327,197.5,0.71201,-0.23892,-0.66028,126.6,#35,0.9827,-0.12958,0.13233,381.67,-0.18193,-0.54138,0.82086,163.22,-0.03472,-0.83073,-0.55559,142.2 |
| 24943 | | |
| 24944 | | > ui mousemode right "translate selected models" |
| 24945 | | |
| 24946 | | > view matrix models |
| 24947 | | > #24,-0.90809,0.28081,0.31067,423.38,-0.41493,-0.70354,-0.57694,466.16,0.056559,-0.65282,0.7554,172.1,#26,-0.99491,0.0089671,-0.10039,419.05,-0.0052843,-0.99931,-0.03689,88.778,-0.10066,-0.036172,0.99426,202.22,#27,-0.28319,0.85799,-0.42856,397.7,0.62049,-0.17682,-0.76402,114.43,-0.7313,-0.48228,-0.48229,226.76,#28,-0.11625,-0.43906,-0.8909,420.08,0.00785,0.89655,-0.44287,169.54,0.99319,-0.058476,-0.10077,183.12,#29,0.70867,0.37799,-0.59574,326.25,0.54548,0.242,0.80243,100.22,0.44748,-0.89362,-0.034683,224.55,#30,-0.16277,-0.10384,0.98118,376.13,0.64654,0.73996,0.18557,125.49,-0.74531,0.66459,-0.053313,247.16,#31,-0.21503,-0.97071,-0.10715,688.02,0.66103,-0.063903,-0.74763,158.31,0.71889,-0.23159,0.65541,460.33,#32,-0.50044,0.1108,0.85865,380.02,-0.19814,0.9508,-0.23817,25.526,-0.84279,-0.28932,-0.45387,195.91,#33,0.023605,0.99631,-0.082554,349.64,-0.31959,0.085764,0.94367,74.75,0.94726,0.0041083,0.32044,192.31,#34,-0.70113,-0.19067,-0.68707,368.49,0.038256,0.95214,-0.30327,109.54,0.71201,-0.23892,-0.66028,175.59,#35,0.9827,-0.12958,0.13233,350.37,-0.18193,-0.54138,0.82086,75.267,-0.03472,-0.83073,-0.55559,191.19 |
| 24948 | | |
| 24949 | | > view matrix models |
| 24950 | | > #24,-0.90809,0.28081,0.31067,455.75,-0.41493,-0.70354,-0.57694,495.16,0.056559,-0.65282,0.7554,174.25,#26,-0.99491,0.0089671,-0.10039,451.42,-0.0052843,-0.99931,-0.03689,117.78,-0.10066,-0.036172,0.99426,204.37,#27,-0.28319,0.85799,-0.42856,430.07,0.62049,-0.17682,-0.76402,143.43,-0.7313,-0.48228,-0.48229,228.91,#28,-0.11625,-0.43906,-0.8909,452.45,0.00785,0.89655,-0.44287,198.54,0.99319,-0.058476,-0.10077,185.27,#29,0.70867,0.37799,-0.59574,358.62,0.54548,0.242,0.80243,129.23,0.44748,-0.89362,-0.034683,226.7,#30,-0.16277,-0.10384,0.98118,408.49,0.64654,0.73996,0.18557,154.5,-0.74531,0.66459,-0.053313,249.31,#31,-0.21503,-0.97071,-0.10715,720.39,0.66103,-0.063903,-0.74763,187.31,0.71889,-0.23159,0.65541,462.48,#32,-0.50044,0.1108,0.85865,412.39,-0.19814,0.9508,-0.23817,54.528,-0.84279,-0.28932,-0.45387,198.06,#33,0.023605,0.99631,-0.082554,382.01,-0.31959,0.085764,0.94367,103.75,0.94726,0.0041083,0.32044,194.46,#34,-0.70113,-0.19067,-0.68707,400.86,0.038256,0.95214,-0.30327,138.54,0.71201,-0.23892,-0.66028,177.74,#35,0.9827,-0.12958,0.13233,382.74,-0.18193,-0.54138,0.82086,104.27,-0.03472,-0.83073,-0.55559,193.34 |
| 24951 | | |
| 24952 | | > view matrix models |
| 24953 | | > #24,-0.90809,0.28081,0.31067,457.66,-0.41493,-0.70354,-0.57694,496.68,0.056559,-0.65282,0.7554,178.02,#26,-0.99491,0.0089671,-0.10039,453.32,-0.0052843,-0.99931,-0.03689,119.3,-0.10066,-0.036172,0.99426,208.14,#27,-0.28319,0.85799,-0.42856,431.97,0.62049,-0.17682,-0.76402,144.95,-0.7313,-0.48228,-0.48229,232.68,#28,-0.11625,-0.43906,-0.8909,454.36,0.00785,0.89655,-0.44287,200.06,0.99319,-0.058476,-0.10077,189.04,#29,0.70867,0.37799,-0.59574,360.53,0.54548,0.242,0.80243,130.74,0.44748,-0.89362,-0.034683,230.47,#30,-0.16277,-0.10384,0.98118,410.4,0.64654,0.73996,0.18557,156.01,-0.74531,0.66459,-0.053313,253.08,#31,-0.21503,-0.97071,-0.10715,722.29,0.66103,-0.063903,-0.74763,188.83,0.71889,-0.23159,0.65541,466.24,#32,-0.50044,0.1108,0.85865,414.29,-0.19814,0.9508,-0.23817,56.047,-0.84279,-0.28932,-0.45387,201.83,#33,0.023605,0.99631,-0.082554,383.91,-0.31959,0.085764,0.94367,105.27,0.94726,0.0041083,0.32044,198.23,#34,-0.70113,-0.19067,-0.68707,402.76,0.038256,0.95214,-0.30327,140.06,0.71201,-0.23892,-0.66028,181.5,#35,0.9827,-0.12958,0.13233,384.64,-0.18193,-0.54138,0.82086,105.79,-0.03472,-0.83073,-0.55559,197.11 |
| 24954 | | |
| 24955 | | > view matrix models |
| 24956 | | > #24,-0.90809,0.28081,0.31067,456.98,-0.41493,-0.70354,-0.57694,465.87,0.056559,-0.65282,0.7554,205.31,#26,-0.99491,0.0089671,-0.10039,452.65,-0.0052843,-0.99931,-0.03689,88.485,-0.10066,-0.036172,0.99426,235.42,#27,-0.28319,0.85799,-0.42856,431.3,0.62049,-0.17682,-0.76402,114.14,-0.7313,-0.48228,-0.48229,259.96,#28,-0.11625,-0.43906,-0.8909,453.68,0.00785,0.89655,-0.44287,169.24,0.99319,-0.058476,-0.10077,216.33,#29,0.70867,0.37799,-0.59574,359.85,0.54548,0.242,0.80243,99.93,0.44748,-0.89362,-0.034683,257.76,#30,-0.16277,-0.10384,0.98118,409.72,0.64654,0.73996,0.18557,125.2,-0.74531,0.66459,-0.053313,280.37,#31,-0.21503,-0.97071,-0.10715,721.61,0.66103,-0.063903,-0.74763,158.02,0.71889,-0.23159,0.65541,493.53,#32,-0.50044,0.1108,0.85865,413.61,-0.19814,0.9508,-0.23817,25.233,-0.84279,-0.28932,-0.45387,229.12,#33,0.023605,0.99631,-0.082554,383.23,-0.31959,0.085764,0.94367,74.456,0.94726,0.0041083,0.32044,225.51,#34,-0.70113,-0.19067,-0.68707,402.08,0.038256,0.95214,-0.30327,109.25,0.71201,-0.23892,-0.66028,208.79,#35,0.9827,-0.12958,0.13233,383.97,-0.18193,-0.54138,0.82086,74.973,-0.03472,-0.83073,-0.55559,224.39 |
| 24957 | | |
| 24958 | | > view matrix models |
| 24959 | | > #24,-0.90809,0.28081,0.31067,464.53,-0.41493,-0.70354,-0.57694,464.91,0.056559,-0.65282,0.7554,199.73,#26,-0.99491,0.0089671,-0.10039,460.2,-0.0052843,-0.99931,-0.03689,87.525,-0.10066,-0.036172,0.99426,229.84,#27,-0.28319,0.85799,-0.42856,438.84,0.62049,-0.17682,-0.76402,113.18,-0.7313,-0.48228,-0.48229,254.38,#28,-0.11625,-0.43906,-0.8909,461.23,0.00785,0.89655,-0.44287,168.28,0.99319,-0.058476,-0.10077,210.75,#29,0.70867,0.37799,-0.59574,367.4,0.54548,0.242,0.80243,98.97,0.44748,-0.89362,-0.034683,252.18,#30,-0.16277,-0.10384,0.98118,417.27,0.64654,0.73996,0.18557,124.24,-0.74531,0.66459,-0.053313,274.79,#31,-0.21503,-0.97071,-0.10715,729.16,0.66103,-0.063903,-0.74763,157.06,0.71889,-0.23159,0.65541,487.95,#32,-0.50044,0.1108,0.85865,421.16,-0.19814,0.9508,-0.23817,24.273,-0.84279,-0.28932,-0.45387,223.54,#33,0.023605,0.99631,-0.082554,390.78,-0.31959,0.085764,0.94367,73.496,0.94726,0.0041083,0.32044,219.93,#34,-0.70113,-0.19067,-0.68707,409.63,0.038256,0.95214,-0.30327,108.29,0.71201,-0.23892,-0.66028,203.21,#35,0.9827,-0.12958,0.13233,391.51,-0.18193,-0.54138,0.82086,74.013,-0.03472,-0.83073,-0.55559,218.81 |
| 24960 | | |
| 24961 | | > view matrix models |
| 24962 | | > #24,-0.90809,0.28081,0.31067,465.49,-0.41493,-0.70354,-0.57694,468.88,0.056559,-0.65282,0.7554,202.27,#26,-0.99491,0.0089671,-0.10039,461.16,-0.0052843,-0.99931,-0.03689,91.492,-0.10066,-0.036172,0.99426,232.39,#27,-0.28319,0.85799,-0.42856,439.8,0.62049,-0.17682,-0.76402,117.14,-0.7313,-0.48228,-0.48229,256.93,#28,-0.11625,-0.43906,-0.8909,462.19,0.00785,0.89655,-0.44287,172.25,0.99319,-0.058476,-0.10077,213.29,#29,0.70867,0.37799,-0.59574,368.36,0.54548,0.242,0.80243,102.94,0.44748,-0.89362,-0.034683,254.72,#30,-0.16277,-0.10384,0.98118,418.23,0.64654,0.73996,0.18557,128.21,-0.74531,0.66459,-0.053313,277.33,#31,-0.21503,-0.97071,-0.10715,730.12,0.66103,-0.063903,-0.74763,161.02,0.71889,-0.23159,0.65541,490.49,#32,-0.50044,0.1108,0.85865,422.12,-0.19814,0.9508,-0.23817,28.241,-0.84279,-0.28932,-0.45387,226.08,#33,0.023605,0.99631,-0.082554,391.74,-0.31959,0.085764,0.94367,77.464,0.94726,0.0041083,0.32044,222.48,#34,-0.70113,-0.19067,-0.68707,410.59,0.038256,0.95214,-0.30327,112.26,0.71201,-0.23892,-0.66028,205.75,#35,0.9827,-0.12958,0.13233,392.47,-0.18193,-0.54138,0.82086,77.981,-0.03472,-0.83073,-0.55559,221.36 |
| 24963 | | |
| 24964 | | > view matrix models |
| 24965 | | > #24,-0.90809,0.28081,0.31067,465.54,-0.41493,-0.70354,-0.57694,465.93,0.056559,-0.65282,0.7554,196.12,#26,-0.99491,0.0089671,-0.10039,461.21,-0.0052843,-0.99931,-0.03689,88.547,-0.10066,-0.036172,0.99426,226.23,#27,-0.28319,0.85799,-0.42856,439.86,0.62049,-0.17682,-0.76402,114.2,-0.7313,-0.48228,-0.48229,250.77,#28,-0.11625,-0.43906,-0.8909,462.24,0.00785,0.89655,-0.44287,169.31,0.99319,-0.058476,-0.10077,207.14,#29,0.70867,0.37799,-0.59574,368.41,0.54548,0.242,0.80243,99.993,0.44748,-0.89362,-0.034683,248.57,#30,-0.16277,-0.10384,0.98118,418.28,0.64654,0.73996,0.18557,125.26,-0.74531,0.66459,-0.053313,271.18,#31,-0.21503,-0.97071,-0.10715,730.17,0.66103,-0.063903,-0.74763,158.08,0.71889,-0.23159,0.65541,484.34,#32,-0.50044,0.1108,0.85865,422.17,-0.19814,0.9508,-0.23817,25.296,-0.84279,-0.28932,-0.45387,219.93,#33,0.023605,0.99631,-0.082554,391.79,-0.31959,0.085764,0.94367,74.519,0.94726,0.0041083,0.32044,216.32,#34,-0.70113,-0.19067,-0.68707,410.64,0.038256,0.95214,-0.30327,109.31,0.71201,-0.23892,-0.66028,199.6,#35,0.9827,-0.12958,0.13233,392.53,-0.18193,-0.54138,0.82086,75.036,-0.03472,-0.83073,-0.55559,215.2 |
| 24966 | | |
| 24967 | | > view matrix models |
| 24968 | | > #24,-0.90809,0.28081,0.31067,468.62,-0.41493,-0.70354,-0.57694,473.95,0.056559,-0.65282,0.7554,197.39,#26,-0.99491,0.0089671,-0.10039,464.28,-0.0052843,-0.99931,-0.03689,96.565,-0.10066,-0.036172,0.99426,227.5,#27,-0.28319,0.85799,-0.42856,442.93,0.62049,-0.17682,-0.76402,122.22,-0.7313,-0.48228,-0.48229,252.05,#28,-0.11625,-0.43906,-0.8909,465.32,0.00785,0.89655,-0.44287,177.32,0.99319,-0.058476,-0.10077,208.41,#29,0.70867,0.37799,-0.59574,371.49,0.54548,0.242,0.80243,108.01,0.44748,-0.89362,-0.034683,249.84,#30,-0.16277,-0.10384,0.98118,421.36,0.64654,0.73996,0.18557,133.28,-0.74531,0.66459,-0.053313,272.45,#31,-0.21503,-0.97071,-0.10715,733.25,0.66103,-0.063903,-0.74763,166.1,0.71889,-0.23159,0.65541,485.61,#32,-0.50044,0.1108,0.85865,425.25,-0.19814,0.9508,-0.23817,33.314,-0.84279,-0.28932,-0.45387,221.2,#33,0.023605,0.99631,-0.082554,394.87,-0.31959,0.085764,0.94367,82.537,0.94726,0.0041083,0.32044,217.59,#34,-0.70113,-0.19067,-0.68707,413.72,0.038256,0.95214,-0.30327,117.33,0.71201,-0.23892,-0.66028,200.87,#35,0.9827,-0.12958,0.13233,395.6,-0.18193,-0.54138,0.82086,83.054,-0.03472,-0.83073,-0.55559,216.47 |
| 24969 | | |
| 24970 | | > ui mousemode right "rotate selected models" |
| 24971 | | |
| 24972 | | > view matrix models |
| 24973 | | > #24,-0.98722,0.045709,0.15266,568.15,-0.15935,-0.27526,-0.94807,413.37,-0.0013149,-0.96028,0.27903,376.99,#26,-0.95639,-0.28169,-0.077257,455.69,0.27662,-0.7885,-0.54932,93.473,0.093823,-0.54674,0.83203,208.58,#27,-0.11305,0.75541,-0.64542,443.41,0.96382,-0.074447,-0.25595,105.63,-0.2414,-0.65101,-0.71966,246.24,#28,-0.079507,-0.16234,-0.98353,479.48,-0.50904,0.85492,-0.099964,168.81,0.85706,0.49271,-0.15061,234.01,#29,0.84915,0.40519,-0.33878,370.88,0.035006,0.59685,0.80159,111.6,0.527,-0.69253,0.49263,250.06,#30,0.009283,0.1345,0.99087,426.58,0.96513,0.25802,-0.044066,108.33,-0.2616,0.95673,-0.12742,272.95,#31,0.0068823,-0.95409,-0.29946,740.79,0.18998,0.29526,-0.93634,-52.318,0.98176,-0.050447,0.18329,411.7,#32,-0.56112,0.3726,0.73913,399.85,0.41355,0.89972,-0.13959,54.75,-0.71702,0.22734,-0.65894,177.81,#33,-0.041827,0.97816,0.20361,384.92,-0.77992,-0.15934,0.60526,103.33,0.62448,-0.13348,0.76955,205.67,#34,-0.63863,0.086043,-0.76469,412.53,-0.19828,0.94177,0.27156,136.24,0.74353,0.32505,-0.58438,206.16,#35,0.88652,-0.30527,0.3477,385.74,-0.35103,0.045824,0.93524,104.19,-0.30144,-0.95116,-0.066536,204.87 |
| 24974 | | |
| 24975 | | > ui mousemode right "translate selected models" |
| 24976 | | |
| 24977 | | > view matrix models |
| 24978 | | > #24,-0.98722,0.045709,0.15266,561.42,-0.15935,-0.27526,-0.94807,411.47,-0.0013149,-0.96028,0.27903,386.23,#26,-0.95639,-0.28169,-0.077257,448.95,0.27662,-0.7885,-0.54932,91.576,0.093823,-0.54674,0.83203,217.83,#27,-0.11305,0.75541,-0.64542,436.68,0.96382,-0.074447,-0.25595,103.73,-0.2414,-0.65101,-0.71966,255.48,#28,-0.079507,-0.16234,-0.98353,472.75,-0.50904,0.85492,-0.099964,166.91,0.85706,0.49271,-0.15061,243.25,#29,0.84915,0.40519,-0.33878,364.14,0.035006,0.59685,0.80159,109.7,0.527,-0.69253,0.49263,259.3,#30,0.009283,0.1345,0.99087,419.84,0.96513,0.25802,-0.044066,106.43,-0.2616,0.95673,-0.12742,282.19,#31,0.0068823,-0.95409,-0.29946,734.06,0.18998,0.29526,-0.93634,-54.215,0.98176,-0.050447,0.18329,420.95,#32,-0.56112,0.3726,0.73913,393.12,0.41355,0.89972,-0.13959,52.853,-0.71702,0.22734,-0.65894,187.06,#33,-0.041827,0.97816,0.20361,378.19,-0.77992,-0.15934,0.60526,101.43,0.62448,-0.13348,0.76955,214.92,#34,-0.63863,0.086043,-0.76469,405.8,-0.19828,0.94177,0.27156,134.34,0.74353,0.32505,-0.58438,215.41,#35,0.88652,-0.30527,0.3477,379.01,-0.35103,0.045824,0.93524,102.29,-0.30144,-0.95116,-0.066536,214.12 |
| 24979 | | |
| 24980 | | > view matrix models |
| 24981 | | > #24,-0.98722,0.045709,0.15266,448.95,-0.15935,-0.27526,-0.94807,688.08,-0.0013149,-0.96028,0.27903,263.14,#26,-0.95639,-0.28169,-0.077257,336.48,0.27662,-0.7885,-0.54932,368.18,0.093823,-0.54674,0.83203,94.736,#27,-0.11305,0.75541,-0.64542,324.21,0.96382,-0.074447,-0.25595,380.34,-0.2414,-0.65101,-0.71966,132.39,#28,-0.079507,-0.16234,-0.98353,360.28,-0.50904,0.85492,-0.099964,443.52,0.85706,0.49271,-0.15061,120.16,#29,0.84915,0.40519,-0.33878,251.67,0.035006,0.59685,0.80159,386.31,0.527,-0.69253,0.49263,136.21,#30,0.009283,0.1345,0.99087,307.37,0.96513,0.25802,-0.044066,383.04,-0.2616,0.95673,-0.12742,159.1,#31,0.0068823,-0.95409,-0.29946,621.59,0.18998,0.29526,-0.93634,222.39,0.98176,-0.050447,0.18329,297.85,#32,-0.56112,0.3726,0.73913,280.65,0.41355,0.89972,-0.13959,329.46,-0.71702,0.22734,-0.65894,63.965,#33,-0.041827,0.97816,0.20361,265.72,-0.77992,-0.15934,0.60526,378.04,0.62448,-0.13348,0.76955,91.826,#34,-0.63863,0.086043,-0.76469,293.33,-0.19828,0.94177,0.27156,410.95,0.74353,0.32505,-0.58438,92.318,#35,0.88652,-0.30527,0.3477,266.54,-0.35103,0.045824,0.93524,378.9,-0.30144,-0.95116,-0.066536,91.023 |
| 24982 | | |
| 24983 | | > view matrix models |
| 24984 | | > #24,-0.98722,0.045709,0.15266,422.05,-0.15935,-0.27526,-0.94807,627.72,-0.0013149,-0.96028,0.27903,265.74,#26,-0.95639,-0.28169,-0.077257,309.58,0.27662,-0.7885,-0.54932,307.82,0.093823,-0.54674,0.83203,97.333,#27,-0.11305,0.75541,-0.64542,297.3,0.96382,-0.074447,-0.25595,319.98,-0.2414,-0.65101,-0.71966,134.99,#28,-0.079507,-0.16234,-0.98353,333.38,-0.50904,0.85492,-0.099964,383.15,0.85706,0.49271,-0.15061,122.76,#29,0.84915,0.40519,-0.33878,224.77,0.035006,0.59685,0.80159,325.95,0.527,-0.69253,0.49263,138.81,#30,0.009283,0.1345,0.99087,280.47,0.96513,0.25802,-0.044066,322.67,-0.2616,0.95673,-0.12742,161.7,#31,0.0068823,-0.95409,-0.29946,594.69,0.18998,0.29526,-0.93634,162.03,0.98176,-0.050447,0.18329,300.45,#32,-0.56112,0.3726,0.73913,253.74,0.41355,0.89972,-0.13959,269.1,-0.71702,0.22734,-0.65894,66.562,#33,-0.041827,0.97816,0.20361,238.81,-0.77992,-0.15934,0.60526,317.68,0.62448,-0.13348,0.76955,94.423,#34,-0.63863,0.086043,-0.76469,266.42,-0.19828,0.94177,0.27156,350.59,0.74353,0.32505,-0.58438,94.915,#35,0.88652,-0.30527,0.3477,239.63,-0.35103,0.045824,0.93524,318.54,-0.30144,-0.95116,-0.066536,93.62 |
| 24985 | | |
| 24986 | | > ui mousemode right "rotate selected models" |
| 24987 | | |
| 24988 | | > view matrix models |
| 24989 | | > #24,-0.96236,0.08449,0.25831,385.32,-0.2609,-0.55342,-0.79099,671.07,0.076123,-0.82861,0.55463,161.04,#26,-0.98252,-0.18504,-0.020165,311.64,0.18361,-0.94569,-0.26825,304.21,0.030568,-0.26727,0.96314,103.31,#27,-0.22107,0.76401,-0.60615,297.76,0.82197,-0.18853,-0.53742,326.03,-0.52487,-0.61704,-0.58632,135.68,#28,-0.02722,-0.26325,-0.96434,326.43,-0.2227,0.94205,-0.25088,385.88,0.97451,0.20793,-0.084269,103.46,#29,0.83538,0.33938,-0.43239,224.99,0.29167,0.39308,0.87202,324.77,0.46591,-0.85458,0.22938,139.52,#30,-0.099538,0.09653,0.99034,280.52,0.83057,0.55614,0.029272,335.01,-0.54794,0.82546,-0.13553,160.7,#31,-0.022625,-0.98125,-0.1914,610.01,0.48548,0.15658,-0.86011,261.59,0.87396,-0.11238,0.47283,333.44,#32,-0.59928,0.26506,0.75538,260.86,0.1047,0.96144,-0.2543,251.87,-0.79366,-0.07331,-0.60393,87.653,#33,0.043119,0.99099,0.12678,240.24,-0.54651,-0.082832,0.83335,304.72,0.83634,-0.10522,0.53801,99.501,#34,-0.61742,-0.025179,-0.78623,263.88,-0.027069,0.99958,-0.010754,339.01,0.78617,0.014643,-0.61784,88.988,#35,0.92328,-0.30109,0.23854,240.96,-0.32622,-0.28667,0.90078,305.37,-0.20284,-0.90948,-0.3629,98.448 |
| 24990 | | |
| 24991 | | > volume #24 level 0.003763 |
| 24992 | | |
| 24993 | | > view matrix models |
| 24994 | | > #24,-0.42877,0.67009,-0.60592,345.79,-0.43491,-0.74097,-0.51168,683.83,-0.79184,0.04413,0.60913,153.01,#26,-0.29506,-0.019261,-0.95529,295.26,-0.040339,-0.99865,0.032595,309.65,-0.95463,0.048153,0.29388,181,#27,0.5969,0.7675,0.23377,265.82,0.55762,-0.18735,-0.80868,336.41,-0.57687,0.61306,-0.5398,169.45,#28,-0.95796,-0.06691,-0.27899,317.74,0.076679,0.87734,-0.47371,388.81,0.27646,-0.47518,-0.83533,170.22,#29,-0.10497,0.98231,-0.15505,239.24,0.59608,0.18695,0.78085,320.09,0.79603,-0.010458,-0.60516,103.58,#30,0.65811,-0.60998,0.44138,239.28,0.58594,0.78307,0.20852,348.32,-0.47282,0.1214,0.87276,156.88,#31,-0.70761,-0.16854,-0.68621,166.56,0.70521,-0.10761,-0.70078,405.21,0.044265,-0.9798,0.195,524.66,#32,0.56895,0.36243,0.7382,282.32,-0.27268,0.93001,-0.24644,245.04,-0.77585,-0.061084,0.62795,146.04,#33,-0.87964,0.38888,-0.27386,276.56,-0.2492,0.11361,0.96176,293.01,0.40512,0.91426,-0.0030221,114.02,#34,-0.92542,0.1988,0.3226,301.23,0.070259,0.92659,-0.36946,327.01,-0.37237,-0.31924,-0.87145,123.04,#35,0.40428,0.683,0.60834,277.91,-0.15647,-0.60366,0.78173,293.46,0.90115,-0.41123,-0.13718,114.24 |
| 24995 | | |
| 24996 | | > view matrix models |
| 24997 | | > #24,-0.8369,0.39245,-0.38155,438.18,0.27643,-0.29862,-0.91346,533.65,-0.47243,-0.86995,0.14144,376.12,#26,-0.6898,-0.26294,-0.67457,307.18,0.66048,-0.61018,-0.43755,287,-0.29656,-0.74736,0.59456,120.49,#27,0.40063,0.87879,-0.25927,284.07,0.91201,-0.40963,0.020834,304.41,-0.087896,-0.2448,-0.96558,150.15,#28,-0.67282,-0.034265,-0.73901,342.77,-0.39938,0.85768,0.32384,345.78,0.62274,0.51303,-0.59075,167.02,#29,0.42676,0.88342,-0.19353,227.54,-0.31347,0.34522,0.88462,340.83,0.8483,-0.31686,0.42425,122.06,#30,0.50702,-0.25578,0.82311,259.01,0.86045,0.20616,-0.46596,314.86,-0.050508,0.9445,0.32462,166.47,#31,-0.39449,-0.6112,-0.68616,376.86,0.19979,0.6718,-0.71328,40.133,0.89692,-0.41847,-0.1429,399.76,#32,0.064856,0.53145,0.84461,263.14,0.59036,0.66195,-0.46185,274.81,-0.80453,0.52857,-0.27081,61.526,#33,-0.6359,0.77142,0.023203,256.78,-0.66768,-0.56497,0.48478,325.97,0.38708,0.29278,0.87433,88.002,#34,-0.9372,0.27541,-0.21405,290.98,0.1162,0.82512,0.55287,343.98,0.32888,0.49328,-0.8053,106.75,#35,0.7062,0.2365,0.66735,258.14,-0.70454,0.1415,0.69541,326.37,0.070036,-0.96127,0.26655,87.822 |
| 24998 | | |
| 24999 | | > view matrix models |
| 25000 | | > #24,-0.82146,0.50944,0.25628,269.61,-0.3073,-0.016865,-0.95146,607.02,-0.48039,-0.86034,0.1704,369.41,#26,-0.94416,0.1807,-0.27551,322.25,0.090507,-0.66179,-0.7442,325.52,-0.31681,-0.72758,0.60849,121.76,#27,-0.24134,0.94976,-0.1993,292.78,0.96338,0.20975,-0.16705,325.83,-0.11686,-0.23232,-0.96559,150.87,#28,-0.29807,-0.56275,-0.77102,313.44,-0.71229,0.66884,-0.21281,394.93,0.63545,0.48576,-0.60021,166.39,#29,0.51323,0.49181,-0.70336,226.33,0.035911,0.80651,0.59014,319.17,0.8575,-0.32814,0.39626,121.68,#30,-0.12642,-0.34622,0.9296,266.27,0.98891,0.029635,0.14552,319.11,-0.07793,0.93769,0.33863,166.87,#31,-0.45094,-0.88675,-0.10165,523.42,-0.061702,0.14459,-0.98757,180.5,0.89042,-0.43906,-0.11992,408.64,#32,-0.29569,0.0036975,0.95528,296.08,0.48538,0.86187,0.14691,287.38,-0.82279,0.50711,-0.25664,63.238,#33,-0.099921,0.95011,-0.29548,259.17,-0.90735,0.034866,0.41894,324.52,0.40834,0.30997,0.85859,88.092,#34,-0.8175,-0.29789,-0.49291,274.78,-0.47504,0.83266,0.28464,360.19,0.32564,0.46684,-0.8222,106.24,#35,0.98841,0.11809,0.095423,260.01,-0.12094,0.23248,0.96505,325.67,0.091774,-0.9654,0.24407,87.898 |
| 25001 | | |
| 25002 | | > view matrix models |
| 25003 | | > #24,-0.93632,0.19207,0.29395,350.03,-0.34833,-0.40246,-0.84658,670.96,-0.044296,-0.89506,0.44374,224.43,#26,-0.9953,-0.076393,-0.05958,315.41,0.094467,-0.90166,-0.422,313.55,-0.021483,-0.42564,0.90464,104.39,#27,-0.26189,0.81825,-0.51174,297.38,0.87528,-0.022002,-0.48312,328.6,-0.40657,-0.57444,-0.71043,138.52,#28,-0.071659,-0.36452,-0.92843,322.37,-0.37964,0.87073,-0.31257,395.05,0.92235,0.33007,-0.20078,118.47,#29,0.77077,0.35752,-0.52735,224.96,0.27998,0.55343,0.78443,320.72,0.5723,-0.75226,0.32647,136.16,#30,-0.14044,-0.012317,0.99001,277.72,0.89752,0.42059,0.13255,331.93,-0.41802,0.90717,-0.048015,163.15,#31,-0.12725,-0.98184,-0.14068,600.28,0.33339,0.091236,-0.93836,258.86,0.93416,-0.16631,0.31573,348.64,#32,-0.55164,0.17733,0.81501,270.98,0.18251,0.97912,-0.08951,260.44,-0.81387,0.09937,-0.57249,76.672,#33,0.038121,0.99921,0.010898,244.7,-0.66975,0.017455,0.74238,308.78,0.74161,-0.035599,0.66989,94.891,#34,-0.66367,-0.12047,-0.73826,265.65,-0.20538,0.97836,0.024977,346.15,0.71928,0.1682,-0.67405,91.819,#35,0.96154,-0.21067,0.17624,245.42,-0.21157,-0.15886,0.96437,309.65,-0.17517,-0.96456,-0.19733,94.016 |
| 25004 | | |
| 25005 | | > view matrix models |
| 25006 | | > #24,-0.98931,0.016977,0.14485,429.9,-0.11261,-0.72008,-0.6847,650.38,0.09268,-0.69369,0.71429,94.648,#26,-0.94925,-0.3078,-0.064668,308.2,0.31144,-0.94857,-0.056799,292.23,-0.043859,-0.074057,0.99629,110.79,#27,-0.10406,0.73736,-0.66743,297.08,0.71612,-0.41014,-0.56477,321.92,-0.69018,-0.53673,-0.48536,137.46,#28,-0.065652,-0.13638,-0.98848,333.81,-0.0093562,0.99066,-0.13605,369.51,0.9978,0.00031621,-0.066314,94.713,#29,0.86271,0.39675,-0.31357,224.77,0.27179,0.15914,0.94911,330.9,0.42646,-0.90403,0.029464,138.8,#30,0.017727,0.16279,0.9865,280.97,0.70393,0.69865,-0.12794,338.06,-0.71005,0.6967,-0.10221,159.46,#31,0.034803,-0.95032,-0.30931,596.06,0.65566,0.25529,-0.71059,260.26,0.75426,-0.17807,0.63197,355.56,#32,-0.57263,0.39228,0.71987,251,0.013664,0.88253,-0.47005,244.78,-0.8197,-0.25933,-0.51072,104.36,#33,-0.038137,0.97184,0.23255,237.55,-0.36116,-0.23039,0.9036,301.16,0.93173,-0.049526,0.35977,104.34,#34,-0.62255,0.109,-0.77495,265.67,0.2174,0.97536,-0.037457,329.15,0.75178,-0.19179,-0.63091,87.887,#35,0.87297,-0.3286,0.36048,238.36,-0.47792,-0.42846,0.76682,301.48,-0.097522,-0.84169,-0.53108,103.2 |
| 25007 | | |
| 25008 | | > ui mousemode right "translate selected models" |
| 25009 | | |
| 25010 | | > view matrix models |
| 25011 | | > #24,-0.98931,0.016977,0.14485,375.13,-0.11261,-0.72008,-0.6847,541.14,0.09268,-0.69369,0.71429,117.18,#26,-0.94925,-0.3078,-0.064668,253.43,0.31144,-0.94857,-0.056799,182.99,-0.043859,-0.074057,0.99629,133.32,#27,-0.10406,0.73736,-0.66743,242.31,0.71612,-0.41014,-0.56477,212.68,-0.69018,-0.53673,-0.48536,159.99,#28,-0.065652,-0.13638,-0.98848,279.04,-0.0093562,0.99066,-0.13605,260.27,0.9978,0.00031621,-0.066314,117.24,#29,0.86271,0.39675,-0.31357,170,0.27179,0.15914,0.94911,221.66,0.42646,-0.90403,0.029464,161.33,#30,0.017727,0.16279,0.9865,226.2,0.70393,0.69865,-0.12794,228.82,-0.71005,0.6967,-0.10221,181.99,#31,0.034803,-0.95032,-0.30931,541.29,0.65566,0.25529,-0.71059,151.02,0.75426,-0.17807,0.63197,378.09,#32,-0.57263,0.39228,0.71987,196.23,0.013664,0.88253,-0.47005,135.54,-0.8197,-0.25933,-0.51072,126.89,#33,-0.038137,0.97184,0.23255,182.78,-0.36116,-0.23039,0.9036,191.92,0.93173,-0.049526,0.35977,126.87,#34,-0.62255,0.109,-0.77495,210.9,0.2174,0.97536,-0.037457,219.91,0.75178,-0.19179,-0.63091,110.42,#35,0.87297,-0.3286,0.36048,183.59,-0.47792,-0.42846,0.76682,192.24,-0.097522,-0.84169,-0.53108,125.73 |
| 25012 | | |
| 25013 | | > view matrix models |
| 25014 | | > #24,-0.98931,0.016977,0.14485,423.79,-0.11261,-0.72008,-0.6847,480.35,0.09268,-0.69369,0.71429,65.778,#26,-0.94925,-0.3078,-0.064668,302.09,0.31144,-0.94857,-0.056799,122.2,-0.043859,-0.074057,0.99629,81.923,#27,-0.10406,0.73736,-0.66743,290.96,0.71612,-0.41014,-0.56477,151.89,-0.69018,-0.53673,-0.48536,108.59,#28,-0.065652,-0.13638,-0.98848,327.7,-0.0093562,0.99066,-0.13605,199.48,0.9978,0.00031621,-0.066314,65.842,#29,0.86271,0.39675,-0.31357,218.65,0.27179,0.15914,0.94911,160.87,0.42646,-0.90403,0.029464,109.93,#30,0.017727,0.16279,0.9865,274.86,0.70393,0.69865,-0.12794,168.03,-0.71005,0.6967,-0.10221,130.59,#31,0.034803,-0.95032,-0.30931,589.95,0.65566,0.25529,-0.71059,90.231,0.75426,-0.17807,0.63197,326.69,#32,-0.57263,0.39228,0.71987,244.89,0.013664,0.88253,-0.47005,74.753,-0.8197,-0.25933,-0.51072,75.489,#33,-0.038137,0.97184,0.23255,231.43,-0.36116,-0.23039,0.9036,131.13,0.93173,-0.049526,0.35977,75.47,#34,-0.62255,0.109,-0.77495,259.56,0.2174,0.97536,-0.037457,159.12,0.75178,-0.19179,-0.63091,59.017,#35,0.87297,-0.3286,0.36048,232.24,-0.47792,-0.42846,0.76682,131.45,-0.097522,-0.84169,-0.53108,74.333 |
| 25015 | | |
| 25016 | | > view matrix models |
| 25017 | | > #24,-0.98931,0.016977,0.14485,437.27,-0.11261,-0.72008,-0.6847,518.06,0.09268,-0.69369,0.71429,168.29,#26,-0.94925,-0.3078,-0.064668,315.57,0.31144,-0.94857,-0.056799,159.91,-0.043859,-0.074057,0.99629,184.43,#27,-0.10406,0.73736,-0.66743,304.44,0.71612,-0.41014,-0.56477,189.6,-0.69018,-0.53673,-0.48536,211.1,#28,-0.065652,-0.13638,-0.98848,341.17,-0.0093562,0.99066,-0.13605,237.19,0.9978,0.00031621,-0.066314,168.35,#29,0.86271,0.39675,-0.31357,232.13,0.27179,0.15914,0.94911,198.58,0.42646,-0.90403,0.029464,212.44,#30,0.017727,0.16279,0.9865,288.34,0.70393,0.69865,-0.12794,205.74,-0.71005,0.6967,-0.10221,233.1,#31,0.034803,-0.95032,-0.30931,603.43,0.65566,0.25529,-0.71059,127.94,0.75426,-0.17807,0.63197,429.2,#32,-0.57263,0.39228,0.71987,258.36,0.013664,0.88253,-0.47005,112.46,-0.8197,-0.25933,-0.51072,178,#33,-0.038137,0.97184,0.23255,244.91,-0.36116,-0.23039,0.9036,168.84,0.93173,-0.049526,0.35977,177.98,#34,-0.62255,0.109,-0.77495,273.03,0.2174,0.97536,-0.037457,196.83,0.75178,-0.19179,-0.63091,161.53,#35,0.87297,-0.3286,0.36048,245.72,-0.47792,-0.42846,0.76682,169.16,-0.097522,-0.84169,-0.53108,176.84 |
| 25018 | | |
| 25019 | | > view matrix models |
| 25020 | | > #24,-0.98931,0.016977,0.14485,536.59,-0.11261,-0.72008,-0.6847,508.95,0.09268,-0.69369,0.71429,127.66,#26,-0.94925,-0.3078,-0.064668,414.89,0.31144,-0.94857,-0.056799,150.8,-0.043859,-0.074057,0.99629,143.81,#27,-0.10406,0.73736,-0.66743,403.76,0.71612,-0.41014,-0.56477,180.49,-0.69018,-0.53673,-0.48536,170.47,#28,-0.065652,-0.13638,-0.98848,440.49,-0.0093562,0.99066,-0.13605,228.09,0.9978,0.00031621,-0.066314,127.73,#29,0.86271,0.39675,-0.31357,331.45,0.27179,0.15914,0.94911,189.48,0.42646,-0.90403,0.029464,171.82,#30,0.017727,0.16279,0.9865,387.66,0.70393,0.69865,-0.12794,196.64,-0.71005,0.6967,-0.10221,192.48,#31,0.034803,-0.95032,-0.30931,702.75,0.65566,0.25529,-0.71059,118.84,0.75426,-0.17807,0.63197,388.58,#32,-0.57263,0.39228,0.71987,357.69,0.013664,0.88253,-0.47005,103.36,-0.8197,-0.25933,-0.51072,137.37,#33,-0.038137,0.97184,0.23255,344.23,-0.36116,-0.23039,0.9036,159.73,0.93173,-0.049526,0.35977,137.36,#34,-0.62255,0.109,-0.77495,372.35,0.2174,0.97536,-0.037457,187.73,0.75178,-0.19179,-0.63091,120.9,#35,0.87297,-0.3286,0.36048,345.04,-0.47792,-0.42846,0.76682,160.05,-0.097522,-0.84169,-0.53108,136.22 |
| 25021 | | |
| 25022 | | > view matrix models |
| 25023 | | > #24,-0.98931,0.016977,0.14485,527.42,-0.11261,-0.72008,-0.6847,440.8,0.09268,-0.69369,0.71429,180.79,#26,-0.94925,-0.3078,-0.064668,405.72,0.31144,-0.94857,-0.056799,82.645,-0.043859,-0.074057,0.99629,196.94,#27,-0.10406,0.73736,-0.66743,394.59,0.71612,-0.41014,-0.56477,112.34,-0.69018,-0.53673,-0.48536,223.6,#28,-0.065652,-0.13638,-0.98848,431.33,-0.0093562,0.99066,-0.13605,159.93,0.9978,0.00031621,-0.066314,180.86,#29,0.86271,0.39675,-0.31357,322.28,0.27179,0.15914,0.94911,121.32,0.42646,-0.90403,0.029464,224.94,#30,0.017727,0.16279,0.9865,378.49,0.70393,0.69865,-0.12794,128.48,-0.71005,0.6967,-0.10221,245.6,#31,0.034803,-0.95032,-0.30931,693.58,0.65566,0.25529,-0.71059,50.679,0.75426,-0.17807,0.63197,441.7,#32,-0.57263,0.39228,0.71987,348.52,0.013664,0.88253,-0.47005,35.202,-0.8197,-0.25933,-0.51072,190.5,#33,-0.038137,0.97184,0.23255,335.06,-0.36116,-0.23039,0.9036,91.575,0.93173,-0.049526,0.35977,190.48,#34,-0.62255,0.109,-0.77495,363.19,0.2174,0.97536,-0.037457,119.57,0.75178,-0.19179,-0.63091,174.03,#35,0.87297,-0.3286,0.36048,335.87,-0.47792,-0.42846,0.76682,91.895,-0.097522,-0.84169,-0.53108,189.35 |
| 25024 | | |
| 25025 | | > view matrix models |
| 25026 | | > #24,-0.98931,0.016977,0.14485,544.07,-0.11261,-0.72008,-0.6847,456.24,0.09268,-0.69369,0.71429,217.95,#26,-0.94925,-0.3078,-0.064668,422.37,0.31144,-0.94857,-0.056799,98.086,-0.043859,-0.074057,0.99629,234.09,#27,-0.10406,0.73736,-0.66743,411.24,0.71612,-0.41014,-0.56477,127.78,-0.69018,-0.53673,-0.48536,260.76,#28,-0.065652,-0.13638,-0.98848,447.98,-0.0093562,0.99066,-0.13605,175.37,0.9978,0.00031621,-0.066314,218.01,#29,0.86271,0.39675,-0.31357,338.93,0.27179,0.15914,0.94911,136.76,0.42646,-0.90403,0.029464,262.1,#30,0.017727,0.16279,0.9865,395.14,0.70393,0.69865,-0.12794,143.92,-0.71005,0.6967,-0.10221,282.76,#31,0.034803,-0.95032,-0.30931,710.23,0.65566,0.25529,-0.71059,66.12,0.75426,-0.17807,0.63197,478.86,#32,-0.57263,0.39228,0.71987,365.17,0.013664,0.88253,-0.47005,50.643,-0.8197,-0.25933,-0.51072,227.66,#33,-0.038137,0.97184,0.23255,351.71,-0.36116,-0.23039,0.9036,107.02,0.93173,-0.049526,0.35977,227.64,#34,-0.62255,0.109,-0.77495,379.84,0.2174,0.97536,-0.037457,135.01,0.75178,-0.19179,-0.63091,211.19,#35,0.87297,-0.3286,0.36048,352.52,-0.47792,-0.42846,0.76682,107.34,-0.097522,-0.84169,-0.53108,226.5 |
| 25027 | | |
| 25028 | | > view matrix models |
| 25029 | | > #24,-0.98931,0.016977,0.14485,568.38,-0.11261,-0.72008,-0.6847,445.69,0.09268,-0.69369,0.71429,198.08,#26,-0.94925,-0.3078,-0.064668,446.68,0.31144,-0.94857,-0.056799,87.54,-0.043859,-0.074057,0.99629,214.22,#27,-0.10406,0.73736,-0.66743,435.56,0.71612,-0.41014,-0.56477,117.23,-0.69018,-0.53673,-0.48536,240.89,#28,-0.065652,-0.13638,-0.98848,472.29,-0.0093562,0.99066,-0.13605,164.83,0.9978,0.00031621,-0.066314,198.14,#29,0.86271,0.39675,-0.31357,363.25,0.27179,0.15914,0.94911,126.21,0.42646,-0.90403,0.029464,242.23,#30,0.017727,0.16279,0.9865,419.45,0.70393,0.69865,-0.12794,133.38,-0.71005,0.6967,-0.10221,262.89,#31,0.034803,-0.95032,-0.30931,734.54,0.65566,0.25529,-0.71059,55.574,0.75426,-0.17807,0.63197,458.99,#32,-0.57263,0.39228,0.71987,389.48,0.013664,0.88253,-0.47005,40.096,-0.8197,-0.25933,-0.51072,207.79,#33,-0.038137,0.97184,0.23255,376.03,-0.36116,-0.23039,0.9036,96.469,0.93173,-0.049526,0.35977,207.77,#34,-0.62255,0.109,-0.77495,404.15,0.2174,0.97536,-0.037457,124.47,0.75178,-0.19179,-0.63091,191.32,#35,0.87297,-0.3286,0.36048,376.84,-0.47792,-0.42846,0.76682,96.79,-0.097522,-0.84169,-0.53108,206.63 |
| 25030 | | |
| 25031 | | > ui mousemode right "rotate selected models" |
| 25032 | | |
| 25033 | | > view matrix models |
| 25034 | | > #24,-0.97564,0.21001,-0.06349,572.38,-0.096474,-0.67055,-0.73556,443.5,-0.19705,-0.71151,0.67448,271.29,#26,-0.89787,-0.27651,-0.34258,450.3,0.335,-0.93401,-0.12413,87.914,-0.28565,-0.22622,0.93125,226.55,#27,0.095913,0.85775,-0.50503,432.18,0.76431,-0.3885,-0.51468,115.93,-0.63767,-0.33664,-0.69285,251.11,#28,-0.34385,-0.12886,-0.93014,479.56,-0.076894,0.99108,-0.10888,165.53,0.93587,0.034085,-0.35069,223.96,#29,0.70838,0.63548,-0.30718,362.44,0.22216,0.21235,0.95161,126.42,0.66996,-0.74234,0.009246,232.76,#30,0.21834,-0.038402,0.97512,410.57,0.7508,0.64493,-0.14272,130.87,-0.6234,0.76327,0.16965,268.82,#31,-0.17751,-0.86125,-0.47618,657.56,0.60095,0.28831,-0.74548,32.623,0.77933,-0.41849,0.46639,539.25,#32,-0.31874,0.45127,0.83352,397.12,0.083221,0.88932,-0.44966,42.328,-0.94418,-0.073957,-0.32102,200.89,#33,-0.2996,0.946,0.12379,384.34,-0.42381,-0.24821,0.87108,98.855,0.85477,0.20851,0.47529,201.2,#34,-0.80851,0.16063,-0.56613,416.01,0.1788,0.9836,0.023723,127.28,0.56066,-0.082046,-0.82397,195.38,#35,0.86412,-0.079317,0.497,385.43,-0.48954,-0.3617,0.79343,99.235,0.11683,-0.92892,-0.35138,200.36 |
| 25035 | | |
| 25036 | | > view matrix models |
| 25037 | | > #24,-0.98154,0.19029,0.019121,559.31,-0.13926,-0.64266,-0.75339,450.74,-0.13107,-0.74215,0.65729,267.51,#26,-0.93061,-0.24768,-0.26947,451.2,0.29744,-0.94081,-0.16248,90.772,-0.21328,-0.23135,0.9492,221.87,#27,0.014445,0.84902,-0.52817,433.58,0.78282,-0.33823,-0.5223,117.29,-0.62208,-0.40591,-0.66951,248.38,#28,-0.27262,-0.17253,-0.94653,476.53,-0.11548,0.98255,-0.14583,169.76,0.95516,0.069549,-0.28779,219.33,#29,0.74289,0.57056,-0.35011,362.29,0.24065,0.26041,0.93502,124.8,0.62466,-0.77887,0.056152,235.22,#30,0.13808,-0.014425,0.99032,412.6,0.77495,0.62422,-0.098957,130.74,-0.61675,0.78111,0.097369,267.95,#31,-0.14982,-0.90135,-0.40636,682.49,0.57315,0.25572,-0.77853,38.333,0.80564,-0.34955,0.47829,517.77,#32,-0.38845,0.40262,0.82885,398.54,0.089699,0.91174,-0.40085,43.262,-0.91709,-0.081363,-0.39028,198.77,#33,-0.21799,0.96902,0.11614,383.17,-0.45783,-0.20663,0.8647,99.077,0.8619,0.13532,0.48869,201.48,#34,-0.77422,0.10803,-0.62363,412.98,0.12599,0.99191,0.015412,129.14,0.62025,-0.06664,-0.78157,194.23,#35,0.89226,-0.12792,0.43301,384.19,-0.44945,-0.34325,0.82473,99.53,0.043137,-0.93049,-0.36377,200.58 |
| 25038 | | |
| 25039 | | > view matrix models |
| 25040 | | > #24,-0.97911,0.19244,0.065625,548.05,-0.17488,-0.63246,-0.75459,456.39,-0.1037,-0.75031,0.65291,264.41,#26,-0.94664,-0.21946,-0.23601,451.98,0.26371,-0.94845,-0.1758,92.856,-0.18526,-0.22865,0.95572,220.16,#27,-0.032168,0.8489,-0.52758,434.16,0.7851,-0.3052,-0.53895,118.61,-0.61853,-0.43154,-0.65665,247.29,#28,-0.24071,-0.20646,-0.94838,474.31,-0.12897,0.97525,-0.17957,172.74,0.96199,0.079089,-0.26139,217.28,#29,0.75113,0.53805,-0.38249,362.3,0.26558,0.28414,0.92127,123.53,0.60437,-0.79357,0.070534,236.2,#30,0.091772,-0.014971,0.99567,413.27,0.78178,0.62039,-0.06273,131.2,-0.61676,0.78415,0.068638,267.51,#31,-0.14764,-0.91978,-0.3636,693.42,0.56426,0.2236,-0.79474,47.892,0.81229,-0.3225,0.48599,509.1,#32,-0.41761,0.36634,0.8315,400.46,0.078691,0.92626,-0.36857,43.522,-0.90521,-0.088486,-0.41564,198.35,#33,-0.17622,0.97944,0.098234,383.13,-0.46873,-0.17125,0.86658,98.721,0.86559,0.10667,0.48927,201.76,#34,-0.76024,0.069547,-0.64591,411.6,0.095072,0.99546,-0.0047163,129.89,0.64265,-0.064994,-0.7634,193.81,#35,0.90905,-0.14182,0.39181,384.1,-0.4164,-0.34431,0.84147,99.214,0.015563,-0.92808,-0.37205,200.84 |
| 25041 | | |
| 25042 | | > ui mousemode right "translate selected models" |
| 25043 | | |
| 25044 | | > view matrix models |
| 25045 | | > #24,-0.97911,0.19244,0.065625,555.1,-0.17488,-0.63246,-0.75459,467.12,-0.1037,-0.75031,0.65291,270.09,#26,-0.94664,-0.21946,-0.23601,459.03,0.26371,-0.94845,-0.1758,103.59,-0.18526,-0.22865,0.95572,225.84,#27,-0.032168,0.8489,-0.52758,441.21,0.7851,-0.3052,-0.53895,129.34,-0.61853,-0.43154,-0.65665,252.96,#28,-0.24071,-0.20646,-0.94838,481.35,-0.12897,0.97525,-0.17957,183.47,0.96199,0.079089,-0.26139,222.96,#29,0.75113,0.53805,-0.38249,369.34,0.26558,0.28414,0.92127,134.26,0.60437,-0.79357,0.070534,241.88,#30,0.091772,-0.014971,0.99567,420.32,0.78178,0.62039,-0.06273,141.94,-0.61676,0.78415,0.068638,273.19,#31,-0.14764,-0.91978,-0.3636,700.47,0.56426,0.2236,-0.79474,58.624,0.81229,-0.3225,0.48599,514.77,#32,-0.41761,0.36634,0.8315,407.51,0.078691,0.92626,-0.36857,54.254,-0.90521,-0.088486,-0.41564,204.03,#33,-0.17622,0.97944,0.098234,390.18,-0.46873,-0.17125,0.86658,109.45,0.86559,0.10667,0.48927,207.44,#34,-0.76024,0.069547,-0.64591,418.65,0.095072,0.99546,-0.0047163,140.63,0.64265,-0.064994,-0.7634,199.49,#35,0.90905,-0.14182,0.39181,391.15,-0.4164,-0.34431,0.84147,109.95,0.015563,-0.92808,-0.37205,206.51 |
| 25046 | | |
| 25047 | | > view matrix models |
| 25048 | | > #24,-0.97911,0.19244,0.065625,534.22,-0.17488,-0.63246,-0.75459,468.5,-0.1037,-0.75031,0.65291,261.02,#26,-0.94664,-0.21946,-0.23601,438.15,0.26371,-0.94845,-0.1758,104.97,-0.18526,-0.22865,0.95572,216.78,#27,-0.032168,0.8489,-0.52758,420.33,0.7851,-0.3052,-0.53895,130.72,-0.61853,-0.43154,-0.65665,243.9,#28,-0.24071,-0.20646,-0.94838,460.48,-0.12897,0.97525,-0.17957,184.85,0.96199,0.079089,-0.26139,213.9,#29,0.75113,0.53805,-0.38249,348.47,0.26558,0.28414,0.92127,135.64,0.60437,-0.79357,0.070534,232.82,#30,0.091772,-0.014971,0.99567,399.44,0.78178,0.62039,-0.06273,143.31,-0.61676,0.78415,0.068638,264.13,#31,-0.14764,-0.91978,-0.3636,679.59,0.56426,0.2236,-0.79474,60.002,0.81229,-0.3225,0.48599,505.71,#32,-0.41761,0.36634,0.8315,386.63,0.078691,0.92626,-0.36857,55.632,-0.90521,-0.088486,-0.41564,194.97,#33,-0.17622,0.97944,0.098234,369.3,-0.46873,-0.17125,0.86658,110.83,0.86559,0.10667,0.48927,198.38,#34,-0.76024,0.069547,-0.64591,397.77,0.095072,0.99546,-0.0047163,142,0.64265,-0.064994,-0.7634,190.43,#35,0.90905,-0.14182,0.39181,370.28,-0.4164,-0.34431,0.84147,111.32,0.015563,-0.92808,-0.37205,197.45 |
| 25049 | | |
| 25050 | | > view matrix models |
| 25051 | | > #24,-0.97911,0.19244,0.065625,532.75,-0.17488,-0.63246,-0.75459,471.05,-0.1037,-0.75031,0.65291,262.31,#26,-0.94664,-0.21946,-0.23601,436.68,0.26371,-0.94845,-0.1758,107.52,-0.18526,-0.22865,0.95572,218.07,#27,-0.032168,0.8489,-0.52758,418.86,0.7851,-0.3052,-0.53895,133.27,-0.61853,-0.43154,-0.65665,245.19,#28,-0.24071,-0.20646,-0.94838,459.01,-0.12897,0.97525,-0.17957,187.4,0.96199,0.079089,-0.26139,215.19,#29,0.75113,0.53805,-0.38249,347,0.26558,0.28414,0.92127,138.19,0.60437,-0.79357,0.070534,234.11,#30,0.091772,-0.014971,0.99567,397.97,0.78178,0.62039,-0.06273,145.87,-0.61676,0.78415,0.068638,265.41,#31,-0.14764,-0.91978,-0.3636,678.13,0.56426,0.2236,-0.79474,62.557,0.81229,-0.3225,0.48599,507,#32,-0.41761,0.36634,0.8315,385.16,0.078691,0.92626,-0.36857,58.186,-0.90521,-0.088486,-0.41564,196.25,#33,-0.17622,0.97944,0.098234,367.83,-0.46873,-0.17125,0.86658,113.39,0.86559,0.10667,0.48927,199.67,#34,-0.76024,0.069547,-0.64591,396.3,0.095072,0.99546,-0.0047163,144.56,0.64265,-0.064994,-0.7634,191.71,#35,0.90905,-0.14182,0.39181,368.81,-0.4164,-0.34431,0.84147,113.88,0.015563,-0.92808,-0.37205,198.74 |
| 25052 | | |
| 25053 | | > ui mousemode right "rotate selected models" |
| 25054 | | |
| 25055 | | > view matrix models |
| 25056 | | > #24,-0.97974,0.1466,-0.13649,587.06,-0.031522,-0.78578,-0.61771,441.89,-0.1978,-0.60089,0.77447,224.61,#26,-0.86036,-0.36471,-0.35605,431.35,0.37262,-0.9267,0.048836,96.839,-0.34776,-0.090653,0.93319,230.73,#27,0.17141,0.81731,-0.5501,415.94,0.6484,-0.51398,-0.56161,129.79,-0.74175,-0.26042,-0.61805,250.56,#28,-0.35276,-0.032618,-0.93514,467.98,0.096137,0.99284,-0.070896,170.07,0.93076,-0.11491,-0.3471,217.23,#29,0.72431,0.65548,-0.21384,347.6,0.25095,0.038246,0.96725,144.02,0.64219,-0.75425,-0.13679,229.63,#30,0.29192,0.021565,0.9562,395.81,0.62557,0.75194,-0.20794,149.19,-0.72349,0.65888,0.20601,265.48,#31,-0.12119,-0.82798,-0.54751,631.27,0.72426,0.30343,-0.61918,69.206,0.67879,-0.47158,0.5629,551.77,#32,-0.30609,0.53532,0.78723,374.1,-0.028165,0.82147,-0.56956,53.209,-0.95159,-0.19651,-0.23636,211.15,#33,-0.34196,0.9169,0.2058,366.83,-0.2616,-0.30323,0.91631,110.11,0.90257,0.2595,0.34355,202.88,#34,-0.7893,0.25518,-0.55846,401.13,0.3362,0.9407,-0.045343,134.22,0.51377,-0.22355,-0.82829,193.49,#35,0.81239,-0.11082,0.57249,367.97,-0.54662,-0.48659,0.68149,110.26,0.20304,-0.86657,-0.45588,202.02 |
| 25057 | | |
| 25058 | | > ui mousemode right "translate selected models" |
| 25059 | | |
| 25060 | | > view matrix models |
| 25061 | | > #24,-0.97974,0.1466,-0.13649,598.55,-0.031522,-0.78578,-0.61771,434.37,-0.1978,-0.60089,0.77447,224.04,#26,-0.86036,-0.36471,-0.35605,442.83,0.37262,-0.9267,0.048836,89.316,-0.34776,-0.090653,0.93319,230.15,#27,0.17141,0.81731,-0.5501,427.43,0.6484,-0.51398,-0.56161,122.27,-0.74175,-0.26042,-0.61805,249.98,#28,-0.35276,-0.032618,-0.93514,479.47,0.096137,0.99284,-0.070896,162.55,0.93076,-0.11491,-0.3471,216.65,#29,0.72431,0.65548,-0.21384,359.08,0.25095,0.038246,0.96725,136.5,0.64219,-0.75425,-0.13679,229.06,#30,0.29192,0.021565,0.9562,407.3,0.62557,0.75194,-0.20794,141.66,-0.72349,0.65888,0.20601,264.91,#31,-0.12119,-0.82798,-0.54751,642.75,0.72426,0.30343,-0.61918,61.683,0.67879,-0.47158,0.5629,551.19,#32,-0.30609,0.53532,0.78723,385.59,-0.028165,0.82147,-0.56956,45.685,-0.95159,-0.19651,-0.23636,210.58,#33,-0.34196,0.9169,0.2058,378.32,-0.2616,-0.30323,0.91631,102.59,0.90257,0.2595,0.34355,202.31,#34,-0.7893,0.25518,-0.55846,412.62,0.3362,0.9407,-0.045343,126.69,0.51377,-0.22355,-0.82829,192.91,#35,0.81239,-0.11082,0.57249,379.45,-0.54662,-0.48659,0.68149,102.73,0.20304,-0.86657,-0.45588,201.44 |
| 25062 | | |
| 25063 | | > view matrix models |
| 25064 | | > #24,-0.97974,0.1466,-0.13649,602.11,-0.031522,-0.78578,-0.61771,441.2,-0.1978,-0.60089,0.77447,223.29,#26,-0.86036,-0.36471,-0.35605,446.4,0.37262,-0.9267,0.048836,96.149,-0.34776,-0.090653,0.93319,229.4,#27,0.17141,0.81731,-0.5501,430.99,0.6484,-0.51398,-0.56161,129.1,-0.74175,-0.26042,-0.61805,249.23,#28,-0.35276,-0.032618,-0.93514,483.03,0.096137,0.99284,-0.070896,169.38,0.93076,-0.11491,-0.3471,215.9,#29,0.72431,0.65548,-0.21384,362.65,0.25095,0.038246,0.96725,143.33,0.64219,-0.75425,-0.13679,228.31,#30,0.29192,0.021565,0.9562,410.87,0.62557,0.75194,-0.20794,148.49,-0.72349,0.65888,0.20601,264.16,#31,-0.12119,-0.82798,-0.54751,646.32,0.72426,0.30343,-0.61918,68.516,0.67879,-0.47158,0.5629,550.44,#32,-0.30609,0.53532,0.78723,389.15,-0.028165,0.82147,-0.56956,52.518,-0.95159,-0.19651,-0.23636,209.83,#33,-0.34196,0.9169,0.2058,381.89,-0.2616,-0.30323,0.91631,109.42,0.90257,0.2595,0.34355,201.56,#34,-0.7893,0.25518,-0.55846,416.18,0.3362,0.9407,-0.045343,133.52,0.51377,-0.22355,-0.82829,192.16,#35,0.81239,-0.11082,0.57249,383.02,-0.54662,-0.48659,0.68149,109.56,0.20304,-0.86657,-0.45588,200.69 |
| 25065 | | |
| 25066 | | > ui mousemode right "rotate selected models" |
| 25067 | | |
| 25068 | | > view matrix models |
| 25069 | | > #24,-0.92771,0.27918,-0.24781,588.87,0.12527,-0.39253,-0.91117,393.26,-0.35165,-0.87635,0.32918,410.47,#26,-0.79884,-0.30844,-0.51644,447.41,0.54328,-0.73852,-0.39929,99.671,-0.25825,-0.59954,0.75753,217.76,#27,0.27526,0.86888,-0.41142,427.54,0.91965,-0.36269,-0.15066,119.3,-0.28012,-0.3369,-0.89891,248.36,#28,-0.51454,-0.048629,-0.85609,483.11,-0.35724,0.91977,0.16247,167.82,0.77951,0.38943,-0.49063,248.89,#29,0.59004,0.77623,-0.22208,363.47,-0.14046,0.36957,0.91853,145.81,0.79506,-0.51077,0.32709,225.92,#30,0.39143,-0.12273,0.91199,404.4,0.88409,0.3251,-0.3357,129.87,-0.25529,0.93768,0.23575,267.24,#31,-0.26563,-0.74261,-0.61479,588.53,0.29922,0.5427,-0.78482,-94.256,0.91646,-0.39243,0.078041,511.49,#32,-0.1324,0.53076,0.83712,396.16,0.46333,0.77974,-0.4211,74.712,-0.87624,0.33211,-0.34915,169.65,#33,-0.48569,0.86744,0.10796,388.37,-0.65417,-0.44261,0.61331,128.56,0.57979,0.22725,0.78243,189.61,#34,-0.87938,0.25553,-0.40174,422.86,0.081619,0.91219,0.40156,152.2,0.46907,0.32034,-0.82302,199.45,#35,0.7836,0.061687,0.6182,389.63,-0.61995,0.012767,0.78454,129.05,0.040504,-0.99801,0.048247,189.14 |
| 25070 | | |
| 25071 | | > view matrix models |
| 25072 | | > #24,-0.92217,0.27128,-0.27571,595.51,0.14647,-0.41479,-0.89805,390.44,-0.35798,-0.86854,0.34277,407.19,#26,-0.78154,-0.32736,-0.53107,446.34,0.56203,-0.73894,-0.37161,97.984,-0.27078,-0.5889,0.76149,218.61,#27,0.30319,0.85933,-0.41186,426.93,0.90653,-0.39332,-0.1533,118.69,-0.29373,-0.32689,-0.89826,248.79,#28,-0.52803,-0.023377,-0.8489,483.89,-0.32928,0.92705,0.17929,165.56,0.78279,0.3742,-0.49721,248.8,#29,0.58233,0.78884,-0.19653,363.75,-0.14456,0.33838,0.92984,146.68,0.79999,-0.51307,0.31108,225.63,#30,0.41816,-0.11712,0.90079,404.02,0.86801,0.34385,-0.35823,130.23,-0.26778,0.93169,0.24545,267.4,#31,-0.26063,-0.72478,-0.63778,580.5,0.3218,0.55761,-0.76519,-95.137,0.91023,-0.40467,0.0879,516.11,#32,-0.11512,0.55191,0.82592,394.59,0.45258,0.76928,-0.45098,73.745,-0.88426,0.32188,-0.33834,170.67,#33,-0.50703,0.85317,0.12254,388.29,-0.63016,-0.46392,0.62263,128.12,0.58806,0.23847,0.77286,189.72,#34,-0.87859,0.28072,-0.38637,423.42,0.11488,0.90948,0.39957,150.9,0.46356,0.30667,-0.8313,199.33,#35,0.76498,0.066234,0.64064,389.56,-0.64177,-0.0053799,0.76688,128.56,0.05424,-0.99779,0.038391,189.25 |
| 25073 | | |
| 25074 | | > ui mousemode right "translate selected models" |
| 25075 | | |
| 25076 | | > view matrix models |
| 25077 | | > #24,-0.92217,0.27128,-0.27571,587.68,0.14647,-0.41479,-0.89805,391.66,-0.35798,-0.86854,0.34277,412.03,#26,-0.78154,-0.32736,-0.53107,438.51,0.56203,-0.73894,-0.37161,99.205,-0.27078,-0.5889,0.76149,223.46,#27,0.30319,0.85933,-0.41186,419.1,0.90653,-0.39332,-0.1533,119.91,-0.29373,-0.32689,-0.89826,253.64,#28,-0.52803,-0.023377,-0.8489,476.06,-0.32928,0.92705,0.17929,166.78,0.78279,0.3742,-0.49721,253.64,#29,0.58233,0.78884,-0.19653,355.93,-0.14456,0.33838,0.92984,147.9,0.79999,-0.51307,0.31108,230.47,#30,0.41816,-0.11712,0.90079,396.19,0.86801,0.34385,-0.35823,131.45,-0.26778,0.93169,0.24545,272.24,#31,-0.26063,-0.72478,-0.63778,572.67,0.3218,0.55761,-0.76519,-93.916,0.91023,-0.40467,0.0879,520.95,#32,-0.11512,0.55191,0.82592,386.76,0.45258,0.76928,-0.45098,74.966,-0.88426,0.32188,-0.33834,175.52,#33,-0.50703,0.85317,0.12254,380.46,-0.63016,-0.46392,0.62263,129.34,0.58806,0.23847,0.77286,194.56,#34,-0.87859,0.28072,-0.38637,415.59,0.11488,0.90948,0.39957,152.12,0.46356,0.30667,-0.8313,204.18,#35,0.76498,0.066234,0.64064,381.73,-0.64177,-0.0053799,0.76688,129.78,0.05424,-0.99779,0.038391,194.09 |
| 25078 | | |
| 25079 | | > ui mousemode right "rotate selected models" |
| 25080 | | |
| 25081 | | > view matrix models |
| 25082 | | > #24,-0.95958,0.23013,-0.16201,578.69,0.059806,-0.39576,-0.9164,410.02,-0.27501,-0.88905,0.366,393.67,#26,-0.85001,-0.30973,-0.4261,440.58,0.48705,-0.77025,-0.41171,103.77,-0.20068,-0.55749,0.80557,219.09,#27,0.19283,0.85925,-0.47382,422.1,0.92773,-0.31692,-0.19717,122.89,-0.31958,-0.40156,-0.85827,250.86,#28,-0.42503,-0.07414,-0.90214,474.36,-0.36911,0.92421,0.09795,174.71,0.8265,0.37462,-0.42019,245.82,#29,0.66123,0.70669,-0.25172,354.86,-0.084911,0.40389,0.91086,144.88,0.74536,-0.58091,0.32707,233.37,#30,0.31265,-0.06523,0.94763,399.97,0.89994,0.33952,-0.27355,132.47,-0.30389,0.93833,0.16485,271.42,#31,-0.20749,-0.8051,-0.55566,617.35,0.30445,0.48667,-0.81882,-74.021,0.92966,-0.33907,0.14413,503.58,#32,-0.23306,0.50621,0.83032,387.21,0.4331,0.81851,-0.37745,74.575,-0.8707,0.27164,-0.41,175.92,#33,-0.39412,0.90934,0.13328,377.71,-0.66846,-0.38315,0.63746,128.31,0.63074,0.16214,0.75887,195.44,#34,-0.84111,0.22317,-0.49268,411.35,0.039009,0.93356,0.35628,154.24,0.53945,0.28045,-0.79394,201.9,#35,0.82172,-0.021711,0.56948,378.9,-0.56973,-0.0075706,0.8218,128.87,-0.013531,-0.99974,-0.01859,194.86 |
| 25083 | | |
| 25084 | | > view matrix models |
| 25085 | | > #24,-0.95978,0.23023,-0.16071,578.43,0.057941,-0.39767,-0.9157,410.65,-0.27473,-0.88818,0.36833,392.92,#26,-0.8507,-0.30902,-0.42523,440.61,0.4855,-0.772,-0.41025,103.8,-0.2015,-0.55545,0.80677,219.15,#27,0.19154,0.85946,-0.47396,422.13,0.92718,-0.31685,-0.19987,122.97,-0.32196,-0.40116,-0.85756,250.89,#28,-0.42421,-0.075115,-0.90245,474.32,-0.3676,0.92504,0.095798,174.84,0.8276,0.37237,-0.42002,245.69,#29,0.66167,0.70593,-0.2527,354.85,-0.082254,0.40333,0.91135,144.84,0.74527,-0.58223,0.32494,233.37,#30,0.3114,-0.065229,0.94804,400,0.89958,0.34175,-0.27197,132.57,-0.30625,0.93752,0.1651,271.43,#31,-0.20745,-0.80586,-0.55458,617.73,0.30648,0.48484,-0.81915,-73.077,0.929,-0.3399,0.1464,504,#32,-0.23399,0.50532,0.8306,387.27,0.43066,0.81981,-0.37743,74.426,-0.87166,0.26939,-0.40944,176.08,#33,-0.39301,0.90989,0.13284,377.71,-0.66739,-0.38163,0.6395,128.2,0.63256,0.16268,0.75723,195.47,#34,-0.84092,0.22214,-0.49347,411.31,0.0393,0.93453,0.35371,154.19,0.53974,0.27805,-0.79459,201.85,#35,0.82242,-0.02215,0.56845,378.89,-0.56875,-0.010064,0.82245,128.75,-0.012497,-0.9997,-0.020875,194.88 |
| 25086 | | |
| 25087 | | > ui mousemode right "translate selected models" |
| 25088 | | |
| 25089 | | > view matrix models |
| 25090 | | > #24,-0.95978,0.23023,-0.16071,579.09,0.057941,-0.39767,-0.9157,408.67,-0.27473,-0.88818,0.36833,388.94,#26,-0.8507,-0.30902,-0.42523,441.28,0.4855,-0.772,-0.41025,101.82,-0.2015,-0.55545,0.80677,215.18,#27,0.19154,0.85946,-0.47396,422.8,0.92718,-0.31685,-0.19987,120.99,-0.32196,-0.40116,-0.85756,246.91,#28,-0.42421,-0.075115,-0.90245,474.99,-0.3676,0.92504,0.095798,172.86,0.8276,0.37237,-0.42002,241.72,#29,0.66167,0.70593,-0.2527,355.52,-0.082254,0.40333,0.91135,142.86,0.74527,-0.58223,0.32494,229.39,#30,0.3114,-0.065229,0.94804,400.66,0.89958,0.34175,-0.27197,130.6,-0.30625,0.93752,0.1651,267.45,#31,-0.20745,-0.80586,-0.55458,618.4,0.30648,0.48484,-0.81915,-75.051,0.929,-0.3399,0.1464,500.03,#32,-0.23399,0.50532,0.8306,387.93,0.43066,0.81981,-0.37743,72.453,-0.87166,0.26939,-0.40944,172.1,#33,-0.39301,0.90989,0.13284,378.38,-0.66739,-0.38163,0.6395,126.23,0.63256,0.16268,0.75723,191.49,#34,-0.84092,0.22214,-0.49347,411.98,0.0393,0.93453,0.35371,152.21,0.53974,0.27805,-0.79459,197.88,#35,0.82242,-0.02215,0.56845,379.56,-0.56875,-0.010064,0.82245,126.78,-0.012497,-0.9997,-0.020875,190.91 |
| 25091 | | |
| 25092 | | > view matrix models |
| 25093 | | > #24,-0.95978,0.23023,-0.16071,578.33,0.057941,-0.39767,-0.9157,406.48,-0.27473,-0.88818,0.36833,390.5,#26,-0.8507,-0.30902,-0.42523,440.52,0.4855,-0.772,-0.41025,99.631,-0.2015,-0.55545,0.80677,216.74,#27,0.19154,0.85946,-0.47396,422.04,0.92718,-0.31685,-0.19987,118.8,-0.32196,-0.40116,-0.85756,248.47,#28,-0.42421,-0.075115,-0.90245,474.23,-0.3676,0.92504,0.095798,170.67,0.8276,0.37237,-0.42002,243.28,#29,0.66167,0.70593,-0.2527,354.76,-0.082254,0.40333,0.91135,140.67,0.74527,-0.58223,0.32494,230.96,#30,0.3114,-0.065229,0.94804,399.91,0.89958,0.34175,-0.27197,128.41,-0.30625,0.93752,0.1651,269.02,#31,-0.20745,-0.80586,-0.55458,617.64,0.30648,0.48484,-0.81915,-77.243,0.929,-0.3399,0.1464,501.59,#32,-0.23399,0.50532,0.8306,387.17,0.43066,0.81981,-0.37743,70.26,-0.87166,0.26939,-0.40944,173.66,#33,-0.39301,0.90989,0.13284,377.62,-0.66739,-0.38163,0.6395,124.03,0.63256,0.16268,0.75723,193.06,#34,-0.84092,0.22214,-0.49347,411.22,0.0393,0.93453,0.35371,150.02,0.53974,0.27805,-0.79459,199.44,#35,0.82242,-0.02215,0.56845,378.8,-0.56875,-0.010064,0.82245,124.59,-0.012497,-0.9997,-0.020875,192.47 |
| 25094 | | |
| 25095 | | > fitmap #24 inMap #25 |
| 25096 | | |
| 25097 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014 |
| 25098 | | points |
| 25099 | | correlation = 0.7376, correlation about mean = 0.2518, overlap = 17.37 |
| 25100 | | steps = 104, shift = 6.57, angle = 11 degrees |
| 25101 | | |
| 25102 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 25103 | | (#25) coordinates: |
| 25104 | | Matrix rotation and translation |
| 25105 | | -0.53717394 -0.84339058 -0.01168334 402.36094944 |
| 25106 | | 0.84310057 -0.53729695 0.02221345 56.76569545 |
| 25107 | | -0.02501204 0.00208226 0.99968499 -108.79516868 |
| 25108 | | Axis -0.01193551 0.00790240 0.99989754 |
| 25109 | | Axis point 184.71498739 138.81057099 0.00000000 |
| 25110 | | Rotation angle (degrees) 122.50634127 |
| 25111 | | Shift along axis -113.13782048 |
| 25112 | | |
| 25113 | | |
| 25114 | | > fitmap #24 inMap #25 |
| 25115 | | |
| 25116 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014 |
| 25117 | | points |
| 25118 | | correlation = 0.7376, correlation about mean = 0.2518, overlap = 17.37 |
| 25119 | | steps = 104, shift = 6.57, angle = 11 degrees |
| 25120 | | |
| 25121 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 25122 | | (#25) coordinates: |
| 25123 | | Matrix rotation and translation |
| 25124 | | -0.53717394 -0.84339058 -0.01168334 402.36094944 |
| 25125 | | 0.84310057 -0.53729695 0.02221345 56.76569545 |
| 25126 | | -0.02501204 0.00208226 0.99968499 -108.79516868 |
| 25127 | | Axis -0.01193551 0.00790240 0.99989754 |
| 25128 | | Axis point 184.71498739 138.81057099 0.00000000 |
| 25129 | | Rotation angle (degrees) 122.50634127 |
| 25130 | | Shift along axis -113.13782048 |
| 25131 | | |
| 25132 | | |
| 25133 | | > fitmap #24 inMap #25 |
| 25134 | | |
| 25135 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014 |
| 25136 | | points |
| 25137 | | correlation = 0.7376, correlation about mean = 0.2518, overlap = 17.37 |
| 25138 | | steps = 104, shift = 6.57, angle = 11 degrees |
| 25139 | | |
| 25140 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 25141 | | (#25) coordinates: |
| 25142 | | Matrix rotation and translation |
| 25143 | | -0.53717394 -0.84339058 -0.01168334 402.36094944 |
| 25144 | | 0.84310057 -0.53729695 0.02221345 56.76569545 |
| 25145 | | -0.02501204 0.00208226 0.99968499 -108.79516868 |
| 25146 | | Axis -0.01193551 0.00790240 0.99989754 |
| 25147 | | Axis point 184.71498739 138.81057099 0.00000000 |
| 25148 | | Rotation angle (degrees) 122.50634127 |
| 25149 | | Shift along axis -113.13782048 |
| 25150 | | |
| 25151 | | |
| 25152 | | > ui mousemode right "rotate selected models" |
| 25153 | | |
| 25154 | | > view matrix models |
| 25155 | | > #24,-0.96175,0.24118,-0.12989,569.68,0.068309,-0.24805,-0.96634,385.04,-0.26528,-0.93825,0.22208,431.17,#26,-0.86655,-0.28482,-0.40984,441.6,0.48276,-0.68666,-0.54354,104.36,-0.1266,-0.66886,0.73253,211.72,#27,0.16042,0.86849,-0.46903,422.56,0.97152,-0.2229,-0.080438,117.79,-0.1744,-0.44277,-0.87951,245.98,#28,-0.41017,-0.10451,-0.906,473.02,-0.50461,0.85351,0.12999,171.52,0.75969,0.51049,-0.40282,249.01,#29,0.66562,0.6911,-0.28165,354.57,-0.17469,0.5112,0.84152,139.9,0.72556,-0.51093,0.461,231.85,#30,0.28116,-0.074334,0.95678,400.17,0.94575,0.1906,-0.26311,123.38,-0.1628,0.97885,0.12389,267.69,#31,-0.21534,-0.82201,-0.52719,625.02,0.15245,0.50494,-0.84959,-108.49,0.96457,-0.26332,0.016578,466.37,#32,-0.24983,0.47883,0.84161,389.14,0.5522,0.78443,-0.28238,80.271,-0.7954,0.39419,-0.46039,164.47,#33,-0.36961,0.92223,0.1135,377.88,-0.76951,-0.37227,0.51891,130.06,0.52081,0.10446,0.84726,191.9,#34,-0.84058,0.19207,-0.50649,410.63,-0.071964,0.88714,0.45585,155.84,0.53689,0.41963,-0.73189,202.32,#35,0.84054,-0.023977,0.54121,379.04,-0.53285,0.14368,0.83392,130.74,-0.097758,-0.98933,0.108,191.42 |
| 25156 | | |
| 25157 | | > ui mousemode right "translate selected models" |
| 25158 | | |
| 25159 | | > view matrix models |
| 25160 | | > #24,-0.96175,0.24118,-0.12989,573.17,0.068309,-0.24805,-0.96634,385.07,-0.26528,-0.93825,0.22208,436.15,#26,-0.86655,-0.28482,-0.40984,445.09,0.48276,-0.68666,-0.54354,104.39,-0.1266,-0.66886,0.73253,216.7,#27,0.16042,0.86849,-0.46903,426.05,0.97152,-0.2229,-0.080438,117.82,-0.1744,-0.44277,-0.87951,250.96,#28,-0.41017,-0.10451,-0.906,476.51,-0.50461,0.85351,0.12999,171.54,0.75969,0.51049,-0.40282,253.99,#29,0.66562,0.6911,-0.28165,358.06,-0.17469,0.5112,0.84152,139.92,0.72556,-0.51093,0.461,236.83,#30,0.28116,-0.074334,0.95678,403.66,0.94575,0.1906,-0.26311,123.41,-0.1628,0.97885,0.12389,272.68,#31,-0.21534,-0.82201,-0.52719,628.51,0.15245,0.50494,-0.84959,-108.47,0.96457,-0.26332,0.016578,471.35,#32,-0.24983,0.47883,0.84161,392.63,0.5522,0.78443,-0.28238,80.296,-0.7954,0.39419,-0.46039,169.45,#33,-0.36961,0.92223,0.1135,381.36,-0.76951,-0.37227,0.51891,130.09,0.52081,0.10446,0.84726,196.89,#34,-0.84058,0.19207,-0.50649,414.11,-0.071964,0.88714,0.45585,155.86,0.53689,0.41963,-0.73189,207.3,#35,0.84054,-0.023977,0.54121,382.53,-0.53285,0.14368,0.83392,130.77,-0.097758,-0.98933,0.108,196.4 |
| 25161 | | |
| 25162 | | > fitmap #24 inMap #25 |
| 25163 | | |
| 25164 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014 |
| 25165 | | points |
| 25166 | | correlation = 0.7375, correlation about mean = 0.2515, overlap = 17.37 |
| 25167 | | steps = 152, shift = 8.12, angle = 18.7 degrees |
| 25168 | | |
| 25169 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 25170 | | (#25) coordinates: |
| 25171 | | Matrix rotation and translation |
| 25172 | | -0.53704927 -0.84347043 -0.01165063 402.33042921 |
| 25173 | | 0.84318173 -0.53717160 0.02216432 56.75380643 |
| 25174 | | -0.02495334 0.00207973 0.99968646 -108.78435477 |
| 25175 | | Axis -0.01190675 0.00788624 0.99989801 |
| 25176 | | Axis point 184.70237821 138.81569158 0.00000000 |
| 25177 | | Rotation angle (degrees) 122.49779840 |
| 25178 | | Shift along axis -113.11613255 |
| 25179 | | |
| 25180 | | |
| 25181 | | > fitmap #24 inMap #25 |
| 25182 | | |
| 25183 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014 |
| 25184 | | points |
| 25185 | | correlation = 0.7375, correlation about mean = 0.2515, overlap = 17.37 |
| 25186 | | steps = 152, shift = 8.12, angle = 18.7 degrees |
| 25187 | | |
| 25188 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 25189 | | (#25) coordinates: |
| 25190 | | Matrix rotation and translation |
| 25191 | | -0.53704927 -0.84347043 -0.01165063 402.33042921 |
| 25192 | | 0.84318173 -0.53717160 0.02216432 56.75380643 |
| 25193 | | -0.02495334 0.00207973 0.99968646 -108.78435477 |
| 25194 | | Axis -0.01190675 0.00788624 0.99989801 |
| 25195 | | Axis point 184.70237821 138.81569158 0.00000000 |
| 25196 | | Rotation angle (degrees) 122.49779840 |
| 25197 | | Shift along axis -113.11613255 |
| 25198 | | |
| 25199 | | |
| 25200 | | > fitmap #24 inMap #25 |
| 25201 | | |
| 25202 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014 |
| 25203 | | points |
| 25204 | | correlation = 0.7375, correlation about mean = 0.2515, overlap = 17.37 |
| 25205 | | steps = 152, shift = 8.12, angle = 18.7 degrees |
| 25206 | | |
| 25207 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 25208 | | (#25) coordinates: |
| 25209 | | Matrix rotation and translation |
| 25210 | | -0.53704927 -0.84347043 -0.01165063 402.33042921 |
| 25211 | | 0.84318173 -0.53717160 0.02216432 56.75380643 |
| 25212 | | -0.02495334 0.00207973 0.99968646 -108.78435477 |
| 25213 | | Axis -0.01190675 0.00788624 0.99989801 |
| 25214 | | Axis point 184.70237821 138.81569158 0.00000000 |
| 25215 | | Rotation angle (degrees) 122.49779840 |
| 25216 | | Shift along axis -113.11613255 |
| 25217 | | |
| 25218 | | |
| 25219 | | > ui mousemode right "rotate selected models" |
| 25220 | | |
| 25221 | | > view matrix models |
| 25222 | | > #24,-0.9551,0.15287,-0.2538,617.26,0.19462,-0.32217,-0.92646,364.85,-0.2234,-0.93426,0.27795,414.17,#26,-0.79469,-0.41492,-0.44308,439.02,0.59677,-0.66761,-0.44516,96.067,-0.1111,-0.61817,0.77815,215.84,#27,0.28727,0.80303,-0.52214,423.96,0.92931,-0.36574,-0.051206,113.63,-0.23208,-0.47052,-0.85132,250.21,#28,-0.43641,0.045328,-0.8986,481.63,-0.4054,0.8817,0.24136,159.58,0.80324,0.46963,-0.36641,248.08,#29,0.67195,0.72835,-0.13412,359.14,-0.23631,0.38249,0.89323,144.67,0.70189,-0.56851,0.42913,238.13,#30,0.40356,0.0060483,0.91493,403.78,0.88691,0.24309,-0.39281,123.37,-0.22479,0.96998,0.092739,272.62,#31,-0.13951,-0.75483,-0.64091,603.72,0.22512,0.60611,-0.76286,-129.42,0.96429,-0.25071,0.08537,472.42,#32,-0.21108,0.60586,0.76706,381.23,0.54624,0.72389,-0.42144,77.711,-0.8106,0.33004,-0.48374,172.41,#33,-0.44677,0.86423,0.2313,378.63,-0.68384,-0.49659,0.53457,129.79,0.57685,0.080651,0.81286,197.71,#34,-0.8123,0.33838,-0.47505,415.22,0.074464,0.868,0.49095,151,0.57847,0.36342,-0.73027,205.23,#35,0.74984,-0.056281,0.65922,379.85,-0.65259,0.10108,0.75094,130.27,-0.10889,-0.99329,0.039062,197.13 |
| 25223 | | |
| 25224 | | > fitmap #24 inMap #25 |
| 25225 | | |
| 25226 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014 |
| 25227 | | points |
| 25228 | | correlation = 0.7375, correlation about mean = 0.2516, overlap = 17.37 |
| 25229 | | steps = 132, shift = 7.97, angle = 15.7 degrees |
| 25230 | | |
| 25231 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 25232 | | (#25) coordinates: |
| 25233 | | Matrix rotation and translation |
| 25234 | | -0.53715115 -0.84340573 -0.01163786 402.33544824 |
| 25235 | | 0.84311660 -0.53727309 0.02218203 56.78127972 |
| 25236 | | -0.02496116 0.00210302 0.99968622 -108.78802057 |
| 25237 | | Axis -0.01190435 0.00789906 0.99989794 |
| 25238 | | Axis point 184.69932070 138.81584890 0.00000000 |
| 25239 | | Rotation angle (degrees) 122.50471451 |
| 25240 | | Shift along axis -113.11794171 |
| 25241 | | |
| 25242 | | |
| 25243 | | > fitmap #24 inMap #25 |
| 25244 | | |
| 25245 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014 |
| 25246 | | points |
| 25247 | | correlation = 0.7375, correlation about mean = 0.2516, overlap = 17.37 |
| 25248 | | steps = 132, shift = 7.97, angle = 15.7 degrees |
| 25249 | | |
| 25250 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 25251 | | (#25) coordinates: |
| 25252 | | Matrix rotation and translation |
| 25253 | | -0.53715115 -0.84340573 -0.01163786 402.33544824 |
| 25254 | | 0.84311660 -0.53727309 0.02218203 56.78127972 |
| 25255 | | -0.02496116 0.00210302 0.99968622 -108.78802057 |
| 25256 | | Axis -0.01190435 0.00789906 0.99989794 |
| 25257 | | Axis point 184.69932070 138.81584890 0.00000000 |
| 25258 | | Rotation angle (degrees) 122.50471451 |
| 25259 | | Shift along axis -113.11794171 |
| 25260 | | |
| 25261 | | |
| 25262 | | > fitmap #24 inMap #25 |
| 25263 | | |
| 25264 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014 |
| 25265 | | points |
| 25266 | | correlation = 0.7375, correlation about mean = 0.2516, overlap = 17.37 |
| 25267 | | steps = 132, shift = 7.97, angle = 15.7 degrees |
| 25268 | | |
| 25269 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 25270 | | (#25) coordinates: |
| 25271 | | Matrix rotation and translation |
| 25272 | | -0.53715115 -0.84340573 -0.01163786 402.33544824 |
| 25273 | | 0.84311660 -0.53727309 0.02218203 56.78127972 |
| 25274 | | -0.02496116 0.00210302 0.99968622 -108.78802057 |
| 25275 | | Axis -0.01190435 0.00789906 0.99989794 |
| 25276 | | Axis point 184.69932070 138.81584890 0.00000000 |
| 25277 | | Rotation angle (degrees) 122.50471451 |
| 25278 | | Shift along axis -113.11794171 |
| 25279 | | |
| 25280 | | |
| 25281 | | > view matrix models |
| 25282 | | > #24,-0.94277,0.073832,-0.32515,646.62,0.29536,-0.26761,-0.91714,330.54,-0.15473,-0.96069,0.23049,415.69,#26,-0.73973,-0.50696,-0.44248,433.98,0.67241,-0.58194,-0.4574,93.676,-0.025612,-0.63588,0.77136,210.69,#27,0.36105,0.73993,-0.56758,422.41,0.9137,-0.40243,0.056599,110.05,-0.18653,-0.53904,-0.82137,246.94,#28,-0.43083,0.15199,-0.88954,483.96,-0.42029,0.83849,0.34683,150.64,0.79859,0.52329,-0.29737,244.53,#29,0.68186,0.73097,-0.027412,360.26,-0.34514,0.35454,0.86901,147.59,0.64494,-0.58308,0.49403,240.69,#30,0.47306,0.078574,0.87752,404.42,0.86057,0.17218,-0.47935,119.95,-0.18875,0.98193,0.013833,271.07,#31,-0.068129,-0.70639,-0.70454,589.69,0.16786,0.68799,-0.70604,-163.37,0.98345,-0.16637,0.071704,441.95,#32,-0.20008,0.68732,0.69826,372.56,0.61914,0.64104,-0.45358,83.737,-0.75936,0.34156,-0.55381,169.54,#33,-0.47889,0.81674,0.32187,376.18,-0.6799,-0.57701,0.45254,133.91,0.55533,-0.0021241,0.83163,198.32,#34,-0.77098,0.43663,-0.46362,414.94,0.10626,0.80597,0.58234,151.15,0.62793,0.39971,-0.66778,205.1,#35,0.67863,-0.097371,0.728,377.41,-0.70823,0.1759,0.68372,134.32,-0.19463,-0.97958,0.050411,197.71 |
| 25283 | | |
| 25284 | | > view matrix models |
| 25285 | | > #24,-0.98044,0.073253,-0.18266,623.02,0.13546,-0.42211,-0.89637,390.95,-0.14276,-0.90358,0.40393,363.06,#26,-0.82796,-0.44396,-0.34262,438.21,0.55301,-0.7478,-0.36739,95.318,-0.093102,-0.49365,0.86466,215.45,#27,0.22038,0.76775,-0.60166,425.87,0.90559,-0.39021,-0.16623,116.2,-0.3624,-0.50822,-0.78127,249.04,#28,-0.33529,0.05209,-0.94067,480.9,-0.32482,0.93086,0.16732,163.51,0.88435,0.36165,-0.29519,235.82,#29,0.74864,0.64994,-0.13084,358.83,-0.13136,0.33885,0.93162,143.45,0.64983,-0.68027,0.33905,240.42,#30,0.33861,0.091849,0.93643,407.62,0.86824,0.35304,-0.34859,127.76,-0.36262,0.93109,0.039798,272.21,#31,-0.052589,-0.8027,-0.59405,637.71,0.32966,0.54757,-0.76908,-93.517,0.94264,-0.23628,0.23582,476.87,#32,-0.31541,0.60244,0.7332,377.25,0.44204,0.77697,-0.44825,70.16,-0.83971,0.18273,-0.51136,180.59,#33,-0.35559,0.88952,0.28689,374.85,-0.62762,-0.45471,0.63193,124.69,0.69256,0.044647,0.71997,200.09,#34,-0.75303,0.33339,-0.56727,411.01,0.11313,0.9149,0.38751,147.84,0.64819,0.22763,-0.72666,201.35,#35,0.76395,-0.15966,0.62521,375.98,-0.63522,-0.015717,0.77217,125.14,-0.11346,-0.98705,-0.11343,199.33 |
| 25286 | | |
| 25287 | | > view matrix models |
| 25288 | | > #24,-0.97204,0.010694,-0.23459,645.53,0.21319,-0.37869,-0.90064,366.75,-0.098468,-0.92546,0.36582,366.69,#26,-0.78741,-0.51484,-0.33899,434.36,0.61548,-0.68705,-0.38619,93.329,-0.034082,-0.51273,0.85787,211.8,#27,0.27429,0.71882,-0.6388,424.76,0.90494,-0.41768,-0.081431,113.27,-0.32535,-0.55574,-0.76505,246.82,#28,-0.32786,0.13331,-0.93527,482.66,-0.34533,0.90457,0.24999,157.1,0.87935,0.40494,-0.25053,233.87,#29,0.75873,0.64951,-0.049725,359.67,-0.21876,0.32596,0.91973,145.71,0.61358,-0.68695,0.3894,242.12,#30,0.38936,0.14968,0.90884,408.22,0.8592,0.29654,-0.41693,124.9,-0.33191,0.94322,-0.01315,271.22,#31,0.0043923,-0.76757,-0.64096,628.18,0.28308,0.6157,-0.73538,-122.78,0.95909,-0.17821,0.21998,455.78,#32,-0.31044,0.66428,0.67997,370.55,0.50679,0.72084,-0.47282,74.49,-0.80423,0.19782,-0.56042,178.08,#33,-0.37712,0.85439,0.35749,372.86,-0.63549,-0.5195,0.57121,127.96,0.67375,-0.011766,0.73887,200.33,#34,-0.71986,0.40789,-0.56163,410.66,0.13335,0.87532,0.46479,148.34,0.68119,0.25969,-0.68451,201.36,#35,0.71043,-0.19419,0.67644,374,-0.68199,0.047263,0.72983,128.36,-0.1737,-0.97982,-0.098863,199.56 |
| 25289 | | |
| 25290 | | > fitmap #24 inMap #25 |
| 25291 | | |
| 25292 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014 |
| 25293 | | points |
| 25294 | | correlation = 0.7375, correlation about mean = 0.2517, overlap = 17.37 |
| 25295 | | steps = 120, shift = 7.43, angle = 12.6 degrees |
| 25296 | | |
| 25297 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 25298 | | (#25) coordinates: |
| 25299 | | Matrix rotation and translation |
| 25300 | | -0.53707590 -0.84345346 -0.01165140 402.34012599 |
| 25301 | | 0.84316858 -0.53719856 0.02201090 56.80819392 |
| 25302 | | -0.02482429 0.00199743 0.99968984 -108.80732978 |
| 25303 | | Axis -0.01186481 0.00780943 0.99989911 |
| 25304 | | Axis point 184.69738864 138.83872102 0.00000000 |
| 25305 | | Rotation angle (degrees) 122.49950368 |
| 25306 | | Shift along axis -113.12640341 |
| 25307 | | |
| 25308 | | |
| 25309 | | > fitmap #24 inMap #25 |
| 25310 | | |
| 25311 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014 |
| 25312 | | points |
| 25313 | | correlation = 0.7375, correlation about mean = 0.2517, overlap = 17.37 |
| 25314 | | steps = 120, shift = 7.43, angle = 12.6 degrees |
| 25315 | | |
| 25316 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 25317 | | (#25) coordinates: |
| 25318 | | Matrix rotation and translation |
| 25319 | | -0.53707590 -0.84345346 -0.01165140 402.34012599 |
| 25320 | | 0.84316858 -0.53719856 0.02201090 56.80819392 |
| 25321 | | -0.02482429 0.00199743 0.99968984 -108.80732978 |
| 25322 | | Axis -0.01186481 0.00780943 0.99989911 |
| 25323 | | Axis point 184.69738864 138.83872102 0.00000000 |
| 25324 | | Rotation angle (degrees) 122.49950368 |
| 25325 | | Shift along axis -113.12640341 |
| 25326 | | |
| 25327 | | |
| 25328 | | > fitmap #24 inMap #25 |
| 25329 | | |
| 25330 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014 |
| 25331 | | points |
| 25332 | | correlation = 0.7375, correlation about mean = 0.2517, overlap = 17.37 |
| 25333 | | steps = 120, shift = 7.43, angle = 12.6 degrees |
| 25334 | | |
| 25335 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 25336 | | (#25) coordinates: |
| 25337 | | Matrix rotation and translation |
| 25338 | | -0.53707590 -0.84345346 -0.01165140 402.34012599 |
| 25339 | | 0.84316858 -0.53719856 0.02201090 56.80819392 |
| 25340 | | -0.02482429 0.00199743 0.99968984 -108.80732978 |
| 25341 | | Axis -0.01186481 0.00780943 0.99989911 |
| 25342 | | Axis point 184.69738864 138.83872102 0.00000000 |
| 25343 | | Rotation angle (degrees) 122.49950368 |
| 25344 | | Shift along axis -113.12640341 |
| 25345 | | |
| 25346 | | |
| 25347 | | > fitmap #24 inMap #25 |
| 25348 | | |
| 25349 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014 |
| 25350 | | points |
| 25351 | | correlation = 0.7375, correlation about mean = 0.2517, overlap = 17.37 |
| 25352 | | steps = 120, shift = 7.43, angle = 12.6 degrees |
| 25353 | | |
| 25354 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 25355 | | (#25) coordinates: |
| 25356 | | Matrix rotation and translation |
| 25357 | | -0.53707590 -0.84345346 -0.01165140 402.34012599 |
| 25358 | | 0.84316858 -0.53719856 0.02201090 56.80819392 |
| 25359 | | -0.02482429 0.00199743 0.99968984 -108.80732978 |
| 25360 | | Axis -0.01186481 0.00780943 0.99989911 |
| 25361 | | Axis point 184.69738864 138.83872102 0.00000000 |
| 25362 | | Rotation angle (degrees) 122.49950368 |
| 25363 | | Shift along axis -113.12640341 |
| 25364 | | |
| 25365 | | |
| 25366 | | > view matrix models |
| 25367 | | > #24,-0.91179,0.065394,-0.40541,659.65,0.37281,-0.28214,-0.88398,309.91,-0.17219,-0.95714,0.23287,418.1,#26,-0.67941,-0.54488,-0.49142,430.78,0.73249,-0.5429,-0.41075,89.985,-0.042981,-0.63904,0.76797,211.7,#27,0.44021,0.71114,-0.54818,420.09,0.87792,-0.46894,0.096668,107.62,-0.18832,-0.52381,-0.83076,247.63,#28,-0.47708,0.21477,-0.85221,484.9,-0.3745,0.82756,0.4182,142.82,0.79507,0.51867,-0.31438,245.86,#29,0.64017,0.76724,0.039069,361.46,-0.39555,0.28559,0.87291,150.25,0.65858,-0.57427,0.48631,240.08,#30,0.54733,0.078007,0.83327,402.64,0.81546,0.17432,-0.55194,119.25,-0.18832,0.98159,0.031801,271.39,#31,-0.068538,-0.64273,-0.76302,560.54,0.18249,0.74384,-0.64297,-177.11,0.98082,-0.18331,0.066312,447.54,#32,-0.13517,0.73406,0.66549,369.37,0.62656,0.58364,-0.51652,84.899,-0.76757,0.34715,-0.53882,169.66,#33,-0.54334,0.76466,0.34652,376.8,-0.63143,-0.64424,0.43156,134.86,0.55324,0.015687,0.83287,198.08,#34,-0.7686,0.49745,-0.40224,416.78,0.17735,0.76981,0.61314,148.81,0.61465,0.39992,-0.6799,205.34,#35,0.61884,-0.067176,0.78264,378.07,-0.76511,0.1741,0.61992,135.16,-0.1779,-0.98243,0.056343,197.48 |
| 25368 | | |
| 25369 | | > fitmap #24 inMap #25 |
| 25370 | | |
| 25371 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014 |
| 25372 | | points |
| 25373 | | correlation = 0.7375, correlation about mean = 0.2514, overlap = 17.37 |
| 25374 | | steps = 180, shift = 8.43, angle = 23.4 degrees |
| 25375 | | |
| 25376 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 25377 | | (#25) coordinates: |
| 25378 | | Matrix rotation and translation |
| 25379 | | -0.53705460 -0.84346654 -0.01168611 402.33850239 |
| 25380 | | 0.84317691 -0.53717775 0.02219872 56.72588531 |
| 25381 | | -0.02500139 0.00206846 0.99968528 -108.77679599 |
| 25382 | | Axis -0.01193388 0.00789374 0.99989763 |
| 25383 | | Axis point 184.71253914 138.80253508 0.00000000 |
| 25384 | | Rotation angle (degrees) 122.49822817 |
| 25385 | | Shift along axis -113.11933930 |
| 25386 | | |
| 25387 | | |
| 25388 | | > fitmap #24 inMap #25 |
| 25389 | | |
| 25390 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014 |
| 25391 | | points |
| 25392 | | correlation = 0.7375, correlation about mean = 0.2514, overlap = 17.37 |
| 25393 | | steps = 180, shift = 8.43, angle = 23.4 degrees |
| 25394 | | |
| 25395 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 25396 | | (#25) coordinates: |
| 25397 | | Matrix rotation and translation |
| 25398 | | -0.53705460 -0.84346654 -0.01168611 402.33850239 |
| 25399 | | 0.84317691 -0.53717775 0.02219872 56.72588531 |
| 25400 | | -0.02500139 0.00206846 0.99968528 -108.77679599 |
| 25401 | | Axis -0.01193388 0.00789374 0.99989763 |
| 25402 | | Axis point 184.71253914 138.80253508 0.00000000 |
| 25403 | | Rotation angle (degrees) 122.49822817 |
| 25404 | | Shift along axis -113.11933930 |
| 25405 | | |
| 25406 | | |
| 25407 | | > view matrix models |
| 25408 | | > #24,-0.99402,-0.016471,-0.10792,627.58,0.10379,-0.44888,-0.88754,401.09,-0.033823,-0.89344,0.44791,328.4,#26,-0.8499,-0.47362,-0.23099,436.49,0.52676,-0.77526,-0.34856,95.88,-0.013993,-0.41792,0.90838,211.46,#27,0.14979,0.717,-0.68079,427.39,0.89914,-0.38518,-0.20783,117.48,-0.41124,-0.58099,-0.70237,245.62,#28,-0.2228,0.063847,-0.97277,479.08,-0.30519,0.94313,0.1318,165.84,0.92586,0.32624,-0.19065,224.84,#29,0.8211,0.55795,-0.1204,358.99,-0.089699,0.33444,0.93814,142.59,0.5637,-0.7595,0.32466,243.92,#30,0.26834,0.18568,0.94526,411.53,0.86506,0.3853,-0.32126,129.29,-0.42387,0.90391,-0.057235,270.38,#31,0.044276,-0.84086,-0.53944,670.05,0.35834,0.51741,-0.7771,-78.867,0.93254,-0.1589,0.32422,453.76,#32,-0.42197,0.59491,0.68412,372.79,0.40587,0.79871,-0.44421,67.945,-0.81068,0.090225,-0.57849,184.52,#33,-0.2553,0.90251,0.34685,370.92,-0.61447,-0.42842,0.66248,122.99,0.74649,-0.043995,0.66394,202.58,#34,-0.67795,0.32853,-0.65761,406.26,0.11327,0.93058,0.34813,147.15,0.72633,0.16152,-0.6681,199.04,#35,0.76549,-0.2698,0.58414,371.94,-0.61733,-0.05195,0.78499,123.44,-0.18145,-0.96151,-0.20633,201.69 |
| 25409 | | |
| 25410 | | > fitmap #24 inMap #25 |
| 25411 | | |
| 25412 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014 |
| 25413 | | points |
| 25414 | | correlation = 0.7375, correlation about mean = 0.2515, overlap = 17.37 |
| 25415 | | steps = 108, shift = 6.93, angle = 8.53 degrees |
| 25416 | | |
| 25417 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 25418 | | (#25) coordinates: |
| 25419 | | Matrix rotation and translation |
| 25420 | | -0.53706199 -0.84346186 -0.01168449 402.33865259 |
| 25421 | | 0.84317250 -0.53718512 0.02218803 56.72804860 |
| 25422 | | -0.02499150 0.00206430 0.99968554 -108.77872519 |
| 25423 | | Axis -0.01193007 0.00788887 0.99989771 |
| 25424 | | Axis point 184.71252822 138.80238569 0.00000000 |
| 25425 | | Rotation angle (degrees) 122.49872094 |
| 25426 | | Shift along axis -113.12000798 |
| 25427 | | |
| 25428 | | |
| 25429 | | > fitmap #24 inMap #25 |
| 25430 | | |
| 25431 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014 |
| 25432 | | points |
| 25433 | | correlation = 0.7375, correlation about mean = 0.2515, overlap = 17.37 |
| 25434 | | steps = 108, shift = 6.93, angle = 8.53 degrees |
| 25435 | | |
| 25436 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 25437 | | (#25) coordinates: |
| 25438 | | Matrix rotation and translation |
| 25439 | | -0.53706199 -0.84346186 -0.01168449 402.33865259 |
| 25440 | | 0.84317250 -0.53718512 0.02218803 56.72804860 |
| 25441 | | -0.02499150 0.00206430 0.99968554 -108.77872519 |
| 25442 | | Axis -0.01193007 0.00788887 0.99989771 |
| 25443 | | Axis point 184.71252822 138.80238569 0.00000000 |
| 25444 | | Rotation angle (degrees) 122.49872094 |
| 25445 | | Shift along axis -113.12000798 |
| 25446 | | |
| 25447 | | |
| 25448 | | > fitmap #24 inMap #25 |
| 25449 | | |
| 25450 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014 |
| 25451 | | points |
| 25452 | | correlation = 0.7375, correlation about mean = 0.2515, overlap = 17.37 |
| 25453 | | steps = 108, shift = 6.93, angle = 8.53 degrees |
| 25454 | | |
| 25455 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 25456 | | (#25) coordinates: |
| 25457 | | Matrix rotation and translation |
| 25458 | | -0.53706199 -0.84346186 -0.01168449 402.33865259 |
| 25459 | | 0.84317250 -0.53718512 0.02218803 56.72804860 |
| 25460 | | -0.02499150 0.00206430 0.99968554 -108.77872519 |
| 25461 | | Axis -0.01193007 0.00788887 0.99989771 |
| 25462 | | Axis point 184.71252822 138.80238569 0.00000000 |
| 25463 | | Rotation angle (degrees) 122.49872094 |
| 25464 | | Shift along axis -113.12000798 |
| 25465 | | |
| 25466 | | |
| 25467 | | > view matrix models |
| 25468 | | > #24,-0.99922,0.0022816,-0.039311,609.63,0.032689,-0.50853,-0.86042,422.14,-0.021954,-0.86104,0.50806,305.97,#26,-0.88473,-0.42418,-0.1932,438.69,0.46493,-0.83254,-0.30118,97.289,-0.033096,-0.35629,0.93379,213.26,#27,0.080787,0.73386,-0.67448,428.58,0.87733,-0.37351,-0.30131,120.48,-0.47304,-0.5674,-0.67401,246.07,#28,-0.18782,0.0024265,-0.9822,476.48,-0.25626,0.96524,0.051388,170.76,0.94818,0.26135,-0.18067,221.14,#29,0.83325,0.52242,-0.18102,358.59,0.0054018,0.3197,0.9475,140.66,0.55287,-0.79049,0.26357,243.98,#30,0.20124,0.17109,0.96448,412.29,0.85071,0.45759,-0.25867,132.82,-0.4856,0.87255,-0.053463,270.28,#31,0.03233,-0.87711,-0.4792,687.29,0.42298,0.44641,-0.78855,-44.148,0.90556,-0.1772,0.38543,462.24,#32,-0.46072,0.53888,0.70523,376.72,0.31997,0.84199,-0.43436,63.278,-0.82786,0.025538,-0.56035,189.45,#33,-0.20117,0.92951,0.30909,371.26,-0.5785,-0.36737,0.72827,119.16,0.79048,-0.032302,0.61163,203.83,#34,-0.67386,0.26498,-0.68971,404.77,0.11542,0.95977,0.25597,145.4,0.72979,0.092883,-0.67733,198.02,#35,0.8041,-0.2791,0.52491,372.24,-0.57414,-0.13549,0.80747,119.62,-0.15424,-0.95066,-0.26918,202.89 |
| 25469 | | |
| 25470 | | > fitmap #24 inMap #25 |
| 25471 | | |
| 25472 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014 |
| 25473 | | points |
| 25474 | | correlation = 0.7375, correlation about mean = 0.2515, overlap = 17.37 |
| 25475 | | steps = 96, shift = 6.77, angle = 7.86 degrees |
| 25476 | | |
| 25477 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 25478 | | (#25) coordinates: |
| 25479 | | Matrix rotation and translation |
| 25480 | | -0.53711631 -0.84342763 -0.01165873 402.33694809 |
| 25481 | | 0.84313678 -0.53723864 0.02224909 56.75185351 |
| 25482 | | -0.02502902 0.00212044 0.99968448 -108.77613969 |
| 25483 | | Axis -0.01193348 0.00792671 0.99989737 |
| 25484 | | Axis point 184.70501377 138.80739150 0.00000000 |
| 25485 | | Rotation angle (degrees) 122.50242003 |
| 25486 | | Shift along axis -113.11640090 |
| 25487 | | |
| 25488 | | |
| 25489 | | > fitmap #24 inMap #25 |
| 25490 | | |
| 25491 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014 |
| 25492 | | points |
| 25493 | | correlation = 0.7375, correlation about mean = 0.2515, overlap = 17.37 |
| 25494 | | steps = 96, shift = 6.77, angle = 7.86 degrees |
| 25495 | | |
| 25496 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 25497 | | (#25) coordinates: |
| 25498 | | Matrix rotation and translation |
| 25499 | | -0.53711631 -0.84342763 -0.01165873 402.33694809 |
| 25500 | | 0.84313678 -0.53723864 0.02224909 56.75185351 |
| 25501 | | -0.02502902 0.00212044 0.99968448 -108.77613969 |
| 25502 | | Axis -0.01193348 0.00792671 0.99989737 |
| 25503 | | Axis point 184.70501377 138.80739150 0.00000000 |
| 25504 | | Rotation angle (degrees) 122.50242003 |
| 25505 | | Shift along axis -113.11640090 |
| 25506 | | |
| 25507 | | |
| 25508 | | > view matrix models |
| 25509 | | > #24,-0.99188,0.1263,-0.015154,577.45,-0.065958,-0.61252,-0.7877,447.89,-0.10877,-0.7803,0.61587,283.79,#26,-0.91338,-0.31744,-0.25488,443.82,0.3702,-0.90812,-0.19561,98.985,-0.16937,-0.27302,0.94698,222.54,#27,0.051569,0.81292,-0.58008,428.75,0.81285,-0.37162,-0.44852,125.14,-0.58018,-0.44839,-0.67995,250.91,#28,-0.25465,-0.10304,-0.96153,474.41,-0.1489,0.98663,-0.066295,176.13,0.9555,0.12629,-0.26659,223.4,#29,0.77379,0.56634,-0.28375,357.82,0.15601,0.26376,0.95189,138.1,0.61394,-0.78083,0.11574,240.31,#30,0.17447,0.048855,0.98345,409.26,0.79646,0.58027,-0.17012,138.87,-0.57897,0.81296,0.062328,271.78,#31,-0.089026,-0.89063,-0.44592,678.68,0.5371,0.33411,-0.77453,15.14,0.83881,-0.30846,0.44861,508.2,#32,-0.40541,0.46175,0.78894,387.44,0.16535,0.88585,-0.4335,56.434,-0.89906,-0.045292,-0.43548,198.55,#33,-0.22603,0.95584,0.18782,375.99,-0.48854,-0.27804,0.82706,112.92,0.84276,0.095181,0.52981,204.66,#34,-0.7472,0.17382,-0.64146,407.59,0.14348,0.98462,0.099678,141.28,0.64892,-0.017555,-0.76065,198.11,#35,0.86027,-0.17553,0.47868,377.02,-0.50979,-0.28268,0.81253,113.35,-0.0073119,-0.94302,-0.33267,203.75 |
| 25510 | | |
| 25511 | | > fitmap #24 inMap #25 |
| 25512 | | |
| 25513 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014 |
| 25514 | | points |
| 25515 | | correlation = 0.7375, correlation about mean = 0.2515, overlap = 17.37 |
| 25516 | | steps = 100, shift = 6.9, angle = 9.9 degrees |
| 25517 | | |
| 25518 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 25519 | | (#25) coordinates: |
| 25520 | | Matrix rotation and translation |
| 25521 | | -0.53709987 -0.84343794 -0.01167000 402.33815969 |
| 25522 | | 0.84314628 -0.53722242 0.02228108 56.73246859 |
| 25523 | | -0.02506209 0.00212765 0.99968364 -108.77255181 |
| 25524 | | Axis -0.01194803 0.00793955 0.99989710 |
| 25525 | | Axis point 184.70940740 138.80074964 0.00000000 |
| 25526 | | Rotation angle (degrees) 122.50133899 |
| 25527 | | Shift along axis -113.11807635 |
| 25528 | | |
| 25529 | | |
| 25530 | | > fitmap #24 inMap #25 |
| 25531 | | |
| 25532 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014 |
| 25533 | | points |
| 25534 | | correlation = 0.7375, correlation about mean = 0.2515, overlap = 17.37 |
| 25535 | | steps = 100, shift = 6.9, angle = 9.9 degrees |
| 25536 | | |
| 25537 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 25538 | | (#25) coordinates: |
| 25539 | | Matrix rotation and translation |
| 25540 | | -0.53709987 -0.84343794 -0.01167000 402.33815969 |
| 25541 | | 0.84314628 -0.53722242 0.02228108 56.73246859 |
| 25542 | | -0.02506209 0.00212765 0.99968364 -108.77255181 |
| 25543 | | Axis -0.01194803 0.00793955 0.99989710 |
| 25544 | | Axis point 184.70940740 138.80074964 0.00000000 |
| 25545 | | Rotation angle (degrees) 122.50133899 |
| 25546 | | Shift along axis -113.11807635 |
| 25547 | | |
| 25548 | | |
| 25549 | | > fitmap #24 inMap #25 |
| 25550 | | |
| 25551 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014 |
| 25552 | | points |
| 25553 | | correlation = 0.7375, correlation about mean = 0.2515, overlap = 17.37 |
| 25554 | | steps = 100, shift = 6.9, angle = 9.9 degrees |
| 25555 | | |
| 25556 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 25557 | | (#25) coordinates: |
| 25558 | | Matrix rotation and translation |
| 25559 | | -0.53709987 -0.84343794 -0.01167000 402.33815969 |
| 25560 | | 0.84314628 -0.53722242 0.02228108 56.73246859 |
| 25561 | | -0.02506209 0.00212765 0.99968364 -108.77255181 |
| 25562 | | Axis -0.01194803 0.00793955 0.99989710 |
| 25563 | | Axis point 184.70940740 138.80074964 0.00000000 |
| 25564 | | Rotation angle (degrees) 122.50133899 |
| 25565 | | Shift along axis -113.11807635 |
| 25566 | | |
| 25567 | | |
| 25568 | | > view matrix models |
| 25569 | | > #24,-0.99282,0.076835,-0.091661,604.7,0.03504,-0.54588,-0.83713,424.09,-0.11436,-0.83433,0.53927,312.97,#26,-0.87462,-0.39612,-0.27952,440.52,0.46599,-0.84597,-0.25921,96.058,-0.13379,-0.35696,0.92449,219.27,#27,0.1299,0.77965,-0.6126,427.64,0.85542,-0.40054,-0.32837,120.71,-0.50138,-0.48137,-0.71896,249.98,#28,-0.27514,-0.014265,-0.9613,477.97,-0.21372,0.97578,0.046689,169.67,0.93735,0.21829,-0.27152,227.37,#29,0.77954,0.59447,-0.19728,358.28,0.0269,0.28291,0.95877,141.01,0.62577,-0.75271,0.20455,240.65,#30,0.2508,0.094394,0.96343,409.31,0.82787,0.49492,-0.264,134.15,-0.50174,0.8638,0.045979,272.05,#31,-0.047045,-0.85406,-0.51804,664.41,0.46225,0.44113,-0.76924,-35.134,0.8855,-0.27565,0.37404,495.79,#32,-0.38117,0.54049,0.75005,380.72,0.28483,0.84049,-0.46092,61.241,-0.87954,0.037945,-0.47432,191.41,#33,-0.27646,0.92588,0.25753,374.39,-0.54253,-0.37155,0.7534,117.72,0.79324,0.068567,0.60503,202.79,#34,-0.73656,0.26247,-0.62336,408.49,0.14963,0.96203,0.22827,143.57,0.65961,0.074858,-0.74787,198.93,#35,0.81056,-0.19248,0.55312,375.46,-0.58305,-0.17619,0.7931,118.14,-0.0552,-0.96535,-0.25504,201.93 |
| 25570 | | |
| 25571 | | > fitmap #24 inMap #25 |
| 25572 | | |
| 25573 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014 |
| 25574 | | points |
| 25575 | | correlation = 0.7375, correlation about mean = 0.2515, overlap = 17.37 |
| 25576 | | steps = 64, shift = 6.9, angle = 3.2 degrees |
| 25577 | | |
| 25578 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 25579 | | (#25) coordinates: |
| 25580 | | Matrix rotation and translation |
| 25581 | | -0.53703159 -0.84348159 -0.01165744 402.33132509 |
| 25582 | | 0.84319357 -0.53715415 0.02213663 56.74756624 |
| 25583 | | -0.02493368 0.00205859 0.99968700 -108.78731108 |
| 25584 | | Axis -0.01190270 0.00787045 0.99989819 |
| 25585 | | Axis point 184.70483206 138.81482616 0.00000000 |
| 25586 | | Rotation angle (degrees) 122.49658715 |
| 25587 | | Shift along axis -113.11843685 |
| 25588 | | |
| 25589 | | |
| 25590 | | > fitmap #24 inMap #25 |
| 25591 | | |
| 25592 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014 |
| 25593 | | points |
| 25594 | | correlation = 0.7375, correlation about mean = 0.2515, overlap = 17.37 |
| 25595 | | steps = 64, shift = 6.9, angle = 3.2 degrees |
| 25596 | | |
| 25597 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 25598 | | (#25) coordinates: |
| 25599 | | Matrix rotation and translation |
| 25600 | | -0.53703159 -0.84348159 -0.01165744 402.33132509 |
| 25601 | | 0.84319357 -0.53715415 0.02213663 56.74756624 |
| 25602 | | -0.02493368 0.00205859 0.99968700 -108.78731108 |
| 25603 | | Axis -0.01190270 0.00787045 0.99989819 |
| 25604 | | Axis point 184.70483206 138.81482616 0.00000000 |
| 25605 | | Rotation angle (degrees) 122.49658715 |
| 25606 | | Shift along axis -113.11843685 |
| 25607 | | |
| 25608 | | |
| 25609 | | > view matrix models |
| 25610 | | > #24,-0.99028,0.060441,-0.1253,614.97,0.076335,-0.5169,-0.85264,412.97,-0.1163,-0.85391,0.50726,324.47,#26,-0.85603,-0.42562,-0.29336,439.15,0.50299,-0.81669,-0.28286,95.013,-0.11919,-0.38969,0.9132,218.01,#27,0.16401,0.76649,-0.62096,427.05,0.86806,-0.41116,-0.27824,118.96,-0.46858,-0.4934,-0.73279,249.58,#28,-0.28735,0.021005,-0.9576,479.27,-0.23807,0.96682,0.092647,166.83,0.92777,0.2546,-0.27281,228.98,#29,0.77702,0.60815,-0.16245,358.53,-0.025574,0.28836,0.95718,142.17,0.62895,-0.7396,0.23961,240.78,#30,0.2838,0.10863,0.95271,409.12,0.83604,0.45851,-0.30133,132.25,-0.46956,0.88202,0.039305,272.07,#31,-0.034025,-0.83574,-0.54807,656.68,0.43037,0.48268,-0.76276,-54.663,0.90201,-0.26182,0.34325,490.17,#32,-0.36613,0.5712,0.73463,378.23,0.33144,0.81772,-0.47062,63.517,-0.86954,0.071184,-0.48871,188.67,#33,-0.30021,0.91108,0.2825,373.95,-0.56101,-0.40817,0.72019,119.73,0.77145,0.057727,0.63366,202.13,#34,-0.73361,0.29772,-0.61088,409,0.15235,0.9481,0.2791,144.41,0.66227,0.11168,-0.7409,199.35,#35,0.78856,-0.19431,0.58345,375.04,-0.61046,-0.13278,0.78084,120.14,-0.074255,-0.97191,-0.22333,201.29 |
| 25611 | | |
| 25612 | | > fitmap #24 inMap #25 |
| 25613 | | |
| 25614 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014 |
| 25615 | | points |
| 25616 | | correlation = 0.7375, correlation about mean = 0.2514, overlap = 17.37 |
| 25617 | | steps = 52, shift = 6.95, angle = 2.48 degrees |
| 25618 | | |
| 25619 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 25620 | | (#25) coordinates: |
| 25621 | | Matrix rotation and translation |
| 25622 | | -0.53711118 -0.84343043 -0.01169252 402.34326612 |
| 25623 | | 0.84313715 -0.53723416 0.02234320 56.71029643 |
| 25624 | | -0.02512655 0.00214238 0.99968199 -108.76329695 |
| 25625 | | Axis -0.01197623 0.00796449 0.99989656 |
| 25626 | | Axis point 184.71605435 138.78965469 0.00000000 |
| 25627 | | Rotation angle (degrees) 122.50217823 |
| 25628 | | Shift along axis -113.11893456 |
| 25629 | | |
| 25630 | | |
| 25631 | | > fitmap #24 inMap #25 |
| 25632 | | |
| 25633 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014 |
| 25634 | | points |
| 25635 | | correlation = 0.7375, correlation about mean = 0.2514, overlap = 17.37 |
| 25636 | | steps = 52, shift = 6.95, angle = 2.48 degrees |
| 25637 | | |
| 25638 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 25639 | | (#25) coordinates: |
| 25640 | | Matrix rotation and translation |
| 25641 | | -0.53711118 -0.84343043 -0.01169252 402.34326612 |
| 25642 | | 0.84313715 -0.53723416 0.02234320 56.71029643 |
| 25643 | | -0.02512655 0.00214238 0.99968199 -108.76329695 |
| 25644 | | Axis -0.01197623 0.00796449 0.99989656 |
| 25645 | | Axis point 184.71605435 138.78965469 0.00000000 |
| 25646 | | Rotation angle (degrees) 122.50217823 |
| 25647 | | Shift along axis -113.11893456 |
| 25648 | | |
| 25649 | | |
| 25650 | | > view matrix models |
| 25651 | | > #24,-0.97307,0.12581,-0.19317,613.1,0.12312,-0.42483,-0.89686,394.2,-0.1949,-0.89649,0.3979,373.89,#26,-0.82833,-0.40846,-0.38344,439.82,0.54267,-0.75505,-0.36799,95.783,-0.1392,-0.5129,0.84709,218.11,#27,0.22854,0.79804,-0.55758,425.48,0.90671,-0.38302,-0.17657,116.65,-0.35448,-0.46521,-0.81113,250.9,#28,-0.37766,0.021979,-0.92568,480.58,-0.32525,0.93286,0.15485,164.56,0.86694,0.35956,-0.34516,240.38,#29,0.71479,0.68091,-0.1595,358.67,-0.11976,0.34388,0.93134,143.06,0.68901,-0.64661,0.32735,238.63,#30,0.34705,0.038416,0.93706,405.89,0.87078,0.35786,-0.33717,128.09,-0.34829,0.93299,0.090743,273.03,#31,-0.10615,-0.7955,-0.59659,627.45,0.33279,0.53696,-0.77519,-89.595,0.93701,-0.28082,0.20773,490.55,#32,-0.27582,0.58278,0.76439,381.09,0.43485,0.78486,-0.44148,69.757,-0.85722,0.21063,-0.4699,180.2,#33,-0.38425,0.89121,0.24104,377.02,-0.62905,-0.44383,0.63821,124.33,0.67576,0.093606,0.73116,199.29,#34,-0.78747,0.31013,-0.53264,412.79,0.1067,0.91973,0.37776,147.92,0.60705,0.24064,-0.75736,202.35,#35,0.77629,-0.10714,0.62121,378.19,-0.62647,-0.021597,0.77914,124.79,-0.07006,-0.99401,-0.083884,198.59 |
| 25652 | | |
| 25653 | | > fitmap #24 inMap #25 |
| 25654 | | |
| 25655 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014 |
| 25656 | | points |
| 25657 | | correlation = 0.7374, correlation about mean = 0.2514, overlap = 17.37 |
| 25658 | | steps = 92, shift = 7.44, angle = 7.78 degrees |
| 25659 | | |
| 25660 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 25661 | | (#25) coordinates: |
| 25662 | | Matrix rotation and translation |
| 25663 | | -0.53702676 -0.84348427 -0.01168654 402.33384056 |
| 25664 | | 0.84319403 -0.53714987 0.02222297 56.72606806 |
| 25665 | | -0.02502215 0.00208031 0.99968474 -108.76693197 |
| 25666 | | Axis -0.01194099 0.00790562 0.99989745 |
| 25667 | | Axis point 184.70886211 138.80604607 0.00000000 |
| 25668 | | Rotation angle (degrees) 122.49635404 |
| 25669 | | Shift along axis -113.11158615 |
| 25670 | | |
| 25671 | | |
| 25672 | | > fitmap #24 inMap #25 |
| 25673 | | |
| 25674 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014 |
| 25675 | | points |
| 25676 | | correlation = 0.7374, correlation about mean = 0.2514, overlap = 17.37 |
| 25677 | | steps = 92, shift = 7.44, angle = 7.78 degrees |
| 25678 | | |
| 25679 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 25680 | | (#25) coordinates: |
| 25681 | | Matrix rotation and translation |
| 25682 | | -0.53702676 -0.84348427 -0.01168654 402.33384056 |
| 25683 | | 0.84319403 -0.53714987 0.02222297 56.72606806 |
| 25684 | | -0.02502215 0.00208031 0.99968474 -108.76693197 |
| 25685 | | Axis -0.01194099 0.00790562 0.99989745 |
| 25686 | | Axis point 184.70886211 138.80604607 0.00000000 |
| 25687 | | Rotation angle (degrees) 122.49635404 |
| 25688 | | Shift along axis -113.11158615 |
| 25689 | | |
| 25690 | | |
| 25691 | | > fitmap #24 inMap #25 |
| 25692 | | |
| 25693 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014 |
| 25694 | | points |
| 25695 | | correlation = 0.7374, correlation about mean = 0.2514, overlap = 17.37 |
| 25696 | | steps = 92, shift = 7.44, angle = 7.78 degrees |
| 25697 | | |
| 25698 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 25699 | | (#25) coordinates: |
| 25700 | | Matrix rotation and translation |
| 25701 | | -0.53702676 -0.84348427 -0.01168654 402.33384056 |
| 25702 | | 0.84319403 -0.53714987 0.02222297 56.72606806 |
| 25703 | | -0.02502215 0.00208031 0.99968474 -108.76693197 |
| 25704 | | Axis -0.01194099 0.00790562 0.99989745 |
| 25705 | | Axis point 184.70886211 138.80604607 0.00000000 |
| 25706 | | Rotation angle (degrees) 122.49635404 |
| 25707 | | Shift along axis -113.11158615 |
| 25708 | | |
| 25709 | | |
| 25710 | | > fitmap #24 inMap #25 |
| 25711 | | |
| 25712 | | Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014 |
| 25713 | | points |
| 25714 | | correlation = 0.7374, correlation about mean = 0.2514, overlap = 17.37 |
| 25715 | | steps = 92, shift = 7.44, angle = 7.78 degrees |
| 25716 | | |
| 25717 | | Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map |
| 25718 | | (#25) coordinates: |
| 25719 | | Matrix rotation and translation |
| 25720 | | -0.53702676 -0.84348427 -0.01168654 402.33384056 |
| 25721 | | 0.84319403 -0.53714987 0.02222297 56.72606806 |
| 25722 | | -0.02502215 0.00208031 0.99968474 -108.76693197 |
| 25723 | | Axis -0.01194099 0.00790562 0.99989745 |
| 25724 | | Axis point 184.70886211 138.80604607 0.00000000 |
| 25725 | | Rotation angle (degrees) 122.49635404 |
| 25726 | | Shift along axis -113.11158615 |
| 25727 | | |
| 25728 | | |
| 25729 | | > select subtract #24 |
| 25730 | | |
| 25731 | | 40824 atoms, 41582 bonds, 1 pseudobond, 5145 residues, 11 models selected |
| 25732 | | |
| 25733 | | > select subtract #26 |
| 25734 | | |
| 25735 | | 31014 atoms, 31550 bonds, 1 pseudobond, 3912 residues, 10 models selected |
| 25736 | | |
| 25737 | | > select subtract #27 |
| 25738 | | |
| 25739 | | 23513 atoms, 23931 bonds, 1 pseudobond, 2959 residues, 9 models selected |
| 25740 | | |
| 25741 | | > select subtract #28 |
| 25742 | | |
| 25743 | | 22056 atoms, 22448 bonds, 1 pseudobond, 2778 residues, 8 models selected |
| 25744 | | |
| 25745 | | > select subtract #29 |
| 25746 | | |
| 25747 | | 20599 atoms, 20965 bonds, 1 pseudobond, 2597 residues, 7 models selected |
| 25748 | | |
| 25749 | | > select subtract #30 |
| 25750 | | |
| 25751 | | 13385 atoms, 13592 bonds, 1 pseudobond, 1692 residues, 6 models selected |
| 25752 | | |
| 25753 | | > select subtract #31 |
| 25754 | | |
| 25755 | | 11923 atoms, 12111 bonds, 1 pseudobond, 1513 residues, 5 models selected |
| 25756 | | |
| 25757 | | > select subtract #32 |
| 25758 | | |
| 25759 | | 5250 atoms, 5325 bonds, 660 residues, 3 models selected |
| 25760 | | |
| 25761 | | > select subtract #33 |
| 25762 | | |
| 25763 | | 3830 atoms, 3884 bonds, 483 residues, 2 models selected |
| 25764 | | |
| 25765 | | > select subtract #34 |
| 25766 | | |
| 25767 | | 1463 atoms, 1486 bonds, 185 residues, 1 model selected |
| 25768 | | |
| 25769 | | > select subtract #35 |
| 25770 | | |
| 25771 | | Nothing selected |
| 25772 | | |
| 25773 | | > fitmap #24 inMap #19 |
| 25774 | | |
| 25775 | | Fit map postprocess_20231221.mrc in map COPI_golph_linkage3_postprocess.mrc |
| 25776 | | using 18014 points |
| 25777 | | correlation = 0.8382, correlation about mean = 0.1145, overlap = 82.66 |
| 25778 | | steps = 48, shift = 1.49, angle = 2.19 degrees |
| 25779 | | |
| 25780 | | Position of postprocess_20231221.mrc (#24) relative to |
| 25781 | | COPI_golph_linkage3_postprocess.mrc (#19) coordinates: |
| 25782 | | Matrix rotation and translation |
| 25783 | | -0.97203359 0.23353650 0.02472742 476.65176931 |
| 25784 | | -0.21547145 -0.84502445 -0.48939328 502.69321473 |
| 25785 | | -0.09339591 -0.48103475 0.87171257 268.47354093 |
| 25786 | | Axis 0.01800007 0.25437826 -0.96693728 |
| 25787 | | Axis point 273.32590072 257.51648836 0.00000000 |
| 25788 | | Rotation angle (degrees) 166.57451956 |
| 25789 | | Shift along axis -123.14308766 |
| 25790 | | |
| 25791 | | |
| 25792 | | > fitmap #24 inMap #19 |
| 25793 | | |
| 25794 | | Fit map postprocess_20231221.mrc in map COPI_golph_linkage3_postprocess.mrc |
| 25795 | | using 18014 points |
| 25796 | | correlation = 0.8382, correlation about mean = 0.1144, overlap = 82.66 |
| 25797 | | steps = 28, shift = 0.02, angle = 0.00798 degrees |
| 25798 | | |
| 25799 | | Position of postprocess_20231221.mrc (#24) relative to |
| 25800 | | COPI_golph_linkage3_postprocess.mrc (#19) coordinates: |
| 25801 | | Matrix rotation and translation |
| 25802 | | -0.97202596 0.23357940 0.02462192 476.67328677 |
| 25803 | | -0.21546556 -0.84506605 -0.48932404 502.68220492 |
| 25804 | | -0.09348887 -0.48094083 0.87175443 268.44685604 |
| 25805 | | Axis 0.01805192 0.25433313 -0.96694818 |
| 25806 | | Axis point 273.34423552 257.49733342 0.00000000 |
| 25807 | | Rotation angle (degrees) 166.57354635 |
| 25808 | | Shift along axis -123.12059435 |
| 25809 | | |
| 25810 | | |
| 25811 | | > fitmap #25 inMap #19 |
| 25812 | | |
| 25813 | | Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage3_postprocess.mrc |
| 25814 | | using 65799 points |
| 25815 | | correlation = 0.9188, correlation about mean = 0.1408, overlap = 8478 |
| 25816 | | steps = 48, shift = 0.0726, angle = 0.0389 degrees |
| 25817 | | |
| 25818 | | Position of emd_3720_2017_leaf.map (#25) relative to |
| 25819 | | COPI_golph_linkage3_postprocess.mrc (#19) coordinates: |
| 25820 | | Matrix rotation and translation |
| 25821 | | 0.31545792 -0.94500968 0.08627300 402.21544873 |
| 25822 | | 0.84037390 0.23598354 -0.48793802 103.41959547 |
| 25823 | | 0.44074713 0.22642549 0.86860433 169.26232870 |
| 25824 | | Axis 0.36532989 -0.18128025 0.91305615 |
| 25825 | | Axis point 62.41634809 271.10376062 0.00000000 |
| 25826 | | Rotation angle (degrees) 77.87630625 |
| 25827 | | Shift along axis 282.73940752 |
| 25828 | | |
| 25829 | | |
| 25830 | | > show #26 models |
| 25831 | | |
| 25832 | | > hide #!25 models |
| 25833 | | |
| 25834 | | > show #27 models |
| 25835 | | |
| 25836 | | > show #28 models |
| 25837 | | |
| 25838 | | > show #29 models |
| 25839 | | |
| 25840 | | > show #30 models |
| 25841 | | |
| 25842 | | > show #31 models |
| 25843 | | |
| 25844 | | > show #!32 models |
| 25845 | | |
| 25846 | | > show #33 models |
| 25847 | | |
| 25848 | | > show #34 models |
| 25849 | | |
| 25850 | | > show #35 models |
| 25851 | | |
| 25852 | | > fitmap #26 inMap #24 |
| 25853 | | |
| 25854 | | Fit molecule copy of CopA_F8WHL2.pdb (#26) to map postprocess_20231221.mrc |
| 25855 | | (#24) using 9810 atoms |
| 25856 | | average map value = 0.002302, steps = 180 |
| 25857 | | shifted from previous position = 34.2 |
| 25858 | | rotated from previous position = 9.99 degrees |
| 25859 | | atoms outside contour = 8643, contour level = 0.0037635 |
| 25860 | | |
| 25861 | | Position of copy of CopA_F8WHL2.pdb (#26) relative to postprocess_20231221.mrc |
| 25862 | | (#24) coordinates: |
| 25863 | | Matrix rotation and translation |
| 25864 | | 0.86507267 0.48271071 0.13652705 179.72237680 |
| 25865 | | -0.27280766 0.68108410 -0.67948541 229.59514250 |
| 25866 | | -0.42098128 0.55055863 0.72087442 210.15298064 |
| 25867 | | Axis 0.79487947 0.36027322 -0.48823133 |
| 25868 | | Axis point 0.00000000 -284.74933541 406.34125041 |
| 25869 | | Rotation angle (degrees) 50.69002383 |
| 25870 | | Shift along axis 122.97133949 |
| 25871 | | |
| 25872 | | |
| 25873 | | > fitmap #27 inMap #24 |
| 25874 | | |
| 25875 | | Fit molecule copy of CopB_Q9JIF7.pdb (#27) to map postprocess_20231221.mrc |
| 25876 | | (#24) using 7501 atoms |
| 25877 | | average map value = 0.002923, steps = 140 |
| 25878 | | shifted from previous position = 6.91 |
| 25879 | | rotated from previous position = 7.67 degrees |
| 25880 | | atoms outside contour = 5721, contour level = 0.0037635 |
| 25881 | | |
| 25882 | | Position of copy of CopB_Q9JIF7.pdb (#27) relative to postprocess_20231221.mrc |
| 25883 | | (#24) coordinates: |
| 25884 | | Matrix rotation and translation |
| 25885 | | -0.04160222 -0.73260006 0.67938679 172.38172893 |
| 25886 | | -0.03782789 0.68064286 0.73163813 204.57811403 |
| 25887 | | -0.99841790 0.00473800 -0.05602897 236.25128780 |
| 25888 | | Axis -0.37161686 0.85775265 0.35519192 |
| 25889 | | Axis point 209.22857536 0.00000000 -39.79684346 |
| 25890 | | Rotation angle (degrees) 102.03412099 |
| 25891 | | Shift along axis 195.33201108 |
| 25892 | | |
| 25893 | | |
| 25894 | | > fitmap #28 inMap #24 |
| 25895 | | |
| 25896 | | Fit molecule copy of hArf1_P84078 (#28) to map postprocess_20231221.mrc (#24) |
| 25897 | | using 1457 atoms |
| 25898 | | average map value = 0.002597, steps = 112 |
| 25899 | | shifted from previous position = 12.3 |
| 25900 | | rotated from previous position = 22.5 degrees |
| 25901 | | atoms outside contour = 1394, contour level = 0.0037635 |
| 25902 | | |
| 25903 | | Position of copy of hArf1_P84078 (#28) relative to postprocess_20231221.mrc |
| 25904 | | (#24) coordinates: |
| 25905 | | Matrix rotation and translation |
| 25906 | | -0.01934794 -0.31091515 0.95024071 127.82557022 |
| 25907 | | -0.57176123 -0.77623084 -0.26562147 202.08556806 |
| 25908 | | 0.82019189 -0.54845003 -0.16275076 178.70102583 |
| 25909 | | Axis -0.69639109 0.32021108 -0.64226499 |
| 25910 | | Axis point 0.00000000 137.01484769 12.23739255 |
| 25911 | | Rotation angle (degrees) 168.28361402 |
| 25912 | | Shift along axis -139.07996225 |
| 25913 | | |
| 25914 | | |
| 25915 | | > fitmap #29 inMap #24 |
| 25916 | | |
| 25917 | | Fit molecule copy of hArf1_P84078 (#29) to map postprocess_20231221.mrc (#24) |
| 25918 | | using 1457 atoms |
| 25919 | | average map value = 0.003766, steps = 72 |
| 25920 | | shifted from previous position = 8.51 |
| 25921 | | rotated from previous position = 7.54 degrees |
| 25922 | | atoms outside contour = 800, contour level = 0.0037635 |
| 25923 | | |
| 25924 | | Position of copy of hArf1_P84078 (#29) relative to postprocess_20231221.mrc |
| 25925 | | (#24) coordinates: |
| 25926 | | Matrix rotation and translation |
| 25927 | | -0.84474773 -0.49401404 0.20579450 243.02037754 |
| 25928 | | -0.47618409 0.51835648 -0.71032053 195.90856907 |
| 25929 | | 0.24423341 -0.69803773 -0.67312209 220.58528669 |
| 25930 | | Axis 0.27841319 -0.87129151 0.40414996 |
| 25931 | | Axis point 151.37874481 0.00000000 157.29169422 |
| 25932 | | Rotation angle (degrees) 178.73603375 |
| 25933 | | Shift along axis -13.88386023 |
| 25934 | | |
| 25935 | | |
| 25936 | | > fitmap #30 inMap #24 |
| 25937 | | |
| 25938 | | Fit molecule copy of CopBprime_O55029.pdb (#30) to map |
| 25939 | | postprocess_20231221.mrc (#24) using 7214 atoms |
| 25940 | | average map value = 0.00312, steps = 76 |
| 25941 | | shifted from previous position = 4.92 |
| 25942 | | rotated from previous position = 7.62 degrees |
| 25943 | | atoms outside contour = 4513, contour level = 0.0037635 |
| 25944 | | |
| 25945 | | Position of copy of CopBprime_O55029.pdb (#30) relative to |
| 25946 | | postprocess_20231221.mrc (#24) coordinates: |
| 25947 | | Matrix rotation and translation |
| 25948 | | -0.16284683 -0.17501121 -0.97100565 188.50517873 |
| 25949 | | -0.01397505 -0.98363475 0.17963119 177.42546588 |
| 25950 | | -0.98655238 0.04282222 0.15773601 238.57597049 |
| 25951 | | Axis -0.64570587 0.07337687 0.76005247 |
| 25952 | | Axis point 189.58052565 85.42232155 0.00000000 |
| 25953 | | Rotation angle (degrees) 173.91881574 |
| 25954 | | Shift along axis 72.63028077 |
| 25955 | | |
| 25956 | | |
| 25957 | | > fitmap #31 inMap #24 |
| 25958 | | |
| 25959 | | Fit molecule copy of CopD_Q5XJY5 (#31) to map postprocess_20231221.mrc (#24) |
| 25960 | | using 1462 atoms |
| 25961 | | average map value = 0.003202, steps = 100 |
| 25962 | | shifted from previous position = 7.75 |
| 25963 | | rotated from previous position = 7.61 degrees |
| 25964 | | atoms outside contour = 960, contour level = 0.0037635 |
| 25965 | | |
| 25966 | | Position of copy of CopD_Q5XJY5 (#31) relative to postprocess_20231221.mrc |
| 25967 | | (#24) coordinates: |
| 25968 | | Matrix rotation and translation |
| 25969 | | -0.03867793 0.89478393 0.44482103 -96.24491555 |
| 25970 | | -0.99472967 -0.07677989 0.06795391 102.81750945 |
| 25971 | | 0.09495737 -0.43984836 0.89303781 477.62018193 |
| 25972 | | Axis -0.25548593 0.17602371 -0.95065377 |
| 25973 | | Axis point -29.87862257 190.33459261 0.00000000 |
| 25974 | | Rotation angle (degrees) 96.38507173 |
| 25975 | | Shift along axis -411.36388547 |
| 25976 | | |
| 25977 | | |
| 25978 | | > fitmap #44 inMap #24 |
| 25979 | | |
| 25980 | | Fit molecule copy of CopG_Q9QZE5 (#44) to map postprocess_20231221.mrc (#24) |
| 25981 | | using 6673 atoms |
| 25982 | | average map value = 0.002327, steps = 164 |
| 25983 | | shifted from previous position = 38.1 |
| 25984 | | rotated from previous position = 44.4 degrees |
| 25985 | | atoms outside contour = 6645, contour level = 0.0037635 |
| 25986 | | |
| 25987 | | Position of copy of CopG_Q9QZE5 (#44) relative to postprocess_20231221.mrc |
| 25988 | | (#24) coordinates: |
| 25989 | | Matrix rotation and translation |
| 25990 | | -0.61216261 0.43919834 -0.65754218 285.46162094 |
| 25991 | | 0.78865790 0.27893520 -0.54791771 122.96214473 |
| 25992 | | -0.05723289 -0.85399059 -0.51713095 227.88169761 |
| 25993 | | Axis -0.40322559 -0.79085760 0.46038394 |
| 25994 | | Axis point 76.81675526 0.00000000 179.91059694 |
| 25995 | | Rotation angle (degrees) 157.69539113 |
| 25996 | | Shift along axis -107.43790246 |
| 25997 | | |
| 25998 | | |
| 25999 | | > fitmap #32 inMap #24 |
| 26000 | | |
| 26001 | | Fit molecule copy of CopG_Q9QZE5 (#32) to map postprocess_20231221.mrc (#24) |
| 26002 | | using 6673 atoms |
| 26003 | | average map value = 0.002304, steps = 104 |
| 26004 | | shifted from previous position = 3.4 |
| 26005 | | rotated from previous position = 5.66 degrees |
| 26006 | | atoms outside contour = 5586, contour level = 0.0037635 |
| 26007 | | |
| 26008 | | Position of copy of CopG_Q9QZE5 (#32) relative to postprocess_20231221.mrc |
| 26009 | | (#24) coordinates: |
| 26010 | | Matrix rotation and translation |
| 26011 | | 0.44817827 -0.52631563 -0.72258431 218.97399207 |
| 26012 | | 0.39316596 -0.60988406 0.68808572 281.99701496 |
| 26013 | | -0.80284293 -0.59248062 -0.06640739 239.02861561 |
| 26014 | | Axis -0.81124288 0.05084409 0.58249453 |
| 26015 | | Axis point -0.00000000 224.12582577 112.77046133 |
| 26016 | | Rotation angle (degrees) 127.88340258 |
| 26017 | | Shift along axis -24.07034965 |
| 26018 | | |
| 26019 | | |
| 26020 | | > fitmap #32 inMap #24 |
| 26021 | | |
| 26022 | | Fit molecule copy of CopG_Q9QZE5 (#32) to map postprocess_20231221.mrc (#24) |
| 26023 | | using 6673 atoms |
| 26024 | | average map value = 0.002303, steps = 48 |
| 26025 | | shifted from previous position = 0.0255 |
| 26026 | | rotated from previous position = 0.0915 degrees |
| 26027 | | atoms outside contour = 5582, contour level = 0.0037635 |
| 26028 | | |
| 26029 | | Position of copy of CopG_Q9QZE5 (#32) relative to postprocess_20231221.mrc |
| 26030 | | (#24) coordinates: |
| 26031 | | Matrix rotation and translation |
| 26032 | | 0.44809247 -0.52626317 -0.72267572 218.97081694 |
| 26033 | | 0.39194556 -0.61089371 0.68788629 281.98590138 |
| 26034 | | -0.80348728 -0.59148621 -0.06747036 238.97648505 |
| 26035 | | Axis -0.81135093 0.05124898 0.58230852 |
| 26036 | | Axis point -0.00000000 224.01146973 112.86762893 |
| 26037 | | Rotation angle (degrees) 127.96178856 |
| 26038 | | Shift along axis -24.05264225 |
| 26039 | | |
| 26040 | | |
| 26041 | | > fitmap #32 inMap #24 |
| 26042 | | |
| 26043 | | Fit molecule copy of CopG_Q9QZE5 (#32) to map postprocess_20231221.mrc (#24) |
| 26044 | | using 6673 atoms |
| 26045 | | average map value = 0.002304, steps = 80 |
| 26046 | | shifted from previous position = 0.0367 |
| 26047 | | rotated from previous position = 0.0701 degrees |
| 26048 | | atoms outside contour = 5583, contour level = 0.0037635 |
| 26049 | | |
| 26050 | | Position of copy of CopG_Q9QZE5 (#32) relative to postprocess_20231221.mrc |
| 26051 | | (#24) coordinates: |
| 26052 | | Matrix rotation and translation |
| 26053 | | 0.44780713 -0.52609803 -0.72297277 218.96331223 |
| 26054 | | 0.39304791 -0.61043876 0.68766115 282.00765981 |
| 26055 | | -0.80310778 -0.59210250 -0.06657710 238.98972733 |
| 26056 | | Axis -0.81117269 0.05079323 0.58259670 |
| 26057 | | Axis point 0.00000000 224.05099040 112.83280987 |
| 26058 | | Rotation angle (degrees) 127.92317871 |
| 26059 | | Shift along axis -24.05835120 |
| 26060 | | |
| 26061 | | |
| 26062 | | > select add #32 |
| 26063 | | |
| 26064 | | 6673 atoms, 6786 bonds, 1 pseudobond, 853 residues, 2 models selected |
| 26065 | | |
| 26066 | | > view matrix models |
| 26067 | | > #32,-0.41942,0.54138,0.7287,377.77,0.2351,0.84011,-0.48883,67.254,-0.87682,-0.033707,-0.47964,184.63 |
| 26068 | | |
| 26069 | | > ui mousemode right "translate selected models" |
| 26070 | | |
| 26071 | | > view matrix models |
| 26072 | | > #32,-0.41942,0.54138,0.7287,372.72,0.2351,0.84011,-0.48883,69.446,-0.87682,-0.033707,-0.47964,189.37 |
| 26073 | | |
| 26074 | | > fitmap #32 inMap #24 |
| 26075 | | |
| 26076 | | Fit molecule copy of CopG_Q9QZE5 (#32) to map postprocess_20231221.mrc (#24) |
| 26077 | | using 6673 atoms |
| 26078 | | average map value = 0.002906, steps = 92 |
| 26079 | | shifted from previous position = 6.32 |
| 26080 | | rotated from previous position = 14.1 degrees |
| 26081 | | atoms outside contour = 5059, contour level = 0.0037635 |
| 26082 | | |
| 26083 | | Position of copy of CopG_Q9QZE5 (#32) relative to postprocess_20231221.mrc |
| 26084 | | (#24) coordinates: |
| 26085 | | Matrix rotation and translation |
| 26086 | | 0.47154726 -0.63850037 -0.60824374 228.85343617 |
| 26087 | | 0.47824571 -0.39433582 0.78471670 278.61322647 |
| 26088 | | -0.74089420 -0.66092097 0.11941209 254.29113821 |
| 26089 | | Axis -0.78929614 0.07242513 0.60972634 |
| 26090 | | Axis point 0.00000000 256.41512245 100.06668007 |
| 26091 | | Rotation angle (degrees) 113.68376066 |
| 26092 | | Shift along axis -5.40652946 |
| 26093 | | |
| 26094 | | |
| 26095 | | > select add #27 |
| 26096 | | |
| 26097 | | 14174 atoms, 14405 bonds, 1 pseudobond, 1806 residues, 3 models selected |
| 26098 | | |
| 26099 | | > view matrix models |
| 26100 | | > #27,0.20363,0.781,-0.5904,416.85,0.85589,-0.43481,-0.27999,112.99,-0.47538,-0.4483,-0.75699,248.91,#32,-0.29559,0.70066,0.64939,365.21,0.41175,0.70682,-0.5752,63.578,-0.86202,0.097362,-0.49743,186.55 |
| 26101 | | |
| 26102 | | > select subtract #32 |
| 26103 | | |
| 26104 | | 7501 atoms, 7619 bonds, 953 residues, 1 model selected |
| 26105 | | |
| 26106 | | > fitmap #32 inMap #24 |
| 26107 | | |
| 26108 | | Fit molecule copy of CopG_Q9QZE5 (#32) to map postprocess_20231221.mrc (#24) |
| 26109 | | using 6673 atoms |
| 26110 | | average map value = 0.002906, steps = 88 |
| 26111 | | shifted from previous position = 3.25 |
| 26112 | | rotated from previous position = 0.0132 degrees |
| 26113 | | atoms outside contour = 5051, contour level = 0.0037635 |
| 26114 | | |
| 26115 | | Position of copy of CopG_Q9QZE5 (#32) relative to postprocess_20231221.mrc |
| 26116 | | (#24) coordinates: |
| 26117 | | Matrix rotation and translation |
| 26118 | | 0.47154883 -0.63865736 -0.60807769 228.89663626 |
| 26119 | | 0.47818092 -0.39418923 0.78482983 278.60638802 |
| 26120 | | -0.74093502 -0.66085674 0.11951430 254.30830924 |
| 26121 | | Axis -0.78927551 0.07253373 0.60974013 |
| 26122 | | Axis point 0.00000000 256.45192148 100.07902507 |
| 26123 | | Rotation angle (degrees) 113.67592865 |
| 26124 | | Shift along axis -5.39216813 |
| 26125 | | |
| 26126 | | |
| 26127 | | > view matrix models |
| 26128 | | > #27,0.20363,0.781,-0.5904,418.54,0.85589,-0.43481,-0.27999,112.19,-0.47538,-0.4483,-0.75699,248.61 |
| 26129 | | |
| 26130 | | > ui mousemode right "rotate selected models" |
| 26131 | | |
| 26132 | | > view matrix models |
| 26133 | | > #27,0.2004,0.78409,-0.5874,418.53,0.85683,-0.43099,-0.28299,112.19,-0.47506,-0.44659,-0.7582,248.61 |
| 26134 | | |
| 26135 | | > view matrix models |
| 26136 | | > #27,0.13564,0.76181,-0.63344,419.17,0.84703,-0.42082,-0.32473,112.45,-0.51394,-0.4925,-0.70236,248.58 |
| 26137 | | |
| 26138 | | > fitmap #27 inMap #24 |
| 26139 | | |
| 26140 | | Fit molecule copy of CopB_Q9JIF7.pdb (#27) to map postprocess_20231221.mrc |
| 26141 | | (#24) using 7501 atoms |
| 26142 | | average map value = 0.002923, steps = 96 |
| 26143 | | shifted from previous position = 2.49 |
| 26144 | | rotated from previous position = 5.09 degrees |
| 26145 | | atoms outside contour = 5726, contour level = 0.0037635 |
| 26146 | | |
| 26147 | | Position of copy of CopB_Q9JIF7.pdb (#27) relative to postprocess_20231221.mrc |
| 26148 | | (#24) coordinates: |
| 26149 | | Matrix rotation and translation |
| 26150 | | -0.04206488 -0.73251848 0.67944626 172.36870294 |
| 26151 | | -0.03855814 0.68073178 0.73151727 204.56621725 |
| 26152 | | -0.99837058 0.00457300 -0.05687945 236.23830332 |
| 26153 | | Axis -0.37168909 0.85787350 0.35482430 |
| 26154 | | Axis point 209.20227656 0.00000000 -39.64656356 |
| 26155 | | Rotation angle (degrees) 102.06998275 |
| 26156 | | Shift along axis 195.24745974 |
| 26157 | | |
| 26158 | | |
| 26159 | | > select subtract #27 |
| 26160 | | |
| 26161 | | Nothing selected |
| 26162 | | |
| 26163 | | > fitmap #45 inMap #24 |
| 26164 | | |
| 26165 | | Fit molecule copy of CopZ1_P61924.pdb (#45) to map postprocess_20231221.mrc |
| 26166 | | (#24) using 1420 atoms |
| 26167 | | average map value = 0.002959, steps = 124 |
| 26168 | | shifted from previous position = 17.3 |
| 26169 | | rotated from previous position = 17.7 degrees |
| 26170 | | atoms outside contour = 1345, contour level = 0.0037635 |
| 26171 | | |
| 26172 | | Position of copy of CopZ1_P61924.pdb (#45) relative to |
| 26173 | | postprocess_20231221.mrc (#24) coordinates: |
| 26174 | | Matrix rotation and translation |
| 26175 | | -0.31392983 0.72637183 -0.61141803 307.16343514 |
| 26176 | | -0.34921927 -0.68716881 -0.63705958 155.19780204 |
| 26177 | | -0.88288954 0.01352695 0.46938583 206.76789307 |
| 26178 | | Axis 0.50589018 0.21109378 -0.83636986 |
| 26179 | | Axis point 249.20040984 38.50227007 0.00000000 |
| 26180 | | Rotation angle (degrees) 139.98324224 |
| 26181 | | Shift along axis 15.21782070 |
| 26182 | | |
| 26183 | | |
| 26184 | | > fitmap #46 inMap #24 |
| 26185 | | |
| 26186 | | Fit molecule copy of Golph3_ Q9CRA5.pdb (#46) to map postprocess_20231221.mrc |
| 26187 | | (#24) using 2367 atoms |
| 26188 | | average map value = 0.002774, steps = 124 |
| 26189 | | shifted from previous position = 31.5 |
| 26190 | | rotated from previous position = 41.2 degrees |
| 26191 | | atoms outside contour = 2316, contour level = 0.0037635 |
| 26192 | | |
| 26193 | | Position of copy of Golph3_ Q9CRA5.pdb (#46) relative to |
| 26194 | | postprocess_20231221.mrc (#24) coordinates: |
| 26195 | | Matrix rotation and translation |
| 26196 | | 0.36575003 0.51539000 -0.77498389 313.59398497 |
| 26197 | | 0.84259247 0.17030390 0.51091533 160.67810942 |
| 26198 | | 0.39530344 -0.83986290 -0.37197509 212.29582825 |
| 26199 | | Axis -0.74343976 -0.64410139 0.18008531 |
| 26200 | | Axis point 0.00000000 59.12484614 157.71167950 |
| 26201 | | Rotation angle (degrees) 114.70589747 |
| 26202 | | Shift along axis -298.39986990 |
| 26203 | | |
| 26204 | | |
| 26205 | | > fitmap #34 inMap #24 |
| 26206 | | |
| 26207 | | Fit molecule copy of Golph3_ Q9CRA5.pdb (#34) to map postprocess_20231221.mrc |
| 26208 | | (#24) using 2367 atoms |
| 26209 | | average map value = 0.002794, steps = 104 |
| 26210 | | shifted from previous position = 8.54 |
| 26211 | | rotated from previous position = 26.1 degrees |
| 26212 | | atoms outside contour = 2100, contour level = 0.0037635 |
| 26213 | | |
| 26214 | | Position of copy of Golph3_ Q9CRA5.pdb (#34) relative to |
| 26215 | | postprocess_20231221.mrc (#24) coordinates: |
| 26216 | | Matrix rotation and translation |
| 26217 | | 0.89576384 -0.28618485 0.34015492 192.67335380 |
| 26218 | | -0.44437077 -0.59697332 0.66795020 233.15319187 |
| 26219 | | 0.01190618 -0.74948054 -0.66191930 176.70751843 |
| 26220 | | Axis -0.96851040 0.22428772 -0.10808620 |
| 26221 | | Axis point 0.00000000 174.85960953 17.49295541 |
| 26222 | | Rotation angle (degrees) 132.96601105 |
| 26223 | | Shift along axis -153.41239267 |
| 26224 | | |
| 26225 | | |
| 26226 | | > fitmap #33 inMap #24 |
| 26227 | | |
| 26228 | | Fit molecule copy of CopZ1_P61924.pdb (#33) to map postprocess_20231221.mrc |
| 26229 | | (#24) using 1420 atoms |
| 26230 | | average map value = 0.002877, steps = 96 |
| 26231 | | shifted from previous position = 4.46 |
| 26232 | | rotated from previous position = 7.12 degrees |
| 26233 | | atoms outside contour = 1168, contour level = 0.0037635 |
| 26234 | | |
| 26235 | | Position of copy of CopZ1_P61924.pdb (#33) relative to |
| 26236 | | postprocess_20231221.mrc (#24) coordinates: |
| 26237 | | Matrix rotation and translation |
| 26238 | | 0.19308292 -0.94842799 -0.25140277 223.58566804 |
| 26239 | | -0.36413319 0.16866212 -0.91594766 236.56681043 |
| 26240 | | 0.91111251 0.26839794 -0.31278833 203.43218272 |
| 26241 | | Axis 0.67315004 -0.66074228 0.33209737 |
| 26242 | | Axis point -0.00000000 147.00955006 169.39527246 |
| 26243 | | Rotation angle (degrees) 118.39331975 |
| 26244 | | Shift along axis 61.75630170 |
| 26245 | | |
| 26246 | | |
| 26247 | | > fitmap #35 inMap #24 |
| 26248 | | |
| 26249 | | Fit molecule copy of CopZ2_Q9CTG7.pdb (#35) to map postprocess_20231221.mrc |
| 26250 | | (#24) using 1463 atoms |
| 26251 | | average map value = 0.00336, steps = 132 |
| 26252 | | shifted from previous position = 11.2 |
| 26253 | | rotated from previous position = 26.5 degrees |
| 26254 | | atoms outside contour = 958, contour level = 0.0037635 |
| 26255 | | |
| 26256 | | Position of copy of CopZ2_Q9CTG7.pdb (#35) relative to |
| 26257 | | postprocess_20231221.mrc (#24) coordinates: |
| 26258 | | Matrix rotation and translation |
| 26259 | | -0.97216939 0.18672263 -0.14149687 227.77682409 |
| 26260 | | 0.23376735 0.81303421 -0.53322437 243.08158768 |
| 26261 | | 0.01547674 -0.55146175 -0.83405662 215.39437003 |
| 26262 | | Axis -0.11060779 -0.95202821 0.28532122 |
| 26263 | | Axis point 93.88911333 0.00000000 148.59418013 |
| 26264 | | Rotation angle (degrees) 175.27107242 |
| 26265 | | Shift along axis -195.15783710 |
| 26266 | | |
| 26267 | | |
| 26268 | | > fitmap #26 inMap #24 |
| 26269 | | |
| 26270 | | Fit molecule copy of CopA_F8WHL2.pdb (#26) to map postprocess_20231221.mrc |
| 26271 | | (#24) using 9810 atoms |
| 26272 | | average map value = 0.002302, steps = 180 |
| 26273 | | shifted from previous position = 34.2 |
| 26274 | | rotated from previous position = 9.99 degrees |
| 26275 | | atoms outside contour = 8643, contour level = 0.0037635 |
| 26276 | | |
| 26277 | | Position of copy of CopA_F8WHL2.pdb (#26) relative to postprocess_20231221.mrc |
| 26278 | | (#24) coordinates: |
| 26279 | | Matrix rotation and translation |
| 26280 | | 0.86507267 0.48271071 0.13652705 179.72237680 |
| 26281 | | -0.27280766 0.68108410 -0.67948541 229.59514250 |
| 26282 | | -0.42098128 0.55055863 0.72087442 210.15298064 |
| 26283 | | Axis 0.79487947 0.36027322 -0.48823133 |
| 26284 | | Axis point -0.00000000 -284.74933541 406.34125041 |
| 26285 | | Rotation angle (degrees) 50.69002383 |
| 26286 | | Shift along axis 122.97133949 |
| 26287 | | |
| 26288 | | |
| 26289 | | > hide #!2 models |
| 26290 | | |
| 26291 | | > show #!1 models |
| 26292 | | |
| 26293 | | > show #3 models |
| 26294 | | |
| 26295 | | > select add #3 |
| 26296 | | |
| 26297 | | 9810 atoms, 10032 bonds, 1233 residues, 1 model selected |
| 26298 | | |
| 26299 | | > select subtract #3 |
| 26300 | | |
| 26301 | | Nothing selected |
| 26302 | | |
| 26303 | | > select add #26 |
| 26304 | | |
| 26305 | | 9810 atoms, 10032 bonds, 1233 residues, 1 model selected |
| 26306 | | |
| 26307 | | > view matrix models |
| 26308 | | > #26,-0.92759,-0.099393,-0.36013,435.15,0.2534,-0.87571,-0.41101,89.291,-0.27452,-0.4725,0.83748,214.4 |
| 26309 | | |
| 26310 | | > ui mousemode right "translate selected models" |
| 26311 | | |
| 26312 | | > view matrix models |
| 26313 | | > #26,-0.92759,-0.099393,-0.36013,432.49,0.2534,-0.87571,-0.41101,84.793,-0.27452,-0.4725,0.83748,214.71 |
| 26314 | | |
| 26315 | | > fitmap #26 inMap #24 |
| 26316 | | |
| 26317 | | Fit molecule copy of CopA_F8WHL2.pdb (#26) to map postprocess_20231221.mrc |
| 26318 | | (#24) using 9810 atoms |
| 26319 | | average map value = 0.001845, steps = 156 |
| 26320 | | shifted from previous position = 5.27 |
| 26321 | | rotated from previous position = 19.5 degrees |
| 26322 | | atoms outside contour = 8454, contour level = 0.0037635 |
| 26323 | | |
| 26324 | | Position of copy of CopA_F8WHL2.pdb (#26) relative to postprocess_20231221.mrc |
| 26325 | | (#24) coordinates: |
| 26326 | | Matrix rotation and translation |
| 26327 | | 0.90002629 0.40434962 0.16264703 162.22591413 |
| 26328 | | -0.20990448 0.72920305 -0.65130868 244.63191611 |
| 26329 | | -0.38195913 0.55205460 0.74117672 239.12991736 |
| 26330 | | Axis 0.82608622 0.37386187 -0.42167387 |
| 26331 | | Axis point 0.00000000 -322.87328569 438.29947047 |
| 26332 | | Rotation angle (degrees) 46.74842327 |
| 26333 | | Shift along axis 124.63630121 |
| 26334 | | |
| 26335 | | |
| 26336 | | > select subtract #26 |
| 26337 | | |
| 26338 | | Nothing selected |
| 26339 | | |
| 26340 | | > show #7 models |
| 26341 | | |
| 26342 | | > hide #7 models |
| 26343 | | |
| 26344 | | > hide #3 models |
| 26345 | | |
| 26346 | | > hide #34 models |
| 26347 | | |
| 26348 | | > show #34 models |
| 26349 | | |
| 26350 | | > select add #34 |
| 26351 | | |
| 26352 | | 2367 atoms, 2398 bonds, 298 residues, 1 model selected |
| 26353 | | |
| 26354 | | > view matrix models |
| 26355 | | > #34,-0.92224,0.3509,-0.16231,406.9,0.30997,0.922,0.23202,135.33,0.23107,0.16366,-0.95907,195.55 |
| 26356 | | |
| 26357 | | > fitmap #34 inMap #24 |
| 26358 | | |
| 26359 | | Fit molecule copy of Golph3_ Q9CRA5.pdb (#34) to map postprocess_20231221.mrc |
| 26360 | | (#24) using 2367 atoms |
| 26361 | | average map value = 0.0031, steps = 88 |
| 26362 | | shifted from previous position = 4.7 |
| 26363 | | rotated from previous position = 25.9 degrees |
| 26364 | | atoms outside contour = 1757, contour level = 0.0037635 |
| 26365 | | |
| 26366 | | Position of copy of Golph3_ Q9CRA5.pdb (#34) relative to |
| 26367 | | postprocess_20231221.mrc (#24) coordinates: |
| 26368 | | Matrix rotation and translation |
| 26369 | | 0.66107851 -0.23538394 0.71243919 198.01764748 |
| 26370 | | -0.68861771 -0.56740177 0.45150955 233.20995810 |
| 26371 | | 0.29796116 -0.78908151 -0.53718667 191.32717908 |
| 26372 | | Axis -0.89618830 0.29941402 -0.32741071 |
| 26373 | | Axis point 0.00000000 180.09123814 -4.24809178 |
| 26374 | | Rotation angle (degrees) 136.19956454 |
| 26375 | | Shift along axis -170.27733453 |
| 26376 | | |
| 26377 | | |
| 26378 | | > view matrix models |
| 26379 | | > #34,-0.76193,0.31034,-0.56847,404.93,0.17789,0.94425,0.27705,137.7,0.62275,0.10996,-0.77465,200.4 |
| 26380 | | |
| 26381 | | > fitmap #34 inMap #24 |
| 26382 | | |
| 26383 | | Fit molecule copy of Golph3_ Q9CRA5.pdb (#34) to map postprocess_20231221.mrc |
| 26384 | | (#24) using 2367 atoms |
| 26385 | | average map value = 0.0031, steps = 52 |
| 26386 | | shifted from previous position = 1.73 |
| 26387 | | rotated from previous position = 0.0207 degrees |
| 26388 | | atoms outside contour = 1754, contour level = 0.0037635 |
| 26389 | | |
| 26390 | | Position of copy of Golph3_ Q9CRA5.pdb (#34) relative to |
| 26391 | | postprocess_20231221.mrc (#24) coordinates: |
| 26392 | | Matrix rotation and translation |
| 26393 | | 0.66094921 -0.23568640 0.71245916 198.02627283 |
| 26394 | | -0.68875214 -0.56745433 0.45123837 233.21711085 |
| 26395 | | 0.29793729 -0.78895342 -0.53738801 191.32745999 |
| 26396 | | Axis -0.89615863 0.29953218 -0.32738385 |
| 26397 | | Axis point 0.00000000 180.10275225 -4.22827857 |
| 26398 | | Rotation angle (degrees) 136.21542708 |
| 26399 | | Shift along axis -170.24444387 |
| 26400 | | |
| 26401 | | |
| 26402 | | > fitmap #34 inMap #24 |
| 26403 | | |
| 26404 | | Fit molecule copy of Golph3_ Q9CRA5.pdb (#34) to map postprocess_20231221.mrc |
| 26405 | | (#24) using 2367 atoms |
| 26406 | | average map value = 0.0031, steps = 48 |
| 26407 | | shifted from previous position = 0.0567 |
| 26408 | | rotated from previous position = 0.0732 degrees |
| 26409 | | atoms outside contour = 1752, contour level = 0.0037635 |
| 26410 | | |
| 26411 | | Position of copy of Golph3_ Q9CRA5.pdb (#34) relative to |
| 26412 | | postprocess_20231221.mrc (#24) coordinates: |
| 26413 | | Matrix rotation and translation |
| 26414 | | 0.66030485 -0.23676096 0.71270032 198.05890200 |
| 26415 | | -0.68954027 -0.56712613 0.45044662 233.25118019 |
| 26416 | | 0.29754280 -0.78886767 -0.53773235 191.34786805 |
| 26417 | | Axis -0.89597093 0.30014103 -0.32733997 |
| 26418 | | Axis point 0.00000000 180.20298211 -4.21611868 |
| 26419 | | Rotation angle (degrees) 136.24278023 |
| 26420 | | Shift along axis -170.08257377 |
| 26421 | | |
| 26422 | | |
| 26423 | | > hide #33 models |
| 26424 | | |
| 26425 | | > show #33 models |
| 26426 | | |
| 26427 | | > hide #33 models |
| 26428 | | |
| 26429 | | > fitmap #33 inMap #24 |
| 26430 | | |
| 26431 | | Fit molecule copy of CopZ1_P61924.pdb (#33) to map postprocess_20231221.mrc |
| 26432 | | (#24) using 1420 atoms |
| 26433 | | average map value = 0.002876, steps = 64 |
| 26434 | | shifted from previous position = 0.0956 |
| 26435 | | rotated from previous position = 0.924 degrees |
| 26436 | | atoms outside contour = 1155, contour level = 0.0037635 |
| 26437 | | |
| 26438 | | Position of copy of CopZ1_P61924.pdb (#33) relative to |
| 26439 | | postprocess_20231221.mrc (#24) coordinates: |
| 26440 | | Matrix rotation and translation |
| 26441 | | 0.20518131 -0.94864591 -0.24077288 223.66436577 |
| 26442 | | -0.36049158 0.15546011 -0.91971625 236.63008510 |
| 26443 | | 0.90991563 0.27550518 -0.31008135 203.48243798 |
| 26444 | | Axis 0.67899746 -0.65369860 0.33412662 |
| 26445 | | Axis point 0.00000000 146.12330338 169.42808387 |
| 26446 | | Rotation angle (degrees) 118.34111838 |
| 26447 | | Shift along axis 65.17168050 |
| 26448 | | |
| 26449 | | |
| 26450 | | > fitmap #33 inMap #24 |
| 26451 | | |
| 26452 | | Fit molecule copy of CopZ1_P61924.pdb (#33) to map postprocess_20231221.mrc |
| 26453 | | (#24) using 1420 atoms |
| 26454 | | average map value = 0.002876, steps = 44 |
| 26455 | | shifted from previous position = 0.0477 |
| 26456 | | rotated from previous position = 0.598 degrees |
| 26457 | | atoms outside contour = 1155, contour level = 0.0037635 |
| 26458 | | |
| 26459 | | Position of copy of CopZ1_P61924.pdb (#33) relative to |
| 26460 | | postprocess_20231221.mrc (#24) coordinates: |
| 26461 | | Matrix rotation and translation |
| 26462 | | 0.21320758 -0.94850364 -0.23427202 223.69238124 |
| 26463 | | -0.35729733 0.14747903 -0.92227358 236.63459720 |
| 26464 | | 0.90933006 0.28034049 -0.30745417 203.53949161 |
| 26465 | | Axis 0.68263920 -0.64914225 0.33558613 |
| 26466 | | Axis point 0.00000000 145.45071387 169.56450289 |
| 26467 | | Rotation angle (degrees) 118.25417022 |
| 26468 | | Shift along axis 67.39670363 |
| 26469 | | |
| 26470 | | |
| 26471 | | > show #33 models |
| 26472 | | |
| 26473 | | > hide #33 models |
| 26474 | | |
| 26475 | | > show #33 models |
| 26476 | | |
| 26477 | | > hide #33 models |
| 26478 | | |
| 26479 | | > hide #35 models |
| 26480 | | |
| 26481 | | > show #35 models |
| 26482 | | |
| 26483 | | > fitmap #47 inMap #24 |
| 26484 | | |
| 26485 | | Fit molecule copy of CopZ2_Q9CTG7.pdb (#47) to map postprocess_20231221.mrc |
| 26486 | | (#24) using 1463 atoms |
| 26487 | | average map value = 0.002919, steps = 144 |
| 26488 | | shifted from previous position = 18.9 |
| 26489 | | rotated from previous position = 12.6 degrees |
| 26490 | | atoms outside contour = 1339, contour level = 0.0037635 |
| 26491 | | |
| 26492 | | Position of copy of CopZ2_Q9CTG7.pdb (#47) relative to |
| 26493 | | postprocess_20231221.mrc (#24) coordinates: |
| 26494 | | Matrix rotation and translation |
| 26495 | | 0.98590061 0.16552841 0.02450138 307.81924023 |
| 26496 | | -0.16531855 0.94089384 0.29561554 159.17828977 |
| 26497 | | 0.02587958 -0.29549808 0.95499273 207.30718464 |
| 26498 | | Axis -0.87261537 -0.00203453 -0.48840380 |
| 26499 | | Axis point 0.00000000 166.27214456 -502.67125256 |
| 26500 | | Rotation angle (degrees) 19.79782964 |
| 26501 | | Shift along axis -370.18127105 |
| 26502 | | |
| 26503 | | |
| 26504 | | > show #33 models |
| 26505 | | |
| 26506 | | > select add #33 |
| 26507 | | |
| 26508 | | 3787 atoms, 3839 bonds, 475 residues, 2 models selected |
| 26509 | | |
| 26510 | | > select subtract #34 |
| 26511 | | |
| 26512 | | 1420 atoms, 1441 bonds, 177 residues, 1 model selected |
| 26513 | | |
| 26514 | | > view matrix models |
| 26515 | | > #33,-0.39359,0.89806,0.19642,372.14,-0.55439,-0.40232,0.72855,119.05,0.73331,0.17786,0.65622,194 |
| 26516 | | |
| 26517 | | > fitmap #33 inMap #24 |
| 26518 | | |
| 26519 | | Fit molecule copy of CopZ1_P61924.pdb (#33) to map postprocess_20231221.mrc |
| 26520 | | (#24) using 1420 atoms |
| 26521 | | average map value = 0.003163, steps = 92 |
| 26522 | | shifted from previous position = 8.33 |
| 26523 | | rotated from previous position = 16.8 degrees |
| 26524 | | atoms outside contour = 1006, contour level = 0.0037635 |
| 26525 | | |
| 26526 | | Position of copy of CopZ1_P61924.pdb (#33) relative to |
| 26527 | | postprocess_20231221.mrc (#24) coordinates: |
| 26528 | | Matrix rotation and translation |
| 26529 | | 0.16627480 -0.98606611 -0.00513179 236.52760618 |
| 26530 | | -0.15296672 -0.02065199 -0.98801553 241.60078095 |
| 26531 | | 0.97414264 0.16506708 -0.15426920 209.38805539 |
| 26532 | | Axis 0.66766798 -0.56702805 0.48238849 |
| 26533 | | Axis point 0.00000000 156.51281645 152.82714666 |
| 26534 | | Rotation angle (degrees) 120.28643466 |
| 26535 | | Shift along axis 121.93387863 |
| 26536 | | |
| 26537 | | |
| 26538 | | > hide #34 models |
| 26539 | | |
| 26540 | | > select subtract #33 |
| 26541 | | |
| 26542 | | Nothing selected |
| 26543 | | |
| 26544 | | > hide #!32 models |
| 26545 | | |
| 26546 | | > hide #31 models |
| 26547 | | |
| 26548 | | > hide #30 models |
| 26549 | | |
| 26550 | | > hide #29 models |
| 26551 | | |
| 26552 | | > hide #28 models |
| 26553 | | |
| 26554 | | > hide #27 models |
| 26555 | | |
| 26556 | | > hide #26 models |
| 26557 | | |
| 26558 | | > hide #!24 models |
| 26559 | | |
| 26560 | | > hide #33 models |
| 26561 | | |
| 26562 | | > show #33 models |
| 26563 | | |
| 26564 | | > hide #33 models |
| 26565 | | |
| 26566 | | > show #33 models |
| 26567 | | |
| 26568 | | > show #!24 models |
| 26569 | | |
| 26570 | | > hide #35 models |
| 26571 | | |
| 26572 | | > hide #33 models |
| 26573 | | |
| 26574 | | > show #35 models |
| 26575 | | |
| 26576 | | > select add #35 |
| 26577 | | |
| 26578 | | 1463 atoms, 1486 bonds, 185 residues, 1 model selected |
| 26579 | | |
| 26580 | | > view matrix models |
| 26581 | | > #35,0.97333,-0.01674,0.2288,371.38,-0.22779,0.047549,0.97255,117.35,-0.027159,-0.99873,0.042467,198.86 |
| 26582 | | |
| 26583 | | > ui mousemode right "rotate selected models" |
| 26584 | | |
| 26585 | | > view matrix models |
| 26586 | | > #35,0.93449,0.019851,0.35544,371.99,-0.35592,0.031667,0.93398,117.66,0.0072849,-0.9993,0.036658,198.72 |
| 26587 | | |
| 26588 | | > view matrix models |
| 26589 | | > #35,0.86128,-0.068194,0.50354,374.52,-0.50035,0.058928,0.86381,117.2,-0.088579,-0.99593,0.016632,198.82 |
| 26590 | | |
| 26591 | | > ui mousemode right "translate selected models" |
| 26592 | | |
| 26593 | | > view matrix models |
| 26594 | | > #35,0.86128,-0.068194,0.50354,370.11,-0.50035,0.058928,0.86381,117.04,-0.088579,-0.99593,0.016632,198.08 |
| 26595 | | |
| 26596 | | > fitmap #47 inMap #24 |
| 26597 | | |
| 26598 | | Fit molecule copy of CopZ2_Q9CTG7.pdb (#47) to map postprocess_20231221.mrc |
| 26599 | | (#24) using 1463 atoms |
| 26600 | | average map value = 0.002919, steps = 56 |
| 26601 | | shifted from previous position = 0.0384 |
| 26602 | | rotated from previous position = 0.065 degrees |
| 26603 | | atoms outside contour = 1343, contour level = 0.0037635 |
| 26604 | | |
| 26605 | | Position of copy of CopZ2_Q9CTG7.pdb (#47) relative to |
| 26606 | | postprocess_20231221.mrc (#24) coordinates: |
| 26607 | | Matrix rotation and translation |
| 26608 | | 0.98576158 0.16643347 0.02395818 307.78824771 |
| 26609 | | -0.16603286 0.94089140 0.29522269 159.19368056 |
| 26610 | | 0.02659290 -0.29499703 0.95512803 207.32720157 |
| 26611 | | Axis -0.87127375 -0.00388933 -0.49078195 |
| 26612 | | Axis point 0.00000000 162.67625162 -501.78041708 |
| 26613 | | Rotation angle (degrees) 19.79835088 |
| 26614 | | Shift along axis -370.53942680 |
| 26615 | | |
| 26616 | | |
| 26617 | | > fitmap #47 inMap #24 |
| 26618 | | |
| 26619 | | Fit molecule copy of CopZ2_Q9CTG7.pdb (#47) to map postprocess_20231221.mrc |
| 26620 | | (#24) using 1463 atoms |
| 26621 | | average map value = 0.002919, steps = 64 |
| 26622 | | shifted from previous position = 0.0488 |
| 26623 | | rotated from previous position = 0.102 degrees |
| 26624 | | atoms outside contour = 1340, contour level = 0.0037635 |
| 26625 | | |
| 26626 | | Position of copy of CopZ2_Q9CTG7.pdb (#47) relative to |
| 26627 | | postprocess_20231221.mrc (#24) coordinates: |
| 26628 | | Matrix rotation and translation |
| 26629 | | 0.98595218 0.16512297 0.02515331 307.82261447 |
| 26630 | | -0.16513598 0.94106697 0.29516614 159.19782246 |
| 26631 | | 0.02506776 -0.29517341 0.95511478 207.28684221 |
| 26632 | | Axis -0.87271466 0.00012646 -0.48823059 |
| 26633 | | Axis point 0.00000000 167.50093651 -506.06500811 |
| 26634 | | Rotation angle (degrees) 19.76847979 |
| 26635 | | Shift along axis -369.82495205 |
| 26636 | | |
| 26637 | | |
| 26638 | | > fitmap #47 inMap #24 |
| 26639 | | |
| 26640 | | Fit molecule copy of CopZ2_Q9CTG7.pdb (#47) to map postprocess_20231221.mrc |
| 26641 | | (#24) using 1463 atoms |
| 26642 | | average map value = 0.002919, steps = 64 |
| 26643 | | shifted from previous position = 0.0295 |
| 26644 | | rotated from previous position = 0.055 degrees |
| 26645 | | atoms outside contour = 1341, contour level = 0.0037635 |
| 26646 | | |
| 26647 | | Position of copy of CopZ2_Q9CTG7.pdb (#47) relative to |
| 26648 | | postprocess_20231221.mrc (#24) coordinates: |
| 26649 | | Matrix rotation and translation |
| 26650 | | 0.98589432 0.16555539 0.02457203 307.82081110 |
| 26651 | | -0.16536131 0.94084161 0.29575782 159.21269344 |
| 26652 | | 0.02584592 -0.29564922 0.95494686 207.31580657 |
| 26653 | | Axis -0.87267505 -0.00187973 -0.48829779 |
| 26654 | | Axis point 0.00000000 166.46445678 -502.67182785 |
| 26655 | | Rotation angle (degrees) 19.80665676 |
| 26656 | | Shift along axis -370.15866765 |
| 26657 | | |
| 26658 | | |
| 26659 | | > fitmap #47 inMap #24 |
| 26660 | | |
| 26661 | | Fit molecule copy of CopZ2_Q9CTG7.pdb (#47) to map postprocess_20231221.mrc |
| 26662 | | (#24) using 1463 atoms |
| 26663 | | average map value = 0.002919, steps = 64 |
| 26664 | | shifted from previous position = 0.0105 |
| 26665 | | rotated from previous position = 0.0177 degrees |
| 26666 | | atoms outside contour = 1340, contour level = 0.0037635 |
| 26667 | | |
| 26668 | | Position of copy of CopZ2_Q9CTG7.pdb (#47) relative to |
| 26669 | | postprocess_20231221.mrc (#24) coordinates: |
| 26670 | | Matrix rotation and translation |
| 26671 | | 0.98590281 0.16550848 0.02454742 307.81864064 |
| 26672 | | -0.16531710 0.94094037 0.29546820 159.21440921 |
| 26673 | | 0.02580484 -0.29536104 0.95503714 207.30437908 |
| 26674 | | Axis -0.87252894 -0.00185695 -0.48855890 |
| 26675 | | Axis point 0.00000000 166.20704661 -503.30600137 |
| 26676 | | Rotation angle (degrees) 19.78994934 |
| 26677 | | Shift along axis -370.15672507 |
| 26678 | | |
| 26679 | | |
| 26680 | | > view matrix models |
| 26681 | | > #35,0.86128,-0.068194,0.50354,368.76,-0.50035,0.058928,0.86381,116.92,-0.088579,-0.99593,0.016632,197.82 |
| 26682 | | |
| 26683 | | > view matrix models |
| 26684 | | > #35,0.86128,-0.068194,0.50354,368.77,-0.50035,0.058928,0.86381,117.15,-0.088579,-0.99593,0.016632,199.22 |
| 26685 | | |
| 26686 | | > fitmap #47 inMap #24 |
| 26687 | | |
| 26688 | | Fit molecule copy of CopZ2_Q9CTG7.pdb (#47) to map postprocess_20231221.mrc |
| 26689 | | (#24) using 1463 atoms |
| 26690 | | average map value = 0.002919, steps = 48 |
| 26691 | | shifted from previous position = 0.0117 |
| 26692 | | rotated from previous position = 0.0284 degrees |
| 26693 | | atoms outside contour = 1341, contour level = 0.0037635 |
| 26694 | | |
| 26695 | | Position of copy of CopZ2_Q9CTG7.pdb (#47) relative to |
| 26696 | | postprocess_20231221.mrc (#24) coordinates: |
| 26697 | | Matrix rotation and translation |
| 26698 | | 0.98595545 0.16514513 0.02487809 307.82426994 |
| 26699 | | -0.16506674 0.94097017 0.29551327 159.20472438 |
| 26700 | | 0.02539304 -0.29546947 0.95501464 207.29997700 |
| 26701 | | Axis -0.87297040 -0.00076065 -0.48777259 |
| 26702 | | Axis point 0.00000000 167.63452220 -504.30181862 |
| 26703 | | Rotation angle (degrees) 19.78487695 |
| 26704 | | Shift along axis -369.95782203 |
| 26705 | | |
| 26706 | | |
| 26707 | | > fitmap #47 inMap #24 |
| 26708 | | |
| 26709 | | Fit molecule copy of CopZ2_Q9CTG7.pdb (#47) to map postprocess_20231221.mrc |
| 26710 | | (#24) using 1463 atoms |
| 26711 | | average map value = 0.002919, steps = 48 |
| 26712 | | shifted from previous position = 0.0395 |
| 26713 | | rotated from previous position = 0.0746 degrees |
| 26714 | | atoms outside contour = 1339, contour level = 0.0037635 |
| 26715 | | |
| 26716 | | Position of copy of CopZ2_Q9CTG7.pdb (#47) relative to |
| 26717 | | postprocess_20231221.mrc (#24) coordinates: |
| 26718 | | Matrix rotation and translation |
| 26719 | | 0.98600822 0.16470981 0.02566038 307.83169797 |
| 26720 | | -0.16490528 0.94127963 0.29461651 159.19101872 |
| 26721 | | 0.02437263 -0.29472583 0.95527098 207.25830383 |
| 26722 | | Axis -0.87276733 0.00190705 -0.48813272 |
| 26723 | | Axis point 0.00000000 168.46706398 -509.14759745 |
| 26724 | | Rotation angle (degrees) 19.73245852 |
| 26725 | | Shift along axis -369.53142265 |
| 26726 | | |
| 26727 | | |
| 26728 | | > fitmap #35 inMap #24 |
| 26729 | | |
| 26730 | | Fit molecule copy of CopZ2_Q9CTG7.pdb (#35) to map postprocess_20231221.mrc |
| 26731 | | (#24) using 1463 atoms |
| 26732 | | average map value = 0.003943, steps = 76 |
| 26733 | | shifted from previous position = 3.19 |
| 26734 | | rotated from previous position = 15.6 degrees |
| 26735 | | atoms outside contour = 807, contour level = 0.0037635 |
| 26736 | | |
| 26737 | | Position of copy of CopZ2_Q9CTG7.pdb (#35) relative to |
| 26738 | | postprocess_20231221.mrc (#24) coordinates: |
| 26739 | | Matrix rotation and translation |
| 26740 | | -0.81856676 0.29507642 -0.49282696 229.55206706 |
| 26741 | | 0.42680317 0.88664782 -0.17803010 242.02712600 |
| 26742 | | 0.38443146 -0.35606962 -0.85171997 217.29612729 |
| 26743 | | Axis -0.19677594 -0.96957876 0.14558933 |
| 26744 | | Axis point 58.96405572 0.00000000 149.10399676 |
| 26745 | | Rotation angle (degrees) 153.10277520 |
| 26746 | | Shift along axis -248.19868563 |
| 26747 | | |
| 26748 | | |
| 26749 | | > select subtract #35 |
| 26750 | | |
| 26751 | | Nothing selected |
| 26752 | | |
| 26753 | | > show #33 models |
| 26754 | | |
| 26755 | | > select add #33 |
| 26756 | | |
| 26757 | | 1420 atoms, 1441 bonds, 177 residues, 1 model selected |
| 26758 | | |
| 26759 | | > view matrix models |
| 26760 | | > #33,-0.33953,0.93867,-0.060093,373.46,-0.72219,-0.21922,0.65604,118.03,0.60263,0.26614,0.75233,193.62 |
| 26761 | | |
| 26762 | | > ui mousemode right "rotate selected models" |
| 26763 | | |
| 26764 | | > view matrix models |
| 26765 | | > #33,-0.61937,0.78508,-0.0050767,371.62,-0.66718,-0.52292,0.5305,115.73,0.41383,0.33196,0.84767,193.73 |
| 26766 | | |
| 26767 | | > ui mousemode right "translate selected models" |
| 26768 | | |
| 26769 | | > view matrix models |
| 26770 | | > #33,-0.61937,0.78508,-0.0050767,367.56,-0.66718,-0.52292,0.5305,116.75,0.41383,0.33196,0.84767,193.62 |
| 26771 | | |
| 26772 | | > view matrix models |
| 26773 | | > #33,-0.61937,0.78508,-0.0050767,366.43,-0.66718,-0.52292,0.5305,117.56,0.41383,0.33196,0.84767,199.06 |
| 26774 | | |
| 26775 | | > view matrix models |
| 26776 | | > #33,-0.61937,0.78508,-0.0050767,366.75,-0.66718,-0.52292,0.5305,114.55,0.41383,0.33196,0.84767,197.9 |
| 26777 | | |
| 26778 | | > fitmap #33 inMap #24 |
| 26779 | | |
| 26780 | | Fit molecule copy of CopZ1_P61924.pdb (#33) to map postprocess_20231221.mrc |
| 26781 | | (#24) using 1420 atoms |
| 26782 | | average map value = 0.003933, steps = 72 |
| 26783 | | shifted from previous position = 2.52 |
| 26784 | | rotated from previous position = 27.2 degrees |
| 26785 | | atoms outside contour = 737, contour level = 0.0037635 |
| 26786 | | |
| 26787 | | Position of copy of CopZ1_P61924.pdb (#33) relative to |
| 26788 | | postprocess_20231221.mrc (#24) coordinates: |
| 26789 | | Matrix rotation and translation |
| 26790 | | 0.16509917 -0.93968387 -0.29956050 230.49601442 |
| 26791 | | -0.38636569 0.21783235 -0.89625366 241.46100099 |
| 26792 | | 0.90744908 0.26371063 -0.32709767 218.19937857 |
| 26793 | | Axis 0.65790876 -0.68459192 0.31383111 |
| 26794 | | Axis point 143.36250261 0.00000000 249.48356769 |
| 26795 | | Rotation angle (degrees) 118.16959859 |
| 26796 | | Shift along axis 54.82085118 |
| 26797 | | |
| 26798 | | |
| 26799 | | > select subtract #33 |
| 26800 | | |
| 26801 | | Nothing selected |
| 26802 | | |
| 26803 | | > hide #!24 models |
| 26804 | | |
| 26805 | | > show #!24 models |
| 26806 | | |
| 26807 | | > hide #35 models |
| 26808 | | |
| 26809 | | > hide #33 models |
| 26810 | | |
| 26811 | | > show #34 models |
| 26812 | | |
| 26813 | | > fitmap #34 inMap #24 |
| 26814 | | |
| 26815 | | Fit molecule copy of Golph3_ Q9CRA5.pdb (#34) to map postprocess_20231221.mrc |
| 26816 | | (#24) using 2367 atoms |
| 26817 | | average map value = 0.0031, steps = 44 |
| 26818 | | shifted from previous position = 0.0773 |
| 26819 | | rotated from previous position = 0.123 degrees |
| 26820 | | atoms outside contour = 1759, contour level = 0.0037635 |
| 26821 | | |
| 26822 | | Position of copy of Golph3_ Q9CRA5.pdb (#34) relative to |
| 26823 | | postprocess_20231221.mrc (#24) coordinates: |
| 26824 | | Matrix rotation and translation |
| 26825 | | 0.66134655 -0.23494320 0.71233590 198.01384438 |
| 26826 | | -0.68835567 -0.56736615 0.45195367 233.20446720 |
| 26827 | | 0.29797183 -0.78923846 -0.53695013 191.32633148 |
| 26828 | | Axis -0.89625794 0.29920999 -0.32740662 |
| 26829 | | Axis point 0.00000000 180.07319061 -4.27043840 |
| 26830 | | Rotation angle (degrees) 136.17721024 |
| 26831 | | Shift along axis -170.33588153 |
| 26832 | | |
| 26833 | | |
| 26834 | | > fitmap #34 inMap #24 |
| 26835 | | |
| 26836 | | Fit molecule copy of Golph3_ Q9CRA5.pdb (#34) to map postprocess_20231221.mrc |
| 26837 | | (#24) using 2367 atoms |
| 26838 | | average map value = 0.0031, steps = 44 |
| 26839 | | shifted from previous position = 0.0313 |
| 26840 | | rotated from previous position = 0.053 degrees |
| 26841 | | atoms outside contour = 1755, contour level = 0.0037635 |
| 26842 | | |
| 26843 | | Position of copy of Golph3_ Q9CRA5.pdb (#34) relative to |
| 26844 | | postprocess_20231221.mrc (#24) coordinates: |
| 26845 | | Matrix rotation and translation |
| 26846 | | 0.66103116 -0.23578123 0.71235175 198.04144717 |
| 26847 | | -0.68874957 -0.56738370 0.45133110 233.20691681 |
| 26848 | | 0.29776137 -0.78897589 -0.53745252 191.32116399 |
| 26849 | | Axis -0.89618237 0.29956180 -0.32729175 |
| 26850 | | Axis point 0.00000000 180.10706491 -4.22572784 |
| 26851 | | Rotation angle (degrees) 136.21178130 |
| 26852 | | Shift along axis -170.23920897 |
| 26853 | | |
| 26854 | | |
| 26855 | | > fitmap #34 inMap #24 |
| 26856 | | |
| 26857 | | Fit molecule copy of Golph3_ Q9CRA5.pdb (#34) to map postprocess_20231221.mrc |
| 26858 | | (#24) using 2367 atoms |
| 26859 | | average map value = 0.0031, steps = 48 |
| 26860 | | shifted from previous position = 0.0543 |
| 26861 | | rotated from previous position = 0.062 degrees |
| 26862 | | atoms outside contour = 1751, contour level = 0.0037635 |
| 26863 | | |
| 26864 | | Position of copy of Golph3_ Q9CRA5.pdb (#34) relative to |
| 26865 | | postprocess_20231221.mrc (#24) coordinates: |
| 26866 | | Matrix rotation and translation |
| 26867 | | 0.66039269 -0.23659311 0.71267468 198.05627709 |
| 26868 | | -0.68944268 -0.56713155 0.45058916 233.24789908 |
| 26869 | | 0.29757401 -0.78891413 -0.53764692 191.34687900 |
| 26870 | | Axis -0.89599403 0.30006191 -0.32734928 |
| 26871 | | Axis point 0.00000000 180.19357918 -4.22356963 |
| 26872 | | Rotation angle (degrees) 136.23582773 |
| 26873 | | Shift along axis -170.10569549 |
| 26874 | | |
| 26875 | | |
| 26876 | | > hide #34 models |
| 26877 | | |
| 26878 | | > show #!32 models |
| 26879 | | |
| 26880 | | > select add #32 |
| 26881 | | |
| 26882 | | 6673 atoms, 6786 bonds, 1 pseudobond, 853 residues, 2 models selected |
| 26883 | | |
| 26884 | | > view matrix models |
| 26885 | | > #32,-0.29559,0.70082,0.64922,370.15,0.41182,0.70668,-0.57534,61.218,-0.86199,0.097298,-0.4975,190.36 |
| 26886 | | |
| 26887 | | > fitmap #32 inMap #24 |
| 26888 | | |
| 26889 | | Fit molecule copy of CopG_Q9QZE5 (#32) to map postprocess_20231221.mrc (#24) |
| 26890 | | using 6673 atoms |
| 26891 | | average map value = 0.002906, steps = 120 |
| 26892 | | shifted from previous position = 4.38 |
| 26893 | | rotated from previous position = 0.0271 degrees |
| 26894 | | atoms outside contour = 5053, contour level = 0.0037635 |
| 26895 | | |
| 26896 | | Position of copy of CopG_Q9QZE5 (#32) relative to postprocess_20231221.mrc |
| 26897 | | (#24) coordinates: |
| 26898 | | Matrix rotation and translation |
| 26899 | | 0.47195635 -0.63843665 -0.60799329 228.86598331 |
| 26900 | | 0.47812803 -0.39405195 0.78493098 278.59789211 |
| 26901 | | -0.74070965 -0.66115180 0.11927914 254.30588618 |
| 26902 | | Axis -0.78943333 0.07245140 0.60954558 |
| 26903 | | Axis point 0.00000000 256.45096103 100.02298261 |
| 26904 | | Rotation angle (degrees) 113.66624324 |
| 26905 | | Shift along axis -5.47859762 |
| 26906 | | |
| 26907 | | |
| 26908 | | > select subtract #32 |
| 26909 | | |
| 26910 | | Nothing selected |
| 26911 | | |
| 26912 | | > hide #!32 models |
| 26913 | | |
| 26914 | | > show #26 models |
| 26915 | | |
| 26916 | | > hide #26 models |
| 26917 | | |
| 26918 | | > show #27 models |
| 26919 | | |
| 26920 | | > fitmap #27 inMap #24 |
| 26921 | | |
| 26922 | | Fit molecule copy of CopB_Q9JIF7.pdb (#27) to map postprocess_20231221.mrc |
| 26923 | | (#24) using 7501 atoms |
| 26924 | | average map value = 0.002923, steps = 136 |
| 26925 | | shifted from previous position = 0.0167 |
| 26926 | | rotated from previous position = 0.0633 degrees |
| 26927 | | atoms outside contour = 5723, contour level = 0.0037635 |
| 26928 | | |
| 26929 | | Position of copy of CopB_Q9JIF7.pdb (#27) relative to postprocess_20231221.mrc |
| 26930 | | (#24) coordinates: |
| 26931 | | Matrix rotation and translation |
| 26932 | | -0.04120464 -0.73285767 0.67913314 172.36563468 |
| 26933 | | -0.03806305 0.68036835 0.73188122 204.54939790 |
| 26934 | | -0.99842545 0.00430702 -0.05592913 236.23896056 |
| 26935 | | Axis -0.37195243 0.85760601 0.35519477 |
| 26936 | | Axis point 209.29692826 0.00000000 -39.84186820 |
| 26937 | | Rotation angle (degrees) 102.02759160 |
| 26938 | | Shift along axis 195.22181885 |
| 26939 | | |
| 26940 | | |
| 26941 | | > fitmap #27 inMap #24 |
| 26942 | | |
| 26943 | | Fit molecule copy of CopB_Q9JIF7.pdb (#27) to map postprocess_20231221.mrc |
| 26944 | | (#24) using 7501 atoms |
| 26945 | | average map value = 0.002923, steps = 96 |
| 26946 | | shifted from previous position = 0.0318 |
| 26947 | | rotated from previous position = 0.0229 degrees |
| 26948 | | atoms outside contour = 5718, contour level = 0.0037635 |
| 26949 | | |
| 26950 | | Position of copy of CopB_Q9JIF7.pdb (#27) relative to postprocess_20231221.mrc |
| 26951 | | (#24) coordinates: |
| 26952 | | Matrix rotation and translation |
| 26953 | | -0.04158996 -0.73289933 0.67906469 172.37761621 |
| 26954 | | -0.03813008 0.68032190 0.73192090 204.57940442 |
| 26955 | | -0.99840692 0.00454777 -0.05624008 236.23956794 |
| 26956 | | Axis -0.37187976 0.85763098 0.35521056 |
| 26957 | | Axis point 209.25825333 0.00000000 -39.80666611 |
| 26958 | | Rotation angle (degrees) 102.04934748 |
| 26959 | | Shift along axis 195.26467926 |
| 26960 | | |
| 26961 | | |
| 26962 | | > hide #27 models |
| 26963 | | |
| 26964 | | > show #26 models |
| 26965 | | |
| 26966 | | > hide #26 models |
| 26967 | | |
| 26968 | | > show #3 models |
| 26969 | | |
| 26970 | | > show #4 models |
| 26971 | | |
| 26972 | | > show #5 models |
| 26973 | | |
| 26974 | | > show #6 models |
| 26975 | | |
| 26976 | | > show #7 models |
| 26977 | | |
| 26978 | | > show #8 models |
| 26979 | | |
| 26980 | | > show #!9 models |
| 26981 | | |
| 26982 | | > show #10 models |
| 26983 | | |
| 26984 | | > show #11 models |
| 26985 | | |
| 26986 | | > show #12 models |
| 26987 | | |
| 26988 | | > show #26 models |
| 26989 | | |
| 26990 | | > show #27 models |
| 26991 | | |
| 26992 | | > show #28 models |
| 26993 | | |
| 26994 | | > show #29 models |
| 26995 | | |
| 26996 | | > show #30 models |
| 26997 | | |
| 26998 | | > show #31 models |
| 26999 | | |
| 27000 | | > show #!32 models |
| 27001 | | |
| 27002 | | > show #33 models |
| 27003 | | |
| 27004 | | > show #34 models |
| 27005 | | |
| 27006 | | > show #35 models |
| 27007 | | |
| 27008 | | > show #!36 models |
| 27009 | | |
| 27010 | | > hide #!36 models |
| 27011 | | |
| 27012 | | > show #!37 models |
| 27013 | | |
| 27014 | | > hide #!37 models |
| 27015 | | |
| 27016 | | > show #!36 models |
| 27017 | | |
| 27018 | | > show #!37 models |
| 27019 | | |
| 27020 | | > hide #!37 models |
| 27021 | | |
| 27022 | | > show #38 models |
| 27023 | | |
| 27024 | | > show #39 models |
| 27025 | | |
| 27026 | | > show #40 models |
| 27027 | | |
| 27028 | | > hide #40 models |
| 27029 | | |
| 27030 | | > show #40 models |
| 27031 | | |
| 27032 | | > hide #40 models |
| 27033 | | |
| 27034 | | > show #40 models |
| 27035 | | |
| 27036 | | > show #41 models |
| 27037 | | |
| 27038 | | > show #42 models |
| 27039 | | |
| 27040 | | > show #43 models |
| 27041 | | |
| 27042 | | > hide #43 models |
| 27043 | | |
| 27044 | | > show #43 models |
| 27045 | | |
| 27046 | | > show #!44 models |
| 27047 | | |
| 27048 | | > hide #!44 models |
| 27049 | | |
| 27050 | | > show #!44 models |
| 27051 | | |
| 27052 | | > show #45 models |
| 27053 | | |
| 27054 | | > show #46 models |
| 27055 | | |
| 27056 | | > show #47 models |
| 27057 | | |
| 27058 | | > volume #36 level 0.003958 |
| 27059 | | |
| 27060 | | > hide #47 models |
| 27061 | | |
| 27062 | | > hide #46 models |
| 27063 | | |
| 27064 | | > hide #45 models |
| 27065 | | |
| 27066 | | > hide #!44 models |
| 27067 | | |
| 27068 | | > hide #43 models |
| 27069 | | |
| 27070 | | > hide #42 models |
| 27071 | | |
| 27072 | | > hide #41 models |
| 27073 | | |
| 27074 | | > hide #40 models |
| 27075 | | |
| 27076 | | > hide #39 models |
| 27077 | | |
| 27078 | | > hide #38 models |
| 27079 | | |
| 27080 | | > hide #!36 models |
| 27081 | | |
| 27082 | | > show #!37 models |
| 27083 | | |
| 27084 | | > hide #!37 models |
| 27085 | | |
| 27086 | | > show #!19 models |
| 27087 | | |
| 27088 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 27089 | | > dataset/Chimera sessions/20240126_linkage_3_fitting_v1.cxs" |
| 27090 | | |
| 27091 | | ——— End of log from Fri Jan 26 14:05:24 2024 ——— |
| 27092 | | |
| 27093 | | opened ChimeraX session |
| 27094 | | |
| 27095 | | > show #!60 models |
| 27096 | | |
| 27097 | | > hide #!60 models |
| 27098 | | |
| 27099 | | > show #!60 models |
| 27100 | | |
| 27101 | | > hide #!60 models |
| 27102 | | |
| 27103 | | > hide #!1 models |
| 27104 | | |
| 27105 | | > show #!1 models |
| 27106 | | |
| 27107 | | > hide #!1 models |
| 27108 | | |
| 27109 | | > show #!1 models |
| 27110 | | |
| 27111 | | > hide #3 models |
| 27112 | | |
| 27113 | | > show #3 models |
| 27114 | | |
| 27115 | | > hide #!19 models |
| 27116 | | |
| 27117 | | > show #!23 models |
| 27118 | | |
| 27119 | | > hide #!23 models |
| 27120 | | |
| 27121 | | > show #!21 models |
| 27122 | | |
| 27123 | | > show #!2 models |
| 27124 | | |
| 27125 | | > hide #!1 models |
| 27126 | | |
| 27127 | | > show #!1 models |
| 27128 | | |
| 27129 | | > hide #!2 models |
| 27130 | | |
| 27131 | | > hide #3 models |
| 27132 | | |
| 27133 | | > hide #4 models |
| 27134 | | |
| 27135 | | > hide #5 models |
| 27136 | | |
| 27137 | | > hide #6 models |
| 27138 | | |
| 27139 | | > hide #7 models |
| 27140 | | |
| 27141 | | > hide #8 models |
| 27142 | | |
| 27143 | | > hide #!9 models |
| 27144 | | |
| 27145 | | > hide #10 models |
| 27146 | | |
| 27147 | | > hide #11 models |
| 27148 | | |
| 27149 | | > hide #12 models |
| 27150 | | |
| 27151 | | > hide #!21 models |
| 27152 | | |
| 27153 | | > show #!21 models |
| 27154 | | |
| 27155 | | > hide #!24 models |
| 27156 | | |
| 27157 | | > show #!24 models |
| 27158 | | |
| 27159 | | > hide #26 models |
| 27160 | | |
| 27161 | | > hide #27 models |
| 27162 | | |
| 27163 | | > hide #28 models |
| 27164 | | |
| 27165 | | > hide #29 models |
| 27166 | | |
| 27167 | | > hide #30 models |
| 27168 | | |
| 27169 | | > hide #31 models |
| 27170 | | |
| 27171 | | > hide #!32 models |
| 27172 | | |
| 27173 | | > hide #33 models |
| 27174 | | |
| 27175 | | > hide #34 models |
| 27176 | | |
| 27177 | | > hide #35 models |
| 27178 | | |
| 27179 | | > show #!36 models |
| 27180 | | |
| 27181 | | > show #!48 models |
| 27182 | | |
| 27183 | | > hide #!48 models |
| 27184 | | |
| 27185 | | > show #!48 models |
| 27186 | | |
| 27187 | | > hide #!48 models |
| 27188 | | |
| 27189 | | > close #60 |
| 27190 | | |
| 27191 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 27192 | | > dataset/Chimera sessions/20240212_linkage_4_fitting_v1.cxs" |
| 27193 | | |
| 27194 | | > hide #!24 models |
| 27195 | | |
| 27196 | | > show #!24 models |
| 27197 | | |
| 27198 | | > show #!25 models |
| 27199 | | |
| 27200 | | > hide #!24 models |
| 27201 | | |
| 27202 | | > hide #!36 models |
| 27203 | | |
| 27204 | | > select add #25 |
| 27205 | | |
| 27206 | | 2 models selected |
| 27207 | | |
| 27208 | | > open "/Users/becca/Desktop/Postdoc/Structure files/COPI |
| 27209 | | > structures/5nzv_COPI_coat_linkage4.cif" |
| 27210 | | |
| 27211 | | 5nzv_COPI_coat_linkage4.cif title: |
| 27212 | | The structure of the COPI coat linkage IV [more info...] |
| 27213 | | |
| 27214 | | Chain information for 5nzv_COPI_coat_linkage4.cif #60 |
| 27215 | | --- |
| 27216 | | Chain | Description | UniProt |
| 27217 | | A H | Coatomer subunit alpha | COPA_MOUSE 1-1224 |
| 27218 | | B I | Coatomer subunit beta | COPB_MOUSE 16-968 |
| 27219 | | C J | Coatomer subunit beta' | COPB2_MOUSE 1-905 |
| 27220 | | D N | Coatomer subunit delta | COPD_MOUSE 1-511 |
| 27221 | | E O | Coatomer subunit epsilon | COPE_MOUSE 1-308 |
| 27222 | | F M P R T | ADP-ribosylation factor 1 | ARF1_YEAST 1-181 |
| 27223 | | G K Q | Coatomer subunit gamma-1 | COPG1_MOUSE 1-874 |
| 27224 | | L S U Z | Coatomer subunit zeta-1 | COPZ1_MOUSE 1-177 |
| 27225 | | |
| 27226 | | |
| 27227 | | > hide #!60 atoms |
| 27228 | | |
| 27229 | | > show #!60 cartoons |
| 27230 | | |
| 27231 | | [Repeated 1 time(s)] |
| 27232 | | |
| 27233 | | > hide #!60 models |
| 27234 | | |
| 27235 | | > show #!60 models |
| 27236 | | |
| 27237 | | > select subtract #25 |
| 27238 | | |
| 27239 | | Nothing selected |
| 27240 | | |
| 27241 | | > select #60/A |
| 27242 | | |
| 27243 | | 4503 atoms, 4501 bonds, 1 pseudobond, 1126 residues, 2 models selected |
| 27244 | | |
| 27245 | | > color sel blue |
| 27246 | | |
| 27247 | | > select #60/H |
| 27248 | | |
| 27249 | | 4503 atoms, 4501 bonds, 1 pseudobond, 1126 residues, 2 models selected |
| 27250 | | |
| 27251 | | > color sel blue |
| 27252 | | |
| 27253 | | > select #60/B |
| 27254 | | |
| 27255 | | 3198 atoms, 3193 bonds, 4 pseudobonds, 800 residues, 2 models selected |
| 27256 | | |
| 27257 | | > color sel dark green |
| 27258 | | |
| 27259 | | > select #60/I |
| 27260 | | |
| 27261 | | 3198 atoms, 3193 bonds, 4 pseudobonds, 800 residues, 2 models selected |
| 27262 | | |
| 27263 | | > color sel dark green |
| 27264 | | |
| 27265 | | > select #60/C |
| 27266 | | |
| 27267 | | 3371 atoms, 3370 bonds, 843 residues, 1 model selected |
| 27268 | | |
| 27269 | | > color sel cyan |
| 27270 | | |
| 27271 | | > select #60/J |
| 27272 | | |
| 27273 | | 3371 atoms, 3370 bonds, 843 residues, 1 model selected |
| 27274 | | |
| 27275 | | > color sel cyan |
| 27276 | | |
| 27277 | | > select #60/D |
| 27278 | | |
| 27279 | | 1707 atoms, 1704 bonds, 2 pseudobonds, 427 residues, 2 models selected |
| 27280 | | |
| 27281 | | > color sel sienna |
| 27282 | | |
| 27283 | | > select #60/N |
| 27284 | | |
| 27285 | | 706 atoms, 704 bonds, 1 pseudobond, 177 residues, 2 models selected |
| 27286 | | |
| 27287 | | > color sel sienna |
| 27288 | | |
| 27289 | | [Repeated 1 time(s)] |
| 27290 | | |
| 27291 | | > select #60/E |
| 27292 | | |
| 27293 | | 1169 atoms, 1168 bonds, 292 residues, 1 model selected |
| 27294 | | |
| 27295 | | > color sel orange |
| 27296 | | |
| 27297 | | > select #60/O |
| 27298 | | |
| 27299 | | 1169 atoms, 1168 bonds, 292 residues, 1 model selected |
| 27300 | | |
| 27301 | | > color sel orange |
| 27302 | | |
| 27303 | | > select #60/G |
| 27304 | | |
| 27305 | | 3190 atoms, 3188 bonds, 1 pseudobond, 798 residues, 2 models selected |
| 27306 | | |
| 27307 | | > color sel lime green |
| 27308 | | |
| 27309 | | > select #60/K |
| 27310 | | |
| 27311 | | 2239 atoms, 2237 bonds, 1 pseudobond, 560 residues, 2 models selected |
| 27312 | | |
| 27313 | | > color sel lime green |
| 27314 | | |
| 27315 | | > select #60/Q |
| 27316 | | |
| 27317 | | 2239 atoms, 2237 bonds, 1 pseudobond, 560 residues, 2 models selected |
| 27318 | | |
| 27319 | | > color sel lime green |
| 27320 | | |
| 27321 | | > select #60/L |
| 27322 | | |
| 27323 | | 555 atoms, 554 bonds, 139 residues, 1 model selected |
| 27324 | | |
| 27325 | | > color sel yellow |
| 27326 | | |
| 27327 | | > select #60/S |
| 27328 | | |
| 27329 | | 555 atoms, 554 bonds, 139 residues, 1 model selected |
| 27330 | | |
| 27331 | | > color sel yellow |
| 27332 | | |
| 27333 | | > select #60/U |
| 27334 | | |
| 27335 | | 555 atoms, 554 bonds, 139 residues, 1 model selected |
| 27336 | | |
| 27337 | | > color sel yellow |
| 27338 | | |
| 27339 | | > select #60/Z |
| 27340 | | |
| 27341 | | 555 atoms, 554 bonds, 139 residues, 1 model selected |
| 27342 | | |
| 27343 | | > color sel yellow |
| 27344 | | |
| 27345 | | > select #60/F |
| 27346 | | |
| 27347 | | 635 atoms, 634 bonds, 159 residues, 1 model selected |
| 27348 | | |
| 27349 | | > color sel hot pink |
| 27350 | | |
| 27351 | | > select #60/M |
| 27352 | | |
| 27353 | | 635 atoms, 634 bonds, 159 residues, 1 model selected |
| 27354 | | |
| 27355 | | > color sel hot pink |
| 27356 | | |
| 27357 | | > select #60/P |
| 27358 | | |
| 27359 | | 635 atoms, 634 bonds, 159 residues, 1 model selected |
| 27360 | | |
| 27361 | | > color sel hot pink |
| 27362 | | |
| 27363 | | > select #60/P |
| 27364 | | |
| 27365 | | 635 atoms, 634 bonds, 159 residues, 1 model selected |
| 27366 | | |
| 27367 | | > color sel hot pink |
| 27368 | | |
| 27369 | | > select #60/R |
| 27370 | | |
| 27371 | | 635 atoms, 634 bonds, 159 residues, 1 model selected |
| 27372 | | |
| 27373 | | > color sel hot pink |
| 27374 | | |
| 27375 | | > select #60/T |
| 27376 | | |
| 27377 | | 635 atoms, 634 bonds, 159 residues, 1 model selected |
| 27378 | | |
| 27379 | | > color sel hot pink |
| 27380 | | |
| 27381 | | [Repeated 1 time(s)] |
| 27382 | | |
| 27383 | | > select add #60 |
| 27384 | | |
| 27385 | | 39958 atoms, 39920 bonds, 16 pseudobonds, 9995 residues, 2 models selected |
| 27386 | | |
| 27387 | | > select subtract #60 |
| 27388 | | |
| 27389 | | Nothing selected |
| 27390 | | |
| 27391 | | > hide #!25 models |
| 27392 | | |
| 27393 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 27394 | | > dataset/Chimera sessions/20240212_linkage_4_fitting_v2.cxs" |
| 27395 | | |
| 27396 | | > show #3 models |
| 27397 | | |
| 27398 | | > show #4 models |
| 27399 | | |
| 27400 | | > show #5 models |
| 27401 | | |
| 27402 | | > show #6 models |
| 27403 | | |
| 27404 | | > show #7 models |
| 27405 | | |
| 27406 | | > show #8 models |
| 27407 | | |
| 27408 | | > show #!9 models |
| 27409 | | |
| 27410 | | > show #10 models |
| 27411 | | |
| 27412 | | > show #11 models |
| 27413 | | |
| 27414 | | > hide #!21 models |
| 27415 | | |
| 27416 | | > select add #60 |
| 27417 | | |
| 27418 | | 39958 atoms, 39920 bonds, 16 pseudobonds, 9995 residues, 2 models selected |
| 27419 | | |
| 27420 | | > ui mousemode right "translate selected models" |
| 27421 | | |
| 27422 | | > view matrix models #60,1,0,0,37.035,0,1,0,148.62,0,0,1,164.59 |
| 27423 | | |
| 27424 | | > ui mousemode right "rotate selected models" |
| 27425 | | |
| 27426 | | > view matrix models |
| 27427 | | > #60,0.88046,-0.40119,-0.25267,199.92,0.41104,0.9115,-0.014964,65.488,0.23631,-0.090682,0.96744,129.73 |
| 27428 | | |
| 27429 | | > ui mousemode right "translate selected models" |
| 27430 | | |
| 27431 | | > view matrix models |
| 27432 | | > #60,0.88046,-0.40119,-0.25267,168.79,0.41104,0.9115,-0.014964,111.56,0.23631,-0.090682,0.96744,138.66 |
| 27433 | | |
| 27434 | | > view matrix models |
| 27435 | | > #60,0.88046,-0.40119,-0.25267,173.29,0.41104,0.9115,-0.014964,98.13,0.23631,-0.090682,0.96744,98.534 |
| 27436 | | |
| 27437 | | > ui mousemode right "rotate selected models" |
| 27438 | | |
| 27439 | | > view matrix models |
| 27440 | | > #60,0.75569,-0.38828,-0.52742,256.19,0.54343,0.82121,0.17406,46.108,0.36553,-0.41815,0.83159,160.09 |
| 27441 | | |
| 27442 | | > view matrix models |
| 27443 | | > #60,0.76494,-0.3632,-0.53193,249.54,0.52274,0.83256,0.18326,47.209,0.37631,-0.41825,0.82672,158.33 |
| 27444 | | |
| 27445 | | > ui mousemode right "translate selected models" |
| 27446 | | |
| 27447 | | > view matrix models |
| 27448 | | > #60,0.76494,-0.3632,-0.53193,227.87,0.52274,0.83256,0.18326,56.959,0.37631,-0.41825,0.82672,126.46 |
| 27449 | | |
| 27450 | | > view matrix models |
| 27451 | | > #60,0.76494,-0.3632,-0.53193,220.4,0.52274,0.83256,0.18326,55.122,0.37631,-0.41825,0.82672,131.33 |
| 27452 | | |
| 27453 | | > select subtract #60 |
| 27454 | | |
| 27455 | | Nothing selected |
| 27456 | | |
| 27457 | | > ui tool show "Fit in Map" |
| 27458 | | |
| 27459 | | > show #!21 models |
| 27460 | | |
| 27461 | | > hide #!1 models |
| 27462 | | |
| 27463 | | > hide #3 models |
| 27464 | | |
| 27465 | | > show #3 models |
| 27466 | | |
| 27467 | | > hide #3 models |
| 27468 | | |
| 27469 | | > hide #4 models |
| 27470 | | |
| 27471 | | > hide #5 models |
| 27472 | | |
| 27473 | | > hide #6 models |
| 27474 | | |
| 27475 | | > hide #7 models |
| 27476 | | |
| 27477 | | > show #7 models |
| 27478 | | |
| 27479 | | > hide #7 models |
| 27480 | | |
| 27481 | | > show #7 models |
| 27482 | | |
| 27483 | | > hide #8 models |
| 27484 | | |
| 27485 | | > hide #!9 models |
| 27486 | | |
| 27487 | | > hide #10 models |
| 27488 | | |
| 27489 | | > hide #11 models |
| 27490 | | |
| 27491 | | > select add #60 |
| 27492 | | |
| 27493 | | 39958 atoms, 39920 bonds, 16 pseudobonds, 9995 residues, 2 models selected |
| 27494 | | |
| 27495 | | > view matrix models |
| 27496 | | > #60,0.76494,-0.3632,-0.53193,216.67,0.52274,0.83256,0.18326,47.042,0.37631,-0.41825,0.82672,132 |
| 27497 | | |
| 27498 | | > view matrix models |
| 27499 | | > #60,0.76494,-0.3632,-0.53193,218.27,0.52274,0.83256,0.18326,38.966,0.37631,-0.41825,0.82672,133.84 |
| 27500 | | |
| 27501 | | > view matrix models |
| 27502 | | > #60,0.76494,-0.3632,-0.53193,228.16,0.52274,0.83256,0.18326,37.074,0.37631,-0.41825,0.82672,136.97 |
| 27503 | | |
| 27504 | | > fitmap #60 inMap #21 |
| 27505 | | |
| 27506 | | Fit molecule 5nzv_COPI_coat_linkage4.cif (#60) to map |
| 27507 | | COPI_golph_linkage4_postprocess.mrc (#21) using 39958 atoms |
| 27508 | | average map value = 0.5448, steps = 116 |
| 27509 | | shifted from previous position = 17.2 |
| 27510 | | rotated from previous position = 12.4 degrees |
| 27511 | | atoms outside contour = 14338, contour level = 0.49979 |
| 27512 | | |
| 27513 | | Position of 5nzv_COPI_coat_linkage4.cif (#60) relative to |
| 27514 | | COPI_golph_linkage4_postprocess.mrc (#21) coordinates: |
| 27515 | | Matrix rotation and translation |
| 27516 | | -0.86035372 0.50969732 -0.00033404 340.70998833 |
| 27517 | | -0.50956209 -0.86014019 -0.02247969 533.98917184 |
| 27518 | | -0.01174515 -0.01917027 0.99974725 172.36839673 |
| 27519 | | Axis 0.00324666 0.01119474 -0.99993207 |
| 27520 | | Axis point 244.03857465 221.21265529 0.00000000 |
| 27521 | | Rotation angle (degrees) 149.35852660 |
| 27522 | | Shift along axis -165.27264720 |
| 27523 | | |
| 27524 | | |
| 27525 | | > combine #60 |
| 27526 | | |
| 27527 | | > select subtract #60 |
| 27528 | | |
| 27529 | | Nothing selected |
| 27530 | | |
| 27531 | | > select add #61 |
| 27532 | | |
| 27533 | | 39958 atoms, 39920 bonds, 16 pseudobonds, 9995 residues, 2 models selected |
| 27534 | | |
| 27535 | | > ui mousemode right "rotate selected models" |
| 27536 | | |
| 27537 | | > view matrix models |
| 27538 | | > #61,-0.88507,0.10712,-0.45297,545.09,-0.17602,-0.97792,0.11267,612.88,-0.4309,0.17945,0.88438,214.46 |
| 27539 | | |
| 27540 | | > ui mousemode right "translate selected models" |
| 27541 | | |
| 27542 | | > view matrix models |
| 27543 | | > #61,-0.88507,0.10712,-0.45297,432.57,-0.17602,-0.97792,0.11267,530.18,-0.4309,0.17945,0.88438,194.95 |
| 27544 | | |
| 27545 | | > view matrix models |
| 27546 | | > #61,-0.88507,0.10712,-0.45297,453.48,-0.17602,-0.97792,0.11267,515.8,-0.4309,0.17945,0.88438,159.62 |
| 27547 | | |
| 27548 | | > view matrix models |
| 27549 | | > #61,-0.88507,0.10712,-0.45297,427.53,-0.17602,-0.97792,0.11267,521.08,-0.4309,0.17945,0.88438,143.87 |
| 27550 | | |
| 27551 | | > ui mousemode right "rotate selected models" |
| 27552 | | |
| 27553 | | > view matrix models |
| 27554 | | > #61,-0.46993,0.75114,-0.46363,191.02,-0.72552,-0.62785,-0.28183,665.59,-0.50278,0.20393,0.84001,165.76 |
| 27555 | | |
| 27556 | | > view matrix models |
| 27557 | | > #61,-0.60124,0.60127,-0.52629,267.65,-0.48832,-0.79781,-0.35362,654.59,-0.6325,0.044382,0.77329,244.78 |
| 27558 | | |
| 27559 | | > ui mousemode right "translate selected models" |
| 27560 | | |
| 27561 | | > view matrix models |
| 27562 | | > #61,-0.60124,0.60127,-0.52629,276.46,-0.48832,-0.79781,-0.35362,684.67,-0.6325,0.044382,0.77329,254.69 |
| 27563 | | |
| 27564 | | > ui mousemode right "translate selected models" |
| 27565 | | |
| 27566 | | > view matrix models |
| 27567 | | > #61,-0.60124,0.60127,-0.52629,288.26,-0.48832,-0.79781,-0.35362,672.13,-0.6325,0.044382,0.77329,229.78 |
| 27568 | | |
| 27569 | | > ui mousemode right "rotate selected models" |
| 27570 | | |
| 27571 | | > view matrix models |
| 27572 | | > #61,-0.58591,0.54673,-0.59816,309.75,-0.38735,-0.83729,-0.38588,660.98,-0.7118,0.0056101,0.70236,271.85 |
| 27573 | | |
| 27574 | | > view matrix models |
| 27575 | | > #61,-0.68594,0.43226,-0.58535,356.31,-0.40681,-0.89478,-0.18404,638.22,-0.60331,0.11188,0.78962,205.2 |
| 27576 | | |
| 27577 | | > ui mousemode right "translate selected models" |
| 27578 | | |
| 27579 | | > view matrix models |
| 27580 | | > #61,-0.68594,0.43226,-0.58535,373.1,-0.40681,-0.89478,-0.18404,638.85,-0.60331,0.11188,0.78962,220.16 |
| 27581 | | |
| 27582 | | > fitmap #61 inMap #21 |
| 27583 | | |
| 27584 | | Fit molecule copy of 5nzv_COPI_coat_linkage4.cif (#61) to map |
| 27585 | | COPI_golph_linkage4_postprocess.mrc (#21) using 39958 atoms |
| 27586 | | average map value = 0.5448, steps = 104 |
| 27587 | | shifted from previous position = 22.2 |
| 27588 | | rotated from previous position = 16.4 degrees |
| 27589 | | atoms outside contour = 14328, contour level = 0.49979 |
| 27590 | | |
| 27591 | | Position of copy of 5nzv_COPI_coat_linkage4.cif (#61) relative to |
| 27592 | | COPI_golph_linkage4_postprocess.mrc (#21) coordinates: |
| 27593 | | Matrix rotation and translation |
| 27594 | | 0.86035795 -0.50969014 0.00039665 203.60052554 |
| 27595 | | 0.50955528 0.86014769 0.02234648 10.35119498 |
| 27596 | | -0.01173096 -0.01902386 0.99975021 172.32402514 |
| 27597 | | Axis -0.04055292 0.01188799 0.99910667 |
| 27598 | | Axis point 89.96540407 387.86258211 0.00000000 |
| 27599 | | Rotation angle (degrees) 30.66905056 |
| 27600 | | Shift along axis 164.03654079 |
| 27601 | | |
| 27602 | | |
| 27603 | | > select subtract #61 |
| 27604 | | |
| 27605 | | Nothing selected |
| 27606 | | |
| 27607 | | > hide #!61 models |
| 27608 | | |
| 27609 | | > hide #!60 models |
| 27610 | | |
| 27611 | | > show #!60 models |
| 27612 | | |
| 27613 | | > hide #!60 models |
| 27614 | | |
| 27615 | | > hide #7 models |
| 27616 | | |
| 27617 | | > show #!1 models |
| 27618 | | |
| 27619 | | > show #!2 models |
| 27620 | | |
| 27621 | | > hide #!2 models |
| 27622 | | |
| 27623 | | > hide #!1 models |
| 27624 | | |
| 27625 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 27626 | | > dataset/Chimera sessions/20240212_linkage_4_fitting_v3.cxs" |
| 27627 | | |
| 27628 | | > hide #!21 models |
| 27629 | | |
| 27630 | | > show #!21 models |
| 27631 | | |
| 27632 | | > hide #!21 models |
| 27633 | | |
| 27634 | | > show #!24 models |
| 27635 | | |
| 27636 | | > hide #!24 models |
| 27637 | | |
| 27638 | | > close #24 |
| 27639 | | |
| 27640 | | > close #25 |
| 27641 | | |
| 27642 | | > close #26-31,33-35,38-43,45-47,50-55,57-59#32,36-37,44,48-49,56,60-61 |
| 27643 | | |
| 27644 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 27645 | | > dataset/Chimera sessions/20240212_leaf_fitting_v1.cxs" |
| 27646 | | |
| 27647 | | > show #!1 models |
| 27648 | | |
| 27649 | | > show #3 models |
| 27650 | | |
| 27651 | | > show #4 models |
| 27652 | | |
| 27653 | | > show #5 models |
| 27654 | | |
| 27655 | | > show #6 models |
| 27656 | | |
| 27657 | | > show #7 models |
| 27658 | | |
| 27659 | | > show #8 models |
| 27660 | | |
| 27661 | | > show #!9 models |
| 27662 | | |
| 27663 | | > show #10 models |
| 27664 | | |
| 27665 | | > show #11 models |
| 27666 | | |
| 27667 | | > show #12 models |
| 27668 | | |
| 27669 | | > open "/Users/becca/Desktop/Postdoc/Structure files/COPI |
| 27670 | | > structures/3kn1_Golph3_xtal.cif" |
| 27671 | | |
| 27672 | | 3kn1_Golph3_xtal.cif title: |
| 27673 | | Crystal Structure of Golgi Phosphoprotein 3 N-term Truncation Variant [more |
| 27674 | | info...] |
| 27675 | | |
| 27676 | | Chain information for 3kn1_Golph3_xtal.cif #24 |
| 27677 | | --- |
| 27678 | | Chain | Description | UniProt |
| 27679 | | A | Golgi phosphoprotein 3 | GOLP3_HUMAN 52-298 |
| 27680 | | |
| 27681 | | Non-standard residues in 3kn1_Golph3_xtal.cif #24 |
| 27682 | | --- |
| 27683 | | SO4 — sulfate ion |
| 27684 | | |
| 27685 | | 3kn1_Golph3_xtal.cif mmCIF Assemblies |
| 27686 | | --- |
| 27687 | | 1| author_defined_assembly |
| 27688 | | 2| software_defined_assembly |
| 27689 | | |
| 27690 | | |
| 27691 | | > select add #24 |
| 27692 | | |
| 27693 | | 1934 atoms, 1950 bonds, 254 residues, 1 model selected |
| 27694 | | |
| 27695 | | > color #24 #d783ffff |
| 27696 | | |
| 27697 | | > color #24 #ae14ffff |
| 27698 | | |
| 27699 | | > view matrix models #24,1,0,0,76.862,0,1,0,319.67,0,0,1,20.57 |
| 27700 | | |
| 27701 | | > view matrix models #24,1,0,0,244.68,0,1,0,293.79,0,0,1,354.95 |
| 27702 | | |
| 27703 | | > view matrix models #24,1,0,0,319.16,0,1,0,281,0,0,1,332.02 |
| 27704 | | |
| 27705 | | > view matrix models #24,1,0,0,329.65,0,1,0,285.54,0,0,1,337.19 |
| 27706 | | |
| 27707 | | > hide #12 models |
| 27708 | | |
| 27709 | | > hide #10 models |
| 27710 | | |
| 27711 | | > hide #!9 models |
| 27712 | | |
| 27713 | | > hide #8 models |
| 27714 | | |
| 27715 | | > hide #7 models |
| 27716 | | |
| 27717 | | > hide #6 models |
| 27718 | | |
| 27719 | | > hide #5 models |
| 27720 | | |
| 27721 | | > hide #4 models |
| 27722 | | |
| 27723 | | > hide #3 models |
| 27724 | | |
| 27725 | | > view matrix models #24,1,0,0,323.59,0,1,0,290.3,0,0,1,325.47 |
| 27726 | | |
| 27727 | | > ui mousemode right "rotate selected models" |
| 27728 | | |
| 27729 | | > view matrix models |
| 27730 | | > #24,0.74281,-0.61084,-0.27408,346.77,-0.66844,-0.65348,-0.35518,361.6,0.03785,0.44703,-0.89372,259.81 |
| 27731 | | |
| 27732 | | > view matrix models |
| 27733 | | > #24,-0.055201,0.94985,-0.30778,252.19,-0.46271,-0.29749,-0.8351,333.91,-0.88479,0.096314,0.45593,295.74 |
| 27734 | | |
| 27735 | | > fitmap #24 inMap #1 |
| 27736 | | |
| 27737 | | Fit molecule 3kn1_Golph3_xtal.cif (#24) to map postprocess_20231221.mrc (#1) |
| 27738 | | using 1934 atoms |
| 27739 | | average map value = 0.00325, steps = 76 |
| 27740 | | shifted from previous position = 1.46 |
| 27741 | | rotated from previous position = 33.2 degrees |
| 27742 | | atoms outside contour = 1323, contour level = 0.0036898 |
| 27743 | | |
| 27744 | | Position of 3kn1_Golph3_xtal.cif (#24) relative to postprocess_20231221.mrc |
| 27745 | | (#1) coordinates: |
| 27746 | | Matrix rotation and translation |
| 27747 | | 0.23196046 0.95676416 -0.17548983 148.15479830 |
| 27748 | | 0.01108322 -0.18299837 -0.98305074 219.64194040 |
| 27749 | | -0.97266207 0.22608391 -0.05305242 161.81679309 |
| 27750 | | Axis 0.69904993 0.46087770 -0.54673662 |
| 27751 | | Axis point 0.00000000 -31.84998852 207.22130057 |
| 27752 | | Rotation angle (degrees) 120.13539920 |
| 27753 | | Shift along axis 116.32450764 |
| 27754 | | |
| 27755 | | |
| 27756 | | > select subtract #24 |
| 27757 | | |
| 27758 | | Nothing selected |
| 27759 | | |
| 27760 | | > hide #11 models |
| 27761 | | |
| 27762 | | > select add #24 |
| 27763 | | |
| 27764 | | 1934 atoms, 1950 bonds, 254 residues, 1 model selected |
| 27765 | | |
| 27766 | | > hide sel cartoons |
| 27767 | | |
| 27768 | | > hide sel atoms |
| 27769 | | |
| 27770 | | > show sel cartoons |
| 27771 | | |
| 27772 | | > select subtract #24 |
| 27773 | | |
| 27774 | | Nothing selected |
| 27775 | | |
| 27776 | | > hide #24 models |
| 27777 | | |
| 27778 | | > show #24 models |
| 27779 | | |
| 27780 | | > hide #24 models |
| 27781 | | |
| 27782 | | > open "/Users/becca/Desktop/Postdoc/Structure files/COPI |
| 27783 | | > structures/1pzd_Cow_Cterm_COPI_gamma.cif" |
| 27784 | | |
| 27785 | | 1pzd_Cow_Cterm_COPI_gamma.cif title: |
| 27786 | | Structural Identification of a conserved appendage domain in the carboxyl- |
| 27787 | | terminus of the COPI gamma-subunit. [more info...] |
| 27788 | | |
| 27789 | | Chain information for 1pzd_Cow_Cterm_COPI_gamma.cif #25 |
| 27790 | | --- |
| 27791 | | Chain | Description | UniProt |
| 27792 | | A | Coatomer gamma subunit | COPG_BOVIN 555-874 |
| 27793 | | |
| 27794 | | Non-standard residues in 1pzd_Cow_Cterm_COPI_gamma.cif #25 |
| 27795 | | --- |
| 27796 | | SO4 — sulfate ion |
| 27797 | | |
| 27798 | | |
| 27799 | | > color #25 #25ff00ff |
| 27800 | | |
| 27801 | | > select add #25 |
| 27802 | | |
| 27803 | | 2270 atoms, 2156 bonds, 426 residues, 1 model selected |
| 27804 | | |
| 27805 | | > view matrix models |
| 27806 | | > #25,0.99785,0.051021,-0.041055,-0.040446,-0.050714,0.99868,0.008493,-0.87771,0.041434,-0.0063927,0.99912,0.71759 |
| 27807 | | |
| 27808 | | > show #!9 models |
| 27809 | | |
| 27810 | | > ui mousemode right "translate selected models" |
| 27811 | | |
| 27812 | | > view matrix models |
| 27813 | | > #25,0.99785,0.051021,-0.041055,268.32,-0.050714,0.99868,0.008493,68.422,0.041434,-0.0063927,0.99912,-94.739 |
| 27814 | | |
| 27815 | | > view matrix models |
| 27816 | | > #25,0.99785,0.051021,-0.041055,443.58,-0.050714,0.99868,0.008493,42.599,0.041434,-0.0063927,0.99912,275.15 |
| 27817 | | |
| 27818 | | > view matrix models |
| 27819 | | > #25,0.99785,0.051021,-0.041055,342.71,-0.050714,0.99868,0.008493,278.54,0.041434,-0.0063927,0.99912,101.4 |
| 27820 | | |
| 27821 | | > view matrix models |
| 27822 | | > #25,0.99785,0.051021,-0.041055,306.81,-0.050714,0.99868,0.008493,413.82,0.041434,-0.0063927,0.99912,395.66 |
| 27823 | | |
| 27824 | | > view matrix models |
| 27825 | | > #25,0.99785,0.051021,-0.041055,370.4,-0.050714,0.99868,0.008493,389.86,0.041434,-0.0063927,0.99912,396.35 |
| 27826 | | |
| 27827 | | > view matrix models |
| 27828 | | > #25,0.99785,0.051021,-0.041055,369.55,-0.050714,0.99868,0.008493,392.01,0.041434,-0.0063927,0.99912,392.17 |
| 27829 | | |
| 27830 | | > ui mousemode right "rotate selected models" |
| 27831 | | |
| 27832 | | > view matrix models |
| 27833 | | > #25,0.48233,-0.84618,0.22658,354.09,-0.57775,-0.50171,-0.64381,358.99,0.65845,0.17963,-0.73087,384.48 |
| 27834 | | |
| 27835 | | > select subtract #25 |
| 27836 | | |
| 27837 | | Nothing selected |
| 27838 | | |
| 27839 | | > select add #25 |
| 27840 | | |
| 27841 | | 2270 atoms, 2156 bonds, 426 residues, 1 model selected |
| 27842 | | |
| 27843 | | > view matrix models |
| 27844 | | > #25,0.35653,-0.92737,0.11347,349.48,-0.80502,-0.36657,-0.46644,358.18,0.47416,0.074953,-0.87724,378.11 |
| 27845 | | |
| 27846 | | > ui mousemode right "translate selected models" |
| 27847 | | |
| 27848 | | > view matrix models |
| 27849 | | > #25,0.35653,-0.92737,0.11347,390.87,-0.80502,-0.36657,-0.46644,411.96,0.47416,0.074953,-0.87724,372.42 |
| 27850 | | |
| 27851 | | > ui mousemode right "rotate selected models" |
| 27852 | | |
| 27853 | | > view matrix models |
| 27854 | | > #25,0.56564,-0.65159,-0.50544,389.97,-0.41843,0.30138,-0.85679,421.17,0.71061,0.69613,-0.10218,392.67 |
| 27855 | | |
| 27856 | | > view matrix models |
| 27857 | | > #25,-0.53046,0.19734,0.82442,393.85,-0.21141,0.911,-0.3541,437.38,-0.82092,-0.36212,-0.44153,348.7 |
| 27858 | | |
| 27859 | | > ui mousemode right "translate selected models" |
| 27860 | | |
| 27861 | | > view matrix models |
| 27862 | | > #25,-0.53046,0.19734,0.82442,363.98,-0.21141,0.911,-0.3541,405.84,-0.82092,-0.36212,-0.44153,329.07 |
| 27863 | | |
| 27864 | | > ui mousemode right "rotate selected models" |
| 27865 | | |
| 27866 | | > view matrix models |
| 27867 | | > #25,0.75487,-0.6524,0.067339,370.77,0.24711,0.1878,-0.95061,400.07,0.60754,0.73423,0.30298,376.45 |
| 27868 | | |
| 27869 | | > ui mousemode right "translate selected models" |
| 27870 | | |
| 27871 | | > view matrix models |
| 27872 | | > #25,0.75487,-0.6524,0.067339,356.56,0.24711,0.1878,-0.95061,383.71,0.60754,0.73423,0.30298,398.36 |
| 27873 | | |
| 27874 | | > view matrix models |
| 27875 | | > #25,0.75487,-0.6524,0.067339,359.81,0.24711,0.1878,-0.95061,386.47,0.60754,0.73423,0.30298,399.6 |
| 27876 | | |
| 27877 | | > view matrix models |
| 27878 | | > #25,0.75487,-0.6524,0.067339,358.31,0.24711,0.1878,-0.95061,385.62,0.60754,0.73423,0.30298,399.28 |
| 27879 | | |
| 27880 | | > select subtract #25 |
| 27881 | | |
| 27882 | | Nothing selected |
| 27883 | | |
| 27884 | | > select add #25 |
| 27885 | | |
| 27886 | | 2270 atoms, 2156 bonds, 426 residues, 1 model selected |
| 27887 | | |
| 27888 | | > view matrix models |
| 27889 | | > #25,0.75487,-0.6524,0.067339,361.35,0.24711,0.1878,-0.95061,389.45,0.60754,0.73423,0.30298,396.81 |
| 27890 | | |
| 27891 | | > view matrix models |
| 27892 | | > #25,0.75487,-0.6524,0.067339,360.11,0.24711,0.1878,-0.95061,390.36,0.60754,0.73423,0.30298,397.06 |
| 27893 | | |
| 27894 | | > view matrix models |
| 27895 | | > #25,0.75487,-0.6524,0.067339,359.34,0.24711,0.1878,-0.95061,388.11,0.60754,0.73423,0.30298,396.07 |
| 27896 | | |
| 27897 | | > select subtract #25 |
| 27898 | | |
| 27899 | | Nothing selected |
| 27900 | | |
| 27901 | | > hide #25 models |
| 27902 | | |
| 27903 | | > open "/Users/becca/Desktop/Postdoc/Structure files/COPI |
| 27904 | | > structures/1r4x_human_gammaCOPI_appendage.cif" |
| 27905 | | |
| 27906 | | Summary of feedback from opening /Users/becca/Desktop/Postdoc/Structure |
| 27907 | | files/COPI structures/1r4x_human_gammaCOPI_appendage.cif |
| 27908 | | --- |
| 27909 | | notes | Fetching CCD CAS from https://files.wwpdb.org/pub/pdb/refdata/chem_comp/S/CAS/CAS.cif |
| 27910 | | Fetching CCD MG from |
| 27911 | | https://files.wwpdb.org/pub/pdb/refdata/chem_comp/G/MG/MG.cif |
| 27912 | | |
| 27913 | | 1r4x_human_gammaCOPI_appendage.cif title: |
| 27914 | | Crystal Structure Analys of the Gamma-COPI Appendage domain [more info...] |
| 27915 | | |
| 27916 | | Chain information for 1r4x_human_gammaCOPI_appendage.cif #26 |
| 27917 | | --- |
| 27918 | | Chain | Description | UniProt |
| 27919 | | A | Coatomer gamma subunit | COPG_HUMAN 608-874 |
| 27920 | | |
| 27921 | | Non-standard residues in 1r4x_human_gammaCOPI_appendage.cif #26 |
| 27922 | | --- |
| 27923 | | MG — magnesium ion |
| 27924 | | |
| 27925 | | |
| 27926 | | > select add #26 |
| 27927 | | |
| 27928 | | 2431 atoms, 2223 bonds, 6 pseudobonds, 529 residues, 2 models selected |
| 27929 | | |
| 27930 | | > view matrix models #26,1,0,0,-212.89,0,1,0,226.41,0,0,1,231.42 |
| 27931 | | |
| 27932 | | > view matrix models #26,1,0,0,256.86,0,1,0,340.17,0,0,1,111.16 |
| 27933 | | |
| 27934 | | > view matrix models #26,1,0,0,259.06,0,1,0,226.87,0,0,1,291.2 |
| 27935 | | |
| 27936 | | > view matrix models #26,1,0,0,335.89,0,1,0,395.85,0,0,1,373.68 |
| 27937 | | |
| 27938 | | > view matrix models #26,1,0,0,334.68,0,1,0,358.65,0,0,1,373.47 |
| 27939 | | |
| 27940 | | > ui mousemode right "rotate selected models" |
| 27941 | | |
| 27942 | | > view matrix models |
| 27943 | | > #26,0.90568,0.26692,0.32937,328.71,0.27791,0.21291,-0.93671,376.1,-0.32016,0.93991,0.11865,363.54 |
| 27944 | | |
| 27945 | | > view matrix models |
| 27946 | | > #26,0.93043,0.12952,0.34283,331.25,0.3157,0.19182,-0.92927,375.77,-0.18612,0.97285,0.13758,359.97 |
| 27947 | | |
| 27948 | | > ui mousemode right "translate selected models" |
| 27949 | | |
| 27950 | | > view matrix models |
| 27951 | | > #26,0.93043,0.12952,0.34283,324.67,0.3157,0.19182,-0.92927,388.63,-0.18612,0.97285,0.13758,359.76 |
| 27952 | | |
| 27953 | | > select subtract #26 |
| 27954 | | |
| 27955 | | Nothing selected |
| 27956 | | |
| 27957 | | > ui mousemode right "rotate selected models" |
| 27958 | | |
| 27959 | | > select add #26 |
| 27960 | | |
| 27961 | | 2431 atoms, 2223 bonds, 6 pseudobonds, 529 residues, 2 models selected |
| 27962 | | |
| 27963 | | > view matrix models |
| 27964 | | > #26,0.60771,0.76591,0.20992,317.51,-0.018932,0.27822,-0.96033,393.63,-0.79393,0.57963,0.18358,380.77 |
| 27965 | | |
| 27966 | | > view matrix models |
| 27967 | | > #26,0.40779,0.88038,0.24214,318.79,-0.10206,0.30748,-0.94607,394.58,-0.90735,0.36108,0.21524,387.86 |
| 27968 | | |
| 27969 | | > ui mousemode right "translate selected models" |
| 27970 | | |
| 27971 | | > view matrix models |
| 27972 | | > #26,0.40779,0.88038,0.24214,317.48,-0.10206,0.30748,-0.94607,393.41,-0.90735,0.36108,0.21524,387.64 |
| 27973 | | |
| 27974 | | > ui mousemode right "rotate selected models" |
| 27975 | | |
| 27976 | | > view matrix models |
| 27977 | | > #26,0.23238,0.91777,0.32203,319.75,-0.075931,0.3472,-0.93471,391.91,-0.96966,0.19276,0.15037,393.08 |
| 27978 | | |
| 27979 | | > ui mousemode right "translate selected models" |
| 27980 | | |
| 27981 | | > view matrix models |
| 27982 | | > #26,0.23238,0.91777,0.32203,318.06,-0.075931,0.3472,-0.93471,391.25,-0.96966,0.19276,0.15037,393.06 |
| 27983 | | |
| 27984 | | > view matrix models |
| 27985 | | > #26,0.23238,0.91777,0.32203,320.02,-0.075931,0.3472,-0.93471,390.45,-0.96966,0.19276,0.15037,392.61 |
| 27986 | | |
| 27987 | | > ui mousemode right "rotate selected models" |
| 27988 | | |
| 27989 | | > view matrix models |
| 27990 | | > #26,0.18279,0.84636,0.50026,321.66,-0.36681,0.5308,-0.76401,391.24,-0.91216,-0.043845,0.40748,395.38 |
| 27991 | | |
| 27992 | | > ui mousemode right "translate selected models" |
| 27993 | | |
| 27994 | | > view matrix models |
| 27995 | | > #26,0.18279,0.84636,0.50026,320.13,-0.36681,0.5308,-0.76401,391.23,-0.91216,-0.043845,0.40748,395.54 |
| 27996 | | |
| 27997 | | > view matrix models |
| 27998 | | > #26,0.18279,0.84636,0.50026,319.95,-0.36681,0.5308,-0.76401,390.34,-0.91216,-0.043845,0.40748,396.46 |
| 27999 | | |
| 28000 | | > ui mousemode right "rotate selected models" |
| 28001 | | |
| 28002 | | > view matrix models |
| 28003 | | > #26,0.39112,0.85498,0.34062,316.41,-0.13922,0.42081,-0.8964,388.95,-0.90975,0.30318,0.28362,389.22 |
| 28004 | | |
| 28005 | | > view matrix models |
| 28006 | | > #26,0.33989,0.86733,0.36362,317.05,-0.088513,0.41442,-0.90577,388.12,-0.93629,0.27568,0.21763,390.75 |
| 28007 | | |
| 28008 | | > view matrix models |
| 28009 | | > #26,0.33005,0.86588,0.37592,317.21,-0.14277,0.43944,-0.88685,388.54,-0.93311,0.23903,0.26866,391.24 |
| 28010 | | |
| 28011 | | > select subtract #26 |
| 28012 | | |
| 28013 | | Nothing selected |
| 28014 | | |
| 28015 | | > color #26 #39ff00ff |
| 28016 | | |
| 28017 | | > hide #!26 models |
| 28018 | | |
| 28019 | | > open "/Users/becca/Desktop/Postdoc/Structure files/COPI |
| 28020 | | > structures/2hf6_human_zetaCOPI_NMR.cif" |
| 28021 | | |
| 28022 | | 2hf6_human_zetaCOPI_NMR.cif title: |
| 28023 | | Solution structure of human zeta-COP [more info...] |
| 28024 | | |
| 28025 | | Chain information for 2hf6_human_zetaCOPI_NMR.cif |
| 28026 | | --- |
| 28027 | | Chain | Description | UniProt |
| 28028 | | 27.1/A 27.2/A 27.3/A 27.4/A 27.5/A 27.6/A 27.7/A 27.8/A 27.9/A 27.10/A 27.11/A 27.12/A 27.13/A 27.14/A 27.15/A 27.16/A 27.17/A 27.18/A 27.19/A 27.20/A | Coatomer subunit zeta-1 | COPZ1_HUMAN 1-149 |
| 28029 | | |
| 28030 | | |
| 28031 | | > select add #27 |
| 28032 | | |
| 28033 | | 48140 atoms, 48500 bonds, 2980 residues, 21 models selected |
| 28034 | | |
| 28035 | | > ui mousemode right "translate selected models" |
| 28036 | | |
| 28037 | | > view matrix models #27,1,0,0,307.78,0,1,0,153.43,0,0,1,-18.14 |
| 28038 | | |
| 28039 | | > view matrix models #27,1,0,0,441.62,0,1,0,436.79,0,0,1,179.77 |
| 28040 | | |
| 28041 | | > view matrix models #27,1,0,0,395.34,0,1,0,287,0,0,1,282.89 |
| 28042 | | |
| 28043 | | > select subtract #27 |
| 28044 | | |
| 28045 | | Nothing selected |
| 28046 | | |
| 28047 | | > color #27 #fffb00ff models |
| 28048 | | |
| 28049 | | > hide #!9 models |
| 28050 | | |
| 28051 | | > show #10 models |
| 28052 | | |
| 28053 | | > select add #10 |
| 28054 | | |
| 28055 | | 1420 atoms, 1441 bonds, 177 residues, 1 model selected |
| 28056 | | |
| 28057 | | > select add #27 |
| 28058 | | |
| 28059 | | 49560 atoms, 49941 bonds, 3157 residues, 22 models selected |
| 28060 | | |
| 28061 | | > hide sel atoms |
| 28062 | | |
| 28063 | | > select subtract #27 |
| 28064 | | |
| 28065 | | 1420 atoms, 1441 bonds, 177 residues, 1 model selected |
| 28066 | | |
| 28067 | | > select subtract #10 |
| 28068 | | |
| 28069 | | Nothing selected |
| 28070 | | |
| 28071 | | > select add #27 |
| 28072 | | |
| 28073 | | 48140 atoms, 48500 bonds, 2980 residues, 21 models selected |
| 28074 | | |
| 28075 | | > hide sel atoms |
| 28076 | | |
| 28077 | | [Repeated 1 time(s)] |
| 28078 | | |
| 28079 | | > show sel atoms |
| 28080 | | |
| 28081 | | > hide sel atoms |
| 28082 | | |
| 28083 | | > hide sel cartoons |
| 28084 | | |
| 28085 | | > show sel cartoons |
| 28086 | | |
| 28087 | | > select subtract #27 |
| 28088 | | |
| 28089 | | Nothing selected |
| 28090 | | |
| 28091 | | > hide #!27 models |
| 28092 | | |
| 28093 | | > hide #10 models |
| 28094 | | |
| 28095 | | > show #11 models |
| 28096 | | |
| 28097 | | > show #24 models |
| 28098 | | |
| 28099 | | > volume #1 level 0.003379 |
| 28100 | | |
| 28101 | | [Repeated 1 time(s)] |
| 28102 | | |
| 28103 | | > hide #11 models |
| 28104 | | |
| 28105 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 28106 | | > dataset/Chimera sessions/20240212_leaf_fitting_v2.cxs" |
| 28107 | | |
| 28108 | | ——— End of log from Mon Feb 12 10:40:16 2024 ——— |
| 28109 | | |
| 28110 | | opened ChimeraX session |
| 28111 | | |
| 28112 | | > hide #24 models |
| 28113 | | |
| 28114 | | > show #24 models |
| 28115 | | |
| 28116 | | > hide #24 models |
| 28117 | | |
| 28118 | | > show #25 models |
| 28119 | | |
| 28120 | | > hide #25 models |
| 28121 | | |
| 28122 | | > close #26 |
| 28123 | | |
| 28124 | | > close #27 |
| 28125 | | |
| 28126 | | > hide #!1 models |
| 28127 | | |
| 28128 | | > show #!1 models |
| 28129 | | |
| 28130 | | > show #3 models |
| 28131 | | |
| 28132 | | > hide #3 models |
| 28133 | | |
| 28134 | | > show #4 models |
| 28135 | | |
| 28136 | | > hide #4 models |
| 28137 | | |
| 28138 | | > show #6 models |
| 28139 | | |
| 28140 | | > show #5 models |
| 28141 | | |
| 28142 | | > hide #6 models |
| 28143 | | |
| 28144 | | > hide #5 models |
| 28145 | | |
| 28146 | | > show #7 models |
| 28147 | | |
| 28148 | | > hide #7 models |
| 28149 | | |
| 28150 | | > show #7 models |
| 28151 | | |
| 28152 | | > hide #7 models |
| 28153 | | |
| 28154 | | > show #24 models |
| 28155 | | |
| 28156 | | > hide #24 models |
| 28157 | | |
| 28158 | | > close #25 |
| 28159 | | |
| 28160 | | > show #24 models |
| 28161 | | |
| 28162 | | > hide #24 models |
| 28163 | | |
| 28164 | | > show #24 models |
| 28165 | | |
| 28166 | | > hide #24 models |
| 28167 | | |
| 28168 | | > open "/Users/becca/Desktop/Postdoc/Structure files/COPI |
| 28169 | | > structures/5nzr_COPI_coat_leaf_2017.cif" |
| 28170 | | |
| 28171 | | 5nzr_COPI_coat_leaf_2017.cif title: |
| 28172 | | The structure of the COPI coat leaf [more info...] |
| 28173 | | |
| 28174 | | Chain information for 5nzr_COPI_coat_leaf_2017.cif #25 |
| 28175 | | --- |
| 28176 | | Chain | Description | UniProt |
| 28177 | | A | Coatomer subunit alpha | COPA_MOUSE 1-1224 |
| 28178 | | B | Coatomer subunit beta | COPB_MOUSE 16-968 |
| 28179 | | C | Coatomer subunit beta' | COPB2_MOUSE 1-905 |
| 28180 | | D | Coatomer subunit delta | COPD_MOUSE 1-511 |
| 28181 | | F M R | ADP-ribosylation factor 1 | ARF1_YEAST 1-181 |
| 28182 | | G K | Coatomer subunit gamma-1 | COPG1_MOUSE 1-874 |
| 28183 | | L Z | Coatomer subunit zeta-1 | COPZ1_MOUSE 1-177 |
| 28184 | | |
| 28185 | | |
| 28186 | | > hide #!25 models |
| 28187 | | |
| 28188 | | > show #!25 models |
| 28189 | | |
| 28190 | | > hide #!25 atoms |
| 28191 | | |
| 28192 | | > show #!25 cartoons |
| 28193 | | |
| 28194 | | > select add #25 |
| 28195 | | |
| 28196 | | 18970 atoms, 18952 bonds, 7 pseudobonds, 4746 residues, 2 models selected |
| 28197 | | |
| 28198 | | > ui mousemode right "translate selected models" |
| 28199 | | |
| 28200 | | > view matrix models #25,1,0,0,172.93,0,1,0,-26.507,0,0,1,206.31 |
| 28201 | | |
| 28202 | | > view matrix models #25,1,0,0,179.54,0,1,0,116.98,0,0,1,131.95 |
| 28203 | | |
| 28204 | | > view matrix models #25,1,0,0,244.71,0,1,0,166.5,0,0,1,128.83 |
| 28205 | | |
| 28206 | | > ui mousemode right "rotate selected models" |
| 28207 | | |
| 28208 | | > view matrix models |
| 28209 | | > #25,0.90934,0.39096,0.14229,191.9,0.36842,-0.91558,0.16119,334.4,0.1933,-0.094151,-0.97661,347.05 |
| 28210 | | |
| 28211 | | > view matrix models |
| 28212 | | > #25,0.49924,0.4639,0.73182,160.19,0.54167,-0.82631,0.15427,305.6,0.67628,0.31938,-0.66381,208.92 |
| 28213 | | |
| 28214 | | > ui mousemode right "translate selected models" |
| 28215 | | |
| 28216 | | > view matrix models |
| 28217 | | > #25,0.49924,0.4639,0.73182,183.77,0.54167,-0.82631,0.15427,316.9,0.67628,0.31938,-0.66381,272.8 |
| 28218 | | |
| 28219 | | > view matrix models |
| 28220 | | > #25,0.49924,0.4639,0.73182,129.3,0.54167,-0.82631,0.15427,311.31,0.67628,0.31938,-0.66381,282.67 |
| 28221 | | |
| 28222 | | > ui mousemode right "rotate selected models" |
| 28223 | | |
| 28224 | | > view matrix models |
| 28225 | | > #25,0.96042,-0.17233,-0.21885,263.85,-0.20654,-0.96773,-0.14434,444.68,-0.18692,0.18383,-0.96502,428.26 |
| 28226 | | |
| 28227 | | > ui tool show "Fit in Map" |
| 28228 | | |
| 28229 | | > fitmap #25 inMap #1 |
| 28230 | | |
| 28231 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif (#25) to map |
| 28232 | | postprocess_20231221.mrc (#1) using 18970 atoms |
| 28233 | | average map value = 0.002473, steps = 108 |
| 28234 | | shifted from previous position = 9.77 |
| 28235 | | rotated from previous position = 8.8 degrees |
| 28236 | | atoms outside contour = 16052, contour level = 0.0033794 |
| 28237 | | |
| 28238 | | Position of 5nzr_COPI_coat_leaf_2017.cif (#25) relative to |
| 28239 | | postprocess_20231221.mrc (#1) coordinates: |
| 28240 | | Matrix rotation and translation |
| 28241 | | 0.98864984 -0.04299359 -0.14395503 131.62784376 |
| 28242 | | -0.07158428 -0.97722521 -0.19976632 331.34054902 |
| 28243 | | -0.13208781 0.20780386 -0.96921121 308.56082393 |
| 28244 | | Axis 0.99712807 -0.02903337 -0.06994766 |
| 28245 | | Axis point 0.00000000 151.24482933 176.20665529 |
| 28246 | | Rotation angle (degrees) 168.20725919 |
| 28247 | | Shift along axis 100.04677794 |
| 28248 | | |
| 28249 | | |
| 28250 | | > view matrix models |
| 28251 | | > #25,-0.025335,0.99704,0.072538,207.04,0.95599,0.04538,-0.28986,219.77,-0.29229,0.062003,-0.95432,454.07 |
| 28252 | | |
| 28253 | | > fitmap #25 inMap #1 |
| 28254 | | |
| 28255 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif (#25) to map |
| 28256 | | postprocess_20231221.mrc (#1) using 18970 atoms |
| 28257 | | average map value = 0.002418, steps = 84 |
| 28258 | | shifted from previous position = 12 |
| 28259 | | rotated from previous position = 4.08 degrees |
| 28260 | | atoms outside contour = 16464, contour level = 0.0033794 |
| 28261 | | |
| 28262 | | Position of 5nzr_COPI_coat_leaf_2017.cif (#25) relative to |
| 28263 | | postprocess_20231221.mrc (#1) coordinates: |
| 28264 | | Matrix rotation and translation |
| 28265 | | -0.06293060 0.99182167 0.11103830 99.85964341 |
| 28266 | | 0.96516350 0.08879327 -0.24612022 105.71410249 |
| 28267 | | -0.25396683 0.09168162 -0.96285790 328.58360677 |
| 28268 | | Axis 0.67825476 0.73287482 -0.05352555 |
| 28269 | | Axis point 29.96063731 0.00000000 167.00415032 |
| 28270 | | Rotation angle (degrees) 165.58030383 |
| 28271 | | Shift along axis 127.61786286 |
| 28272 | | |
| 28273 | | |
| 28274 | | > select subtract #25 |
| 28275 | | |
| 28276 | | Nothing selected |
| 28277 | | |
| 28278 | | > select #25/F |
| 28279 | | |
| 28280 | | 635 atoms, 634 bonds, 159 residues, 1 model selected |
| 28281 | | |
| 28282 | | > color sel hot pink |
| 28283 | | |
| 28284 | | > select #25/M |
| 28285 | | |
| 28286 | | 635 atoms, 634 bonds, 159 residues, 1 model selected |
| 28287 | | |
| 28288 | | > color sel hot pink |
| 28289 | | |
| 28290 | | > select #25/R |
| 28291 | | |
| 28292 | | 635 atoms, 634 bonds, 159 residues, 1 model selected |
| 28293 | | |
| 28294 | | > color sel hot pink |
| 28295 | | |
| 28296 | | > select #25/A |
| 28297 | | |
| 28298 | | 3251 atoms, 3250 bonds, 813 residues, 1 model selected |
| 28299 | | |
| 28300 | | > color sel blue |
| 28301 | | |
| 28302 | | > select #25/B |
| 28303 | | |
| 28304 | | 3198 atoms, 3193 bonds, 4 pseudobonds, 800 residues, 2 models selected |
| 28305 | | |
| 28306 | | > color sel dark green |
| 28307 | | |
| 28308 | | > select #25/C |
| 28309 | | |
| 28310 | | 3371 atoms, 3370 bonds, 843 residues, 1 model selected |
| 28311 | | |
| 28312 | | > color sel dark cyan |
| 28313 | | |
| 28314 | | > select #25/D |
| 28315 | | |
| 28316 | | 706 atoms, 704 bonds, 1 pseudobond, 177 residues, 2 models selected |
| 28317 | | |
| 28318 | | > color sel sienna |
| 28319 | | |
| 28320 | | > select #25/L |
| 28321 | | |
| 28322 | | 555 atoms, 554 bonds, 139 residues, 1 model selected |
| 28323 | | |
| 28324 | | > color sel yellow |
| 28325 | | |
| 28326 | | > select #25/Z |
| 28327 | | |
| 28328 | | 555 atoms, 554 bonds, 139 residues, 1 model selected |
| 28329 | | |
| 28330 | | > color sel yellow |
| 28331 | | |
| 28332 | | > select add #25 |
| 28333 | | |
| 28334 | | 18970 atoms, 18952 bonds, 7 pseudobonds, 4746 residues, 2 models selected |
| 28335 | | |
| 28336 | | > select subtract #25 |
| 28337 | | |
| 28338 | | Nothing selected |
| 28339 | | |
| 28340 | | > select add #25 |
| 28341 | | |
| 28342 | | 18970 atoms, 18952 bonds, 7 pseudobonds, 4746 residues, 2 models selected |
| 28343 | | |
| 28344 | | > show #3 models |
| 28345 | | |
| 28346 | | > view matrix models |
| 28347 | | > #25,0.01455,-0.060029,-0.99809,456.44,0.66933,-0.74097,0.054323,313.78,-0.74282,-0.66884,0.029398,470.18 |
| 28348 | | |
| 28349 | | > select subtract #25 |
| 28350 | | |
| 28351 | | Nothing selected |
| 28352 | | |
| 28353 | | > select add #25 |
| 28354 | | |
| 28355 | | 18970 atoms, 18952 bonds, 7 pseudobonds, 4746 residues, 2 models selected |
| 28356 | | |
| 28357 | | > view matrix models |
| 28358 | | > #25,0.67758,0.73257,-0.065061,182,0.23949,-0.13614,0.96131,184.56,0.69537,-0.66694,-0.26769,346.41 |
| 28359 | | |
| 28360 | | > fitmap #25 inMap #1 |
| 28361 | | |
| 28362 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif (#25) to map |
| 28363 | | postprocess_20231221.mrc (#1) using 18970 atoms |
| 28364 | | average map value = 0.002096, steps = 188 |
| 28365 | | shifted from previous position = 3.5 |
| 28366 | | rotated from previous position = 9.88 degrees |
| 28367 | | atoms outside contour = 16648, contour level = 0.0033794 |
| 28368 | | |
| 28369 | | Position of 5nzr_COPI_coat_leaf_2017.cif (#25) relative to |
| 28370 | | postprocess_20231221.mrc (#1) coordinates: |
| 28371 | | Matrix rotation and translation |
| 28372 | | 0.67668396 0.73273835 -0.07206466 69.55834155 |
| 28373 | | 0.36327897 -0.24714017 0.89830402 75.35116448 |
| 28374 | | 0.64041174 -0.63404750 -0.43342422 254.15816540 |
| 28375 | | Axis -0.88585237 -0.41188259 -0.21358446 |
| 28376 | | Axis point 0.00000000 93.91308587 113.87349788 |
| 28377 | | Rotation angle (degrees) 120.12844703 |
| 28378 | | Shift along axis -146.93848782 |
| 28379 | | |
| 28380 | | |
| 28381 | | > ui mousemode right "translate selected models" |
| 28382 | | |
| 28383 | | > view matrix models |
| 28384 | | > #25,0.67568,0.73393,-0.069377,237.36,0.35858,-0.24497,0.90078,57.103,0.64411,-0.63352,-0.42869,411.75 |
| 28385 | | |
| 28386 | | > view matrix models |
| 28387 | | > #25,0.67568,0.73393,-0.069377,166.37,0.35858,-0.24497,0.90078,2.138,0.64411,-0.63352,-0.42869,474.72 |
| 28388 | | |
| 28389 | | > view matrix models |
| 28390 | | > #25,0.67568,0.73393,-0.069377,205.85,0.35858,-0.24497,0.90078,-26.501,0.64411,-0.63352,-0.42869,507.68 |
| 28391 | | |
| 28392 | | > ui mousemode right "rotate selected models" |
| 28393 | | |
| 28394 | | > view matrix models |
| 28395 | | > #25,0.25988,0.36598,-0.8936,390.27,-0.5621,0.80979,0.16818,34.201,0.78518,0.45858,0.41616,265.23 |
| 28396 | | |
| 28397 | | > select subtract #25 |
| 28398 | | |
| 28399 | | Nothing selected |
| 28400 | | |
| 28401 | | > select #25/D |
| 28402 | | |
| 28403 | | 706 atoms, 704 bonds, 1 pseudobond, 177 residues, 2 models selected |
| 28404 | | |
| 28405 | | > select #25/A |
| 28406 | | |
| 28407 | | 3251 atoms, 3250 bonds, 813 residues, 1 model selected |
| 28408 | | |
| 28409 | | > select #25/B |
| 28410 | | |
| 28411 | | 3198 atoms, 3193 bonds, 4 pseudobonds, 800 residues, 2 models selected |
| 28412 | | |
| 28413 | | > select #25/C |
| 28414 | | |
| 28415 | | 3371 atoms, 3370 bonds, 843 residues, 1 model selected |
| 28416 | | |
| 28417 | | > color sel cyan |
| 28418 | | |
| 28419 | | > select #25/D |
| 28420 | | |
| 28421 | | 706 atoms, 704 bonds, 1 pseudobond, 177 residues, 2 models selected |
| 28422 | | |
| 28423 | | > select #25/G |
| 28424 | | |
| 28425 | | 3190 atoms, 3188 bonds, 1 pseudobond, 798 residues, 2 models selected |
| 28426 | | |
| 28427 | | > color sel lime green |
| 28428 | | |
| 28429 | | > select #25/K |
| 28430 | | |
| 28431 | | 2239 atoms, 2237 bonds, 1 pseudobond, 560 residues, 2 models selected |
| 28432 | | |
| 28433 | | > color sel lime green |
| 28434 | | |
| 28435 | | > hide #3 models |
| 28436 | | |
| 28437 | | > show #3 models |
| 28438 | | |
| 28439 | | > select add #25 |
| 28440 | | |
| 28441 | | 18970 atoms, 18952 bonds, 7 pseudobonds, 4746 residues, 2 models selected |
| 28442 | | |
| 28443 | | > select subtract #25 |
| 28444 | | |
| 28445 | | Nothing selected |
| 28446 | | |
| 28447 | | > select add #25 |
| 28448 | | |
| 28449 | | 18970 atoms, 18952 bonds, 7 pseudobonds, 4746 residues, 2 models selected |
| 28450 | | |
| 28451 | | > view matrix models |
| 28452 | | > #25,0.28613,0.38156,-0.87894,383.85,-0.48279,0.84976,0.21173,15.732,0.82767,0.36376,0.42736,270.51 |
| 28453 | | |
| 28454 | | > ui mousemode right "translate selected models" |
| 28455 | | |
| 28456 | | > view matrix models |
| 28457 | | > #25,0.28613,0.38156,-0.87894,307.95,-0.48279,0.84976,0.21173,128.43,0.82767,0.36376,0.42736,63.058 |
| 28458 | | |
| 28459 | | > view matrix models |
| 28460 | | > #25,0.28613,0.38156,-0.87894,346.74,-0.48279,0.84976,0.21173,263.05,0.82767,0.36376,0.42736,171.48 |
| 28461 | | |
| 28462 | | > ui mousemode right "rotate selected models" |
| 28463 | | |
| 28464 | | > view matrix models |
| 28465 | | > #25,0.28084,0.80046,-0.52952,257.34,-0.67529,0.55685,0.48363,287.48,0.68199,0.22176,0.69693,173.16 |
| 28466 | | |
| 28467 | | > view matrix models |
| 28468 | | > #25,0.059471,0.97884,0.19578,176.74,-0.86514,-0.047299,0.49929,378.08,0.49799,-0.19907,0.84403,226.23 |
| 28469 | | |
| 28470 | | > view matrix models |
| 28471 | | > #25,-0.25415,0.43249,-0.86507,398.41,-0.83663,-0.54707,-0.027707,495.03,-0.48524,0.71671,0.50088,265.28 |
| 28472 | | |
| 28473 | | > hide #3 models |
| 28474 | | |
| 28475 | | > show #7 models |
| 28476 | | |
| 28477 | | > view matrix models |
| 28478 | | > #25,0.044164,0.83121,-0.5542,282.53,-0.87692,-0.2335,-0.4201,507.62,-0.4786,0.50455,0.7186,264.55 |
| 28479 | | |
| 28480 | | > view matrix models |
| 28481 | | > #25,-0.31708,0.78054,-0.53872,326.39,-0.88489,-0.44785,-0.12805,500.16,-0.34121,0.43611,0.8327,244.4 |
| 28482 | | |
| 28483 | | > fitmap #25 inMap #1 |
| 28484 | | |
| 28485 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif (#25) to map |
| 28486 | | postprocess_20231221.mrc (#1) using 18970 atoms |
| 28487 | | average map value = 0.004218, steps = 352 |
| 28488 | | shifted from previous position = 12.1 |
| 28489 | | rotated from previous position = 32.7 degrees |
| 28490 | | atoms outside contour = 9666, contour level = 0.0033794 |
| 28491 | | |
| 28492 | | Position of 5nzr_COPI_coat_leaf_2017.cif (#25) relative to |
| 28493 | | postprocess_20231221.mrc (#1) coordinates: |
| 28494 | | Matrix rotation and translation |
| 28495 | | -0.53574835 0.84388736 -0.02877183 165.88776143 |
| 28496 | | -0.84419525 -0.53602985 -0.00252343 370.77841388 |
| 28497 | | -0.01755205 0.02293712 0.99958281 112.96642618 |
| 28498 | | Axis 0.01508047 -0.00664556 -0.99986420 |
| 28499 | | Axis point 185.48326612 138.95820238 0.00000000 |
| 28500 | | Rotation angle (degrees) 122.41838510 |
| 28501 | | Shift along axis -112.91345026 |
| 28502 | | |
| 28503 | | |
| 28504 | | > hide #7 models |
| 28505 | | |
| 28506 | | > select subtract #25 |
| 28507 | | |
| 28508 | | Nothing selected |
| 28509 | | |
| 28510 | | > select #25/C |
| 28511 | | |
| 28512 | | 3371 atoms, 3370 bonds, 843 residues, 1 model selected |
| 28513 | | |
| 28514 | | > fitmap sel inMap #1 |
| 28515 | | |
| 28516 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif (#25) to map |
| 28517 | | postprocess_20231221.mrc (#1) using 3371 atoms |
| 28518 | | average map value = 0.004368, steps = 72 |
| 28519 | | shifted from previous position = 0.567 |
| 28520 | | rotated from previous position = 4.82 degrees |
| 28521 | | atoms outside contour = 1172, contour level = 0.0033794 |
| 28522 | | |
| 28523 | | Position of 5nzr_COPI_coat_leaf_2017.cif (#25) relative to |
| 28524 | | postprocess_20231221.mrc (#1) coordinates: |
| 28525 | | Matrix rotation and translation |
| 28526 | | -0.47520712 0.87648107 -0.07719527 158.57604863 |
| 28527 | | -0.87870795 -0.47726261 -0.00962971 369.82561667 |
| 28528 | | -0.04528268 0.06325599 0.99696948 112.94642006 |
| 28529 | | Axis 0.04148324 -0.01816320 -0.99897409 |
| 28530 | | Axis point 191.06280682 135.30791259 0.00000000 |
| 28531 | | Rotation angle (degrees) 118.53856222 |
| 28532 | | Shift along axis -112.96951683 |
| 28533 | | |
| 28534 | | |
| 28535 | | > fitmap sel inMap #1 |
| 28536 | | |
| 28537 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif (#25) to map |
| 28538 | | postprocess_20231221.mrc (#1) using 3371 atoms |
| 28539 | | average map value = 0.004368, steps = 48 |
| 28540 | | shifted from previous position = 0.058 |
| 28541 | | rotated from previous position = 0.0401 degrees |
| 28542 | | atoms outside contour = 1176, contour level = 0.0033794 |
| 28543 | | |
| 28544 | | Position of 5nzr_COPI_coat_leaf_2017.cif (#25) relative to |
| 28545 | | postprocess_20231221.mrc (#1) coordinates: |
| 28546 | | Matrix rotation and translation |
| 28547 | | -0.47544517 0.87640361 -0.07660664 158.52057680 |
| 28548 | | -0.87858084 -0.47749115 -0.00989406 369.90681967 |
| 28549 | | -0.04525018 0.06260104 0.99701229 112.97990255 |
| 28550 | | Axis 0.04126634 -0.01784902 -0.99898874 |
| 28551 | | Axis point 191.02675926 135.40435673 0.00000000 |
| 28552 | | Rotation angle (degrees) 118.55238261 |
| 28553 | | Shift along axis -112.92655935 |
| 28554 | | |
| 28555 | | |
| 28556 | | > select #25/A |
| 28557 | | |
| 28558 | | 3251 atoms, 3250 bonds, 813 residues, 1 model selected |
| 28559 | | |
| 28560 | | > fitmap sel inMap #1 |
| 28561 | | |
| 28562 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif (#25) to map |
| 28563 | | postprocess_20231221.mrc (#1) using 3251 atoms |
| 28564 | | average map value = 0.003303, steps = 64 |
| 28565 | | shifted from previous position = 5.19 |
| 28566 | | rotated from previous position = 4.65 degrees |
| 28567 | | atoms outside contour = 2052, contour level = 0.0033794 |
| 28568 | | |
| 28569 | | Position of 5nzr_COPI_coat_leaf_2017.cif (#25) relative to |
| 28570 | | postprocess_20231221.mrc (#1) coordinates: |
| 28571 | | Matrix rotation and translation |
| 28572 | | -0.51473956 0.84718223 -0.13162612 174.81436834 |
| 28573 | | -0.85624995 -0.51574917 0.02896220 363.08006962 |
| 28574 | | -0.04334980 0.12761285 0.99087625 110.56112471 |
| 28575 | | Axis 0.05773878 -0.05166684 -0.99699387 |
| 28576 | | Axis point 191.22843747 127.46029174 0.00000000 |
| 28577 | | Rotation angle (degrees) 121.31925569 |
| 28578 | | Shift along axis -118.89439414 |
| 28579 | | |
| 28580 | | |
| 28581 | | > select #25/C |
| 28582 | | |
| 28583 | | 3371 atoms, 3370 bonds, 843 residues, 1 model selected |
| 28584 | | |
| 28585 | | > fitmap sel inMap #1 |
| 28586 | | |
| 28587 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif (#25) to map |
| 28588 | | postprocess_20231221.mrc (#1) using 3371 atoms |
| 28589 | | average map value = 0.004368, steps = 76 |
| 28590 | | shifted from previous position = 5.71 |
| 28591 | | rotated from previous position = 4.63 degrees |
| 28592 | | atoms outside contour = 1172, contour level = 0.0033794 |
| 28593 | | |
| 28594 | | Position of 5nzr_COPI_coat_leaf_2017.cif (#25) relative to |
| 28595 | | postprocess_20231221.mrc (#1) coordinates: |
| 28596 | | Matrix rotation and translation |
| 28597 | | -0.47516299 0.87650032 -0.07724834 158.57912193 |
| 28598 | | -0.87873512 -0.47721455 -0.00953158 369.80308546 |
| 28599 | | -0.04521847 0.06335177 0.99696631 112.92997824 |
| 28600 | | Axis 0.04148076 -0.01822945 -0.99897299 |
| 28601 | | Axis point 191.06132364 135.28926761 0.00000000 |
| 28602 | | Rotation angle (degrees) 118.53565898 |
| 28603 | | Shift along axis -112.97732216 |
| 28604 | | |
| 28605 | | |
| 28606 | | > fitmap sel inMap #1 |
| 28607 | | |
| 28608 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif (#25) to map |
| 28609 | | postprocess_20231221.mrc (#1) using 3371 atoms |
| 28610 | | average map value = 0.004368, steps = 64 |
| 28611 | | shifted from previous position = 0.00374 |
| 28612 | | rotated from previous position = 0.00725 degrees |
| 28613 | | atoms outside contour = 1171, contour level = 0.0033794 |
| 28614 | | |
| 28615 | | Position of 5nzr_COPI_coat_leaf_2017.cif (#25) relative to |
| 28616 | | postprocess_20231221.mrc (#1) coordinates: |
| 28617 | | Matrix rotation and translation |
| 28618 | | -0.47511100 0.87651900 -0.07735611 158.58195988 |
| 28619 | | -0.87875891 -0.47716993 -0.00957243 369.80985864 |
| 28620 | | -0.04530242 0.06342940 0.99695757 112.93294602 |
| 28621 | | Axis 0.04154706 -0.01824251 -0.99897000 |
| 28622 | | Axis point 191.07470904 135.28593923 0.00000000 |
| 28623 | | Rotation angle (degrees) 118.53279373 |
| 28624 | | Shift along axis -112.97426862 |
| 28625 | | |
| 28626 | | |
| 28627 | | > select #25/K |
| 28628 | | |
| 28629 | | 2239 atoms, 2237 bonds, 1 pseudobond, 560 residues, 2 models selected |
| 28630 | | |
| 28631 | | > fitmap sel inMap #1 |
| 28632 | | |
| 28633 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif (#25) to map |
| 28634 | | postprocess_20231221.mrc (#1) using 2239 atoms |
| 28635 | | average map value = 0.005453, steps = 88 |
| 28636 | | shifted from previous position = 2.86 |
| 28637 | | rotated from previous position = 5.24 degrees |
| 28638 | | atoms outside contour = 1101, contour level = 0.0033794 |
| 28639 | | |
| 28640 | | Position of 5nzr_COPI_coat_leaf_2017.cif (#25) relative to |
| 28641 | | postprocess_20231221.mrc (#1) coordinates: |
| 28642 | | Matrix rotation and translation |
| 28643 | | -0.52861290 0.84867362 -0.01792962 162.26120912 |
| 28644 | | -0.84874757 -0.52807480 0.02765050 368.46631966 |
| 28645 | | 0.01399807 0.02983414 0.99945683 106.78996296 |
| 28646 | | Axis 0.00128621 -0.01880619 -0.99982232 |
| 28647 | | Axis point 182.93199093 138.12732719 0.00000000 |
| 28648 | | Rotation angle (degrees) 121.91195324 |
| 28649 | | Shift along axis -113.49173322 |
| 28650 | | |
| 28651 | | |
| 28652 | | > select #25/K |
| 28653 | | |
| 28654 | | 2239 atoms, 2237 bonds, 1 pseudobond, 560 residues, 2 models selected |
| 28655 | | |
| 28656 | | > select #25/G |
| 28657 | | |
| 28658 | | 3190 atoms, 3188 bonds, 1 pseudobond, 798 residues, 2 models selected |
| 28659 | | |
| 28660 | | > fitmap sel inMap #1 |
| 28661 | | |
| 28662 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif (#25) to map |
| 28663 | | postprocess_20231221.mrc (#1) using 3190 atoms |
| 28664 | | average map value = 0.005086, steps = 80 |
| 28665 | | shifted from previous position = 6.04 |
| 28666 | | rotated from previous position = 3.82 degrees |
| 28667 | | atoms outside contour = 1594, contour level = 0.0033794 |
| 28668 | | |
| 28669 | | Position of 5nzr_COPI_coat_leaf_2017.cif (#25) relative to |
| 28670 | | postprocess_20231221.mrc (#1) coordinates: |
| 28671 | | Matrix rotation and translation |
| 28672 | | -0.56555988 0.82461095 -0.01260167 168.08525898 |
| 28673 | | -0.82433303 -0.56569752 -0.02147934 374.09170490 |
| 28674 | | -0.02484084 -0.00175988 0.99968986 117.01268500 |
| 28675 | | Axis 0.01195766 0.00742169 -0.99990096 |
| 28676 | | Axis point 183.47113140 142.86489612 0.00000000 |
| 28677 | | Rotation angle (degrees) 124.45673518 |
| 28678 | | Shift along axis -112.21479764 |
| 28679 | | |
| 28680 | | |
| 28681 | | > select #25/F |
| 28682 | | |
| 28683 | | 635 atoms, 634 bonds, 159 residues, 1 model selected |
| 28684 | | |
| 28685 | | > fitmap sel inMap #1 |
| 28686 | | |
| 28687 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif (#25) to map |
| 28688 | | postprocess_20231221.mrc (#1) using 635 atoms |
| 28689 | | average map value = 0.002828, steps = 88 |
| 28690 | | shifted from previous position = 12.4 |
| 28691 | | rotated from previous position = 12 degrees |
| 28692 | | atoms outside contour = 508, contour level = 0.0033794 |
| 28693 | | |
| 28694 | | Position of 5nzr_COPI_coat_leaf_2017.cif (#25) relative to |
| 28695 | | postprocess_20231221.mrc (#1) coordinates: |
| 28696 | | Matrix rotation and translation |
| 28697 | | -0.39510325 0.91706351 -0.05373946 147.27708502 |
| 28698 | | -0.91853641 -0.39351912 0.03786221 369.07307876 |
| 28699 | | 0.01357455 0.06432113 0.99783692 104.46501204 |
| 28700 | | Axis 0.01440314 -0.03664296 -0.99922462 |
| 28701 | | Axis point 194.55872287 133.56188379 0.00000000 |
| 28702 | | Rotation angle (degrees) 113.29046977 |
| 28703 | | Shift along axis -115.78668960 |
| 28704 | | |
| 28705 | | |
| 28706 | | > select add #25 |
| 28707 | | |
| 28708 | | 18970 atoms, 18952 bonds, 7 pseudobonds, 4746 residues, 2 models selected |
| 28709 | | |
| 28710 | | > select subtract #25 |
| 28711 | | |
| 28712 | | Nothing selected |
| 28713 | | |
| 28714 | | > split #25 chains |
| 28715 | | |
| 28716 | | Split 5nzr_COPI_coat_leaf_2017.cif (#25) into 11 models |
| 28717 | | Chain information for 5nzr_COPI_coat_leaf_2017.cif A #25.1 |
| 28718 | | --- |
| 28719 | | Chain | Description |
| 28720 | | A | No description available |
| 28721 | | |
| 28722 | | Chain information for 5nzr_COPI_coat_leaf_2017.cif B #25.2 |
| 28723 | | --- |
| 28724 | | Chain | Description |
| 28725 | | B | No description available |
| 28726 | | |
| 28727 | | Chain information for 5nzr_COPI_coat_leaf_2017.cif C #25.3 |
| 28728 | | --- |
| 28729 | | Chain | Description |
| 28730 | | C | No description available |
| 28731 | | |
| 28732 | | Chain information for 5nzr_COPI_coat_leaf_2017.cif D #25.4 |
| 28733 | | --- |
| 28734 | | Chain | Description |
| 28735 | | D | No description available |
| 28736 | | |
| 28737 | | Chain information for 5nzr_COPI_coat_leaf_2017.cif F #25.5 |
| 28738 | | --- |
| 28739 | | Chain | Description |
| 28740 | | F | No description available |
| 28741 | | |
| 28742 | | Chain information for 5nzr_COPI_coat_leaf_2017.cif G #25.6 |
| 28743 | | --- |
| 28744 | | Chain | Description |
| 28745 | | G | No description available |
| 28746 | | |
| 28747 | | Chain information for 5nzr_COPI_coat_leaf_2017.cif K #25.7 |
| 28748 | | --- |
| 28749 | | Chain | Description |
| 28750 | | K | No description available |
| 28751 | | |
| 28752 | | Chain information for 5nzr_COPI_coat_leaf_2017.cif L #25.8 |
| 28753 | | --- |
| 28754 | | Chain | Description |
| 28755 | | L | No description available |
| 28756 | | |
| 28757 | | Chain information for 5nzr_COPI_coat_leaf_2017.cif M #25.9 |
| 28758 | | --- |
| 28759 | | Chain | Description |
| 28760 | | M | No description available |
| 28761 | | |
| 28762 | | Chain information for 5nzr_COPI_coat_leaf_2017.cif R #25.10 |
| 28763 | | --- |
| 28764 | | Chain | Description |
| 28765 | | R | No description available |
| 28766 | | |
| 28767 | | Chain information for 5nzr_COPI_coat_leaf_2017.cif Z #25.11 |
| 28768 | | --- |
| 28769 | | Chain | Description |
| 28770 | | Z | No description available |
| 28771 | | |
| 28772 | | |
| 28773 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 28774 | | > dataset/Chimera sessions/20240212_leaf_fitting_v3.cxs" |
| 28775 | | |
| 28776 | | > hide #!25 models |
| 28777 | | |
| 28778 | | > open "/Users/becca/Desktop/Postdoc/Structure files/COPI |
| 28779 | | > structures/3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif" |
| 28780 | | |
| 28781 | | Summary of feedback from opening /Users/becca/Desktop/Postdoc/Structure |
| 28782 | | files/COPI structures/3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif |
| 28783 | | --- |
| 28784 | | note | Fetching CCD GNP from https://files.wwpdb.org/pub/pdb/refdata/chem_comp/P/GNP/GNP.cif |
| 28785 | | |
| 28786 | | 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif title: |
| 28787 | | Crystal Structure of Arf1 Bound to the gamma/zeta-COP Core Complex [more |
| 28788 | | info...] |
| 28789 | | |
| 28790 | | Chain information for 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif #26 |
| 28791 | | --- |
| 28792 | | Chain | Description | UniProt |
| 28793 | | A D | ADP-ribosylation factor 1 | ARF1_YEAST 18-181 |
| 28794 | | B E | Coatomer subunit gamma | COPG_BOVIN 1-355 |
| 28795 | | C F | Coatomer subunit zeta-1 | COPZ1_BOVIN 1-153 |
| 28796 | | |
| 28797 | | Non-standard residues in 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif #26 |
| 28798 | | --- |
| 28799 | | GNP — phosphoaminophosphonic acid-guanylate ester |
| 28800 | | MG — magnesium ion |
| 28801 | | |
| 28802 | | 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif mmCIF Assemblies |
| 28803 | | --- |
| 28804 | | 1| software_defined_assembly |
| 28805 | | 2| software_defined_assembly |
| 28806 | | |
| 28807 | | |
| 28808 | | > hide #!26 models |
| 28809 | | |
| 28810 | | > show #!26 models |
| 28811 | | |
| 28812 | | > hide #!26 atoms |
| 28813 | | |
| 28814 | | > show #!26 cartoons |
| 28815 | | |
| 28816 | | > select add #26 |
| 28817 | | |
| 28818 | | 8970 atoms, 9117 bonds, 11 pseudobonds, 1126 residues, 3 models selected |
| 28819 | | |
| 28820 | | > view matrix models |
| 28821 | | > #26,0.5277,0.75349,-0.39216,69.779,-0.81002,0.58537,0.034737,-10.163,0.25573,0.29932,0.91924,16.02 |
| 28822 | | |
| 28823 | | > ui mousemode right "translate selected models" |
| 28824 | | |
| 28825 | | > view matrix models |
| 28826 | | > #26,0.5277,0.75349,-0.39216,490.52,-0.81002,0.58537,0.034737,254.15,0.25573,0.29932,0.91924,-22.305 |
| 28827 | | |
| 28828 | | > view matrix models |
| 28829 | | > #26,0.5277,0.75349,-0.39216,219.19,-0.81002,0.58537,0.034737,382.39,0.25573,0.29932,0.91924,134.56 |
| 28830 | | |
| 28831 | | > view matrix models |
| 28832 | | > #26,0.5277,0.75349,-0.39216,320.35,-0.81002,0.58537,0.034737,463.15,0.25573,0.29932,0.91924,332.64 |
| 28833 | | |
| 28834 | | > view matrix models |
| 28835 | | > #26,0.5277,0.75349,-0.39216,388.13,-0.81002,0.58537,0.034737,370.75,0.25573,0.29932,0.91924,351.92 |
| 28836 | | |
| 28837 | | > select subtract #26 |
| 28838 | | |
| 28839 | | Nothing selected |
| 28840 | | |
| 28841 | | > select #26/A |
| 28842 | | |
| 28843 | | 1306 atoms, 1331 bonds, 3 pseudobonds, 161 residues, 2 models selected |
| 28844 | | |
| 28845 | | > color sel hot pink |
| 28846 | | |
| 28847 | | > hide #!1 models |
| 28848 | | |
| 28849 | | > select #26/D |
| 28850 | | |
| 28851 | | 1306 atoms, 1331 bonds, 4 pseudobonds, 161 residues, 2 models selected |
| 28852 | | |
| 28853 | | > color sel hot pink |
| 28854 | | |
| 28855 | | > select #26/C |
| 28856 | | |
| 28857 | | 1128 atoms, 1146 bonds, 140 residues, 1 model selected |
| 28858 | | |
| 28859 | | > color sel yellow |
| 28860 | | |
| 28861 | | > select #26/F |
| 28862 | | |
| 28863 | | 1128 atoms, 1146 bonds, 140 residues, 1 model selected |
| 28864 | | |
| 28865 | | > color sel yellow |
| 28866 | | |
| 28867 | | > select #26/B |
| 28868 | | |
| 28869 | | 2069 atoms, 2100 bonds, 2 pseudobonds, 264 residues, 2 models selected |
| 28870 | | |
| 28871 | | > color sel lime green |
| 28872 | | |
| 28873 | | > select #26/E |
| 28874 | | |
| 28875 | | 2033 atoms, 2063 bonds, 2 pseudobonds, 260 residues, 2 models selected |
| 28876 | | |
| 28877 | | > color sel lime green |
| 28878 | | |
| 28879 | | > select add #26 |
| 28880 | | |
| 28881 | | 8970 atoms, 9117 bonds, 11 pseudobonds, 1126 residues, 3 models selected |
| 28882 | | |
| 28883 | | > select subtract #26 |
| 28884 | | |
| 28885 | | Nothing selected |
| 28886 | | |
| 28887 | | > show #!1 models |
| 28888 | | |
| 28889 | | > show #10 models |
| 28890 | | |
| 28891 | | > hide #!26 models |
| 28892 | | |
| 28893 | | > hide #10 models |
| 28894 | | |
| 28895 | | > show #10 models |
| 28896 | | |
| 28897 | | > show #!26 models |
| 28898 | | |
| 28899 | | > select add #26 |
| 28900 | | |
| 28901 | | 8970 atoms, 9117 bonds, 11 pseudobonds, 1126 residues, 3 models selected |
| 28902 | | |
| 28903 | | > view matrix models |
| 28904 | | > #26,0.5277,0.75349,-0.39216,405.68,-0.81002,0.58537,0.034737,423.29,0.25573,0.29932,0.91924,314.52 |
| 28905 | | |
| 28906 | | > view matrix models |
| 28907 | | > #26,0.5277,0.75349,-0.39216,390.94,-0.81002,0.58537,0.034737,414.92,0.25573,0.29932,0.91924,300.71 |
| 28908 | | |
| 28909 | | > view matrix models |
| 28910 | | > #26,0.5277,0.75349,-0.39216,387.65,-0.81002,0.58537,0.034737,411.98,0.25573,0.29932,0.91924,309.59 |
| 28911 | | |
| 28912 | | > split #26 chains |
| 28913 | | |
| 28914 | | Split 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif (#26) into 6 models |
| 28915 | | Chain information for 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A #26.1 |
| 28916 | | --- |
| 28917 | | Chain | Description |
| 28918 | | A | No description available |
| 28919 | | |
| 28920 | | Chain information for 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B #26.2 |
| 28921 | | --- |
| 28922 | | Chain | Description |
| 28923 | | B | No description available |
| 28924 | | |
| 28925 | | Chain information for 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C #26.3 |
| 28926 | | --- |
| 28927 | | Chain | Description |
| 28928 | | C | No description available |
| 28929 | | |
| 28930 | | Chain information for 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif D #26.4 |
| 28931 | | --- |
| 28932 | | Chain | Description |
| 28933 | | D | No description available |
| 28934 | | |
| 28935 | | Chain information for 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif E #26.5 |
| 28936 | | --- |
| 28937 | | Chain | Description |
| 28938 | | E | No description available |
| 28939 | | |
| 28940 | | Chain information for 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif F #26.6 |
| 28941 | | --- |
| 28942 | | Chain | Description |
| 28943 | | F | No description available |
| 28944 | | |
| 28945 | | |
| 28946 | | > hide #!26 models |
| 28947 | | |
| 28948 | | > show #!26 models |
| 28949 | | |
| 28950 | | > hide #!26.4 models |
| 28951 | | |
| 28952 | | > close #26.4 |
| 28953 | | |
| 28954 | | > close #26.5 |
| 28955 | | |
| 28956 | | > close #26.6 |
| 28957 | | |
| 28958 | | > select add #26.1 |
| 28959 | | |
| 28960 | | 1306 atoms, 1331 bonds, 3 pseudobonds, 161 residues, 2 models selected |
| 28961 | | |
| 28962 | | > select add #26.2 |
| 28963 | | |
| 28964 | | 3375 atoms, 3431 bonds, 5 pseudobonds, 425 residues, 4 models selected |
| 28965 | | |
| 28966 | | > select add #26.3 |
| 28967 | | |
| 28968 | | 4503 atoms, 4577 bonds, 5 pseudobonds, 565 residues, 5 models selected |
| 28969 | | |
| 28970 | | > view matrix models |
| 28971 | | > #26.1,0.5277,0.75349,-0.39216,426.69,-0.81002,0.58537,0.034737,412.79,0.25573,0.29932,0.91924,272.48,#26.2,0.5277,0.75349,-0.39216,426.69,-0.81002,0.58537,0.034737,412.79,0.25573,0.29932,0.91924,272.48,#26.3,0.5277,0.75349,-0.39216,426.69,-0.81002,0.58537,0.034737,412.79,0.25573,0.29932,0.91924,272.48 |
| 28972 | | |
| 28973 | | > hide #!1 models |
| 28974 | | |
| 28975 | | > view matrix models |
| 28976 | | > #26.1,0.5277,0.75349,-0.39216,424.99,-0.81002,0.58537,0.034737,407.1,0.25573,0.29932,0.91924,299.03,#26.2,0.5277,0.75349,-0.39216,424.99,-0.81002,0.58537,0.034737,407.1,0.25573,0.29932,0.91924,299.03,#26.3,0.5277,0.75349,-0.39216,424.99,-0.81002,0.58537,0.034737,407.1,0.25573,0.29932,0.91924,299.03 |
| 28977 | | |
| 28978 | | > ui mousemode right "rotate selected models" |
| 28979 | | |
| 28980 | | > view matrix models |
| 28981 | | > #26.1,0.97843,-0.20567,-0.019332,362.38,0.19832,0.9614,-0.19075,417.76,0.057819,0.1828,0.98145,293.01,#26.2,0.97843,-0.20567,-0.019332,362.38,0.19832,0.9614,-0.19075,417.76,0.057819,0.1828,0.98145,293.01,#26.3,0.97843,-0.20567,-0.019332,362.38,0.19832,0.9614,-0.19075,417.76,0.057819,0.1828,0.98145,293.01 |
| 28982 | | |
| 28983 | | > view matrix models |
| 28984 | | > #26.1,-0.96419,0.243,0.10625,412,-0.18031,-0.30681,-0.93454,368.07,-0.1945,-0.92023,0.33964,247.68,#26.2,-0.96419,0.243,0.10625,412,-0.18031,-0.30681,-0.93454,368.07,-0.1945,-0.92023,0.33964,247.68,#26.3,-0.96419,0.243,0.10625,412,-0.18031,-0.30681,-0.93454,368.07,-0.1945,-0.92023,0.33964,247.68 |
| 28985 | | |
| 28986 | | > view matrix models |
| 28987 | | > #26.1,-0.46491,-0.45586,-0.75898,382.96,0.84312,0.033663,-0.53667,363.96,0.2702,-0.88941,0.36869,240.04,#26.2,-0.46491,-0.45586,-0.75898,382.96,0.84312,0.033663,-0.53667,363.96,0.2702,-0.88941,0.36869,240.04,#26.3,-0.46491,-0.45586,-0.75898,382.96,0.84312,0.033663,-0.53667,363.96,0.2702,-0.88941,0.36869,240.04 |
| 28988 | | |
| 28989 | | > ui mousemode right "translate selected models" |
| 28990 | | |
| 28991 | | > view matrix models |
| 28992 | | > #26.1,-0.46491,-0.45586,-0.75898,317.7,0.84312,0.033663,-0.53667,369.45,0.2702,-0.88941,0.36869,225.13,#26.2,-0.46491,-0.45586,-0.75898,317.7,0.84312,0.033663,-0.53667,369.45,0.2702,-0.88941,0.36869,225.13,#26.3,-0.46491,-0.45586,-0.75898,317.7,0.84312,0.033663,-0.53667,369.45,0.2702,-0.88941,0.36869,225.13 |
| 28993 | | |
| 28994 | | > ui mousemode right "rotate selected models" |
| 28995 | | |
| 28996 | | > view matrix models |
| 28997 | | > #26.1,0.45164,0.34272,-0.82375,352.65,-0.58768,0.80897,0.01436,423.44,0.6713,0.47761,0.56678,293.68,#26.2,0.45164,0.34272,-0.82375,352.65,-0.58768,0.80897,0.01436,423.44,0.6713,0.47761,0.56678,293.68,#26.3,0.45164,0.34272,-0.82375,352.65,-0.58768,0.80897,0.01436,423.44,0.6713,0.47761,0.56678,293.68 |
| 28998 | | |
| 28999 | | > view matrix models |
| 29000 | | > #26.1,0.073239,0.58986,-0.80418,373.62,0.73413,-0.57767,-0.35686,331.44,-0.67505,-0.56423,-0.47534,273.5,#26.2,0.073239,0.58986,-0.80418,373.62,0.73413,-0.57767,-0.35686,331.44,-0.67505,-0.56423,-0.47534,273.5,#26.3,0.073239,0.58986,-0.80418,373.62,0.73413,-0.57767,-0.35686,331.44,-0.67505,-0.56423,-0.47534,273.5 |
| 29001 | | |
| 29002 | | > show #5 models |
| 29003 | | |
| 29004 | | > hide #5 models |
| 29005 | | |
| 29006 | | > show #6 models |
| 29007 | | |
| 29008 | | > show #!9 models |
| 29009 | | |
| 29010 | | > view matrix models |
| 29011 | | > #26.1,0.037974,0.8909,-0.4526,383.45,0.91974,-0.20824,-0.33273,349.88,-0.39068,-0.40364,-0.82731,287.23,#26.2,0.037974,0.8909,-0.4526,383.45,0.91974,-0.20824,-0.33273,349.88,-0.39068,-0.40364,-0.82731,287.23,#26.3,0.037974,0.8909,-0.4526,383.45,0.91974,-0.20824,-0.33273,349.88,-0.39068,-0.40364,-0.82731,287.23 |
| 29012 | | |
| 29013 | | > ui mousemode right "translate selected models" |
| 29014 | | |
| 29015 | | > view matrix models |
| 29016 | | > #26.1,0.037974,0.8909,-0.4526,445.91,0.91974,-0.20824,-0.33273,303.39,-0.39068,-0.40364,-0.82731,286.61,#26.2,0.037974,0.8909,-0.4526,445.91,0.91974,-0.20824,-0.33273,303.39,-0.39068,-0.40364,-0.82731,286.61,#26.3,0.037974,0.8909,-0.4526,445.91,0.91974,-0.20824,-0.33273,303.39,-0.39068,-0.40364,-0.82731,286.61 |
| 29017 | | |
| 29018 | | > view matrix models |
| 29019 | | > #26.1,0.037974,0.8909,-0.4526,439.11,0.91974,-0.20824,-0.33273,307.97,-0.39068,-0.40364,-0.82731,295.85,#26.2,0.037974,0.8909,-0.4526,439.11,0.91974,-0.20824,-0.33273,307.97,-0.39068,-0.40364,-0.82731,295.85,#26.3,0.037974,0.8909,-0.4526,439.11,0.91974,-0.20824,-0.33273,307.97,-0.39068,-0.40364,-0.82731,295.85 |
| 29020 | | |
| 29021 | | > ui mousemode right "rotate selected models" |
| 29022 | | |
| 29023 | | > view matrix models |
| 29024 | | > #26.1,-0.89543,0.25326,-0.36615,416.35,0.20899,0.9653,0.1566,380.35,0.39311,0.063706,-0.91728,311.28,#26.2,-0.89543,0.25326,-0.36615,416.35,0.20899,0.9653,0.1566,380.35,0.39311,0.063706,-0.91728,311.28,#26.3,-0.89543,0.25326,-0.36615,416.35,0.20899,0.9653,0.1566,380.35,0.39311,0.063706,-0.91728,311.28 |
| 29025 | | |
| 29026 | | > view matrix models |
| 29027 | | > #26.1,0.047267,0.99719,-0.058155,438.2,0.62825,0.015585,0.77786,300.81,0.77658,-0.073303,-0.62575,292.69,#26.2,0.047267,0.99719,-0.058155,438.2,0.62825,0.015585,0.77786,300.81,0.77658,-0.073303,-0.62575,292.69,#26.3,0.047267,0.99719,-0.058155,438.2,0.62825,0.015585,0.77786,300.81,0.77658,-0.073303,-0.62575,292.69 |
| 29028 | | |
| 29029 | | > view matrix models |
| 29030 | | > #26.1,0.77259,0.19013,-0.60576,396.95,0.39113,0.60902,0.69001,341.55,0.50012,-0.77003,0.39616,229.56,#26.2,0.77259,0.19013,-0.60576,396.95,0.39113,0.60902,0.69001,341.55,0.50012,-0.77003,0.39616,229.56,#26.3,0.77259,0.19013,-0.60576,396.95,0.39113,0.60902,0.69001,341.55,0.50012,-0.77003,0.39616,229.56 |
| 29031 | | |
| 29032 | | > ui mousemode right "translate selected models" |
| 29033 | | |
| 29034 | | > view matrix models |
| 29035 | | > #26.1,0.77259,0.19013,-0.60576,361.88,0.39113,0.60902,0.69001,352.33,0.50012,-0.77003,0.39616,257.47,#26.2,0.77259,0.19013,-0.60576,361.88,0.39113,0.60902,0.69001,352.33,0.50012,-0.77003,0.39616,257.47,#26.3,0.77259,0.19013,-0.60576,361.88,0.39113,0.60902,0.69001,352.33,0.50012,-0.77003,0.39616,257.47 |
| 29036 | | |
| 29037 | | > view matrix models |
| 29038 | | > #26.1,0.77259,0.19013,-0.60576,361.63,0.39113,0.60902,0.69001,346.51,0.50012,-0.77003,0.39616,264.79,#26.2,0.77259,0.19013,-0.60576,361.63,0.39113,0.60902,0.69001,346.51,0.50012,-0.77003,0.39616,264.79,#26.3,0.77259,0.19013,-0.60576,361.63,0.39113,0.60902,0.69001,346.51,0.50012,-0.77003,0.39616,264.79 |
| 29039 | | |
| 29040 | | > ui mousemode right "rotate selected models" |
| 29041 | | |
| 29042 | | > view matrix models |
| 29043 | | > #26.1,0.4891,-0.10273,-0.86616,353.6,0.76848,-0.41898,0.48363,286.53,-0.41259,-0.90216,-0.12598,277.47,#26.2,0.4891,-0.10273,-0.86616,353.6,0.76848,-0.41898,0.48363,286.53,-0.41259,-0.90216,-0.12598,277.47,#26.3,0.4891,-0.10273,-0.86616,353.6,0.76848,-0.41898,0.48363,286.53,-0.41259,-0.90216,-0.12598,277.47 |
| 29044 | | |
| 29045 | | > ui mousemode right "translate selected models" |
| 29046 | | |
| 29047 | | > view matrix models |
| 29048 | | > #26.1,0.4891,-0.10273,-0.86616,353.73,0.76848,-0.41898,0.48363,291.02,-0.41259,-0.90216,-0.12598,271.9,#26.2,0.4891,-0.10273,-0.86616,353.73,0.76848,-0.41898,0.48363,291.02,-0.41259,-0.90216,-0.12598,271.9,#26.3,0.4891,-0.10273,-0.86616,353.73,0.76848,-0.41898,0.48363,291.02,-0.41259,-0.90216,-0.12598,271.9 |
| 29049 | | |
| 29050 | | > view matrix models |
| 29051 | | > #26.1,0.4891,-0.10273,-0.86616,356.51,0.76848,-0.41898,0.48363,292.24,-0.41259,-0.90216,-0.12598,276.24,#26.2,0.4891,-0.10273,-0.86616,356.51,0.76848,-0.41898,0.48363,292.24,-0.41259,-0.90216,-0.12598,276.24,#26.3,0.4891,-0.10273,-0.86616,356.51,0.76848,-0.41898,0.48363,292.24,-0.41259,-0.90216,-0.12598,276.24 |
| 29052 | | |
| 29053 | | > view matrix models |
| 29054 | | > #26.1,0.4891,-0.10273,-0.86616,353.33,0.76848,-0.41898,0.48363,285.52,-0.41259,-0.90216,-0.12598,275.67,#26.2,0.4891,-0.10273,-0.86616,353.33,0.76848,-0.41898,0.48363,285.52,-0.41259,-0.90216,-0.12598,275.67,#26.3,0.4891,-0.10273,-0.86616,353.33,0.76848,-0.41898,0.48363,285.52,-0.41259,-0.90216,-0.12598,275.67 |
| 29055 | | |
| 29056 | | > ui mousemode right "rotate selected models" |
| 29057 | | |
| 29058 | | > view matrix models |
| 29059 | | > #26.1,0.798,-0.3484,-0.49174,326.24,0.6025,0.4796,0.63795,335.26,0.013581,-0.80536,0.59263,259.36,#26.2,0.798,-0.3484,-0.49174,326.24,0.6025,0.4796,0.63795,335.26,0.013581,-0.80536,0.59263,259.36,#26.3,0.798,-0.3484,-0.49174,326.24,0.6025,0.4796,0.63795,335.26,0.013581,-0.80536,0.59263,259.36 |
| 29060 | | |
| 29061 | | > view matrix models |
| 29062 | | > #26.1,0.80191,-0.25129,-0.54202,332.98,0.5903,0.47312,0.65399,334.61,0.092098,-0.8444,0.52773,257.47,#26.2,0.80191,-0.25129,-0.54202,332.98,0.5903,0.47312,0.65399,334.61,0.092098,-0.8444,0.52773,257.47,#26.3,0.80191,-0.25129,-0.54202,332.98,0.5903,0.47312,0.65399,334.61,0.092098,-0.8444,0.52773,257.47 |
| 29063 | | |
| 29064 | | > ui mousemode right "translate selected models" |
| 29065 | | |
| 29066 | | > view matrix models |
| 29067 | | > #26.1,0.80191,-0.25129,-0.54202,341.59,0.5903,0.47312,0.65399,350.85,0.092098,-0.8444,0.52773,258.32,#26.2,0.80191,-0.25129,-0.54202,341.59,0.5903,0.47312,0.65399,350.85,0.092098,-0.8444,0.52773,258.32,#26.3,0.80191,-0.25129,-0.54202,341.59,0.5903,0.47312,0.65399,350.85,0.092098,-0.8444,0.52773,258.32 |
| 29068 | | |
| 29069 | | > hide #!9 models |
| 29070 | | |
| 29071 | | > view matrix models |
| 29072 | | > #26.1,0.80191,-0.25129,-0.54202,337.98,0.5903,0.47312,0.65399,350.92,0.092098,-0.8444,0.52773,260.48,#26.2,0.80191,-0.25129,-0.54202,337.98,0.5903,0.47312,0.65399,350.92,0.092098,-0.8444,0.52773,260.48,#26.3,0.80191,-0.25129,-0.54202,337.98,0.5903,0.47312,0.65399,350.92,0.092098,-0.8444,0.52773,260.48 |
| 29073 | | |
| 29074 | | > ui mousemode right "rotate selected models" |
| 29075 | | |
| 29076 | | > view matrix models |
| 29077 | | > #26.1,0.84276,-0.097083,-0.52947,346.34,0.52714,-0.050334,0.84828,316.45,-0.109,-0.994,0.0087571,265.17,#26.2,0.84276,-0.097083,-0.52947,346.34,0.52714,-0.050334,0.84828,316.45,-0.109,-0.994,0.0087571,265.17,#26.3,0.84276,-0.097083,-0.52947,346.34,0.52714,-0.050334,0.84828,316.45,-0.109,-0.994,0.0087571,265.17 |
| 29078 | | |
| 29079 | | > view matrix models |
| 29080 | | > #26.1,0.8967,-0.046603,-0.44017,347.14,0.44234,0.13053,0.8873,327.01,0.016103,-0.99035,0.13766,260.95,#26.2,0.8967,-0.046603,-0.44017,347.14,0.44234,0.13053,0.8873,327.01,0.016103,-0.99035,0.13766,260.95,#26.3,0.8967,-0.046603,-0.44017,347.14,0.44234,0.13053,0.8873,327.01,0.016103,-0.99035,0.13766,260.95 |
| 29081 | | |
| 29082 | | > view matrix models |
| 29083 | | > #26.1,0.86269,-0.096518,-0.49643,345.79,0.48048,-0.14987,0.86411,310.91,-0.1578,-0.98398,-0.082914,267.9,#26.2,0.86269,-0.096518,-0.49643,345.79,0.48048,-0.14987,0.86411,310.91,-0.1578,-0.98398,-0.082914,267.9,#26.3,0.86269,-0.096518,-0.49643,345.79,0.48048,-0.14987,0.86411,310.91,-0.1578,-0.98398,-0.082914,267.9 |
| 29084 | | |
| 29085 | | > view matrix models |
| 29086 | | > #26.1,0.73916,-0.64204,-0.20354,307.63,0.51086,0.3375,0.79064,340.63,-0.43893,-0.68839,0.57746,277.07,#26.2,0.73916,-0.64204,-0.20354,307.63,0.51086,0.3375,0.79064,340.63,-0.43893,-0.68839,0.57746,277.07,#26.3,0.73916,-0.64204,-0.20354,307.63,0.51086,0.3375,0.79064,340.63,-0.43893,-0.68839,0.57746,277.07 |
| 29087 | | |
| 29088 | | > view matrix models |
| 29089 | | > #26.1,-0.2209,-0.8407,-0.4944,314.38,0.26146,-0.53941,0.80042,293.31,-0.9396,0.047549,0.33896,330.4,#26.2,-0.2209,-0.8407,-0.4944,314.38,0.26146,-0.53941,0.80042,293.31,-0.9396,0.047549,0.33896,330.4,#26.3,-0.2209,-0.8407,-0.4944,314.38,0.26146,-0.53941,0.80042,293.31,-0.9396,0.047549,0.33896,330.4 |
| 29090 | | |
| 29091 | | > view matrix models |
| 29092 | | > #26.1,-0.8552,0.18934,-0.48247,384.81,-0.34938,0.47698,0.80649,362.59,0.38283,0.85828,-0.34176,373.24,#26.2,-0.8552,0.18934,-0.48247,384.81,-0.34938,0.47698,0.80649,362.59,0.38283,0.85828,-0.34176,373.24,#26.3,-0.8552,0.18934,-0.48247,384.81,-0.34938,0.47698,0.80649,362.59,0.38283,0.85828,-0.34176,373.24 |
| 29093 | | |
| 29094 | | > hide #6 models |
| 29095 | | |
| 29096 | | > show #!9 models |
| 29097 | | |
| 29098 | | > view matrix models |
| 29099 | | > #26.1,-0.8404,0.022284,-0.5415,377.04,-0.17118,0.93709,0.30424,396.95,0.51422,0.34838,-0.78372,349.53,#26.2,-0.8404,0.022284,-0.5415,377.04,-0.17118,0.93709,0.30424,396.95,0.51422,0.34838,-0.78372,349.53,#26.3,-0.8404,0.022284,-0.5415,377.04,-0.17118,0.93709,0.30424,396.95,0.51422,0.34838,-0.78372,349.53 |
| 29100 | | |
| 29101 | | > hide #!9 models |
| 29102 | | |
| 29103 | | > view matrix models |
| 29104 | | > #26.1,-0.070909,-0.96249,0.26188,290.22,0.48549,0.19605,0.85198,331.32,-0.87136,0.18756,0.45338,338.1,#26.2,-0.070909,-0.96249,0.26188,290.22,0.48549,0.19605,0.85198,331.32,-0.87136,0.18756,0.45338,338.1,#26.3,-0.070909,-0.96249,0.26188,290.22,0.48549,0.19605,0.85198,331.32,-0.87136,0.18756,0.45338,338.1 |
| 29105 | | |
| 29106 | | > view matrix models |
| 29107 | | > #26.1,-0.86751,-0.49671,-0.026518,337.31,0.059229,-0.15608,0.98597,317.29,-0.49387,0.85377,0.16482,376.34,#26.2,-0.86751,-0.49671,-0.026518,337.31,0.059229,-0.15608,0.98597,317.29,-0.49387,0.85377,0.16482,376.34,#26.3,-0.86751,-0.49671,-0.026518,337.31,0.059229,-0.15608,0.98597,317.29,-0.49387,0.85377,0.16482,376.34 |
| 29108 | | |
| 29109 | | > show #!9 models |
| 29110 | | |
| 29111 | | > hide #!26.2 models |
| 29112 | | |
| 29113 | | > show #!26.2 models |
| 29114 | | |
| 29115 | | > hide #!26.2 models |
| 29116 | | |
| 29117 | | > show #!26.2 models |
| 29118 | | |
| 29119 | | > view matrix models |
| 29120 | | > #26.1,-0.222,-0.0027303,-0.97504,379.79,0.81238,0.5525,-0.18651,374.81,0.53922,-0.83351,-0.12043,265.27,#26.2,-0.222,-0.0027303,-0.97504,379.79,0.81238,0.5525,-0.18651,374.81,0.53922,-0.83351,-0.12043,265.27,#26.3,-0.222,-0.0027303,-0.97504,379.79,0.81238,0.5525,-0.18651,374.81,0.53922,-0.83351,-0.12043,265.27 |
| 29121 | | |
| 29122 | | > view matrix models |
| 29123 | | > #26.1,-0.27127,0.10151,-0.95713,386.11,0.76006,0.63271,-0.14832,379.45,0.59053,-0.76771,-0.24879,270.51,#26.2,-0.27127,0.10151,-0.95713,386.11,0.76006,0.63271,-0.14832,379.45,0.59053,-0.76771,-0.24879,270.51,#26.3,-0.27127,0.10151,-0.95713,386.11,0.76006,0.63271,-0.14832,379.45,0.59053,-0.76771,-0.24879,270.51 |
| 29124 | | |
| 29125 | | > view matrix models |
| 29126 | | > #26.1,-0.26905,0.12773,-0.95462,387.49,0.75503,0.64332,-0.12672,379.73,0.59794,-0.75486,-0.26953,271.48,#26.2,-0.26905,0.12773,-0.95462,387.49,0.75503,0.64332,-0.12672,379.73,0.59794,-0.75486,-0.26953,271.48,#26.3,-0.26905,0.12773,-0.95462,387.49,0.75503,0.64332,-0.12672,379.73,0.59794,-0.75486,-0.26953,271.48 |
| 29127 | | |
| 29128 | | > ui mousemode right "translate selected models" |
| 29129 | | |
| 29130 | | > view matrix models |
| 29131 | | > #26.1,-0.26905,0.12773,-0.95462,390.61,0.75503,0.64332,-0.12672,378.77,0.59794,-0.75486,-0.26953,284.76,#26.2,-0.26905,0.12773,-0.95462,390.61,0.75503,0.64332,-0.12672,378.77,0.59794,-0.75486,-0.26953,284.76,#26.3,-0.26905,0.12773,-0.95462,390.61,0.75503,0.64332,-0.12672,378.77,0.59794,-0.75486,-0.26953,284.76 |
| 29132 | | |
| 29133 | | > ui mousemode right "rotate selected models" |
| 29134 | | |
| 29135 | | > view matrix models |
| 29136 | | > #26.1,-0.35988,0.15638,-0.9198,392.91,0.64052,0.75824,-0.1217,386.9,0.6784,-0.63294,-0.37304,292.66,#26.2,-0.35988,0.15638,-0.9198,392.91,0.64052,0.75824,-0.1217,386.9,0.6784,-0.63294,-0.37304,292.66,#26.3,-0.35988,0.15638,-0.9198,392.91,0.64052,0.75824,-0.1217,386.9,0.6784,-0.63294,-0.37304,292.66 |
| 29137 | | |
| 29138 | | > ui mousemode right "translate selected models" |
| 29139 | | |
| 29140 | | > view matrix models |
| 29141 | | > #26.1,-0.35988,0.15638,-0.9198,394.51,0.64052,0.75824,-0.1217,387.2,0.6784,-0.63294,-0.37304,294.27,#26.2,-0.35988,0.15638,-0.9198,394.51,0.64052,0.75824,-0.1217,387.2,0.6784,-0.63294,-0.37304,294.27,#26.3,-0.35988,0.15638,-0.9198,394.51,0.64052,0.75824,-0.1217,387.2,0.6784,-0.63294,-0.37304,294.27 |
| 29142 | | |
| 29143 | | > view matrix models |
| 29144 | | > #26.1,-0.35988,0.15638,-0.9198,391.94,0.64052,0.75824,-0.1217,388.3,0.6784,-0.63294,-0.37304,294.67,#26.2,-0.35988,0.15638,-0.9198,391.94,0.64052,0.75824,-0.1217,388.3,0.6784,-0.63294,-0.37304,294.67,#26.3,-0.35988,0.15638,-0.9198,391.94,0.64052,0.75824,-0.1217,388.3,0.6784,-0.63294,-0.37304,294.67 |
| 29145 | | |
| 29146 | | > show #6 models |
| 29147 | | |
| 29148 | | > hide #6 models |
| 29149 | | |
| 29150 | | > view matrix models |
| 29151 | | > #26.1,-0.35988,0.15638,-0.9198,392.75,0.64052,0.75824,-0.1217,388.07,0.6784,-0.63294,-0.37304,294.25,#26.2,-0.35988,0.15638,-0.9198,392.75,0.64052,0.75824,-0.1217,388.07,0.6784,-0.63294,-0.37304,294.25,#26.3,-0.35988,0.15638,-0.9198,392.75,0.64052,0.75824,-0.1217,388.07,0.6784,-0.63294,-0.37304,294.25 |
| 29152 | | |
| 29153 | | > ui mousemode right "rotate selected models" |
| 29154 | | |
| 29155 | | > view matrix models |
| 29156 | | > #26.1,-0.40865,0.25097,-0.87751,397.72,0.68395,0.72082,-0.11235,385.23,0.60433,-0.64609,-0.46621,296.48,#26.2,-0.40865,0.25097,-0.87751,397.72,0.68395,0.72082,-0.11235,385.23,0.60433,-0.64609,-0.46621,296.48,#26.3,-0.40865,0.25097,-0.87751,397.72,0.68395,0.72082,-0.11235,385.23,0.60433,-0.64609,-0.46621,296.48 |
| 29157 | | |
| 29158 | | > hide #10 models |
| 29159 | | |
| 29160 | | > show #10 models |
| 29161 | | |
| 29162 | | > view matrix models |
| 29163 | | > #26.1,-0.30992,0.28191,-0.90801,398.61,0.71685,0.69665,-0.028386,381.7,0.62456,-0.65971,-0.41799,294.45,#26.2,-0.30992,0.28191,-0.90801,398.61,0.71685,0.69665,-0.028386,381.7,0.62456,-0.65971,-0.41799,294.45,#26.3,-0.30992,0.28191,-0.90801,398.61,0.71685,0.69665,-0.028386,381.7,0.62456,-0.65971,-0.41799,294.45 |
| 29164 | | |
| 29165 | | > ui mousemode right "translate selected models" |
| 29166 | | |
| 29167 | | > view matrix models |
| 29168 | | > #26.1,-0.30992,0.28191,-0.90801,400.27,0.71685,0.69665,-0.028386,381.49,0.62456,-0.65971,-0.41799,294.35,#26.2,-0.30992,0.28191,-0.90801,400.27,0.71685,0.69665,-0.028386,381.49,0.62456,-0.65971,-0.41799,294.35,#26.3,-0.30992,0.28191,-0.90801,400.27,0.71685,0.69665,-0.028386,381.49,0.62456,-0.65971,-0.41799,294.35 |
| 29169 | | |
| 29170 | | > hide #10 models |
| 29171 | | |
| 29172 | | > show #10 models |
| 29173 | | |
| 29174 | | > hide #10 models |
| 29175 | | |
| 29176 | | > show #10 models |
| 29177 | | |
| 29178 | | > view matrix models |
| 29179 | | > #26.1,-0.30992,0.28191,-0.90801,399.38,0.71685,0.69665,-0.028386,381.71,0.62456,-0.65971,-0.41799,294.46,#26.2,-0.30992,0.28191,-0.90801,399.38,0.71685,0.69665,-0.028386,381.71,0.62456,-0.65971,-0.41799,294.46,#26.3,-0.30992,0.28191,-0.90801,399.38,0.71685,0.69665,-0.028386,381.71,0.62456,-0.65971,-0.41799,294.46 |
| 29180 | | |
| 29181 | | > select subtract #26.2 |
| 29182 | | |
| 29183 | | 2434 atoms, 2477 bonds, 3 pseudobonds, 301 residues, 3 models selected |
| 29184 | | |
| 29185 | | > select add #26.2 |
| 29186 | | |
| 29187 | | 4503 atoms, 4577 bonds, 5 pseudobonds, 565 residues, 5 models selected |
| 29188 | | |
| 29189 | | > select subtract #26.2 |
| 29190 | | |
| 29191 | | 2434 atoms, 2477 bonds, 3 pseudobonds, 301 residues, 3 models selected |
| 29192 | | |
| 29193 | | > select add #26.2 |
| 29194 | | |
| 29195 | | 4503 atoms, 4577 bonds, 5 pseudobonds, 565 residues, 5 models selected |
| 29196 | | |
| 29197 | | > select subtract #26.2 |
| 29198 | | |
| 29199 | | 2434 atoms, 2477 bonds, 3 pseudobonds, 301 residues, 3 models selected |
| 29200 | | |
| 29201 | | > hide #26.3 models |
| 29202 | | |
| 29203 | | > select subtract #26.3 |
| 29204 | | |
| 29205 | | 1306 atoms, 1331 bonds, 3 pseudobonds, 161 residues, 2 models selected |
| 29206 | | |
| 29207 | | > hide #!26.1 models |
| 29208 | | |
| 29209 | | > select add #26 |
| 29210 | | |
| 29211 | | 4503 atoms, 4577 bonds, 5 pseudobonds, 565 residues, 6 models selected |
| 29212 | | |
| 29213 | | > select subtract #26.1 |
| 29214 | | |
| 29215 | | 3197 atoms, 3246 bonds, 2 pseudobonds, 404 residues, 4 models selected |
| 29216 | | |
| 29217 | | > select subtract #26.3 |
| 29218 | | |
| 29219 | | 2069 atoms, 2100 bonds, 2 pseudobonds, 264 residues, 3 models selected |
| 29220 | | |
| 29221 | | > select subtract #26.2 |
| 29222 | | |
| 29223 | | 1 model selected |
| 29224 | | |
| 29225 | | > select add #26.2 |
| 29226 | | |
| 29227 | | 2069 atoms, 2100 bonds, 2 pseudobonds, 264 residues, 3 models selected |
| 29228 | | |
| 29229 | | > select subtract #26.2 |
| 29230 | | |
| 29231 | | 1 model selected |
| 29232 | | |
| 29233 | | > select add #26.2 |
| 29234 | | |
| 29235 | | 2069 atoms, 2100 bonds, 2 pseudobonds, 264 residues, 3 models selected |
| 29236 | | |
| 29237 | | > select add #26.1 |
| 29238 | | |
| 29239 | | 3375 atoms, 3431 bonds, 5 pseudobonds, 425 residues, 5 models selected |
| 29240 | | |
| 29241 | | > select add #26.3 |
| 29242 | | |
| 29243 | | 4503 atoms, 4577 bonds, 5 pseudobonds, 565 residues, 6 models selected |
| 29244 | | |
| 29245 | | > view matrix models #26,1,0,0,4.2091,0,1,0,1.5586,0,0,1,0.98728 |
| 29246 | | |
| 29247 | | > ui mousemode right "rotate selected models" |
| 29248 | | |
| 29249 | | > view matrix models |
| 29250 | | > #26,0.99292,0.046255,-0.1094,26.419,-0.057538,0.99308,-0.10234,57.876,0.10391,0.10791,0.98872,-69.757 |
| 29251 | | |
| 29252 | | > ui mousemode right "translate selected models" |
| 29253 | | |
| 29254 | | > view matrix models |
| 29255 | | > #26,0.99292,0.046255,-0.1094,25.7,-0.057538,0.99308,-0.10234,57.766,0.10391,0.10791,0.98872,-69.773 |
| 29256 | | |
| 29257 | | > ui mousemode right "rotate selected models" |
| 29258 | | |
| 29259 | | > view matrix models |
| 29260 | | > #26,0.9943,0.090076,-0.05699,-7.6676,-0.096073,0.98893,-0.11311,76.212,0.04617,0.11794,0.99195,-54.31 |
| 29261 | | |
| 29262 | | > ui mousemode right "translate selected models" |
| 29263 | | |
| 29264 | | > view matrix models |
| 29265 | | > #26,0.9943,0.090076,-0.05699,-8.0235,-0.096073,0.98893,-0.11311,76.44,0.04617,0.11794,0.99195,-53.214 |
| 29266 | | |
| 29267 | | > ui mousemode right "rotate selected models" |
| 29268 | | |
| 29269 | | > view matrix models |
| 29270 | | > #26,0.98874,0.14081,0.050686,-59.702,-0.13797,0.98886,-0.055852,72.11,-0.057986,0.048231,0.99715,6.0638 |
| 29271 | | |
| 29272 | | > ui mousemode right "translate selected models" |
| 29273 | | |
| 29274 | | > view matrix models |
| 29275 | | > #26,0.98874,0.14081,0.050686,-59.111,-0.13797,0.98886,-0.055852,72.269,-0.057986,0.048231,0.99715,5.6766 |
| 29276 | | |
| 29277 | | > show #26.3 models |
| 29278 | | |
| 29279 | | > hide #26.3 models |
| 29280 | | |
| 29281 | | > show #26.3 models |
| 29282 | | |
| 29283 | | > hide #26.3 models |
| 29284 | | |
| 29285 | | > select subtract #26.3 |
| 29286 | | |
| 29287 | | 3375 atoms, 3431 bonds, 5 pseudobonds, 425 residues, 5 models selected |
| 29288 | | |
| 29289 | | > select subtract #26.1 |
| 29290 | | |
| 29291 | | 2069 atoms, 2100 bonds, 2 pseudobonds, 264 residues, 3 models selected |
| 29292 | | |
| 29293 | | > select add #26 |
| 29294 | | |
| 29295 | | 4503 atoms, 4577 bonds, 5 pseudobonds, 565 residues, 6 models selected |
| 29296 | | |
| 29297 | | > select subtract #26 |
| 29298 | | |
| 29299 | | Nothing selected |
| 29300 | | |
| 29301 | | > hide #!26.2 models |
| 29302 | | |
| 29303 | | > show #!26.2 models |
| 29304 | | |
| 29305 | | > hide #!26.2 models |
| 29306 | | |
| 29307 | | > show #!1 models |
| 29308 | | |
| 29309 | | > hide #!9 models |
| 29310 | | |
| 29311 | | > hide #10 models |
| 29312 | | |
| 29313 | | > show #!26.2 models |
| 29314 | | |
| 29315 | | > fitmap #26.2 inMap #1 |
| 29316 | | |
| 29317 | | Fit molecule 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#26.2) to map |
| 29318 | | postprocess_20231221.mrc (#1) using 2069 atoms |
| 29319 | | average map value = 0.005974, steps = 84 |
| 29320 | | shifted from previous position = 3.66 |
| 29321 | | rotated from previous position = 6.23 degrees |
| 29322 | | atoms outside contour = 720, contour level = 0.0033794 |
| 29323 | | |
| 29324 | | Position of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#26.2) relative to |
| 29325 | | postprocess_20231221.mrc (#1) coordinates: |
| 29326 | | Matrix rotation and translation |
| 29327 | | -0.25151266 0.19854926 -0.94726953 280.15790271 |
| 29328 | | 0.70120494 0.71200202 -0.03694244 273.62980535 |
| 29329 | | 0.66712293 -0.67352156 -0.31830125 179.25904604 |
| 29330 | | Axis -0.35234390 -0.89355952 0.27821783 |
| 29331 | | Axis point -6.15326635 0.00000000 194.77142939 |
| 29332 | | Rotation angle (degrees) 115.39814881 |
| 29333 | | Shift along axis -293.34338391 |
| 29334 | | |
| 29335 | | |
| 29336 | | > hide #!26.2 models |
| 29337 | | |
| 29338 | | > show #26.3 models |
| 29339 | | |
| 29340 | | > fitmap #26.3 inMap #1 |
| 29341 | | |
| 29342 | | Fit molecule 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#26.3) to map |
| 29343 | | postprocess_20231221.mrc (#1) using 1128 atoms |
| 29344 | | average map value = 0.004508, steps = 72 |
| 29345 | | shifted from previous position = 4.99 |
| 29346 | | rotated from previous position = 7.06 degrees |
| 29347 | | atoms outside contour = 422, contour level = 0.0033794 |
| 29348 | | |
| 29349 | | Position of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#26.3) relative to |
| 29350 | | postprocess_20231221.mrc (#1) coordinates: |
| 29351 | | Matrix rotation and translation |
| 29352 | | -0.24642181 0.18243493 -0.95183705 278.78686774 |
| 29353 | | 0.71472521 0.69751812 -0.05134514 272.65638016 |
| 29354 | | 0.65455645 -0.69295451 -0.30227453 177.98352930 |
| 29355 | | Axis -0.35451301 -0.88759210 0.29411016 |
| 29356 | | Axis point -9.04055568 0.00000000 197.28184806 |
| 29357 | | Rotation angle (degrees) 115.18795785 |
| 29358 | | Shift along axis -288.49445780 |
| 29359 | | |
| 29360 | | |
| 29361 | | > hide #26.3 models |
| 29362 | | |
| 29363 | | > show #!26.1 models |
| 29364 | | |
| 29365 | | > fitmap #26.1 inMap #1 |
| 29366 | | |
| 29367 | | Fit molecule 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#26.1) to map |
| 29368 | | postprocess_20231221.mrc (#1) using 1306 atoms |
| 29369 | | average map value = 0.004381, steps = 88 |
| 29370 | | shifted from previous position = 4.09 |
| 29371 | | rotated from previous position = 9.86 degrees |
| 29372 | | atoms outside contour = 492, contour level = 0.0033794 |
| 29373 | | |
| 29374 | | Position of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#26.1) relative to |
| 29375 | | postprocess_20231221.mrc (#1) coordinates: |
| 29376 | | Matrix rotation and translation |
| 29377 | | -0.18671356 0.19708855 -0.96244176 280.99462623 |
| 29378 | | 0.67999636 0.73299000 0.01818230 273.70447792 |
| 29379 | | 0.70904371 -0.65106201 -0.27087867 179.37002260 |
| 29380 | | Axis -0.35901311 -0.89666089 0.25905373 |
| 29381 | | Axis point -12.36298520 0.00000000 195.35880618 |
| 29382 | | Rotation angle (degrees) 111.24158265 |
| 29383 | | Shift along axis -299.83438256 |
| 29384 | | |
| 29385 | | |
| 29386 | | > hide #!26.1 models |
| 29387 | | |
| 29388 | | > hide #!26 models |
| 29389 | | |
| 29390 | | > show #!26.1 models |
| 29391 | | |
| 29392 | | > show #!26.2 models |
| 29393 | | |
| 29394 | | > show #26.3 models |
| 29395 | | |
| 29396 | | > hide #!1 models |
| 29397 | | |
| 29398 | | > show #10 models |
| 29399 | | |
| 29400 | | > hide #10 models |
| 29401 | | |
| 29402 | | > show #10 models |
| 29403 | | |
| 29404 | | > hide #10 models |
| 29405 | | |
| 29406 | | > show #!9 models |
| 29407 | | |
| 29408 | | > hide #!9 models |
| 29409 | | |
| 29410 | | > show #!9 models |
| 29411 | | |
| 29412 | | > hide #!9 models |
| 29413 | | |
| 29414 | | > show #6 models |
| 29415 | | |
| 29416 | | > hide #6 models |
| 29417 | | |
| 29418 | | > show #6 models |
| 29419 | | |
| 29420 | | > hide #6 models |
| 29421 | | |
| 29422 | | > show #5 models |
| 29423 | | |
| 29424 | | > hide #5 models |
| 29425 | | |
| 29426 | | > show #5 models |
| 29427 | | |
| 29428 | | > hide #5 models |
| 29429 | | |
| 29430 | | > show #5 models |
| 29431 | | |
| 29432 | | > hide #5 models |
| 29433 | | |
| 29434 | | > show #5 models |
| 29435 | | |
| 29436 | | > hide #5 models |
| 29437 | | |
| 29438 | | > show #5 models |
| 29439 | | |
| 29440 | | > hide #5 models |
| 29441 | | |
| 29442 | | > show #5 models |
| 29443 | | |
| 29444 | | > hide #5 models |
| 29445 | | |
| 29446 | | > hide #!26 models |
| 29447 | | |
| 29448 | | > show #!25 models |
| 29449 | | |
| 29450 | | > hide #25.11 models |
| 29451 | | |
| 29452 | | > hide #25.10 models |
| 29453 | | |
| 29454 | | > hide #25.9 models |
| 29455 | | |
| 29456 | | > hide #25.8 models |
| 29457 | | |
| 29458 | | > hide #!25.7 models |
| 29459 | | |
| 29460 | | > hide #!25.6 models |
| 29461 | | |
| 29462 | | > hide #25.5 models |
| 29463 | | |
| 29464 | | > hide #!25.4 models |
| 29465 | | |
| 29466 | | > hide #25.3 models |
| 29467 | | |
| 29468 | | > hide #!25.2 models |
| 29469 | | |
| 29470 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 29471 | | > dataset/Chimera sessions/20240212_leaf_fitting_v4.cxs" |
| 29472 | | |
| 29473 | | > show #3 models |
| 29474 | | |
| 29475 | | > show #!1 models |
| 29476 | | |
| 29477 | | > hide #3 models |
| 29478 | | |
| 29479 | | > fitmap #25.1 inMap #1 |
| 29480 | | |
| 29481 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif A (#25.1) to map |
| 29482 | | postprocess_20231221.mrc (#1) using 3251 atoms |
| 29483 | | average map value = 0.003304, steps = 76 |
| 29484 | | shifted from previous position = 6.61 |
| 29485 | | rotated from previous position = 8.15 degrees |
| 29486 | | atoms outside contour = 2052, contour level = 0.0033794 |
| 29487 | | |
| 29488 | | Position of 5nzr_COPI_coat_leaf_2017.cif A (#25.1) relative to |
| 29489 | | postprocess_20231221.mrc (#1) coordinates: |
| 29490 | | Matrix rotation and translation |
| 29491 | | -0.51570328 0.84654128 -0.13197720 175.00196838 |
| 29492 | | -0.85566106 -0.51671538 0.02914378 363.06707979 |
| 29493 | | -0.04352323 0.12795729 0.99082423 110.61591954 |
| 29494 | | Axis 0.05787500 -0.05180742 -0.99697867 |
| 29495 | | Axis point 191.18696526 127.45480887 0.00000000 |
| 29496 | | Rotation angle (degrees) 121.38574275 |
| 29497 | | Shift along axis -118.96304353 |
| 29498 | | |
| 29499 | | |
| 29500 | | > volume #1 level 0.003071 |
| 29501 | | |
| 29502 | | > hide #25.1 models |
| 29503 | | |
| 29504 | | > show #25.1 models |
| 29505 | | |
| 29506 | | > show #3 models |
| 29507 | | |
| 29508 | | > hide #3 models |
| 29509 | | |
| 29510 | | > show #3 models |
| 29511 | | |
| 29512 | | > hide #3 models |
| 29513 | | |
| 29514 | | > show #3 models |
| 29515 | | |
| 29516 | | > hide #3 models |
| 29517 | | |
| 29518 | | > show #3 models |
| 29519 | | |
| 29520 | | > hide #!1 models |
| 29521 | | |
| 29522 | | > hide #3 models |
| 29523 | | |
| 29524 | | > show #3 models |
| 29525 | | |
| 29526 | | > hide #3 models |
| 29527 | | |
| 29528 | | > show #3 models |
| 29529 | | |
| 29530 | | > hide #3 models |
| 29531 | | |
| 29532 | | > show #3 models |
| 29533 | | |
| 29534 | | > hide #3 models |
| 29535 | | |
| 29536 | | > show #3 models |
| 29537 | | |
| 29538 | | > select add #25.1 |
| 29539 | | |
| 29540 | | 3251 atoms, 3250 bonds, 813 residues, 1 model selected |
| 29541 | | |
| 29542 | | > select subtract #25.1 |
| 29543 | | |
| 29544 | | Nothing selected |
| 29545 | | |
| 29546 | | > select add #25.1 |
| 29547 | | |
| 29548 | | 3251 atoms, 3250 bonds, 813 residues, 1 model selected |
| 29549 | | |
| 29550 | | > select subtract #25.1 |
| 29551 | | |
| 29552 | | Nothing selected |
| 29553 | | |
| 29554 | | > show #!1 models |
| 29555 | | |
| 29556 | | > hide #3 models |
| 29557 | | |
| 29558 | | > show #3 models |
| 29559 | | |
| 29560 | | > hide #3 models |
| 29561 | | |
| 29562 | | > show #3 models |
| 29563 | | |
| 29564 | | > select add #25.1 |
| 29565 | | |
| 29566 | | 3251 atoms, 3250 bonds, 813 residues, 1 model selected |
| 29567 | | |
| 29568 | | > view matrix models |
| 29569 | | > #25.1,-0.51709,0.8453,-0.13446,287.41,-0.8545,-0.5189,0.023964,478.85,-0.049517,0.12729,0.99063,221.57 |
| 29570 | | |
| 29571 | | > view matrix models |
| 29572 | | > #25.1,-0.51709,0.8453,-0.13446,289.02,-0.8545,-0.5189,0.023964,478.87,-0.049517,0.12729,0.99063,223.3 |
| 29573 | | |
| 29574 | | > view matrix models |
| 29575 | | > #25.1,-0.51709,0.8453,-0.13446,289.82,-0.8545,-0.5189,0.023964,480.94,-0.049517,0.12729,0.99063,224.61 |
| 29576 | | |
| 29577 | | > fitmap #25.1 inMap #1 |
| 29578 | | |
| 29579 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif A (#25.1) to map |
| 29580 | | postprocess_20231221.mrc (#1) using 3251 atoms |
| 29581 | | average map value = 0.003304, steps = 72 |
| 29582 | | shifted from previous position = 5.72 |
| 29583 | | rotated from previous position = 0.0289 degrees |
| 29584 | | atoms outside contour = 1774, contour level = 0.0030713 |
| 29585 | | |
| 29586 | | Position of 5nzr_COPI_coat_leaf_2017.cif A (#25.1) relative to |
| 29587 | | postprocess_20231221.mrc (#1) coordinates: |
| 29588 | | Matrix rotation and translation |
| 29589 | | -0.51531842 0.84673508 -0.13223699 174.97340097 |
| 29590 | | -0.85588796 -0.51634064 0.02912268 363.05334011 |
| 29591 | | -0.04362014 0.12818750 0.99079021 110.60727657 |
| 29592 | | Axis 0.05800716 -0.05188938 -0.99696673 |
| 29593 | | Axis point 191.22444071 127.42113577 0.00000000 |
| 29594 | | Rotation angle (degrees) 121.36139660 |
| 29595 | | Shift along axis -118.96067676 |
| 29596 | | |
| 29597 | | |
| 29598 | | > view matrix models |
| 29599 | | > #25.1,-0.51671,0.8455,-0.13472,290.27,-0.85472,-0.51853,0.023944,478.36,-0.049614,0.12752,0.99059,225.17 |
| 29600 | | |
| 29601 | | > view matrix models |
| 29602 | | > #25.1,-0.51671,0.8455,-0.13472,288.94,-0.85472,-0.51853,0.023944,479.27,-0.049614,0.12752,0.99059,223.88 |
| 29603 | | |
| 29604 | | > ui mousemode right "rotate selected models" |
| 29605 | | |
| 29606 | | > view matrix models |
| 29607 | | > #25.1,-0.45653,0.83292,-0.31278,302.89,-0.87051,-0.49081,-0.036415,486.46,-0.18385,0.25565,0.94913,237.18 |
| 29608 | | |
| 29609 | | > view matrix models |
| 29610 | | > #25.1,-0.49779,0.82837,-0.25692,301.69,-0.85509,-0.51829,-0.014326,483.69,-0.14502,0.21256,0.96633,233.09 |
| 29611 | | |
| 29612 | | > view matrix models |
| 29613 | | > #25.1,-0.54342,0.83542,-0.082221,286.71,-0.83935,-0.53919,0.069007,473.48,0.013318,0.10651,0.99422,217.18 |
| 29614 | | |
| 29615 | | > fitmap #25.1 inMap #1 |
| 29616 | | |
| 29617 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif A (#25.1) to map |
| 29618 | | postprocess_20231221.mrc (#1) using 3251 atoms |
| 29619 | | average map value = 0.003303, steps = 60 |
| 29620 | | shifted from previous position = 3.59 |
| 29621 | | rotated from previous position = 4.18 degrees |
| 29622 | | atoms outside contour = 1781, contour level = 0.0030713 |
| 29623 | | |
| 29624 | | Position of 5nzr_COPI_coat_leaf_2017.cif A (#25.1) relative to |
| 29625 | | postprocess_20231221.mrc (#1) coordinates: |
| 29626 | | Matrix rotation and translation |
| 29627 | | -0.51505629 0.84701325 -0.13147459 174.85233957 |
| 29628 | | -0.85604854 -0.51609939 0.02867597 363.09628018 |
| 29629 | | -0.04356503 0.12731837 0.99090469 110.58957119 |
| 29630 | | Axis 0.05774709 -0.05146389 -0.99700388 |
| 29631 | | Axis point 191.21569735 127.49165061 0.00000000 |
| 29632 | | Rotation angle (degrees) 121.34066991 |
| 29633 | | Shift along axis -118.84736446 |
| 29634 | | |
| 29635 | | |
| 29636 | | > select add #25 |
| 29637 | | |
| 29638 | | 18970 atoms, 18952 bonds, 7 pseudobonds, 4746 residues, 16 models selected |
| 29639 | | |
| 29640 | | > select subtract #25 |
| 29641 | | |
| 29642 | | Nothing selected |
| 29643 | | |
| 29644 | | > hide #25.1 models |
| 29645 | | |
| 29646 | | > hide #3 models |
| 29647 | | |
| 29648 | | > show #4 models |
| 29649 | | |
| 29650 | | > fitmap #4 inMap #1 |
| 29651 | | |
| 29652 | | Fit molecule CopB_Q9JIF7.pdb (#4) to map postprocess_20231221.mrc (#1) using |
| 29653 | | 7501 atoms |
| 29654 | | average map value = 0.002923, steps = 104 |
| 29655 | | shifted from previous position = 0.0401 |
| 29656 | | rotated from previous position = 0.0432 degrees |
| 29657 | | atoms outside contour = 4902, contour level = 0.0030713 |
| 29658 | | |
| 29659 | | Position of CopB_Q9JIF7.pdb (#4) relative to postprocess_20231221.mrc (#1) |
| 29660 | | coordinates: |
| 29661 | | Matrix rotation and translation |
| 29662 | | -0.04178861 -0.73263752 0.67933495 172.38956196 |
| 29663 | | -0.03794698 0.68060212 0.73166985 204.58398347 |
| 29664 | | -0.99840560 0.00479676 -0.05624279 236.24298737 |
| 29665 | | Axis -0.37162091 0.85776110 0.35516727 |
| 29666 | | Axis point 209.21418723 0.00000000 -39.77416060 |
| 29667 | | Rotation angle (degrees) 102.04703741 |
| 29668 | | Shift along axis 195.32639425 |
| 29669 | | |
| 29670 | | |
| 29671 | | > fitmap #4 inMap #1 |
| 29672 | | |
| 29673 | | Fit molecule CopB_Q9JIF7.pdb (#4) to map postprocess_20231221.mrc (#1) using |
| 29674 | | 7501 atoms |
| 29675 | | average map value = 0.002923, steps = 64 |
| 29676 | | shifted from previous position = 0.021 |
| 29677 | | rotated from previous position = 0.0638 degrees |
| 29678 | | atoms outside contour = 4911, contour level = 0.0030713 |
| 29679 | | |
| 29680 | | Position of CopB_Q9JIF7.pdb (#4) relative to postprocess_20231221.mrc (#1) |
| 29681 | | coordinates: |
| 29682 | | Matrix rotation and translation |
| 29683 | | -0.04153332 -0.73322783 0.67871344 172.38830087 |
| 29684 | | -0.03864426 0.67997019 0.73222071 204.57471491 |
| 29685 | | -0.99838950 0.00418318 -0.05657646 236.22842183 |
| 29686 | | Axis -0.37224512 0.85750164 0.35514012 |
| 29687 | | Axis point 209.31973663 0.00000000 -39.80649837 |
| 29688 | | Rotation angle (degrees) 102.06784558 |
| 29689 | | Shift along axis 195.14664218 |
| 29690 | | |
| 29691 | | |
| 29692 | | > show #!25.2 models |
| 29693 | | |
| 29694 | | > hide #4 models |
| 29695 | | |
| 29696 | | > show #4 models |
| 29697 | | |
| 29698 | | > hide #4 models |
| 29699 | | |
| 29700 | | > show #4 models |
| 29701 | | |
| 29702 | | > hide #4 models |
| 29703 | | |
| 29704 | | > show #4 models |
| 29705 | | |
| 29706 | | > fitmap #25.2 inMap #1 |
| 29707 | | |
| 29708 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map |
| 29709 | | postprocess_20231221.mrc (#1) using 3198 atoms |
| 29710 | | average map value = 0.004743, steps = 2000 |
| 29711 | | shifted from previous position = 2.46 |
| 29712 | | rotated from previous position = 6.13 degrees |
| 29713 | | atoms outside contour = 1278, contour level = 0.0030713 |
| 29714 | | |
| 29715 | | Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to |
| 29716 | | postprocess_20231221.mrc (#1) coordinates: |
| 29717 | | Matrix rotation and translation |
| 29718 | | -0.49442736 0.86623346 -0.07198031 164.49609954 |
| 29719 | | -0.86875419 -0.49517333 0.00833736 369.63869235 |
| 29720 | | -0.02842063 0.06665542 0.99737120 110.41166003 |
| 29721 | | Axis 0.03358341 -0.02508456 -0.99912107 |
| 29722 | | Axis point 190.62534040 134.54688866 0.00000000 |
| 29723 | | Rotation angle (degrees) 119.74328500 |
| 29724 | | Shift along axis -114.06249956 |
| 29725 | | |
| 29726 | | |
| 29727 | | > hide #4 models |
| 29728 | | |
| 29729 | | > show #4 models |
| 29730 | | |
| 29731 | | > hide #4 models |
| 29732 | | |
| 29733 | | > show #4 models |
| 29734 | | |
| 29735 | | > hide #!25.2 models |
| 29736 | | |
| 29737 | | > show #!25.2 models |
| 29738 | | |
| 29739 | | > select add #25.2 |
| 29740 | | |
| 29741 | | 3198 atoms, 3193 bonds, 4 pseudobonds, 800 residues, 2 models selected |
| 29742 | | |
| 29743 | | > view matrix models |
| 29744 | | > #25.2,-0.46567,0.88192,-0.073296,271.78,-0.88478,-0.4623,0.058711,474.61,0.017894,0.09219,0.99558,214.64 |
| 29745 | | |
| 29746 | | > view matrix models |
| 29747 | | > #25.2,-0.55363,0.8313,-0.04925,284.93,-0.82948,-0.55573,-0.055934,489.52,-0.073868,0.0098851,0.99722,233.82 |
| 29748 | | |
| 29749 | | > fitmap #25.2 inMap #1 |
| 29750 | | |
| 29751 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map |
| 29752 | | postprocess_20231221.mrc (#1) using 3198 atoms |
| 29753 | | average map value = 0.004821, steps = 244 |
| 29754 | | shifted from previous position = 0.916 |
| 29755 | | rotated from previous position = 5.51 degrees |
| 29756 | | atoms outside contour = 1143, contour level = 0.0030713 |
| 29757 | | |
| 29758 | | Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to |
| 29759 | | postprocess_20231221.mrc (#1) coordinates: |
| 29760 | | Matrix rotation and translation |
| 29761 | | -0.49480240 0.86519279 -0.08131428 165.41453083 |
| 29762 | | -0.86827537 -0.49605252 0.00545632 369.30583029 |
| 29763 | | -0.03561538 0.07330299 0.99667357 111.45220029 |
| 29764 | | Axis 0.03909576 -0.02633339 -0.99888842 |
| 29765 | | Axis point 191.15498632 133.89450699 0.00000000 |
| 29766 | | Rotation angle (degrees) 119.80770683 |
| 29767 | | Shift along axis -114.58638176 |
| 29768 | | |
| 29769 | | |
| 29770 | | > fitmap #25.2 inMap #1 |
| 29771 | | |
| 29772 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map |
| 29773 | | postprocess_20231221.mrc (#1) using 3198 atoms |
| 29774 | | average map value = 0.004764, steps = 2000 |
| 29775 | | shifted from previous position = 0.361 |
| 29776 | | rotated from previous position = 0.941 degrees |
| 29777 | | atoms outside contour = 1209, contour level = 0.0030713 |
| 29778 | | |
| 29779 | | Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to |
| 29780 | | postprocess_20231221.mrc (#1) coordinates: |
| 29781 | | Matrix rotation and translation |
| 29782 | | -0.50397347 0.85977352 -0.08246348 167.59629738 |
| 29783 | | -0.86244191 -0.50611966 -0.00606848 370.88262237 |
| 29784 | | -0.04695391 0.06806161 0.99657560 113.48239203 |
| 29785 | | Axis 0.04299451 -0.02059510 -0.99886301 |
| 29786 | | Axis point 191.78983766 134.87081926 0.00000000 |
| 29787 | | Rotation angle (degrees) 120.44817291 |
| 29788 | | Shift along axis -113.78600849 |
| 29789 | | |
| 29790 | | |
| 29791 | | > view matrix models |
| 29792 | | > #25.2,-0.52732,0.84847,-0.04497,279.39,-0.84721,-0.52908,-0.047938,487.91,-0.064467,0.01282,0.99784,232.87 |
| 29793 | | |
| 29794 | | > fitmap #25.2 inMap #1 |
| 29795 | | |
| 29796 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map |
| 29797 | | postprocess_20231221.mrc (#1) using 3198 atoms |
| 29798 | | average map value = 0.004716, steps = 2000 |
| 29799 | | shifted from previous position = 1.33 |
| 29800 | | rotated from previous position = 3.97 degrees |
| 29801 | | atoms outside contour = 1306, contour level = 0.0030713 |
| 29802 | | |
| 29803 | | Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to |
| 29804 | | postprocess_20231221.mrc (#1) coordinates: |
| 29805 | | Matrix rotation and translation |
| 29806 | | -0.49998814 0.86167462 -0.08676811 167.17452842 |
| 29807 | | -0.86494971 -0.50185844 0.00029869 370.68848982 |
| 29808 | | -0.04328793 0.07519939 0.99622848 113.29837933 |
| 29809 | | Axis 0.04332538 -0.02515057 -0.99874439 |
| 29810 | | Axis point 191.95191307 134.34120970 0.00000000 |
| 29811 | | Rotation angle (degrees) 120.18601978 |
| 29812 | | Shift along axis -115.23624630 |
| 29813 | | |
| 29814 | | |
| 29815 | | > fitmap #25.2 inMap #1 |
| 29816 | | |
| 29817 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map |
| 29818 | | postprocess_20231221.mrc (#1) using 3198 atoms |
| 29819 | | average map value = 0.00482, steps = 1460 |
| 29820 | | shifted from previous position = 1.17 |
| 29821 | | rotated from previous position = 0.568 degrees |
| 29822 | | atoms outside contour = 1142, contour level = 0.0030713 |
| 29823 | | |
| 29824 | | Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to |
| 29825 | | postprocess_20231221.mrc (#1) coordinates: |
| 29826 | | Matrix rotation and translation |
| 29827 | | -0.49481135 0.86517107 -0.08149067 165.44107902 |
| 29828 | | -0.86826309 -0.49607509 0.00535787 369.30747054 |
| 29829 | | -0.03579002 0.07340647 0.99665970 111.47256480 |
| 29830 | | Axis 0.03921271 -0.02633480 -0.99888380 |
| 29831 | | Axis point 191.17291252 133.88464128 0.00000000 |
| 29832 | | Rotation angle (degrees) 119.80920530 |
| 29833 | | Shift along axis -114.58638455 |
| 29834 | | |
| 29835 | | |
| 29836 | | > fitmap #25.2 inMap #1 |
| 29837 | | |
| 29838 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map |
| 29839 | | postprocess_20231221.mrc (#1) using 3198 atoms |
| 29840 | | average map value = 0.00482, steps = 284 |
| 29841 | | shifted from previous position = 0.0185 |
| 29842 | | rotated from previous position = 0.0285 degrees |
| 29843 | | atoms outside contour = 1142, contour level = 0.0030713 |
| 29844 | | |
| 29845 | | Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to |
| 29846 | | postprocess_20231221.mrc (#1) coordinates: |
| 29847 | | Matrix rotation and translation |
| 29848 | | -0.49470936 0.86523406 -0.08144115 165.39792504 |
| 29849 | | -0.86833929 -0.49593640 0.00582651 369.24411712 |
| 29850 | | -0.03534834 0.07360098 0.99666111 111.39932371 |
| 29851 | | Axis 0.03905162 -0.02655866 -0.99888418 |
| 29852 | | Axis point 191.13185436 133.85100747 0.00000000 |
| 29853 | | Rotation angle (degrees) 119.80121255 |
| 29854 | | Shift along axis -114.62259411 |
| 29855 | | |
| 29856 | | |
| 29857 | | > fitmap #25.2 inMap #1 |
| 29858 | | |
| 29859 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map |
| 29860 | | postprocess_20231221.mrc (#1) using 3198 atoms |
| 29861 | | average map value = 0.004746, steps = 2000 |
| 29862 | | shifted from previous position = 0.694 |
| 29863 | | rotated from previous position = 0.66 degrees |
| 29864 | | atoms outside contour = 1128, contour level = 0.0030713 |
| 29865 | | |
| 29866 | | Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to |
| 29867 | | postprocess_20231221.mrc (#1) coordinates: |
| 29868 | | Matrix rotation and translation |
| 29869 | | -0.49256507 0.86546488 -0.09137930 166.00008670 |
| 29870 | | -0.86954869 -0.49372383 0.01103833 368.07811210 |
| 29871 | | -0.03556285 0.08489585 0.99575497 110.89448300 |
| 29872 | | Axis 0.04250837 -0.03212492 -0.99857951 |
| 29873 | | Axis point 191.35857281 132.53582797 0.00000000 |
| 29874 | | Rotation angle (degrees) 119.68735605 |
| 29875 | | Shift along axis -115.50504323 |
| 29876 | | |
| 29877 | | |
| 29878 | | > fitmap #25.2 inMap #1 |
| 29879 | | |
| 29880 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map |
| 29881 | | postprocess_20231221.mrc (#1) using 3198 atoms |
| 29882 | | average map value = 0.004821, steps = 780 |
| 29883 | | shifted from previous position = 0.714 |
| 29884 | | rotated from previous position = 0.668 degrees |
| 29885 | | atoms outside contour = 1143, contour level = 0.0030713 |
| 29886 | | |
| 29887 | | Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to |
| 29888 | | postprocess_20231221.mrc (#1) coordinates: |
| 29889 | | Matrix rotation and translation |
| 29890 | | -0.49491778 0.86510217 -0.08157577 165.47325028 |
| 29891 | | -0.86820239 -0.49618068 0.00541596 369.31835657 |
| 29892 | | -0.03579097 0.07350473 0.99665242 111.47245341 |
| 29893 | | Axis 0.03923870 -0.02638520 -0.99888145 |
| 29894 | | Axis point 191.17660800 133.88399063 0.00000000 |
| 29895 | | Rotation angle (degrees) 119.81644617 |
| 29896 | | Shift along axis -114.59935024 |
| 29897 | | |
| 29898 | | |
| 29899 | | > fitmap #25.2 inMap #1 |
| 29900 | | |
| 29901 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map |
| 29902 | | postprocess_20231221.mrc (#1) using 3198 atoms |
| 29903 | | average map value = 0.004821, steps = 64 |
| 29904 | | shifted from previous position = 0.0131 |
| 29905 | | rotated from previous position = 0.0221 degrees |
| 29906 | | atoms outside contour = 1139, contour level = 0.0030713 |
| 29907 | | |
| 29908 | | Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to |
| 29909 | | postprocess_20231221.mrc (#1) coordinates: |
| 29910 | | Matrix rotation and translation |
| 29911 | | -0.49481708 0.86518268 -0.08133249 165.41686729 |
| 29912 | | -0.86827439 -0.49605177 0.00567551 369.28671394 |
| 29913 | | -0.03543477 0.07342726 0.99667086 111.44218595 |
| 29914 | | Axis 0.03904127 -0.02644811 -0.99888752 |
| 29915 | | Axis point 191.14217122 133.87985316 0.00000000 |
| 29916 | | Rotation angle (degrees) 119.80825626 |
| 29917 | | Shift along axis -114.62705853 |
| 29918 | | |
| 29919 | | |
| 29920 | | > fitmap #25.2 inMap #1 |
| 29921 | | |
| 29922 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map |
| 29923 | | postprocess_20231221.mrc (#1) using 3198 atoms |
| 29924 | | average map value = 0.004764, steps = 2000 |
| 29925 | | shifted from previous position = 0.359 |
| 29926 | | rotated from previous position = 1.01 degrees |
| 29927 | | atoms outside contour = 1207, contour level = 0.0030713 |
| 29928 | | |
| 29929 | | Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to |
| 29930 | | postprocess_20231221.mrc (#1) coordinates: |
| 29931 | | Matrix rotation and translation |
| 29932 | | -0.50510844 0.85913549 -0.08216852 167.75724459 |
| 29933 | | -0.86177597 -0.50725145 -0.00617524 370.89827941 |
| 29934 | | -0.04698546 0.06769169 0.99659931 113.55791641 |
| 29935 | | Axis 0.04287471 -0.02042136 -0.99887173 |
| 29936 | | Axis point 191.71488637 134.92029494 0.00000000 |
| 29937 | | Rotation angle (degrees) 120.52273971 |
| 29938 | | Shift along axis -113.81149688 |
| 29939 | | |
| 29940 | | |
| 29941 | | > fitmap #25.2 inMap #1 |
| 29942 | | |
| 29943 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map |
| 29944 | | postprocess_20231221.mrc (#1) using 3198 atoms |
| 29945 | | average map value = 0.004769, steps = 2000 |
| 29946 | | shifted from previous position = 0.932 |
| 29947 | | rotated from previous position = 2.1 degrees |
| 29948 | | atoms outside contour = 1231, contour level = 0.0030713 |
| 29949 | | |
| 29950 | | Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to |
| 29951 | | postprocess_20231221.mrc (#1) coordinates: |
| 29952 | | Matrix rotation and translation |
| 29953 | | -0.48810056 0.86985764 -0.07145288 162.94544324 |
| 29954 | | -0.87262846 -0.48793578 0.02093378 367.84554135 |
| 29955 | | -0.01665501 0.07256960 0.99722427 108.46520732 |
| 29956 | | Axis 0.02960580 -0.03141878 -0.99906774 |
| 29957 | | Axis point 189.80852921 133.47148642 0.00000000 |
| 29958 | | Rotation angle (degrees) 119.30154973 |
| 29959 | | Shift along axis -115.09721800 |
| 29960 | | |
| 29961 | | |
| 29962 | | > fitmap #25.2 inMap #1 |
| 29963 | | |
| 29964 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map |
| 29965 | | postprocess_20231221.mrc (#1) using 3198 atoms |
| 29966 | | average map value = 0.004649, steps = 2000 |
| 29967 | | shifted from previous position = 1.27 |
| 29968 | | rotated from previous position = 1.18 degrees |
| 29969 | | atoms outside contour = 1118, contour level = 0.0030713 |
| 29970 | | |
| 29971 | | Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to |
| 29972 | | postprocess_20231221.mrc (#1) coordinates: |
| 29973 | | Matrix rotation and translation |
| 29974 | | -0.49420295 0.86552472 -0.08142722 165.10368776 |
| 29975 | | -0.86860495 -0.49547861 0.00513516 368.74739200 |
| 29976 | | -0.03590084 0.07326590 0.99666605 110.61360921 |
| 29977 | | Axis 0.03924436 -0.02622390 -0.99888547 |
| 29978 | | Axis point 190.92237643 133.68971650 0.00000000 |
| 29979 | | Rotation angle (degrees) 119.76922245 |
| 29980 | | Shift along axis -113.68093322 |
| 29981 | | |
| 29982 | | |
| 29983 | | > fitmap #25.2 inMap #1 |
| 29984 | | |
| 29985 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map |
| 29986 | | postprocess_20231221.mrc (#1) using 3198 atoms |
| 29987 | | average map value = 0.004761, steps = 2000 |
| 29988 | | shifted from previous position = 1.18 |
| 29989 | | rotated from previous position = 0.58 degrees |
| 29990 | | atoms outside contour = 1134, contour level = 0.0030713 |
| 29991 | | |
| 29992 | | Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to |
| 29993 | | postprocess_20231221.mrc (#1) coordinates: |
| 29994 | | Matrix rotation and translation |
| 29995 | | -0.49092819 0.86696017 -0.08584618 164.92126958 |
| 29996 | | -0.87065608 -0.49171552 0.01318449 367.99085791 |
| 29997 | | -0.03078148 0.08121514 0.99622115 110.40135658 |
| 29998 | | Axis 0.03910214 -0.03164967 -0.99873386 |
| 29999 | | Axis point 190.88331822 132.82886345 0.00000000 |
| 30000 | | Rotation angle (degrees) 119.55186916 |
| 30001 | | Shift along axis -115.45958874 |
| 30002 | | |
| 30003 | | |
| 30004 | | > fitmap #25.2 inMap #1 |
| 30005 | | |
| 30006 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map |
| 30007 | | postprocess_20231221.mrc (#1) using 3198 atoms |
| 30008 | | average map value = 0.004749, steps = 2000 |
| 30009 | | shifted from previous position = 0.2 |
| 30010 | | rotated from previous position = 0.26 degrees |
| 30011 | | atoms outside contour = 1125, contour level = 0.0030713 |
| 30012 | | |
| 30013 | | Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to |
| 30014 | | postprocess_20231221.mrc (#1) coordinates: |
| 30015 | | Matrix rotation and translation |
| 30016 | | -0.49206589 0.86591460 -0.08979457 165.67929543 |
| 30017 | | -0.86988864 -0.49310893 0.01171904 368.04099763 |
| 30018 | | -0.03413081 0.08387782 0.99589135 110.75434375 |
| 30019 | | Axis 0.04151365 -0.03202390 -0.99862460 |
| 30020 | | Axis point 191.21549454 132.61304680 0.00000000 |
| 30021 | | Rotation angle (degrees) 119.64612847 |
| 30022 | | Shift along axis -115.51016963 |
| 30023 | | |
| 30024 | | |
| 30025 | | > fitmap #25.2 inMap #1 |
| 30026 | | |
| 30027 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map |
| 30028 | | postprocess_20231221.mrc (#1) using 3198 atoms |
| 30029 | | average map value = 0.004821, steps = 1348 |
| 30030 | | shifted from previous position = 0.679 |
| 30031 | | rotated from previous position = 0.63 degrees |
| 30032 | | atoms outside contour = 1142, contour level = 0.0030713 |
| 30033 | | |
| 30034 | | Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to |
| 30035 | | postprocess_20231221.mrc (#1) coordinates: |
| 30036 | | Matrix rotation and translation |
| 30037 | | -0.49459935 0.86532014 -0.08119434 165.36859381 |
| 30038 | | -0.86839978 -0.49583294 0.00561293 369.28123388 |
| 30039 | | -0.03540185 0.07328530 0.99668248 111.41325860 |
| 30040 | | Axis 0.03898977 -0.02638357 -0.99889124 |
| 30041 | | Axis point 191.14669718 133.88281268 0.00000000 |
| 30042 | | Rotation angle (degrees) 119.79346036 |
| 30043 | | Shift along axis -114.58500103 |
| 30044 | | |
| 30045 | | |
| 30046 | | > fitmap #25.2 inMap #1 |
| 30047 | | |
| 30048 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map |
| 30049 | | postprocess_20231221.mrc (#1) using 3198 atoms |
| 30050 | | average map value = 0.004768, steps = 2000 |
| 30051 | | shifted from previous position = 0.809 |
| 30052 | | rotated from previous position = 1.18 degrees |
| 30053 | | atoms outside contour = 1233, contour level = 0.0030713 |
| 30054 | | |
| 30055 | | Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to |
| 30056 | | postprocess_20231221.mrc (#1) coordinates: |
| 30057 | | Matrix rotation and translation |
| 30058 | | -0.48800487 0.86993760 -0.07113230 162.89402781 |
| 30059 | | -0.87268732 -0.48782476 0.02106729 367.83006280 |
| 30060 | | -0.01637287 0.07235719 0.99724438 108.42625211 |
| 30061 | | Axis 0.02940531 -0.03139445 -0.99907443 |
| 30062 | | Axis point 189.78296479 133.48069498 0.00000000 |
| 30063 | | Rotation angle (degrees) 119.29409879 |
| 30064 | | Shift along axis -115.08376766 |
| 30065 | | |
| 30066 | | |
| 30067 | | > view matrix models |
| 30068 | | > #25.2,-0.53208,0.84559,-0.043089,279.75,-0.84349,-0.53381,-0.059738,489.8,-0.073515,0.004559,0.99728,234.33 |
| 30069 | | |
| 30070 | | > fitmap #25.2 inMap #1 |
| 30071 | | |
| 30072 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map |
| 30073 | | postprocess_20231221.mrc (#1) using 3198 atoms |
| 30074 | | average map value = 0.004631, steps = 2000 |
| 30075 | | shifted from previous position = 1.18 |
| 30076 | | rotated from previous position = 5.05 degrees |
| 30077 | | atoms outside contour = 1147, contour level = 0.0030713 |
| 30078 | | |
| 30079 | | Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to |
| 30080 | | postprocess_20231221.mrc (#1) coordinates: |
| 30081 | | Matrix rotation and translation |
| 30082 | | -0.48815171 0.86762043 -0.09456580 165.62279976 |
| 30083 | | -0.87118662 -0.49090427 -0.00684532 370.03919003 |
| 30084 | | -0.05236190 0.07904290 0.99549507 112.85429778 |
| 30085 | | Axis 0.04932028 -0.02423508 -0.99848894 |
| 30086 | | Axis point 192.95003348 133.60578009 0.00000000 |
| 30087 | | Rotation angle (degrees) 119.45767326 |
| 30088 | | Shift along axis -113.48313585 |
| 30089 | | |
| 30090 | | |
| 30091 | | > fitmap #25.2 inMap #1 |
| 30092 | | |
| 30093 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map |
| 30094 | | postprocess_20231221.mrc (#1) using 3198 atoms |
| 30095 | | average map value = 0.004719, steps = 2000 |
| 30096 | | shifted from previous position = 1.54 |
| 30097 | | rotated from previous position = 1.34 degrees |
| 30098 | | atoms outside contour = 1179, contour level = 0.0030713 |
| 30099 | | |
| 30100 | | Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to |
| 30101 | | postprocess_20231221.mrc (#1) coordinates: |
| 30102 | | Matrix rotation and translation |
| 30103 | | -0.50656202 0.85664740 -0.09772482 169.61094538 |
| 30104 | | -0.86000131 -0.51010794 -0.01369808 371.28799353 |
| 30105 | | -0.06158463 0.07710455 0.99511919 115.79424995 |
| 30106 | | Axis 0.05280977 -0.02101872 -0.99838336 |
| 30107 | | Axis point 192.99506333 134.36543524 0.00000000 |
| 30108 | | Rotation angle (degrees) 120.71549142 |
| 30109 | | Shift along axis -114.45393709 |
| 30110 | | |
| 30111 | | |
| 30112 | | > fitmap #25.2 inMap #1 |
| 30113 | | |
| 30114 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map |
| 30115 | | postprocess_20231221.mrc (#1) using 3198 atoms |
| 30116 | | average map value = 0.004768, steps = 2000 |
| 30117 | | shifted from previous position = 1.41 |
| 30118 | | rotated from previous position = 1.12 degrees |
| 30119 | | atoms outside contour = 1211, contour level = 0.0030713 |
| 30120 | | |
| 30121 | | Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to |
| 30122 | | postprocess_20231221.mrc (#1) coordinates: |
| 30123 | | Matrix rotation and translation |
| 30124 | | -0.50197269 0.86100337 -0.08183276 167.17027116 |
| 30125 | | -0.86368653 -0.50400525 -0.00492678 370.78555390 |
| 30126 | | -0.04548612 0.06820474 0.99663389 113.17870968 |
| 30127 | | Axis 0.04235525 -0.02105072 -0.99888082 |
| 30128 | | Axis point 191.78578620 134.80515999 0.00000000 |
| 30129 | | Rotation angle (degrees) 120.30958336 |
| 30130 | | Shift along axis -113.77680632 |
| 30131 | | |
| 30132 | | |
| 30133 | | > fitmap #25.2 inMap #1 |
| 30134 | | |
| 30135 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map |
| 30136 | | postprocess_20231221.mrc (#1) using 3198 atoms |
| 30137 | | average map value = 0.00482, steps = 1560 |
| 30138 | | shifted from previous position = 0.399 |
| 30139 | | rotated from previous position = 0.787 degrees |
| 30140 | | atoms outside contour = 1141, contour level = 0.0030713 |
| 30141 | | |
| 30142 | | Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to |
| 30143 | | postprocess_20231221.mrc (#1) coordinates: |
| 30144 | | Matrix rotation and translation |
| 30145 | | -0.49484515 0.86513945 -0.08162107 165.45679030 |
| 30146 | | -0.86824047 -0.49611484 0.00534265 369.29931336 |
| 30147 | | -0.03587129 0.07351050 0.99664911 111.47595487 |
| 30148 | | Axis 0.03928252 -0.02636384 -0.99888029 |
| 30149 | | Axis point 191.17583080 133.87458033 0.00000000 |
| 30150 | | Rotation angle (degrees) 119.81198347 |
| 30151 | | Shift along axis -114.58772451 |
| 30152 | | |
| 30153 | | |
| 30154 | | > fitmap #25.2 inMap #1 |
| 30155 | | |
| 30156 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map |
| 30157 | | postprocess_20231221.mrc (#1) using 3198 atoms |
| 30158 | | average map value = 0.004821, steps = 512 |
| 30159 | | shifted from previous position = 0.0301 |
| 30160 | | rotated from previous position = 0.0216 degrees |
| 30161 | | atoms outside contour = 1144, contour level = 0.0030713 |
| 30162 | | |
| 30163 | | Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to |
| 30164 | | postprocess_20231221.mrc (#1) coordinates: |
| 30165 | | Matrix rotation and translation |
| 30166 | | -0.49493164 0.86512442 -0.08125513 165.42697493 |
| 30167 | | -0.86819945 -0.49618631 0.00537170 369.32678383 |
| 30168 | | -0.03567049 0.07320428 0.99667885 111.47713848 |
| 30169 | | Axis 0.03909097 -0.02626979 -0.99889028 |
| 30170 | | Axis point 191.15121103 133.91325672 0.00000000 |
| 30171 | | Rotation angle (degrees) 119.81621672 |
| 30172 | | Shift along axis -114.58886669 |
| 30173 | | |
| 30174 | | |
| 30175 | | > fitmap #25.2 inMap #1 |
| 30176 | | |
| 30177 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map |
| 30178 | | postprocess_20231221.mrc (#1) using 3198 atoms |
| 30179 | | average map value = 0.004735, steps = 2000 |
| 30180 | | shifted from previous position = 0.966 |
| 30181 | | rotated from previous position = 1.37 degrees |
| 30182 | | atoms outside contour = 1148, contour level = 0.0030713 |
| 30183 | | |
| 30184 | | Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to |
| 30185 | | postprocess_20231221.mrc (#1) coordinates: |
| 30186 | | Matrix rotation and translation |
| 30187 | | -0.50248574 0.85925464 -0.09586205 168.60347666 |
| 30188 | | -0.86269476 -0.50562413 -0.01009856 370.75051195 |
| 30189 | | -0.05714740 0.07762530 0.99534340 114.76512812 |
| 30190 | | Axis 0.05086571 -0.02244826 -0.99845318 |
| 30191 | | Axis point 192.76925102 134.08584606 0.00000000 |
| 30192 | | Rotation angle (degrees) 120.42321792 |
| 30193 | | Shift along axis -114.33417459 |
| 30194 | | |
| 30195 | | |
| 30196 | | > select subtract #25.2 |
| 30197 | | |
| 30198 | | Nothing selected |
| 30199 | | |
| 30200 | | > hide #!25.2 models |
| 30201 | | |
| 30202 | | > show #25.3 models |
| 30203 | | |
| 30204 | | > hide #4 models |
| 30205 | | |
| 30206 | | > show #7 models |
| 30207 | | |
| 30208 | | > hide #7 models |
| 30209 | | |
| 30210 | | > show #7 models |
| 30211 | | |
| 30212 | | > hide #7 models |
| 30213 | | |
| 30214 | | > show #7 models |
| 30215 | | |
| 30216 | | > select add #7 |
| 30217 | | |
| 30218 | | 7214 atoms, 7373 bonds, 905 residues, 1 model selected |
| 30219 | | |
| 30220 | | > fitmap #25.3 inMap #1 |
| 30221 | | |
| 30222 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map |
| 30223 | | postprocess_20231221.mrc (#1) using 3371 atoms |
| 30224 | | average map value = 0.004368, steps = 60 |
| 30225 | | shifted from previous position = 2.07 |
| 30226 | | rotated from previous position = 7.06 degrees |
| 30227 | | atoms outside contour = 978, contour level = 0.0030713 |
| 30228 | | |
| 30229 | | Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to |
| 30230 | | postprocess_20231221.mrc (#1) coordinates: |
| 30231 | | Matrix rotation and translation |
| 30232 | | -0.47545733 0.87640103 -0.07656081 158.51716871 |
| 30233 | | -0.87857427 -0.47750275 -0.00991786 369.90335293 |
| 30234 | | -0.04525002 0.06254884 0.99701558 112.99556207 |
| 30235 | | Axis 0.04125043 -0.01782314 -0.99898986 |
| 30236 | | Axis point 191.02269376 135.40608677 0.00000000 |
| 30237 | | Rotation angle (degrees) 118.55305011 |
| 30238 | | Shift along axis -112.93535652 |
| 30239 | | |
| 30240 | | |
| 30241 | | > view matrix models |
| 30242 | | > #7,-0.36432,-0.067161,-0.92885,297.27,0.22543,-0.97409,-0.017987,296.83,-0.90358,-0.21594,0.37002,346.7 |
| 30243 | | |
| 30244 | | > fitmap #25.3 inMap #1 |
| 30245 | | |
| 30246 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map |
| 30247 | | postprocess_20231221.mrc (#1) using 3371 atoms |
| 30248 | | average map value = 0.004368, steps = 64 |
| 30249 | | shifted from previous position = 0.00767 |
| 30250 | | rotated from previous position = 0.0173 degrees |
| 30251 | | atoms outside contour = 979, contour level = 0.0030713 |
| 30252 | | |
| 30253 | | Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to |
| 30254 | | postprocess_20231221.mrc (#1) coordinates: |
| 30255 | | Matrix rotation and translation |
| 30256 | | -0.47532870 0.87644996 -0.07679897 158.52680230 |
| 30257 | | -0.87864353 -0.47737760 -0.00980606 369.88315964 |
| 30258 | | -0.04525663 0.06281782 0.99699837 112.96036915 |
| 30259 | | Axis 0.04133688 -0.01795363 -0.99898395 |
| 30260 | | Axis point 191.03872860 135.37544611 0.00000000 |
| 30261 | | Rotation angle (degrees) 118.54533465 |
| 30262 | | Shift along axis -112.93333754 |
| 30263 | | |
| 30264 | | |
| 30265 | | > fitmap #25.3 inMap #1 |
| 30266 | | |
| 30267 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map |
| 30268 | | postprocess_20231221.mrc (#1) using 3371 atoms |
| 30269 | | average map value = 0.004368, steps = 48 |
| 30270 | | shifted from previous position = 0.0552 |
| 30271 | | rotated from previous position = 0.0291 degrees |
| 30272 | | atoms outside contour = 979, contour level = 0.0030713 |
| 30273 | | |
| 30274 | | Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to |
| 30275 | | postprocess_20231221.mrc (#1) coordinates: |
| 30276 | | Matrix rotation and translation |
| 30277 | | -0.47523174 0.87646484 -0.07722804 158.59065575 |
| 30278 | | -0.87869684 -0.47728443 -0.00956120 369.81255513 |
| 30279 | | -0.04523979 0.06331625 0.99696760 112.93527431 |
| 30280 | | Axis 0.04147916 -0.01820653 -0.99897347 |
| 30281 | | Axis point 191.06092423 135.29625759 0.00000000 |
| 30282 | | Rotation angle (degrees) 118.54013797 |
| 30283 | | Shift along axis -112.97414056 |
| 30284 | | |
| 30285 | | |
| 30286 | | > view matrix models |
| 30287 | | > #7,-0.18466,-0.061928,-0.98085,300.57,-0.28631,-0.95134,0.11397,287.8,-0.94018,0.30187,0.15794,351.03 |
| 30288 | | |
| 30289 | | > fitmap #25.3 inMap #1 |
| 30290 | | |
| 30291 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map |
| 30292 | | postprocess_20231221.mrc (#1) using 3371 atoms |
| 30293 | | average map value = 0.004368, steps = 60 |
| 30294 | | shifted from previous position = 0.0165 |
| 30295 | | rotated from previous position = 0.00533 degrees |
| 30296 | | atoms outside contour = 978, contour level = 0.0030713 |
| 30297 | | |
| 30298 | | Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to |
| 30299 | | postprocess_20231221.mrc (#1) coordinates: |
| 30300 | | Matrix rotation and translation |
| 30301 | | -0.47530223 0.87643103 -0.07717786 158.59298727 |
| 30302 | | -0.87865977 -0.47735271 -0.00955947 369.82530316 |
| 30303 | | -0.04521928 0.06326945 0.99697150 112.92595021 |
| 30304 | | Axis 0.04145327 -0.01819041 -0.99897484 |
| 30305 | | Axis point 191.05511213 135.30825161 0.00000000 |
| 30306 | | Rotation angle (degrees) 118.54453621 |
| 30307 | | Shift along axis -112.96325958 |
| 30308 | | |
| 30309 | | |
| 30310 | | > fitmap #25.3 inMap #1 |
| 30311 | | |
| 30312 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map |
| 30313 | | postprocess_20231221.mrc (#1) using 3371 atoms |
| 30314 | | average map value = 0.004368, steps = 48 |
| 30315 | | shifted from previous position = 0.0466 |
| 30316 | | rotated from previous position = 0.0305 degrees |
| 30317 | | atoms outside contour = 977, contour level = 0.0030713 |
| 30318 | | |
| 30319 | | Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to |
| 30320 | | postprocess_20231221.mrc (#1) coordinates: |
| 30321 | | Matrix rotation and translation |
| 30322 | | -0.47532057 0.87645827 -0.07675451 158.51183318 |
| 30323 | | -0.87864577 -0.47737198 -0.00987840 369.89939667 |
| 30324 | | -0.04529846 0.06274462 0.99700108 112.97741102 |
| 30325 | | Axis 0.04133618 -0.01790442 -0.99898486 |
| 30326 | | Axis point 191.03910614 135.39019927 0.00000000 |
| 30327 | | Rotation angle (degrees) 118.54479799 |
| 30328 | | Shift along axis -112.93328385 |
| 30329 | | |
| 30330 | | |
| 30331 | | > fitmap #25.3 inMap #1 |
| 30332 | | |
| 30333 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map |
| 30334 | | postprocess_20231221.mrc (#1) using 3371 atoms |
| 30335 | | average map value = 0.004368, steps = 76 |
| 30336 | | shifted from previous position = 0.0517 |
| 30337 | | rotated from previous position = 0.0235 degrees |
| 30338 | | atoms outside contour = 976, contour level = 0.0030713 |
| 30339 | | |
| 30340 | | Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to |
| 30341 | | postprocess_20231221.mrc (#1) coordinates: |
| 30342 | | Matrix rotation and translation |
| 30343 | | -0.47523483 0.87647428 -0.07710170 158.56597258 |
| 30344 | | -0.87869259 -0.47728974 -0.00968672 369.83604006 |
| 30345 | | -0.04529001 0.06314522 0.99697617 112.95918118 |
| 30346 | | Axis 0.04145326 -0.01810604 -0.99897638 |
| 30347 | | Axis point 191.05770751 135.32190842 0.00000000 |
| 30348 | | Rotation angle (degrees) 118.54013231 |
| 30349 | | Shift along axis -112.96674420 |
| 30350 | | |
| 30351 | | |
| 30352 | | > fitmap #25.3 inMap #1 |
| 30353 | | |
| 30354 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map |
| 30355 | | postprocess_20231221.mrc (#1) using 3371 atoms |
| 30356 | | average map value = 0.004368, steps = 60 |
| 30357 | | shifted from previous position = 0.0425 |
| 30358 | | rotated from previous position = 0.0182 degrees |
| 30359 | | atoms outside contour = 978, contour level = 0.0030713 |
| 30360 | | |
| 30361 | | Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to |
| 30362 | | postprocess_20231221.mrc (#1) coordinates: |
| 30363 | | Matrix rotation and translation |
| 30364 | | -0.47534774 0.87643769 -0.07682111 158.53698924 |
| 30365 | | -0.87863438 -0.47739524 -0.00976706 369.87784034 |
| 30366 | | -0.04523426 0.06285491 0.99699705 112.95396532 |
| 30367 | | Axis 0.04133628 -0.01797917 -0.99898351 |
| 30368 | | Axis point 191.03855454 135.36953188 0.00000000 |
| 30369 | | Rotation angle (degrees) 118.54657438 |
| 30370 | | Shift along axis -112.93591686 |
| 30371 | | |
| 30372 | | |
| 30373 | | > fitmap #25.3 inMap #1 |
| 30374 | | |
| 30375 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map |
| 30376 | | postprocess_20231221.mrc (#1) using 3371 atoms |
| 30377 | | average map value = 0.004368, steps = 60 |
| 30378 | | shifted from previous position = 0.00591 |
| 30379 | | rotated from previous position = 0.012 degrees |
| 30380 | | atoms outside contour = 979, contour level = 0.0030713 |
| 30381 | | |
| 30382 | | Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to |
| 30383 | | postprocess_20231221.mrc (#1) coordinates: |
| 30384 | | Matrix rotation and translation |
| 30385 | | -0.47542699 0.87640826 -0.07666634 158.52781577 |
| 30386 | | -0.87859017 -0.47747440 -0.00987431 369.89735913 |
| 30387 | | -0.04526014 0.06266377 0.99700790 112.98110921 |
| 30388 | | Axis 0.04129042 -0.01787716 -0.99898724 |
| 30389 | | Axis point 191.03030121 135.39393921 0.00000000 |
| 30390 | | Rotation angle (degrees) 118.55138644 |
| 30391 | | Shift along axis -112.93372065 |
| 30392 | | |
| 30393 | | |
| 30394 | | > fitmap #25.3 inMap #1 |
| 30395 | | |
| 30396 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map |
| 30397 | | postprocess_20231221.mrc (#1) using 3371 atoms |
| 30398 | | average map value = 0.004368, steps = 64 |
| 30399 | | shifted from previous position = 0.0208 |
| 30400 | | rotated from previous position = 0.0226 degrees |
| 30401 | | atoms outside contour = 975, contour level = 0.0030713 |
| 30402 | | |
| 30403 | | Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to |
| 30404 | | postprocess_20231221.mrc (#1) coordinates: |
| 30405 | | Matrix rotation and translation |
| 30406 | | -0.47526491 0.87649565 -0.07667224 158.48228974 |
| 30407 | | -0.87866184 -0.47733488 -0.01023597 369.94394497 |
| 30408 | | -0.04557011 0.06250417 0.99700380 113.06380899 |
| 30409 | | Axis 0.04140162 -0.01770244 -0.99898575 |
| 30410 | | Axis point 191.05651983 135.42671950 0.00000000 |
| 30411 | | Rotation angle (degrees) 118.54168418 |
| 30412 | | Shift along axis -112.93662236 |
| 30413 | | |
| 30414 | | |
| 30415 | | > view matrix models |
| 30416 | | > #7,-0.28866,-0.11227,-0.95083,298.71,-0.30709,-0.92977,0.20301,285.33,-0.90684,0.3506,0.23392,349.46 |
| 30417 | | |
| 30418 | | > fitmap #25.3 inMap #1 |
| 30419 | | |
| 30420 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map |
| 30421 | | postprocess_20231221.mrc (#1) using 3371 atoms |
| 30422 | | average map value = 0.004368, steps = 48 |
| 30423 | | shifted from previous position = 0.0526 |
| 30424 | | rotated from previous position = 0.0308 degrees |
| 30425 | | atoms outside contour = 974, contour level = 0.0030713 |
| 30426 | | |
| 30427 | | Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to |
| 30428 | | postprocess_20231221.mrc (#1) coordinates: |
| 30429 | | Matrix rotation and translation |
| 30430 | | -0.47495325 0.87662798 -0.07708953 158.50383441 |
| 30431 | | -0.87881880 -0.47704477 -0.01028609 369.91372761 |
| 30432 | | -0.04579223 0.06286231 0.99697111 113.09251968 |
| 30433 | | Axis 0.04162666 -0.01781040 -0.99897448 |
| 30434 | | Axis point 191.10946912 135.37243598 0.00000000 |
| 30435 | | Rotation angle (degrees) 118.52312738 |
| 30436 | | Shift along axis -112.96686564 |
| 30437 | | |
| 30438 | | |
| 30439 | | > fitmap #25.3 inMap #1 |
| 30440 | | |
| 30441 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map |
| 30442 | | postprocess_20231221.mrc (#1) using 3371 atoms |
| 30443 | | average map value = 0.004368, steps = 44 |
| 30444 | | shifted from previous position = 0.0526 |
| 30445 | | rotated from previous position = 0.0368 degrees |
| 30446 | | atoms outside contour = 979, contour level = 0.0030713 |
| 30447 | | |
| 30448 | | Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to |
| 30449 | | postprocess_20231221.mrc (#1) coordinates: |
| 30450 | | Matrix rotation and translation |
| 30451 | | -0.47535997 0.87643990 -0.07672018 158.52214584 |
| 30452 | | -0.87862059 -0.47741625 -0.00997899 369.90795329 |
| 30453 | | -0.04537344 0.06266432 0.99700272 113.00354608 |
| 30454 | | Axis 0.04134878 -0.01784265 -0.99898544 |
| 30455 | | Axis point 191.04424832 135.39684200 0.00000000 |
| 30456 | | Rotation angle (degrees) 118.54747320 |
| 30457 | | Shift along axis -112.93433985 |
| 30458 | | |
| 30459 | | |
| 30460 | | > fitmap #25.3 inMap #1 |
| 30461 | | |
| 30462 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map |
| 30463 | | postprocess_20231221.mrc (#1) using 3371 atoms |
| 30464 | | average map value = 0.004368, steps = 76 |
| 30465 | | shifted from previous position = 0.0415 |
| 30466 | | rotated from previous position = 0.0284 degrees |
| 30467 | | atoms outside contour = 976, contour level = 0.0030713 |
| 30468 | | |
| 30469 | | Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to |
| 30470 | | postprocess_20231221.mrc (#1) coordinates: |
| 30471 | | Matrix rotation and translation |
| 30472 | | -0.47524069 0.87647169 -0.07709506 158.56622957 |
| 30473 | | -0.87868942 -0.47729551 -0.00968985 369.83672080 |
| 30474 | | -0.04529000 0.06313760 0.99697665 112.95987184 |
| 30475 | | Axis 0.04145084 -0.01810233 -0.99897654 |
| 30476 | | Axis point 191.05723336 135.32281988 0.00000000 |
| 30477 | | Rotation angle (degrees) 118.54049592 |
| 30478 | | Shift along axis -112.96646428 |
| 30479 | | |
| 30480 | | |
| 30481 | | > fitmap #25.3 inMap #1 |
| 30482 | | |
| 30483 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map |
| 30484 | | postprocess_20231221.mrc (#1) using 3371 atoms |
| 30485 | | average map value = 0.004368, steps = 60 |
| 30486 | | shifted from previous position = 0.0426 |
| 30487 | | rotated from previous position = 0.0168 degrees |
| 30488 | | atoms outside contour = 977, contour level = 0.0030713 |
| 30489 | | |
| 30490 | | Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to |
| 30491 | | postprocess_20231221.mrc (#1) coordinates: |
| 30492 | | Matrix rotation and translation |
| 30493 | | -0.47534798 0.87643644 -0.07683393 158.53933827 |
| 30494 | | -0.87863466 -0.47739506 -0.00975115 369.87593931 |
| 30495 | | -0.04522640 0.06287377 0.99699621 112.95017722 |
| 30496 | | Axis 0.04133797 -0.01799095 -0.99898323 |
| 30497 | | Axis point 191.03875226 135.36720668 0.00000000 |
| 30498 | | Rotation angle (degrees) 118.54660343 |
| 30499 | | Shift along axis -112.93605809 |
| 30500 | | |
| 30501 | | |
| 30502 | | > fitmap #25.3 inMap #1 |
| 30503 | | |
| 30504 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map |
| 30505 | | postprocess_20231221.mrc (#1) using 3371 atoms |
| 30506 | | average map value = 0.004368, steps = 60 |
| 30507 | | shifted from previous position = 0.0467 |
| 30508 | | rotated from previous position = 0.0239 degrees |
| 30509 | | atoms outside contour = 978, contour level = 0.0030713 |
| 30510 | | |
| 30511 | | Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to |
| 30512 | | postprocess_20231221.mrc (#1) coordinates: |
| 30513 | | Matrix rotation and translation |
| 30514 | | -0.47519240 0.87648884 -0.07719767 158.57300363 |
| 30515 | | -0.87871531 -0.47724879 -0.00964283 369.82620699 |
| 30516 | | -0.04529432 0.06325257 0.99696917 112.94962485 |
| 30517 | | Axis 0.04148840 -0.01815778 -0.99897398 |
| 30518 | | Axis point 191.06401223 135.30831728 0.00000000 |
| 30519 | | Rotation angle (degrees) 118.53764154 |
| 30520 | | Shift along axis -112.97001914 |
| 30521 | | |
| 30522 | | |
| 30523 | | > fitmap #25.3 inMap #1 |
| 30524 | | |
| 30525 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map |
| 30526 | | postprocess_20231221.mrc (#1) using 3371 atoms |
| 30527 | | average map value = 0.004368, steps = 48 |
| 30528 | | shifted from previous position = 0.0506 |
| 30529 | | rotated from previous position = 0.0261 degrees |
| 30530 | | atoms outside contour = 979, contour level = 0.0030713 |
| 30531 | | |
| 30532 | | Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to |
| 30533 | | postprocess_20231221.mrc (#1) coordinates: |
| 30534 | | Matrix rotation and translation |
| 30535 | | -0.47531070 0.87646150 -0.07677865 158.52036171 |
| 30536 | | -0.87865558 -0.47735621 -0.00976759 369.87910847 |
| 30537 | | -0.04521168 0.06281934 0.99700031 112.95253245 |
| 30538 | | Axis 0.04131532 -0.01796741 -0.99898459 |
| 30539 | | Axis point 191.03531248 135.37407238 0.00000000 |
| 30540 | | Rotation angle (degrees) 118.54398695 |
| 30541 | | Shift along axis -112.93428991 |
| 30542 | | |
| 30543 | | |
| 30544 | | > fitmap #25.3 inMap #1 |
| 30545 | | |
| 30546 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map |
| 30547 | | postprocess_20231221.mrc (#1) using 3371 atoms |
| 30548 | | average map value = 0.004368, steps = 48 |
| 30549 | | shifted from previous position = 0.0542 |
| 30550 | | rotated from previous position = 0.0257 degrees |
| 30551 | | atoms outside contour = 978, contour level = 0.0030713 |
| 30552 | | |
| 30553 | | Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to |
| 30554 | | postprocess_20231221.mrc (#1) coordinates: |
| 30555 | | Matrix rotation and translation |
| 30556 | | -0.47525371 0.87645634 -0.07718930 158.58846566 |
| 30557 | | -0.87868413 -0.47730708 -0.00959885 369.82029855 |
| 30558 | | -0.04525597 0.06326312 0.99697024 112.94328927 |
| 30559 | | Axis 0.04147089 -0.01817551 -0.99897438 |
| 30560 | | Axis point 191.05980700 135.30412830 0.00000000 |
| 30561 | | Rotation angle (degrees) 118.54150687 |
| 30562 | | Shift along axis -112.97232105 |
| 30563 | | |
| 30564 | | |
| 30565 | | > select subtract #7 |
| 30566 | | |
| 30567 | | Nothing selected |
| 30568 | | |
| 30569 | | > select add #7 |
| 30570 | | |
| 30571 | | 7214 atoms, 7373 bonds, 905 residues, 1 model selected |
| 30572 | | |
| 30573 | | > select subtract #7 |
| 30574 | | |
| 30575 | | Nothing selected |
| 30576 | | |
| 30577 | | > select add #7 |
| 30578 | | |
| 30579 | | 7214 atoms, 7373 bonds, 905 residues, 1 model selected |
| 30580 | | |
| 30581 | | > select subtract #7 |
| 30582 | | |
| 30583 | | Nothing selected |
| 30584 | | |
| 30585 | | > select add #25.3 |
| 30586 | | |
| 30587 | | 3371 atoms, 3370 bonds, 843 residues, 1 model selected |
| 30588 | | |
| 30589 | | > fitmap #25.3 inMap #1 |
| 30590 | | |
| 30591 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map |
| 30592 | | postprocess_20231221.mrc (#1) using 3371 atoms |
| 30593 | | average map value = 0.004368, steps = 48 |
| 30594 | | shifted from previous position = 0.052 |
| 30595 | | rotated from previous position = 0.0219 degrees |
| 30596 | | atoms outside contour = 978, contour level = 0.0030713 |
| 30597 | | |
| 30598 | | Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to |
| 30599 | | postprocess_20231221.mrc (#1) coordinates: |
| 30600 | | Matrix rotation and translation |
| 30601 | | -0.47531155 0.87645449 -0.07685344 158.53312907 |
| 30602 | | -0.87865324 -0.47736051 -0.00976832 369.87749105 |
| 30603 | | -0.04524829 0.06288453 0.99699454 112.95097096 |
| 30604 | | Axis 0.04135298 -0.01798921 -0.99898264 |
| 30605 | | Axis point 191.04202451 135.36723140 0.00000000 |
| 30606 | | Rotation angle (degrees) 118.54434302 |
| 30607 | | Shift along axis -112.93404570 |
| 30608 | | |
| 30609 | | |
| 30610 | | > fitmap #25.3 inMap #1 |
| 30611 | | |
| 30612 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map |
| 30613 | | postprocess_20231221.mrc (#1) using 3371 atoms |
| 30614 | | average map value = 0.004368, steps = 64 |
| 30615 | | shifted from previous position = 0.00761 |
| 30616 | | rotated from previous position = 0.0171 degrees |
| 30617 | | atoms outside contour = 978, contour level = 0.0030713 |
| 30618 | | |
| 30619 | | Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to |
| 30620 | | postprocess_20231221.mrc (#1) coordinates: |
| 30621 | | Matrix rotation and translation |
| 30622 | | -0.47544691 0.87640134 -0.07662189 158.52466536 |
| 30623 | | -0.87858021 -0.47749262 -0.00987876 369.90162500 |
| 30624 | | -0.04524415 0.06262165 0.99701127 112.97927090 |
| 30625 | | Axis 0.04126942 -0.01786116 -0.99898840 |
| 30626 | | Axis point 191.02673411 135.39983726 0.00000000 |
| 30627 | | Rotation angle (degrees) 118.55252039 |
| 30628 | | Shift along axis -112.92963021 |
| 30629 | | |
| 30630 | | |
| 30631 | | > fitmap #25.3 inMap #1 |
| 30632 | | |
| 30633 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map |
| 30634 | | postprocess_20231221.mrc (#1) using 3371 atoms |
| 30635 | | average map value = 0.004368, steps = 48 |
| 30636 | | shifted from previous position = 0.0558 |
| 30637 | | rotated from previous position = 0.0355 degrees |
| 30638 | | atoms outside contour = 975, contour level = 0.0030713 |
| 30639 | | |
| 30640 | | Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to |
| 30641 | | postprocess_20231221.mrc (#1) coordinates: |
| 30642 | | Matrix rotation and translation |
| 30643 | | -0.47526835 0.87645184 -0.07715024 158.58396185 |
| 30644 | | -0.87867573 -0.47732192 -0.00962940 369.82656908 |
| 30645 | | -0.04526520 0.06321349 0.99697297 112.95017554 |
| 30646 | | Axis 0.04146038 -0.01814817 -0.99897532 |
| 30647 | | Axis point 191.05789318 135.31134266 0.00000000 |
| 30648 | | Rotation angle (degrees) 118.54237935 |
| 30649 | | Shift along axis -112.97116325 |
| 30650 | | |
| 30651 | | |
| 30652 | | > fitmap #25.3 inMap #1 |
| 30653 | | |
| 30654 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map |
| 30655 | | postprocess_20231221.mrc (#1) using 3371 atoms |
| 30656 | | average map value = 0.004368, steps = 60 |
| 30657 | | shifted from previous position = 0.00488 |
| 30658 | | rotated from previous position = 0.0013 degrees |
| 30659 | | atoms outside contour = 977, contour level = 0.0030713 |
| 30660 | | |
| 30661 | | Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to |
| 30662 | | postprocess_20231221.mrc (#1) coordinates: |
| 30663 | | Matrix rotation and translation |
| 30664 | | -0.47525820 0.87645883 -0.07713326 158.57888826 |
| 30665 | | -0.87868203 -0.47731049 -0.00962170 369.82738709 |
| 30666 | | -0.04524954 0.06320282 0.99697436 112.94459965 |
| 30667 | | Axis 0.04144962 -0.01814730 -0.99897578 |
| 30668 | | Axis point 191.05650349 135.31307075 0.00000000 |
| 30669 | | Rotation angle (degrees) 118.54163027 |
| 30670 | | Shift along axis -112.96725292 |
| 30671 | | |
| 30672 | | |
| 30673 | | > fitmap #25.3 inMap #1 |
| 30674 | | |
| 30675 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map |
| 30676 | | postprocess_20231221.mrc (#1) using 3371 atoms |
| 30677 | | average map value = 0.004368, steps = 60 |
| 30678 | | shifted from previous position = 0.00445 |
| 30679 | | rotated from previous position = 0.00633 degrees |
| 30680 | | atoms outside contour = 975, contour level = 0.0030713 |
| 30681 | | |
| 30682 | | Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to |
| 30683 | | postprocess_20231221.mrc (#1) coordinates: |
| 30684 | | Matrix rotation and translation |
| 30685 | | -0.47527033 0.87645853 -0.07706200 158.56801263 |
| 30686 | | -0.87867344 -0.47732463 -0.00970424 369.83968258 |
| 30687 | | -0.04528895 0.06310019 0.99697907 112.96447076 |
| 30688 | | Axis 0.04143847 -0.01808443 -0.99897738 |
| 30689 | | Axis point 191.05491510 135.32697136 0.00000000 |
| 30690 | | Rotation angle (degrees) 118.54233328 |
| 30691 | | Shift along axis -112.96647383 |
| 30692 | | |
| 30693 | | |
| 30694 | | > fitmap #25.3 inMap #1 |
| 30695 | | |
| 30696 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map |
| 30697 | | postprocess_20231221.mrc (#1) using 3371 atoms |
| 30698 | | average map value = 0.004368, steps = 60 |
| 30699 | | shifted from previous position = 0.0403 |
| 30700 | | rotated from previous position = 0.0183 degrees |
| 30701 | | atoms outside contour = 979, contour level = 0.0030713 |
| 30702 | | |
| 30703 | | Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to |
| 30704 | | postprocess_20231221.mrc (#1) coordinates: |
| 30705 | | Matrix rotation and translation |
| 30706 | | -0.47533984 0.87644582 -0.07677719 158.52777202 |
| 30707 | | -0.87863714 -0.47738898 -0.00982497 369.88348376 |
| 30708 | | -0.04526364 0.06278909 0.99699986 112.96898440 |
| 30709 | | Axis 0.04133156 -0.01793736 -0.99898446 |
| 30710 | | Axis point 191.03816673 135.37698554 0.00000000 |
| 30711 | | Rotation angle (degrees) 118.54602065 |
| 30712 | | Shift along axis -112.93679257 |
| 30713 | | |
| 30714 | | |
| 30715 | | > fitmap #25.3 inMap #1 |
| 30716 | | |
| 30717 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map |
| 30718 | | postprocess_20231221.mrc (#1) using 3371 atoms |
| 30719 | | average map value = 0.004368, steps = 48 |
| 30720 | | shifted from previous position = 0.00627 |
| 30721 | | rotated from previous position = 0.0148 degrees |
| 30722 | | atoms outside contour = 977, contour level = 0.0030713 |
| 30723 | | |
| 30724 | | Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to |
| 30725 | | postprocess_20231221.mrc (#1) coordinates: |
| 30726 | | Matrix rotation and translation |
| 30727 | | -0.47538762 0.87643915 -0.07655734 158.50235918 |
| 30728 | | -0.87861097 -0.47743459 -0.00994791 369.90367199 |
| 30729 | | -0.04526986 0.06253500 0.99701555 112.99656841 |
| 30730 | | Axis 0.04125790 -0.01780910 -0.99898980 |
| 30731 | | Axis point 191.02610562 135.40690521 0.00000000 |
| 30732 | | Rotation angle (degrees) 118.54855456 |
| 30733 | | Shift along axis -112.93059754 |
| 30734 | | |
| 30735 | | |
| 30736 | | > fitmap #7 inMap #1 |
| 30737 | | |
| 30738 | | Fit molecule CopBprime_O55029.pdb (#7) to map postprocess_20231221.mrc (#1) |
| 30739 | | using 7214 atoms |
| 30740 | | average map value = 0.00312, steps = 96 |
| 30741 | | shifted from previous position = 3.54 |
| 30742 | | rotated from previous position = 19.3 degrees |
| 30743 | | atoms outside contour = 3686, contour level = 0.0030713 |
| 30744 | | |
| 30745 | | Position of CopBprime_O55029.pdb (#7) relative to postprocess_20231221.mrc |
| 30746 | | (#1) coordinates: |
| 30747 | | Matrix rotation and translation |
| 30748 | | -0.16312220 -0.17485605 -0.97098739 188.46974228 |
| 30749 | | -0.01374495 -0.98367120 0.17944926 177.44362101 |
| 30750 | | -0.98651012 0.04261833 0.15805523 238.56001859 |
| 30751 | | Axis -0.64559811 0.07323964 0.76015725 |
| 30752 | | Axis point 189.52310479 85.45609714 0.00000000 |
| 30753 | | Rotation angle (degrees) 173.91681678 |
| 30754 | | Shift along axis 72.66332588 |
| 30755 | | |
| 30756 | | |
| 30757 | | > fitmap #7 inMap #1 |
| 30758 | | |
| 30759 | | Fit molecule CopBprime_O55029.pdb (#7) to map postprocess_20231221.mrc (#1) |
| 30760 | | using 7214 atoms |
| 30761 | | average map value = 0.003119, steps = 28 |
| 30762 | | shifted from previous position = 0.059 |
| 30763 | | rotated from previous position = 0.0701 degrees |
| 30764 | | atoms outside contour = 3678, contour level = 0.0030713 |
| 30765 | | |
| 30766 | | Position of CopBprime_O55029.pdb (#7) relative to postprocess_20231221.mrc |
| 30767 | | (#1) coordinates: |
| 30768 | | Matrix rotation and translation |
| 30769 | | -0.16270247 -0.17502716 -0.97102698 188.49518175 |
| 30770 | | -0.01484005 -0.98359506 0.17977910 177.40834426 |
| 30771 | | -0.98656357 0.04366059 0.15743593 238.52181597 |
| 30772 | | Axis -0.64577505 0.07370887 0.75996157 |
| 30773 | | Axis point 189.60735220 85.32080770 0.00000000 |
| 30774 | | Rotation angle (degrees) 173.95027220 |
| 30775 | | Shift along axis 72.61849739 |
| 30776 | | |
| 30777 | | |
| 30778 | | > hide #!1 models |
| 30779 | | |
| 30780 | | > select subtract #25.3 |
| 30781 | | |
| 30782 | | Nothing selected |
| 30783 | | |
| 30784 | | > select add #25.3 |
| 30785 | | |
| 30786 | | 3371 atoms, 3370 bonds, 843 residues, 1 model selected |
| 30787 | | |
| 30788 | | > select subtract #25.3 |
| 30789 | | |
| 30790 | | Nothing selected |
| 30791 | | |
| 30792 | | > hide #25.3 models |
| 30793 | | |
| 30794 | | > hide #7 models |
| 30795 | | |
| 30796 | | > show #8 models |
| 30797 | | |
| 30798 | | > show #!25.4 models |
| 30799 | | |
| 30800 | | > select add #25.4 |
| 30801 | | |
| 30802 | | 706 atoms, 704 bonds, 1 pseudobond, 177 residues, 2 models selected |
| 30803 | | |
| 30804 | | > fitmap #25.4 inMap #1 |
| 30805 | | |
| 30806 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif D (#25.4) to map |
| 30807 | | postprocess_20231221.mrc (#1) using 706 atoms |
| 30808 | | average map value = 0.005751, steps = 84 |
| 30809 | | shifted from previous position = 5.75 |
| 30810 | | rotated from previous position = 7.61 degrees |
| 30811 | | atoms outside contour = 156, contour level = 0.0030713 |
| 30812 | | |
| 30813 | | Position of 5nzr_COPI_coat_leaf_2017.cif D (#25.4) relative to |
| 30814 | | postprocess_20231221.mrc (#1) coordinates: |
| 30815 | | Matrix rotation and translation |
| 30816 | | -0.49064014 0.86626986 -0.09406793 165.85506336 |
| 30817 | | -0.87120858 -0.48971430 0.03428547 365.69516018 |
| 30818 | | -0.01636594 0.09877461 0.99497523 106.56737989 |
| 30819 | | Axis 0.03705399 -0.04464579 -0.99831546 |
| 30820 | | Axis point 190.16165110 130.77700867 0.00000000 |
| 30821 | | Rotation angle (degrees) 119.51751550 |
| 30822 | | Shift along axis -116.56901947 |
| 30823 | | |
| 30824 | | |
| 30825 | | > hide #!25.4 models |
| 30826 | | |
| 30827 | | > select subtract #25.4 |
| 30828 | | |
| 30829 | | Nothing selected |
| 30830 | | |
| 30831 | | > show #25.5 models |
| 30832 | | |
| 30833 | | > hide #8 models |
| 30834 | | |
| 30835 | | > show #6 models |
| 30836 | | |
| 30837 | | > hide #6 models |
| 30838 | | |
| 30839 | | > show #5 models |
| 30840 | | |
| 30841 | | > select add #25.5 |
| 30842 | | |
| 30843 | | 635 atoms, 634 bonds, 159 residues, 1 model selected |
| 30844 | | |
| 30845 | | > view matrix models |
| 30846 | | > #25.5,-0.81618,0.4547,-0.35651,366.16,-0.56125,-0.47727,0.67617,389.42,0.13731,0.75197,0.64474,185.92 |
| 30847 | | |
| 30848 | | > ui mousemode right "translate selected models" |
| 30849 | | |
| 30850 | | > view matrix models |
| 30851 | | > #25.5,-0.81618,0.4547,-0.35651,379.31,-0.56125,-0.47727,0.67617,385.17,0.13731,0.75197,0.64474,180.27 |
| 30852 | | |
| 30853 | | > fitmap #25.5 inMap #1 |
| 30854 | | |
| 30855 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif F (#25.5) to map |
| 30856 | | postprocess_20231221.mrc (#1) using 635 atoms |
| 30857 | | average map value = 0.002979, steps = 308 |
| 30858 | | shifted from previous position = 6.54 |
| 30859 | | rotated from previous position = 59.7 degrees |
| 30860 | | atoms outside contour = 415, contour level = 0.0030713 |
| 30861 | | |
| 30862 | | Position of 5nzr_COPI_coat_leaf_2017.cif F (#25.5) relative to |
| 30863 | | postprocess_20231221.mrc (#1) coordinates: |
| 30864 | | Matrix rotation and translation |
| 30865 | | -0.71654810 0.43382071 0.54622193 191.36896955 |
| 30866 | | -0.32335676 -0.90043574 0.29095682 282.02334066 |
| 30867 | | 0.61806085 0.03186001 0.78548438 23.37614478 |
| 30868 | | Axis -0.32246089 -0.08940766 -0.94235091 |
| 30869 | | Axis point 121.98149155 122.51853562 0.00000000 |
| 30870 | | Rotation angle (degrees) 156.31242445 |
| 30871 | | Shift along axis -108.95258872 |
| 30872 | | |
| 30873 | | |
| 30874 | | > view matrix models |
| 30875 | | > #25.5,-0.7187,0.43216,0.54472,305.35,-0.32546,-0.90136,0.28569,390.65,0.61445,0.028044,0.78845,135.72 |
| 30876 | | |
| 30877 | | > fitmap #25.5 inMap #1 |
| 30878 | | |
| 30879 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif F (#25.5) to map |
| 30880 | | postprocess_20231221.mrc (#1) using 635 atoms |
| 30881 | | average map value = 0.00298, steps = 148 |
| 30882 | | shifted from previous position = 4.55 |
| 30883 | | rotated from previous position = 0.283 degrees |
| 30884 | | atoms outside contour = 416, contour level = 0.0030713 |
| 30885 | | |
| 30886 | | Position of 5nzr_COPI_coat_leaf_2017.cif F (#25.5) relative to |
| 30887 | | postprocess_20231221.mrc (#1) coordinates: |
| 30888 | | Matrix rotation and translation |
| 30889 | | -0.71339898 0.43568499 0.54885379 190.53612584 |
| 30890 | | -0.32599318 -0.89965518 0.29042900 282.46371120 |
| 30891 | | 0.62031471 0.02826916 0.78384342 23.36045444 |
| 30892 | | Axis -0.32417629 -0.08836569 -0.94186052 |
| 30893 | | Axis point 121.83877150 122.72602465 0.00000000 |
| 30894 | | Rotation angle (degrees) 156.14974611 |
| 30895 | | Shift along axis -108.72968597 |
| 30896 | | |
| 30897 | | |
| 30898 | | > fitmap #25.5 inMap #1 |
| 30899 | | |
| 30900 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif F (#25.5) to map |
| 30901 | | postprocess_20231221.mrc (#1) using 635 atoms |
| 30902 | | average map value = 0.002979, steps = 128 |
| 30903 | | shifted from previous position = 0.0438 |
| 30904 | | rotated from previous position = 0.246 degrees |
| 30905 | | atoms outside contour = 417, contour level = 0.0030713 |
| 30906 | | |
| 30907 | | Position of 5nzr_COPI_coat_leaf_2017.cif F (#25.5) relative to |
| 30908 | | postprocess_20231221.mrc (#1) coordinates: |
| 30909 | | Matrix rotation and translation |
| 30910 | | -0.71633393 0.43402068 0.54634397 191.29103107 |
| 30911 | | -0.32422244 -0.90037898 0.29016804 282.24449040 |
| 30912 | | 0.61785556 0.03072023 0.78569126 23.47204407 |
| 30913 | | Axis -0.32246098 -0.08887991 -0.94240081 |
| 30914 | | Axis point 122.00120769 122.61282859 0.00000000 |
| 30915 | | Rotation angle (degrees) 156.27837564 |
| 30916 | | Shift along axis -108.88983065 |
| 30917 | | |
| 30918 | | |
| 30919 | | > view matrix models |
| 30920 | | > #25.5,-0.71848,0.43236,0.54484,303.98,-0.32632,-0.9013,0.2849,391.85,0.61424,0.026905,0.78866,136.39 |
| 30921 | | |
| 30922 | | > fitmap #25.5 inMap #1 |
| 30923 | | |
| 30924 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif F (#25.5) to map |
| 30925 | | postprocess_20231221.mrc (#1) using 635 atoms |
| 30926 | | average map value = 0.002979, steps = 136 |
| 30927 | | shifted from previous position = 3.4 |
| 30928 | | rotated from previous position = 0.196 degrees |
| 30929 | | atoms outside contour = 416, contour level = 0.0030713 |
| 30930 | | |
| 30931 | | Position of 5nzr_COPI_coat_leaf_2017.cif F (#25.5) relative to |
| 30932 | | postprocess_20231221.mrc (#1) coordinates: |
| 30933 | | Matrix rotation and translation |
| 30934 | | -0.71397866 0.43506650 0.54859057 190.69622708 |
| 30935 | | -0.32491193 -0.89991822 0.29082543 282.26969342 |
| 30936 | | 0.62021505 0.02939952 0.78388070 23.29855258 |
| 30937 | | Axis -0.32399963 -0.08876820 -0.94188346 |
| 30938 | | Axis point 121.82842948 122.65232790 0.00000000 |
| 30939 | | Rotation angle (degrees) 156.20687582 |
| 30940 | | Shift along axis -108.78660015 |
| 30941 | | |
| 30942 | | |
| 30943 | | > fitmap #5 inMap #1 |
| 30944 | | |
| 30945 | | Fit molecule hArf1_P84078 (#5) to map postprocess_20231221.mrc (#1) using 1457 |
| 30946 | | atoms |
| 30947 | | average map value = 0.002587, steps = 48 |
| 30948 | | shifted from previous position = 0.0368 |
| 30949 | | rotated from previous position = 0.0255 degrees |
| 30950 | | atoms outside contour = 1149, contour level = 0.0030713 |
| 30951 | | |
| 30952 | | Position of hArf1_P84078 (#5) relative to postprocess_20231221.mrc (#1) |
| 30953 | | coordinates: |
| 30954 | | Matrix rotation and translation |
| 30955 | | 0.15764381 0.02404457 0.98720326 126.73261994 |
| 30956 | | -0.68671661 -0.71572886 0.12709238 200.57813479 |
| 30957 | | 0.70962575 -0.69796421 -0.09631842 178.39050082 |
| 30958 | | Axis -0.73416016 0.24699681 -0.63245666 |
| 30959 | | Axis point 0.00000000 138.26266793 -15.48832808 |
| 30960 | | Rotation angle (degrees) 145.81235297 |
| 30961 | | Shift along axis -156.32414243 |
| 30962 | | |
| 30963 | | |
| 30964 | | > fitmap #5 inMap #1 |
| 30965 | | |
| 30966 | | Fit molecule hArf1_P84078 (#5) to map postprocess_20231221.mrc (#1) using 1457 |
| 30967 | | atoms |
| 30968 | | average map value = 0.002587, steps = 44 |
| 30969 | | shifted from previous position = 0.00981 |
| 30970 | | rotated from previous position = 0.0462 degrees |
| 30971 | | atoms outside contour = 1150, contour level = 0.0030713 |
| 30972 | | |
| 30973 | | Position of hArf1_P84078 (#5) relative to postprocess_20231221.mrc (#1) |
| 30974 | | coordinates: |
| 30975 | | Matrix rotation and translation |
| 30976 | | 0.15689280 0.02422660 0.98731844 126.72229531 |
| 30977 | | -0.68692000 -0.71560036 0.12671632 200.57644266 |
| 30978 | | 0.70959535 -0.69808966 -0.09563081 178.39181938 |
| 30979 | | Axis -0.73387458 0.24710529 -0.63274566 |
| 30980 | | Axis point 0.00000000 138.27844137 -15.55661388 |
| 30981 | | Rotation angle (degrees) 145.80903401 |
| 30982 | | Shift along axis -156.31142131 |
| 30983 | | |
| 30984 | | |
| 30985 | | > fitmap #25.5 inMap #1 |
| 30986 | | |
| 30987 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif F (#25.5) to map |
| 30988 | | postprocess_20231221.mrc (#1) using 635 atoms |
| 30989 | | average map value = 0.002979, steps = 248 |
| 30990 | | shifted from previous position = 0.0207 |
| 30991 | | rotated from previous position = 0.177 degrees |
| 30992 | | atoms outside contour = 418, contour level = 0.0030713 |
| 30993 | | |
| 30994 | | Position of 5nzr_COPI_coat_leaf_2017.cif F (#25.5) relative to |
| 30995 | | postprocess_20231221.mrc (#1) coordinates: |
| 30996 | | Matrix rotation and translation |
| 30997 | | -0.71390883 0.43627272 0.54772281 190.65990615 |
| 30998 | | -0.32756532 -0.89940270 0.28944038 282.77508578 |
| 30999 | | 0.61889832 0.02721904 0.78499935 23.55080874 |
| 31000 | | Axis -0.32344066 -0.08779246 -0.94216698 |
| 31001 | | Axis point 121.99487683 122.81354587 0.00000000 |
| 31002 | | Rotation angle (degrees) 156.08616419 |
| 31003 | | Shift along axis -108.68147988 |
| 31004 | | |
| 31005 | | |
| 31006 | | > fitmap #25.5 inMap #1 |
| 31007 | | |
| 31008 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif F (#25.5) to map |
| 31009 | | postprocess_20231221.mrc (#1) using 635 atoms |
| 31010 | | average map value = 0.002979, steps = 100 |
| 31011 | | shifted from previous position = 0.026 |
| 31012 | | rotated from previous position = 0.173 degrees |
| 31013 | | atoms outside contour = 417, contour level = 0.0030713 |
| 31014 | | |
| 31015 | | Position of 5nzr_COPI_coat_leaf_2017.cif F (#25.5) relative to |
| 31016 | | postprocess_20231221.mrc (#1) coordinates: |
| 31017 | | Matrix rotation and translation |
| 31018 | | -0.71499486 0.43483737 0.54744753 190.94416222 |
| 31019 | | -0.32495537 -0.90001607 0.29047386 282.30441960 |
| 31020 | | 0.61902047 0.02979130 0.78480961 23.38220887 |
| 31021 | | Axis -0.32324665 -0.08875052 -0.94214380 |
| 31022 | | Axis point 121.92660031 122.64481230 0.00000000 |
| 31023 | | Rotation angle (degrees) 156.22002669 |
| 31024 | | Shift along axis -108.80612902 |
| 31025 | | |
| 31026 | | |
| 31027 | | > fitmap #25.5 inMap #1 |
| 31028 | | |
| 31029 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif F (#25.5) to map |
| 31030 | | postprocess_20231221.mrc (#1) using 635 atoms |
| 31031 | | average map value = 0.002979, steps = 296 |
| 31032 | | shifted from previous position = 0.019 |
| 31033 | | rotated from previous position = 0.062 degrees |
| 31034 | | atoms outside contour = 417, contour level = 0.0030713 |
| 31035 | | |
| 31036 | | Position of 5nzr_COPI_coat_leaf_2017.cif F (#25.5) relative to |
| 31037 | | postprocess_20231221.mrc (#1) coordinates: |
| 31038 | | Matrix rotation and translation |
| 31039 | | -0.71427567 0.43543346 0.54791236 190.76898317 |
| 31040 | | -0.32523139 -0.89973120 0.29104691 282.28959226 |
| 31041 | | 0.61970541 0.02968943 0.78427274 23.32706989 |
| 31042 | | Axis -0.32365836 -0.08890667 -0.94198772 |
| 31043 | | Axis point 121.88785716 122.63494813 0.00000000 |
| 31044 | | Rotation angle (degrees) 156.18685604 |
| 31045 | | Shift along axis -108.81521620 |
| 31046 | | |
| 31047 | | |
| 31048 | | > show #!1 models |
| 31049 | | |
| 31050 | | > hide #5 models |
| 31051 | | |
| 31052 | | > select subtract #25.5 |
| 31053 | | |
| 31054 | | Nothing selected |
| 31055 | | |
| 31056 | | > hide #25.5 models |
| 31057 | | |
| 31058 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 31059 | | > dataset/Chimera sessions/20240212_leaf_fitting_v5.cxs" |
| 31060 | | |
| 31061 | | > show #25.5 models |
| 31062 | | |
| 31063 | | > hide #25.5 models |
| 31064 | | |
| 31065 | | > select add #25.5 |
| 31066 | | |
| 31067 | | 635 atoms, 634 bonds, 159 residues, 1 model selected |
| 31068 | | |
| 31069 | | > select subtract #25.5 |
| 31070 | | |
| 31071 | | Nothing selected |
| 31072 | | |
| 31073 | | > select add #25.5 |
| 31074 | | |
| 31075 | | 635 atoms, 634 bonds, 159 residues, 1 model selected |
| 31076 | | |
| 31077 | | > select subtract #25.5 |
| 31078 | | |
| 31079 | | Nothing selected |
| 31080 | | |
| 31081 | | > show #25.5 models |
| 31082 | | |
| 31083 | | > show #6 models |
| 31084 | | |
| 31085 | | > hide #6 models |
| 31086 | | |
| 31087 | | > show #5 models |
| 31088 | | |
| 31089 | | > hide #5 models |
| 31090 | | |
| 31091 | | > show #5 models |
| 31092 | | |
| 31093 | | > hide #5 models |
| 31094 | | |
| 31095 | | > show #5 models |
| 31096 | | |
| 31097 | | > hide #5 models |
| 31098 | | |
| 31099 | | > show #6 models |
| 31100 | | |
| 31101 | | > hide #6 models |
| 31102 | | |
| 31103 | | > show #5 models |
| 31104 | | |
| 31105 | | > hide #5 models |
| 31106 | | |
| 31107 | | > show #5 models |
| 31108 | | |
| 31109 | | > hide #5 models |
| 31110 | | |
| 31111 | | > hide #25.5 models |
| 31112 | | |
| 31113 | | > hide #!1 models |
| 31114 | | |
| 31115 | | > show #!1 models |
| 31116 | | |
| 31117 | | > show #5 models |
| 31118 | | |
| 31119 | | > hide #5 models |
| 31120 | | |
| 31121 | | > show #6 models |
| 31122 | | |
| 31123 | | > hide #6 models |
| 31124 | | |
| 31125 | | > show #6 models |
| 31126 | | |
| 31127 | | > hide #6 models |
| 31128 | | |
| 31129 | | > show #6 models |
| 31130 | | |
| 31131 | | > show #5 models |
| 31132 | | |
| 31133 | | > hide #5 models |
| 31134 | | |
| 31135 | | > hide #6 models |
| 31136 | | |
| 31137 | | > show #6 models |
| 31138 | | |
| 31139 | | > show #5 models |
| 31140 | | |
| 31141 | | > hide #6 models |
| 31142 | | |
| 31143 | | > hide #5 models |
| 31144 | | |
| 31145 | | > show #6 models |
| 31146 | | |
| 31147 | | > show #5 models |
| 31148 | | |
| 31149 | | > hide #5 models |
| 31150 | | |
| 31151 | | > hide #6 models |
| 31152 | | |
| 31153 | | > show #4 models |
| 31154 | | |
| 31155 | | > volume #1 level 0.003994 |
| 31156 | | |
| 31157 | | > volume #1 level 0.00261 |
| 31158 | | |
| 31159 | | > select add #4 |
| 31160 | | |
| 31161 | | 7501 atoms, 7619 bonds, 953 residues, 1 model selected |
| 31162 | | |
| 31163 | | > ui mousemode right "rotate selected models" |
| 31164 | | |
| 31165 | | > view matrix models |
| 31166 | | > #4,-0.05188,-0.63754,0.76867,284,-0.29607,0.74492,0.59786,318.34,-0.95376,-0.19656,-0.2274,349.89 |
| 31167 | | |
| 31168 | | > fitmap #4 inMap #1 |
| 31169 | | |
| 31170 | | Fit molecule CopB_Q9JIF7.pdb (#4) to map postprocess_20231221.mrc (#1) using |
| 31171 | | 7501 atoms |
| 31172 | | average map value = 0.002923, steps = 168 |
| 31173 | | shifted from previous position = 1.37 |
| 31174 | | rotated from previous position = 17.4 degrees |
| 31175 | | atoms outside contour = 4241, contour level = 0.0026099 |
| 31176 | | |
| 31177 | | Position of CopB_Q9JIF7.pdb (#4) relative to postprocess_20231221.mrc (#1) |
| 31178 | | coordinates: |
| 31179 | | Matrix rotation and translation |
| 31180 | | -0.04176347 -0.73290883 0.67904378 172.38294327 |
| 31181 | | -0.03836890 0.68031190 0.73191772 204.58729961 |
| 31182 | | -0.99839052 0.00451326 -0.05653309 236.22237826 |
| 31183 | | Axis -0.37191513 0.85765654 0.35511180 |
| 31184 | | Axis point 209.24883276 0.00000000 -39.77291852 |
| 31185 | | Rotation angle (degrees) 102.06330668 |
| 31186 | | Shift along axis 195.23916518 |
| 31187 | | |
| 31188 | | |
| 31189 | | > fitmap #4 inMap #1 |
| 31190 | | |
| 31191 | | Fit molecule CopB_Q9JIF7.pdb (#4) to map postprocess_20231221.mrc (#1) using |
| 31192 | | 7501 atoms |
| 31193 | | average map value = 0.002923, steps = 84 |
| 31194 | | shifted from previous position = 0.0295 |
| 31195 | | rotated from previous position = 0.0281 degrees |
| 31196 | | atoms outside contour = 4239, contour level = 0.0026099 |
| 31197 | | |
| 31198 | | Position of CopB_Q9JIF7.pdb (#4) relative to postprocess_20231221.mrc (#1) |
| 31199 | | coordinates: |
| 31200 | | Matrix rotation and translation |
| 31201 | | -0.04186364 -0.73313873 0.67878939 172.36289881 |
| 31202 | | -0.03871970 0.68006509 0.73212858 204.56813767 |
| 31203 | | -0.99837279 0.00436704 -0.05685691 236.22572632 |
| 31204 | | Axis -0.37212500 0.85758032 0.35507603 |
| 31205 | | Axis point 209.25927852 0.00000000 -39.73446400 |
| 31206 | | Rotation angle (degrees) 102.08295835 |
| 31207 | | Shift along axis 195.17115835 |
| 31208 | | |
| 31209 | | |
| 31210 | | > fitmap #4 inMap #1 |
| 31211 | | |
| 31212 | | Fit molecule CopB_Q9JIF7.pdb (#4) to map postprocess_20231221.mrc (#1) using |
| 31213 | | 7501 atoms |
| 31214 | | average map value = 0.002923, steps = 64 |
| 31215 | | shifted from previous position = 0.0254 |
| 31216 | | rotated from previous position = 0.0438 degrees |
| 31217 | | atoms outside contour = 4237, contour level = 0.0026099 |
| 31218 | | |
| 31219 | | Position of CopB_Q9JIF7.pdb (#4) relative to postprocess_20231221.mrc (#1) |
| 31220 | | coordinates: |
| 31221 | | Matrix rotation and translation |
| 31222 | | -0.04160064 -0.73285881 0.67910776 172.35253082 |
| 31223 | | -0.03812474 0.68036549 0.73188066 204.56244996 |
| 31224 | | -0.99840668 0.00455589 -0.05624369 236.24744801 |
| 31225 | | Axis -0.37185384 0.85765014 0.35519144 |
| 31226 | | Axis point 209.24263523 0.00000000 -39.78121436 |
| 31227 | | Rotation angle (degrees) 102.04848903 |
| 31228 | | Shift along axis 195.26613509 |
| 31229 | | |
| 31230 | | |
| 31231 | | > fitmap #4 inMap #1 |
| 31232 | | |
| 31233 | | Fit molecule CopB_Q9JIF7.pdb (#4) to map postprocess_20231221.mrc (#1) using |
| 31234 | | 7501 atoms |
| 31235 | | average map value = 0.002923, steps = 88 |
| 31236 | | shifted from previous position = 0.0061 |
| 31237 | | rotated from previous position = 0.0174 degrees |
| 31238 | | atoms outside contour = 4239, contour level = 0.0026099 |
| 31239 | | |
| 31240 | | Position of CopB_Q9JIF7.pdb (#4) relative to postprocess_20231221.mrc (#1) |
| 31241 | | coordinates: |
| 31242 | | Matrix rotation and translation |
| 31243 | | -0.04184488 -0.73286543 0.67908561 172.35866702 |
| 31244 | | -0.03830325 0.68035797 0.73187833 204.56322632 |
| 31245 | | -0.99838964 0.00461417 -0.05654063 236.24556931 |
| 31246 | | Axis -0.37184514 0.85768149 0.35512484 |
| 31247 | | Axis point 209.22469544 0.00000000 -39.73577931 |
| 31248 | | Rotation angle (degrees) 102.06456279 |
| 31249 | | Shift along axis 195.25603077 |
| 31250 | | |
| 31251 | | |
| 31252 | | > select subtract #4 |
| 31253 | | |
| 31254 | | Nothing selected |
| 31255 | | |
| 31256 | | > show #!25.2 models |
| 31257 | | |
| 31258 | | > hide #4 models |
| 31259 | | |
| 31260 | | > fitmap #25.2 inMap #1 |
| 31261 | | |
| 31262 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map |
| 31263 | | postprocess_20231221.mrc (#1) using 3198 atoms |
| 31264 | | average map value = 0.004719, steps = 2000 |
| 31265 | | shifted from previous position = 0.362 |
| 31266 | | rotated from previous position = 0.363 degrees |
| 31267 | | atoms outside contour = 834, contour level = 0.0026099 |
| 31268 | | |
| 31269 | | Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to |
| 31270 | | postprocess_20231221.mrc (#1) coordinates: |
| 31271 | | Matrix rotation and translation |
| 31272 | | -0.50636564 0.85675765 -0.09777602 169.57780713 |
| 31273 | | -0.86012716 -0.50990038 -0.01352292 371.25526671 |
| 31274 | | -0.06144189 0.07725227 0.99511656 115.74602408 |
| 31275 | | Axis 0.05278650 -0.02112859 -0.99838228 |
| 31276 | | Axis point 192.99162836 134.33980830 0.00000000 |
| 31277 | | Rotation angle (degrees) 120.70211983 |
| 31278 | | Shift along axis -114.45145959 |
| 31279 | | |
| 31280 | | |
| 31281 | | > fitmap #25.2 inMap #1 |
| 31282 | | |
| 31283 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map |
| 31284 | | postprocess_20231221.mrc (#1) using 3198 atoms |
| 31285 | | average map value = 0.00482, steps = 536 |
| 31286 | | shifted from previous position = 1.23 |
| 31287 | | rotated from previous position = 1.72 degrees |
| 31288 | | atoms outside contour = 799, contour level = 0.0026099 |
| 31289 | | |
| 31290 | | Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to |
| 31291 | | postprocess_20231221.mrc (#1) coordinates: |
| 31292 | | Matrix rotation and translation |
| 31293 | | -0.49464042 0.86526798 -0.08149953 165.39425343 |
| 31294 | | -0.86837674 -0.49587111 0.00580183 369.24428351 |
| 31295 | | -0.03539312 0.07364212 0.99665649 111.40460245 |
| 31296 | | Axis 0.03908787 -0.02656536 -0.99888259 |
| 31297 | | Axis point 191.14127299 133.84616419 0.00000000 |
| 31298 | | Rotation angle (degrees) 119.79693397 |
| 31299 | | Shift along axis -114.62431386 |
| 31300 | | |
| 31301 | | |
| 31302 | | > fitmap #25.2 inMap #1 |
| 31303 | | |
| 31304 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map |
| 31305 | | postprocess_20231221.mrc (#1) using 3198 atoms |
| 31306 | | average map value = 0.004821, steps = 980 |
| 31307 | | shifted from previous position = 0.0229 |
| 31308 | | rotated from previous position = 0.0197 degrees |
| 31309 | | atoms outside contour = 800, contour level = 0.0026099 |
| 31310 | | |
| 31311 | | Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to |
| 31312 | | postprocess_20231221.mrc (#1) coordinates: |
| 31313 | | Matrix rotation and translation |
| 31314 | | -0.49468130 0.86527653 -0.08115991 165.37085423 |
| 31315 | | -0.86836176 -0.49589685 0.00584550 369.25692230 |
| 31316 | | -0.03518897 0.07336782 0.99668395 111.40497384 |
| 31317 | | Axis 0.03890517 -0.02648764 -0.99889178 |
| 31318 | | Axis point 191.12185163 133.87138068 0.00000000 |
| 31319 | | Rotation angle (degrees) 119.79822657 |
| 31320 | | Shift along axis -114.62847805 |
| 31321 | | |
| 31322 | | |
| 31323 | | > fitmap #25.2 inMap #1 |
| 31324 | | |
| 31325 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map |
| 31326 | | postprocess_20231221.mrc (#1) using 3198 atoms |
| 31327 | | average map value = 0.004749, steps = 2000 |
| 31328 | | shifted from previous position = 0.642 |
| 31329 | | rotated from previous position = 0.636 degrees |
| 31330 | | atoms outside contour = 800, contour level = 0.0026099 |
| 31331 | | |
| 31332 | | Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to |
| 31333 | | postprocess_20231221.mrc (#1) coordinates: |
| 31334 | | Matrix rotation and translation |
| 31335 | | -0.49149695 0.86624681 -0.08970622 165.57569659 |
| 31336 | | -0.87021696 -0.49252729 0.01180287 368.01917561 |
| 31337 | | -0.03395856 0.08386495 0.99589833 110.70394502 |
| 31338 | | Axis 0.04144232 -0.03206003 -0.99862640 |
| 31339 | | Axis point 191.23240381 132.59584765 0.00000000 |
| 31340 | | Rotation angle (degrees) 119.60797979 |
| 31341 | | Shift along axis -115.48874741 |
| 31342 | | |
| 31343 | | |
| 31344 | | > fitmap #25.2 inMap #1 |
| 31345 | | |
| 31346 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map |
| 31347 | | postprocess_20231221.mrc (#1) using 3198 atoms |
| 31348 | | average map value = 0.004719, steps = 2000 |
| 31349 | | shifted from previous position = 0.813 |
| 31350 | | rotated from previous position = 1.91 degrees |
| 31351 | | atoms outside contour = 835, contour level = 0.0026099 |
| 31352 | | |
| 31353 | | Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to |
| 31354 | | postprocess_20231221.mrc (#1) coordinates: |
| 31355 | | Matrix rotation and translation |
| 31356 | | -0.50634022 0.85677189 -0.09778293 169.57700834 |
| 31357 | | -0.86013886 -0.50987927 -0.01357418 371.26630152 |
| 31358 | | -0.06148747 0.07723375 0.99511518 115.75480340 |
| 31359 | | Axis 0.05280471 -0.02110577 -0.99838179 |
| 31360 | | Axis point 192.99968517 134.34467403 0.00000000 |
| 31361 | | Rotation angle (degrees) 120.70061558 |
| 31362 | | Shift along axis -114.44888593 |
| 31363 | | |
| 31364 | | |
| 31365 | | > fitmap #25.2 inMap #1 |
| 31366 | | |
| 31367 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map |
| 31368 | | postprocess_20231221.mrc (#1) using 3198 atoms |
| 31369 | | average map value = 0.004725, steps = 2000 |
| 31370 | | shifted from previous position = 0.191 |
| 31371 | | rotated from previous position = 0.172 degrees |
| 31372 | | atoms outside contour = 847, contour level = 0.0026099 |
| 31373 | | |
| 31374 | | Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to |
| 31375 | | postprocess_20231221.mrc (#1) coordinates: |
| 31376 | | Matrix rotation and translation |
| 31377 | | -0.50743553 0.85643414 -0.09502485 169.28322407 |
| 31378 | | -0.85961565 -0.51077340 -0.01309400 371.31505890 |
| 31379 | | -0.05975031 0.07504049 0.99538877 115.80005830 |
| 31380 | | Axis 0.05128053 -0.02052428 -0.99847337 |
| 31381 | | Axis point 192.66583518 134.59673048 0.00000000 |
| 31382 | | Rotation angle (degrees) 120.75780048 |
| 31383 | | Shift along axis -114.56331573 |
| 31384 | | |
| 31385 | | |
| 31386 | | > fitmap #25.2 inMap #1 |
| 31387 | | |
| 31388 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map |
| 31389 | | postprocess_20231221.mrc (#1) using 3198 atoms |
| 31390 | | average map value = 0.004741, steps = 2000 |
| 31391 | | shifted from previous position = 1.14 |
| 31392 | | rotated from previous position = 0.899 degrees |
| 31393 | | atoms outside contour = 953, contour level = 0.0026099 |
| 31394 | | |
| 31395 | | Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to |
| 31396 | | postprocess_20231221.mrc (#1) coordinates: |
| 31397 | | Matrix rotation and translation |
| 31398 | | -0.50305498 0.85978935 -0.08773792 167.88037321 |
| 31399 | | -0.86307723 -0.50507115 -0.00090608 370.78933379 |
| 31400 | | -0.04509293 0.07526879 0.99614317 113.45485580 |
| 31401 | | Axis 0.04415738 -0.02472063 -0.99871869 |
| 31402 | | Axis point 191.95152599 134.39625416 0.00000000 |
| 31403 | | Rotation angle (degrees) 120.39719134 |
| 31404 | | Shift along axis -115.06247320 |
| 31405 | | |
| 31406 | | |
| 31407 | | > fitmap #25.2 inMap #1 |
| 31408 | | |
| 31409 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map |
| 31410 | | postprocess_20231221.mrc (#1) using 3198 atoms |
| 31411 | | average map value = 0.004765, steps = 2000 |
| 31412 | | shifted from previous position = 1.01 |
| 31413 | | rotated from previous position = 0.423 degrees |
| 31414 | | atoms outside contour = 866, contour level = 0.0026099 |
| 31415 | | |
| 31416 | | Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to |
| 31417 | | postprocess_20231221.mrc (#1) coordinates: |
| 31418 | | Matrix rotation and translation |
| 31419 | | -0.50359516 0.86000616 -0.08234871 167.51856402 |
| 31420 | | -0.86267696 -0.50572126 -0.00587080 370.87795232 |
| 31421 | | -0.04669441 0.06808383 0.99658628 113.43225743 |
| 31422 | | Axis 0.04288124 -0.02067349 -0.99886626 |
| 31423 | | Axis point 191.79511786 134.86449404 0.00000000 |
| 31424 | | Rotation angle (degrees) 120.42201089 |
| 31425 | | Shift along axis -113.78759381 |
| 31426 | | |
| 31427 | | |
| 31428 | | > fitmap #25.2 inMap #1 |
| 31429 | | |
| 31430 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map |
| 31431 | | postprocess_20231221.mrc (#1) using 3198 atoms |
| 31432 | | average map value = 0.004745, steps = 2000 |
| 31433 | | shifted from previous position = 0.934 |
| 31434 | | rotated from previous position = 1.35 degrees |
| 31435 | | atoms outside contour = 798, contour level = 0.0026099 |
| 31436 | | |
| 31437 | | Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to |
| 31438 | | postprocess_20231221.mrc (#1) coordinates: |
| 31439 | | Matrix rotation and translation |
| 31440 | | -0.49260004 0.86554228 -0.09045301 165.87029937 |
| 31441 | | -0.86955802 -0.49370059 0.01133828 368.05758140 |
| 31442 | | -0.03484294 0.08423937 0.99583617 110.84105115 |
| 31443 | | Axis 0.04195695 -0.03200540 -0.99860666 |
| 31444 | | Axis point 191.26189535 132.58842921 0.00000000 |
| 31445 | | Rotation angle (degrees) 119.68506517 |
| 31446 | | Shift along axis -115.50703149 |
| 31447 | | |
| 31448 | | |
| 31449 | | > fitmap #25.2 inMap #1 |
| 31450 | | |
| 31451 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map |
| 31452 | | postprocess_20231221.mrc (#1) using 3198 atoms |
| 31453 | | average map value = 0.004715, steps = 2000 |
| 31454 | | shifted from previous position = 0.551 |
| 31455 | | rotated from previous position = 1.08 degrees |
| 31456 | | atoms outside contour = 806, contour level = 0.0026099 |
| 31457 | | |
| 31458 | | Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to |
| 31459 | | postprocess_20231221.mrc (#1) coordinates: |
| 31460 | | Matrix rotation and translation |
| 31461 | | -0.49691031 0.86175197 -0.10229205 168.08104532 |
| 31462 | | -0.86621925 -0.49966190 -0.00147959 369.47644931 |
| 31463 | | -0.05238647 0.08787212 0.99475330 113.38812739 |
| 31464 | | Axis 0.05161856 -0.02883050 -0.99825063 |
| 31465 | | Axis point 192.72913075 132.83692567 0.00000000 |
| 31466 | | Rotation angle (degrees) 120.06018753 |
| 31467 | | Shift along axis -115.16585742 |
| 31468 | | |
| 31469 | | |
| 31470 | | > fitmap #25.2 inMap #1 |
| 31471 | | |
| 31472 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map |
| 31473 | | postprocess_20231221.mrc (#1) using 3198 atoms |
| 31474 | | average map value = 0.004723, steps = 2000 |
| 31475 | | shifted from previous position = 1.52 |
| 31476 | | rotated from previous position = 0.873 degrees |
| 31477 | | atoms outside contour = 968, contour level = 0.0026099 |
| 31478 | | |
| 31479 | | Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to |
| 31480 | | postprocess_20231221.mrc (#1) coordinates: |
| 31481 | | Matrix rotation and translation |
| 31482 | | -0.50092577 0.86104342 -0.08762183 167.41226756 |
| 31483 | | -0.86432877 -0.50292643 -0.00087810 370.87113815 |
| 31484 | | -0.04482342 0.07529420 0.99615342 113.44095535 |
| 31485 | | Axis 0.04409183 -0.02477358 -0.99872027 |
| 31486 | | Axis point 192.03852716 134.42788571 0.00000000 |
| 31487 | | Rotation angle (degrees) 120.25500255 |
| 31488 | | Shift along axis -115.10207321 |
| 31489 | | |
| 31490 | | |
| 31491 | | > hide #!25.2 models |
| 31492 | | |
| 31493 | | > show #25.3 models |
| 31494 | | |
| 31495 | | > fitmap #25.3 inMap #1 |
| 31496 | | |
| 31497 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map |
| 31498 | | postprocess_20231221.mrc (#1) using 3371 atoms |
| 31499 | | average map value = 0.004368, steps = 44 |
| 31500 | | shifted from previous position = 0.054 |
| 31501 | | rotated from previous position = 0.0481 degrees |
| 31502 | | atoms outside contour = 737, contour level = 0.0026099 |
| 31503 | | |
| 31504 | | Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to |
| 31505 | | postprocess_20231221.mrc (#1) coordinates: |
| 31506 | | Matrix rotation and translation |
| 31507 | | -0.47518849 0.87648454 -0.07727061 158.58564377 |
| 31508 | | -0.87871888 -0.47724366 -0.00957144 369.81381560 |
| 31509 | | -0.04526613 0.06335090 0.99696421 112.93537532 |
| 31510 | | Axis 0.04150368 -0.01821532 -0.99897230 |
| 31511 | | Axis point 191.06573654 135.29446658 0.00000000 |
| 31512 | | Rotation angle (degrees) 118.53750854 |
| 31513 | | Shift along axis -112.97369921 |
| 31514 | | |
| 31515 | | |
| 31516 | | > fitmap #25.3 inMap #1 |
| 31517 | | |
| 31518 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map |
| 31519 | | postprocess_20231221.mrc (#1) using 3371 atoms |
| 31520 | | average map value = 0.004368, steps = 64 |
| 31521 | | shifted from previous position = 0.0507 |
| 31522 | | rotated from previous position = 0.0272 degrees |
| 31523 | | atoms outside contour = 732, contour level = 0.0026099 |
| 31524 | | |
| 31525 | | Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to |
| 31526 | | postprocess_20231221.mrc (#1) coordinates: |
| 31527 | | Matrix rotation and translation |
| 31528 | | -0.47532486 0.87644646 -0.07686258 158.53837832 |
| 31529 | | -0.87864630 -0.47737353 -0.00975648 369.87524863 |
| 31530 | | -0.04524320 0.06289752 0.99699395 112.94969031 |
| 31531 | | Axis 0.04135398 -0.01799746 -0.99898245 |
| 31532 | | Axis point 191.04184026 135.36488118 0.00000000 |
| 31533 | | Rotation angle (degrees) 118.54522094 |
| 31534 | | Shift along axis -112.93537940 |
| 31535 | | |
| 31536 | | |
| 31537 | | > fitmap #25.3 inMap #1 |
| 31538 | | |
| 31539 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map |
| 31540 | | postprocess_20231221.mrc (#1) using 3371 atoms |
| 31541 | | average map value = 0.004368, steps = 48 |
| 31542 | | shifted from previous position = 0.0187 |
| 31543 | | rotated from previous position = 0.014 degrees |
| 31544 | | atoms outside contour = 734, contour level = 0.0026099 |
| 31545 | | |
| 31546 | | Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to |
| 31547 | | postprocess_20231221.mrc (#1) coordinates: |
| 31548 | | Matrix rotation and translation |
| 31549 | | -0.47527994 0.87646538 -0.07692468 158.52367551 |
| 31550 | | -0.87865859 -0.47734607 -0.00999032 369.89893637 |
| 31551 | | -0.04547587 0.06284233 0.99698685 113.00413809 |
| 31552 | | Axis 0.04145483 -0.01790001 -0.99898002 |
| 31553 | | Axis point 191.05652571 135.38051906 0.00000000 |
| 31554 | | Rotation angle (degrees) 118.54309199 |
| 31555 | | Shift along axis -112.93849955 |
| 31556 | | |
| 31557 | | |
| 31558 | | > fitmap #25.3 inMap #1 |
| 31559 | | |
| 31560 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map |
| 31561 | | postprocess_20231221.mrc (#1) using 3371 atoms |
| 31562 | | average map value = 0.004368, steps = 44 |
| 31563 | | shifted from previous position = 0.0384 |
| 31564 | | rotated from previous position = 0.0184 degrees |
| 31565 | | atoms outside contour = 734, contour level = 0.0026099 |
| 31566 | | |
| 31567 | | Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to |
| 31568 | | postprocess_20231221.mrc (#1) coordinates: |
| 31569 | | Matrix rotation and translation |
| 31570 | | -0.47533018 0.87642335 -0.07709296 158.58640517 |
| 31571 | | -0.87863936 -0.47738704 -0.00972003 369.84429471 |
| 31572 | | -0.04532204 0.06311669 0.99697652 112.96267918 |
| 31573 | | Axis 0.04145844 -0.01808392 -0.99897656 |
| 31574 | | Axis point 191.05786763 135.32713922 0.00000000 |
| 31575 | | Rotation angle (degrees) 118.54640344 |
| 31576 | | Shift along axis -112.96055642 |
| 31577 | | |
| 31578 | | |
| 31579 | | > fitmap #25.3 inMap #1 |
| 31580 | | |
| 31581 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map |
| 31582 | | postprocess_20231221.mrc (#1) using 3371 atoms |
| 31583 | | average map value = 0.004368, steps = 64 |
| 31584 | | shifted from previous position = 0.0441 |
| 31585 | | rotated from previous position = 0.0294 degrees |
| 31586 | | atoms outside contour = 730, contour level = 0.0026099 |
| 31587 | | |
| 31588 | | Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to |
| 31589 | | postprocess_20231221.mrc (#1) coordinates: |
| 31590 | | Matrix rotation and translation |
| 31591 | | -0.47515651 0.87654065 -0.07682952 158.48449319 |
| 31592 | | -0.87872211 -0.47722632 -0.01012294 369.92210555 |
| 31593 | | -0.04553824 0.06270182 0.99699285 113.05181481 |
| 31594 | | Axis 0.04144714 -0.01780898 -0.99898197 |
| 31595 | | Axis point 191.06480286 135.40078755 0.00000000 |
| 31596 | | Rotation angle (degrees) 118.53496621 |
| 31597 | | Shift along axis -112.95592957 |
| 31598 | | |
| 31599 | | |
| 31600 | | > fitmap #25.3 inMap #1 |
| 31601 | | |
| 31602 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map |
| 31603 | | postprocess_20231221.mrc (#1) using 3371 atoms |
| 31604 | | average map value = 0.004368, steps = 40 |
| 31605 | | shifted from previous position = 0.0416 |
| 31606 | | rotated from previous position = 0.0456 degrees |
| 31607 | | atoms outside contour = 732, contour level = 0.0026099 |
| 31608 | | |
| 31609 | | Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to |
| 31610 | | postprocess_20231221.mrc (#1) coordinates: |
| 31611 | | Matrix rotation and translation |
| 31612 | | -0.47560906 0.87630331 -0.07673663 158.57882732 |
| 31613 | | -0.87850696 -0.47763542 -0.00948209 369.84754069 |
| 31614 | | -0.04496132 0.06290389 0.99700630 112.89946853 |
| 31615 | | Axis 0.04120824 -0.01808920 -0.99898682 |
| 31616 | | Axis point 191.00310529 135.35610620 0.00000000 |
| 31617 | | Rotation angle (degrees) 118.56262877 |
| 31618 | | Shift along axis -112.94057261 |
| 31619 | | |
| 31620 | | |
| 31621 | | > fitmap #25.3 inMap #1 |
| 31622 | | |
| 31623 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map |
| 31624 | | postprocess_20231221.mrc (#1) using 3371 atoms |
| 31625 | | average map value = 0.004368, steps = 76 |
| 31626 | | shifted from previous position = 0.0448 |
| 31627 | | rotated from previous position = 0.0311 degrees |
| 31628 | | atoms outside contour = 734, contour level = 0.0026099 |
| 31629 | | |
| 31630 | | Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to |
| 31631 | | postprocess_20231221.mrc (#1) coordinates: |
| 31632 | | Matrix rotation and translation |
| 31633 | | -0.47526730 0.87645852 -0.07708070 158.57002802 |
| 31634 | | -0.87867486 -0.47732212 -0.00969911 369.83916504 |
| 31635 | | -0.04529319 0.06311920 0.99697767 112.96112486 |
| 31636 | | Axis 0.04144632 -0.01809263 -0.99897691 |
| 31637 | | Axis point 191.05622279 135.32528255 0.00000000 |
| 31638 | | Rotation angle (degrees) 118.54219836 |
| 31639 | | Shift along axis -112.96477632 |
| 31640 | | |
| 31641 | | |
| 31642 | | > fitmap #25.3 inMap #1 |
| 31643 | | |
| 31644 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map |
| 31645 | | postprocess_20231221.mrc (#1) using 3371 atoms |
| 31646 | | average map value = 0.004368, steps = 64 |
| 31647 | | shifted from previous position = 0.0132 |
| 31648 | | rotated from previous position = 0.0162 degrees |
| 31649 | | atoms outside contour = 735, contour level = 0.0026099 |
| 31650 | | |
| 31651 | | Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to |
| 31652 | | postprocess_20231221.mrc (#1) coordinates: |
| 31653 | | Matrix rotation and translation |
| 31654 | | -0.47517741 0.87648910 -0.07728691 158.58719798 |
| 31655 | | -0.87872597 -0.47723124 -0.00953915 369.80660124 |
| 31656 | | -0.04524469 0.06338123 0.99696325 112.92983269 |
| 31657 | | Axis 0.04150227 -0.01823667 -0.99897196 |
| 31658 | | Axis point 191.06507637 135.28853304 0.00000000 |
| 31659 | | Rotation angle (degrees) 118.53677364 |
| 31660 | | Shift along axis -112.97604896 |
| 31661 | | |
| 31662 | | |
| 31663 | | > fitmap #25.3 inMap #1 |
| 31664 | | |
| 31665 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map |
| 31666 | | postprocess_20231221.mrc (#1) using 3371 atoms |
| 31667 | | average map value = 0.004368, steps = 48 |
| 31668 | | shifted from previous position = 0.00626 |
| 31669 | | rotated from previous position = 0.0138 degrees |
| 31670 | | atoms outside contour = 734, contour level = 0.0026099 |
| 31671 | | |
| 31672 | | Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to |
| 31673 | | postprocess_20231221.mrc (#1) coordinates: |
| 31674 | | Matrix rotation and translation |
| 31675 | | -0.47524832 0.87646522 -0.07712165 158.57460902 |
| 31676 | | -0.87868451 -0.47730450 -0.00969196 369.83142480 |
| 31677 | | -0.04530518 0.06315951 0.99697457 112.96672946 |
| 31678 | | Axis 0.04146476 -0.01810893 -0.99897585 |
| 31679 | | Axis point 191.05927194 135.31724824 0.00000000 |
| 31680 | | Rotation angle (degrees) 118.54110551 |
| 31681 | | Shift along axis -112.97302762 |
| 31682 | | |
| 31683 | | |
| 31684 | | > fitmap #25.3 inMap #1 |
| 31685 | | |
| 31686 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map |
| 31687 | | postprocess_20231221.mrc (#1) using 3371 atoms |
| 31688 | | average map value = 0.004368, steps = 60 |
| 31689 | | shifted from previous position = 0.0518 |
| 31690 | | rotated from previous position = 0.0162 degrees |
| 31691 | | atoms outside contour = 732, contour level = 0.0026099 |
| 31692 | | |
| 31693 | | Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to |
| 31694 | | postprocess_20231221.mrc (#1) coordinates: |
| 31695 | | Matrix rotation and translation |
| 31696 | | -0.47535329 0.87643098 -0.07686337 158.54627710 |
| 31697 | | -0.87863301 -0.47739898 -0.00970769 369.87016193 |
| 31698 | | -0.04520261 0.06292011 0.99699437 112.94058206 |
| 31699 | | Axis 0.04133975 -0.01802130 -0.99898261 |
| 31700 | | Axis point 191.03866438 135.36087099 0.00000000 |
| 31701 | | Rotation angle (degrees) 118.54696470 |
| 31702 | | Shift along axis -112.93695699 |
| 31703 | | |
| 31704 | | |
| 31705 | | > hide #25.3 models |
| 31706 | | |
| 31707 | | > show #!25.4 models |
| 31708 | | |
| 31709 | | > fitmap #25.4 inMap #1 |
| 31710 | | |
| 31711 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif D (#25.4) to map |
| 31712 | | postprocess_20231221.mrc (#1) using 706 atoms |
| 31713 | | average map value = 0.005749, steps = 44 |
| 31714 | | shifted from previous position = 0.0483 |
| 31715 | | rotated from previous position = 0.0777 degrees |
| 31716 | | atoms outside contour = 92, contour level = 0.0026099 |
| 31717 | | |
| 31718 | | Position of 5nzr_COPI_coat_leaf_2017.cif D (#25.4) relative to |
| 31719 | | postprocess_20231221.mrc (#1) coordinates: |
| 31720 | | Matrix rotation and translation |
| 31721 | | -0.49175644 0.86568701 -0.09360338 166.01477332 |
| 31722 | | -0.87058599 -0.49079828 0.03459883 365.70599887 |
| 31723 | | -0.01598862 0.09850399 0.99500820 106.55878534 |
| 31724 | | Axis 0.03674439 -0.04462718 -0.99832773 |
| 31725 | | Axis point 190.07626131 130.81897209 0.00000000 |
| 31726 | | Rotation angle (degrees) 119.58889033 |
| 31727 | | Shift along axis -116.60090709 |
| 31728 | | |
| 31729 | | |
| 31730 | | > fitmap #25.4 inMap #1 |
| 31731 | | |
| 31732 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif D (#25.4) to map |
| 31733 | | postprocess_20231221.mrc (#1) using 706 atoms |
| 31734 | | average map value = 0.005749, steps = 44 |
| 31735 | | shifted from previous position = 0.00111 |
| 31736 | | rotated from previous position = 0.00328 degrees |
| 31737 | | atoms outside contour = 92, contour level = 0.0026099 |
| 31738 | | |
| 31739 | | Position of 5nzr_COPI_coat_leaf_2017.cif D (#25.4) relative to |
| 31740 | | postprocess_20231221.mrc (#1) coordinates: |
| 31741 | | Matrix rotation and translation |
| 31742 | | -0.49177182 0.86567510 -0.09363271 166.02076157 |
| 31743 | | -0.87057630 -0.49081850 0.03455563 365.70949473 |
| 31744 | | -0.01604272 0.09850790 0.99500694 106.56690226 |
| 31745 | | Axis 0.03677193 -0.04461348 -0.99832733 |
| 31746 | | Axis point 190.07986149 130.81979432 0.00000000 |
| 31747 | | Rotation angle (degrees) 119.59010474 |
| 31748 | | Shift along axis -116.59931997 |
| 31749 | | |
| 31750 | | |
| 31751 | | > hide #!25.4 models |
| 31752 | | |
| 31753 | | > show #8 models |
| 31754 | | |
| 31755 | | > fitmap #8 inMap #1 |
| 31756 | | |
| 31757 | | Fit molecule CopD_Q5XJY5 (#8) to map postprocess_20231221.mrc (#1) using 1462 |
| 31758 | | atoms |
| 31759 | | average map value = 0.003728, steps = 56 |
| 31760 | | shifted from previous position = 0.0299 |
| 31761 | | rotated from previous position = 0.0476 degrees |
| 31762 | | atoms outside contour = 697, contour level = 0.0026099 |
| 31763 | | |
| 31764 | | Position of CopD_Q5XJY5 (#8) relative to postprocess_20231221.mrc (#1) |
| 31765 | | coordinates: |
| 31766 | | Matrix rotation and translation |
| 31767 | | 0.23860010 0.93122280 0.27548884 -92.93313357 |
| 31768 | | -0.88661028 0.09314362 0.45304137 105.82589483 |
| 31769 | | 0.39622242 -0.35234695 0.84785578 472.48356496 |
| 31770 | | Axis -0.40432771 -0.06061167 -0.91260360 |
| 31771 | | Axis point -102.22586219 189.90213751 0.00000000 |
| 31772 | | Rotation angle (degrees) 84.84791292 |
| 31773 | | Shift along axis -400.02904637 |
| 31774 | | |
| 31775 | | |
| 31776 | | > fitmap #8 inMap #1 |
| 31777 | | |
| 31778 | | Fit molecule CopD_Q5XJY5 (#8) to map postprocess_20231221.mrc (#1) using 1462 |
| 31779 | | atoms |
| 31780 | | average map value = 0.003728, steps = 44 |
| 31781 | | shifted from previous position = 0.0631 |
| 31782 | | rotated from previous position = 0.119 degrees |
| 31783 | | atoms outside contour = 699, contour level = 0.0026099 |
| 31784 | | |
| 31785 | | Position of CopD_Q5XJY5 (#8) relative to postprocess_20231221.mrc (#1) |
| 31786 | | coordinates: |
| 31787 | | Matrix rotation and translation |
| 31788 | | 0.23980372 0.93133895 0.27404734 -92.97708941 |
| 31789 | | -0.88584969 0.09442385 0.45426257 105.58989849 |
| 31790 | | 0.39719582 -0.35169860 0.84766950 472.32860191 |
| 31791 | | Axis -0.40465765 -0.06183049 -0.91237557 |
| 31792 | | Axis point -102.68373743 189.74615125 0.00000000 |
| 31793 | | Rotation angle (degrees) 84.78182200 |
| 31794 | | Shift along axis -399.84586167 |
| 31795 | | |
| 31796 | | |
| 31797 | | > hide #8 models |
| 31798 | | |
| 31799 | | > show #!9 models |
| 31800 | | |
| 31801 | | > fitmap #9 inMap #1 |
| 31802 | | |
| 31803 | | Fit molecule CopG_Q9QZE5 (#9) to map postprocess_20231221.mrc (#1) using 6673 |
| 31804 | | atoms |
| 31805 | | average map value = 0.003524, steps = 48 |
| 31806 | | shifted from previous position = 0.0589 |
| 31807 | | rotated from previous position = 0.0374 degrees |
| 31808 | | atoms outside contour = 3625, contour level = 0.0026099 |
| 31809 | | |
| 31810 | | Position of CopG_Q9QZE5 (#9) relative to postprocess_20231221.mrc (#1) |
| 31811 | | coordinates: |
| 31812 | | Matrix rotation and translation |
| 31813 | | 0.48869765 -0.51171806 -0.70662524 223.57914699 |
| 31814 | | 0.54907211 -0.44902694 0.70490752 282.28473714 |
| 31815 | | -0.67800769 -0.73247486 0.06153171 258.72752902 |
| 31816 | | Axis -0.80450694 -0.01601733 0.59372723 |
| 31817 | | Axis point 0.00000000 245.02451097 103.92196750 |
| 31818 | | Rotation angle (degrees) 116.70511792 |
| 31819 | | Shift along axis -30.77884326 |
| 31820 | | |
| 31821 | | |
| 31822 | | > fitmap #9 inMap #1 |
| 31823 | | |
| 31824 | | Fit molecule CopG_Q9QZE5 (#9) to map postprocess_20231221.mrc (#1) using 6673 |
| 31825 | | atoms |
| 31826 | | average map value = 0.003524, steps = 44 |
| 31827 | | shifted from previous position = 0.0104 |
| 31828 | | rotated from previous position = 0.00895 degrees |
| 31829 | | atoms outside contour = 3621, contour level = 0.0026099 |
| 31830 | | |
| 31831 | | Position of CopG_Q9QZE5 (#9) relative to postprocess_20231221.mrc (#1) |
| 31832 | | coordinates: |
| 31833 | | Matrix rotation and translation |
| 31834 | | 0.48883282 -0.51165712 -0.70657587 223.57062704 |
| 31835 | | 0.54903299 -0.44898430 0.70496515 282.29045776 |
| 31836 | | -0.67794192 -0.73254357 0.06143838 258.72873284 |
| 31837 | | Axis -0.80455852 -0.01602612 0.59365711 |
| 31838 | | Axis point 0.00000000 245.03043827 103.90366345 |
| 31839 | | Rotation angle (degrees) 116.70240841 |
| 31840 | | Shift along axis -30.80352213 |
| 31841 | | |
| 31842 | | |
| 31843 | | > hide #!9 models |
| 31844 | | |
| 31845 | | > show #!25.6 models |
| 31846 | | |
| 31847 | | > fitmap #9 inMap #1 |
| 31848 | | |
| 31849 | | Fit molecule CopG_Q9QZE5 (#9) to map postprocess_20231221.mrc (#1) using 6673 |
| 31850 | | atoms |
| 31851 | | average map value = 0.003524, steps = 40 |
| 31852 | | shifted from previous position = 0.0495 |
| 31853 | | rotated from previous position = 0.0484 degrees |
| 31854 | | atoms outside contour = 3619, contour level = 0.0026099 |
| 31855 | | |
| 31856 | | Position of CopG_Q9QZE5 (#9) relative to postprocess_20231221.mrc (#1) |
| 31857 | | coordinates: |
| 31858 | | Matrix rotation and translation |
| 31859 | | 0.48948640 -0.51114897 -0.70649118 223.51703606 |
| 31860 | | 0.54884026 -0.44899469 0.70510860 282.30192656 |
| 31861 | | -0.67762633 -0.73289187 0.06076234 258.73320035 |
| 31862 | | Axis -0.80484119 -0.01615551 0.59327031 |
| 31863 | | Axis point 0.00000000 245.01224896 103.84167427 |
| 31864 | | Rotation angle (degrees) 116.70346172 |
| 31865 | | Shift along axis -30.95772135 |
| 31866 | | |
| 31867 | | |
| 31868 | | > fitmap #9 inMap #1 |
| 31869 | | |
| 31870 | | Fit molecule CopG_Q9QZE5 (#9) to map postprocess_20231221.mrc (#1) using 6673 |
| 31871 | | atoms |
| 31872 | | average map value = 0.003524, steps = 44 |
| 31873 | | shifted from previous position = 0.0542 |
| 31874 | | rotated from previous position = 0.0567 degrees |
| 31875 | | atoms outside contour = 3613, contour level = 0.0026099 |
| 31876 | | |
| 31877 | | Position of CopG_Q9QZE5 (#9) relative to postprocess_20231221.mrc (#1) |
| 31878 | | coordinates: |
| 31879 | | Matrix rotation and translation |
| 31880 | | 0.48878646 -0.51166535 -0.70660198 223.57207532 |
| 31881 | | 0.54926427 -0.44877614 0.70491754 282.27235203 |
| 31882 | | -0.67778799 -0.73266537 0.06168380 258.74790944 |
| 31883 | | Axis -0.80450784 -0.01612504 0.59372311 |
| 31884 | | Axis point 0.00000000 245.04686971 103.90184910 |
| 31885 | | Rotation angle (degrees) 116.68935055 |
| 31886 | | Shift along axis -30.79252770 |
| 31887 | | |
| 31888 | | |
| 31889 | | > fitmap #9 inMap #1 |
| 31890 | | |
| 31891 | | Fit molecule CopG_Q9QZE5 (#9) to map postprocess_20231221.mrc (#1) using 6673 |
| 31892 | | atoms |
| 31893 | | average map value = 0.003524, steps = 48 |
| 31894 | | shifted from previous position = 0.014 |
| 31895 | | rotated from previous position = 0.0161 degrees |
| 31896 | | atoms outside contour = 3623, contour level = 0.0026099 |
| 31897 | | |
| 31898 | | Position of CopG_Q9QZE5 (#9) relative to postprocess_20231221.mrc (#1) |
| 31899 | | coordinates: |
| 31900 | | Matrix rotation and translation |
| 31901 | | 0.48880777 -0.51161079 -0.70662675 223.57376434 |
| 31902 | | 0.54909324 -0.44899243 0.70491305 282.28181295 |
| 31903 | | -0.67791119 -0.73257094 0.06145103 258.72889521 |
| 31904 | | Axis -0.80454933 -0.01607189 0.59366832 |
| 31905 | | Axis point 0.00000000 245.02207305 103.91147262 |
| 31906 | | Rotation angle (degrees) 116.70306678 |
| 31907 | | Shift along axis -30.81377494 |
| 31908 | | |
| 31909 | | |
| 31910 | | > fitmap #9 inMap #1 |
| 31911 | | |
| 31912 | | Fit molecule CopG_Q9QZE5 (#9) to map postprocess_20231221.mrc (#1) using 6673 |
| 31913 | | atoms |
| 31914 | | average map value = 0.003524, steps = 40 |
| 31915 | | shifted from previous position = 0.0168 |
| 31916 | | rotated from previous position = 0.00674 degrees |
| 31917 | | atoms outside contour = 3620, contour level = 0.0026099 |
| 31918 | | |
| 31919 | | Position of CopG_Q9QZE5 (#9) relative to postprocess_20231221.mrc (#1) |
| 31920 | | coordinates: |
| 31921 | | Matrix rotation and translation |
| 31922 | | 0.48884254 -0.51164875 -0.70657521 223.56186580 |
| 31923 | | 0.54899521 -0.44902301 0.70496992 282.29147811 |
| 31924 | | -0.67796550 -0.73252570 0.06139116 258.73202214 |
| 31925 | | Axis -0.80456844 -0.01601289 0.59364401 |
| 31926 | | Axis point 0.00000000 245.02601416 103.90513276 |
| 31927 | | Rotation angle (degrees) 116.70485206 |
| 31928 | | Shift along axis -30.79641215 |
| 31929 | | |
| 31930 | | |
| 31931 | | > hide #!25.6 models |
| 31932 | | |
| 31933 | | > show #!25.7 models |
| 31934 | | |
| 31935 | | > fitmap #25.7 inMap #1 |
| 31936 | | |
| 31937 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif K (#25.7) to map |
| 31938 | | postprocess_20231221.mrc (#1) using 2239 atoms |
| 31939 | | average map value = 0.005453, steps = 68 |
| 31940 | | shifted from previous position = 5.09 |
| 31941 | | rotated from previous position = 3.83 degrees |
| 31942 | | atoms outside contour = 897, contour level = 0.0026099 |
| 31943 | | |
| 31944 | | Position of 5nzr_COPI_coat_leaf_2017.cif K (#25.7) relative to |
| 31945 | | postprocess_20231221.mrc (#1) coordinates: |
| 31946 | | Matrix rotation and translation |
| 31947 | | -0.52809778 0.84897184 -0.01896147 162.25143821 |
| 31948 | | -0.84908305 -0.52756007 0.02717232 368.47098555 |
| 31949 | | 0.01306522 0.03044950 0.99945091 106.79493761 |
| 31950 | | Axis 0.00192961 -0.01885742 -0.99982032 |
| 31951 | | Axis point 183.03405856 138.07720643 0.00000000 |
| 31952 | | Rotation angle (degrees) 121.87740335 |
| 31953 | | Shift along axis -113.41107829 |
| 31954 | | |
| 31955 | | |
| 31956 | | > fitmap #25.7 inMap #1 |
| 31957 | | |
| 31958 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif K (#25.7) to map |
| 31959 | | postprocess_20231221.mrc (#1) using 2239 atoms |
| 31960 | | average map value = 0.005454, steps = 44 |
| 31961 | | shifted from previous position = 0.0759 |
| 31962 | | rotated from previous position = 0.124 degrees |
| 31963 | | atoms outside contour = 905, contour level = 0.0026099 |
| 31964 | | |
| 31965 | | Position of 5nzr_COPI_coat_leaf_2017.cif K (#25.7) relative to |
| 31966 | | postprocess_20231221.mrc (#1) coordinates: |
| 31967 | | Matrix rotation and translation |
| 31968 | | -0.52840627 0.84882470 -0.01683532 162.07563992 |
| 31969 | | -0.84887694 -0.52790507 0.02691033 368.52314419 |
| 31970 | | 0.01395470 0.02851070 0.99949607 107.05091473 |
| 31971 | | Axis 0.00094251 -0.01813331 -0.99983513 |
| 31972 | | Axis point 182.88564640 138.23925690 0.00000000 |
| 31973 | | Rotation angle (degrees) 121.89792835 |
| 31974 | | Shift along axis -113.56305017 |
| 31975 | | |
| 31976 | | |
| 31977 | | > hide #!25.7 models |
| 31978 | | |
| 31979 | | > show #25.8 models |
| 31980 | | |
| 31981 | | > fitmap #25.8 inMap #1 |
| 31982 | | |
| 31983 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif L (#25.8) to map |
| 31984 | | postprocess_20231221.mrc (#1) using 555 atoms |
| 31985 | | average map value = 0.009445, steps = 72 |
| 31986 | | shifted from previous position = 4.8 |
| 31987 | | rotated from previous position = 5.37 degrees |
| 31988 | | atoms outside contour = 61, contour level = 0.0026099 |
| 31989 | | |
| 31990 | | Position of 5nzr_COPI_coat_leaf_2017.cif L (#25.8) relative to |
| 31991 | | postprocess_20231221.mrc (#1) coordinates: |
| 31992 | | Matrix rotation and translation |
| 31993 | | -0.50953081 0.86016443 -0.02225986 156.84466949 |
| 31994 | | -0.86007521 -0.50837107 0.04277251 364.92411960 |
| 31995 | | 0.02547512 0.04093906 0.99883682 103.35018694 |
| 31996 | | Axis -0.00106540 -0.02773834 -0.99961465 |
| 31997 | | Axis point 181.51446483 136.34374262 0.00000000 |
| 31998 | | Rotation angle (degrees) 120.63269672 |
| 31999 | | Shift along axis -113.59985176 |
| 32000 | | |
| 32001 | | |
| 32002 | | > hide #25.8 models |
| 32003 | | |
| 32004 | | > show #25.9 models |
| 32005 | | |
| 32006 | | > fitmap #25.9 inMap #1 |
| 32007 | | |
| 32008 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif M (#25.9) to map |
| 32009 | | postprocess_20231221.mrc (#1) using 635 atoms |
| 32010 | | average map value = 0.005017, steps = 64 |
| 32011 | | shifted from previous position = 2.67 |
| 32012 | | rotated from previous position = 5.57 degrees |
| 32013 | | atoms outside contour = 32, contour level = 0.0026099 |
| 32014 | | |
| 32015 | | Position of 5nzr_COPI_coat_leaf_2017.cif M (#25.9) relative to |
| 32016 | | postprocess_20231221.mrc (#1) coordinates: |
| 32017 | | Matrix rotation and translation |
| 32018 | | -0.54245973 0.83717279 0.06985093 157.30691966 |
| 32019 | | -0.83809913 -0.54501467 0.02342739 368.53850958 |
| 32020 | | 0.05768256 -0.04583358 0.99728230 115.07742252 |
| 32021 | | Axis -0.04130675 0.00725713 -0.99912016 |
| 32022 | | Axis point 176.58181683 143.30451871 0.00000000 |
| 32023 | | Rotation angle (degrees) 123.03122791 |
| 32024 | | Shift along axis -118.79947888 |
| 32025 | | |
| 32026 | | |
| 32027 | | > hide #25.9 models |
| 32028 | | |
| 32029 | | > show #25.10 models |
| 32030 | | |
| 32031 | | > fitmap #25.10 inMap #1 |
| 32032 | | |
| 32033 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif R (#25.10) to map |
| 32034 | | postprocess_20231221.mrc (#1) using 635 atoms |
| 32035 | | average map value = 0.005793, steps = 60 |
| 32036 | | shifted from previous position = 1.15 |
| 32037 | | rotated from previous position = 1.46 degrees |
| 32038 | | atoms outside contour = 78, contour level = 0.0026099 |
| 32039 | | |
| 32040 | | Position of 5nzr_COPI_coat_leaf_2017.cif R (#25.10) relative to |
| 32041 | | postprocess_20231221.mrc (#1) coordinates: |
| 32042 | | Matrix rotation and translation |
| 32043 | | -0.56117641 0.82769249 -0.00248451 165.77495010 |
| 32044 | | -0.82682250 -0.56071939 -0.04425285 376.49759487 |
| 32045 | | -0.03802086 -0.02277941 0.99901727 120.78977355 |
| 32046 | | Axis 0.01297461 0.02147165 -0.99968526 |
| 32047 | | Axis point 184.09818845 145.22408755 0.00000000 |
| 32048 | | Rotation angle (degrees) 124.15539123 |
| 32049 | | Shift along axis -110.51686734 |
| 32050 | | |
| 32051 | | |
| 32052 | | > fitmap #25.10 inMap #1 |
| 32053 | | |
| 32054 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif R (#25.10) to map |
| 32055 | | postprocess_20231221.mrc (#1) using 635 atoms |
| 32056 | | average map value = 0.005793, steps = 44 |
| 32057 | | shifted from previous position = 0.013 |
| 32058 | | rotated from previous position = 0.0303 degrees |
| 32059 | | atoms outside contour = 78, contour level = 0.0026099 |
| 32060 | | |
| 32061 | | Position of 5nzr_COPI_coat_leaf_2017.cif R (#25.10) relative to |
| 32062 | | postprocess_20231221.mrc (#1) coordinates: |
| 32063 | | Matrix rotation and translation |
| 32064 | | -0.56102005 0.82779773 -0.00272041 165.76483812 |
| 32065 | | -0.82693876 -0.56058191 -0.04382006 376.44606227 |
| 32066 | | -0.03779916 -0.02233431 0.99903573 120.69649921 |
| 32067 | | Axis 0.01298038 0.02119244 -0.99969115 |
| 32068 | | Axis point 184.09340805 145.17307910 0.00000000 |
| 32069 | | Rotation angle (degrees) 124.14458036 |
| 32070 | | Shift along axis -110.52971987 |
| 32071 | | |
| 32072 | | |
| 32073 | | > hide #25.10 models |
| 32074 | | |
| 32075 | | > show #25.11 models |
| 32076 | | |
| 32077 | | > fitmap #25.11 inMap #1 |
| 32078 | | |
| 32079 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif Z (#25.11) to map |
| 32080 | | postprocess_20231221.mrc (#1) using 555 atoms |
| 32081 | | average map value = 0.006618, steps = 56 |
| 32082 | | shifted from previous position = 0.987 |
| 32083 | | rotated from previous position = 4.56 degrees |
| 32084 | | atoms outside contour = 13, contour level = 0.0026099 |
| 32085 | | |
| 32086 | | Position of 5nzr_COPI_coat_leaf_2017.cif Z (#25.11) relative to |
| 32087 | | postprocess_20231221.mrc (#1) coordinates: |
| 32088 | | Matrix rotation and translation |
| 32089 | | -0.51534999 0.85618388 -0.03692622 163.83052471 |
| 32090 | | -0.85697829 -0.51478944 0.02408388 365.15179210 |
| 32091 | | 0.00161100 0.04405659 0.99902773 110.02746277 |
| 32092 | | Axis 0.01165465 -0.02248757 -0.99967919 |
| 32093 | | Axis point 185.07392398 134.62747847 0.00000000 |
| 32094 | | Rotation angle (degrees) 121.03461621 |
| 32095 | | Shift along axis -116.29415434 |
| 32096 | | |
| 32097 | | |
| 32098 | | > fitmap #25.11 inMap #1 |
| 32099 | | |
| 32100 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif Z (#25.11) to map |
| 32101 | | postprocess_20231221.mrc (#1) using 555 atoms |
| 32102 | | average map value = 0.006619, steps = 56 |
| 32103 | | shifted from previous position = 0.0125 |
| 32104 | | rotated from previous position = 0.0228 degrees |
| 32105 | | atoms outside contour = 13, contour level = 0.0026099 |
| 32106 | | |
| 32107 | | Position of 5nzr_COPI_coat_leaf_2017.cif Z (#25.11) relative to |
| 32108 | | postprocess_20231221.mrc (#1) coordinates: |
| 32109 | | Matrix rotation and translation |
| 32110 | | -0.51510414 0.85634315 -0.03666222 163.77587716 |
| 32111 | | -0.85712590 -0.51454655 0.02402157 365.14477906 |
| 32112 | | 0.00170628 0.04379774 0.99903895 110.05636752 |
| 32113 | | Axis 0.01153794 -0.02238519 -0.99968284 |
| 32114 | | Axis point 185.07618372 134.63281353 0.00000000 |
| 32115 | | Rotation angle (degrees) 121.01790200 |
| 32116 | | Shift along axis -116.30566190 |
| 32117 | | |
| 32118 | | |
| 32119 | | > hide #25.11 models |
| 32120 | | |
| 32121 | | > hide #!26.1 models |
| 32122 | | |
| 32123 | | > show #!26.1 models |
| 32124 | | |
| 32125 | | > hide #!26.1 models |
| 32126 | | |
| 32127 | | > show #!26.1 models |
| 32128 | | |
| 32129 | | > fitmap #26.1 inMap #1 |
| 32130 | | |
| 32131 | | Fit molecule 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#26.1) to map |
| 32132 | | postprocess_20231221.mrc (#1) using 1306 atoms |
| 32133 | | average map value = 0.00438, steps = 48 |
| 32134 | | shifted from previous position = 0.0519 |
| 32135 | | rotated from previous position = 0.127 degrees |
| 32136 | | atoms outside contour = 335, contour level = 0.0026099 |
| 32137 | | |
| 32138 | | Position of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#26.1) relative to |
| 32139 | | postprocess_20231221.mrc (#1) coordinates: |
| 32140 | | Matrix rotation and translation |
| 32141 | | -0.18847588 0.19690185 -0.96213642 281.01818938 |
| 32142 | | 0.68066320 0.73240949 0.01655086 273.62397864 |
| 32143 | | 0.70793675 -0.65177142 -0.27206537 179.30959236 |
| 32144 | | Axis -0.35878329 -0.89656497 0.25970329 |
| 32145 | | Axis point -12.14308848 0.00000000 195.36315833 |
| 32146 | | Rotation angle (degrees) 111.35010673 |
| 32147 | | Shift along axis -299.57901651 |
| 32148 | | |
| 32149 | | |
| 32150 | | > hide #!26.2 models |
| 32151 | | |
| 32152 | | > show #!26.2 models |
| 32153 | | |
| 32154 | | > fitmap #26.2 inMap #1 |
| 32155 | | |
| 32156 | | Fit molecule 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#26.2) to map |
| 32157 | | postprocess_20231221.mrc (#1) using 2069 atoms |
| 32158 | | average map value = 0.005973, steps = 40 |
| 32159 | | shifted from previous position = 0.0411 |
| 32160 | | rotated from previous position = 0.0333 degrees |
| 32161 | | atoms outside contour = 595, contour level = 0.0026099 |
| 32162 | | |
| 32163 | | Position of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#26.2) relative to |
| 32164 | | postprocess_20231221.mrc (#1) coordinates: |
| 32165 | | Matrix rotation and translation |
| 32166 | | -0.25112743 0.19896442 -0.94728463 280.14955795 |
| 32167 | | 0.70125958 0.71197797 -0.03636418 273.60673566 |
| 32168 | | 0.66721061 -0.67342447 -0.31832291 179.23078798 |
| 32169 | | Axis -0.35257877 -0.89353670 0.27799349 |
| 32170 | | Axis point -6.18676783 0.00000000 194.69723932 |
| 32171 | | Rotation angle (degrees) 115.38738201 |
| 32172 | | Shift along axis -293.42745438 |
| 32173 | | |
| 32174 | | |
| 32175 | | > fitmap #26.3 inMap #1 |
| 32176 | | |
| 32177 | | Fit molecule 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#26.3) to map |
| 32178 | | postprocess_20231221.mrc (#1) using 1128 atoms |
| 32179 | | average map value = 0.004508, steps = 44 |
| 32180 | | shifted from previous position = 0.0401 |
| 32181 | | rotated from previous position = 0.0984 degrees |
| 32182 | | atoms outside contour = 321, contour level = 0.0026099 |
| 32183 | | |
| 32184 | | Position of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#26.3) relative to |
| 32185 | | postprocess_20231221.mrc (#1) coordinates: |
| 32186 | | Matrix rotation and translation |
| 32187 | | -0.24788043 0.18304448 -0.95134116 278.85298200 |
| 32188 | | 0.71427199 0.69794712 -0.05182019 272.73112847 |
| 32189 | | 0.65450043 -0.69236155 -0.30375098 178.06704899 |
| 32190 | | Axis -0.35415396 -0.88786639 0.29371456 |
| 32191 | | Axis point -8.77830869 0.00000000 197.19185440 |
| 32192 | | Rotation angle (degrees) 115.26732127 |
| 32193 | | Shift along axis -288.60480618 |
| 32194 | | |
| 32195 | | |
| 32196 | | > fitmap #26.3 inMap #1 |
| 32197 | | |
| 32198 | | Fit molecule 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#26.3) to map |
| 32199 | | postprocess_20231221.mrc (#1) using 1128 atoms |
| 32200 | | average map value = 0.004508, steps = 64 |
| 32201 | | shifted from previous position = 0.012 |
| 32202 | | rotated from previous position = 0.0352 degrees |
| 32203 | | atoms outside contour = 318, contour level = 0.0026099 |
| 32204 | | |
| 32205 | | Position of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#26.3) relative to |
| 32206 | | postprocess_20231221.mrc (#1) coordinates: |
| 32207 | | Matrix rotation and translation |
| 32208 | | -0.24796808 0.18246169 -0.95143027 278.83442524 |
| 32209 | | 0.71425394 0.69792925 -0.05230738 272.75307943 |
| 32210 | | 0.65448693 -0.69253338 -0.30338816 178.04496522 |
| 32211 | | Axis -0.35395583 -0.88784859 0.29400706 |
| 32212 | | Axis point -8.79177732 0.00000000 197.26697225 |
| 32213 | | Rotation angle (degrees) 115.25917032 |
| 32214 | | Shift along axis -288.51202928 |
| 32215 | | |
| 32216 | | |
| 32217 | | > hide #!26 models |
| 32218 | | |
| 32219 | | > hide #!26.1 models |
| 32220 | | |
| 32221 | | > hide #!26.2 models |
| 32222 | | |
| 32223 | | > hide #26.3 models |
| 32224 | | |
| 32225 | | > hide #!25 models |
| 32226 | | |
| 32227 | | > show #24 models |
| 32228 | | |
| 32229 | | > fitmap #24 inMap #1 |
| 32230 | | |
| 32231 | | Fit molecule 3kn1_Golph3_xtal.cif (#24) to map postprocess_20231221.mrc (#1) |
| 32232 | | using 1934 atoms |
| 32233 | | average map value = 0.003249, steps = 28 |
| 32234 | | shifted from previous position = 0.0375 |
| 32235 | | rotated from previous position = 0.0176 degrees |
| 32236 | | atoms outside contour = 520, contour level = 0.0026099 |
| 32237 | | |
| 32238 | | Position of 3kn1_Golph3_xtal.cif (#24) relative to postprocess_20231221.mrc |
| 32239 | | (#1) coordinates: |
| 32240 | | Matrix rotation and translation |
| 32241 | | 0.23176072 0.95684027 -0.17533874 148.11891218 |
| 32242 | | 0.01096390 -0.18280423 -0.98308820 219.61211962 |
| 32243 | | -0.97271104 0.22591883 -0.05285755 161.82170270 |
| 32244 | | Axis 0.69893176 0.46096409 -0.54681487 |
| 32245 | | Axis point 0.00000000 -31.89182107 207.24160583 |
| 32246 | | Rotation angle (degrees) 120.12912994 |
| 32247 | | Shift along axis 116.27179801 |
| 32248 | | |
| 32249 | | |
| 32250 | | > fitmap #24 inMap #1 |
| 32251 | | |
| 32252 | | Fit molecule 3kn1_Golph3_xtal.cif (#24) to map postprocess_20231221.mrc (#1) |
| 32253 | | using 1934 atoms |
| 32254 | | average map value = 0.00325, steps = 28 |
| 32255 | | shifted from previous position = 0.0392 |
| 32256 | | rotated from previous position = 0.0284 degrees |
| 32257 | | atoms outside contour = 520, contour level = 0.0026099 |
| 32258 | | |
| 32259 | | Position of 3kn1_Golph3_xtal.cif (#24) relative to postprocess_20231221.mrc |
| 32260 | | (#1) coordinates: |
| 32261 | | Matrix rotation and translation |
| 32262 | | 0.23211744 0.95670781 -0.17558947 148.15930491 |
| 32263 | | 0.01108837 -0.18311074 -0.98302976 219.64929055 |
| 32264 | | -0.97262456 0.22623135 -0.05311152 161.80787421 |
| 32265 | | Axis 0.69912644 0.46080066 -0.54670373 |
| 32266 | | Axis point 0.00000000 -31.82049284 207.20523321 |
| 32267 | | Rotation angle (degrees) 120.13587974 |
| 32268 | | Shift along axis 116.33565695 |
| 32269 | | |
| 32270 | | |
| 32271 | | > show #11 models |
| 32272 | | |
| 32273 | | > hide #24 models |
| 32274 | | |
| 32275 | | > fitmap #11 inMap #1 |
| 32276 | | |
| 32277 | | Fit molecule Golph3_ Q9CRA5.pdb (#11) to map postprocess_20231221.mrc (#1) |
| 32278 | | using 2367 atoms |
| 32279 | | average map value = 0.0031, steps = 48 |
| 32280 | | shifted from previous position = 0.0446 |
| 32281 | | rotated from previous position = 0.0524 degrees |
| 32282 | | atoms outside contour = 802, contour level = 0.0026099 |
| 32283 | | |
| 32284 | | Position of Golph3_ Q9CRA5.pdb (#11) relative to postprocess_20231221.mrc (#1) |
| 32285 | | coordinates: |
| 32286 | | Matrix rotation and translation |
| 32287 | | 0.66114170 -0.23531581 0.71240306 198.02073230 |
| 32288 | | -0.68852537 -0.56749706 0.45153062 233.21090068 |
| 32289 | | 0.29803435 -0.78903330 -0.53721687 191.32348518 |
| 32290 | | Axis -0.89621076 0.29934910 -0.32740859 |
| 32291 | | Axis point 0.00000000 180.07923499 -4.24272432 |
| 32292 | | Rotation angle (degrees) 136.20214329 |
| 32293 | | Shift along axis -170.29778917 |
| 32294 | | |
| 32295 | | |
| 32296 | | > fitmap #11 inMap #1 |
| 32297 | | |
| 32298 | | Fit molecule Golph3_ Q9CRA5.pdb (#11) to map postprocess_20231221.mrc (#1) |
| 32299 | | using 2367 atoms |
| 32300 | | average map value = 0.0031, steps = 40 |
| 32301 | | shifted from previous position = 0.0266 |
| 32302 | | rotated from previous position = 0.0483 degrees |
| 32303 | | atoms outside contour = 804, contour level = 0.0026099 |
| 32304 | | |
| 32305 | | Position of Golph3_ Q9CRA5.pdb (#11) relative to postprocess_20231221.mrc (#1) |
| 32306 | | coordinates: |
| 32307 | | Matrix rotation and translation |
| 32308 | | 0.66078286 -0.23607293 0.71248549 198.03562590 |
| 32309 | | -0.68900494 -0.56730843 0.45103584 233.22569948 |
| 32310 | | 0.29772167 -0.78894278 -0.53752310 191.33298066 |
| 32311 | | Axis -0.89610969 0.29974217 -0.32732561 |
| 32312 | | Axis point 0.00000000 180.13836515 -4.22165558 |
| 32313 | | Rotation angle (degrees) 136.22186734 |
| 32314 | | Shift along axis -170.18225266 |
| 32315 | | |
| 32316 | | |
| 32317 | | > hide #11 models |
| 32318 | | |
| 32319 | | > volume #1 level 0.003696 |
| 32320 | | |
| 32321 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 32322 | | > dataset/Chimera sessions/20240212_leaf_fitting_v6.cxs" |
| 32323 | | |
| 32324 | | > open "/Users/becca/Desktop/Postdoc/Structure files/COPI |
| 32325 | | > structures/3mkq_yeast_alpha_betaprimeCOPI.cif" |
| 32326 | | |
| 32327 | | 3mkq_yeast_alpha_betaprimeCOPI.cif title: |
| 32328 | | Crystal structure of yeast alpha/betaprime-COP subcomplex of the COPI |
| 32329 | | vesicular coat [more info...] |
| 32330 | | |
| 32331 | | Chain information for 3mkq_yeast_alpha_betaprimeCOPI.cif #27 |
| 32332 | | --- |
| 32333 | | Chain | Description | UniProt |
| 32334 | | A C E | Coatomer beta'-subunit | A6ZU46_YEAS7 1-814 |
| 32335 | | B D F | Coatomer subunit alpha | COPA_YEAST 642-818 |
| 32336 | | |
| 32337 | | 3mkq_yeast_alpha_betaprimeCOPI.cif mmCIF Assemblies |
| 32338 | | --- |
| 32339 | | 1| author_defined_assembly |
| 32340 | | 2| software_defined_assembly |
| 32341 | | 3| software_defined_assembly |
| 32342 | | 4| software_defined_assembly |
| 32343 | | |
| 32344 | | |
| 32345 | | > select add #27 |
| 32346 | | |
| 32347 | | 23730 atoms, 23992 bonds, 2 pseudobonds, 3231 residues, 2 models selected |
| 32348 | | |
| 32349 | | > hide sel atoms |
| 32350 | | |
| 32351 | | > show sel cartoons |
| 32352 | | |
| 32353 | | > ui mousemode right "translate selected models" |
| 32354 | | |
| 32355 | | > view matrix models #27,1,0,0,392.67,0,1,0,238.34,0,0,1,282.33 |
| 32356 | | |
| 32357 | | > view matrix models #27,1,0,0,417.09,0,1,0,317.03,0,0,1,269.19 |
| 32358 | | |
| 32359 | | > view matrix models #27,1,0,0,396.35,0,1,0,248.96,0,0,1,148.11 |
| 32360 | | |
| 32361 | | > view matrix models #27,1,0,0,352.36,0,1,0,262.58,0,0,1,140.07 |
| 32362 | | |
| 32363 | | > select subtract #27 |
| 32364 | | |
| 32365 | | Nothing selected |
| 32366 | | |
| 32367 | | > select add #27 |
| 32368 | | |
| 32369 | | 23730 atoms, 23992 bonds, 2 pseudobonds, 3231 residues, 2 models selected |
| 32370 | | |
| 32371 | | > select subtract #27 |
| 32372 | | |
| 32373 | | Nothing selected |
| 32374 | | |
| 32375 | | > hide #!27 models |
| 32376 | | |
| 32377 | | > open "/Users/becca/Desktop/Postdoc/Structure files/COPI |
| 32378 | | > structures/3mkr_yeast_alpha_epsilonCOPI.cif" |
| 32379 | | |
| 32380 | | 3mkr_yeast_alpha_epsilonCOPI.cif title: |
| 32381 | | Crystal structure of yeast alpha/epsilon-COP subcomplex of the COPI vesicular |
| 32382 | | coat [more info...] |
| 32383 | | |
| 32384 | | Chain information for 3mkr_yeast_alpha_epsilonCOPI.cif #28 |
| 32385 | | --- |
| 32386 | | Chain | Description | UniProt |
| 32387 | | A | Coatomer subunit epsilon | COPE_BOVIN 17-307 |
| 32388 | | B | Coatomer subunit alpha | COPA_BOVIN 905-1224 |
| 32389 | | |
| 32390 | | |
| 32391 | | > select add #28 |
| 32392 | | |
| 32393 | | 4908 atoms, 4974 bonds, 645 residues, 1 model selected |
| 32394 | | |
| 32395 | | > view matrix models #28,1,0,0,338.36,0,1,0,298.71,0,0,1,206.93 |
| 32396 | | |
| 32397 | | > view matrix models #28,1,0,0,261.35,0,1,0,284.84,0,0,1,295.86 |
| 32398 | | |
| 32399 | | > select subtract #28 |
| 32400 | | |
| 32401 | | Nothing selected |
| 32402 | | |
| 32403 | | > hide #28 models |
| 32404 | | |
| 32405 | | > open "/Users/becca/Desktop/Postdoc/Structure files/COPI |
| 32406 | | > structures/1pzd_Cow_Cterm_COPI_gamma.cif" |
| 32407 | | |
| 32408 | | 1pzd_Cow_Cterm_COPI_gamma.cif title: |
| 32409 | | Structural Identification of a conserved appendage domain in the carboxyl- |
| 32410 | | terminus of the COPI gamma-subunit. [more info...] |
| 32411 | | |
| 32412 | | Chain information for 1pzd_Cow_Cterm_COPI_gamma.cif #29 |
| 32413 | | --- |
| 32414 | | Chain | Description | UniProt |
| 32415 | | A | Coatomer gamma subunit | COPG_BOVIN 555-874 |
| 32416 | | |
| 32417 | | Non-standard residues in 1pzd_Cow_Cterm_COPI_gamma.cif #29 |
| 32418 | | --- |
| 32419 | | SO4 — sulfate ion |
| 32420 | | |
| 32421 | | |
| 32422 | | > select add #29 |
| 32423 | | |
| 32424 | | 2270 atoms, 2156 bonds, 426 residues, 1 model selected |
| 32425 | | |
| 32426 | | > view matrix models #29,1,0,0,234.68,0,1,0,350.63,0,0,1,60.953 |
| 32427 | | |
| 32428 | | > view matrix models #29,1,0,0,415.01,0,1,0,436.04,0,0,1,263.89 |
| 32429 | | |
| 32430 | | > view matrix models #29,1,0,0,353.18,0,1,0,323.73,0,0,1,357.15 |
| 32431 | | |
| 32432 | | > select subtract #29 |
| 32433 | | |
| 32434 | | Nothing selected |
| 32435 | | |
| 32436 | | > hide #29 models |
| 32437 | | |
| 32438 | | > open "/Users/becca/Desktop/Postdoc/Structure files/COPI |
| 32439 | | > structures/4j87_yeast_alphaCOPI.cif" |
| 32440 | | |
| 32441 | | 4j87_yeast_alphaCOPI.cif title: |
| 32442 | | Crystal structure of alpha-COP [more info...] |
| 32443 | | |
| 32444 | | Chain information for 4j87_yeast_alphaCOPI.cif #30 |
| 32445 | | --- |
| 32446 | | Chain | Description | UniProt |
| 32447 | | A | coatomer subunit alpha | COPA_SCHPO 1-327 |
| 32448 | | |
| 32449 | | |
| 32450 | | > select add #30 |
| 32451 | | |
| 32452 | | 2737 atoms, 2622 bonds, 1 pseudobond, 505 residues, 2 models selected |
| 32453 | | |
| 32454 | | > view matrix models #30,1,0,0,419.29,0,1,0,126.53,0,0,1,226.78 |
| 32455 | | |
| 32456 | | > view matrix models #30,1,0,0,249.55,0,1,0,194.59,0,0,1,357.2 |
| 32457 | | |
| 32458 | | > view matrix models #30,1,0,0,295.54,0,1,0,289.31,0,0,1,436.41 |
| 32459 | | |
| 32460 | | > view matrix models #30,1,0,0,332.12,0,1,0,305.75,0,0,1,378.14 |
| 32461 | | |
| 32462 | | > select subtract #30 |
| 32463 | | |
| 32464 | | Nothing selected |
| 32465 | | |
| 32466 | | > hide #!30 models |
| 32467 | | |
| 32468 | | > open "/Users/becca/Desktop/Postdoc/Structure files/COPI |
| 32469 | | > structures/5mc7_human_zeta1COPI.cif" |
| 32470 | | |
| 32471 | | 5mc7_human_zeta1COPI.cif title: |
| 32472 | | Crystal structure of Truncated Human Coatomer Protein Complex, subunit Z1 |
| 32473 | | (CopZ1) [more info...] |
| 32474 | | |
| 32475 | | Chain information for 5mc7_human_zeta1COPI.cif #31 |
| 32476 | | --- |
| 32477 | | Chain | Description | UniProt |
| 32478 | | A B | Coatomer subunit zeta-1 | COPZ1_HUMAN 7-150 |
| 32479 | | |
| 32480 | | 5mc7_human_zeta1COPI.cif mmCIF Assemblies |
| 32481 | | --- |
| 32482 | | 1| author_defined_assembly |
| 32483 | | 2| author_defined_assembly |
| 32484 | | |
| 32485 | | |
| 32486 | | > select add #31 |
| 32487 | | |
| 32488 | | 2340 atoms, 2256 bonds, 394 residues, 1 model selected |
| 32489 | | |
| 32490 | | > view matrix models #31,1,0,0,330.02,0,1,0,82.452,0,0,1,370.35 |
| 32491 | | |
| 32492 | | > view matrix models #31,1,0,0,244.56,0,1,0,227.11,0,0,1,313.43 |
| 32493 | | |
| 32494 | | > view matrix models #31,1,0,0,289.31,0,1,0,324.83,0,0,1,331.93 |
| 32495 | | |
| 32496 | | > select subtract #31 |
| 32497 | | |
| 32498 | | Nothing selected |
| 32499 | | |
| 32500 | | > hide #31 models |
| 32501 | | |
| 32502 | | > open "/Users/becca/Desktop/Postdoc/Structure files/COPI |
| 32503 | | > structures/5mu7_Thermophila_beta_deltaCOPI.cif" |
| 32504 | | |
| 32505 | | 5mu7_Thermophila_beta_deltaCOPI.cif title: |
| 32506 | | Crystal Structure of the beta/delta-COPI Core Complex [more info...] |
| 32507 | | |
| 32508 | | Chain information for 5mu7_Thermophila_beta_deltaCOPI.cif #32 |
| 32509 | | --- |
| 32510 | | Chain | Description | UniProt |
| 32511 | | A | Coatomer subunit beta | G0S6G7_CHATD 19-391 |
| 32512 | | B | Coatomer subunit delta-like protein | G0S6I4_CHATD 1-175 |
| 32513 | | |
| 32514 | | |
| 32515 | | > select add #32 |
| 32516 | | |
| 32517 | | 4213 atoms, 4232 bonds, 565 residues, 1 model selected |
| 32518 | | |
| 32519 | | > view matrix models #32,1,0,0,355.8,0,1,0,175.3,0,0,1,23.729 |
| 32520 | | |
| 32521 | | > view matrix models #32,1,0,0,206.13,0,1,0,267.92,0,0,1,311.94 |
| 32522 | | |
| 32523 | | > view matrix models #32,1,0,0,310.15,0,1,0,268.59,0,0,1,354.79 |
| 32524 | | |
| 32525 | | > select subtract #32 |
| 32526 | | |
| 32527 | | Nothing selected |
| 32528 | | |
| 32529 | | > hide #32 models |
| 32530 | | |
| 32531 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 32532 | | > dataset/Chimera sessions/20240212_leaf_fitting_v7.cxs" |
| 32533 | | |
| 32534 | | > show #!26 models |
| 32535 | | |
| 32536 | | > show #!26.1 models |
| 32537 | | |
| 32538 | | > show #!26.2 models |
| 32539 | | |
| 32540 | | > show #26.3 models |
| 32541 | | |
| 32542 | | > hide #!26 models |
| 32543 | | |
| 32544 | | > show #!27 models |
| 32545 | | |
| 32546 | | > split #27 chains |
| 32547 | | |
| 32548 | | Split 3mkq_yeast_alpha_betaprimeCOPI.cif (#27) into 6 models |
| 32549 | | Chain information for 3mkq_yeast_alpha_betaprimeCOPI.cif A #27.1 |
| 32550 | | --- |
| 32551 | | Chain | Description |
| 32552 | | A | No description available |
| 32553 | | |
| 32554 | | Chain information for 3mkq_yeast_alpha_betaprimeCOPI.cif B #27.2 |
| 32555 | | --- |
| 32556 | | Chain | Description |
| 32557 | | B | No description available |
| 32558 | | |
| 32559 | | Chain information for 3mkq_yeast_alpha_betaprimeCOPI.cif C #27.3 |
| 32560 | | --- |
| 32561 | | Chain | Description |
| 32562 | | C | No description available |
| 32563 | | |
| 32564 | | Chain information for 3mkq_yeast_alpha_betaprimeCOPI.cif D #27.4 |
| 32565 | | --- |
| 32566 | | Chain | Description |
| 32567 | | D | No description available |
| 32568 | | |
| 32569 | | Chain information for 3mkq_yeast_alpha_betaprimeCOPI.cif E #27.5 |
| 32570 | | --- |
| 32571 | | Chain | Description |
| 32572 | | E | No description available |
| 32573 | | |
| 32574 | | Chain information for 3mkq_yeast_alpha_betaprimeCOPI.cif F #27.6 |
| 32575 | | --- |
| 32576 | | Chain | Description |
| 32577 | | F | No description available |
| 32578 | | |
| 32579 | | |
| 32580 | | > close #27.5 |
| 32581 | | |
| 32582 | | > close #27.6 |
| 32583 | | |
| 32584 | | > close #27.3 |
| 32585 | | |
| 32586 | | > close #27.4 |
| 32587 | | |
| 32588 | | > hide #27.2 models |
| 32589 | | |
| 32590 | | > hide #27.1 models |
| 32591 | | |
| 32592 | | > show #27.1 models |
| 32593 | | |
| 32594 | | > show #27.2 models |
| 32595 | | |
| 32596 | | > select #27.1/A |
| 32597 | | |
| 32598 | | 6538 atoms, 6591 bonds, 911 residues, 1 model selected |
| 32599 | | |
| 32600 | | > color sel blue |
| 32601 | | |
| 32602 | | > hide #27.1 models |
| 32603 | | |
| 32604 | | > select subtract #27.1 |
| 32605 | | |
| 32606 | | Nothing selected |
| 32607 | | |
| 32608 | | > hide #27.2 models |
| 32609 | | |
| 32610 | | > show #27.2 models |
| 32611 | | |
| 32612 | | > select add #27.2 |
| 32613 | | |
| 32614 | | 1407 atoms, 1415 bonds, 194 residues, 1 model selected |
| 32615 | | |
| 32616 | | > color sel cyan |
| 32617 | | |
| 32618 | | > show #27.1 models |
| 32619 | | |
| 32620 | | > select add #27.1 |
| 32621 | | |
| 32622 | | 7945 atoms, 8006 bonds, 1105 residues, 2 models selected |
| 32623 | | |
| 32624 | | > select add #27 |
| 32625 | | |
| 32626 | | 7945 atoms, 8006 bonds, 1105 residues, 3 models selected |
| 32627 | | |
| 32628 | | > select subtract #27 |
| 32629 | | |
| 32630 | | Nothing selected |
| 32631 | | |
| 32632 | | > select add #27 |
| 32633 | | |
| 32634 | | 7945 atoms, 8006 bonds, 1105 residues, 3 models selected |
| 32635 | | |
| 32636 | | > show #3 models |
| 32637 | | |
| 32638 | | > show #7 models |
| 32639 | | |
| 32640 | | > undo |
| 32641 | | |
| 32642 | | [Repeated 9 time(s)] |
| 32643 | | |
| 32644 | | > hide #!27 models |
| 32645 | | |
| 32646 | | > show #!27 models |
| 32647 | | |
| 32648 | | > hide #!27 models |
| 32649 | | |
| 32650 | | > close #27 |
| 32651 | | |
| 32652 | | > open "/Users/becca/Desktop/Postdoc/Structure files/COPI |
| 32653 | | > structures/3mkq_yeast_alpha_betaprimeCOPI.cif" |
| 32654 | | |
| 32655 | | 3mkq_yeast_alpha_betaprimeCOPI.cif title: |
| 32656 | | Crystal structure of yeast alpha/betaprime-COP subcomplex of the COPI |
| 32657 | | vesicular coat [more info...] |
| 32658 | | |
| 32659 | | Chain information for 3mkq_yeast_alpha_betaprimeCOPI.cif #27 |
| 32660 | | --- |
| 32661 | | Chain | Description | UniProt |
| 32662 | | A C E | Coatomer beta'-subunit | A6ZU46_YEAS7 1-814 |
| 32663 | | B D F | Coatomer subunit alpha | COPA_YEAST 642-818 |
| 32664 | | |
| 32665 | | 3mkq_yeast_alpha_betaprimeCOPI.cif mmCIF Assemblies |
| 32666 | | --- |
| 32667 | | 1| author_defined_assembly |
| 32668 | | 2| software_defined_assembly |
| 32669 | | 3| software_defined_assembly |
| 32670 | | 4| software_defined_assembly |
| 32671 | | |
| 32672 | | |
| 32673 | | > split #27 chains |
| 32674 | | |
| 32675 | | Split 3mkq_yeast_alpha_betaprimeCOPI.cif (#27) into 6 models |
| 32676 | | Chain information for 3mkq_yeast_alpha_betaprimeCOPI.cif A #27.1 |
| 32677 | | --- |
| 32678 | | Chain | Description |
| 32679 | | A | No description available |
| 32680 | | |
| 32681 | | Chain information for 3mkq_yeast_alpha_betaprimeCOPI.cif B #27.2 |
| 32682 | | --- |
| 32683 | | Chain | Description |
| 32684 | | B | No description available |
| 32685 | | |
| 32686 | | Chain information for 3mkq_yeast_alpha_betaprimeCOPI.cif C #27.3 |
| 32687 | | --- |
| 32688 | | Chain | Description |
| 32689 | | C | No description available |
| 32690 | | |
| 32691 | | Chain information for 3mkq_yeast_alpha_betaprimeCOPI.cif D #27.4 |
| 32692 | | --- |
| 32693 | | Chain | Description |
| 32694 | | D | No description available |
| 32695 | | |
| 32696 | | Chain information for 3mkq_yeast_alpha_betaprimeCOPI.cif E #27.5 |
| 32697 | | --- |
| 32698 | | Chain | Description |
| 32699 | | E | No description available |
| 32700 | | |
| 32701 | | Chain information for 3mkq_yeast_alpha_betaprimeCOPI.cif F #27.6 |
| 32702 | | --- |
| 32703 | | Chain | Description |
| 32704 | | F | No description available |
| 32705 | | |
| 32706 | | |
| 32707 | | > select add #27 |
| 32708 | | |
| 32709 | | 23730 atoms, 23992 bonds, 2 pseudobonds, 3231 residues, 9 models selected |
| 32710 | | |
| 32711 | | > view matrix models #27,1,0,0,-33.471,0,1,0,18.268,0,0,1,-43.011 |
| 32712 | | |
| 32713 | | > view matrix models #27,1,0,0,-66.467,0,1,0,47.118,0,0,1,-97.087 |
| 32714 | | |
| 32715 | | > hide sel atoms |
| 32716 | | |
| 32717 | | > show sel cartoons |
| 32718 | | |
| 32719 | | > view matrix models #27,1,0,0,-110.34,0,1,0,105.95,0,0,1,6.2245 |
| 32720 | | |
| 32721 | | > view matrix models #27,1,0,0,-112.27,0,1,0,152.59,0,0,1,154.38 |
| 32722 | | |
| 32723 | | > view matrix models #27,1,0,0,-43.946,0,1,0,169.44,0,0,1,304.3 |
| 32724 | | |
| 32725 | | > view matrix models #27,1,0,0,5.3436,0,1,0,169.99,0,0,1,376.48 |
| 32726 | | |
| 32727 | | > view matrix models #27,1,0,0,199.46,0,1,0,49.048,0,0,1,271.6 |
| 32728 | | |
| 32729 | | > view matrix models #27,1,0,0,220.77,0,1,0,261.81,0,0,1,312.16 |
| 32730 | | |
| 32731 | | > view matrix models #27,1,0,0,264.54,0,1,0,181.16,0,0,1,203.66 |
| 32732 | | |
| 32733 | | > view matrix models #27,1,0,0,359.57,0,1,0,289.43,0,0,1,185.26 |
| 32734 | | |
| 32735 | | > view matrix models #27,1,0,0,351.51,0,1,0,278.44,0,0,1,154.94 |
| 32736 | | |
| 32737 | | > view matrix models #27,1,0,0,348.56,0,1,0,271.19,0,0,1,154.23 |
| 32738 | | |
| 32739 | | > view matrix models #27,1,0,0,310.53,0,1,0,384.31,0,0,1,171.03 |
| 32740 | | |
| 32741 | | > view matrix models #27,1,0,0,352.37,0,1,0,269.74,0,0,1,153.79 |
| 32742 | | |
| 32743 | | > hide #27.1 models |
| 32744 | | |
| 32745 | | > show #27.1 models |
| 32746 | | |
| 32747 | | > hide #!1 models |
| 32748 | | |
| 32749 | | > select subtract #27 |
| 32750 | | |
| 32751 | | Nothing selected |
| 32752 | | |
| 32753 | | > hide #27.2 models |
| 32754 | | |
| 32755 | | > show #27.2 models |
| 32756 | | |
| 32757 | | > hide #27.2 models |
| 32758 | | |
| 32759 | | > show #27.2 models |
| 32760 | | |
| 32761 | | > show #3 models |
| 32762 | | |
| 32763 | | > show #7 models |
| 32764 | | |
| 32765 | | > close #27.3 |
| 32766 | | |
| 32767 | | > close #27.4 |
| 32768 | | |
| 32769 | | > close #27.5 |
| 32770 | | |
| 32771 | | > close #27.6 |
| 32772 | | |
| 32773 | | > select add #27.1 |
| 32774 | | |
| 32775 | | 6538 atoms, 6591 bonds, 911 residues, 1 model selected |
| 32776 | | |
| 32777 | | > color sel blue |
| 32778 | | |
| 32779 | | > select subtract #27.1 |
| 32780 | | |
| 32781 | | Nothing selected |
| 32782 | | |
| 32783 | | > select add #27.2 |
| 32784 | | |
| 32785 | | 1407 atoms, 1415 bonds, 194 residues, 1 model selected |
| 32786 | | |
| 32787 | | > color sel cyan\ |
| 32788 | | |
| 32789 | | Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero', |
| 32790 | | 'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', |
| 32791 | | 'fromcartoons', 'fromribbons', or 'random' or a keyword |
| 32792 | | |
| 32793 | | > color sel cyan |
| 32794 | | |
| 32795 | | > select add #27.1 |
| 32796 | | |
| 32797 | | 7945 atoms, 8006 bonds, 1105 residues, 2 models selected |
| 32798 | | |
| 32799 | | > select add #27 |
| 32800 | | |
| 32801 | | 7945 atoms, 8006 bonds, 1105 residues, 3 models selected |
| 32802 | | |
| 32803 | | > select subtract #27 |
| 32804 | | |
| 32805 | | Nothing selected |
| 32806 | | |
| 32807 | | > select add #27 |
| 32808 | | |
| 32809 | | 7945 atoms, 8006 bonds, 1105 residues, 3 models selected |
| 32810 | | |
| 32811 | | > view matrix models #27,1,0,0,224.88,0,1,0,278.4,0,0,1,185.4 |
| 32812 | | |
| 32813 | | > ui mousemode right "rotate selected models" |
| 32814 | | |
| 32815 | | > view matrix models |
| 32816 | | > #27,-0.8019,-0.39029,-0.45235,357.11,0.26435,-0.91078,0.31718,431.22,-0.53579,0.13477,0.83353,205.04 |
| 32817 | | |
| 32818 | | > view matrix models |
| 32819 | | > #27,-0.3088,-0.50226,0.8077,151.67,0.82975,-0.55736,-0.029367,446.47,0.46493,0.66112,0.58886,180.55 |
| 32820 | | |
| 32821 | | > view matrix models |
| 32822 | | > #27,-0.39879,-0.41722,0.81663,141.04,0.67815,-0.73363,-0.043649,469.43,0.61732,0.53639,0.5755,196.08 |
| 32823 | | |
| 32824 | | > ui mousemode right "translate selected models" |
| 32825 | | |
| 32826 | | > view matrix models |
| 32827 | | > #27,-0.39879,-0.41722,0.81663,160.04,0.67815,-0.73363,-0.043649,420.23,0.61732,0.53639,0.5755,168.81 |
| 32828 | | |
| 32829 | | > view matrix models |
| 32830 | | > #27,-0.39879,-0.41722,0.81663,167.07,0.67815,-0.73363,-0.043649,415.41,0.61732,0.53639,0.5755,172.38 |
| 32831 | | |
| 32832 | | > ui mousemode right "rotate selected models" |
| 32833 | | |
| 32834 | | > view matrix models |
| 32835 | | > #27,0.087653,0.44658,0.89044,55.324,0.95808,-0.28254,0.047392,348.03,0.27275,0.84896,-0.45263,313.8 |
| 32836 | | |
| 32837 | | > view matrix models |
| 32838 | | > #27,-0.00017276,0.96234,0.27185,106.34,0.92638,0.10253,-0.36236,376.65,-0.37658,0.25178,-0.89151,459.02 |
| 32839 | | |
| 32840 | | > view matrix models |
| 32841 | | > #27,-0.56985,0.14592,0.80869,109.58,0.79912,-0.13098,0.58673,242.14,0.19153,0.98059,-0.04197,229.92 |
| 32842 | | |
| 32843 | | > ui mousemode right "translate selected models" |
| 32844 | | |
| 32845 | | > view matrix models |
| 32846 | | > #27,-0.56985,0.14592,0.80869,109.79,0.79912,-0.13098,0.58673,242.97,0.19153,0.98059,-0.04197,231.59 |
| 32847 | | |
| 32848 | | > view matrix models |
| 32849 | | > #27,-0.56985,0.14592,0.80869,90.528,0.79912,-0.13098,0.58673,243.4,0.19153,0.98059,-0.04197,255.5 |
| 32850 | | |
| 32851 | | > ui mousemode right "rotate selected models" |
| 32852 | | |
| 32853 | | > view matrix models |
| 32854 | | > #27,-0.39522,0.80772,-0.43749,229.61,0.20082,-0.38877,-0.89918,529.2,-0.89637,-0.44323,-0.0085523,416.21 |
| 32855 | | |
| 32856 | | > view matrix models |
| 32857 | | > #27,0.32357,0.9258,0.19545,103.01,0.85876,-0.2006,-0.47148,430.34,-0.39729,0.3204,-0.85995,473.27 |
| 32858 | | |
| 32859 | | > select subtract #27 |
| 32860 | | |
| 32861 | | Nothing selected |
| 32862 | | |
| 32863 | | > select add #27.1 |
| 32864 | | |
| 32865 | | 6538 atoms, 6591 bonds, 911 residues, 1 model selected |
| 32866 | | |
| 32867 | | > color sel cyan |
| 32868 | | |
| 32869 | | > select subtract #27.1 |
| 32870 | | |
| 32871 | | Nothing selected |
| 32872 | | |
| 32873 | | > select add #27.2 |
| 32874 | | |
| 32875 | | 1407 atoms, 1415 bonds, 194 residues, 1 model selected |
| 32876 | | |
| 32877 | | > color sel blue |
| 32878 | | |
| 32879 | | > select add #27 |
| 32880 | | |
| 32881 | | 7945 atoms, 8006 bonds, 1105 residues, 3 models selected |
| 32882 | | |
| 32883 | | > select subtract #27 |
| 32884 | | |
| 32885 | | Nothing selected |
| 32886 | | |
| 32887 | | > select add #27 |
| 32888 | | |
| 32889 | | 7945 atoms, 8006 bonds, 1105 residues, 3 models selected |
| 32890 | | |
| 32891 | | > view matrix models |
| 32892 | | > #27,0.67294,-0.17512,-0.71866,377.06,-0.41892,0.71051,-0.5654,354.34,0.60964,0.68154,0.40477,212.27 |
| 32893 | | |
| 32894 | | > ui mousemode right "translate selected models" |
| 32895 | | |
| 32896 | | > view matrix models |
| 32897 | | > #27,0.67294,-0.17512,-0.71866,420.58,-0.41892,0.71051,-0.5654,312.06,0.60964,0.68154,0.40477,205.11 |
| 32898 | | |
| 32899 | | > view matrix models |
| 32900 | | > #27,0.67294,-0.17512,-0.71866,426.42,-0.41892,0.71051,-0.5654,314.25,0.60964,0.68154,0.40477,204.16 |
| 32901 | | |
| 32902 | | > ui mousemode right "rotate selected models" |
| 32903 | | |
| 32904 | | > view matrix models |
| 32905 | | > #27,0.27365,-0.79674,-0.53882,467.55,-0.36388,0.43281,-0.82478,388.29,0.89034,0.42177,-0.17148,328.22 |
| 32906 | | |
| 32907 | | > view matrix models |
| 32908 | | > #27,0.0094825,-0.88128,-0.47249,467.78,-0.48973,0.40787,-0.77059,382.87,0.87182,0.2387,-0.42772,392.01 |
| 32909 | | |
| 32910 | | > view matrix models |
| 32911 | | > #27,0.04732,-0.84816,-0.52763,473.19,-0.51437,0.43211,-0.74075,375.35,0.85626,0.30645,-0.41582,382.68 |
| 32912 | | |
| 32913 | | > ui mousemode right zoom |
| 32914 | | |
| 32915 | | > select subtract #27 |
| 32916 | | |
| 32917 | | Nothing selected |
| 32918 | | |
| 32919 | | > select add #27 |
| 32920 | | |
| 32921 | | 7945 atoms, 8006 bonds, 1105 residues, 3 models selected |
| 32922 | | |
| 32923 | | > select subtract #27 |
| 32924 | | |
| 32925 | | Nothing selected |
| 32926 | | |
| 32927 | | > select add #27 |
| 32928 | | |
| 32929 | | 7945 atoms, 8006 bonds, 1105 residues, 3 models selected |
| 32930 | | |
| 32931 | | > select subtract #27 |
| 32932 | | |
| 32933 | | Nothing selected |
| 32934 | | |
| 32935 | | > ui mousemode right "rotate selected models" |
| 32936 | | |
| 32937 | | > select add #27 |
| 32938 | | |
| 32939 | | 7945 atoms, 8006 bonds, 1105 residues, 3 models selected |
| 32940 | | |
| 32941 | | > view matrix models |
| 32942 | | > #27,0.46289,-0.51191,-0.72366,466.08,-0.47119,0.5494,-0.69003,353.49,0.75081,0.66039,0.013104,271.83 |
| 32943 | | |
| 32944 | | > view matrix models |
| 32945 | | > #27,0.53247,-0.48857,-0.69121,457.42,-0.40665,0.56853,-0.71513,355.11,0.74236,0.66187,0.10405,256.29 |
| 32946 | | |
| 32947 | | > ui mousemode right "translate selected models" |
| 32948 | | |
| 32949 | | > view matrix models |
| 32950 | | > #27,0.53247,-0.48857,-0.69121,452.1,-0.40665,0.56853,-0.71513,360.23,0.74236,0.66187,0.10405,262.33 |
| 32951 | | |
| 32952 | | > view matrix models |
| 32953 | | > #27,0.53247,-0.48857,-0.69121,451.55,-0.40665,0.56853,-0.71513,361.48,0.74236,0.66187,0.10405,258.38 |
| 32954 | | |
| 32955 | | > select subtract #27 |
| 32956 | | |
| 32957 | | Nothing selected |
| 32958 | | |
| 32959 | | > select add #27 |
| 32960 | | |
| 32961 | | 7945 atoms, 8006 bonds, 1105 residues, 3 models selected |
| 32962 | | |
| 32963 | | > show #!1 models |
| 32964 | | |
| 32965 | | > hide #7 models |
| 32966 | | |
| 32967 | | > show #7 models |
| 32968 | | |
| 32969 | | > hide #7 models |
| 32970 | | |
| 32971 | | > show #7 models |
| 32972 | | |
| 32973 | | > hide #7 models |
| 32974 | | |
| 32975 | | > show #7 models |
| 32976 | | |
| 32977 | | > hide #7 models |
| 32978 | | |
| 32979 | | > show #7 models |
| 32980 | | |
| 32981 | | > hide #27.1 models |
| 32982 | | |
| 32983 | | > show #27.1 models |
| 32984 | | |
| 32985 | | > hide #27.1 models |
| 32986 | | |
| 32987 | | > show #27.1 models |
| 32988 | | |
| 32989 | | > hide #27.1 models |
| 32990 | | |
| 32991 | | > show #27.1 models |
| 32992 | | |
| 32993 | | > view matrix models |
| 32994 | | > #27,0.53247,-0.48857,-0.69121,450.51,-0.40665,0.56853,-0.71513,359.29,0.74236,0.66187,0.10405,264.47 |
| 32995 | | |
| 32996 | | > ui mousemode right "rotate selected models" |
| 32997 | | |
| 32998 | | > view matrix models |
| 32999 | | > #27,0.29764,-0.72075,-0.62605,466.91,-0.60733,0.36301,-0.70666,382.11,0.73659,0.59055,-0.32968,346.04 |
| 33000 | | |
| 33001 | | > select subtract #27.2 |
| 33002 | | |
| 33003 | | 6538 atoms, 6591 bonds, 911 residues, 2 models selected |
| 33004 | | |
| 33005 | | > select add #27.2 |
| 33006 | | |
| 33007 | | 7945 atoms, 8006 bonds, 1105 residues, 3 models selected |
| 33008 | | |
| 33009 | | > select subtract #27.2 |
| 33010 | | |
| 33011 | | 6538 atoms, 6591 bonds, 911 residues, 2 models selected |
| 33012 | | |
| 33013 | | > select add #27.2 |
| 33014 | | |
| 33015 | | 7945 atoms, 8006 bonds, 1105 residues, 3 models selected |
| 33016 | | |
| 33017 | | > fitmap #27.1 inMap #1 |
| 33018 | | |
| 33019 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 33020 | | postprocess_20231221.mrc (#1) using 6538 atoms |
| 33021 | | average map value = 0.003372, steps = 64 |
| 33022 | | shifted from previous position = 3.67 |
| 33023 | | rotated from previous position = 5.26 degrees |
| 33024 | | atoms outside contour = 3801, contour level = 0.0036964 |
| 33025 | | |
| 33026 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to |
| 33027 | | postprocess_20231221.mrc (#1) coordinates: |
| 33028 | | Matrix rotation and translation |
| 33029 | | 0.99563534 -0.01884854 0.09140567 -126.42192730 |
| 33030 | | 0.01701031 0.99963793 0.02084829 -116.29768557 |
| 33031 | | -0.09176553 -0.01920246 0.99559548 -103.45651657 |
| 33032 | | Axis -0.20980309 0.95952970 0.18784414 |
| 33033 | | Axis point -989.11740259 0.00000000 1575.71651882 |
| 33034 | | Rotation angle (degrees) 5.47712995 |
| 33035 | | Shift along axis -104.50107148 |
| 33036 | | |
| 33037 | | |
| 33038 | | > fitmap #27.1 inMap #1 |
| 33039 | | |
| 33040 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 33041 | | postprocess_20231221.mrc (#1) using 6538 atoms |
| 33042 | | average map value = 0.003372, steps = 24 |
| 33043 | | shifted from previous position = 0.00833 |
| 33044 | | rotated from previous position = 0.0572 degrees |
| 33045 | | atoms outside contour = 3796, contour level = 0.0036964 |
| 33046 | | |
| 33047 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to |
| 33048 | | postprocess_20231221.mrc (#1) coordinates: |
| 33049 | | Matrix rotation and translation |
| 33050 | | 0.99554749 -0.01869817 0.09238819 -126.60260018 |
| 33051 | | 0.01684025 0.99964080 0.02084884 -116.29480603 |
| 33052 | | -0.09274484 -0.01920017 0.99550477 -103.42435891 |
| 33053 | | Axis -0.20780890 0.96063031 0.18440409 |
| 33054 | | Axis point -982.92709826 0.00000000 1557.96731563 |
| 33055 | | Rotation angle (degrees) 5.52961189 |
| 33056 | | Shift along axis -104.47904405 |
| 33057 | | |
| 33058 | | |
| 33059 | | > fitmap #27.2 inMap #1 |
| 33060 | | |
| 33061 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) to map |
| 33062 | | postprocess_20231221.mrc (#1) using 1407 atoms |
| 33063 | | average map value = 0.002636, steps = 76 |
| 33064 | | shifted from previous position = 8.09 |
| 33065 | | rotated from previous position = 17.7 degrees |
| 33066 | | atoms outside contour = 1160, contour level = 0.0036964 |
| 33067 | | |
| 33068 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) relative to |
| 33069 | | postprocess_20231221.mrc (#1) coordinates: |
| 33070 | | Matrix rotation and translation |
| 33071 | | 0.99552776 0.00840910 -0.09409449 -103.09535974 |
| 33072 | | 0.01959858 0.95597622 0.29278894 -159.42111449 |
| 33073 | | 0.09241419 -0.29332364 0.95153605 -62.53786473 |
| 33074 | | Axis -0.95275953 -0.30318054 0.01818914 |
| 33075 | | Axis point 0.00000000 -280.34050268 351.75735188 |
| 33076 | | Rotation angle (degrees) 17.91386203 |
| 33077 | | Shift along axis 145.42095540 |
| 33078 | | |
| 33079 | | |
| 33080 | | > hide #7 models |
| 33081 | | |
| 33082 | | > select subtract #27.1 |
| 33083 | | |
| 33084 | | 1407 atoms, 1415 bonds, 194 residues, 2 models selected |
| 33085 | | |
| 33086 | | > hide #27.1 models |
| 33087 | | |
| 33088 | | > hide #3 models |
| 33089 | | |
| 33090 | | > show #3 models |
| 33091 | | |
| 33092 | | > hide #3 models |
| 33093 | | |
| 33094 | | > show #3 models |
| 33095 | | |
| 33096 | | > hide #3 models |
| 33097 | | |
| 33098 | | > select subtract #27.2 |
| 33099 | | |
| 33100 | | 1 model selected |
| 33101 | | |
| 33102 | | > hide #27.2 models |
| 33103 | | |
| 33104 | | > hide #!27 models |
| 33105 | | |
| 33106 | | > select add #27 |
| 33107 | | |
| 33108 | | 7945 atoms, 8006 bonds, 1105 residues, 3 models selected |
| 33109 | | |
| 33110 | | > select subtract #27 |
| 33111 | | |
| 33112 | | Nothing selected |
| 33113 | | |
| 33114 | | > show #28 models |
| 33115 | | |
| 33116 | | > select add #28 |
| 33117 | | |
| 33118 | | 4908 atoms, 4974 bonds, 645 residues, 1 model selected |
| 33119 | | |
| 33120 | | > split #28 chains |
| 33121 | | |
| 33122 | | Split 3mkr_yeast_alpha_epsilonCOPI.cif (#28) into 2 models |
| 33123 | | Chain information for 3mkr_yeast_alpha_epsilonCOPI.cif A #28.1 |
| 33124 | | --- |
| 33125 | | Chain | Description |
| 33126 | | A | No description available |
| 33127 | | |
| 33128 | | Chain information for 3mkr_yeast_alpha_epsilonCOPI.cif B #28.2 |
| 33129 | | --- |
| 33130 | | Chain | Description |
| 33131 | | B | No description available |
| 33132 | | |
| 33133 | | |
| 33134 | | > select add #28.1 |
| 33135 | | |
| 33136 | | 2342 atoms, 2367 bonds, 309 residues, 1 model selected |
| 33137 | | |
| 33138 | | > select subtract #28.1 |
| 33139 | | |
| 33140 | | Nothing selected |
| 33141 | | |
| 33142 | | > select add #28.2 |
| 33143 | | |
| 33144 | | 2566 atoms, 2607 bonds, 336 residues, 1 model selected |
| 33145 | | |
| 33146 | | > select subtract #28.2 |
| 33147 | | |
| 33148 | | Nothing selected |
| 33149 | | |
| 33150 | | > hide #!1 models |
| 33151 | | |
| 33152 | | > show #3 models |
| 33153 | | |
| 33154 | | > select add #28.2 |
| 33155 | | |
| 33156 | | 2566 atoms, 2607 bonds, 336 residues, 1 model selected |
| 33157 | | |
| 33158 | | > select subtract #28.2 |
| 33159 | | |
| 33160 | | Nothing selected |
| 33161 | | |
| 33162 | | > select add #28.2 |
| 33163 | | |
| 33164 | | 2566 atoms, 2607 bonds, 336 residues, 1 model selected |
| 33165 | | |
| 33166 | | > color sel blue |
| 33167 | | |
| 33168 | | > select subtract #28.2 |
| 33169 | | |
| 33170 | | Nothing selected |
| 33171 | | |
| 33172 | | > select add #28.1 |
| 33173 | | |
| 33174 | | 2342 atoms, 2367 bonds, 309 residues, 1 model selected |
| 33175 | | |
| 33176 | | > color sel orange |
| 33177 | | |
| 33178 | | > select subtract #28.1 |
| 33179 | | |
| 33180 | | Nothing selected |
| 33181 | | |
| 33182 | | > select add #28 |
| 33183 | | |
| 33184 | | 4908 atoms, 4974 bonds, 645 residues, 3 models selected |
| 33185 | | |
| 33186 | | > view matrix models |
| 33187 | | > #28,0.27094,-0.90598,-0.32525,650.32,-0.93818,-0.32415,0.12139,703.67,-0.21541,0.27225,-0.93781,646.09 |
| 33188 | | |
| 33189 | | > view matrix models |
| 33190 | | > #28,-0.72497,0.43806,-0.53153,610.37,-0.03694,0.74585,0.66509,-131.96,0.68779,0.5018,-0.52454,131.15 |
| 33191 | | |
| 33192 | | > ui mousemode right "translate selected models" |
| 33193 | | |
| 33194 | | > view matrix models |
| 33195 | | > #28,-0.72497,0.43806,-0.53153,578.74,-0.03694,0.74585,0.66509,-102.29,0.68779,0.5018,-0.52454,169.61 |
| 33196 | | |
| 33197 | | > view matrix models |
| 33198 | | > #28,-0.72497,0.43806,-0.53153,572.54,-0.03694,0.74585,0.66509,-78.73,0.68779,0.5018,-0.52454,174.16 |
| 33199 | | |
| 33200 | | > ui mousemode right "rotate selected models" |
| 33201 | | |
| 33202 | | > view matrix models |
| 33203 | | > #28,-0.61624,-0.35726,-0.70186,854.63,-0.52069,0.85344,0.022757,266.96,0.59087,0.37948,-0.71195,310.55 |
| 33204 | | |
| 33205 | | > view matrix models |
| 33206 | | > #28,-0.10838,-0.97616,-0.18805,713.55,-0.8857,0.18071,-0.42764,761.8,0.45142,0.12021,-0.88418,500.47 |
| 33207 | | |
| 33208 | | > view matrix models |
| 33209 | | > #28,0.1959,-0.68831,-0.69846,693.59,-0.74299,0.36067,-0.56381,702.29,0.63999,0.6294,-0.44075,119.75 |
| 33210 | | |
| 33211 | | > show #!1 models |
| 33212 | | |
| 33213 | | > view matrix models |
| 33214 | | > #28,0.92946,0.13561,-0.3431,60.309,-0.11667,-0.77422,-0.62207,886.84,-0.34999,0.61822,-0.70378,538.85 |
| 33215 | | |
| 33216 | | > ui mousemode right "translate selected models" |
| 33217 | | |
| 33218 | | > view matrix models |
| 33219 | | > #28,0.92946,0.13561,-0.3431,41.654,-0.11667,-0.77422,-0.62207,861.16,-0.34999,0.61822,-0.70378,548.17 |
| 33220 | | |
| 33221 | | > view matrix models |
| 33222 | | > #28,0.92946,0.13561,-0.3431,43.224,-0.11667,-0.77422,-0.62207,848.66,-0.34999,0.61822,-0.70378,541.05 |
| 33223 | | |
| 33224 | | > ui mousemode right "rotate selected models" |
| 33225 | | |
| 33226 | | > view matrix models |
| 33227 | | > #28,0.21767,0.93544,-0.27852,-4.1958,0.67225,-0.35057,-0.65206,458.24,-0.7076,-0.045302,-0.70516,877.28 |
| 33228 | | |
| 33229 | | > view matrix models |
| 33230 | | > #28,-0.20838,0.7607,-0.61474,309.65,0.79983,-0.22921,-0.55474,342.94,-0.5629,-0.60729,-0.56067,964.53 |
| 33231 | | |
| 33232 | | > hide #3 models |
| 33233 | | |
| 33234 | | > show #3 models |
| 33235 | | |
| 33236 | | > view matrix models |
| 33237 | | > #28,-0.37026,0.81787,-0.44045,284.72,0.91574,0.40097,-0.025257,-83.166,0.15595,-0.41269,-0.89742,778.5 |
| 33238 | | |
| 33239 | | > hide #!28 models |
| 33240 | | |
| 33241 | | > hide #3 models |
| 33242 | | |
| 33243 | | > show #!28 models |
| 33244 | | |
| 33245 | | > view matrix models |
| 33246 | | > #28,0.54646,0.46329,-0.69767,183.82,0.3112,-0.88573,-0.34443,645.8,-0.77752,-0.028895,-0.62819,870.21 |
| 33247 | | |
| 33248 | | > hide #!28 models |
| 33249 | | |
| 33250 | | > show #3 models |
| 33251 | | |
| 33252 | | > hide #3 models |
| 33253 | | |
| 33254 | | > show #!28 models |
| 33255 | | |
| 33256 | | > show #3 models |
| 33257 | | |
| 33258 | | > view matrix models |
| 33259 | | > #28,0.57422,0.45144,-0.68299,173.42,0.22738,-0.88935,-0.39667,692.76,-0.78649,0.072481,-0.61334,835.01 |
| 33260 | | |
| 33261 | | > ui mousemode right "translate selected models" |
| 33262 | | |
| 33263 | | > view matrix models |
| 33264 | | > #28,0.57422,0.45144,-0.68299,173.55,0.22738,-0.88935,-0.39667,708.24,-0.78649,0.072481,-0.61334,843.23 |
| 33265 | | |
| 33266 | | > view matrix models |
| 33267 | | > #28,0.57422,0.45144,-0.68299,175.76,0.22738,-0.88935,-0.39667,708.31,-0.78649,0.072481,-0.61334,839.12 |
| 33268 | | |
| 33269 | | > ui mousemode right "rotate selected models" |
| 33270 | | |
| 33271 | | > view matrix models |
| 33272 | | > #28,0.56852,0.45387,-0.68614,177.95,0.22624,-0.88814,-0.40003,709.44,-0.79095,0.072191,-0.60761,838.73 |
| 33273 | | |
| 33274 | | > view matrix models |
| 33275 | | > #28,0.56184,0.42352,-0.71061,198.48,0.20667,-0.90363,-0.37516,712.5,-0.80101,0.063921,-0.59523,840.54 |
| 33276 | | |
| 33277 | | > ui mousemode right "translate selected models" |
| 33278 | | |
| 33279 | | > view matrix models |
| 33280 | | > #28,0.56184,0.42352,-0.71061,195.64,0.20667,-0.90363,-0.37516,706.04,-0.80101,0.063921,-0.59523,844.64 |
| 33281 | | |
| 33282 | | > ui mousemode right "rotate selected models" |
| 33283 | | |
| 33284 | | > view matrix models |
| 33285 | | > #28,0.56647,0.33017,-0.75505,239.72,-0.052948,-0.89975,-0.43318,810.82,-0.82238,0.28536,-0.4922,744.22 |
| 33286 | | |
| 33287 | | > ui mousemode right "translate selected models" |
| 33288 | | |
| 33289 | | > view matrix models |
| 33290 | | > #28,0.56647,0.33017,-0.75505,238.7,-0.052948,-0.89975,-0.43318,806.34,-0.82238,0.28536,-0.4922,747.27 |
| 33291 | | |
| 33292 | | > ui mousemode right "rotate selected models" |
| 33293 | | |
| 33294 | | > view matrix models |
| 33295 | | > #28,0.56476,0.24152,-0.78912,279.86,-0.40724,-0.75012,-0.52104,904.9,-0.71778,0.61562,-0.32528,547.7 |
| 33296 | | |
| 33297 | | > ui mousemode right "translate selected models" |
| 33298 | | |
| 33299 | | > view matrix models |
| 33300 | | > #28,0.56476,0.24152,-0.78912,279.03,-0.40724,-0.75012,-0.52104,904.01,-0.71778,0.61562,-0.32528,548.96 |
| 33301 | | |
| 33302 | | > ui mousemode right "rotate selected models" |
| 33303 | | |
| 33304 | | > view matrix models |
| 33305 | | > #28,0.46944,0.26357,-0.84271,321.72,-0.35954,-0.81464,-0.45508,886.75,-0.80645,0.51661,-0.28766,597.77 |
| 33306 | | |
| 33307 | | > ui mousemode right "translate selected models" |
| 33308 | | |
| 33309 | | > view matrix models |
| 33310 | | > #28,0.46944,0.26357,-0.84271,323.88,-0.35954,-0.81464,-0.45508,888.31,-0.80645,0.51661,-0.28766,598.15 |
| 33311 | | |
| 33312 | | > view matrix models |
| 33313 | | > #28,0.46944,0.26357,-0.84271,322.26,-0.35954,-0.81464,-0.45508,888.45,-0.80645,0.51661,-0.28766,598.93 |
| 33314 | | |
| 33315 | | > ui mousemode right "rotate selected models" |
| 33316 | | |
| 33317 | | > view matrix models |
| 33318 | | > #28,0.58942,0.23895,-0.77168,266.27,-0.34892,-0.78624,-0.50997,894.47,-0.72859,0.56984,-0.38005,587.44 |
| 33319 | | |
| 33320 | | > ui mousemode right "translate selected models" |
| 33321 | | |
| 33322 | | > view matrix models |
| 33323 | | > #28,0.58942,0.23895,-0.77168,266.89,-0.34892,-0.78624,-0.50997,895.27,-0.72859,0.56984,-0.38005,586.64 |
| 33324 | | |
| 33325 | | > hide #3 models |
| 33326 | | |
| 33327 | | > show #3 models |
| 33328 | | |
| 33329 | | > hide #3 models |
| 33330 | | |
| 33331 | | > show #3 models |
| 33332 | | |
| 33333 | | > hide #3 models |
| 33334 | | |
| 33335 | | > hide #!1 models |
| 33336 | | |
| 33337 | | > show #!1 models |
| 33338 | | |
| 33339 | | > select subtract #28 |
| 33340 | | |
| 33341 | | Nothing selected |
| 33342 | | |
| 33343 | | > ui mousemode right zoom |
| 33344 | | |
| 33345 | | > hide #!28 models |
| 33346 | | |
| 33347 | | > show #29 models |
| 33348 | | |
| 33349 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 33350 | | > dataset/Chimera sessions/20240212_leaf_fitting_v8.cxs" |
| 33351 | | |
| 33352 | | > select add #29 |
| 33353 | | |
| 33354 | | 2270 atoms, 2156 bonds, 426 residues, 1 model selected |
| 33355 | | |
| 33356 | | > color sel lime green |
| 33357 | | |
| 33358 | | > select subtract #29 |
| 33359 | | |
| 33360 | | Nothing selected |
| 33361 | | |
| 33362 | | > hide #29 models |
| 33363 | | |
| 33364 | | > show #29 models |
| 33365 | | |
| 33366 | | > select add #29 |
| 33367 | | |
| 33368 | | 2270 atoms, 2156 bonds, 426 residues, 1 model selected |
| 33369 | | |
| 33370 | | > show #!9 models |
| 33371 | | |
| 33372 | | > hide #!1 models |
| 33373 | | |
| 33374 | | > ui mousemode right "translate selected models" |
| 33375 | | |
| 33376 | | > view matrix models #29,1,0,0,375.34,0,1,0,388.97,0,0,1,396.79 |
| 33377 | | |
| 33378 | | > view matrix models #29,1,0,0,428.18,0,1,0,380.13,0,0,1,342.71 |
| 33379 | | |
| 33380 | | > ui mousemode right "rotate selected models" |
| 33381 | | |
| 33382 | | > view matrix models |
| 33383 | | > #29,0.83833,-0.49981,0.21772,422.81,0.32688,0.14123,-0.93445,366.32,0.4363,0.85455,0.28178,350.68 |
| 33384 | | |
| 33385 | | > ui mousemode right "translate selected models" |
| 33386 | | |
| 33387 | | > view matrix models |
| 33388 | | > #29,0.83833,-0.49981,0.21772,371.69,0.32688,0.14123,-0.93445,391.6,0.4363,0.85455,0.28178,399.82 |
| 33389 | | |
| 33390 | | > ui mousemode right zoom |
| 33391 | | |
| 33392 | | > hide #29 models |
| 33393 | | |
| 33394 | | > show #29 models |
| 33395 | | |
| 33396 | | > hide #29 models |
| 33397 | | |
| 33398 | | > show #29 models |
| 33399 | | |
| 33400 | | > hide #29 models |
| 33401 | | |
| 33402 | | > show #29 models |
| 33403 | | |
| 33404 | | > ui mousemode right "rotate selected models" |
| 33405 | | |
| 33406 | | > view matrix models |
| 33407 | | > #29,0.8548,-0.37766,0.35593,374.92,0.47797,0.30579,-0.82343,397.49,0.20214,0.87399,0.4419,397.51 |
| 33408 | | |
| 33409 | | > ui mousemode right "translate selected models" |
| 33410 | | |
| 33411 | | > view matrix models |
| 33412 | | > #29,0.8548,-0.37766,0.35593,375,0.47797,0.30579,-0.82343,394.09,0.20214,0.87399,0.4419,399.97 |
| 33413 | | |
| 33414 | | > view matrix models |
| 33415 | | > #29,0.8548,-0.37766,0.35593,371.98,0.47797,0.30579,-0.82343,396.12,0.20214,0.87399,0.4419,403.61 |
| 33416 | | |
| 33417 | | > view matrix models |
| 33418 | | > #29,0.8548,-0.37766,0.35593,370.55,0.47797,0.30579,-0.82343,397.11,0.20214,0.87399,0.4419,403.75 |
| 33419 | | |
| 33420 | | > view matrix models |
| 33421 | | > #29,0.8548,-0.37766,0.35593,370.1,0.47797,0.30579,-0.82343,396.07,0.20214,0.87399,0.4419,400.61 |
| 33422 | | |
| 33423 | | > view matrix models |
| 33424 | | > #29,0.8548,-0.37766,0.35593,368.66,0.47797,0.30579,-0.82343,395.18,0.20214,0.87399,0.4419,399.13 |
| 33425 | | |
| 33426 | | > ui mousemode right "rotate selected models" |
| 33427 | | |
| 33428 | | > view matrix models |
| 33429 | | > #29,0.79685,-0.40594,0.44748,368.4,0.54533,0.16442,-0.82194,395.08,0.26008,0.89899,0.35239,399.38 |
| 33430 | | |
| 33431 | | > view matrix models |
| 33432 | | > #29,0.93787,0.087344,0.33582,374.61,0.28212,0.37149,-0.88453,391.34,-0.20201,0.92432,0.32377,390.45 |
| 33433 | | |
| 33434 | | > ui mousemode right "translate selected models" |
| 33435 | | |
| 33436 | | > view matrix models |
| 33437 | | > #29,0.93787,0.087344,0.33582,374.66,0.28212,0.37149,-0.88453,390.76,-0.20201,0.92432,0.32377,389.31 |
| 33438 | | |
| 33439 | | > view matrix models |
| 33440 | | > #29,0.93787,0.087344,0.33582,372.22,0.28212,0.37149,-0.88453,390.66,-0.20201,0.92432,0.32377,390.82 |
| 33441 | | |
| 33442 | | > ui mousemode right "rotate selected models" |
| 33443 | | |
| 33444 | | > view matrix models |
| 33445 | | > #29,0.92879,0.017925,0.37018,371.78,0.33922,0.3612,-0.8686,391.85,-0.14928,0.93232,0.3294,391.98 |
| 33446 | | |
| 33447 | | > ui mousemode right "translate selected models" |
| 33448 | | |
| 33449 | | > view matrix models |
| 33450 | | > #29,0.92879,0.017925,0.37018,372.65,0.33922,0.3612,-0.8686,391.75,-0.14928,0.93232,0.3294,391.71 |
| 33451 | | |
| 33452 | | > view matrix models |
| 33453 | | > #29,0.92879,0.017925,0.37018,373.04,0.33922,0.3612,-0.8686,392.19,-0.14928,0.93232,0.3294,390.82 |
| 33454 | | |
| 33455 | | > view matrix models |
| 33456 | | > #29,0.92879,0.017925,0.37018,372.95,0.33922,0.3612,-0.8686,392.11,-0.14928,0.93232,0.3294,390.88 |
| 33457 | | |
| 33458 | | > ui mousemode right "rotate selected models" |
| 33459 | | |
| 33460 | | > view matrix models |
| 33461 | | > #29,0.93952,-0.036326,0.34055,372.25,0.32812,0.3804,-0.86466,392.14,-0.098138,0.92411,0.36932,392.27 |
| 33462 | | |
| 33463 | | > ui mousemode right "translate selected models" |
| 33464 | | |
| 33465 | | > view matrix models |
| 33466 | | > #29,0.93952,-0.036326,0.34055,372.49,0.32812,0.3804,-0.86466,391.54,-0.098138,0.92411,0.36932,392.82 |
| 33467 | | |
| 33468 | | > ui mousemode right "rotate selected models" |
| 33469 | | |
| 33470 | | > view matrix models |
| 33471 | | > #29,0.93561,-0.042104,0.35051,372.48,0.33743,0.39859,-0.8528,392.04,-0.1038,0.91616,0.38713,392.85 |
| 33472 | | |
| 33473 | | > view matrix models |
| 33474 | | > #29,0.93508,-0.066989,0.34804,372.19,0.34797,0.36016,-0.86557,391.71,-0.067366,0.93048,0.36009,393.36 |
| 33475 | | |
| 33476 | | > select subtract #29 |
| 33477 | | |
| 33478 | | Nothing selected |
| 33479 | | |
| 33480 | | > hide #29 models |
| 33481 | | |
| 33482 | | > show #!1 models |
| 33483 | | |
| 33484 | | > show #29 models |
| 33485 | | |
| 33486 | | > hide #29 models |
| 33487 | | |
| 33488 | | > show #29 models |
| 33489 | | |
| 33490 | | > select add #29 |
| 33491 | | |
| 33492 | | 2270 atoms, 2156 bonds, 426 residues, 1 model selected |
| 33493 | | |
| 33494 | | > view matrix models |
| 33495 | | > #29,0.9287,-0.093321,0.3589,371.94,0.3671,0.36847,-0.85409,392.3,-0.052542,0.92494,0.37646,393.79 |
| 33496 | | |
| 33497 | | > view matrix models |
| 33498 | | > #29,0.93478,0.008194,0.35514,373.02,0.33418,0.31874,-0.88698,390.77,-0.12047,0.94781,0.29522,391.71 |
| 33499 | | |
| 33500 | | > select subtract #29 |
| 33501 | | |
| 33502 | | Nothing selected |
| 33503 | | |
| 33504 | | > hide #29 models |
| 33505 | | |
| 33506 | | > show #!30 models |
| 33507 | | |
| 33508 | | > select add #30 |
| 33509 | | |
| 33510 | | 2737 atoms, 2622 bonds, 1 pseudobond, 505 residues, 2 models selected |
| 33511 | | |
| 33512 | | > color sel blue |
| 33513 | | |
| 33514 | | > hide #!9 models |
| 33515 | | |
| 33516 | | > show #3 models |
| 33517 | | |
| 33518 | | > hide #!1 models |
| 33519 | | |
| 33520 | | > view matrix models |
| 33521 | | > #30,0.79132,0.085843,0.60535,342.1,-0.0093616,0.99168,-0.12839,302.91,-0.61133,0.09593,0.78554,365.41 |
| 33522 | | |
| 33523 | | > view matrix models |
| 33524 | | > #30,-0.24899,0.12054,-0.96098,295.64,0.86303,0.4779,-0.16366,319.44,0.43952,-0.8701,-0.22302,369.25 |
| 33525 | | |
| 33526 | | > view matrix models |
| 33527 | | > #30,-0.27578,0.087921,-0.95719,295.96,0.90872,0.34843,-0.22981,320.5,0.31331,-0.9332,-0.17599,369.99 |
| 33528 | | |
| 33529 | | > ui mousemode right "translate selected models" |
| 33530 | | |
| 33531 | | > view matrix models |
| 33532 | | > #30,-0.27578,0.087921,-0.95719,263.02,0.90872,0.34843,-0.22981,367.61,0.31331,-0.9332,-0.17599,317.21 |
| 33533 | | |
| 33534 | | > view matrix models |
| 33535 | | > #30,-0.27578,0.087921,-0.95719,256.75,0.90872,0.34843,-0.22981,369.1,0.31331,-0.9332,-0.17599,313.93 |
| 33536 | | |
| 33537 | | > ui mousemode right "rotate selected models" |
| 33538 | | |
| 33539 | | > view matrix models |
| 33540 | | > #30,0.75135,-0.36095,0.55244,308.4,-0.54131,0.14169,0.8288,380.85,-0.37743,-0.92176,-0.088924,308.45 |
| 33541 | | |
| 33542 | | > ui mousemode right "translate selected models" |
| 33543 | | |
| 33544 | | > view matrix models |
| 33545 | | > #30,0.75135,-0.36095,0.55244,300.71,-0.54131,0.14169,0.8288,377.79,-0.37743,-0.92176,-0.088924,307.47 |
| 33546 | | |
| 33547 | | > ui mousemode right "translate selected models" |
| 33548 | | |
| 33549 | | > view matrix models |
| 33550 | | > #30,0.75135,-0.36095,0.55244,301.05,-0.54131,0.14169,0.8288,377.4,-0.37743,-0.92176,-0.088924,306.34 |
| 33551 | | |
| 33552 | | > ui mousemode right zoom |
| 33553 | | |
| 33554 | | > ui mousemode right "translate selected models" |
| 33555 | | |
| 33556 | | > view matrix models |
| 33557 | | > #30,0.75135,-0.36095,0.55244,306.04,-0.54131,0.14169,0.8288,377.36,-0.37743,-0.92176,-0.088924,307.64 |
| 33558 | | |
| 33559 | | > ui mousemode right "rotate selected models" |
| 33560 | | |
| 33561 | | > view matrix models |
| 33562 | | > #30,0.73746,-0.38813,0.55273,306.33,-0.52055,0.1948,0.83131,376.79,-0.43033,-0.90078,-0.05838,307.43 |
| 33563 | | |
| 33564 | | > ui mousemode right "translate selected models" |
| 33565 | | |
| 33566 | | > view matrix models |
| 33567 | | > #30,0.73746,-0.38813,0.55273,302.77,-0.52055,0.1948,0.83131,374.28,-0.43033,-0.90078,-0.05838,306.95 |
| 33568 | | |
| 33569 | | > view matrix models |
| 33570 | | > #30,0.73746,-0.38813,0.55273,303.4,-0.52055,0.1948,0.83131,375.49,-0.43033,-0.90078,-0.05838,305.83 |
| 33571 | | |
| 33572 | | > view matrix models |
| 33573 | | > #30,0.73746,-0.38813,0.55273,304.24,-0.52055,0.1948,0.83131,376.71,-0.43033,-0.90078,-0.05838,305.94 |
| 33574 | | |
| 33575 | | > ui mousemode right "rotate selected models" |
| 33576 | | |
| 33577 | | > view matrix models |
| 33578 | | > #30,0.81542,-0.39068,0.42716,302.29,-0.40454,0.14323,0.90323,380.36,-0.41406,-0.90932,-0.04125,306.63 |
| 33579 | | |
| 33580 | | > view matrix models |
| 33581 | | > #30,0.82816,-0.48879,0.27428,300.57,-0.36661,-0.10223,0.92474,385.14,-0.42396,-0.86639,-0.26386,300.86 |
| 33582 | | |
| 33583 | | > ui mousemode right zoom |
| 33584 | | |
| 33585 | | > ui mousemode right "translate selected models" |
| 33586 | | |
| 33587 | | > view matrix models |
| 33588 | | > #30,0.82816,-0.48879,0.27428,298.77,-0.36661,-0.10223,0.92474,382.56,-0.42396,-0.86639,-0.26386,300.43 |
| 33589 | | |
| 33590 | | > view matrix models |
| 33591 | | > #30,0.82816,-0.48879,0.27428,298.1,-0.36661,-0.10223,0.92474,384.39,-0.42396,-0.86639,-0.26386,299.48 |
| 33592 | | |
| 33593 | | > view matrix models |
| 33594 | | > #30,0.82816,-0.48879,0.27428,298.04,-0.36661,-0.10223,0.92474,383.35,-0.42396,-0.86639,-0.26386,300.87 |
| 33595 | | |
| 33596 | | > ui mousemode right "rotate selected models" |
| 33597 | | |
| 33598 | | > view matrix models |
| 33599 | | > #30,0.78042,-0.47085,0.4114,300.32,-0.45137,0.031056,0.8918,379.61,-0.43268,-0.88167,-0.18829,302.71 |
| 33600 | | |
| 33601 | | > view matrix models |
| 33602 | | > #30,0.8048,-0.42303,0.41633,299.92,-0.45528,0.010045,0.89029,379.87,-0.3808,-0.90606,-0.18451,303.73 |
| 33603 | | |
| 33604 | | > ui mousemode right "translate selected models" |
| 33605 | | |
| 33606 | | > view matrix models |
| 33607 | | > #30,0.8048,-0.42303,0.41633,300.4,-0.45528,0.010045,0.89029,380.98,-0.3808,-0.90606,-0.18451,304.23 |
| 33608 | | |
| 33609 | | > view matrix models |
| 33610 | | > #30,0.8048,-0.42303,0.41633,300.6,-0.45528,0.010045,0.89029,380.37,-0.3808,-0.90606,-0.18451,303.94 |
| 33611 | | |
| 33612 | | > ui mousemode right "rotate selected models" |
| 33613 | | |
| 33614 | | > view matrix models |
| 33615 | | > #30,0.83865,-0.45123,0.30505,298.92,-0.36787,-0.056235,0.92818,383.18,-0.40166,-0.89064,-0.21315,302.83 |
| 33616 | | |
| 33617 | | > view matrix models |
| 33618 | | > #30,0.79527,-0.52538,0.30252,299.59,-0.39715,-0.074472,0.91473,382.87,-0.45805,-0.8476,-0.26788,300.33 |
| 33619 | | |
| 33620 | | > ui mousemode right "translate selected models" |
| 33621 | | |
| 33622 | | > view matrix models |
| 33623 | | > #30,0.79527,-0.52538,0.30252,299.35,-0.39715,-0.074472,0.91473,382.32,-0.45805,-0.8476,-0.26788,299.81 |
| 33624 | | |
| 33625 | | > ui mousemode right "rotate selected models" |
| 33626 | | |
| 33627 | | > view matrix models |
| 33628 | | > #30,0.72405,-0.51886,0.45446,301.89,-0.54275,-0.021995,0.83961,378.28,-0.42564,-0.85458,-0.29753,299.59 |
| 33629 | | |
| 33630 | | > show #!1 models |
| 33631 | | |
| 33632 | | > hide #!1 models |
| 33633 | | |
| 33634 | | > hide #3 models |
| 33635 | | |
| 33636 | | > show #!1 models |
| 33637 | | |
| 33638 | | > fitmap #30 inMap #1 |
| 33639 | | |
| 33640 | | Fit molecule 4j87_yeast_alphaCOPI.cif (#30) to map postprocess_20231221.mrc |
| 33641 | | (#1) using 2737 atoms |
| 33642 | | average map value = 0.003386, steps = 52 |
| 33643 | | shifted from previous position = 1.93 |
| 33644 | | rotated from previous position = 9.04 degrees |
| 33645 | | atoms outside contour = 1731, contour level = 0.0036964 |
| 33646 | | |
| 33647 | | Position of 4j87_yeast_alphaCOPI.cif (#30) relative to |
| 33648 | | postprocess_20231221.mrc (#1) coordinates: |
| 33649 | | Matrix rotation and translation |
| 33650 | | 0.80232827 -0.50188592 0.32307875 187.68257184 |
| 33651 | | -0.41022520 -0.07048171 0.90925663 269.80500093 |
| 33652 | | -0.43357196 -0.86205734 -0.26243572 189.57183217 |
| 33653 | | Axis -0.91857179 0.39238555 0.04753362 |
| 33654 | | Axis point 0.00000000 254.75327857 -21.62954113 |
| 33655 | | Rotation angle (degrees) 105.38445736 |
| 33656 | | Shift along axis -57.52129884 |
| 33657 | | |
| 33658 | | |
| 33659 | | > hide #!1 models |
| 33660 | | |
| 33661 | | > show #3 models |
| 33662 | | |
| 33663 | | > hide #3 models |
| 33664 | | |
| 33665 | | > show #3 models |
| 33666 | | |
| 33667 | | > hide #3 models |
| 33668 | | |
| 33669 | | > show #3 models |
| 33670 | | |
| 33671 | | > fitmap #3 inMap #1 |
| 33672 | | |
| 33673 | | Fit molecule CopA_F8WHL2.pdb (#3) to map postprocess_20231221.mrc (#1) using |
| 33674 | | 9810 atoms |
| 33675 | | average map value = 0.001845, steps = 48 |
| 33676 | | shifted from previous position = 0.0635 |
| 33677 | | rotated from previous position = 0.06 degrees |
| 33678 | | atoms outside contour = 8390, contour level = 0.0036964 |
| 33679 | | |
| 33680 | | Position of CopA_F8WHL2.pdb (#3) relative to postprocess_20231221.mrc (#1) |
| 33681 | | coordinates: |
| 33682 | | Matrix rotation and translation |
| 33683 | | 0.89969968 0.40483834 0.16323723 162.22508583 |
| 33684 | | -0.20999045 0.72925801 -0.65121943 244.63047450 |
| 33685 | | -0.38268065 0.55162366 0.74112539 239.09252445 |
| 33686 | | Axis 0.82555696 0.37468421 -0.42198038 |
| 33687 | | Axis point 0.00000000 -323.15021497 438.25527850 |
| 33688 | | Rotation angle (degrees) 46.76112549 |
| 33689 | | Shift along axis 124.69286920 |
| 33690 | | |
| 33691 | | |
| 33692 | | > hide #3 models |
| 33693 | | |
| 33694 | | > hide #!30 models |
| 33695 | | |
| 33696 | | > show #!30 models |
| 33697 | | |
| 33698 | | > show #!1 models |
| 33699 | | |
| 33700 | | > fitmap #30 inMap #1 |
| 33701 | | |
| 33702 | | Fit molecule 4j87_yeast_alphaCOPI.cif (#30) to map postprocess_20231221.mrc |
| 33703 | | (#1) using 2737 atoms |
| 33704 | | average map value = 0.003385, steps = 28 |
| 33705 | | shifted from previous position = 0.0431 |
| 33706 | | rotated from previous position = 0.0812 degrees |
| 33707 | | atoms outside contour = 1725, contour level = 0.0036964 |
| 33708 | | |
| 33709 | | Position of 4j87_yeast_alphaCOPI.cif (#30) relative to |
| 33710 | | postprocess_20231221.mrc (#1) coordinates: |
| 33711 | | Matrix rotation and translation |
| 33712 | | 0.80295655 -0.50066555 0.32341119 187.67454501 |
| 33713 | | -0.41013749 -0.07039394 0.90930300 269.81751356 |
| 33714 | | -0.43249050 -0.86277384 -0.26186499 189.64270915 |
| 33715 | | Axis -0.91879892 0.39192525 0.04693763 |
| 33716 | | Axis point 0.00000000 254.75671482 -21.74749759 |
| 33717 | | Rotation angle (degrees) 105.34622736 |
| 33718 | | Shift along axis -57.78549428 |
| 33719 | | |
| 33720 | | |
| 33721 | | > fitmap #30 inMap #1 |
| 33722 | | |
| 33723 | | Fit molecule 4j87_yeast_alphaCOPI.cif (#30) to map postprocess_20231221.mrc |
| 33724 | | (#1) using 2737 atoms |
| 33725 | | average map value = 0.003386, steps = 28 |
| 33726 | | shifted from previous position = 0.0564 |
| 33727 | | rotated from previous position = 0.0807 degrees |
| 33728 | | atoms outside contour = 1733, contour level = 0.0036964 |
| 33729 | | |
| 33730 | | Position of 4j87_yeast_alphaCOPI.cif (#30) relative to |
| 33731 | | postprocess_20231221.mrc (#1) coordinates: |
| 33732 | | Matrix rotation and translation |
| 33733 | | 0.80231444 -0.50188366 0.32311660 187.68914075 |
| 33734 | | -0.41022632 -0.07040021 0.90926244 269.80159975 |
| 33735 | | -0.43359649 -0.86206531 -0.26236899 189.56128331 |
| 33736 | | Axis -0.91856133 0.39241037 0.04753095 |
| 33737 | | Axis point 0.00000000 254.75820348 -21.64414576 |
| 33738 | | Rotation angle (degrees) 105.38046415 |
| 33739 | | Shift along axis -57.52101283 |
| 33740 | | |
| 33741 | | |
| 33742 | | > hide #!1 models |
| 33743 | | |
| 33744 | | > hide #!30 models |
| 33745 | | |
| 33746 | | > show #!30 models |
| 33747 | | |
| 33748 | | > select subtract #30 |
| 33749 | | |
| 33750 | | Nothing selected |
| 33751 | | |
| 33752 | | > select add #30 |
| 33753 | | |
| 33754 | | 2737 atoms, 2622 bonds, 1 pseudobond, 505 residues, 2 models selected |
| 33755 | | |
| 33756 | | > select subtract #30 |
| 33757 | | |
| 33758 | | Nothing selected |
| 33759 | | |
| 33760 | | > hide #!30 models |
| 33761 | | |
| 33762 | | > show #31 models |
| 33763 | | |
| 33764 | | > select add #31 |
| 33765 | | |
| 33766 | | 2340 atoms, 2256 bonds, 394 residues, 1 model selected |
| 33767 | | |
| 33768 | | > split #31 chains |
| 33769 | | |
| 33770 | | Split 5mc7_human_zeta1COPI.cif (#31) into 2 models |
| 33771 | | Chain information for 5mc7_human_zeta1COPI.cif A #31.1 |
| 33772 | | --- |
| 33773 | | Chain | Description |
| 33774 | | A | No description available |
| 33775 | | |
| 33776 | | Chain information for 5mc7_human_zeta1COPI.cif B #31.2 |
| 33777 | | --- |
| 33778 | | Chain | Description |
| 33779 | | B | No description available |
| 33780 | | |
| 33781 | | |
| 33782 | | > hide #31.2 models |
| 33783 | | |
| 33784 | | > show #31.2 models |
| 33785 | | |
| 33786 | | > hide #31.2 models |
| 33787 | | |
| 33788 | | > show #31.2 models |
| 33789 | | |
| 33790 | | > close #31.2 |
| 33791 | | |
| 33792 | | > select add #31.1 |
| 33793 | | |
| 33794 | | 1187 atoms, 1128 bonds, 214 residues, 1 model selected |
| 33795 | | |
| 33796 | | > color sel yellow |
| 33797 | | |
| 33798 | | > select add #31 |
| 33799 | | |
| 33800 | | 1187 atoms, 1128 bonds, 214 residues, 2 models selected |
| 33801 | | |
| 33802 | | > select subtract #31 |
| 33803 | | |
| 33804 | | Nothing selected |
| 33805 | | |
| 33806 | | > select add #31 |
| 33807 | | |
| 33808 | | 1187 atoms, 1128 bonds, 214 residues, 2 models selected |
| 33809 | | |
| 33810 | | > show #!1 models |
| 33811 | | |
| 33812 | | > show #10 models |
| 33813 | | |
| 33814 | | > view matrix models |
| 33815 | | > #31,0.77045,-0.26029,0.58195,-46.985,0.36195,0.93005,-0.063212,-65.34,-0.52479,0.25934,0.81077,140.57 |
| 33816 | | |
| 33817 | | > view matrix models |
| 33818 | | > #31,0.72521,-0.27949,0.62925,-43.367,0.34932,0.9369,0.013553,-90.273,-0.59334,0.20998,0.77708,189.06 |
| 33819 | | |
| 33820 | | > ui mousemode right "translate selected models" |
| 33821 | | |
| 33822 | | > view matrix models |
| 33823 | | > #31,0.72521,-0.27949,0.62925,-16.885,0.34932,0.9369,0.013553,-51.066,-0.59334,0.20998,0.77708,176.45 |
| 33824 | | |
| 33825 | | > view matrix models |
| 33826 | | > #31,0.72521,-0.27949,0.62925,-6.5132,0.34932,0.9369,0.013553,-57.31,-0.59334,0.20998,0.77708,174.64 |
| 33827 | | |
| 33828 | | > hide #!1 models |
| 33829 | | |
| 33830 | | > view matrix models |
| 33831 | | > #31,0.72521,-0.27949,0.62925,-7.6962,0.34932,0.9369,0.013553,-59.076,-0.59334,0.20998,0.77708,174.86 |
| 33832 | | |
| 33833 | | > ui mousemode right "move picked models" |
| 33834 | | |
| 33835 | | > ui mousemode right "rotate selected models" |
| 33836 | | |
| 33837 | | > view matrix models |
| 33838 | | > #31,-0.095195,0.87129,-0.48146,251.77,0.83505,-0.19338,-0.51506,343.26,-0.54187,-0.45107,-0.70916,887.8 |
| 33839 | | |
| 33840 | | > ui mousemode right "translate selected models" |
| 33841 | | |
| 33842 | | > view matrix models |
| 33843 | | > #31,-0.095195,0.87129,-0.48146,244.89,0.83505,-0.19338,-0.51506,340.66,-0.54187,-0.45107,-0.70916,889.02 |
| 33844 | | |
| 33845 | | > ui mousemode right "rotate selected models" |
| 33846 | | |
| 33847 | | > view matrix models |
| 33848 | | > #31,0.0027708,0.40312,-0.91514,517.14,0.90915,0.3801,0.17018,-105.02,0.41645,-0.83248,-0.36544,603.02 |
| 33849 | | |
| 33850 | | > ui mousemode right "translate selected models" |
| 33851 | | |
| 33852 | | > view matrix models |
| 33853 | | > #31,0.0027708,0.40312,-0.91514,517.9,0.90915,0.3801,0.17018,-105.01,0.41645,-0.83248,-0.36544,601.65 |
| 33854 | | |
| 33855 | | > view matrix models |
| 33856 | | > #31,0.0027708,0.40312,-0.91514,517.09,0.90915,0.3801,0.17018,-105.49,0.41645,-0.83248,-0.36544,602.57 |
| 33857 | | |
| 33858 | | > ui mousemode right "rotate selected models" |
| 33859 | | |
| 33860 | | > view matrix models |
| 33861 | | > #31,-0.28237,0.90449,-0.31965,234.95,-0.86547,-0.096463,0.49159,477.04,0.4138,0.41545,0.81004,-208.33 |
| 33862 | | |
| 33863 | | > view matrix models |
| 33864 | | > #31,0.41595,0.56615,-0.71166,268.31,-0.82648,0.5618,-0.036124,433.89,0.37936,0.6032,0.7016,-221.35 |
| 33865 | | |
| 33866 | | > ui mousemode right "translate selected models" |
| 33867 | | |
| 33868 | | > view matrix models |
| 33869 | | > #31,0.41595,0.56615,-0.71166,277.82,-0.82648,0.5618,-0.036124,434.95,0.37936,0.6032,0.7016,-219.83 |
| 33870 | | |
| 33871 | | > ui mousemode right "rotate selected models" |
| 33872 | | |
| 33873 | | > view matrix models |
| 33874 | | > #31,0.45932,0.67175,-0.58119,185.25,-0.76826,0.62885,0.11967,341.62,0.44587,0.39154,0.80492,-207.01 |
| 33875 | | |
| 33876 | | > view matrix models |
| 33877 | | > #31,0.49942,0.66357,-0.55701,167.37,-0.76647,0.63812,0.072971,354.22,0.40386,0.39049,0.82729,-201.65 |
| 33878 | | |
| 33879 | | > select add #10 |
| 33880 | | |
| 33881 | | 2607 atoms, 2569 bonds, 391 residues, 3 models selected |
| 33882 | | |
| 33883 | | > select subtract #10 |
| 33884 | | |
| 33885 | | 1187 atoms, 1128 bonds, 214 residues, 2 models selected |
| 33886 | | |
| 33887 | | > fitmap #31.1 inMap #1 |
| 33888 | | |
| 33889 | | Fit molecule 5mc7_human_zeta1COPI.cif A (#31.1) to map |
| 33890 | | postprocess_20231221.mrc (#1) using 1187 atoms |
| 33891 | | average map value = 0.003717, steps = 72 |
| 33892 | | shifted from previous position = 1.37 |
| 33893 | | rotated from previous position = 11.3 degrees |
| 33894 | | atoms outside contour = 668, contour level = 0.0036964 |
| 33895 | | |
| 33896 | | Position of 5mc7_human_zeta1COPI.cif A (#31.1) relative to |
| 33897 | | postprocess_20231221.mrc (#1) coordinates: |
| 33898 | | Matrix rotation and translation |
| 33899 | | 0.98920702 -0.11431776 -0.09165649 177.62995202 |
| 33900 | | 0.10191685 0.98624349 -0.13014121 214.61813191 |
| 33901 | | 0.10527306 0.11939526 0.98724989 218.15252352 |
| 33902 | | Axis 0.64906227 -0.51222791 0.56244176 |
| 33903 | | Axis point 0.00000000 -982.87079504 2257.03819953 |
| 33904 | | Rotation angle (degrees) 11.08286238 |
| 33905 | | Shift along axis 128.05759337 |
| 33906 | | |
| 33907 | | |
| 33908 | | > show #!1 models |
| 33909 | | |
| 33910 | | > view matrix models |
| 33911 | | > #31,0.35297,0.7657,-0.53769,171.74,0.58437,0.26839,0.76582,-173.96,0.7307,-0.58453,-0.35272,425.29 |
| 33912 | | |
| 33913 | | > undo |
| 33914 | | |
| 33915 | | > fitmap #31.1 inMap #1 |
| 33916 | | |
| 33917 | | Fit molecule 5mc7_human_zeta1COPI.cif A (#31.1) to map |
| 33918 | | postprocess_20231221.mrc (#1) using 1187 atoms |
| 33919 | | average map value = 0.003717, steps = 60 |
| 33920 | | shifted from previous position = 0.0413 |
| 33921 | | rotated from previous position = 0.0922 degrees |
| 33922 | | atoms outside contour = 665, contour level = 0.0036964 |
| 33923 | | |
| 33924 | | Position of 5mc7_human_zeta1COPI.cif A (#31.1) relative to |
| 33925 | | postprocess_20231221.mrc (#1) coordinates: |
| 33926 | | Matrix rotation and translation |
| 33927 | | 0.98923110 -0.11511984 -0.09038398 177.64670787 |
| 33928 | | 0.10292017 0.98620208 -0.12966451 214.58254620 |
| 33929 | | 0.10406382 0.11896584 0.98742992 218.18063668 |
| 33930 | | Axis 0.64810713 -0.50686895 0.56836698 |
| 33931 | | Axis point 0.00000000 -971.46735600 2267.93030426 |
| 33932 | | Rotation angle (degrees) 11.05858996 |
| 33933 | | Shift along axis 130.37553701 |
| 33934 | | |
| 33935 | | |
| 33936 | | > fitmap #31.1 inMap #1 |
| 33937 | | |
| 33938 | | Fit molecule 5mc7_human_zeta1COPI.cif A (#31.1) to map |
| 33939 | | postprocess_20231221.mrc (#1) using 1187 atoms |
| 33940 | | average map value = 0.003716, steps = 44 |
| 33941 | | shifted from previous position = 0.0381 |
| 33942 | | rotated from previous position = 0.0919 degrees |
| 33943 | | atoms outside contour = 667, contour level = 0.0036964 |
| 33944 | | |
| 33945 | | Position of 5mc7_human_zeta1COPI.cif A (#31.1) relative to |
| 33946 | | postprocess_20231221.mrc (#1) coordinates: |
| 33947 | | Matrix rotation and translation |
| 33948 | | 0.98918508 -0.11442244 -0.09176266 177.64700501 |
| 33949 | | 0.10202250 0.98624996 -0.13000930 214.61097362 |
| 33950 | | 0.10537690 0.11924140 0.98725741 218.13649995 |
| 33951 | | Axis 0.64825051 -0.51271998 0.56292938 |
| 33952 | | Axis point 0.00000000 -984.03286467 2259.28865913 |
| 33953 | | Rotation angle (degrees) 11.08404793 |
| 33954 | | Shift along axis 127.91987227 |
| 33955 | | |
| 33956 | | |
| 33957 | | > fitmap #31.1 inMap #1 |
| 33958 | | |
| 33959 | | Fit molecule 5mc7_human_zeta1COPI.cif A (#31.1) to map |
| 33960 | | postprocess_20231221.mrc (#1) using 1187 atoms |
| 33961 | | average map value = 0.003717, steps = 44 |
| 33962 | | shifted from previous position = 0.0469 |
| 33963 | | rotated from previous position = 0.075 degrees |
| 33964 | | atoms outside contour = 668, contour level = 0.0036964 |
| 33965 | | |
| 33966 | | Position of 5mc7_human_zeta1COPI.cif A (#31.1) relative to |
| 33967 | | postprocess_20231221.mrc (#1) coordinates: |
| 33968 | | Matrix rotation and translation |
| 33969 | | 0.98923236 -0.11489400 -0.09065705 177.64035366 |
| 33970 | | 0.10267391 0.98624230 -0.12955380 214.56846478 |
| 33971 | | 0.10429477 0.11885070 0.98741942 218.18379972 |
| 33972 | | Axis 0.64778617 -0.50839292 0.56737088 |
| 33973 | | Axis point 0.00000000 -976.04731314 2269.13723907 |
| 33974 | | Rotation angle (degrees) 11.05396135 |
| 33975 | | Shift along axis 129.77901020 |
| 33976 | | |
| 33977 | | |
| 33978 | | > fitmap #31.1 inMap #1 |
| 33979 | | |
| 33980 | | Fit molecule 5mc7_human_zeta1COPI.cif A (#31.1) to map |
| 33981 | | postprocess_20231221.mrc (#1) using 1187 atoms |
| 33982 | | average map value = 0.003716, steps = 44 |
| 33983 | | shifted from previous position = 0.0412 |
| 33984 | | rotated from previous position = 0.0284 degrees |
| 33985 | | atoms outside contour = 667, contour level = 0.0036964 |
| 33986 | | |
| 33987 | | Position of 5mc7_human_zeta1COPI.cif A (#31.1) relative to |
| 33988 | | postprocess_20231221.mrc (#1) coordinates: |
| 33989 | | Matrix rotation and translation |
| 33990 | | 0.98924764 -0.11453745 -0.09094107 177.63369995 |
| 33991 | | 0.10226801 0.98626419 -0.12970815 214.61188083 |
| 33992 | | 0.10454836 0.11901312 0.98737304 218.16491755 |
| 33993 | | Axis 0.64853243 -0.50973217 0.56531302 |
| 33994 | | Axis point 0.00000000 -979.31739909 2265.77471243 |
| 33995 | | Rotation angle (degrees) 11.05533860 |
| 33996 | | Shift along axis 129.13810349 |
| 33997 | | |
| 33998 | | |
| 33999 | | > ui mousemode right zoom |
| 34000 | | |
| 34001 | | > hide #!1 models |
| 34002 | | |
| 34003 | | > ui mousemode right "translate selected models" |
| 34004 | | |
| 34005 | | > view matrix models |
| 34006 | | > #31,0.49942,0.66357,-0.55701,166.95,-0.76647,0.63812,0.072971,353.77,0.40386,0.39049,0.82729,-201 |
| 34007 | | |
| 34008 | | > ui mousemode right "rotate selected models" |
| 34009 | | |
| 34010 | | > view matrix models |
| 34011 | | > #31,-0.0050664,0.88664,-0.46243,214.32,-0.99768,0.026918,0.062541,626.7,0.067899,0.46167,0.88445,-142.2 |
| 34012 | | |
| 34013 | | > ui mousemode right "translate selected models" |
| 34014 | | |
| 34015 | | > view matrix models |
| 34016 | | > #31,-0.0050664,0.88664,-0.46243,215.66,-0.99768,0.026918,0.062541,624.93,0.067899,0.46167,0.88445,-143.47 |
| 34017 | | |
| 34018 | | > fitmap #31.1 inMap #1 |
| 34019 | | |
| 34020 | | Fit molecule 5mc7_human_zeta1COPI.cif A (#31.1) to map |
| 34021 | | postprocess_20231221.mrc (#1) using 1187 atoms |
| 34022 | | average map value = 0.003637, steps = 68 |
| 34023 | | shifted from previous position = 1.88 |
| 34024 | | rotated from previous position = 18.3 degrees |
| 34025 | | atoms outside contour = 677, contour level = 0.0036964 |
| 34026 | | |
| 34027 | | Position of 5mc7_human_zeta1COPI.cif A (#31.1) relative to |
| 34028 | | postprocess_20231221.mrc (#1) coordinates: |
| 34029 | | Matrix rotation and translation |
| 34030 | | 0.97473504 0.20185998 -0.09562508 177.00592570 |
| 34031 | | -0.21326145 0.96834748 -0.12970238 220.13806386 |
| 34032 | | 0.06641659 0.14681860 0.98693117 218.77322994 |
| 34033 | | Axis 0.52725961 -0.30897485 -0.79153764 |
| 34034 | | Axis point 987.15896034 -1139.52275349 0.00000000 |
| 34035 | | Rotation angle (degrees) 15.20210867 |
| 34036 | | Shift along axis -147.85629610 |
| 34037 | | |
| 34038 | | |
| 34039 | | > ui mousemode right "translate selected models" |
| 34040 | | |
| 34041 | | > view matrix models |
| 34042 | | > #31,-0.0050664,0.88664,-0.46243,213.12,-0.99768,0.026918,0.062541,623.69,0.067899,0.46167,0.88445,-140.94 |
| 34043 | | |
| 34044 | | > ui mousemode right "rotate selected models" |
| 34045 | | |
| 34046 | | > view matrix models |
| 34047 | | > #31,0.5719,0.73327,-0.36777,56.314,-0.66712,0.67662,0.31167,225.21,0.47738,0.067104,0.87613,-132.67 |
| 34048 | | |
| 34049 | | > ui mousemode right "translate selected models" |
| 34050 | | |
| 34051 | | > view matrix models |
| 34052 | | > #31,0.5719,0.73327,-0.36777,57.865,-0.66712,0.67662,0.31167,226.72,0.47738,0.067104,0.87613,-134.9 |
| 34053 | | |
| 34054 | | > view matrix models |
| 34055 | | > #31,0.5719,0.73327,-0.36777,58.366,-0.66712,0.67662,0.31167,224.23,0.47738,0.067104,0.87613,-135.91 |
| 34056 | | |
| 34057 | | > fitmap #31.1 inMap #1 |
| 34058 | | |
| 34059 | | Fit molecule 5mc7_human_zeta1COPI.cif A (#31.1) to map |
| 34060 | | postprocess_20231221.mrc (#1) using 1187 atoms |
| 34061 | | average map value = 0.004243, steps = 44 |
| 34062 | | shifted from previous position = 2.92 |
| 34063 | | rotated from previous position = 8.79 degrees |
| 34064 | | atoms outside contour = 535, contour level = 0.0036964 |
| 34065 | | |
| 34066 | | Position of 5mc7_human_zeta1COPI.cif A (#31.1) relative to |
| 34067 | | postprocess_20231221.mrc (#1) coordinates: |
| 34068 | | Matrix rotation and translation |
| 34069 | | 0.97561013 0.21805111 -0.02527050 173.84988966 |
| 34070 | | -0.21797583 0.97593735 0.00572980 216.59416419 |
| 34071 | | 0.02591181 -0.00008169 0.99966423 218.26571160 |
| 34072 | | Axis -0.01323624 -0.11657272 -0.99309396 |
| 34073 | | Axis point 937.80314794 -677.56254760 0.00000000 |
| 34074 | | Rotation angle (degrees) 12.68140254 |
| 34075 | | Shift along axis -244.30844807 |
| 34076 | | |
| 34077 | | |
| 34078 | | > view matrix models |
| 34079 | | > #31,0.5719,0.73327,-0.36777,58.257,-0.66712,0.67662,0.31167,224.66,0.47738,0.067104,0.87613,-136.13 |
| 34080 | | |
| 34081 | | > fitmap #31.1 inMap #1 |
| 34082 | | |
| 34083 | | Fit molecule 5mc7_human_zeta1COPI.cif A (#31.1) to map |
| 34084 | | postprocess_20231221.mrc (#1) using 1187 atoms |
| 34085 | | average map value = 0.004243, steps = 56 |
| 34086 | | shifted from previous position = 0.493 |
| 34087 | | rotated from previous position = 0.00302 degrees |
| 34088 | | atoms outside contour = 536, contour level = 0.0036964 |
| 34089 | | |
| 34090 | | Position of 5mc7_human_zeta1COPI.cif A (#31.1) relative to |
| 34091 | | postprocess_20231221.mrc (#1) coordinates: |
| 34092 | | Matrix rotation and translation |
| 34093 | | 0.97560056 0.21809656 -0.02524739 174.30252276 |
| 34094 | | -0.21802102 0.97592719 0.00574050 216.39994082 |
| 34095 | | 0.02589160 -0.00009597 0.99966475 218.28650928 |
| 34096 | | Axis -0.01329055 -0.11645144 -0.99310746 |
| 34097 | | Axis point 937.10166342 -679.47384917 0.00000000 |
| 34098 | | Rotation angle (degrees) 12.68390747 |
| 34099 | | Shift along axis -244.29862027 |
| 34100 | | |
| 34101 | | |
| 34102 | | > fitmap #31.1 inMap #1 |
| 34103 | | |
| 34104 | | Fit molecule 5mc7_human_zeta1COPI.cif A (#31.1) to map |
| 34105 | | postprocess_20231221.mrc (#1) using 1187 atoms |
| 34106 | | average map value = 0.004242, steps = 28 |
| 34107 | | shifted from previous position = 0.0505 |
| 34108 | | rotated from previous position = 0.0784 degrees |
| 34109 | | atoms outside contour = 536, contour level = 0.0036964 |
| 34110 | | |
| 34111 | | Position of 5mc7_human_zeta1COPI.cif A (#31.1) relative to |
| 34112 | | postprocess_20231221.mrc (#1) coordinates: |
| 34113 | | Matrix rotation and translation |
| 34114 | | 0.97564166 0.21802433 -0.02426420 174.29818099 |
| 34115 | | -0.21792528 0.97594255 0.00668655 216.34230322 |
| 34116 | | 0.02513830 -0.00123589 0.99968322 218.31938758 |
| 34117 | | Axis -0.01805431 -0.11258254 -0.99347834 |
| 34118 | | Axis point 940.89158557 -674.08609334 0.00000000 |
| 34119 | | Rotation angle (degrees) 12.67412881 |
| 34120 | | Shift along axis -244.39878296 |
| 34121 | | |
| 34122 | | |
| 34123 | | > fitmap #31.1 inMap #1 |
| 34124 | | |
| 34125 | | Fit molecule 5mc7_human_zeta1COPI.cif A (#31.1) to map |
| 34126 | | postprocess_20231221.mrc (#1) using 1187 atoms |
| 34127 | | average map value = 0.004243, steps = 28 |
| 34128 | | shifted from previous position = 0.0678 |
| 34129 | | rotated from previous position = 0.0773 degrees |
| 34130 | | atoms outside contour = 534, contour level = 0.0036964 |
| 34131 | | |
| 34132 | | Position of 5mc7_human_zeta1COPI.cif A (#31.1) relative to |
| 34133 | | postprocess_20231221.mrc (#1) coordinates: |
| 34134 | | Matrix rotation and translation |
| 34135 | | 0.97569828 0.21766563 -0.02519006 174.30319213 |
| 34136 | | -0.21758931 0.97602339 0.00576536 216.41284502 |
| 34137 | | 0.02584101 -0.00014416 0.99966605 218.28451887 |
| 34138 | | Axis -0.01348355 -0.11643589 -0.99310668 |
| 34139 | | Axis point 938.87049799 -680.82686875 0.00000000 |
| 34140 | | Rotation angle (degrees) 12.65841235 |
| 34141 | | Shift along axis -244.32826222 |
| 34142 | | |
| 34143 | | |
| 34144 | | > fitmap #31.1 inMap #1 |
| 34145 | | |
| 34146 | | Fit molecule 5mc7_human_zeta1COPI.cif A (#31.1) to map |
| 34147 | | postprocess_20231221.mrc (#1) using 1187 atoms |
| 34148 | | average map value = 0.004243, steps = 44 |
| 34149 | | shifted from previous position = 0.0146 |
| 34150 | | rotated from previous position = 0.035 degrees |
| 34151 | | atoms outside contour = 535, contour level = 0.0036964 |
| 34152 | | |
| 34153 | | Position of 5mc7_human_zeta1COPI.cif A (#31.1) relative to |
| 34154 | | postprocess_20231221.mrc (#1) coordinates: |
| 34155 | | Matrix rotation and translation |
| 34156 | | 0.97558580 0.21813613 -0.02547497 174.30486945 |
| 34157 | | -0.21806593 0.97591834 0.00553590 216.40767360 |
| 34158 | | 0.02606907 0.00015447 0.99966013 218.28104983 |
| 34159 | | Axis -0.01225085 -0.11734027 -0.99301620 |
| 34160 | | Axis point 936.10467349 -680.57464736 0.00000000 |
| 34161 | | Rotation angle (degrees) 12.68759066 |
| 34162 | | Shift along axis -244.28533769 |
| 34163 | | |
| 34164 | | |
| 34165 | | > fitmap #31.1 inMap #1 |
| 34166 | | |
| 34167 | | Fit molecule 5mc7_human_zeta1COPI.cif A (#31.1) to map |
| 34168 | | postprocess_20231221.mrc (#1) using 1187 atoms |
| 34169 | | average map value = 0.004242, steps = 28 |
| 34170 | | shifted from previous position = 0.0587 |
| 34171 | | rotated from previous position = 0.111 degrees |
| 34172 | | atoms outside contour = 536, contour level = 0.0036964 |
| 34173 | | |
| 34174 | | Position of 5mc7_human_zeta1COPI.cif A (#31.1) relative to |
| 34175 | | postprocess_20231221.mrc (#1) coordinates: |
| 34176 | | Matrix rotation and translation |
| 34177 | | 0.97564956 0.21800947 -0.02407940 174.29594873 |
| 34178 | | -0.21790629 0.97594558 0.00686077 216.33753389 |
| 34179 | | 0.02499589 -0.00144665 0.99968651 218.32268651 |
| 34180 | | Axis -0.01893437 -0.11185298 -0.99354436 |
| 34181 | | Axis point 941.64347534 -673.08423480 0.00000000 |
| 34182 | | Rotation angle (degrees) 12.67227216 |
| 34183 | | Shift along axis -244.41145590 |
| 34184 | | |
| 34185 | | |
| 34186 | | > fitmap #31.1 inMap #1 |
| 34187 | | |
| 34188 | | Fit molecule 5mc7_human_zeta1COPI.cif A (#31.1) to map |
| 34189 | | postprocess_20231221.mrc (#1) using 1187 atoms |
| 34190 | | average map value = 0.004243, steps = 28 |
| 34191 | | shifted from previous position = 0.0707 |
| 34192 | | rotated from previous position = 0.0881 degrees |
| 34193 | | atoms outside contour = 534, contour level = 0.0036964 |
| 34194 | | |
| 34195 | | Position of 5mc7_human_zeta1COPI.cif A (#31.1) relative to |
| 34196 | | postprocess_20231221.mrc (#1) coordinates: |
| 34197 | | Matrix rotation and translation |
| 34198 | | 0.97573383 0.21751480 -0.02511586 174.30425498 |
| 34199 | | -0.21743675 0.97605700 0.00583087 216.41142752 |
| 34200 | | 0.02578281 -0.00022827 0.99966754 218.28714955 |
| 34201 | | Axis -0.01383486 -0.11621723 -0.99312746 |
| 34202 | | Axis point 939.66803661 -680.97238480 0.00000000 |
| 34203 | | Rotation angle (degrees) 12.64917355 |
| 34204 | | Shift along axis -244.34917355 |
| 34205 | | |
| 34206 | | |
| 34207 | | > fitmap #10 inMap #1 |
| 34208 | | |
| 34209 | | Fit molecule CopZ1_P61924.pdb (#10) to map postprocess_20231221.mrc (#1) using |
| 34210 | | 1420 atoms |
| 34211 | | average map value = 0.003933, steps = 44 |
| 34212 | | shifted from previous position = 0.0503 |
| 34213 | | rotated from previous position = 0.0659 degrees |
| 34214 | | atoms outside contour = 724, contour level = 0.0036964 |
| 34215 | | |
| 34216 | | Position of CopZ1_P61924.pdb (#10) relative to postprocess_20231221.mrc (#1) |
| 34217 | | coordinates: |
| 34218 | | Matrix rotation and translation |
| 34219 | | 0.16464547 -0.94010508 -0.29848672 230.52921764 |
| 34220 | | -0.38697262 0.21678845 -0.89624493 241.48307989 |
| 34221 | | 0.90727287 0.26306886 -0.32810169 218.16058628 |
| 34222 | | Axis 0.65804065 -0.68440386 0.31396473 |
| 34223 | | Axis point 143.59602606 0.00000000 249.37721862 |
| 34224 | | Rotation angle (degrees) 118.25092460 |
| 34225 | | Shift along axis 54.92037460 |
| 34226 | | |
| 34227 | | |
| 34228 | | > fitmap #10 inMap #1 |
| 34229 | | |
| 34230 | | Fit molecule CopZ1_P61924.pdb (#10) to map postprocess_20231221.mrc (#1) using |
| 34231 | | 1420 atoms |
| 34232 | | average map value = 0.003933, steps = 40 |
| 34233 | | shifted from previous position = 0.0453 |
| 34234 | | rotated from previous position = 0.0539 degrees |
| 34235 | | atoms outside contour = 728, contour level = 0.0036964 |
| 34236 | | |
| 34237 | | Position of CopZ1_P61924.pdb (#10) relative to postprocess_20231221.mrc (#1) |
| 34238 | | coordinates: |
| 34239 | | Matrix rotation and translation |
| 34240 | | 0.16475228 -0.93984435 -0.29924787 230.50212183 |
| 34241 | | -0.38665624 0.21756915 -0.89619229 241.46489641 |
| 34242 | | 0.90738837 0.26335578 -0.32755167 218.19248372 |
| 34243 | | Axis 0.65788547 -0.68460159 0.31385885 |
| 34244 | | Axis point 143.42644626 0.00000000 249.42964094 |
| 34245 | | Rotation angle (degrees) 118.20418399 |
| 34246 | | Shift along axis 54.81838662 |
| 34247 | | |
| 34248 | | |
| 34249 | | > fitmap #10 inMap #1 |
| 34250 | | |
| 34251 | | Fit molecule CopZ1_P61924.pdb (#10) to map postprocess_20231221.mrc (#1) using |
| 34252 | | 1420 atoms |
| 34253 | | average map value = 0.003933, steps = 44 |
| 34254 | | shifted from previous position = 0.0111 |
| 34255 | | rotated from previous position = 0.0464 degrees |
| 34256 | | atoms outside contour = 730, contour level = 0.0036964 |
| 34257 | | |
| 34258 | | Position of CopZ1_P61924.pdb (#10) relative to postprocess_20231221.mrc (#1) |
| 34259 | | coordinates: |
| 34260 | | Matrix rotation and translation |
| 34261 | | 0.16528469 -0.93968504 -0.29945452 230.49692380 |
| 34262 | | -0.38615897 0.21772757 -0.89636821 241.46057391 |
| 34263 | | 0.90750329 0.26379299 -0.32688077 218.20121332 |
| 34264 | | Axis 0.65796097 -0.68450069 0.31392064 |
| 34265 | | Axis point 143.36777827 0.00000000 249.51847068 |
| 34266 | | Rotation angle (degrees) 118.15992656 |
| 34267 | | Shift along axis 54.87591693 |
| 34268 | | |
| 34269 | | |
| 34270 | | > fitmap #10 inMap #1 |
| 34271 | | |
| 34272 | | Fit molecule CopZ1_P61924.pdb (#10) to map postprocess_20231221.mrc (#1) using |
| 34273 | | 1420 atoms |
| 34274 | | average map value = 0.003933, steps = 44 |
| 34275 | | shifted from previous position = 0.00482 |
| 34276 | | rotated from previous position = 0.00886 degrees |
| 34277 | | atoms outside contour = 729, contour level = 0.0036964 |
| 34278 | | |
| 34279 | | Position of CopZ1_P61924.pdb (#10) relative to postprocess_20231221.mrc (#1) |
| 34280 | | coordinates: |
| 34281 | | Matrix rotation and translation |
| 34282 | | 0.16517051 -0.93970815 -0.29944501 230.49930068 |
| 34283 | | -0.38625587 0.21772958 -0.89632597 241.46236599 |
| 34284 | | 0.90748285 0.26370901 -0.32700528 218.19738498 |
| 34285 | | Axis 0.65793667 -0.68453289 0.31390135 |
| 34286 | | Axis point 143.37628380 0.00000000 249.50094452 |
| 34287 | | Rotation angle (degrees) 118.16761754 |
| 34288 | | Shift along axis 54.85746595 |
| 34289 | | |
| 34290 | | |
| 34291 | | > fitmap #10 inMap #1 |
| 34292 | | |
| 34293 | | Fit molecule CopZ1_P61924.pdb (#10) to map postprocess_20231221.mrc (#1) using |
| 34294 | | 1420 atoms |
| 34295 | | average map value = 0.003933, steps = 36 |
| 34296 | | shifted from previous position = 0.00809 |
| 34297 | | rotated from previous position = 0.0184 degrees |
| 34298 | | atoms outside contour = 727, contour level = 0.0036964 |
| 34299 | | |
| 34300 | | Position of CopZ1_P61924.pdb (#10) relative to postprocess_20231221.mrc (#1) |
| 34301 | | coordinates: |
| 34302 | | Matrix rotation and translation |
| 34303 | | 0.16519231 -0.93971155 -0.29942231 230.49169125 |
| 34304 | | -0.38654060 0.21761768 -0.89623039 241.46358631 |
| 34305 | | 0.90735763 0.26378925 -0.32728790 218.19578263 |
| 34306 | | Axis 0.65800248 -0.68452651 0.31377732 |
| 34307 | | Axis point 143.40144878 -0.00000000 249.45936266 |
| 34308 | | Rotation angle (degrees) 118.17973038 |
| 34309 | | Shift along axis 54.84076550 |
| 34310 | | |
| 34311 | | |
| 34312 | | > hide #10 models |
| 34313 | | |
| 34314 | | > hide #!31 models |
| 34315 | | |
| 34316 | | > select subtract #31 |
| 34317 | | |
| 34318 | | Nothing selected |
| 34319 | | |
| 34320 | | > show #32 models |
| 34321 | | |
| 34322 | | > split #32 chains |
| 34323 | | |
| 34324 | | Split 5mu7_Thermophila_beta_deltaCOPI.cif (#32) into 2 models |
| 34325 | | Chain information for 5mu7_Thermophila_beta_deltaCOPI.cif A #32.1 |
| 34326 | | --- |
| 34327 | | Chain | Description |
| 34328 | | A | No description available |
| 34329 | | |
| 34330 | | Chain information for 5mu7_Thermophila_beta_deltaCOPI.cif B #32.2 |
| 34331 | | --- |
| 34332 | | Chain | Description |
| 34333 | | B | No description available |
| 34334 | | |
| 34335 | | |
| 34336 | | > select add #32.1 |
| 34337 | | |
| 34338 | | 2991 atoms, 3010 bonds, 400 residues, 1 model selected |
| 34339 | | |
| 34340 | | > view matrix models #32.1,1,0,0,310.44,0,1,0,269.77,0,0,1,353.04 |
| 34341 | | |
| 34342 | | > undo |
| 34343 | | |
| 34344 | | > ui mousemode right zoom |
| 34345 | | |
| 34346 | | > show #4 models |
| 34347 | | |
| 34348 | | > show #!9 models |
| 34349 | | |
| 34350 | | > hide #!32 models |
| 34351 | | |
| 34352 | | > show #!32 models |
| 34353 | | |
| 34354 | | > ui mousemode right "translate selected models" |
| 34355 | | |
| 34356 | | > select add #32 |
| 34357 | | |
| 34358 | | 4213 atoms, 4232 bonds, 565 residues, 3 models selected |
| 34359 | | |
| 34360 | | > view matrix models #32,1,0,0,6.3488,0,1,0,-55.027,0,0,1,-14.936 |
| 34361 | | |
| 34362 | | > hide #!9 models |
| 34363 | | |
| 34364 | | > show #8 models |
| 34365 | | |
| 34366 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 34367 | | > dataset/Chimera sessions/20240212_leaf_fitting_v9.cxs" |
| 34368 | | |
| 34369 | | > select subtract #32.1 |
| 34370 | | |
| 34371 | | 1222 atoms, 1222 bonds, 165 residues, 2 models selected |
| 34372 | | |
| 34373 | | > color sel sienna |
| 34374 | | |
| 34375 | | > select subtract #32.2 |
| 34376 | | |
| 34377 | | 1 model selected |
| 34378 | | |
| 34379 | | > select add #32.1 |
| 34380 | | |
| 34381 | | 2991 atoms, 3010 bonds, 400 residues, 2 models selected |
| 34382 | | |
| 34383 | | > color sel dark green |
| 34384 | | |
| 34385 | | > select subtract #32.1 |
| 34386 | | |
| 34387 | | 1 model selected |
| 34388 | | |
| 34389 | | > select add #32 |
| 34390 | | |
| 34391 | | 4213 atoms, 4232 bonds, 565 residues, 3 models selected |
| 34392 | | |
| 34393 | | > select subtract #32 |
| 34394 | | |
| 34395 | | Nothing selected |
| 34396 | | |
| 34397 | | > select add #32 |
| 34398 | | |
| 34399 | | 4213 atoms, 4232 bonds, 565 residues, 3 models selected |
| 34400 | | |
| 34401 | | > ui mousemode right "rotate selected models" |
| 34402 | | |
| 34403 | | > view matrix models |
| 34404 | | > #32,0.86713,-0.47402,-0.15291,246.78,0.40908,0.50265,0.76157,-304.31,-0.28414,-0.72294,0.62978,426.28 |
| 34405 | | |
| 34406 | | > view matrix models |
| 34407 | | > #32,0.80472,-0.48596,-0.34097,336.09,0.44907,0.12266,0.88504,-245.39,-0.38827,-0.86533,0.31694,611.99 |
| 34408 | | |
| 34409 | | > ui mousemode right "translate selected models" |
| 34410 | | |
| 34411 | | > view matrix models |
| 34412 | | > #32,0.80472,-0.48596,-0.34097,286.27,0.44907,0.12266,0.88504,-195.95,-0.38827,-0.86533,0.31694,603.62 |
| 34413 | | |
| 34414 | | > ui mousemode right "rotate selected models" |
| 34415 | | |
| 34416 | | > view matrix models |
| 34417 | | > #32,-0.69152,-0.70058,0.17603,670.7,-0.20042,-0.048039,-0.97853,712.99,0.69399,-0.71196,-0.10719,343.18 |
| 34418 | | |
| 34419 | | > ui mousemode right "translate selected models" |
| 34420 | | |
| 34421 | | > view matrix models |
| 34422 | | > #32,-0.69152,-0.70058,0.17603,672.68,-0.20042,-0.048039,-0.97853,719.82,0.69399,-0.71196,-0.10719,360.23 |
| 34423 | | |
| 34424 | | > ui mousemode right zoom |
| 34425 | | |
| 34426 | | > hide #!32 models |
| 34427 | | |
| 34428 | | > show #!32 models |
| 34429 | | |
| 34430 | | > hide #!32 models |
| 34431 | | |
| 34432 | | > show #!32 models |
| 34433 | | |
| 34434 | | > hide #!32 models |
| 34435 | | |
| 34436 | | > show #!32 models |
| 34437 | | |
| 34438 | | > ui mousemode right "rotate selected models" |
| 34439 | | |
| 34440 | | > view matrix models |
| 34441 | | > #32,-0.28518,-0.53956,-0.79218,823.6,0.94948,-0.04611,-0.31041,106.73,0.13096,-0.84068,0.52545,368.03 |
| 34442 | | |
| 34443 | | > ui mousemode right "translate selected models" |
| 34444 | | |
| 34445 | | > view matrix models |
| 34446 | | > #32,-0.28518,-0.53956,-0.79218,806.69,0.94948,-0.04611,-0.31041,118.41,0.13096,-0.84068,0.52545,363.68 |
| 34447 | | |
| 34448 | | > view matrix models |
| 34449 | | > #32,-0.28518,-0.53956,-0.79218,806.23,0.94948,-0.04611,-0.31041,118.56,0.13096,-0.84068,0.52545,363.19 |
| 34450 | | |
| 34451 | | > view matrix models |
| 34452 | | > #32,-0.28518,-0.53956,-0.79218,804.04,0.94948,-0.04611,-0.31041,116.36,0.13096,-0.84068,0.52545,361.62 |
| 34453 | | |
| 34454 | | > view matrix models |
| 34455 | | > #32,-0.28518,-0.53956,-0.79218,804.76,0.94948,-0.04611,-0.31041,115.3,0.13096,-0.84068,0.52545,362.39 |
| 34456 | | |
| 34457 | | > ui mousemode right "rotate selected models" |
| 34458 | | |
| 34459 | | > view matrix models |
| 34460 | | > #32,-0.0016578,-0.50367,-0.8639,723.67,0.9595,0.24256,-0.14326,-31.15,0.2817,-0.82915,0.48287,322.86 |
| 34461 | | |
| 34462 | | > ui mousemode right "translate selected models" |
| 34463 | | |
| 34464 | | > view matrix models |
| 34465 | | > #32,-0.0016578,-0.50367,-0.8639,726.03,0.9595,0.24256,-0.14326,-32.307,0.2817,-0.82915,0.48287,323.95 |
| 34466 | | |
| 34467 | | > ui mousemode right "rotate selected models" |
| 34468 | | |
| 34469 | | > view matrix models |
| 34470 | | > #32,-0.1547,-0.53164,-0.83273,774.68,0.93159,0.20215,-0.30212,43.964,0.32895,-0.8225,0.46399,312.71 |
| 34471 | | |
| 34472 | | > ui mousemode right "translate selected models" |
| 34473 | | |
| 34474 | | > view matrix models |
| 34475 | | > #32,-0.1547,-0.53164,-0.83273,776.7,0.93159,0.20215,-0.30212,41.911,0.32895,-0.8225,0.46399,314.56 |
| 34476 | | |
| 34477 | | > view matrix models |
| 34478 | | > #32,-0.1547,-0.53164,-0.83273,773.69,0.93159,0.20215,-0.30212,39.425,0.32895,-0.8225,0.46399,315.24 |
| 34479 | | |
| 34480 | | > ui mousemode right "rotate selected models" |
| 34481 | | |
| 34482 | | > view matrix models |
| 34483 | | > #32,-0.5662,-0.55884,-0.6059,839.99,0.80288,-0.20757,-0.55883,295.21,0.18653,-0.80288,0.56621,321.67 |
| 34484 | | |
| 34485 | | > ui mousemode right "translate selected models" |
| 34486 | | |
| 34487 | | > view matrix models |
| 34488 | | > #32,-0.5662,-0.55884,-0.6059,839.41,0.80288,-0.20757,-0.55883,296.1,0.18653,-0.80288,0.56621,319.88 |
| 34489 | | |
| 34490 | | > ui mousemode right "rotate selected models" |
| 34491 | | |
| 34492 | | > view matrix models |
| 34493 | | > #32,-0.50172,-0.63014,-0.59262,834.98,0.83927,-0.18865,-0.50994,261.4,0.20954,-0.75322,0.62351,277.44 |
| 34494 | | |
| 34495 | | > ui mousemode right "translate selected models" |
| 34496 | | |
| 34497 | | > view matrix models |
| 34498 | | > #32,-0.50172,-0.63014,-0.59262,835.58,0.83927,-0.18865,-0.50994,261.52,0.20954,-0.75322,0.62351,278.27 |
| 34499 | | |
| 34500 | | > view matrix models |
| 34501 | | > #32,-0.50172,-0.63014,-0.59262,835.95,0.83927,-0.18865,-0.50994,262.26,0.20954,-0.75322,0.62351,278.02 |
| 34502 | | |
| 34503 | | > ui mousemode right "rotate selected models" |
| 34504 | | |
| 34505 | | > view matrix models |
| 34506 | | > #32,-0.38225,-0.59979,-0.70294,824.97,0.90132,-0.074311,-0.42672,178.3,0.20371,-0.7967,0.56902,311.9 |
| 34507 | | |
| 34508 | | > view matrix models |
| 34509 | | > #32,-0.38961,-0.59043,-0.70683,825.91,0.89701,-0.069323,-0.43653,181.59,0.20874,-0.80411,0.55663,316.73 |
| 34510 | | |
| 34511 | | > ui mousemode right "translate selected models" |
| 34512 | | |
| 34513 | | > view matrix models |
| 34514 | | > #32,-0.38961,-0.59043,-0.70683,825.37,0.89701,-0.069323,-0.43653,181.63,0.20874,-0.80411,0.55663,316.62 |
| 34515 | | |
| 34516 | | > select subtract #32 |
| 34517 | | |
| 34518 | | Nothing selected |
| 34519 | | |
| 34520 | | > show #!1 models |
| 34521 | | |
| 34522 | | > select add #32.1 |
| 34523 | | |
| 34524 | | 2991 atoms, 3010 bonds, 400 residues, 1 model selected |
| 34525 | | |
| 34526 | | > fitmap #32.1 inMap #1 |
| 34527 | | |
| 34528 | | Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) to map |
| 34529 | | postprocess_20231221.mrc (#1) using 2991 atoms |
| 34530 | | average map value = 0.004241, steps = 88 |
| 34531 | | shifted from previous position = 3.45 |
| 34532 | | rotated from previous position = 11.7 degrees |
| 34533 | | atoms outside contour = 1593, contour level = 0.0036964 |
| 34534 | | |
| 34535 | | Position of 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) relative to |
| 34536 | | postprocess_20231221.mrc (#1) coordinates: |
| 34537 | | Matrix rotation and translation |
| 34538 | | 0.99523070 -0.08932351 0.03920676 204.56594606 |
| 34539 | | 0.08053771 0.97916422 0.18641649 155.92418488 |
| 34540 | | -0.05504123 -0.18236979 0.98168820 251.08480869 |
| 34541 | | Axis -0.88476167 0.22611203 0.40751705 |
| 34542 | | Axis point 0.00000000 1545.72793857 -716.32216947 |
| 34543 | | Rotation angle (degrees) 12.02918781 |
| 34544 | | Shift along axis -43.41443344 |
| 34545 | | |
| 34546 | | |
| 34547 | | > fitmap #32.1 inMap #1 |
| 34548 | | |
| 34549 | | Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) to map |
| 34550 | | postprocess_20231221.mrc (#1) using 2991 atoms |
| 34551 | | average map value = 0.004241, steps = 88 |
| 34552 | | shifted from previous position = 3.45 |
| 34553 | | rotated from previous position = 11.7 degrees |
| 34554 | | atoms outside contour = 1593, contour level = 0.0036964 |
| 34555 | | |
| 34556 | | Position of 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) relative to |
| 34557 | | postprocess_20231221.mrc (#1) coordinates: |
| 34558 | | Matrix rotation and translation |
| 34559 | | 0.99523070 -0.08932351 0.03920676 204.56594606 |
| 34560 | | 0.08053771 0.97916422 0.18641649 155.92418488 |
| 34561 | | -0.05504123 -0.18236979 0.98168820 251.08480869 |
| 34562 | | Axis -0.88476167 0.22611203 0.40751705 |
| 34563 | | Axis point 0.00000000 1545.72793857 -716.32216947 |
| 34564 | | Rotation angle (degrees) 12.02918781 |
| 34565 | | Shift along axis -43.41443344 |
| 34566 | | |
| 34567 | | |
| 34568 | | > select subtract #32.1 |
| 34569 | | |
| 34570 | | Nothing selected |
| 34571 | | |
| 34572 | | > select add #32.2 |
| 34573 | | |
| 34574 | | 1222 atoms, 1222 bonds, 165 residues, 1 model selected |
| 34575 | | |
| 34576 | | > fitmap #32.2 inMap #1 |
| 34577 | | |
| 34578 | | Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif B (#32.2) to map |
| 34579 | | postprocess_20231221.mrc (#1) using 1222 atoms |
| 34580 | | average map value = 0.004216, steps = 52 |
| 34581 | | shifted from previous position = 1.66 |
| 34582 | | rotated from previous position = 10.6 degrees |
| 34583 | | atoms outside contour = 618, contour level = 0.0036964 |
| 34584 | | |
| 34585 | | Position of 5mu7_Thermophila_beta_deltaCOPI.cif B (#32.2) relative to |
| 34586 | | postprocess_20231221.mrc (#1) coordinates: |
| 34587 | | Matrix rotation and translation |
| 34588 | | 0.98239247 0.00608297 0.18672983 201.11786552 |
| 34589 | | -0.00915230 0.99983674 0.01557958 155.89204427 |
| 34590 | | -0.18660457 -0.01701427 0.98228776 245.74518368 |
| 34591 | | Axis -0.08690208 0.99538837 -0.04062043 |
| 34592 | | Axis point 1439.71905732 0.00000000 -1000.73205923 |
| 34593 | | Rotation angle (degrees) 10.80879096 |
| 34594 | | Shift along axis 127.71329308 |
| 34595 | | |
| 34596 | | |
| 34597 | | > fitmap #32.2 inMap #1 |
| 34598 | | |
| 34599 | | Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif B (#32.2) to map |
| 34600 | | postprocess_20231221.mrc (#1) using 1222 atoms |
| 34601 | | average map value = 0.004217, steps = 48 |
| 34602 | | shifted from previous position = 0.0497 |
| 34603 | | rotated from previous position = 0.0595 degrees |
| 34604 | | atoms outside contour = 616, contour level = 0.0036964 |
| 34605 | | |
| 34606 | | Position of 5mu7_Thermophila_beta_deltaCOPI.cif B (#32.2) relative to |
| 34607 | | postprocess_20231221.mrc (#1) coordinates: |
| 34608 | | Matrix rotation and translation |
| 34609 | | 0.98236776 0.00609305 0.18685946 201.07531739 |
| 34610 | | -0.00897212 0.99985366 0.01456580 155.88604759 |
| 34611 | | -0.18674336 -0.01598549 0.98227867 245.68947894 |
| 34612 | | Axis -0.08143698 0.99586917 -0.04015745 |
| 34613 | | Axis point 1437.96863175 0.00000000 -996.61080216 |
| 34614 | | Rotation angle (degrees) 10.81137091 |
| 34615 | | Shift along axis 129.00087941 |
| 34616 | | |
| 34617 | | |
| 34618 | | > select add #32 |
| 34619 | | |
| 34620 | | 4213 atoms, 4232 bonds, 565 residues, 3 models selected |
| 34621 | | |
| 34622 | | > select subtract #32 |
| 34623 | | |
| 34624 | | Nothing selected |
| 34625 | | |
| 34626 | | > hide #!32 models |
| 34627 | | |
| 34628 | | > show #!32 models |
| 34629 | | |
| 34630 | | > hide #!32 models |
| 34631 | | |
| 34632 | | > show #!32 models |
| 34633 | | |
| 34634 | | > hide #!1 models |
| 34635 | | |
| 34636 | | > select add #32.2 |
| 34637 | | |
| 34638 | | 1222 atoms, 1222 bonds, 165 residues, 1 model selected |
| 34639 | | |
| 34640 | | > view matrix models |
| 34641 | | > #32.2,0.98283,0.0078888,0.18437,313.02,-0.0096897,0.99991,0.0088691,268.96,-0.18428,-0.010503,0.98282,357.09 |
| 34642 | | |
| 34643 | | > fitmap #32.2 inMap #1 |
| 34644 | | |
| 34645 | | Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif B (#32.2) to map |
| 34646 | | postprocess_20231221.mrc (#1) using 1222 atoms |
| 34647 | | average map value = 0.004217, steps = 48 |
| 34648 | | shifted from previous position = 1.52 |
| 34649 | | rotated from previous position = 0.00409 degrees |
| 34650 | | atoms outside contour = 616, contour level = 0.0036964 |
| 34651 | | |
| 34652 | | Position of 5mu7_Thermophila_beta_deltaCOPI.cif B (#32.2) relative to |
| 34653 | | postprocess_20231221.mrc (#1) coordinates: |
| 34654 | | Matrix rotation and translation |
| 34655 | | 0.98236810 0.00610753 0.18685720 201.07437146 |
| 34656 | | -0.00899935 0.99985245 0.01463173 155.88746910 |
| 34657 | | -0.18674027 -0.01605534 0.98227812 245.69185612 |
| 34658 | | Axis -0.08179732 0.99583518 -0.04026784 |
| 34659 | | Axis point 1438.08129766 0.00000000 -996.81322728 |
| 34660 | | Rotation angle (degrees) 10.81158760 |
| 34661 | | Shift along axis 128.89739988 |
| 34662 | | |
| 34663 | | |
| 34664 | | > view matrix models |
| 34665 | | > #32.2,0.98283,0.0079035,0.18437,313.39,-0.009717,0.99991,0.0089351,268.63,-0.18428,-0.010573,0.98282,357 |
| 34666 | | |
| 34667 | | > fitmap #32.2 inMap #1 |
| 34668 | | |
| 34669 | | Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif B (#32.2) to map |
| 34670 | | postprocess_20231221.mrc (#1) using 1222 atoms |
| 34671 | | average map value = 0.004217, steps = 48 |
| 34672 | | shifted from previous position = 1.29 |
| 34673 | | rotated from previous position = 0.0164 degrees |
| 34674 | | atoms outside contour = 617, contour level = 0.0036964 |
| 34675 | | |
| 34676 | | Position of 5mu7_Thermophila_beta_deltaCOPI.cif B (#32.2) relative to |
| 34677 | | postprocess_20231221.mrc (#1) coordinates: |
| 34678 | | Matrix rotation and translation |
| 34679 | | 0.98238754 0.00633303 0.18674746 201.05607706 |
| 34680 | | -0.00924431 0.99984888 0.01472270 155.89686848 |
| 34681 | | -0.18662599 -0.01618975 0.98229763 245.68968712 |
| 34682 | | Axis -0.08243879 0.99572992 -0.04154239 |
| 34683 | | Axis point 1439.69594941 0.00000000 -997.54365442 |
| 34684 | | Rotation angle (degrees) 10.80618268 |
| 34685 | | Shift along axis 128.44982063 |
| 34686 | | |
| 34687 | | |
| 34688 | | > fitmap #32.2 inMap #1 |
| 34689 | | |
| 34690 | | Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif B (#32.2) to map |
| 34691 | | postprocess_20231221.mrc (#1) using 1222 atoms |
| 34692 | | average map value = 0.004216, steps = 44 |
| 34693 | | shifted from previous position = 0.0615 |
| 34694 | | rotated from previous position = 0.102 degrees |
| 34695 | | atoms outside contour = 619, contour level = 0.0036964 |
| 34696 | | |
| 34697 | | Position of 5mu7_Thermophila_beta_deltaCOPI.cif B (#32.2) relative to |
| 34698 | | postprocess_20231221.mrc (#1) coordinates: |
| 34699 | | Matrix rotation and translation |
| 34700 | | 0.98230680 0.00593569 0.18718472 201.13630720 |
| 34701 | | -0.00917519 0.99982268 0.01644478 155.90258547 |
| 34702 | | -0.18705391 -0.01787128 0.98218708 245.78808678 |
| 34703 | | Axis -0.09123885 0.99501825 -0.04017650 |
| 34704 | | Axis point 1436.53838089 0.00000000 -1000.60261088 |
| 34705 | | Rotation angle (degrees) 10.83936585 |
| 34706 | | Shift along axis 126.89956630 |
| 34707 | | |
| 34708 | | |
| 34709 | | > fitmap #32.2 inMap #1 |
| 34710 | | |
| 34711 | | Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif B (#32.2) to map |
| 34712 | | postprocess_20231221.mrc (#1) using 1222 atoms |
| 34713 | | average map value = 0.004216, steps = 48 |
| 34714 | | shifted from previous position = 0.0108 |
| 34715 | | rotated from previous position = 0.0508 degrees |
| 34716 | | atoms outside contour = 617, contour level = 0.0036964 |
| 34717 | | |
| 34718 | | Position of 5mu7_Thermophila_beta_deltaCOPI.cif B (#32.2) relative to |
| 34719 | | postprocess_20231221.mrc (#1) coordinates: |
| 34720 | | Matrix rotation and translation |
| 34721 | | 0.98239838 0.00615838 0.18669626 201.10767232 |
| 34722 | | -0.00925467 0.99983364 0.01571762 155.89759312 |
| 34723 | | -0.18656840 -0.01716878 0.98229194 245.74769396 |
| 34724 | | Axis -0.08769065 0.99529959 -0.04109847 |
| 34725 | | Axis point 1440.30349037 0.00000000 -1001.25410015 |
| 34726 | | Rotation angle (degrees) 10.80772335 |
| 34727 | | Shift along axis 127.42969183 |
| 34728 | | |
| 34729 | | |
| 34730 | | > fitmap #8 inMap #1 |
| 34731 | | |
| 34732 | | Fit molecule CopD_Q5XJY5 (#8) to map postprocess_20231221.mrc (#1) using 1462 |
| 34733 | | atoms |
| 34734 | | average map value = 0.003729, steps = 40 |
| 34735 | | shifted from previous position = 0.0262 |
| 34736 | | rotated from previous position = 0.0998 degrees |
| 34737 | | atoms outside contour = 873, contour level = 0.0036964 |
| 34738 | | |
| 34739 | | Position of CopD_Q5XJY5 (#8) relative to postprocess_20231221.mrc (#1) |
| 34740 | | coordinates: |
| 34741 | | Matrix rotation and translation |
| 34742 | | 0.23865497 0.93132114 0.27510863 -92.99261701 |
| 34743 | | -0.88651295 0.09329923 0.45319978 105.78305390 |
| 34744 | | 0.39640711 -0.35204574 0.84789457 472.37094058 |
| 34745 | | Axis -0.40426058 -0.06089596 -0.91261441 |
| 34746 | | Axis point -102.29713427 189.82668068 0.00000000 |
| 34747 | | Rotation angle (degrees) 84.84074291 |
| 34748 | | Shift along axis -399.94103851 |
| 34749 | | |
| 34750 | | |
| 34751 | | > fitmap #8 inMap #1 |
| 34752 | | |
| 34753 | | Fit molecule CopD_Q5XJY5 (#8) to map postprocess_20231221.mrc (#1) using 1462 |
| 34754 | | atoms |
| 34755 | | average map value = 0.003728, steps = 48 |
| 34756 | | shifted from previous position = 0.0483 |
| 34757 | | rotated from previous position = 0.0351 degrees |
| 34758 | | atoms outside contour = 875, contour level = 0.0036964 |
| 34759 | | |
| 34760 | | Position of CopD_Q5XJY5 (#8) relative to postprocess_20231221.mrc (#1) |
| 34761 | | coordinates: |
| 34762 | | Matrix rotation and translation |
| 34763 | | 0.23841751 0.93124468 0.27557296 -92.95214680 |
| 34764 | | -0.88673475 0.09302332 0.45282244 105.83055914 |
| 34765 | | 0.39605377 -0.35232091 0.84794539 472.46264138 |
| 34766 | | Axis -0.40420083 -0.06048419 -0.91266826 |
| 34767 | | Axis point -102.16592094 189.89358785 0.00000000 |
| 34768 | | Rotation angle (degrees) 84.85404781 |
| 34769 | | Shift along axis -400.03139873 |
| 34770 | | |
| 34771 | | |
| 34772 | | > fitmap #8 inMap #1 |
| 34773 | | |
| 34774 | | Fit molecule CopD_Q5XJY5 (#8) to map postprocess_20231221.mrc (#1) using 1462 |
| 34775 | | atoms |
| 34776 | | average map value = 0.003728, steps = 48 |
| 34777 | | shifted from previous position = 0.0228 |
| 34778 | | rotated from previous position = 0.118 degrees |
| 34779 | | atoms outside contour = 877, contour level = 0.0036964 |
| 34780 | | |
| 34781 | | Position of CopD_Q5XJY5 (#8) relative to postprocess_20231221.mrc (#1) |
| 34782 | | coordinates: |
| 34783 | | Matrix rotation and translation |
| 34784 | | 0.23978913 0.93130708 0.27416839 -92.95993950 |
| 34785 | | -0.88604379 0.09452161 0.45386351 105.51737731 |
| 34786 | | 0.39677146 -0.35175673 0.84784410 472.35122351 |
| 34787 | | Axis -0.40449126 -0.06155738 -0.91246781 |
| 34788 | | Axis point -102.60506985 189.74855585 0.00000000 |
| 34789 | | Rotation angle (degrees) 84.77440663 |
| 34790 | | Shift along axis -399.89917828 |
| 34791 | | |
| 34792 | | |
| 34793 | | > fitmap #8 inMap #1 |
| 34794 | | |
| 34795 | | Fit molecule CopD_Q5XJY5 (#8) to map postprocess_20231221.mrc (#1) using 1462 |
| 34796 | | atoms |
| 34797 | | average map value = 0.003728, steps = 48 |
| 34798 | | shifted from previous position = 0.00444 |
| 34799 | | rotated from previous position = 0.0249 degrees |
| 34800 | | atoms outside contour = 878, contour level = 0.0036964 |
| 34801 | | |
| 34802 | | Position of CopD_Q5XJY5 (#8) relative to postprocess_20231221.mrc (#1) |
| 34803 | | coordinates: |
| 34804 | | Matrix rotation and translation |
| 34805 | | 0.24019715 0.93124148 0.27403402 -92.90318641 |
| 34806 | | -0.88593165 0.09491266 0.45400078 105.41274879 |
| 34807 | | 0.39677506 -0.35182511 0.84781404 472.36960966 |
| 34808 | | Axis -0.40460883 -0.06162883 -0.91241086 |
| 34809 | | Axis point -102.67598760 189.73986486 0.00000000 |
| 34810 | | Rotation angle (degrees) 84.75228379 |
| 34811 | | Shift along axis -399.90217788 |
| 34812 | | |
| 34813 | | |
| 34814 | | > fitmap #32.2 inMap #1 |
| 34815 | | |
| 34816 | | Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif B (#32.2) to map |
| 34817 | | postprocess_20231221.mrc (#1) using 1222 atoms |
| 34818 | | average map value = 0.004216, steps = 48 |
| 34819 | | shifted from previous position = 0.00417 |
| 34820 | | rotated from previous position = 0.0207 degrees |
| 34821 | | atoms outside contour = 618, contour level = 0.0036964 |
| 34822 | | |
| 34823 | | Position of 5mu7_Thermophila_beta_deltaCOPI.cif B (#32.2) relative to |
| 34824 | | postprocess_20231221.mrc (#1) coordinates: |
| 34825 | | Matrix rotation and translation |
| 34826 | | 0.98241385 0.00607818 0.18661745 201.11227473 |
| 34827 | | -0.00911074 0.99983995 0.01539681 155.88981786 |
| 34828 | | -0.18649400 -0.01682626 0.98231200 245.73446032 |
| 34829 | | Axis -0.08597216 0.99547303 -0.04052452 |
| 34830 | | Axis point 1440.38116124 0.00000000 -1000.87336171 |
| 34831 | | Rotation angle (degrees) 10.80132904 |
| 34832 | | Shift along axis 127.93578107 |
| 34833 | | |
| 34834 | | |
| 34835 | | > fitmap #32.2 inMap #1 |
| 34836 | | |
| 34837 | | Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif B (#32.2) to map |
| 34838 | | postprocess_20231221.mrc (#1) using 1222 atoms |
| 34839 | | average map value = 0.004217, steps = 40 |
| 34840 | | shifted from previous position = 0.0531 |
| 34841 | | rotated from previous position = 0.0392 degrees |
| 34842 | | atoms outside contour = 617, contour level = 0.0036964 |
| 34843 | | |
| 34844 | | Position of 5mu7_Thermophila_beta_deltaCOPI.cif B (#32.2) relative to |
| 34845 | | postprocess_20231221.mrc (#1) coordinates: |
| 34846 | | Matrix rotation and translation |
| 34847 | | 0.98241386 0.00649415 0.18660341 201.04872379 |
| 34848 | | -0.00941781 0.99984633 0.01478552 155.90228349 |
| 34849 | | -0.18647871 -0.01628290 0.98232406 245.68872568 |
| 34850 | | Axis -0.08291291 0.99565165 -0.04246457 |
| 34851 | | Axis point 1441.33793611 0.00000000 -998.50320932 |
| 34852 | | Rotation angle (degrees) 10.79850883 |
| 34853 | | Shift along axis 128.12176560 |
| 34854 | | |
| 34855 | | |
| 34856 | | > fitmap #32.2 inMap #1 |
| 34857 | | |
| 34858 | | Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif B (#32.2) to map |
| 34859 | | postprocess_20231221.mrc (#1) using 1222 atoms |
| 34860 | | average map value = 0.004217, steps = 40 |
| 34861 | | shifted from previous position = 0.0198 |
| 34862 | | rotated from previous position = 0.0275 degrees |
| 34863 | | atoms outside contour = 616, contour level = 0.0036964 |
| 34864 | | |
| 34865 | | Position of 5mu7_Thermophila_beta_deltaCOPI.cif B (#32.2) relative to |
| 34866 | | postprocess_20231221.mrc (#1) coordinates: |
| 34867 | | Matrix rotation and translation |
| 34868 | | 0.98235946 0.00617017 0.18690057 201.08453605 |
| 34869 | | -0.00913930 0.99984529 0.01502867 155.89330045 |
| 34870 | | -0.18677893 -0.01647170 0.98226387 245.71224507 |
| 34871 | | Axis -0.08392998 0.99563642 -0.04079075 |
| 34872 | | Axis point 1438.29185698 0.00000000 -997.75841929 |
| 34873 | | Rotation angle (degrees) 10.81617490 |
| 34874 | | Shift along axis 128.31323939 |
| 34875 | | |
| 34876 | | |
| 34877 | | > select subtract #32.2 |
| 34878 | | |
| 34879 | | Nothing selected |
| 34880 | | |
| 34881 | | > select add #32.1 |
| 34882 | | |
| 34883 | | 2991 atoms, 3010 bonds, 400 residues, 1 model selected |
| 34884 | | |
| 34885 | | > view matrix models |
| 34886 | | > #32.1,0.99551,-0.087137,0.037019,318.16,0.079076,0.9803,0.18098,267.67,-0.05206,-0.17724,0.98279,362.86 |
| 34887 | | |
| 34888 | | > ui mousemode right "rotate selected models" |
| 34889 | | |
| 34890 | | > view matrix models |
| 34891 | | > #32.1,0.99092,-0.05475,0.1228,318,0.062046,0.99648,-0.056389,265.34,-0.11928,0.063496,0.99083,356.58 |
| 34892 | | |
| 34893 | | > fitmap #32.1 inMap #1 |
| 34894 | | |
| 34895 | | Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) to map |
| 34896 | | postprocess_20231221.mrc (#1) using 2991 atoms |
| 34897 | | average map value = 0.004241, steps = 84 |
| 34898 | | shifted from previous position = 2.25 |
| 34899 | | rotated from previous position = 14.6 degrees |
| 34900 | | atoms outside contour = 1592, contour level = 0.0036964 |
| 34901 | | |
| 34902 | | Position of 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) relative to |
| 34903 | | postprocess_20231221.mrc (#1) coordinates: |
| 34904 | | Matrix rotation and translation |
| 34905 | | 0.99530720 -0.08850785 0.03911444 204.53962622 |
| 34906 | | 0.07970003 0.97905488 0.18734845 155.90993657 |
| 34907 | | -0.05487699 -0.18335184 0.98151445 251.09966490 |
| 34908 | | Axis -0.88729237 0.22497388 0.40261520 |
| 34909 | | Axis point 0.00000000 1541.01835524 -714.32479979 |
| 34910 | | Rotation angle (degrees) 12.05755199 |
| 34911 | | Shift along axis -45.31424535 |
| 34912 | | |
| 34913 | | |
| 34914 | | > fitmap #32.1 inMap #1 |
| 34915 | | |
| 34916 | | Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) to map |
| 34917 | | postprocess_20231221.mrc (#1) using 2991 atoms |
| 34918 | | average map value = 0.00424, steps = 48 |
| 34919 | | shifted from previous position = 0.0448 |
| 34920 | | rotated from previous position = 0.0377 degrees |
| 34921 | | atoms outside contour = 1596, contour level = 0.0036964 |
| 34922 | | |
| 34923 | | Position of 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) relative to |
| 34924 | | postprocess_20231221.mrc (#1) coordinates: |
| 34925 | | Matrix rotation and translation |
| 34926 | | 0.99528348 -0.08879701 0.03906262 204.56589890 |
| 34927 | | 0.08002562 0.97913646 0.18678247 155.93880820 |
| 34928 | | -0.05483336 -0.18277550 0.98162438 251.08241743 |
| 34929 | | Axis -0.88622599 0.22516917 0.40484854 |
| 34930 | | Axis point 0.00000000 1544.34030617 -716.04620285 |
| 34931 | | Rotation angle (degrees) 12.03452034 |
| 34932 | | Shift along axis -44.52865349 |
| 34933 | | |
| 34934 | | |
| 34935 | | > fitmap #32.1 inMap #1 |
| 34936 | | |
| 34937 | | Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) to map |
| 34938 | | postprocess_20231221.mrc (#1) using 2991 atoms |
| 34939 | | average map value = 0.00424, steps = 40 |
| 34940 | | shifted from previous position = 0.0342 |
| 34941 | | rotated from previous position = 0.0314 degrees |
| 34942 | | atoms outside contour = 1594, contour level = 0.0036964 |
| 34943 | | |
| 34944 | | Position of 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) relative to |
| 34945 | | postprocess_20231221.mrc (#1) coordinates: |
| 34946 | | Matrix rotation and translation |
| 34947 | | 0.99532569 -0.08829616 0.03912245 204.54167069 |
| 34948 | | 0.07951145 0.97914249 0.18697037 155.91860289 |
| 34949 | | -0.05481522 -0.18298573 0.98158622 251.07444595 |
| 34950 | | Axis -0.88728134 0.22529470 0.40246008 |
| 34951 | | Axis point 0.00000000 1543.83636390 -716.29708101 |
| 34952 | | Rotation angle (degrees) 12.03313503 |
| 34953 | | Shift along axis -45.31093217 |
| 34954 | | |
| 34955 | | |
| 34956 | | > fitmap #32.1 inMap #1 |
| 34957 | | |
| 34958 | | Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) to map |
| 34959 | | postprocess_20231221.mrc (#1) using 2991 atoms |
| 34960 | | average map value = 0.004241, steps = 44 |
| 34961 | | shifted from previous position = 0.0371 |
| 34962 | | rotated from previous position = 0.0216 degrees |
| 34963 | | atoms outside contour = 1596, contour level = 0.0036964 |
| 34964 | | |
| 34965 | | Position of 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) relative to |
| 34966 | | postprocess_20231221.mrc (#1) coordinates: |
| 34967 | | Matrix rotation and translation |
| 34968 | | 0.99529199 -0.08866635 0.03914245 204.54651877 |
| 34969 | | 0.07987446 0.97912152 0.18692543 155.93624436 |
| 34970 | | -0.05489921 -0.18291890 0.98159399 251.10027350 |
| 34971 | | Axis -0.88654561 0.22542516 0.40400542 |
| 34972 | | Axis point 0.00000000 1543.58380884 -715.76424350 |
| 34973 | | Rotation angle (degrees) 12.03957768 |
| 34974 | | Shift along axis -44.74199257 |
| 34975 | | |
| 34976 | | |
| 34977 | | > show #!1 models |
| 34978 | | |
| 34979 | | > select subtract #32.1 |
| 34980 | | |
| 34981 | | Nothing selected |
| 34982 | | |
| 34983 | | > hide #32.1 models |
| 34984 | | |
| 34985 | | > show #32.1 models |
| 34986 | | |
| 34987 | | > hide #32.1 models |
| 34988 | | |
| 34989 | | > hide #32.2 models |
| 34990 | | |
| 34991 | | > hide #!32 models |
| 34992 | | |
| 34993 | | > show #32.1 models |
| 34994 | | |
| 34995 | | > show #32.2 models |
| 34996 | | |
| 34997 | | > hide #!32 models |
| 34998 | | |
| 34999 | | > show #!32 models |
| 35000 | | |
| 35001 | | > hide #!32 models |
| 35002 | | |
| 35003 | | > show #!32 models |
| 35004 | | |
| 35005 | | > hide #!32 models |
| 35006 | | |
| 35007 | | > hide #32.1 models |
| 35008 | | |
| 35009 | | > show #32.1 models |
| 35010 | | |
| 35011 | | > hide #!32 models |
| 35012 | | |
| 35013 | | > show #!32 models |
| 35014 | | |
| 35015 | | > hide #4 models |
| 35016 | | |
| 35017 | | > hide #8 models |
| 35018 | | |
| 35019 | | > ui mousemode right zoom |
| 35020 | | |
| 35021 | | > show #!31 models |
| 35022 | | |
| 35023 | | > show #!30 models |
| 35024 | | |
| 35025 | | > show #29 models |
| 35026 | | |
| 35027 | | > hide #29 models |
| 35028 | | |
| 35029 | | > show #!28 models |
| 35030 | | |
| 35031 | | > hide #!28 models |
| 35032 | | |
| 35033 | | > show #!27 models |
| 35034 | | |
| 35035 | | > show #27.1 models |
| 35036 | | |
| 35037 | | > show #27.2 models |
| 35038 | | |
| 35039 | | > show #!26 models |
| 35040 | | |
| 35041 | | > show #24 models |
| 35042 | | |
| 35043 | | > hide #!1 models |
| 35044 | | |
| 35045 | | > show #!1 models |
| 35046 | | |
| 35047 | | > hide #!1 models |
| 35048 | | |
| 35049 | | > show #!1 models |
| 35050 | | |
| 35051 | | > show #!25 models |
| 35052 | | |
| 35053 | | > show #25.1 models |
| 35054 | | |
| 35055 | | > show #!25.2 models |
| 35056 | | |
| 35057 | | > show #25.3 models |
| 35058 | | |
| 35059 | | > show #!25.4 models |
| 35060 | | |
| 35061 | | > show #25.5 models |
| 35062 | | |
| 35063 | | > show #!25.6 models |
| 35064 | | |
| 35065 | | > show #!25.7 models |
| 35066 | | |
| 35067 | | > show #25.8 models |
| 35068 | | |
| 35069 | | > show #25.9 models |
| 35070 | | |
| 35071 | | > show #25.10 models |
| 35072 | | |
| 35073 | | > show #25.11 models |
| 35074 | | |
| 35075 | | > hide #!1 models |
| 35076 | | |
| 35077 | | > hide #25.9 models |
| 35078 | | |
| 35079 | | > show #25.9 models |
| 35080 | | |
| 35081 | | > hide #25.10 models |
| 35082 | | |
| 35083 | | > show #25.10 models |
| 35084 | | |
| 35085 | | > hide #25.10 models |
| 35086 | | |
| 35087 | | > show #25.10 models |
| 35088 | | |
| 35089 | | > hide #25.10 models |
| 35090 | | |
| 35091 | | > hide #25.11 models |
| 35092 | | |
| 35093 | | > show #25.11 models |
| 35094 | | |
| 35095 | | > hide #25.11 models |
| 35096 | | |
| 35097 | | > show #25.11 models |
| 35098 | | |
| 35099 | | > hide #25.11 models |
| 35100 | | |
| 35101 | | > show #25.11 models |
| 35102 | | |
| 35103 | | > hide #!25.7 models |
| 35104 | | |
| 35105 | | > hide #!25.6 models |
| 35106 | | |
| 35107 | | > hide #25.3 models |
| 35108 | | |
| 35109 | | > show #25.3 models |
| 35110 | | |
| 35111 | | > hide #25.3 models |
| 35112 | | |
| 35113 | | > show #25.3 models |
| 35114 | | |
| 35115 | | > fitmap #25.3 inMap #1 |
| 35116 | | |
| 35117 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map |
| 35118 | | postprocess_20231221.mrc (#1) using 3371 atoms |
| 35119 | | average map value = 0.004368, steps = 44 |
| 35120 | | shifted from previous position = 0.00844 |
| 35121 | | rotated from previous position = 0.00913 degrees |
| 35122 | | atoms outside contour = 1375, contour level = 0.0036964 |
| 35123 | | |
| 35124 | | Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to |
| 35125 | | postprocess_20231221.mrc (#1) coordinates: |
| 35126 | | Matrix rotation and translation |
| 35127 | | -0.47525408 0.87647726 -0.07694909 158.53420343 |
| 35128 | | -0.87868101 -0.47730886 -0.00979377 369.87324190 |
| 35129 | | -0.04531250 0.06295917 0.99698691 112.96016999 |
| 35130 | | Axis 0.04140865 -0.01800653 -0.99898002 |
| 35131 | | Axis point 191.05150899 135.35845305 0.00000000 |
| 35132 | | Rotation angle (degrees) 118.54103318 |
| 35133 | | Shift along axis -112.94040061 |
| 35134 | | |
| 35135 | | |
| 35136 | | > fitmap #25.3 inMap #1 |
| 35137 | | |
| 35138 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map |
| 35139 | | postprocess_20231221.mrc (#1) using 3371 atoms |
| 35140 | | average map value = 0.004368, steps = 48 |
| 35141 | | shifted from previous position = 0.0471 |
| 35142 | | rotated from previous position = 0.0276 degrees |
| 35143 | | atoms outside contour = 1374, contour level = 0.0036964 |
| 35144 | | |
| 35145 | | Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to |
| 35146 | | postprocess_20231221.mrc (#1) coordinates: |
| 35147 | | Matrix rotation and translation |
| 35148 | | -0.47516672 0.87649025 -0.07733961 158.59310079 |
| 35149 | | -0.87873077 -0.47722253 -0.00953295 369.80611039 |
| 35150 | | -0.04526374 0.06343095 0.99695922 112.92634766 |
| 35151 | | Axis 0.04152685 -0.01825574 -0.99897059 |
| 35152 | | Axis point 191.06980499 135.28411630 0.00000000 |
| 35153 | | Rotation angle (degrees) 118.53627210 |
| 35154 | | Shift along axis -112.97531167 |
| 35155 | | |
| 35156 | | |
| 35157 | | > hide #25.3 models |
| 35158 | | |
| 35159 | | > hide #25.1 models |
| 35160 | | |
| 35161 | | > show #25.1 models |
| 35162 | | |
| 35163 | | > hide #25.1 models |
| 35164 | | |
| 35165 | | > show #25.1 models |
| 35166 | | |
| 35167 | | > hide #!25.2 models |
| 35168 | | |
| 35169 | | > show #!25.2 models |
| 35170 | | |
| 35171 | | > hide #!25.2 models |
| 35172 | | |
| 35173 | | > show #!25.2 models |
| 35174 | | |
| 35175 | | > hide #!25.2 models |
| 35176 | | |
| 35177 | | > hide #!25.4 models |
| 35178 | | |
| 35179 | | > show #!25.4 models |
| 35180 | | |
| 35181 | | > hide #!25.4 models |
| 35182 | | |
| 35183 | | > show #!25.4 models |
| 35184 | | |
| 35185 | | > show #!1 models |
| 35186 | | |
| 35187 | | > show #!9 models |
| 35188 | | |
| 35189 | | > hide #!9 models |
| 35190 | | |
| 35191 | | > show #!25.6 models |
| 35192 | | |
| 35193 | | > hide #!25.6 models |
| 35194 | | |
| 35195 | | > show #!25.7 models |
| 35196 | | |
| 35197 | | > show #!9 models |
| 35198 | | |
| 35199 | | > hide #25.1 models |
| 35200 | | |
| 35201 | | > show #25.1 models |
| 35202 | | |
| 35203 | | > hide #25.1 models |
| 35204 | | |
| 35205 | | > show #25.1 models |
| 35206 | | |
| 35207 | | > hide #!9 models |
| 35208 | | |
| 35209 | | > show #!9 models |
| 35210 | | |
| 35211 | | > hide #!25.7 models |
| 35212 | | |
| 35213 | | > show #!25.7 models |
| 35214 | | |
| 35215 | | > hide #25.9 models |
| 35216 | | |
| 35217 | | > show #25.9 models |
| 35218 | | |
| 35219 | | > show #25.10 models |
| 35220 | | |
| 35221 | | > hide #25.10 models |
| 35222 | | |
| 35223 | | > show #25.10 models |
| 35224 | | |
| 35225 | | > hide #25.10 models |
| 35226 | | |
| 35227 | | > hide #!26.1 models |
| 35228 | | |
| 35229 | | > show #!26.1 models |
| 35230 | | |
| 35231 | | > hide #!26.2 models |
| 35232 | | |
| 35233 | | > show #!26.2 models |
| 35234 | | |
| 35235 | | > hide #!26.2 models |
| 35236 | | |
| 35237 | | > show #!26.2 models |
| 35238 | | |
| 35239 | | > hide #!26.2 models |
| 35240 | | |
| 35241 | | > show #!26.2 models |
| 35242 | | |
| 35243 | | > hide #!9 models |
| 35244 | | |
| 35245 | | > show #!9 models |
| 35246 | | |
| 35247 | | > hide #!9 models |
| 35248 | | |
| 35249 | | > show #!9 models |
| 35250 | | |
| 35251 | | > show #!25.6 models |
| 35252 | | |
| 35253 | | > hide #!25.6 models |
| 35254 | | |
| 35255 | | > show #!25.6 models |
| 35256 | | |
| 35257 | | > hide #!25.6 models |
| 35258 | | |
| 35259 | | > show #!25.6 models |
| 35260 | | |
| 35261 | | > hide #!25.6 models |
| 35262 | | |
| 35263 | | > hide #!26.2 models |
| 35264 | | |
| 35265 | | > show #!26.2 models |
| 35266 | | |
| 35267 | | > hide #!26.2 models |
| 35268 | | |
| 35269 | | > show #!26.2 models |
| 35270 | | |
| 35271 | | > hide #!26.2 models |
| 35272 | | |
| 35273 | | > hide #26.3 models |
| 35274 | | |
| 35275 | | > show #26.3 models |
| 35276 | | |
| 35277 | | > hide #26.3 models |
| 35278 | | |
| 35279 | | > show #26.3 models |
| 35280 | | |
| 35281 | | > hide #26.3 models |
| 35282 | | |
| 35283 | | > hide #25.11 models |
| 35284 | | |
| 35285 | | > show #25.11 models |
| 35286 | | |
| 35287 | | > hide #25.11 models |
| 35288 | | |
| 35289 | | > show #25.11 models |
| 35290 | | |
| 35291 | | > hide #25.11 models |
| 35292 | | |
| 35293 | | > show #25.11 models |
| 35294 | | |
| 35295 | | > hide #25.8 models |
| 35296 | | |
| 35297 | | > show #25.8 models |
| 35298 | | |
| 35299 | | > show #!25.2 models |
| 35300 | | |
| 35301 | | > hide #!25.2 models |
| 35302 | | |
| 35303 | | > show #!25.2 models |
| 35304 | | |
| 35305 | | > hide #!25.2 models |
| 35306 | | |
| 35307 | | > show #!25.2 models |
| 35308 | | |
| 35309 | | > show #4 models |
| 35310 | | |
| 35311 | | > hide #4 models |
| 35312 | | |
| 35313 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 35314 | | > dataset/Chimera sessions/20240212_leaf_fitting_v10.cxs" |
| 35315 | | |
| 35316 | | ——— End of log from Thu Feb 15 12:14:52 2024 ——— |
| 35317 | | |
| 35318 | | opened ChimeraX session |
| 35319 | | |
| 35320 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 35321 | | > dataset/Structure files/relion_locres_filtered_20240325_GT.mrc" |
| 35322 | | |
| 35323 | | Opened relion_locres_filtered_20240325_GT.mrc as #33, grid size 292,292,292, |
| 35324 | | pixel 1.71, shown at level 0.00475, step 2, values float32 |
| 35325 | | |
| 35326 | | > hide #!33 models |
| 35327 | | |
| 35328 | | > show #!33 models |
| 35329 | | |
| 35330 | | > volume #33 step 1 |
| 35331 | | |
| 35332 | | > select add #33 |
| 35333 | | |
| 35334 | | 2 models selected |
| 35335 | | |
| 35336 | | > ui mousemode right "translate selected models" |
| 35337 | | |
| 35338 | | > view matrix models #33,1,0,0,72.57,0,1,0,86.032,0,0,1,68.458 |
| 35339 | | |
| 35340 | | > view matrix models #33,1,0,0,30.335,0,1,0,73.477,0,0,1,74.235 |
| 35341 | | |
| 35342 | | > volume #33 level 0.01231 |
| 35343 | | |
| 35344 | | > view matrix models #33,1,0,0,71.154,0,1,0,73.217,0,0,1,71.076 |
| 35345 | | |
| 35346 | | > view matrix models #33,1,0,0,72.64,0,1,0,67.127,0,0,1,85.835 |
| 35347 | | |
| 35348 | | > view matrix models #33,1,0,0,78.575,0,1,0,62.017,0,0,1,83.222 |
| 35349 | | |
| 35350 | | > volume #33 level 0.01173 |
| 35351 | | |
| 35352 | | > ui tool show "Fit in Map" |
| 35353 | | |
| 35354 | | > fitmap #33 inMap #1 |
| 35355 | | |
| 35356 | | Fit map relion_locres_filtered_20240325_GT.mrc in map postprocess_20231221.mrc |
| 35357 | | using 44037 points |
| 35358 | | correlation = 0.6237, correlation about mean = 0.1262, overlap = 2.804 |
| 35359 | | steps = 92, shift = 12.9, angle = 6.6 degrees |
| 35360 | | |
| 35361 | | Position of relion_locres_filtered_20240325_GT.mrc (#33) relative to |
| 35362 | | postprocess_20231221.mrc (#1) coordinates: |
| 35363 | | Matrix rotation and translation |
| 35364 | | 0.99949388 -0.02731098 0.01631250 -37.00560756 |
| 35365 | | 0.02888458 0.99398480 -0.10564043 -16.91209365 |
| 35366 | | -0.01332924 0.10605815 0.99427059 -54.83653713 |
| 35367 | | Axis 0.95779583 0.13410923 0.25424764 |
| 35368 | | Axis point 0.00000000 386.91878756 -116.54834210 |
| 35369 | | Rotation angle (degrees) 6.34491271 |
| 35370 | | Shift along axis -51.65394478 |
| 35371 | | |
| 35372 | | |
| 35373 | | > select subtract #33 |
| 35374 | | |
| 35375 | | Nothing selected |
| 35376 | | |
| 35377 | | > hide #!1 models |
| 35378 | | |
| 35379 | | > show #!1 models |
| 35380 | | |
| 35381 | | > hide #!1 models |
| 35382 | | |
| 35383 | | > select add #33 |
| 35384 | | |
| 35385 | | 2 models selected |
| 35386 | | |
| 35387 | | > select subtract #33 |
| 35388 | | |
| 35389 | | Nothing selected |
| 35390 | | |
| 35391 | | > hide #!33 models |
| 35392 | | |
| 35393 | | > show #!33 models |
| 35394 | | |
| 35395 | | > show #!1 models |
| 35396 | | |
| 35397 | | > hide #!33 models |
| 35398 | | |
| 35399 | | > hide #!1 models |
| 35400 | | |
| 35401 | | > show #!33 models |
| 35402 | | |
| 35403 | | > select add #33 |
| 35404 | | |
| 35405 | | 2 models selected |
| 35406 | | |
| 35407 | | > view matrix models |
| 35408 | | > #33,0.99957,-0.025838,0.01358,74.395,0.027189,0.99344,-0.1111,94.822,-0.01062,0.11142,0.99372,55.81 |
| 35409 | | |
| 35410 | | > view matrix models |
| 35411 | | > #33,0.99957,-0.025838,0.01358,73.428,0.027189,0.99344,-0.1111,96.48,-0.01062,0.11142,0.99372,62.53 |
| 35412 | | |
| 35413 | | > view matrix models |
| 35414 | | > #33,0.99957,-0.025838,0.01358,73.648,0.027189,0.99344,-0.1111,94.024,-0.01062,0.11142,0.99372,62.484 |
| 35415 | | |
| 35416 | | > view matrix models |
| 35417 | | > #33,0.99957,-0.025838,0.01358,69.414,0.027189,0.99344,-0.1111,91.313,-0.01062,0.11142,0.99372,57.683 |
| 35418 | | |
| 35419 | | > view matrix models |
| 35420 | | > #33,0.99957,-0.025838,0.01358,63.655,0.027189,0.99344,-0.1111,102,-0.01062,0.11142,0.99372,53.367 |
| 35421 | | |
| 35422 | | > fitmap #33 inMap #1 |
| 35423 | | |
| 35424 | | Fit map relion_locres_filtered_20240325_GT.mrc in map postprocess_20231221.mrc |
| 35425 | | using 44037 points |
| 35426 | | correlation = 0.857, correlation about mean = 0.4514, overlap = 5.569 |
| 35427 | | steps = 76, shift = 3.2, angle = 5.89 degrees |
| 35428 | | |
| 35429 | | Position of relion_locres_filtered_20240325_GT.mrc (#33) relative to |
| 35430 | | postprocess_20231221.mrc (#1) coordinates: |
| 35431 | | Matrix rotation and translation |
| 35432 | | 0.99986659 -0.01403628 0.00835329 -48.07140361 |
| 35433 | | 0.01407399 0.99989095 -0.00447277 -38.51251840 |
| 35434 | | -0.00828960 0.00458974 0.99995511 -34.90096404 |
| 35435 | | Axis 0.26732008 0.49092094 0.82917827 |
| 35436 | | Axis point 601.63878323 -2274.55915830 0.00000000 |
| 35437 | | Rotation angle (degrees) 0.97124921 |
| 35438 | | Shift along axis -60.69617408 |
| 35439 | | |
| 35440 | | |
| 35441 | | > select subtract #33 |
| 35442 | | |
| 35443 | | Nothing selected |
| 35444 | | |
| 35445 | | > volume #33 level 0.007732 |
| 35446 | | |
| 35447 | | > color #33 #b2b2b2b3 models |
| 35448 | | |
| 35449 | | > hide #!9 models |
| 35450 | | |
| 35451 | | > show #!9 models |
| 35452 | | |
| 35453 | | > fitmap #9 inMap #33 |
| 35454 | | |
| 35455 | | Fit molecule CopG_Q9QZE5 (#9) to map relion_locres_filtered_20240325_GT.mrc |
| 35456 | | (#33) using 6673 atoms |
| 35457 | | average map value = 0.008961, steps = 52 |
| 35458 | | shifted from previous position = 0.988 |
| 35459 | | rotated from previous position = 0.57 degrees |
| 35460 | | atoms outside contour = 4166, contour level = 0.0077316 |
| 35461 | | |
| 35462 | | Position of CopG_Q9QZE5 (#9) relative to |
| 35463 | | relion_locres_filtered_20240325_GT.mrc (#33) coordinates: |
| 35464 | | Matrix rotation and translation |
| 35465 | | 0.49613377 -0.51960793 -0.69559965 274.31858527 |
| 35466 | | 0.53785070 -0.44499499 0.71602799 319.09443722 |
| 35467 | | -0.68159218 -0.72937443 0.05869444 294.85363127 |
| 35468 | | Axis -0.80704633 -0.00782113 0.59043633 |
| 35469 | | Axis point -0.00000000 282.70437624 125.41603975 |
| 35470 | | Rotation angle (degrees) 116.42867423 |
| 35471 | | Shift along axis -49.79118899 |
| 35472 | | |
| 35473 | | |
| 35474 | | > fitmap #9 inMap #33 |
| 35475 | | |
| 35476 | | Fit molecule CopG_Q9QZE5 (#9) to map relion_locres_filtered_20240325_GT.mrc |
| 35477 | | (#33) using 6673 atoms |
| 35478 | | average map value = 0.008961, steps = 64 |
| 35479 | | shifted from previous position = 0.0124 |
| 35480 | | rotated from previous position = 0.00857 degrees |
| 35481 | | atoms outside contour = 4169, contour level = 0.0077316 |
| 35482 | | |
| 35483 | | Position of CopG_Q9QZE5 (#9) relative to |
| 35484 | | relion_locres_filtered_20240325_GT.mrc (#33) coordinates: |
| 35485 | | Matrix rotation and translation |
| 35486 | | 0.49623907 -0.51951431 -0.69559447 274.30741330 |
| 35487 | | 0.53787534 -0.44494899 0.71603807 319.08787875 |
| 35488 | | -0.68149608 -0.72946917 0.05863287 294.85903889 |
| 35489 | | Axis -0.80708476 -0.00787170 0.59038312 |
| 35490 | | Axis point 0.00000000 282.70154029 125.40339295 |
| 35491 | | Rotation angle (degrees) 116.42580377 |
| 35492 | | Shift along axis -49.82129739 |
| 35493 | | |
| 35494 | | |
| 35495 | | > fitmap #9 inMap #33 |
| 35496 | | |
| 35497 | | Fit molecule CopG_Q9QZE5 (#9) to map relion_locres_filtered_20240325_GT.mrc |
| 35498 | | (#33) using 6673 atoms |
| 35499 | | average map value = 0.008961, steps = 80 |
| 35500 | | shifted from previous position = 0.00724 |
| 35501 | | rotated from previous position = 0.0138 degrees |
| 35502 | | atoms outside contour = 4169, contour level = 0.0077316 |
| 35503 | | |
| 35504 | | Position of CopG_Q9QZE5 (#9) relative to |
| 35505 | | relion_locres_filtered_20240325_GT.mrc (#33) coordinates: |
| 35506 | | Matrix rotation and translation |
| 35507 | | 0.49616295 -0.51945034 -0.69569653 274.30452132 |
| 35508 | | 0.53781312 -0.44516526 0.71595037 319.08560977 |
| 35509 | | -0.68160060 -0.72938277 0.05849270 294.84858065 |
| 35510 | | Axis -0.80708445 -0.00787127 0.59038354 |
| 35511 | | Axis point -0.00000000 282.66374601 125.43104086 |
| 35512 | | Rotation angle (degrees) 116.43964221 |
| 35513 | | Shift along axis -49.82477444 |
| 35514 | | |
| 35515 | | |
| 35516 | | > hide #24 models |
| 35517 | | |
| 35518 | | > show #24 models |
| 35519 | | |
| 35520 | | > hide #24 models |
| 35521 | | |
| 35522 | | > show #24 models |
| 35523 | | |
| 35524 | | > fitmap #24 inMap #33 |
| 35525 | | |
| 35526 | | Fit molecule 3kn1_Golph3_xtal.cif (#24) to map |
| 35527 | | relion_locres_filtered_20240325_GT.mrc (#33) using 1934 atoms |
| 35528 | | average map value = 0.008805, steps = 48 |
| 35529 | | shifted from previous position = 0.97 |
| 35530 | | rotated from previous position = 1.19 degrees |
| 35531 | | atoms outside contour = 905, contour level = 0.0077316 |
| 35532 | | |
| 35533 | | Position of 3kn1_Golph3_xtal.cif (#24) relative to |
| 35534 | | relion_locres_filtered_20240325_GT.mrc (#33) coordinates: |
| 35535 | | Matrix rotation and translation |
| 35536 | | 0.23315837 0.94986433 -0.20831449 197.31839591 |
| 35537 | | 0.00055264 -0.21434801 -0.97675720 258.17011954 |
| 35538 | | -0.97243862 0.22762399 -0.05050197 197.45063390 |
| 35539 | | Axis 0.70293409 0.44597915 -0.55406341 |
| 35540 | | Axis point 0.00000000 -45.05482516 254.37750939 |
| 35541 | | Rotation angle (degrees) 121.05400663 |
| 35542 | | Shift along axis 144.44014638 |
| 35543 | | |
| 35544 | | |
| 35545 | | > select add #24 |
| 35546 | | |
| 35547 | | 1934 atoms, 1950 bonds, 254 residues, 1 model selected |
| 35548 | | |
| 35549 | | > view matrix models |
| 35550 | | > #24,0.22751,0.95373,-0.19658,261.64,0.013108,-0.20485,-0.9787,333.54,-0.97369,0.22008,-0.059107,273.86 |
| 35551 | | |
| 35552 | | > ui mousemode right "rotate selected models" |
| 35553 | | |
| 35554 | | > view matrix models |
| 35555 | | > #24,0.20396,0.93399,-0.29337,260.27,-0.15499,-0.26508,-0.95169,335.09,-0.96663,0.23958,0.090695,276.18 |
| 35556 | | |
| 35557 | | > ui mousemode right "translate selected models" |
| 35558 | | |
| 35559 | | > view matrix models |
| 35560 | | > #24,0.20396,0.93399,-0.29337,258.7,-0.15499,-0.26508,-0.95169,335.39,-0.96663,0.23958,0.090695,278.18 |
| 35561 | | |
| 35562 | | > fitmap #24 inMap #33 |
| 35563 | | |
| 35564 | | Fit molecule 3kn1_Golph3_xtal.cif (#24) to map |
| 35565 | | relion_locres_filtered_20240325_GT.mrc (#33) using 1934 atoms |
| 35566 | | average map value = 0.008805, steps = 72 |
| 35567 | | shifted from previous position = 1.23 |
| 35568 | | rotated from previous position = 10.4 degrees |
| 35569 | | atoms outside contour = 903, contour level = 0.0077316 |
| 35570 | | |
| 35571 | | Position of 3kn1_Golph3_xtal.cif (#24) relative to |
| 35572 | | relion_locres_filtered_20240325_GT.mrc (#33) coordinates: |
| 35573 | | Matrix rotation and translation |
| 35574 | | 0.23306458 0.94996117 -0.20797758 197.32356452 |
| 35575 | | 0.00057448 -0.21400168 -0.97683312 258.15005036 |
| 35576 | | -0.97246109 0.22754572 -0.05042194 197.45698254 |
| 35577 | | Axis 0.70285059 0.44613677 -0.55404244 |
| 35578 | | Axis point 0.00000000 -45.14027322 254.39519192 |
| 35579 | | Rotation angle (degrees) 121.04288590 |
| 35580 | | Shift along axis 144.45966411 |
| 35581 | | |
| 35582 | | |
| 35583 | | > fitmap #24 inMap #33 |
| 35584 | | |
| 35585 | | Fit molecule 3kn1_Golph3_xtal.cif (#24) to map |
| 35586 | | relion_locres_filtered_20240325_GT.mrc (#33) using 1934 atoms |
| 35587 | | average map value = 0.008805, steps = 44 |
| 35588 | | shifted from previous position = 0.0314 |
| 35589 | | rotated from previous position = 0.0236 degrees |
| 35590 | | atoms outside contour = 902, contour level = 0.0077316 |
| 35591 | | |
| 35592 | | Position of 3kn1_Golph3_xtal.cif (#24) relative to |
| 35593 | | relion_locres_filtered_20240325_GT.mrc (#33) coordinates: |
| 35594 | | Matrix rotation and translation |
| 35595 | | 0.23331409 0.94994298 -0.20778080 197.36153623 |
| 35596 | | 0.00087375 -0.21388272 -0.97685895 258.14539493 |
| 35597 | | -0.97240103 0.22773341 -0.05073187 197.45390626 |
| 35598 | | Axis 0.70296074 0.44620738 -0.55384579 |
| 35599 | | Axis point 0.00000000 -45.15246279 254.33489264 |
| 35600 | | Rotation angle (degrees) 121.04092825 |
| 35601 | | Shift along axis 144.56477865 |
| 35602 | | |
| 35603 | | |
| 35604 | | > select subtract #24 |
| 35605 | | |
| 35606 | | Nothing selected |
| 35607 | | |
| 35608 | | > volume #33 level 0.008296 |
| 35609 | | |
| 35610 | | > hide #32.2 models |
| 35611 | | |
| 35612 | | > show #32.2 models |
| 35613 | | |
| 35614 | | > hide #32.2 models |
| 35615 | | |
| 35616 | | > show #32.2 models |
| 35617 | | |
| 35618 | | > hide #32.2 models |
| 35619 | | |
| 35620 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 35621 | | > dataset/Structure files/relion_locres_filtered_20240326_GT.mrc" |
| 35622 | | |
| 35623 | | Opened relion_locres_filtered_20240326_GT.mrc as #34, grid size 292,292,292, |
| 35624 | | pixel 1.71, shown at level 0.00473, step 2, values float32 |
| 35625 | | |
| 35626 | | > color #34 silver models |
| 35627 | | |
| 35628 | | > color #34 #c0c0c0c3 models |
| 35629 | | |
| 35630 | | > color #34 #c0c0c0b0 models |
| 35631 | | |
| 35632 | | > color #34 #c0c0c0b6 models |
| 35633 | | |
| 35634 | | > color #34 #c0c0c0b5 models |
| 35635 | | |
| 35636 | | > volume #34 step 1 |
| 35637 | | |
| 35638 | | > volume #34 level 0.006879 |
| 35639 | | |
| 35640 | | > select add #34 |
| 35641 | | |
| 35642 | | 2 models selected |
| 35643 | | |
| 35644 | | > view matrix models #34,1,0,0,76.713,0,1,0,44.244,0,0,1,90.944 |
| 35645 | | |
| 35646 | | > view matrix models #34,1,0,0,68.467,0,1,0,67.193,0,0,1,95.122 |
| 35647 | | |
| 35648 | | > view matrix models #34,1,0,0,61.165,0,1,0,76.648,0,0,1,88.225 |
| 35649 | | |
| 35650 | | > view matrix models #34,1,0,0,60.385,0,1,0,81.766,0,0,1,79.991 |
| 35651 | | |
| 35652 | | > fitmap #34 inMap #33 |
| 35653 | | |
| 35654 | | Fit map relion_locres_filtered_20240326_GT.mrc in map |
| 35655 | | relion_locres_filtered_20240325_GT.mrc using 81080 points |
| 35656 | | correlation = 0.4928, correlation about mean = 0.147, overlap = 7.58 |
| 35657 | | steps = 176, shift = 6.83, angle = 7.04 degrees |
| 35658 | | |
| 35659 | | Position of relion_locres_filtered_20240326_GT.mrc (#34) relative to |
| 35660 | | relion_locres_filtered_20240325_GT.mrc (#33) coordinates: |
| 35661 | | Matrix rotation and translation |
| 35662 | | 0.99429183 -0.08031793 0.07023384 6.18459749 |
| 35663 | | 0.08142673 0.99659370 -0.01306464 -10.59006941 |
| 35664 | | -0.06894528 0.01870897 0.99744500 19.92687933 |
| 35665 | | Axis 0.14728054 0.64513834 0.74973660 |
| 35666 | | Axis point 203.43567918 46.00553043 0.00000000 |
| 35667 | | Rotation angle (degrees) 6.19240989 |
| 35668 | | Shift along axis 9.01872173 |
| 35669 | | |
| 35670 | | |
| 35671 | | > select subtract #34 |
| 35672 | | |
| 35673 | | Nothing selected |
| 35674 | | |
| 35675 | | > hide #!34 models |
| 35676 | | |
| 35677 | | > show #!34 models |
| 35678 | | |
| 35679 | | > hide #!34 models |
| 35680 | | |
| 35681 | | > show #!34 models |
| 35682 | | |
| 35683 | | > hide #!34 models |
| 35684 | | |
| 35685 | | > show #!34 models |
| 35686 | | |
| 35687 | | > select add #34 |
| 35688 | | |
| 35689 | | 2 models selected |
| 35690 | | |
| 35691 | | > view matrix models |
| 35692 | | > #34,0.9928,-0.092454,0.076157,67.203,0.094382,0.99529,-0.02212,64.594,-0.073753,0.029149,0.99685,82.392 |
| 35693 | | |
| 35694 | | > view matrix models |
| 35695 | | > #34,0.9928,-0.092454,0.076157,69.297,0.094382,0.99529,-0.02212,59.891,-0.073753,0.029149,0.99685,86.477 |
| 35696 | | |
| 35697 | | > fitmap #34 inMap #33 |
| 35698 | | |
| 35699 | | Fit map relion_locres_filtered_20240326_GT.mrc in map |
| 35700 | | relion_locres_filtered_20240325_GT.mrc using 81080 points |
| 35701 | | correlation = 0.9993, correlation about mean = 0.999, overlap = 24.37 |
| 35702 | | steps = 88, shift = 2.2, angle = 6.19 degrees |
| 35703 | | |
| 35704 | | Position of relion_locres_filtered_20240326_GT.mrc (#34) relative to |
| 35705 | | relion_locres_filtered_20240325_GT.mrc (#33) coordinates: |
| 35706 | | Matrix rotation and translation |
| 35707 | | 1.00000000 -0.00007715 0.00001183 0.00492983 |
| 35708 | | 0.00007715 1.00000000 -0.00005101 -0.01559630 |
| 35709 | | -0.00001183 0.00005101 1.00000000 -0.00690254 |
| 35710 | | Axis 0.54709301 0.12689970 0.82739694 |
| 35711 | | Axis point 193.95045006 99.30213635 0.00000000 |
| 35712 | | Rotation angle (degrees) 0.00534241 |
| 35713 | | Shift along axis -0.00499324 |
| 35714 | | |
| 35715 | | |
| 35716 | | > hide #!33 models |
| 35717 | | |
| 35718 | | > select subtract #34 |
| 35719 | | |
| 35720 | | Nothing selected |
| 35721 | | |
| 35722 | | > volume #34 level 0.007468 |
| 35723 | | |
| 35724 | | > fitmap #24 inMap #34 |
| 35725 | | |
| 35726 | | Fit molecule 3kn1_Golph3_xtal.cif (#24) to map |
| 35727 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1934 atoms |
| 35728 | | average map value = 0.008451, steps = 44 |
| 35729 | | shifted from previous position = 0.0262 |
| 35730 | | rotated from previous position = 0.0727 degrees |
| 35731 | | atoms outside contour = 894, contour level = 0.0074676 |
| 35732 | | |
| 35733 | | Position of 3kn1_Golph3_xtal.cif (#24) relative to |
| 35734 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 35735 | | Matrix rotation and translation |
| 35736 | | 0.23425930 0.94987010 -0.20704919 197.40956475 |
| 35737 | | 0.00070050 -0.21314028 -0.97702136 258.09351163 |
| 35738 | | -0.97217390 0.22873130 -0.05059548 197.38429803 |
| 35739 | | Axis 0.70318792 0.44621627 -0.55355018 |
| 35740 | | Axis point 0.00000000 -45.26642650 254.27476290 |
| 35741 | | Rotation angle (degrees) 120.97995955 |
| 35742 | | Shift along axis 144.71943025 |
| 35743 | | |
| 35744 | | |
| 35745 | | > fitmap #24 inMap #34 |
| 35746 | | |
| 35747 | | Fit molecule 3kn1_Golph3_xtal.cif (#24) to map |
| 35748 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1934 atoms |
| 35749 | | average map value = 0.008451, steps = 44 |
| 35750 | | shifted from previous position = 0.00229 |
| 35751 | | rotated from previous position = 0.0546 degrees |
| 35752 | | atoms outside contour = 898, contour level = 0.0074676 |
| 35753 | | |
| 35754 | | Position of 3kn1_Golph3_xtal.cif (#24) relative to |
| 35755 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 35756 | | Matrix rotation and translation |
| 35757 | | 0.23353126 0.95014780 -0.20659697 197.39334641 |
| 35758 | | 0.00051751 -0.21259339 -0.97714061 258.06121856 |
| 35759 | | -0.97234916 0.22808596 -0.05013891 197.42485509 |
| 35760 | | Axis 0.70281335 0.44653916 -0.55376546 |
| 35761 | | Axis point 0.00000000 -45.44733566 254.39921330 |
| 35762 | | Rotation angle (degrees) 120.97075702 |
| 35763 | | Shift along axis 144.63805233 |
| 35764 | | |
| 35765 | | |
| 35766 | | > fitmap #9 inMap #34 |
| 35767 | | |
| 35768 | | Fit molecule CopG_Q9QZE5 (#9) to map relion_locres_filtered_20240326_GT.mrc |
| 35769 | | (#34) using 6673 atoms |
| 35770 | | average map value = 0.008518, steps = 48 |
| 35771 | | shifted from previous position = 0.0318 |
| 35772 | | rotated from previous position = 0.0523 degrees |
| 35773 | | atoms outside contour = 4163, contour level = 0.0074676 |
| 35774 | | |
| 35775 | | Position of CopG_Q9QZE5 (#9) relative to |
| 35776 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 35777 | | Matrix rotation and translation |
| 35778 | | 0.49550602 -0.51968681 -0.69598807 274.31952932 |
| 35779 | | 0.53772290 -0.44574109 0.71565981 319.08931419 |
| 35780 | | -0.68214945 -0.72886247 0.05858011 294.80474301 |
| 35781 | | Axis -0.80688849 -0.00773005 0.59065321 |
| 35782 | | Axis point 0.00000000 282.58706202 125.53796346 |
| 35783 | | Rotation angle (degrees) 116.47629292 |
| 35784 | | Shift along axis -49.68447857 |
| 35785 | | |
| 35786 | | |
| 35787 | | > fitmap #9 inMap #34 |
| 35788 | | |
| 35789 | | Fit molecule CopG_Q9QZE5 (#9) to map relion_locres_filtered_20240326_GT.mrc |
| 35790 | | (#34) using 6673 atoms |
| 35791 | | average map value = 0.008518, steps = 104 |
| 35792 | | shifted from previous position = 0.00642 |
| 35793 | | rotated from previous position = 0.031 degrees |
| 35794 | | atoms outside contour = 4165, contour level = 0.0074676 |
| 35795 | | |
| 35796 | | Position of CopG_Q9QZE5 (#9) relative to |
| 35797 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 35798 | | Matrix rotation and translation |
| 35799 | | 0.49574574 -0.51972562 -0.69578835 274.32666522 |
| 35800 | | 0.53787996 -0.44526973 0.71583519 319.08087152 |
| 35801 | | -0.68185138 -0.72912286 0.05880943 294.81961287 |
| 35802 | | Axis -0.80692092 -0.00778295 0.59060820 |
| 35803 | | Axis point 0.00000000 282.65484655 125.47384425 |
| 35804 | | Rotation angle (degrees) 116.44619964 |
| 35805 | | Shift along axis -49.72043419 |
| 35806 | | |
| 35807 | | |
| 35808 | | > show #8 models |
| 35809 | | |
| 35810 | | > fitmap #8 inMap #34 |
| 35811 | | |
| 35812 | | Fit molecule CopD_Q5XJY5 (#8) to map relion_locres_filtered_20240326_GT.mrc |
| 35813 | | (#34) using 1462 atoms |
| 35814 | | average map value = 0.00841, steps = 156 |
| 35815 | | shifted from previous position = 2.76 |
| 35816 | | rotated from previous position = 12.4 degrees |
| 35817 | | atoms outside contour = 724, contour level = 0.0074676 |
| 35818 | | |
| 35819 | | Position of CopD_Q5XJY5 (#8) relative to |
| 35820 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 35821 | | Matrix rotation and translation |
| 35822 | | 0.07140636 0.98850099 0.13329270 -99.10582965 |
| 35823 | | -0.91228156 0.01069242 0.40942402 162.87483596 |
| 35824 | | 0.40329082 -0.15083595 0.90255473 445.96344647 |
| 35825 | | Axis -0.28013823 -0.13500304 -0.95041925 |
| 35826 | | Axis point -59.71258172 162.64687932 0.00000000 |
| 35827 | | Rotation angle (degrees) 90.43964897 |
| 35828 | | Shift along axis -418.07751033 |
| 35829 | | |
| 35830 | | |
| 35831 | | > hide #8 models |
| 35832 | | |
| 35833 | | > show #3 models |
| 35834 | | |
| 35835 | | > fitmap #3 inMap #34 |
| 35836 | | |
| 35837 | | Fit molecule CopA_F8WHL2.pdb (#3) to map |
| 35838 | | relion_locres_filtered_20240326_GT.mrc (#34) using 9810 atoms |
| 35839 | | average map value = 0.005549, steps = 72 |
| 35840 | | shifted from previous position = 2.84 |
| 35841 | | rotated from previous position = 1.34 degrees |
| 35842 | | atoms outside contour = 6409, contour level = 0.0074676 |
| 35843 | | |
| 35844 | | Position of CopA_F8WHL2.pdb (#3) relative to |
| 35845 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 35846 | | Matrix rotation and translation |
| 35847 | | 0.90931516 0.39284566 0.13717951 209.67745401 |
| 35848 | | -0.21905740 0.73223243 -0.64486395 282.20868279 |
| 35849 | | -0.35377929 0.55633438 0.75188580 275.94887322 |
| 35850 | | Axis 0.83725126 0.34220484 -0.42650460 |
| 35851 | | Axis point 0.00000000 -384.56632735 515.35761515 |
| 35852 | | Rotation angle (degrees) 45.83582590 |
| 35853 | | Shift along axis 154.43242544 |
| 35854 | | |
| 35855 | | |
| 35856 | | > fitmap #3 inMap #34 |
| 35857 | | |
| 35858 | | Fit molecule CopA_F8WHL2.pdb (#3) to map |
| 35859 | | relion_locres_filtered_20240326_GT.mrc (#34) using 9810 atoms |
| 35860 | | average map value = 0.005549, steps = 60 |
| 35861 | | shifted from previous position = 0.034 |
| 35862 | | rotated from previous position = 0.0195 degrees |
| 35863 | | atoms outside contour = 6415, contour level = 0.0074676 |
| 35864 | | |
| 35865 | | Position of CopA_F8WHL2.pdb (#3) relative to |
| 35866 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 35867 | | Matrix rotation and translation |
| 35868 | | 0.90917434 0.39314923 0.13724317 209.70451247 |
| 35869 | | -0.21925634 0.73215869 -0.64488007 282.20950559 |
| 35870 | | -0.35401788 0.55621698 0.75186036 275.96663282 |
| 35871 | | Axis 0.83704470 0.34235989 -0.42678552 |
| 35872 | | Axis point 0.00000000 -384.65716396 515.42335056 |
| 35873 | | Rotation angle (degrees) 45.84540952 |
| 35874 | | Shift along axis 154.37070138 |
| 35875 | | |
| 35876 | | |
| 35877 | | > hide #3 models |
| 35878 | | |
| 35879 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 35880 | | > dataset/Chimera sessions/20240326_leaf_fitting_v11.cxs" |
| 35881 | | |
| 35882 | | > show #4 models |
| 35883 | | |
| 35884 | | > fitmap #4 inMap #34 |
| 35885 | | |
| 35886 | | Fit molecule CopB_Q9JIF7.pdb (#4) to map |
| 35887 | | relion_locres_filtered_20240326_GT.mrc (#34) using 7501 atoms |
| 35888 | | average map value = 0.007457, steps = 148 |
| 35889 | | shifted from previous position = 2.51 |
| 35890 | | rotated from previous position = 2.87 degrees |
| 35891 | | atoms outside contour = 4420, contour level = 0.0074676 |
| 35892 | | |
| 35893 | | Position of CopB_Q9JIF7.pdb (#4) relative to |
| 35894 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 35895 | | Matrix rotation and translation |
| 35896 | | -0.01680119 -0.69766311 0.71622895 219.87649830 |
| 35897 | | -0.07060979 0.71536949 0.69516958 243.07737626 |
| 35898 | | -0.99736251 -0.03889310 -0.06128091 272.76153712 |
| 35899 | | Axis -0.37322028 0.87124316 0.31881340 |
| 35900 | | Axis point 259.30872006 0.00000000 -51.77031004 |
| 35901 | | Rotation angle (degrees) 100.44877054 |
| 35902 | | Shift along axis 216.67716450 |
| 35903 | | |
| 35904 | | |
| 35905 | | > hide #4 models |
| 35906 | | |
| 35907 | | > show #5 models |
| 35908 | | |
| 35909 | | > fitmap #5 inMap #34 |
| 35910 | | |
| 35911 | | Fit molecule hArf1_P84078 (#5) to map relion_locres_filtered_20240326_GT.mrc |
| 35912 | | (#34) using 1457 atoms |
| 35913 | | average map value = 0.007776, steps = 60 |
| 35914 | | shifted from previous position = 3.87 |
| 35915 | | rotated from previous position = 6.73 degrees |
| 35916 | | atoms outside contour = 819, contour level = 0.0074676 |
| 35917 | | |
| 35918 | | Position of hArf1_P84078 (#5) relative to |
| 35919 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 35920 | | Matrix rotation and translation |
| 35921 | | 0.04242972 -0.02831736 0.99869807 172.65394789 |
| 35922 | | -0.66600925 -0.74590924 0.00714571 238.26333147 |
| 35923 | | 0.74473578 -0.66544535 -0.05050834 212.55575199 |
| 35924 | | Axis -0.69988454 0.26426798 -0.66356919 |
| 35925 | | Axis point 0.00000000 166.46081014 -28.75809037 |
| 35926 | | Rotation angle (degrees) 151.28184306 |
| 35927 | | Shift along axis -198.91790665 |
| 35928 | | |
| 35929 | | |
| 35930 | | > hide #5 models |
| 35931 | | |
| 35932 | | > show #5 models |
| 35933 | | |
| 35934 | | > hide #!26.1 models |
| 35935 | | |
| 35936 | | > show #!26.1 models |
| 35937 | | |
| 35938 | | > hide #5 models |
| 35939 | | |
| 35940 | | > show #5 models |
| 35941 | | |
| 35942 | | > hide #5 models |
| 35943 | | |
| 35944 | | > hide #!26.1 models |
| 35945 | | |
| 35946 | | > show #!26.1 models |
| 35947 | | |
| 35948 | | > hide #25.5 models |
| 35949 | | |
| 35950 | | > show #5 models |
| 35951 | | |
| 35952 | | > show #6 models |
| 35953 | | |
| 35954 | | > hide #!26.1 models |
| 35955 | | |
| 35956 | | > fitmap #6 inMap #34 |
| 35957 | | |
| 35958 | | Fit molecule hArf1_P84078 (#6) to map relion_locres_filtered_20240326_GT.mrc |
| 35959 | | (#34) using 1457 atoms |
| 35960 | | average map value = 0.01, steps = 72 |
| 35961 | | shifted from previous position = 0.73 |
| 35962 | | rotated from previous position = 2.1 degrees |
| 35963 | | atoms outside contour = 626, contour level = 0.0074676 |
| 35964 | | |
| 35965 | | Position of hArf1_P84078 (#6) relative to |
| 35966 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 35967 | | Matrix rotation and translation |
| 35968 | | -0.84132215 -0.49459873 0.21805759 292.95471261 |
| 35969 | | -0.49051987 0.52911808 -0.69240472 231.43475503 |
| 35970 | | 0.22708428 -0.68949701 -0.68776928 256.78767603 |
| 35971 | | Axis 0.28166080 -0.87438969 0.39510742 |
| 35972 | | Axis point 183.36285933 0.00000000 181.12263792 |
| 35973 | | Rotation angle (degrees) 179.70425446 |
| 35974 | | Shift along axis -18.39158846 |
| 35975 | | |
| 35976 | | |
| 35977 | | > hide #6 models |
| 35978 | | |
| 35979 | | > hide #5 models |
| 35980 | | |
| 35981 | | > show #7 models |
| 35982 | | |
| 35983 | | > fitmap #7 inMap #34 |
| 35984 | | |
| 35985 | | Fit molecule CopBprime_O55029.pdb (#7) to map |
| 35986 | | relion_locres_filtered_20240326_GT.mrc (#34) using 7214 atoms |
| 35987 | | average map value = 0.008399, steps = 84 |
| 35988 | | shifted from previous position = 0.843 |
| 35989 | | rotated from previous position = 2.57 degrees |
| 35990 | | atoms outside contour = 3562, contour level = 0.0074676 |
| 35991 | | |
| 35992 | | Position of CopBprime_O55029.pdb (#7) relative to |
| 35993 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 35994 | | Matrix rotation and translation |
| 35995 | | -0.13431586 -0.22738621 -0.96449715 237.14149448 |
| 35996 | | -0.00061001 -0.97329764 0.22954593 213.64544034 |
| 35997 | | -0.99093838 0.03142001 0.13059060 275.37738819 |
| 35998 | | Axis -0.65541234 0.08746916 0.75018918 |
| 35999 | | Axis point 228.35039389 105.10157043 0.00000000 |
| 36000 | | Rotation angle (degrees) 171.30665467 |
| 36001 | | Shift along axis 69.84706251 |
| 36002 | | |
| 36003 | | |
| 36004 | | > fitmap #7 inMap #34 |
| 36005 | | |
| 36006 | | Fit molecule CopBprime_O55029.pdb (#7) to map |
| 36007 | | relion_locres_filtered_20240326_GT.mrc (#34) using 7214 atoms |
| 36008 | | average map value = 0.008399, steps = 44 |
| 36009 | | shifted from previous position = 0.0128 |
| 36010 | | rotated from previous position = 0.0342 degrees |
| 36011 | | atoms outside contour = 3562, contour level = 0.0074676 |
| 36012 | | |
| 36013 | | Position of CopBprime_O55029.pdb (#7) relative to |
| 36014 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 36015 | | Matrix rotation and translation |
| 36016 | | -0.13390870 -0.22779018 -0.96445844 237.15410914 |
| 36017 | | -0.00039761 -0.97321119 0.22991264 213.64052796 |
| 36018 | | -0.99099359 0.03117078 0.13023088 275.38236789 |
| 36019 | | Axis -0.65555388 0.08752670 0.75005879 |
| 36020 | | Axis point 228.37335345 105.12898072 0.00000000 |
| 36021 | | Rotation angle (degrees) 171.28131559 |
| 36022 | | Shift along axis 69.78491755 |
| 36023 | | |
| 36024 | | |
| 36025 | | > fitmap #7 inMap #34 |
| 36026 | | |
| 36027 | | Fit molecule CopBprime_O55029.pdb (#7) to map |
| 36028 | | relion_locres_filtered_20240326_GT.mrc (#34) using 7214 atoms |
| 36029 | | average map value = 0.008399, steps = 44 |
| 36030 | | shifted from previous position = 0.0077 |
| 36031 | | rotated from previous position = 0.0068 degrees |
| 36032 | | atoms outside contour = 3563, contour level = 0.0074676 |
| 36033 | | |
| 36034 | | Position of CopBprime_O55029.pdb (#7) relative to |
| 36035 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 36036 | | Matrix rotation and translation |
| 36037 | | -0.13397701 -0.22770446 -0.96446920 237.14731874 |
| 36038 | | -0.00036520 -0.97323212 0.22982406 213.64279778 |
| 36039 | | -0.99098437 0.03114337 0.13030757 275.38493157 |
| 36040 | | Axis -0.65552905 0.08748443 0.75008542 |
| 36041 | | Axis point 228.36528533 105.13378512 0.00000000 |
| 36042 | | Rotation angle (degrees) 171.28368734 |
| 36043 | | Shift along axis 69.79568160 |
| 36044 | | |
| 36045 | | |
| 36046 | | > hide #7 models |
| 36047 | | |
| 36048 | | > show #8 models |
| 36049 | | |
| 36050 | | > fitmap #8 inMap #34 |
| 36051 | | |
| 36052 | | Fit molecule CopD_Q5XJY5 (#8) to map relion_locres_filtered_20240326_GT.mrc |
| 36053 | | (#34) using 1462 atoms |
| 36054 | | average map value = 0.00841, steps = 28 |
| 36055 | | shifted from previous position = 0.0383 |
| 36056 | | rotated from previous position = 0.0735 degrees |
| 36057 | | atoms outside contour = 722, contour level = 0.0074676 |
| 36058 | | |
| 36059 | | Position of CopD_Q5XJY5 (#8) relative to |
| 36060 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 36061 | | Matrix rotation and translation |
| 36062 | | 0.07016472 0.98859876 0.13322696 -99.31004014 |
| 36063 | | -0.91248006 0.00964302 0.40900753 163.18466590 |
| 36064 | | 0.40305963 -0.15026484 0.90275325 445.78508052 |
| 36065 | | Axis -0.27964682 -0.13492146 -0.95057554 |
| 36066 | | Axis point -59.54465786 162.68993060 0.00000000 |
| 36067 | | Rotation angle (degrees) 90.49959742 |
| 36068 | | Shift along axis -417.99777082 |
| 36069 | | |
| 36070 | | |
| 36071 | | > fitmap #8 inMap #34 |
| 36072 | | |
| 36073 | | Fit molecule CopD_Q5XJY5 (#8) to map relion_locres_filtered_20240326_GT.mrc |
| 36074 | | (#34) using 1462 atoms |
| 36075 | | average map value = 0.00841, steps = 28 |
| 36076 | | shifted from previous position = 0.0322 |
| 36077 | | rotated from previous position = 0.0518 degrees |
| 36078 | | atoms outside contour = 723, contour level = 0.0074676 |
| 36079 | | |
| 36080 | | Position of CopD_Q5XJY5 (#8) relative to |
| 36081 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 36082 | | Matrix rotation and translation |
| 36083 | | 0.07106380 0.98853589 0.13321692 -99.16933695 |
| 36084 | | -0.91244747 0.01046829 0.40905994 162.89308632 |
| 36085 | | 0.40297587 -0.15062280 0.90273098 445.87345823 |
| 36086 | | Axis -0.27985003 -0.13488365 -0.95052110 |
| 36087 | | Axis point -59.63440143 162.62315862 0.00000000 |
| 36088 | | Rotation angle (degrees) 90.45083426 |
| 36089 | | Shift along axis -418.03120194 |
| 36090 | | |
| 36091 | | |
| 36092 | | > hide #8 models |
| 36093 | | |
| 36094 | | > show #10 models |
| 36095 | | |
| 36096 | | > fitmap #10 inMap #34 |
| 36097 | | |
| 36098 | | Fit molecule CopZ1_P61924.pdb (#10) to map |
| 36099 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1420 atoms |
| 36100 | | average map value = 0.009234, steps = 48 |
| 36101 | | shifted from previous position = 1.12 |
| 36102 | | rotated from previous position = 1.79 degrees |
| 36103 | | atoms outside contour = 675, contour level = 0.0074676 |
| 36104 | | |
| 36105 | | Position of CopZ1_P61924.pdb (#10) relative to |
| 36106 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 36107 | | Matrix rotation and translation |
| 36108 | | 0.16424997 -0.94520201 -0.28216152 280.94831575 |
| 36109 | | -0.37364491 0.20511456 -0.90460904 278.13209898 |
| 36110 | | 0.91291371 0.25401022 -0.31947985 253.91031297 |
| 36111 | | Axis 0.65834031 -0.67905499 0.32476508 |
| 36112 | | Axis point 174.97275092 0.00000000 294.15667076 |
| 36113 | | Rotation angle (degrees) 118.36310421 |
| 36114 | | Shift along axis 78.55381362 |
| 36115 | | |
| 36116 | | |
| 36117 | | > fitmap #10 inMap #34 |
| 36118 | | |
| 36119 | | Fit molecule CopZ1_P61924.pdb (#10) to map |
| 36120 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1420 atoms |
| 36121 | | average map value = 0.009234, steps = 40 |
| 36122 | | shifted from previous position = 0.0387 |
| 36123 | | rotated from previous position = 0.022 degrees |
| 36124 | | atoms outside contour = 674, contour level = 0.0074676 |
| 36125 | | |
| 36126 | | Position of CopZ1_P61924.pdb (#10) relative to |
| 36127 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 36128 | | Matrix rotation and translation |
| 36129 | | 0.16427782 -0.94520359 -0.28214001 280.95341777 |
| 36130 | | -0.37329087 0.20518314 -0.90473964 278.15427915 |
| 36131 | | 0.91305352 0.25394894 -0.31912883 253.87919273 |
| 36132 | | Axis 0.65828937 -0.67902904 0.32492256 |
| 36133 | | Axis point 174.96864287 0.00000000 294.21495040 |
| 36134 | | Rotation angle (degrees) 118.34853786 |
| 36135 | | Shift along axis 78.56489358 |
| 36136 | | |
| 36137 | | |
| 36138 | | > hide #10 models |
| 36139 | | |
| 36140 | | > show #11 models |
| 36141 | | |
| 36142 | | > fitmap #11 inMap #34 |
| 36143 | | |
| 36144 | | Fit molecule Golph3_ Q9CRA5.pdb (#11) to map |
| 36145 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2367 atoms |
| 36146 | | average map value = 0.007663, steps = 48 |
| 36147 | | shifted from previous position = 0.709 |
| 36148 | | rotated from previous position = 2.1 degrees |
| 36149 | | atoms outside contour = 1240, contour level = 0.0074676 |
| 36150 | | |
| 36151 | | Position of Golph3_ Q9CRA5.pdb (#11) relative to |
| 36152 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 36153 | | Matrix rotation and translation |
| 36154 | | 0.65421830 -0.23794002 0.71790178 247.65193454 |
| 36155 | | -0.70329335 -0.54051642 0.46175800 269.95611284 |
| 36156 | | 0.27816699 -0.80698609 -0.52095737 226.95063267 |
| 36157 | | Axis -0.89276656 0.30942450 -0.32745129 |
| 36158 | | Axis point 0.00000000 214.70262422 -10.31695525 |
| 36159 | | Rotation angle (degrees) 134.71878815 |
| 36160 | | Shift along axis -211.87960680 |
| 36161 | | |
| 36162 | | |
| 36163 | | > fitmap #11 inMap #34 |
| 36164 | | |
| 36165 | | Fit molecule Golph3_ Q9CRA5.pdb (#11) to map |
| 36166 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2367 atoms |
| 36167 | | average map value = 0.007663, steps = 28 |
| 36168 | | shifted from previous position = 0.0299 |
| 36169 | | rotated from previous position = 0.0482 degrees |
| 36170 | | atoms outside contour = 1239, contour level = 0.0074676 |
| 36171 | | |
| 36172 | | Position of Golph3_ Q9CRA5.pdb (#11) relative to |
| 36173 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 36174 | | Matrix rotation and translation |
| 36175 | | 0.65431825 -0.23860616 0.71758953 247.67989817 |
| 36176 | | -0.70349800 -0.54016367 0.46185903 269.95704958 |
| 36177 | | 0.27741339 -0.80702559 -0.52129790 226.95194987 |
| 36178 | | Axis -0.89279567 0.30971086 -0.32710100 |
| 36179 | | Axis point 0.00000000 214.77630651 -10.28288940 |
| 36180 | | Rotation angle (degrees) 134.71426631 |
| 36181 | | Shift along axis -211.75512060 |
| 36182 | | |
| 36183 | | |
| 36184 | | > hide #11 models |
| 36185 | | |
| 36186 | | > show #12 models |
| 36187 | | |
| 36188 | | > fitmap #12 inMap #34 |
| 36189 | | |
| 36190 | | Fit molecule CopZ2_Q9CTG7.pdb (#12) to map |
| 36191 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1463 atoms |
| 36192 | | average map value = 0.009106, steps = 44 |
| 36193 | | shifted from previous position = 1.02 |
| 36194 | | rotated from previous position = 1.24 degrees |
| 36195 | | atoms outside contour = 738, contour level = 0.0074676 |
| 36196 | | |
| 36197 | | Position of CopZ2_Q9CTG7.pdb (#12) relative to |
| 36198 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 36199 | | Matrix rotation and translation |
| 36200 | | -0.82091914 0.29004883 -0.49189784 280.03421097 |
| 36201 | | 0.42279215 0.88773522 -0.18213459 278.62685215 |
| 36202 | | 0.38384711 -0.35748831 -0.85138918 253.04319994 |
| 36203 | | Axis -0.19420328 -0.96988268 0.14701250 |
| 36204 | | Axis point 75.80135238 0.00000000 175.21622813 |
| 36205 | | Rotation angle (degrees) 153.16199409 |
| 36206 | | Shift along axis -287.41840673 |
| 36207 | | |
| 36208 | | |
| 36209 | | > fitmap #12 inMap #34 |
| 36210 | | |
| 36211 | | Fit molecule CopZ2_Q9CTG7.pdb (#12) to map |
| 36212 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1463 atoms |
| 36213 | | average map value = 0.009106, steps = 40 |
| 36214 | | shifted from previous position = 0.0192 |
| 36215 | | rotated from previous position = 0.0109 degrees |
| 36216 | | atoms outside contour = 741, contour level = 0.0074676 |
| 36217 | | |
| 36218 | | Position of CopZ2_Q9CTG7.pdb (#12) relative to |
| 36219 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 36220 | | Matrix rotation and translation |
| 36221 | | -0.82083085 0.29001682 -0.49206402 280.05037052 |
| 36222 | | 0.42282521 0.88772302 -0.18211730 278.62125297 |
| 36223 | | 0.38399948 -0.35754456 -0.85129685 253.05327012 |
| 36224 | | Axis -0.19421314 -0.96987800 0.14703037 |
| 36225 | | Axis point 75.79151350 0.00000000 175.23683625 |
| 36226 | | Rotation angle (degrees) 153.15130828 |
| 36227 | | Shift along axis -287.41157022 |
| 36228 | | |
| 36229 | | |
| 36230 | | > hide #12 models |
| 36231 | | |
| 36232 | | > show #!13 models |
| 36233 | | |
| 36234 | | > hide #!13 models |
| 36235 | | |
| 36236 | | > show #!14 models |
| 36237 | | |
| 36238 | | > hide #!14 models |
| 36239 | | |
| 36240 | | > hide #24 models |
| 36241 | | |
| 36242 | | > show #24 models |
| 36243 | | |
| 36244 | | > fitmap #24 inMap #34 |
| 36245 | | |
| 36246 | | Fit molecule 3kn1_Golph3_xtal.cif (#24) to map |
| 36247 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1934 atoms |
| 36248 | | average map value = 0.008452, steps = 48 |
| 36249 | | shifted from previous position = 0.0431 |
| 36250 | | rotated from previous position = 0.0627 degrees |
| 36251 | | atoms outside contour = 895, contour level = 0.0074676 |
| 36252 | | |
| 36253 | | Position of 3kn1_Golph3_xtal.cif (#24) relative to |
| 36254 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 36255 | | Matrix rotation and translation |
| 36256 | | 0.23405376 0.94982303 -0.20749712 197.35570778 |
| 36257 | | 0.00020131 -0.21347264 -0.97694902 258.10756002 |
| 36258 | | -0.97222364 0.22861682 -0.05015528 197.38522791 |
| 36259 | | Axis 0.70310302 0.44599930 -0.55383279 |
| 36260 | | Axis point 0.00000000 -45.20651034 254.35443028 |
| 36261 | | Rotation angle (degrees) 120.98322448 |
| 36262 | | Shift along axis 144.55877326 |
| 36263 | | |
| 36264 | | |
| 36265 | | > hide #25.1 models |
| 36266 | | |
| 36267 | | > show #25.1 models |
| 36268 | | |
| 36269 | | > hide #25.1 models |
| 36270 | | |
| 36271 | | > show #25.1 models |
| 36272 | | |
| 36273 | | > hide #25.1 models |
| 36274 | | |
| 36275 | | > show #25.1 models |
| 36276 | | |
| 36277 | | > hide #27.2 models |
| 36278 | | |
| 36279 | | > hide #!30 models |
| 36280 | | |
| 36281 | | > hide #25.1 models |
| 36282 | | |
| 36283 | | > show #25.1 models |
| 36284 | | |
| 36285 | | > fitmap #25.1 inMap #34 |
| 36286 | | |
| 36287 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif A (#25.1) to map |
| 36288 | | relion_locres_filtered_20240326_GT.mrc (#34) using 3251 atoms |
| 36289 | | average map value = 0.01111, steps = 60 |
| 36290 | | shifted from previous position = 0.904 |
| 36291 | | rotated from previous position = 1.72 degrees |
| 36292 | | atoms outside contour = 1163, contour level = 0.0074676 |
| 36293 | | |
| 36294 | | Position of 5nzr_COPI_coat_leaf_2017.cif A (#25.1) relative to |
| 36295 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 36296 | | Matrix rotation and translation |
| 36297 | | -0.50807931 0.84617772 -0.16074411 226.49375297 |
| 36298 | | -0.85922710 -0.51091764 0.02630506 400.52629656 |
| 36299 | | -0.05986824 0.15148075 0.98664551 146.92791984 |
| 36300 | | Axis 0.07307543 -0.05888961 -0.99558626 |
| 36301 | | Axis point 229.70717814 128.48284437 0.00000000 |
| 36302 | | Rotation angle (degrees) 121.07607407 |
| 36303 | | Shift along axis -153.31512685 |
| 36304 | | |
| 36305 | | |
| 36306 | | > fitmap #25.1 inMap #34 |
| 36307 | | |
| 36308 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif A (#25.1) to map |
| 36309 | | relion_locres_filtered_20240326_GT.mrc (#34) using 3251 atoms |
| 36310 | | average map value = 0.01111, steps = 44 |
| 36311 | | shifted from previous position = 0.0149 |
| 36312 | | rotated from previous position = 0.0266 degrees |
| 36313 | | atoms outside contour = 1160, contour level = 0.0074676 |
| 36314 | | |
| 36315 | | Position of 5nzr_COPI_coat_leaf_2017.cif A (#25.1) relative to |
| 36316 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 36317 | | Matrix rotation and translation |
| 36318 | | -0.50771421 0.84636989 -0.16088590 226.45621049 |
| 36319 | | -0.85944782 -0.51054152 0.02639693 400.53106900 |
| 36320 | | -0.05979736 0.15167513 0.98661994 146.90491855 |
| 36321 | | Axis 0.07311688 -0.05899892 -0.99557674 |
| 36322 | | Axis point 229.74228973 128.45284652 0.00000000 |
| 36323 | | Rotation angle (degrees) 121.05213979 |
| 36324 | | Shift along axis -153.32824889 |
| 36325 | | |
| 36326 | | |
| 36327 | | > fitmap #25.1 inMap #34 |
| 36328 | | |
| 36329 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif A (#25.1) to map |
| 36330 | | relion_locres_filtered_20240326_GT.mrc (#34) using 3251 atoms |
| 36331 | | average map value = 0.01111, steps = 44 |
| 36332 | | shifted from previous position = 0.0327 |
| 36333 | | rotated from previous position = 0.0357 degrees |
| 36334 | | atoms outside contour = 1163, contour level = 0.0074676 |
| 36335 | | |
| 36336 | | Position of 5nzr_COPI_coat_leaf_2017.cif A (#25.1) relative to |
| 36337 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 36338 | | Matrix rotation and translation |
| 36339 | | -0.50793455 0.84614433 -0.16137614 226.56209347 |
| 36340 | | -0.85928642 -0.51082194 0.02622549 400.56407963 |
| 36341 | | -0.06024392 0.15198915 0.98654445 146.96573947 |
| 36342 | | Axis 0.07341508 -0.05903637 -0.99555258 |
| 36343 | | Axis point 229.78643902 128.44653831 0.00000000 |
| 36344 | | Rotation angle (degrees) 121.07141163 |
| 36345 | | Shift along axis -153.32689327 |
| 36346 | | |
| 36347 | | |
| 36348 | | > fitmap #25.1 inMap #34 |
| 36349 | | |
| 36350 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif A (#25.1) to map |
| 36351 | | relion_locres_filtered_20240326_GT.mrc (#34) using 3251 atoms |
| 36352 | | average map value = 0.01111, steps = 60 |
| 36353 | | shifted from previous position = 0.0217 |
| 36354 | | rotated from previous position = 0.0104 degrees |
| 36355 | | atoms outside contour = 1163, contour level = 0.0074676 |
| 36356 | | |
| 36357 | | Position of 5nzr_COPI_coat_leaf_2017.cif A (#25.1) relative to |
| 36358 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 36359 | | Matrix rotation and translation |
| 36360 | | -0.50794397 0.84616252 -0.16125102 226.54158397 |
| 36361 | | -0.85929324 -0.51080380 0.02635510 400.52948403 |
| 36362 | | -0.06006694 0.15194883 0.98656145 146.95116687 |
| 36363 | | Axis 0.07331522 -0.05906611 -0.99555817 |
| 36364 | | Axis point 229.75811826 128.43643924 0.00000000 |
| 36365 | | Rotation angle (degrees) 121.07055136 |
| 36366 | | Shift along axis -153.34720978 |
| 36367 | | |
| 36368 | | |
| 36369 | | > fitmap #25.1 inMap #34 |
| 36370 | | |
| 36371 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif A (#25.1) to map |
| 36372 | | relion_locres_filtered_20240326_GT.mrc (#34) using 3251 atoms |
| 36373 | | average map value = 0.01111, steps = 48 |
| 36374 | | shifted from previous position = 0.022 |
| 36375 | | rotated from previous position = 0.00674 degrees |
| 36376 | | atoms outside contour = 1160, contour level = 0.0074676 |
| 36377 | | |
| 36378 | | Position of 5nzr_COPI_coat_leaf_2017.cif A (#25.1) relative to |
| 36379 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 36380 | | Matrix rotation and translation |
| 36381 | | -0.50788552 0.84621218 -0.16117454 226.52173670 |
| 36382 | | -0.85933336 -0.51073460 0.02638836 400.51304405 |
| 36383 | | -0.05998726 0.15190492 0.98657306 146.92661256 |
| 36384 | | Axis 0.07326658 -0.05906508 -0.99556181 |
| 36385 | | Axis point 229.74941295 128.43089793 0.00000000 |
| 36386 | | Rotation angle (degrees) 121.06589357 |
| 36387 | | Shift along axis -153.33438642 |
| 36388 | | |
| 36389 | | |
| 36390 | | > fitmap #25.1 inMap #34 |
| 36391 | | |
| 36392 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif A (#25.1) to map |
| 36393 | | relion_locres_filtered_20240326_GT.mrc (#34) using 3251 atoms |
| 36394 | | average map value = 0.01111, steps = 44 |
| 36395 | | shifted from previous position = 0.0223 |
| 36396 | | rotated from previous position = 0.0218 degrees |
| 36397 | | atoms outside contour = 1160, contour level = 0.0074676 |
| 36398 | | |
| 36399 | | Position of 5nzr_COPI_coat_leaf_2017.cif A (#25.1) relative to |
| 36400 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 36401 | | Matrix rotation and translation |
| 36402 | | -0.50772527 0.84636665 -0.16086804 226.45629918 |
| 36403 | | -0.85944082 -0.51055412 0.02638089 400.53445307 |
| 36404 | | -0.05980394 0.15165080 0.98662329 146.90614497 |
| 36405 | | Axis 0.07311256 -0.05898508 -0.99557788 |
| 36406 | | Axis point 229.74200269 128.45676344 0.00000000 |
| 36407 | | Rotation angle (degrees) 121.05281916 |
| 36408 | | Shift along axis -153.32526360 |
| 36409 | | |
| 36410 | | |
| 36411 | | > hide #25.1 models |
| 36412 | | |
| 36413 | | > show #25.1 models |
| 36414 | | |
| 36415 | | > hide #25.1 models |
| 36416 | | |
| 36417 | | > show #25.1 models |
| 36418 | | |
| 36419 | | > hide #25.1 models |
| 36420 | | |
| 36421 | | > show #25.1 models |
| 36422 | | |
| 36423 | | > show #27.2 models |
| 36424 | | |
| 36425 | | > fitmap #27.2 inMap #34 |
| 36426 | | |
| 36427 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) to map |
| 36428 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1407 atoms |
| 36429 | | average map value = 0.009081, steps = 72 |
| 36430 | | shifted from previous position = 2.95 |
| 36431 | | rotated from previous position = 3.29 degrees |
| 36432 | | atoms outside contour = 722, contour level = 0.0074676 |
| 36433 | | |
| 36434 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) relative to |
| 36435 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 36436 | | Matrix rotation and translation |
| 36437 | | 0.98952834 0.01496424 -0.14356094 -45.88490327 |
| 36438 | | 0.02378468 0.96410971 0.26443667 -113.51694283 |
| 36439 | | 0.14236559 -0.26508213 0.95365796 -31.11838703 |
| 36440 | | Axis -0.87982037 -0.47508035 0.01465558 |
| 36441 | | Axis point 0.00000000 -164.25502779 238.38714184 |
| 36442 | | Rotation angle (degrees) 17.51313227 |
| 36443 | | Shift along axis 93.84408321 |
| 36444 | | |
| 36445 | | |
| 36446 | | > fitmap #27.2 inMap #34 |
| 36447 | | |
| 36448 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) to map |
| 36449 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1407 atoms |
| 36450 | | average map value = 0.009081, steps = 44 |
| 36451 | | shifted from previous position = 0.00588 |
| 36452 | | rotated from previous position = 0.0147 degrees |
| 36453 | | atoms outside contour = 722, contour level = 0.0074676 |
| 36454 | | |
| 36455 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) relative to |
| 36456 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 36457 | | Matrix rotation and translation |
| 36458 | | 0.98951164 0.01477622 -0.14369546 -45.82658996 |
| 36459 | | 0.02398369 0.96414263 0.26429865 -113.49712905 |
| 36460 | | 0.14244826 -0.26497294 0.95367596 -31.13698708 |
| 36461 | | Axis -0.87956809 -0.47552691 0.01530140 |
| 36462 | | Axis point 0.00000000 -164.59272813 238.32826730 |
| 36463 | | Rotation angle (degrees) 17.50987486 |
| 36464 | | Shift along axis 93.80210585 |
| 36465 | | |
| 36466 | | |
| 36467 | | > fitmap #27.2 inMap #34 |
| 36468 | | |
| 36469 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) to map |
| 36470 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1407 atoms |
| 36471 | | average map value = 0.009081, steps = 48 |
| 36472 | | shifted from previous position = 0.0111 |
| 36473 | | rotated from previous position = 0.0591 degrees |
| 36474 | | atoms outside contour = 722, contour level = 0.0074676 |
| 36475 | | |
| 36476 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) relative to |
| 36477 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 36478 | | Matrix rotation and translation |
| 36479 | | 0.98953649 0.01421292 -0.14358105 -45.76249307 |
| 36480 | | 0.02436872 0.96437677 0.26340768 -113.35993219 |
| 36481 | | 0.14221003 -0.26415040 0.95393966 -31.30508543 |
| 36482 | | Axis -0.87914478 -0.47625417 0.01692405 |
| 36483 | | Axis point 0.00000000 -166.10252953 238.49904609 |
| 36484 | | Rotation angle (degrees) 17.46003583 |
| 36485 | | Shift along axis 93.69018859 |
| 36486 | | |
| 36487 | | |
| 36488 | | > hide #27.2 models |
| 36489 | | |
| 36490 | | > show #27.2 models |
| 36491 | | |
| 36492 | | > hide #27.2 models |
| 36493 | | |
| 36494 | | > show #27.2 models |
| 36495 | | |
| 36496 | | > hide #27.2 models |
| 36497 | | |
| 36498 | | > show #27.2 models |
| 36499 | | |
| 36500 | | > hide #27.2 models |
| 36501 | | |
| 36502 | | > show #!30 models |
| 36503 | | |
| 36504 | | > hide #25.1 models |
| 36505 | | |
| 36506 | | > fitmap #30 inMap #34 |
| 36507 | | |
| 36508 | | Fit molecule 4j87_yeast_alphaCOPI.cif (#30) to map |
| 36509 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2737 atoms |
| 36510 | | average map value = 0.009304, steps = 64 |
| 36511 | | shifted from previous position = 1.57 |
| 36512 | | rotated from previous position = 1.77 degrees |
| 36513 | | atoms outside contour = 1189, contour level = 0.0074676 |
| 36514 | | |
| 36515 | | Position of 4j87_yeast_alphaCOPI.cif (#30) relative to |
| 36516 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 36517 | | Matrix rotation and translation |
| 36518 | | 0.79092025 -0.51961367 0.32318231 236.68441941 |
| 36519 | | -0.42094200 -0.07867712 0.90366905 306.91695679 |
| 36520 | | -0.44413174 -0.85077115 -0.28095454 224.05164929 |
| 36521 | | Axis -0.91499202 0.40017678 0.05146017 |
| 36522 | | Axis point 0.00000000 298.33353283 -19.93137691 |
| 36523 | | Rotation angle (degrees) 106.52033984 |
| 36524 | | Shift along axis -82.21357901 |
| 36525 | | |
| 36526 | | |
| 36527 | | > fitmap #30 inMap #34 |
| 36528 | | |
| 36529 | | Fit molecule 4j87_yeast_alphaCOPI.cif (#30) to map |
| 36530 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2737 atoms |
| 36531 | | average map value = 0.009304, steps = 36 |
| 36532 | | shifted from previous position = 0.0111 |
| 36533 | | rotated from previous position = 0.0267 degrees |
| 36534 | | atoms outside contour = 1193, contour level = 0.0074676 |
| 36535 | | |
| 36536 | | Position of 4j87_yeast_alphaCOPI.cif (#30) relative to |
| 36537 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 36538 | | Matrix rotation and translation |
| 36539 | | 0.79079468 -0.51987556 0.32306840 236.68351133 |
| 36540 | | -0.42076432 -0.07839699 0.90377614 306.91406724 |
| 36541 | | -0.44452354 -0.85063701 -0.28074101 224.04067556 |
| 36542 | | Axis -0.91492583 0.40029892 0.05168648 |
| 36543 | | Axis point 0.00000000 298.37775850 -19.93102356 |
| 36544 | | Rotation angle (degrees) 106.50934092 |
| 36545 | | Shift along axis -82.11061549 |
| 36546 | | |
| 36547 | | |
| 36548 | | > show #25.1 models |
| 36549 | | |
| 36550 | | > hide #!30 models |
| 36551 | | |
| 36552 | | > hide #!25.2 models |
| 36553 | | |
| 36554 | | > hide #32.1 models |
| 36555 | | |
| 36556 | | > show #!25.2 models |
| 36557 | | |
| 36558 | | > fitmap #25.2 inMap #34 |
| 36559 | | |
| 36560 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map |
| 36561 | | relion_locres_filtered_20240326_GT.mrc (#34) using 3198 atoms |
| 36562 | | average map value = 0.01621, steps = 112 |
| 36563 | | shifted from previous position = 1.7 |
| 36564 | | rotated from previous position = 0.599 degrees |
| 36565 | | atoms outside contour = 578, contour level = 0.0074676 |
| 36566 | | |
| 36567 | | Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to |
| 36568 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 36569 | | Matrix rotation and translation |
| 36570 | | -0.50709287 0.85735527 -0.08831055 217.30498081 |
| 36571 | | -0.86097460 -0.50861215 0.00603291 405.52318744 |
| 36572 | | -0.03974347 0.07909238 0.99607471 147.10970162 |
| 36573 | | Axis 0.04246242 -0.02822735 -0.99869923 |
| 36574 | | Axis point 226.26182545 136.88589997 0.00000000 |
| 36575 | | Rotation angle (degrees) 120.65151814 |
| 36576 | | Shift along axis -149.13789725 |
| 36577 | | |
| 36578 | | |
| 36579 | | > fitmap #25.2 inMap #34 |
| 36580 | | |
| 36581 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map |
| 36582 | | relion_locres_filtered_20240326_GT.mrc (#34) using 3198 atoms |
| 36583 | | average map value = 0.01621, steps = 64 |
| 36584 | | shifted from previous position = 0.0226 |
| 36585 | | rotated from previous position = 0.0293 degrees |
| 36586 | | atoms outside contour = 579, contour level = 0.0074676 |
| 36587 | | |
| 36588 | | Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to |
| 36589 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 36590 | | Matrix rotation and translation |
| 36591 | | -0.50737829 0.85719270 -0.08824927 217.37021695 |
| 36592 | | -0.86079235 -0.50892465 0.00567549 405.57999771 |
| 36593 | | -0.04004724 0.07884392 0.99608225 147.17400146 |
| 36594 | | Axis 0.04253439 -0.02802089 -0.99870199 |
| 36595 | | Axis point 226.28039377 136.93300981 0.00000000 |
| 36596 | | Rotation angle (degrees) 120.67118058 |
| 36597 | | Shift along axis -149.10196826 |
| 36598 | | |
| 36599 | | |
| 36600 | | > hide #!25.2 models |
| 36601 | | |
| 36602 | | > show #32.1 models |
| 36603 | | |
| 36604 | | > fitmap #32.1 inMap #34 |
| 36605 | | |
| 36606 | | Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) to map |
| 36607 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2991 atoms |
| 36608 | | average map value = 0.01065, steps = 112 |
| 36609 | | shifted from previous position = 1.18 |
| 36610 | | rotated from previous position = 1.16 degrees |
| 36611 | | atoms outside contour = 1336, contour level = 0.0074676 |
| 36612 | | |
| 36613 | | Position of 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) relative to |
| 36614 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 36615 | | Matrix rotation and translation |
| 36616 | | 0.99553808 -0.07926465 0.05119619 253.51290154 |
| 36617 | | 0.06867539 0.98071735 0.18296767 192.95843243 |
| 36618 | | -0.06471186 -0.17863536 0.98178500 287.89564980 |
| 36619 | | Axis -0.88731214 0.28441859 0.36301961 |
| 36620 | | Axis point 0.00000000 1842.97375796 -962.27558149 |
| 36621 | | Rotation angle (degrees) 11.75710465 |
| 36622 | | Shift along axis -65.55234322 |
| 36623 | | |
| 36624 | | |
| 36625 | | > fitmap #32.1 inMap #34 |
| 36626 | | |
| 36627 | | Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) to map |
| 36628 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2991 atoms |
| 36629 | | average map value = 0.01065, steps = 64 |
| 36630 | | shifted from previous position = 0.0181 |
| 36631 | | rotated from previous position = 0.024 degrees |
| 36632 | | atoms outside contour = 1339, contour level = 0.0074676 |
| 36633 | | |
| 36634 | | Position of 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) relative to |
| 36635 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 36636 | | Matrix rotation and translation |
| 36637 | | 0.99554242 -0.07909544 0.05137323 253.49477224 |
| 36638 | | 0.06845565 0.98067246 0.18329032 192.96194874 |
| 36639 | | -0.06487774 -0.17895650 0.98171556 287.89837941 |
| 36640 | | Axis -0.88774154 0.28489088 0.36159665 |
| 36641 | | Axis point 0.00000000 1840.25528801 -961.24127973 |
| 36642 | | Rotation angle (degrees) 11.77255744 |
| 36643 | | Shift along axis -65.96165180 |
| 36644 | | |
| 36645 | | |
| 36646 | | > fitmap #32.1 inMap #34 |
| 36647 | | |
| 36648 | | Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) to map |
| 36649 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2991 atoms |
| 36650 | | average map value = 0.01065, steps = 44 |
| 36651 | | shifted from previous position = 0.0378 |
| 36652 | | rotated from previous position = 0.0375 degrees |
| 36653 | | atoms outside contour = 1338, contour level = 0.0074676 |
| 36654 | | |
| 36655 | | Position of 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) relative to |
| 36656 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 36657 | | Matrix rotation and translation |
| 36658 | | 0.99552861 -0.07954903 0.05093861 253.51313438 |
| 36659 | | 0.06899044 0.98066323 0.18313913 192.97734679 |
| 36660 | | -0.06452217 -0.17880596 0.98176643 287.91470617 |
| 36661 | | Axis -0.88729246 0.28304702 0.36413799 |
| 36662 | | Axis point 0.00000000 1841.49762982 -960.48331793 |
| 36663 | | Rotation angle (degrees) 11.76864994 |
| 36664 | | Shift along axis -65.47794715 |
| 36665 | | |
| 36666 | | |
| 36667 | | > hide #32.1 models |
| 36668 | | |
| 36669 | | > show #!25.2 models |
| 36670 | | |
| 36671 | | > hide #!25.2 models |
| 36672 | | |
| 36673 | | > show #4 models |
| 36674 | | |
| 36675 | | > fitmap #4 inMap #34 |
| 36676 | | |
| 36677 | | Fit molecule CopB_Q9JIF7.pdb (#4) to map |
| 36678 | | relion_locres_filtered_20240326_GT.mrc (#34) using 7501 atoms |
| 36679 | | average map value = 0.007457, steps = 84 |
| 36680 | | shifted from previous position = 0.00986 |
| 36681 | | rotated from previous position = 0.0149 degrees |
| 36682 | | atoms outside contour = 4418, contour level = 0.0074676 |
| 36683 | | |
| 36684 | | Position of CopB_Q9JIF7.pdb (#4) relative to |
| 36685 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 36686 | | Matrix rotation and translation |
| 36687 | | -0.01692687 -0.69781792 0.71607516 219.88635890 |
| 36688 | | -0.07055059 0.71522626 0.69532295 243.07545144 |
| 36689 | | -0.99736457 -0.03874988 -0.06133800 272.75720508 |
| 36690 | | Axis -0.37323686 0.87119266 0.31893196 |
| 36691 | | Axis point 259.29199268 0.00000000 -51.78350649 |
| 36692 | | Rotation angle (degrees) 100.45826756 |
| 36693 | | Shift along axis 216.68684493 |
| 36694 | | |
| 36695 | | |
| 36696 | | > hide #4 models |
| 36697 | | |
| 36698 | | > show #!25.2 models |
| 36699 | | |
| 36700 | | > show #25.3 models |
| 36701 | | |
| 36702 | | > fitmap #25.3 inMap #34 |
| 36703 | | |
| 36704 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map |
| 36705 | | relion_locres_filtered_20240326_GT.mrc (#34) using 3371 atoms |
| 36706 | | average map value = 0.01534, steps = 84 |
| 36707 | | shifted from previous position = 0.664 |
| 36708 | | rotated from previous position = 0.704 degrees |
| 36709 | | atoms outside contour = 522, contour level = 0.0074676 |
| 36710 | | |
| 36711 | | Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to |
| 36712 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 36713 | | Matrix rotation and translation |
| 36714 | | -0.47952602 0.87307180 -0.08831997 209.44256838 |
| 36715 | | -0.87665218 -0.48110979 0.00378334 404.39983371 |
| 36716 | | -0.03918847 0.07924011 0.99608496 146.36841160 |
| 36717 | | Axis 0.04306796 -0.02804246 -0.99867851 |
| 36718 | | Axis point 226.30279310 136.28079993 0.00000000 |
| 36719 | | Rotation angle (degrees) 118.83411947 |
| 36720 | | Shift along axis -148.49509082 |
| 36721 | | |
| 36722 | | |
| 36723 | | > fitmap #25.3 inMap #34 |
| 36724 | | |
| 36725 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map |
| 36726 | | relion_locres_filtered_20240326_GT.mrc (#34) using 3371 atoms |
| 36727 | | average map value = 0.01534, steps = 44 |
| 36728 | | shifted from previous position = 0.00967 |
| 36729 | | rotated from previous position = 0.00924 degrees |
| 36730 | | atoms outside contour = 522, contour level = 0.0074676 |
| 36731 | | |
| 36732 | | Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to |
| 36733 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 36734 | | Matrix rotation and translation |
| 36735 | | -0.47945371 0.87310077 -0.08842613 209.44463068 |
| 36736 | | -0.87668580 -0.48104930 0.00368385 404.41695980 |
| 36737 | | -0.03932096 0.07928817 0.99607592 146.39029199 |
| 36738 | | Axis 0.04315051 -0.02802635 -0.99867540 |
| 36739 | | Axis point 226.32606671 136.28067031 0.00000000 |
| 36740 | | Rotation angle (degrees) 118.83007225 |
| 36741 | | Shift along axis -148.49307228 |
| 36742 | | |
| 36743 | | |
| 36744 | | > hide #25.3 models |
| 36745 | | |
| 36746 | | > show #25.3 models |
| 36747 | | |
| 36748 | | > hide #25.3 models |
| 36749 | | |
| 36750 | | > show #25.3 models |
| 36751 | | |
| 36752 | | > hide #27.1 models |
| 36753 | | |
| 36754 | | > show #27.1 models |
| 36755 | | |
| 36756 | | > hide #27.1 models |
| 36757 | | |
| 36758 | | > fitmap #27.1 inMap #34 |
| 36759 | | |
| 36760 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 36761 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms |
| 36762 | | average map value = 0.008658, steps = 64 |
| 36763 | | shifted from previous position = 1.03 |
| 36764 | | rotated from previous position = 1.81 degrees |
| 36765 | | atoms outside contour = 3144, contour level = 0.0074676 |
| 36766 | | |
| 36767 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to |
| 36768 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 36769 | | Matrix rotation and translation |
| 36770 | | 0.99803851 -0.02181724 0.05867833 -72.22086949 |
| 36771 | | 0.02067138 0.99958497 0.02006446 -76.16555965 |
| 36772 | | -0.05909172 -0.01881214 0.99807528 -69.82650088 |
| 36773 | | Axis -0.29654810 0.89834191 0.32410034 |
| 36774 | | Axis point -850.35345607 0.00000000 1554.29607241 |
| 36775 | | Rotation angle (degrees) 3.75835093 |
| 36776 | | Shift along axis -69.63654543 |
| 36777 | | |
| 36778 | | |
| 36779 | | > show #27.1 models |
| 36780 | | |
| 36781 | | > hide #27.1 models |
| 36782 | | |
| 36783 | | > show #27.1 models |
| 36784 | | |
| 36785 | | > hide #27.1 models |
| 36786 | | |
| 36787 | | > hide #!25.4 models |
| 36788 | | |
| 36789 | | > show #!25.4 models |
| 36790 | | |
| 36791 | | > hide #!25.4 models |
| 36792 | | |
| 36793 | | > show #!25.4 models |
| 36794 | | |
| 36795 | | > fitmap #25.4 inMap #34 |
| 36796 | | |
| 36797 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif D (#25.4) to map |
| 36798 | | relion_locres_filtered_20240326_GT.mrc (#34) using 706 atoms |
| 36799 | | average map value = 0.01592, steps = 80 |
| 36800 | | shifted from previous position = 0.636 |
| 36801 | | rotated from previous position = 0.772 degrees |
| 36802 | | atoms outside contour = 40, contour level = 0.0074676 |
| 36803 | | |
| 36804 | | Position of 5nzr_COPI_coat_leaf_2017.cif D (#25.4) relative to |
| 36805 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 36806 | | Matrix rotation and translation |
| 36807 | | -0.50259492 0.85687248 -0.11475140 219.26231166 |
| 36808 | | -0.86423372 -0.50140934 0.04109425 401.64865313 |
| 36809 | | -0.02232489 0.11982579 0.99254389 141.09944210 |
| 36810 | | Axis 0.04563133 -0.05356868 -0.99752102 |
| 36811 | | Axis point 225.86212363 132.07231659 0.00000000 |
| 36812 | | Rotation angle (degrees) 120.37983597 |
| 36813 | | Shift along axis -152.26021475 |
| 36814 | | |
| 36815 | | |
| 36816 | | > fitmap #25.4 inMap #34 |
| 36817 | | |
| 36818 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif D (#25.4) to map |
| 36819 | | relion_locres_filtered_20240326_GT.mrc (#34) using 706 atoms |
| 36820 | | average map value = 0.01592, steps = 28 |
| 36821 | | shifted from previous position = 0.0373 |
| 36822 | | rotated from previous position = 0.0643 degrees |
| 36823 | | atoms outside contour = 40, contour level = 0.0074676 |
| 36824 | | |
| 36825 | | Position of 5nzr_COPI_coat_leaf_2017.cif D (#25.4) relative to |
| 36826 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 36827 | | Matrix rotation and translation |
| 36828 | | -0.50212529 0.85727199 -0.11381966 219.06728753 |
| 36829 | | -0.86451661 -0.50093569 0.04092016 401.63147027 |
| 36830 | | -0.02193662 0.11894603 0.99265836 141.09360375 |
| 36831 | | Axis 0.04520610 -0.05323457 -0.99755826 |
| 36832 | | Axis point 225.82056137 132.11900207 0.00000000 |
| 36833 | | Rotation angle (degrees) 120.34471710 |
| 36834 | | Shift along axis -152.22659262 |
| 36835 | | |
| 36836 | | |
| 36837 | | > show #25.5 models |
| 36838 | | |
| 36839 | | > fitmap #25.5 inMap #34 |
| 36840 | | |
| 36841 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif F (#25.5) to map |
| 36842 | | relion_locres_filtered_20240326_GT.mrc (#34) using 635 atoms |
| 36843 | | average map value = 0.008629, steps = 108 |
| 36844 | | shifted from previous position = 2.52 |
| 36845 | | rotated from previous position = 6.05 degrees |
| 36846 | | atoms outside contour = 338, contour level = 0.0074676 |
| 36847 | | |
| 36848 | | Position of 5nzr_COPI_coat_leaf_2017.cif F (#25.5) relative to |
| 36849 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 36850 | | Matrix rotation and translation |
| 36851 | | -0.74390514 0.41955755 0.52016977 246.08931688 |
| 36852 | | -0.36884298 -0.90684067 0.20394814 333.22564308 |
| 36853 | | 0.55727909 -0.04014290 0.82935430 68.10850364 |
| 36854 | | Axis -0.29545411 -0.04491808 -0.95430039 |
| 36855 | | Axis point 149.46993327 142.24417457 0.00000000 |
| 36856 | | Rotation angle (degrees) 155.60167823 |
| 36857 | | Shift along axis -152.67192692 |
| 36858 | | |
| 36859 | | |
| 36860 | | > show #5 models |
| 36861 | | |
| 36862 | | > hide #5 models |
| 36863 | | |
| 36864 | | > show #5 models |
| 36865 | | |
| 36866 | | > hide #25.5 models |
| 36867 | | |
| 36868 | | > show #25.5 models |
| 36869 | | |
| 36870 | | > hide #25.5 models |
| 36871 | | |
| 36872 | | > show #!25.6 models |
| 36873 | | |
| 36874 | | > fitmap #25.6 inMap #34 |
| 36875 | | |
| 36876 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif G (#25.6) to map |
| 36877 | | relion_locres_filtered_20240326_GT.mrc (#34) using 3190 atoms |
| 36878 | | average map value = 0.01344, steps = 84 |
| 36879 | | shifted from previous position = 0.406 |
| 36880 | | rotated from previous position = 0.865 degrees |
| 36881 | | atoms outside contour = 1483, contour level = 0.0074676 |
| 36882 | | |
| 36883 | | Position of 5nzr_COPI_coat_leaf_2017.cif G (#25.6) relative to |
| 36884 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 36885 | | Matrix rotation and translation |
| 36886 | | -0.57147431 0.81988072 -0.03482392 221.54231101 |
| 36887 | | -0.81988901 -0.57224165 -0.01793004 410.33209307 |
| 36888 | | -0.03462819 0.01830519 0.99923260 151.13544845 |
| 36889 | | Axis 0.02209236 -0.00011934 -0.99975593 |
| 36890 | | Axis point 219.47770757 146.52154587 0.00000000 |
| 36891 | | Rotation angle (degrees) 124.90669341 |
| 36892 | | Shift along axis -146.25313402 |
| 36893 | | |
| 36894 | | |
| 36895 | | > fitmap #25.6 inMap #34 |
| 36896 | | |
| 36897 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif G (#25.6) to map |
| 36898 | | relion_locres_filtered_20240326_GT.mrc (#34) using 3190 atoms |
| 36899 | | average map value = 0.01344, steps = 48 |
| 36900 | | shifted from previous position = 0.0123 |
| 36901 | | rotated from previous position = 0.0426 degrees |
| 36902 | | atoms outside contour = 1483, contour level = 0.0074676 |
| 36903 | | |
| 36904 | | Position of 5nzr_COPI_coat_leaf_2017.cif G (#25.6) relative to |
| 36905 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 36906 | | Matrix rotation and translation |
| 36907 | | -0.57128690 0.82001501 -0.03473701 221.50468882 |
| 36908 | | -0.82004569 -0.57203843 -0.01723646 410.23469118 |
| 36909 | | -0.03400507 0.01863897 0.99924783 151.05061499 |
| 36910 | | Axis 0.02186922 -0.00044619 -0.99976074 |
| 36911 | | Axis point 219.43497350 146.44850987 0.00000000 |
| 36912 | | Rotation angle (degrees) 124.89251663 |
| 36913 | | Shift along axis -146.35338032 |
| 36914 | | |
| 36915 | | |
| 36916 | | > fitmap #25.7 inMap #34 |
| 36917 | | |
| 36918 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif K (#25.7) to map |
| 36919 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2239 atoms |
| 36920 | | average map value = 0.01256, steps = 52 |
| 36921 | | shifted from previous position = 1.07 |
| 36922 | | rotated from previous position = 0.975 degrees |
| 36923 | | atoms outside contour = 1129, contour level = 0.0074676 |
| 36924 | | |
| 36925 | | Position of 5nzr_COPI_coat_leaf_2017.cif K (#25.7) relative to |
| 36926 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 36927 | | Matrix rotation and translation |
| 36928 | | -0.55272261 0.83288176 -0.02838457 218.72191943 |
| 36929 | | -0.83335224 -0.55220263 0.02441902 405.50722908 |
| 36930 | | 0.00466412 0.03715129 0.99929876 143.32138373 |
| 36931 | | Axis 0.00763962 -0.01982989 -0.99977418 |
| 36932 | | Axis point 217.94279070 142.32445254 0.00000000 |
| 36933 | | Rotation angle (degrees) 123.56022805 |
| 36934 | | Shift along axis -149.65922830 |
| 36935 | | |
| 36936 | | |
| 36937 | | > fitmap #25.7 inMap #34 |
| 36938 | | |
| 36939 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif K (#25.7) to map |
| 36940 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2239 atoms |
| 36941 | | average map value = 0.01256, steps = 48 |
| 36942 | | shifted from previous position = 0.00983 |
| 36943 | | rotated from previous position = 0.0758 degrees |
| 36944 | | atoms outside contour = 1127, contour level = 0.0074676 |
| 36945 | | |
| 36946 | | Position of 5nzr_COPI_coat_leaf_2017.cif K (#25.7) relative to |
| 36947 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 36948 | | Matrix rotation and translation |
| 36949 | | -0.55336415 0.83247015 -0.02795643 218.83773390 |
| 36950 | | -0.83292953 -0.55288209 0.02344748 405.67633701 |
| 36951 | | 0.00406271 0.03626073 0.99933410 143.56168250 |
| 36952 | | Axis 0.00769215 -0.01922198 -0.99978565 |
| 36953 | | Axis point 217.97393466 142.47245648 0.00000000 |
| 36954 | | Rotation angle (degrees) 123.60443854 |
| 36955 | | Shift along axis -149.64548098 |
| 36956 | | |
| 36957 | | |
| 36958 | | > fitmap #25.7 inMap #34 |
| 36959 | | |
| 36960 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif K (#25.7) to map |
| 36961 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2239 atoms |
| 36962 | | average map value = 0.01256, steps = 44 |
| 36963 | | shifted from previous position = 0.013 |
| 36964 | | rotated from previous position = 0.027 degrees |
| 36965 | | atoms outside contour = 1127, contour level = 0.0074676 |
| 36966 | | |
| 36967 | | Position of 5nzr_COPI_coat_leaf_2017.cif K (#25.7) relative to |
| 36968 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 36969 | | Matrix rotation and translation |
| 36970 | | -0.55355150 0.83234120 -0.02808664 218.90273150 |
| 36971 | | -0.83280689 -0.55308296 0.02306328 405.73589241 |
| 36972 | | 0.00366228 0.03615745 0.99933939 143.63218421 |
| 36973 | | Axis 0.00786200 -0.01906267 -0.99978738 |
| 36974 | | Axis point 218.01141751 142.50521368 0.00000000 |
| 36975 | | Rotation angle (degrees) 123.61761083 |
| 36976 | | Shift along axis -149.61504017 |
| 36977 | | |
| 36978 | | |
| 36979 | | > hide #25.8 models |
| 36980 | | |
| 36981 | | > show #25.8 models |
| 36982 | | |
| 36983 | | > fitmap #25.8 inMap #34 |
| 36984 | | |
| 36985 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif L (#25.8) to map |
| 36986 | | relion_locres_filtered_20240326_GT.mrc (#34) using 555 atoms |
| 36987 | | average map value = 0.01074, steps = 80 |
| 36988 | | shifted from previous position = 0.588 |
| 36989 | | rotated from previous position = 3.23 degrees |
| 36990 | | atoms outside contour = 145, contour level = 0.0074676 |
| 36991 | | |
| 36992 | | Position of 5nzr_COPI_coat_leaf_2017.cif L (#25.8) relative to |
| 36993 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 36994 | | Matrix rotation and translation |
| 36995 | | -0.50467604 0.86246487 -0.03816319 206.27513790 |
| 36996 | | -0.86298707 -0.50520155 -0.00497054 404.78071206 |
| 36997 | | -0.02356702 0.03042583 0.99925915 148.79813129 |
| 36998 | | Axis 0.02050921 -0.00845725 -0.99975389 |
| 36999 | | Axis point 220.35656340 141.75148805 0.00000000 |
| 37000 | | Rotation angle (degrees) 120.35188135 |
| 37001 | | Shift along axis -147.95430385 |
| 37002 | | |
| 37003 | | |
| 37004 | | > fitmap #25.8 inMap #34 |
| 37005 | | |
| 37006 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif L (#25.8) to map |
| 37007 | | relion_locres_filtered_20240326_GT.mrc (#34) using 555 atoms |
| 37008 | | average map value = 0.01074, steps = 28 |
| 37009 | | shifted from previous position = 0.0403 |
| 37010 | | rotated from previous position = 0.073 degrees |
| 37011 | | atoms outside contour = 143, contour level = 0.0074676 |
| 37012 | | |
| 37013 | | Position of 5nzr_COPI_coat_leaf_2017.cif L (#25.8) relative to |
| 37014 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 37015 | | Matrix rotation and translation |
| 37016 | | -0.50517247 0.86222276 -0.03704961 206.30150521 |
| 37017 | | -0.86270534 -0.50567988 -0.00522873 404.82655458 |
| 37018 | | -0.02324358 0.02932149 0.99929974 148.95156873 |
| 37019 | | Axis 0.02002529 -0.00800197 -0.99976745 |
| 37020 | | Axis point 220.29338844 141.85869129 0.00000000 |
| 37021 | | Rotation angle (degrees) 120.38289886 |
| 37022 | | Shift along axis -148.02509348 |
| 37023 | | |
| 37024 | | |
| 37025 | | > fitmap #25.9 inMap #34 |
| 37026 | | |
| 37027 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif M (#25.9) to map |
| 37028 | | relion_locres_filtered_20240326_GT.mrc (#34) using 635 atoms |
| 37029 | | average map value = 0.01577, steps = 124 |
| 37030 | | shifted from previous position = 0.71 |
| 37031 | | rotated from previous position = 2.19 degrees |
| 37032 | | atoms outside contour = 69, contour level = 0.0074676 |
| 37033 | | |
| 37034 | | Position of 5nzr_COPI_coat_leaf_2017.cif M (#25.9) relative to |
| 37035 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 37036 | | Matrix rotation and translation |
| 37037 | | -0.53966745 0.84095711 0.03937224 209.53471555 |
| 37038 | | -0.84152726 -0.54020254 0.00361411 405.93665350 |
| 37039 | | 0.02430829 -0.03118240 0.99921807 152.45933187 |
| 37040 | | Axis -0.02067637 0.00895112 -0.99974615 |
| 37041 | | Axis point 214.47181659 147.26852788 0.00000000 |
| 37042 | | Rotation angle (degrees) 122.70583146 |
| 37043 | | Shift along axis -153.11946032 |
| 37044 | | |
| 37045 | | |
| 37046 | | > fitmap #25.9 inMap #34 |
| 37047 | | |
| 37048 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif M (#25.9) to map |
| 37049 | | relion_locres_filtered_20240326_GT.mrc (#34) using 635 atoms |
| 37050 | | average map value = 0.01577, steps = 76 |
| 37051 | | shifted from previous position = 0.0109 |
| 37052 | | rotated from previous position = 0.0634 degrees |
| 37053 | | atoms outside contour = 71, contour level = 0.0074676 |
| 37054 | | |
| 37055 | | Position of 5nzr_COPI_coat_leaf_2017.cif M (#25.9) relative to |
| 37056 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 37057 | | Matrix rotation and translation |
| 37058 | | -0.54017038 0.84066532 0.03870098 209.70718956 |
| 37059 | | -0.84123061 -0.54066853 0.00293096 406.05692255 |
| 37060 | | 0.02338836 -0.03097324 0.99924653 152.52956116 |
| 37061 | | Axis -0.02015339 0.00910216 -0.99975547 |
| 37062 | | Axis point 214.56120528 147.30897566 0.00000000 |
| 37063 | | Rotation angle (degrees) 122.73785558 |
| 37064 | | Shift along axis -153.02257931 |
| 37065 | | |
| 37066 | | |
| 37067 | | > show #25.10 models |
| 37068 | | |
| 37069 | | > fitmap #25.10 inMap #34 |
| 37070 | | |
| 37071 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif R (#25.10) to map |
| 37072 | | relion_locres_filtered_20240326_GT.mrc (#34) using 635 atoms |
| 37073 | | average map value = 0.01241, steps = 88 |
| 37074 | | shifted from previous position = 1.33 |
| 37075 | | rotated from previous position = 3.32 degrees |
| 37076 | | atoms outside contour = 194, contour level = 0.0074676 |
| 37077 | | |
| 37078 | | Position of 5nzr_COPI_coat_leaf_2017.cif R (#25.10) relative to |
| 37079 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 37080 | | Matrix rotation and translation |
| 37081 | | -0.57909157 0.81427968 -0.04001926 223.95348284 |
| 37082 | | -0.80966806 -0.58016521 -0.08857739 418.65309158 |
| 37083 | | -0.09534455 -0.01889210 0.99526504 159.84091487 |
| 37084 | | Axis 0.04284677 0.03401737 -0.99850236 |
| 37085 | | Axis point 224.35627291 152.90637180 0.00000000 |
| 37086 | | Rotation angle (degrees) 125.59104470 |
| 37087 | | Shift along axis -135.76437017 |
| 37088 | | |
| 37089 | | |
| 37090 | | > fitmap #25.10 inMap #34 |
| 37091 | | |
| 37092 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif R (#25.10) to map |
| 37093 | | relion_locres_filtered_20240326_GT.mrc (#34) using 635 atoms |
| 37094 | | average map value = 0.0124, steps = 180 |
| 37095 | | shifted from previous position = 0.00625 |
| 37096 | | rotated from previous position = 0.0139 degrees |
| 37097 | | atoms outside contour = 194, contour level = 0.0074676 |
| 37098 | | |
| 37099 | | Position of 5nzr_COPI_coat_leaf_2017.cif R (#25.10) relative to |
| 37100 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 37101 | | Matrix rotation and translation |
| 37102 | | -0.57903412 0.81432513 -0.03992575 223.92618448 |
| 37103 | | -0.80969492 -0.58009510 -0.08879070 418.66701441 |
| 37104 | | -0.09546523 -0.01908517 0.99524978 159.88432576 |
| 37105 | | Axis 0.04285711 0.03414738 -0.99849748 |
| 37106 | | Axis point 224.36219273 152.92599870 0.00000000 |
| 37107 | | Rotation angle (degrees) 125.58708831 |
| 37108 | | Shift along axis -135.75088596 |
| 37109 | | |
| 37110 | | |
| 37111 | | > fitmap #25.11 inMap #34 |
| 37112 | | |
| 37113 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif Z (#25.11) to map |
| 37114 | | relion_locres_filtered_20240326_GT.mrc (#34) using 555 atoms |
| 37115 | | average map value = 0.01758, steps = 52 |
| 37116 | | shifted from previous position = 0.864 |
| 37117 | | rotated from previous position = 2.13 degrees |
| 37118 | | atoms outside contour = 29, contour level = 0.0074676 |
| 37119 | | |
| 37120 | | Position of 5nzr_COPI_coat_leaf_2017.cif Z (#25.11) relative to |
| 37121 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 37122 | | Matrix rotation and translation |
| 37123 | | -0.54661403 0.83480638 -0.06566128 221.77840345 |
| 37124 | | -0.83696530 -0.54713943 0.01129254 405.31468918 |
| 37125 | | -0.02649879 0.06112887 0.99777806 145.35185938 |
| 37126 | | Axis 0.02978909 -0.02340892 -0.99928206 |
| 37127 | | Axis point 221.70681989 139.79750674 0.00000000 |
| 37128 | | Rotation angle (degrees) 123.22907022 |
| 37129 | | Shift along axis -148.12890886 |
| 37130 | | |
| 37131 | | |
| 37132 | | > hide #25.11 models |
| 37133 | | |
| 37134 | | > show #25.11 models |
| 37135 | | |
| 37136 | | > hide #25.8 models |
| 37137 | | |
| 37138 | | > show #25.8 models |
| 37139 | | |
| 37140 | | > hide #31.1 models |
| 37141 | | |
| 37142 | | > show #31.1 models |
| 37143 | | |
| 37144 | | > fitmap #31.1 inMap #34 |
| 37145 | | |
| 37146 | | Fit molecule 5mc7_human_zeta1COPI.cif A (#31.1) to map |
| 37147 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1187 atoms |
| 37148 | | average map value = 0.01025, steps = 52 |
| 37149 | | shifted from previous position = 0.845 |
| 37150 | | rotated from previous position = 1.26 degrees |
| 37151 | | atoms outside contour = 483, contour level = 0.0074676 |
| 37152 | | |
| 37153 | | Position of 5mc7_human_zeta1COPI.cif A (#31.1) relative to |
| 37154 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 37155 | | Matrix rotation and translation |
| 37156 | | 0.97543397 0.21971428 -0.01594367 223.15831279 |
| 37157 | | -0.21945560 0.97548294 0.01650070 253.44359243 |
| 37158 | | 0.01917822 -0.01259642 0.99973673 253.90331968 |
| 37159 | | Axis -0.06590038 -0.07954554 -0.99465052 |
| 37160 | | Axis point 1140.29145699 -801.97494212 0.00000000 |
| 37161 | | Rotation angle (degrees) 12.75402354 |
| 37162 | | Shift along axis -287.41159217 |
| 37163 | | |
| 37164 | | |
| 37165 | | > fitmap #31.1 inMap #34 |
| 37166 | | |
| 37167 | | Fit molecule 5mc7_human_zeta1COPI.cif A (#31.1) to map |
| 37168 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1187 atoms |
| 37169 | | average map value = 0.01025, steps = 28 |
| 37170 | | shifted from previous position = 0.0388 |
| 37171 | | rotated from previous position = 0.107 degrees |
| 37172 | | atoms outside contour = 484, contour level = 0.0074676 |
| 37173 | | |
| 37174 | | Position of 5mc7_human_zeta1COPI.cif A (#31.1) relative to |
| 37175 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 37176 | | Matrix rotation and translation |
| 37177 | | 0.97529083 0.22021143 -0.01774054 223.17848705 |
| 37178 | | -0.21993270 0.97537725 0.01639591 253.48098162 |
| 37179 | | 0.02091429 -0.01208906 0.99970818 253.85881041 |
| 37180 | | Axis -0.06433566 -0.08730514 -0.99410197 |
| 37181 | | Axis point 1127.72585108 -802.54669976 0.00000000 |
| 37182 | | Rotation angle (degrees) 12.78996814 |
| 37183 | | Shift along axis -288.85007223 |
| 37184 | | |
| 37185 | | |
| 37186 | | > hide #31.1 models |
| 37187 | | |
| 37188 | | > show #32.2 models |
| 37189 | | |
| 37190 | | > hide #32.2 models |
| 37191 | | |
| 37192 | | > show #32.2 models |
| 37193 | | |
| 37194 | | > hide #32.2 models |
| 37195 | | |
| 37196 | | > show #32.2 models |
| 37197 | | |
| 37198 | | > fitmap #32.2 inMap #34 |
| 37199 | | |
| 37200 | | Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif B (#32.2) to map |
| 37201 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1222 atoms |
| 37202 | | average map value = 0.00967, steps = 68 |
| 37203 | | shifted from previous position = 0.749 |
| 37204 | | rotated from previous position = 3.7 degrees |
| 37205 | | atoms outside contour = 496, contour level = 0.0074676 |
| 37206 | | |
| 37207 | | Position of 5mu7_Thermophila_beta_deltaCOPI.cif B (#32.2) relative to |
| 37208 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 37209 | | Matrix rotation and translation |
| 37210 | | 0.97959844 0.04140448 0.19665342 249.12109135 |
| 37211 | | -0.05617405 0.99595505 0.07012851 194.53555530 |
| 37212 | | -0.19295433 -0.07974459 0.97796187 284.10527219 |
| 37213 | | Axis -0.34960471 0.90882688 -0.22761866 |
| 37214 | | Axis point 1632.36086288 0.00000000 -1141.96661413 |
| 37215 | | Rotation angle (degrees) 12.37719153 |
| 37216 | | Shift along axis 25.03757364 |
| 37217 | | |
| 37218 | | |
| 37219 | | > fitmap #32.2 inMap #34 |
| 37220 | | |
| 37221 | | Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif B (#32.2) to map |
| 37222 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1222 atoms |
| 37223 | | average map value = 0.009669, steps = 40 |
| 37224 | | shifted from previous position = 0.0174 |
| 37225 | | rotated from previous position = 0.0299 degrees |
| 37226 | | atoms outside contour = 497, contour level = 0.0074676 |
| 37227 | | |
| 37228 | | Position of 5mu7_Thermophila_beta_deltaCOPI.cif B (#32.2) relative to |
| 37229 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 37230 | | Matrix rotation and translation |
| 37231 | | 0.97962421 0.04168681 0.19646529 249.12134924 |
| 37232 | | -0.05651158 0.99591229 0.07046386 194.54450077 |
| 37233 | | -0.19272478 -0.08013067 0.97797558 284.11629865 |
| 37234 | | Axis -0.35127532 0.90782087 -0.22905658 |
| 37235 | | Axis point 1633.21810015 0.00000000 -1141.58497569 |
| 37236 | | Rotation angle (degrees) 12.37763046 |
| 37237 | | Shift along axis 24.02266830 |
| 37238 | | |
| 37239 | | |
| 37240 | | > hide #32.2 models |
| 37241 | | |
| 37242 | | > show #32.1 models |
| 37243 | | |
| 37244 | | > fitmap #32.1 inMap #34 |
| 37245 | | |
| 37246 | | Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) to map |
| 37247 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2991 atoms |
| 37248 | | average map value = 0.01065, steps = 76 |
| 37249 | | shifted from previous position = 0.00598 |
| 37250 | | rotated from previous position = 0.0249 degrees |
| 37251 | | atoms outside contour = 1338, contour level = 0.0074676 |
| 37252 | | |
| 37253 | | Position of 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) relative to |
| 37254 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 37255 | | Matrix rotation and translation |
| 37256 | | 0.99549389 -0.07975464 0.05129444 253.51897719 |
| 37257 | | 0.06913771 0.98067704 0.18300962 192.97132986 |
| 37258 | | -0.06489914 -0.17863858 0.98177205 287.91294533 |
| 37259 | | Axis -0.88640516 0.28479221 0.36493737 |
| 37260 | | Axis point 0.00000000 1841.88880018 -960.63155214 |
| 37261 | | Rotation angle (degrees) 11.77079789 |
| 37262 | | Shift along axis -64.69360508 |
| 37263 | | |
| 37264 | | |
| 37265 | | > fitmap #32.1 inMap #34 |
| 37266 | | |
| 37267 | | Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) to map |
| 37268 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2991 atoms |
| 37269 | | average map value = 0.01065, steps = 64 |
| 37270 | | shifted from previous position = 0.0276 |
| 37271 | | rotated from previous position = 0.0516 degrees |
| 37272 | | atoms outside contour = 1340, contour level = 0.0074676 |
| 37273 | | |
| 37274 | | Position of 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) relative to |
| 37275 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 37276 | | Matrix rotation and translation |
| 37277 | | 0.99555213 -0.07911083 0.05116079 253.49467224 |
| 37278 | | 0.06848984 0.98061581 0.18358045 192.96529574 |
| 37279 | | -0.06469228 -0.17925991 0.98167245 287.91864772 |
| 37280 | | Axis -0.88825599 0.28361561 0.36133569 |
| 37281 | | Axis point 0.00000000 1838.11694158 -959.62478426 |
| 37282 | | Rotation angle (degrees) 11.78519610 |
| 37283 | | Shift along axis -66.40491008 |
| 37284 | | |
| 37285 | | |
| 37286 | | > hide #32.1 models |
| 37287 | | |
| 37288 | | > show #31.1 models |
| 37289 | | |
| 37290 | | > hide #31.1 models |
| 37291 | | |
| 37292 | | > show #31.1 models |
| 37293 | | |
| 37294 | | > hide #31.1 models |
| 37295 | | |
| 37296 | | > show #31.1 models |
| 37297 | | |
| 37298 | | > hide #31.1 models |
| 37299 | | |
| 37300 | | > show #31.1 models |
| 37301 | | |
| 37302 | | > fitmap #31.1 inMap #34 |
| 37303 | | |
| 37304 | | Fit molecule 5mc7_human_zeta1COPI.cif A (#31.1) to map |
| 37305 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1187 atoms |
| 37306 | | average map value = 0.01025, steps = 40 |
| 37307 | | shifted from previous position = 0.025 |
| 37308 | | rotated from previous position = 0.0414 degrees |
| 37309 | | atoms outside contour = 483, contour level = 0.0074676 |
| 37310 | | |
| 37311 | | Position of 5mc7_human_zeta1COPI.cif A (#31.1) relative to |
| 37312 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 37313 | | Matrix rotation and translation |
| 37314 | | 0.97536139 0.21995150 -0.01707324 223.17039763 |
| 37315 | | -0.21968240 0.97543492 0.01632075 253.45807998 |
| 37316 | | 0.02024361 -0.01216794 0.99972103 253.88051004 |
| 37317 | | Axis -0.06443458 -0.08440176 -0.99434628 |
| 37318 | | Axis point 1132.84099748 -803.30257695 0.00000000 |
| 37319 | | Rotation angle (degrees) 12.77169891 |
| 37320 | | Shift along axis -288.21733823 |
| 37321 | | |
| 37322 | | |
| 37323 | | > fitmap #31.1 inMap #34 |
| 37324 | | |
| 37325 | | Fit molecule 5mc7_human_zeta1COPI.cif A (#31.1) to map |
| 37326 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1187 atoms |
| 37327 | | average map value = 0.01025, steps = 28 |
| 37328 | | shifted from previous position = 0.034 |
| 37329 | | rotated from previous position = 0.0637 degrees |
| 37330 | | atoms outside contour = 488, contour level = 0.0074676 |
| 37331 | | |
| 37332 | | Position of 5mc7_human_zeta1COPI.cif A (#31.1) relative to |
| 37333 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 37334 | | Matrix rotation and translation |
| 37335 | | 0.97526637 0.22028822 -0.01812743 223.18295814 |
| 37336 | | -0.22000553 0.97536137 0.01636331 253.48943051 |
| 37337 | | 0.02128544 -0.01197045 0.99970177 253.84909039 |
| 37338 | | Axis -0.06396440 -0.08897586 -0.99397779 |
| 37339 | | Axis point 1125.16763021 -802.84882228 0.00000000 |
| 37340 | | Rotation angle (degrees) 12.79601525 |
| 37341 | | Shift along axis -289.15056334 |
| 37342 | | |
| 37343 | | |
| 37344 | | > fitmap #31.1 inMap #34 |
| 37345 | | |
| 37346 | | Fit molecule 5mc7_human_zeta1COPI.cif A (#31.1) to map |
| 37347 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1187 atoms |
| 37348 | | average map value = 0.01025, steps = 36 |
| 37349 | | shifted from previous position = 0.00784 |
| 37350 | | rotated from previous position = 0.0335 degrees |
| 37351 | | atoms outside contour = 487, contour level = 0.0074676 |
| 37352 | | |
| 37353 | | Position of 5mc7_human_zeta1COPI.cif A (#31.1) relative to |
| 37354 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 37355 | | Matrix rotation and translation |
| 37356 | | 0.97532297 0.21999563 -0.01862878 223.18772395 |
| 37357 | | -0.21970776 0.97542913 0.01632549 253.47880020 |
| 37358 | | 0.02176259 -0.01182974 0.99969318 253.84507105 |
| 37359 | | Axis -0.06363463 -0.09128996 -0.99378910 |
| 37360 | | Axis point 1123.37013789 -804.72959050 0.00000000 |
| 37361 | | Rotation angle (degrees) 12.78103464 |
| 37362 | | Shift along axis -289.61100380 |
| 37363 | | |
| 37364 | | |
| 37365 | | > hide #31.1 models |
| 37366 | | |
| 37367 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 37368 | | > dataset/Chimera sessions/20240326_leaf_fitting_v12.cxs" |
| 37369 | | |
| 37370 | | > hide #!9 models |
| 37371 | | |
| 37372 | | > show #!9 models |
| 37373 | | |
| 37374 | | > hide #!9 models |
| 37375 | | |
| 37376 | | > show #!9 models |
| 37377 | | |
| 37378 | | > hide #!9 models |
| 37379 | | |
| 37380 | | > hide #!25.6 models |
| 37381 | | |
| 37382 | | > show #!25.6 models |
| 37383 | | |
| 37384 | | > hide #!25.6 models |
| 37385 | | |
| 37386 | | > show #!25.6 models |
| 37387 | | |
| 37388 | | > hide #!25.7 models |
| 37389 | | |
| 37390 | | > show #!25.7 models |
| 37391 | | |
| 37392 | | > hide #28.1 models |
| 37393 | | |
| 37394 | | > show #28.1 models |
| 37395 | | |
| 37396 | | > hide #28.1 models |
| 37397 | | |
| 37398 | | > show #28.1 models |
| 37399 | | |
| 37400 | | > hide #28.1 models |
| 37401 | | |
| 37402 | | > hide #28.2 models |
| 37403 | | |
| 37404 | | > show #28.2 models |
| 37405 | | |
| 37406 | | > show #28.1 models |
| 37407 | | |
| 37408 | | > hide #28.1 models |
| 37409 | | |
| 37410 | | > hide #28.2 models |
| 37411 | | |
| 37412 | | > show #28.2 models |
| 37413 | | |
| 37414 | | > hide #28.2 models |
| 37415 | | |
| 37416 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 37417 | | > dataset/Chimera sessions/20240326_leaf_fitting_v13.cxs" |
| 37418 | | |
| 37419 | | ——— End of log from Tue Mar 26 13:48:19 2024 ——— |
| 37420 | | |
| 37421 | | opened ChimeraX session |
| 37422 | | |
| 37423 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and |
| 37424 | | > resources/Processing/20240229_COPI_budding/Symmetry_splitting_masks/cryosparc_P126_J1413_005_volume_map.mrc" |
| 37425 | | |
| 37426 | | Opened cryosparc_P126_J1413_005_volume_map.mrc as #35, grid size 480,480,480, |
| 37427 | | pixel 0.953, shown at level 0.144, step 2, values float32 |
| 37428 | | |
| 37429 | | > select add #35 |
| 37430 | | |
| 37431 | | 2 models selected |
| 37432 | | |
| 37433 | | > ui mousemode right "translate selected models" |
| 37434 | | |
| 37435 | | > view matrix models #35,1,0,0,38.872,0,1,0,127.16,0,0,1,30.564 |
| 37436 | | |
| 37437 | | > ui mousemode right "rotate selected models" |
| 37438 | | |
| 37439 | | > view matrix models |
| 37440 | | > #35,0.97306,-0.10077,-0.20734,114.45,-0.019022,-0.93144,0.36341,481.54,-0.22975,-0.34967,-0.90826,592.75 |
| 37441 | | |
| 37442 | | > view matrix models |
| 37443 | | > #35,0.93801,0.14095,0.31667,-45.352,0.021261,-0.93527,0.3533,473.56,0.34597,-0.32467,-0.88028,422.86 |
| 37444 | | |
| 37445 | | > ui mousemode right "translate selected models" |
| 37446 | | |
| 37447 | | > view matrix models |
| 37448 | | > #35,0.93801,0.14095,0.31667,-28.084,0.021261,-0.93527,0.3533,500.77,0.34597,-0.32467,-0.88028,428.08 |
| 37449 | | |
| 37450 | | > view matrix models |
| 37451 | | > #35,0.93801,0.14095,0.31667,-11.53,0.021261,-0.93527,0.3533,471.38,0.34597,-0.32467,-0.88028,495.07 |
| 37452 | | |
| 37453 | | > view matrix models |
| 37454 | | > #35,0.93801,0.14095,0.31667,-31.081,0.021261,-0.93527,0.3533,476.85,0.34597,-0.32467,-0.88028,521.42 |
| 37455 | | |
| 37456 | | > ui mousemode right "rotate selected models" |
| 37457 | | |
| 37458 | | > view matrix models |
| 37459 | | > #35,0.90217,0.27291,0.33409,-54.42,0.12759,-0.90861,0.39768,431.92,0.41209,-0.31614,-0.85454,495.68 |
| 37460 | | |
| 37461 | | > ui tool show "Fit in Map" |
| 37462 | | |
| 37463 | | > fitmap #35 inMap #34 |
| 37464 | | |
| 37465 | | Fit map cryosparc_P126_J1413_005_volume_map.mrc in map |
| 37466 | | relion_locres_filtered_20240326_GT.mrc using 138168 points |
| 37467 | | correlation = 0.7875, correlation about mean = 0.5223, overlap = 232.2 |
| 37468 | | steps = 460, shift = 51.8, angle = 39.7 degrees |
| 37469 | | |
| 37470 | | Position of cryosparc_P126_J1413_005_volume_map.mrc (#35) relative to |
| 37471 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 37472 | | Matrix rotation and translation |
| 37473 | | 0.96692083 -0.25367451 0.02670869 70.21163555 |
| 37474 | | -0.25379291 -0.96725797 0.00108444 522.06873341 |
| 37475 | | 0.02555910 -0.00782705 -0.99964267 447.02232309 |
| 37476 | | Axis -0.99169569 0.12792986 -0.01317644 |
| 37477 | | Axis point 0.00000000 266.06925773 222.45211839 |
| 37478 | | Rotation angle (degrees) 179.74256592 |
| 37479 | | Shift along axis -8.73056298 |
| 37480 | | |
| 37481 | | |
| 37482 | | > hide #!35 models |
| 37483 | | |
| 37484 | | > show #!35 models |
| 37485 | | |
| 37486 | | > hide #!35 models |
| 37487 | | |
| 37488 | | > show #!35 models |
| 37489 | | |
| 37490 | | > volume #35 step 1 |
| 37491 | | |
| 37492 | | > volume #35 level 0.2171 |
| 37493 | | |
| 37494 | | > color #35 #73fdffff models |
| 37495 | | |
| 37496 | | > color #35 #73fdffbf models |
| 37497 | | |
| 37498 | | > ui mousemode right "translate selected models" |
| 37499 | | |
| 37500 | | > view matrix models |
| 37501 | | > #35,0.97012,-0.24173,0.020899,128.31,-0.242,-0.97021,0.011413,594.75,0.017517,-0.01613,-0.99972,528.01 |
| 37502 | | |
| 37503 | | > view matrix models |
| 37504 | | > #35,0.97012,-0.24173,0.020899,130.17,-0.242,-0.97021,0.011413,594.76,0.017517,-0.01613,-0.99972,528.11 |
| 37505 | | |
| 37506 | | > fitmap #35 inMap #34 |
| 37507 | | |
| 37508 | | Fit map cryosparc_P126_J1413_005_volume_map.mrc in map |
| 37509 | | relion_locres_filtered_20240326_GT.mrc using 251397 points |
| 37510 | | correlation = 0.8287, correlation about mean = 0.3769, overlap = 1089 |
| 37511 | | steps = 52, shift = 1.44, angle = 0.114 degrees |
| 37512 | | |
| 37513 | | Position of cryosparc_P126_J1413_005_volume_map.mrc (#35) relative to |
| 37514 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 37515 | | Matrix rotation and translation |
| 37516 | | 0.96688100 -0.25361193 0.02867252 69.83312106 |
| 37517 | | -0.25375364 -0.96726793 0.00135627 521.99028503 |
| 37518 | | 0.02739005 -0.00858711 -0.99958794 446.87697447 |
| 37519 | | Axis -0.99168564 0.12790564 -0.01413325 |
| 37520 | | Axis point 0.00000000 266.06324281 222.27972065 |
| 37521 | | Rotation angle (degrees) 179.71275392 |
| 37522 | | Shift along axis -8.80282672 |
| 37523 | | |
| 37524 | | |
| 37525 | | > select subtract #35 |
| 37526 | | |
| 37527 | | Nothing selected |
| 37528 | | |
| 37529 | | > hide #!34 models |
| 37530 | | |
| 37531 | | > volume #35 level 0.1987 |
| 37532 | | |
| 37533 | | > hide #!35 models |
| 37534 | | |
| 37535 | | > show #!34 models |
| 37536 | | |
| 37537 | | > hide #!34 models |
| 37538 | | |
| 37539 | | > show #!35 models |
| 37540 | | |
| 37541 | | > hide #!35 models |
| 37542 | | |
| 37543 | | > show #!35 models |
| 37544 | | |
| 37545 | | > show #!34 models |
| 37546 | | |
| 37547 | | > volume #35 level 0.1359 |
| 37548 | | |
| 37549 | | > hide #!35 models |
| 37550 | | |
| 37551 | | > show #!35 models |
| 37552 | | |
| 37553 | | > hide #!34 models |
| 37554 | | |
| 37555 | | > hide #!35 models |
| 37556 | | |
| 37557 | | > show #!34 models |
| 37558 | | |
| 37559 | | > hide #!34 models |
| 37560 | | |
| 37561 | | > show #!35 models |
| 37562 | | |
| 37563 | | > show #!34 models |
| 37564 | | |
| 37565 | | > hide #!35 models |
| 37566 | | |
| 37567 | | > show #!35 models |
| 37568 | | |
| 37569 | | > hide #!35 models |
| 37570 | | |
| 37571 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 37572 | | > dataset/Chimera sessions/20240326_leaf_fitting_v14.cxs" |
| 37573 | | |
| 37574 | | > show #!35 models |
| 37575 | | |
| 37576 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and |
| 37577 | | > resources/Processing/20240229_COPI_budding/cryosparc_P126_J1449_008_volume_map_sharp.mrc" |
| 37578 | | |
| 37579 | | Opened cryosparc_P126_J1449_008_volume_map_sharp.mrc as #36, grid size |
| 37580 | | 480,480,480, pixel 0.953, shown at level 0.17, step 2, values float32 |
| 37581 | | |
| 37582 | | > color #36 #73fdffff models |
| 37583 | | |
| 37584 | | > color #36 #73fdffc8 models |
| 37585 | | |
| 37586 | | > select add #36 |
| 37587 | | |
| 37588 | | 2 models selected |
| 37589 | | |
| 37590 | | > color #36 #73fdffc7 models |
| 37591 | | |
| 37592 | | > view matrix models #36,1,0,0,134.54,0,1,0,66.108,0,0,1,19.086 |
| 37593 | | |
| 37594 | | > view matrix models #36,1,0,0,137.13,0,1,0,64.787,0,0,1,117.11 |
| 37595 | | |
| 37596 | | > ui mousemode right "rotate selected models" |
| 37597 | | |
| 37598 | | > view matrix models |
| 37599 | | > #36,0.056086,-0.92264,0.38156,461.04,-0.99189,-0.095145,-0.084268,550.52,0.11405,-0.37374,-0.92049,639.45 |
| 37600 | | |
| 37601 | | > view matrix models |
| 37602 | | > #36,0.81264,-0.57783,0.075758,289.88,-0.58232,-0.81023,0.066513,583.57,0.022949,-0.098166,-0.99491,615.85 |
| 37603 | | |
| 37604 | | > view matrix models |
| 37605 | | > #36,0.78553,-0.58331,0.20662,265.51,-0.59501,-0.80369,-0.0067434,602.61,0.16999,-0.11764,-0.9784,583.63 |
| 37606 | | |
| 37607 | | > ui mousemode right "translate selected models" |
| 37608 | | |
| 37609 | | > view matrix models |
| 37610 | | > #36,0.78553,-0.58331,0.20662,270.11,-0.59501,-0.80369,-0.0067434,598.27,0.16999,-0.11764,-0.9784,540.75 |
| 37611 | | |
| 37612 | | > view matrix models |
| 37613 | | > #36,0.78553,-0.58331,0.20662,259.65,-0.59501,-0.80369,-0.0067434,611.27,0.16999,-0.11764,-0.9784,540.23 |
| 37614 | | |
| 37615 | | > fitmap #36 inMap #34 |
| 37616 | | |
| 37617 | | Fit map cryosparc_P126_J1449_008_volume_map_sharp.mrc in map |
| 37618 | | relion_locres_filtered_20240326_GT.mrc using 137972 points |
| 37619 | | correlation = 0.5875, correlation about mean = 0.1014, overlap = 144.9 |
| 37620 | | steps = 172, shift = 17.3, angle = 11.8 degrees |
| 37621 | | |
| 37622 | | Position of cryosparc_P126_J1449_008_volume_map_sharp.mrc (#36) relative to |
| 37623 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 37624 | | Matrix rotation and translation |
| 37625 | | 0.79251646 -0.60801798 0.04724189 243.68438170 |
| 37626 | | -0.60939626 -0.78655708 0.09982066 521.84571018 |
| 37627 | | -0.02353432 -0.10789854 -0.99388331 498.85499284 |
| 37628 | | Axis -0.94654323 0.32251585 -0.00628058 |
| 37629 | | Axis point 0.00000000 316.92705286 232.83595470 |
| 37630 | | Rotation angle (degrees) 173.70052777 |
| 37631 | | Shift along axis -65.48739144 |
| 37632 | | |
| 37633 | | |
| 37634 | | > select subtract #36 |
| 37635 | | |
| 37636 | | Nothing selected |
| 37637 | | |
| 37638 | | > hide #!36 models |
| 37639 | | |
| 37640 | | > show #!36 models |
| 37641 | | |
| 37642 | | > hide #!35 models |
| 37643 | | |
| 37644 | | > hide #!34 models |
| 37645 | | |
| 37646 | | > show #!34 models |
| 37647 | | |
| 37648 | | > hide #!34 models |
| 37649 | | |
| 37650 | | > show #!34 models |
| 37651 | | |
| 37652 | | > ui mousemode right "rotate selected models" |
| 37653 | | |
| 37654 | | > select add #36 |
| 37655 | | |
| 37656 | | 2 models selected |
| 37657 | | |
| 37658 | | > view matrix models |
| 37659 | | > #36,0.98096,-0.19407,-0.0076419,185.28,-0.19361,-0.98023,0.040778,563.9,-0.015405,-0.038522,-0.99914,559.02 |
| 37660 | | |
| 37661 | | > fitmap #36 inMap #34 |
| 37662 | | |
| 37663 | | Fit map cryosparc_P126_J1449_008_volume_map_sharp.mrc in map |
| 37664 | | relion_locres_filtered_20240326_GT.mrc using 137972 points |
| 37665 | | correlation = 0.6115, correlation about mean = 0.08318, overlap = 167.7 |
| 37666 | | steps = 96, shift = 8.76, angle = 3.55 degrees |
| 37667 | | |
| 37668 | | Position of cryosparc_P126_J1449_008_volume_map_sharp.mrc (#36) relative to |
| 37669 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 37670 | | Matrix rotation and translation |
| 37671 | | 0.96606437 -0.25727564 0.02299707 141.59744497 |
| 37672 | | -0.25752745 -0.96623177 0.00870514 506.06574925 |
| 37673 | | 0.01998088 -0.01433210 -0.99969763 472.20508693 |
| 37674 | | Axis -0.99147951 0.12981117 -0.01083724 |
| 37675 | | Axis point 0.00000000 263.68309230 233.81583547 |
| 37676 | | Rotation angle (degrees) 179.33434506 |
| 37677 | | Shift along axis -79.81537680 |
| 37678 | | |
| 37679 | | |
| 37680 | | > view matrix models |
| 37681 | | > #36,0.95194,-0.28838,-0.10317,245.09,-0.29527,-0.9536,-0.058901,604.59,-0.081399,0.086533,-0.99292,546.63 |
| 37682 | | |
| 37683 | | > fitmap #36 inMap #34 |
| 37684 | | |
| 37685 | | Fit map cryosparc_P126_J1449_008_volume_map_sharp.mrc in map |
| 37686 | | relion_locres_filtered_20240326_GT.mrc using 137972 points |
| 37687 | | correlation = 0.7137, correlation about mean = 0.2763, overlap = 246.1 |
| 37688 | | steps = 224, shift = 7.84, angle = 8.39 degrees |
| 37689 | | |
| 37690 | | Position of cryosparc_P126_J1449_008_volume_map_sharp.mrc (#36) relative to |
| 37691 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 37692 | | Matrix rotation and translation |
| 37693 | | 0.96625519 -0.25688299 0.01902743 148.49020627 |
| 37694 | | -0.25700032 -0.96640321 0.00395959 513.54756791 |
| 37695 | | 0.01737102 -0.00871603 -0.99981112 475.85913570 |
| 37696 | | Axis -0.99152782 0.12956988 -0.00917755 |
| 37697 | | Axis point 0.00000000 267.24157646 236.39693055 |
| 37698 | | Rotation angle (degrees) 179.63376510 |
| 37699 | | Shift along axis -85.05909744 |
| 37700 | | |
| 37701 | | |
| 37702 | | > select subtract #36 |
| 37703 | | |
| 37704 | | Nothing selected |
| 37705 | | |
| 37706 | | > hide #!34 models |
| 37707 | | |
| 37708 | | > volume #36 step 1 |
| 37709 | | |
| 37710 | | > volume #36 level 0.2273 |
| 37711 | | |
| 37712 | | > hide #!36 models |
| 37713 | | |
| 37714 | | > show #!34 models |
| 37715 | | |
| 37716 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 37717 | | > dataset/Chimera sessions/20240326_leaf_fitting_v15.cxs" |
| 37718 | | |
| 37719 | | > show #!36 models |
| 37720 | | |
| 37721 | | > hide #!34 models |
| 37722 | | |
| 37723 | | > show #!34 models |
| 37724 | | |
| 37725 | | > hide #!34 models |
| 37726 | | |
| 37727 | | > show #!34 models |
| 37728 | | |
| 37729 | | > hide #!36 models |
| 37730 | | |
| 37731 | | > show #!36 models |
| 37732 | | |
| 37733 | | > hide #!34 models |
| 37734 | | |
| 37735 | | > show #!34 models |
| 37736 | | |
| 37737 | | > hide #!34 models |
| 37738 | | |
| 37739 | | > show #!34 models |
| 37740 | | |
| 37741 | | > hide #!36 models |
| 37742 | | |
| 37743 | | > show #!36 models |
| 37744 | | |
| 37745 | | > hide #!36 models |
| 37746 | | |
| 37747 | | > show #!35 models |
| 37748 | | |
| 37749 | | > hide #!34 models |
| 37750 | | |
| 37751 | | > hide #!35 models |
| 37752 | | |
| 37753 | | > show #!36 models |
| 37754 | | |
| 37755 | | > hide #!36 models |
| 37756 | | |
| 37757 | | > show #!34 models |
| 37758 | | |
| 37759 | | > show #!1 models |
| 37760 | | |
| 37761 | | > hide #!34 models |
| 37762 | | |
| 37763 | | > hide #!1 models |
| 37764 | | |
| 37765 | | > show #!34 models |
| 37766 | | |
| 37767 | | > show #7 models |
| 37768 | | |
| 37769 | | > show #3 models |
| 37770 | | |
| 37771 | | > hide #3 models |
| 37772 | | |
| 37773 | | > show #3 models |
| 37774 | | |
| 37775 | | > hide #25.1 models |
| 37776 | | |
| 37777 | | > show #25.1 models |
| 37778 | | |
| 37779 | | > hide #25.1 models |
| 37780 | | |
| 37781 | | > hide #5 models |
| 37782 | | |
| 37783 | | > show #25.5 models |
| 37784 | | |
| 37785 | | > hide #25.5 models |
| 37786 | | |
| 37787 | | > show #!26.1 models |
| 37788 | | |
| 37789 | | > hide #!26.1 models |
| 37790 | | |
| 37791 | | > show #25.5 models |
| 37792 | | |
| 37793 | | > show #5 models |
| 37794 | | |
| 37795 | | > hide #5 models |
| 37796 | | |
| 37797 | | > show #5 models |
| 37798 | | |
| 37799 | | > hide #5 models |
| 37800 | | |
| 37801 | | > show #5 models |
| 37802 | | |
| 37803 | | > hide #5 models |
| 37804 | | |
| 37805 | | > show #5 models |
| 37806 | | |
| 37807 | | > hide #5 models |
| 37808 | | |
| 37809 | | > show #5 models |
| 37810 | | |
| 37811 | | > hide #25.5 models |
| 37812 | | |
| 37813 | | > show #6 models |
| 37814 | | |
| 37815 | | > hide #6 models |
| 37816 | | |
| 37817 | | > show #6 models |
| 37818 | | |
| 37819 | | > hide #6 models |
| 37820 | | |
| 37821 | | > show #25.5 models |
| 37822 | | |
| 37823 | | > hide #25.5 models |
| 37824 | | |
| 37825 | | > show #25.5 models |
| 37826 | | |
| 37827 | | > hide #25.5 models |
| 37828 | | |
| 37829 | | > show #25.5 models |
| 37830 | | |
| 37831 | | > select add #25.5 |
| 37832 | | |
| 37833 | | 635 atoms, 634 bonds, 159 residues, 1 model selected |
| 37834 | | |
| 37835 | | > hide #!34 models |
| 37836 | | |
| 37837 | | > ui mousemode right "translate selected models" |
| 37838 | | |
| 37839 | | > view matrix models |
| 37840 | | > #25.5,-0.73604,0.4305,0.52241,305.27,-0.38361,-0.90111,0.20209,413.36,0.55775,-0.051653,0.8284,142.68 |
| 37841 | | |
| 37842 | | > view matrix models |
| 37843 | | > #25.5,-0.73604,0.4305,0.52241,304.13,-0.38361,-0.90111,0.20209,415.06,0.55775,-0.051653,0.8284,144.4 |
| 37844 | | |
| 37845 | | > ui tool show Matchmaker |
| 37846 | | |
| 37847 | | > matchmaker #25.5 to #5 |
| 37848 | | |
| 37849 | | Parameters |
| 37850 | | --- |
| 37851 | | Chain pairing | bb |
| 37852 | | Alignment algorithm | Needleman-Wunsch |
| 37853 | | Similarity matrix | BLOSUM-62 |
| 37854 | | SS fraction | 0.3 |
| 37855 | | Gap open (HH/SS/other) | 18/18/6 |
| 37856 | | Gap extend | 1 |
| 37857 | | SS matrix | | | H | S | O |
| 37858 | | ---|---|---|--- |
| 37859 | | H | 6 | -9 | -6 |
| 37860 | | S | | 6 | -6 |
| 37861 | | O | | | 4 |
| 37862 | | Iteration cutoff | 2 |
| 37863 | | |
| 37864 | | Matchmaker hArf1_P84078, chain A (#5) with 5nzr_COPI_coat_leaf_2017.cif F, |
| 37865 | | chain F (#25.5), sequence alignment score = 612.9 |
| 37866 | | RMSD between 91 pruned atom pairs is 1.407 angstroms; (across all 159 pairs: |
| 37867 | | 2.595) |
| 37868 | | |
| 37869 | | |
| 37870 | | > select subtract #25.5 |
| 37871 | | |
| 37872 | | Nothing selected |
| 37873 | | |
| 37874 | | > show #!34 models |
| 37875 | | |
| 37876 | | > hide #5 models |
| 37877 | | |
| 37878 | | > hide #7 models |
| 37879 | | |
| 37880 | | > show #11 models |
| 37881 | | |
| 37882 | | > volume #34 level 0.007041 |
| 37883 | | |
| 37884 | | > combine 25.5 |
| 37885 | | |
| 37886 | | Expected a keyword |
| 37887 | | |
| 37888 | | > combine #25.5 |
| 37889 | | |
| 37890 | | > select add #37 |
| 37891 | | |
| 37892 | | 635 atoms, 634 bonds, 159 residues, 1 model selected |
| 37893 | | |
| 37894 | | > view matrix models |
| 37895 | | > #37,-0.53385,0.84429,0.046635,295.94,-0.84212,-0.53584,0.060952,498.92,0.07645,-0.0067325,0.99705,172.15 |
| 37896 | | |
| 37897 | | > view matrix models |
| 37898 | | > #37,-0.53385,0.84429,0.046635,290.65,-0.84212,-0.53584,0.060952,517.84,0.07645,-0.0067325,0.99705,203.74 |
| 37899 | | |
| 37900 | | > view matrix models |
| 37901 | | > #37,-0.53385,0.84429,0.046635,286.69,-0.84212,-0.53584,0.060952,511.7,0.07645,-0.0067325,0.99705,210.47 |
| 37902 | | |
| 37903 | | > view matrix models |
| 37904 | | > #37,-0.53385,0.84429,0.046635,288.46,-0.84212,-0.53584,0.060952,513.92,0.07645,-0.0067325,0.99705,208.92 |
| 37905 | | |
| 37906 | | > ui mousemode right "rotate selected models" |
| 37907 | | |
| 37908 | | > view matrix models |
| 37909 | | > #37,-0.26547,0.96403,-0.013259,241.37,-0.93121,-0.25282,0.26256,499.47,0.24976,0.082049,0.96482,177.44 |
| 37910 | | |
| 37911 | | > view matrix models |
| 37912 | | > #37,-0.42633,0.87802,-0.21753,287,-0.89277,-0.3697,0.25746,499.75,0.14563,0.30397,0.94148,184.39 |
| 37913 | | |
| 37914 | | > view matrix models |
| 37915 | | > #37,0.013244,0.89027,0.45525,166.47,-0.96278,-0.11157,0.2462,498.21,0.26997,-0.44156,0.85565,210.01 |
| 37916 | | |
| 37917 | | > view matrix models |
| 37918 | | > #37,0.43692,0.89657,0.072551,121.99,-0.60427,0.23282,0.76201,384.07,0.6663,-0.37678,0.64349,155.11 |
| 37919 | | |
| 37920 | | > view matrix models |
| 37921 | | > #37,-0.17109,0.95269,-0.25123,242.73,-0.52973,0.12605,0.83875,372.12,0.83073,0.27659,0.4831,103.39 |
| 37922 | | |
| 37923 | | > view matrix models |
| 37924 | | > #37,-0.33767,0.94126,-0.00037941,253.75,-0.6278,-0.22492,0.74517,413.97,0.70132,0.25186,0.66687,113.58 |
| 37925 | | |
| 37926 | | > view matrix models |
| 37927 | | > #37,-0.13258,0.98137,-0.13904,226.98,-0.57174,0.038867,0.81951,385.18,0.80965,0.18814,0.55594,106.65 |
| 37928 | | |
| 37929 | | > view matrix models |
| 37930 | | > #37,-0.34901,0.8952,-0.27716,277.3,-0.5072,0.068249,0.85912,370.08,0.788,0.44042,0.43022,105.29 |
| 37931 | | |
| 37932 | | > view matrix models |
| 37933 | | > #37,-0.34953,0.91197,-0.21482,272.16,-0.52792,-0.0022859,0.84929,378.04,0.77403,0.41026,0.48224,105.65 |
| 37934 | | |
| 37935 | | > view matrix models |
| 37936 | | > #37,-0.23498,0.91143,-0.33776,261.6,-0.48984,0.1891,0.85106,361.2,0.83955,0.36543,0.40202,102.71 |
| 37937 | | |
| 37938 | | > ui mousemode right "translate selected models" |
| 37939 | | |
| 37940 | | > view matrix models |
| 37941 | | > #37,-0.23498,0.91143,-0.33776,260.26,-0.48984,0.1891,0.85106,366.99,0.83955,0.36543,0.40202,106.91 |
| 37942 | | |
| 37943 | | > ui mousemode right "rotate selected models" |
| 37944 | | |
| 37945 | | > view matrix models |
| 37946 | | > #37,-0.14164,0.96699,-0.21183,232.97,-0.55666,0.099149,0.82481,384.82,0.81858,0.23475,0.52424,109.03 |
| 37947 | | |
| 37948 | | > view matrix models |
| 37949 | | > #37,0.23062,0.55681,-0.79798,233.72,-0.082745,0.82834,0.55408,285.02,0.96952,-0.061755,0.23711,119.81 |
| 37950 | | |
| 37951 | | > view matrix models |
| 37952 | | > #37,-0.41519,0.77847,-0.47075,306.72,-0.24849,0.40074,0.88185,313.15,0.87514,0.48311,0.027061,120.55 |
| 37953 | | |
| 37954 | | > view matrix models |
| 37955 | | > #37,-0.54808,0.83523,-0.044679,296.3,-0.3291,-0.16623,0.92955,354.02,0.76896,0.52417,0.36598,112.57 |
| 37956 | | |
| 37957 | | > view matrix models |
| 37958 | | > #37,-0.22731,0.97035,-0.0822,238.1,-0.36299,-0.006099,0.93177,350.83,0.90364,0.24164,0.35361,106.28 |
| 37959 | | |
| 37960 | | > ui mousemode right "translate selected models" |
| 37961 | | |
| 37962 | | > view matrix models |
| 37963 | | > #37,-0.22731,0.97035,-0.0822,237.53,-0.36299,-0.006099,0.93177,348.3,0.90364,0.24164,0.35361,106.02 |
| 37964 | | |
| 37965 | | > ui mousemode right "rotate selected models" |
| 37966 | | |
| 37967 | | > view matrix models |
| 37968 | | > #37,-0.26817,0.94765,-0.17333,251.88,-0.31325,0.084372,0.94592,334.12,0.91102,0.30796,0.27422,106.69 |
| 37969 | | |
| 37970 | | > view matrix models |
| 37971 | | > #37,-0.29695,0.94968,-0.09959,251.47,-0.34179,-0.0083276,0.93974,344.34,0.89162,0.3131,0.32707,105.99 |
| 37972 | | |
| 37973 | | > view matrix models |
| 37974 | | > #37,-0.2546,0.96317,-0.086493,242.77,-0.35326,-0.0093715,0.93548,346.6,0.90022,0.26873,0.34263,105.88 |
| 37975 | | |
| 37976 | | > ui tool show "Fit in Map" |
| 37977 | | |
| 37978 | | > fitmap #37 inMap #34 |
| 37979 | | |
| 37980 | | Fit molecule copy of 5nzr_COPI_coat_leaf_2017.cif F (#37) to map |
| 37981 | | relion_locres_filtered_20240326_GT.mrc (#34) using 635 atoms |
| 37982 | | average map value = 0.009537, steps = 64 |
| 37983 | | shifted from previous position = 3.04 |
| 37984 | | rotated from previous position = 26.7 degrees |
| 37985 | | atoms outside contour = 177, contour level = 0.0070409 |
| 37986 | | |
| 37987 | | Position of copy of 5nzr_COPI_coat_leaf_2017.cif F (#37) relative to |
| 37988 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 37989 | | Matrix rotation and translation |
| 37990 | | 0.03518402 0.96625924 0.25515711 108.12871839 |
| 37991 | | -0.42593365 -0.21646744 0.87847729 296.68750822 |
| 37992 | | 0.90407002 -0.13958836 0.40394614 42.99047607 |
| 37993 | | Axis -0.55246929 -0.35214277 -0.75549530 |
| 37994 | | Axis point 138.21037911 138.56100197 0.00000000 |
| 37995 | | Rotation angle (degrees) 112.87168388 |
| 37996 | | Shift along axis -196.69325894 |
| 37997 | | |
| 37998 | | |
| 37999 | | > fitmap #37 inMap #34 |
| 38000 | | |
| 38001 | | Fit molecule copy of 5nzr_COPI_coat_leaf_2017.cif F (#37) to map |
| 38002 | | relion_locres_filtered_20240326_GT.mrc (#34) using 635 atoms |
| 38003 | | average map value = 0.009537, steps = 36 |
| 38004 | | shifted from previous position = 0.00551 |
| 38005 | | rotated from previous position = 0.0232 degrees |
| 38006 | | atoms outside contour = 177, contour level = 0.0070409 |
| 38007 | | |
| 38008 | | Position of copy of 5nzr_COPI_coat_leaf_2017.cif F (#37) relative to |
| 38009 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 38010 | | Matrix rotation and translation |
| 38011 | | 0.03479145 0.96629551 0.25507356 108.20209154 |
| 38012 | | -0.42596846 -0.21654561 0.87844115 296.70286695 |
| 38013 | | 0.90406881 -0.13921553 0.40407747 42.96077084 |
| 38014 | | Axis -0.55229028 -0.35221482 -0.75559259 |
| 38015 | | Axis point 138.22815027 138.53430087 0.00000000 |
| 38016 | | Rotation angle (degrees) 112.88223694 |
| 38017 | | Shift along axis -196.72295138 |
| 38018 | | |
| 38019 | | |
| 38020 | | > fitmap #37 inMap #34 |
| 38021 | | |
| 38022 | | Fit molecule copy of 5nzr_COPI_coat_leaf_2017.cif F (#37) to map |
| 38023 | | relion_locres_filtered_20240326_GT.mrc (#34) using 635 atoms |
| 38024 | | average map value = 0.009537, steps = 28 |
| 38025 | | shifted from previous position = 0.02 |
| 38026 | | rotated from previous position = 0.0771 degrees |
| 38027 | | atoms outside contour = 177, contour level = 0.0070409 |
| 38028 | | |
| 38029 | | Position of copy of 5nzr_COPI_coat_leaf_2017.cif F (#37) relative to |
| 38030 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 38031 | | Matrix rotation and translation |
| 38032 | | 0.03361578 0.96619871 0.25559736 108.38398615 |
| 38033 | | -0.42634764 -0.21744143 0.87803582 296.85028859 |
| 38034 | | 0.90393454 -0.13848919 0.40462708 42.90508381 |
| 38035 | | Axis -0.55186871 -0.35198052 -0.75600968 |
| 38036 | | Axis point 138.29837629 138.51992435 0.00000000 |
| 38037 | | Rotation angle (degrees) 112.92956801 |
| 38038 | | Shift along axis -196.73590871 |
| 38039 | | |
| 38040 | | |
| 38041 | | > fitmap #37 inMap #34 |
| 38042 | | |
| 38043 | | Fit molecule copy of 5nzr_COPI_coat_leaf_2017.cif F (#37) to map |
| 38044 | | relion_locres_filtered_20240326_GT.mrc (#34) using 635 atoms |
| 38045 | | average map value = 0.009537, steps = 48 |
| 38046 | | shifted from previous position = 0.0285 |
| 38047 | | rotated from previous position = 0.113 degrees |
| 38048 | | atoms outside contour = 177, contour level = 0.0070409 |
| 38049 | | |
| 38050 | | Position of copy of 5nzr_COPI_coat_leaf_2017.cif F (#37) relative to |
| 38051 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 38052 | | Matrix rotation and translation |
| 38053 | | 0.03541471 0.96631473 0.25491495 108.10128492 |
| 38054 | | -0.42588964 -0.21616037 0.87857424 296.65613018 |
| 38055 | | 0.90408174 -0.13968009 0.40388818 42.99770199 |
| 38056 | | Axis -0.55251102 -0.35224187 -0.75541859 |
| 38057 | | Axis point 138.20573010 138.55793198 0.00000000 |
| 38058 | | Rotation angle (degrees) 112.85676625 |
| 38059 | | Shift along axis -196.70312278 |
| 38060 | | |
| 38061 | | |
| 38062 | | > fitmap #37 inMap #34 |
| 38063 | | |
| 38064 | | Fit molecule copy of 5nzr_COPI_coat_leaf_2017.cif F (#37) to map |
| 38065 | | relion_locres_filtered_20240326_GT.mrc (#34) using 635 atoms |
| 38066 | | average map value = 0.009537, steps = 28 |
| 38067 | | shifted from previous position = 0.032 |
| 38068 | | rotated from previous position = 0.0961 degrees |
| 38069 | | atoms outside contour = 177, contour level = 0.0070409 |
| 38070 | | |
| 38071 | | Position of copy of 5nzr_COPI_coat_leaf_2017.cif F (#37) relative to |
| 38072 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 38073 | | Matrix rotation and translation |
| 38074 | | 0.03392899 0.96620039 0.25554965 108.33940231 |
| 38075 | | -0.42632747 -0.21727376 0.87808712 296.83434701 |
| 38076 | | 0.90393235 -0.13874044 0.40454589 42.92792536 |
| 38077 | | Axis -0.55198231 -0.35197294 -0.75593028 |
| 38078 | | Axis point 138.29150050 138.53365427 0.00000000 |
| 38079 | | Rotation angle (degrees) 112.91713633 |
| 38080 | | Shift along axis -196.72960858 |
| 38081 | | |
| 38082 | | |
| 38083 | | > select subtract #37 |
| 38084 | | |
| 38085 | | Nothing selected |
| 38086 | | |
| 38087 | | > show #!2 models |
| 38088 | | |
| 38089 | | > hide #!34 models |
| 38090 | | |
| 38091 | | > volume #2 level 0.1233 |
| 38092 | | |
| 38093 | | > show #!34 models |
| 38094 | | |
| 38095 | | > volume #2 level 0.09309 |
| 38096 | | |
| 38097 | | > ui mousemode right label |
| 38098 | | |
| 38099 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 38100 | | > dataset/Chimera sessions/20240326_leaf_fitting_v16.cxs" |
| 38101 | | |
| 38102 | | > hide #!34 models |
| 38103 | | |
| 38104 | | > hide #!2 models |
| 38105 | | |
| 38106 | | > show #!35 models |
| 38107 | | |
| 38108 | | > hide #!35 models |
| 38109 | | |
| 38110 | | > show #!36 models |
| 38111 | | |
| 38112 | | > hide #!36 models |
| 38113 | | |
| 38114 | | > show #!34 models |
| 38115 | | |
| 38116 | | > hide #!34 models |
| 38117 | | |
| 38118 | | > show #!34 models |
| 38119 | | |
| 38120 | | > show #!30 models |
| 38121 | | |
| 38122 | | > hide #!30 models |
| 38123 | | |
| 38124 | | > hide #3 models |
| 38125 | | |
| 38126 | | > show #3 models |
| 38127 | | |
| 38128 | | > show #!2 models |
| 38129 | | |
| 38130 | | > volume #2 level 0.1866 |
| 38131 | | |
| 38132 | | > hide #!2 models |
| 38133 | | |
| 38134 | | > hide #3 models |
| 38135 | | |
| 38136 | | > hide #11 models |
| 38137 | | |
| 38138 | | > hide #24 models |
| 38139 | | |
| 38140 | | > show #24 models |
| 38141 | | |
| 38142 | | > hide #!25.2 models |
| 38143 | | |
| 38144 | | > show #!25.2 models |
| 38145 | | |
| 38146 | | > hide #25.3 models |
| 38147 | | |
| 38148 | | > show #25.3 models |
| 38149 | | |
| 38150 | | > hide #!25.4 models |
| 38151 | | |
| 38152 | | > show #!25.4 models |
| 38153 | | |
| 38154 | | > hide #25.5 models |
| 38155 | | |
| 38156 | | > show #25.5 models |
| 38157 | | |
| 38158 | | > hide #25.5 models |
| 38159 | | |
| 38160 | | > show #25.5 models |
| 38161 | | |
| 38162 | | > hide #!25.6 models |
| 38163 | | |
| 38164 | | > show #!25.6 models |
| 38165 | | |
| 38166 | | > hide #!25.7 models |
| 38167 | | |
| 38168 | | > show #!25.7 models |
| 38169 | | |
| 38170 | | > hide #25.8 models |
| 38171 | | |
| 38172 | | > show #25.8 models |
| 38173 | | |
| 38174 | | > hide #25.9 models |
| 38175 | | |
| 38176 | | > show #25.9 models |
| 38177 | | |
| 38178 | | > hide #25.10 models |
| 38179 | | |
| 38180 | | > show #25.10 models |
| 38181 | | |
| 38182 | | > show #!26.1 models |
| 38183 | | |
| 38184 | | > hide #!26.1 models |
| 38185 | | |
| 38186 | | > show #!26.2 models |
| 38187 | | |
| 38188 | | > hide #!25.6 models |
| 38189 | | |
| 38190 | | > show #!25.6 models |
| 38191 | | |
| 38192 | | > hide #!25.6 models |
| 38193 | | |
| 38194 | | > show #!25.6 models |
| 38195 | | |
| 38196 | | > hide #!26.2 models |
| 38197 | | |
| 38198 | | > show #!26.2 models |
| 38199 | | |
| 38200 | | > hide #!26.2 models |
| 38201 | | |
| 38202 | | > show #29 models |
| 38203 | | |
| 38204 | | > hide #29 models |
| 38205 | | |
| 38206 | | > show #29 models |
| 38207 | | |
| 38208 | | > hide #29 models |
| 38209 | | |
| 38210 | | > hide #37 models |
| 38211 | | |
| 38212 | | > show #37 models |
| 38213 | | |
| 38214 | | > hide #37 models |
| 38215 | | |
| 38216 | | > show #37 models |
| 38217 | | |
| 38218 | | > show #!26.2 models |
| 38219 | | |
| 38220 | | > hide #!26.2 models |
| 38221 | | |
| 38222 | | > show #!26.2 models |
| 38223 | | |
| 38224 | | > hide #!26.2 models |
| 38225 | | |
| 38226 | | > hide #25.3 models |
| 38227 | | |
| 38228 | | > show #25.3 models |
| 38229 | | |
| 38230 | | > show #25.1 models |
| 38231 | | |
| 38232 | | > show #!30 models |
| 38233 | | |
| 38234 | | > show #28.2 models |
| 38235 | | |
| 38236 | | > show #27.2 models |
| 38237 | | |
| 38238 | | > hide #25.1 models |
| 38239 | | |
| 38240 | | > show #25.1 models |
| 38241 | | |
| 38242 | | > hide #25.1 models |
| 38243 | | |
| 38244 | | > volume #34 level 0.005256 |
| 38245 | | |
| 38246 | | > volume #34 level 0.006446 |
| 38247 | | |
| 38248 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 38249 | | > dataset/Chimera sessions/20240328_leaf_fitting_v17.cxs" |
| 38250 | | |
| 38251 | | ——— End of log from Fri Mar 29 15:25:34 2024 ——— |
| 38252 | | |
| 38253 | | opened ChimeraX session |
| 38254 | | |
| 38255 | | > show #!26.1 models |
| 38256 | | |
| 38257 | | > hide #!26.1 models |
| 38258 | | |
| 38259 | | > show #!26.1 models |
| 38260 | | |
| 38261 | | > hide #!26.1 models |
| 38262 | | |
| 38263 | | > hide #37 models |
| 38264 | | |
| 38265 | | > show #37 models |
| 38266 | | |
| 38267 | | > hide #37 models |
| 38268 | | |
| 38269 | | > show #37 models |
| 38270 | | |
| 38271 | | > hide #37 models |
| 38272 | | |
| 38273 | | > show #!26.1 models |
| 38274 | | |
| 38275 | | > hide #!26.1 models |
| 38276 | | |
| 38277 | | > show #!26.1 models |
| 38278 | | |
| 38279 | | > hide #!26.1 models |
| 38280 | | |
| 38281 | | > hide #25.5 models |
| 38282 | | |
| 38283 | | > show #25.5 models |
| 38284 | | |
| 38285 | | > hide #25.5 models |
| 38286 | | |
| 38287 | | > hide #25.9 models |
| 38288 | | |
| 38289 | | > show #25.9 models |
| 38290 | | |
| 38291 | | > show #25.5 models |
| 38292 | | |
| 38293 | | > hide #25.10 models |
| 38294 | | |
| 38295 | | > show #25.10 models |
| 38296 | | |
| 38297 | | > hide #25.10 models |
| 38298 | | |
| 38299 | | > ui tool show Matchmaker |
| 38300 | | |
| 38301 | | > show #25.10 models |
| 38302 | | |
| 38303 | | > show #!26.1 models |
| 38304 | | |
| 38305 | | > matchmaker #!26.1 to #25.10 |
| 38306 | | |
| 38307 | | Parameters |
| 38308 | | --- |
| 38309 | | Chain pairing | bb |
| 38310 | | Alignment algorithm | Needleman-Wunsch |
| 38311 | | Similarity matrix | BLOSUM-62 |
| 38312 | | SS fraction | 0.3 |
| 38313 | | Gap open (HH/SS/other) | 18/18/6 |
| 38314 | | Gap extend | 1 |
| 38315 | | SS matrix | | | H | S | O |
| 38316 | | ---|---|---|--- |
| 38317 | | H | 6 | -9 | -6 |
| 38318 | | S | | 6 | -6 |
| 38319 | | O | | | 4 |
| 38320 | | Iteration cutoff | 2 |
| 38321 | | |
| 38322 | | Matchmaker 5nzr_COPI_coat_leaf_2017.cif R, chain R (#25.10) with |
| 38323 | | 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A, chain A (#26.1), sequence alignment |
| 38324 | | score = 773.4 |
| 38325 | | RMSD between 92 pruned atom pairs is 1.282 angstroms; (across all 159 pairs: |
| 38326 | | 2.182) |
| 38327 | | |
| 38328 | | |
| 38329 | | > hide #!34 models |
| 38330 | | |
| 38331 | | > matchmaker #!26.1 to #25.10 |
| 38332 | | |
| 38333 | | Parameters |
| 38334 | | --- |
| 38335 | | Chain pairing | bb |
| 38336 | | Alignment algorithm | Needleman-Wunsch |
| 38337 | | Similarity matrix | BLOSUM-62 |
| 38338 | | SS fraction | 0.3 |
| 38339 | | Gap open (HH/SS/other) | 18/18/6 |
| 38340 | | Gap extend | 1 |
| 38341 | | SS matrix | | | H | S | O |
| 38342 | | ---|---|---|--- |
| 38343 | | H | 6 | -9 | -6 |
| 38344 | | S | | 6 | -6 |
| 38345 | | O | | | 4 |
| 38346 | | Iteration cutoff | 2 |
| 38347 | | |
| 38348 | | Matchmaker 5nzr_COPI_coat_leaf_2017.cif R, chain R (#25.10) with |
| 38349 | | 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A, chain A (#26.1), sequence alignment |
| 38350 | | score = 773.4 |
| 38351 | | RMSD between 92 pruned atom pairs is 1.282 angstroms; (across all 159 pairs: |
| 38352 | | 2.182) |
| 38353 | | |
| 38354 | | |
| 38355 | | > show #!34 models |
| 38356 | | |
| 38357 | | > hide #!34 models |
| 38358 | | |
| 38359 | | > ui tool show "Fit in Map" |
| 38360 | | |
| 38361 | | > show #!34 models |
| 38362 | | |
| 38363 | | > fitmap #26.1 inMap #34 |
| 38364 | | |
| 38365 | | Fit molecule 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#26.1) to map |
| 38366 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1306 atoms |
| 38367 | | average map value = 0.008909, steps = 64 |
| 38368 | | shifted from previous position = 0.77 |
| 38369 | | rotated from previous position = 4.16 degrees |
| 38370 | | atoms outside contour = 520, contour level = 0.0064458 |
| 38371 | | |
| 38372 | | Position of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#26.1) relative to |
| 38373 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 38374 | | Matrix rotation and translation |
| 38375 | | -0.21066750 0.17815726 -0.96118634 330.74516316 |
| 38376 | | 0.67347295 0.73913574 -0.01060821 309.91319893 |
| 38377 | | 0.70855725 -0.64956781 -0.27569598 215.29865366 |
| 38378 | | Axis -0.34442130 -0.90004949 0.26699227 |
| 38379 | | Axis point -8.28188363 0.00000000 234.35961275 |
| 38380 | | Rotation angle (degrees) 111.93866769 |
| 38381 | | Shift along axis -335.36982072 |
| 38382 | | |
| 38383 | | |
| 38384 | | > fitmap #26.1 inMap #34 |
| 38385 | | |
| 38386 | | Fit molecule 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#26.1) to map |
| 38387 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1306 atoms |
| 38388 | | average map value = 0.008909, steps = 48 |
| 38389 | | shifted from previous position = 0.0112 |
| 38390 | | rotated from previous position = 0.076 degrees |
| 38391 | | atoms outside contour = 521, contour level = 0.0064458 |
| 38392 | | |
| 38393 | | Position of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#26.1) relative to |
| 38394 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 38395 | | Matrix rotation and translation |
| 38396 | | -0.21042678 0.17939235 -0.96100934 330.82665780 |
| 38397 | | 0.67396729 0.73869774 -0.00968153 309.88279527 |
| 38398 | | 0.70815863 -0.64972612 -0.27634636 215.29149740 |
| 38399 | | Axis -0.34506970 -0.89990494 0.26664209 |
| 38400 | | Axis point -8.29655738 0.00000000 234.18876552 |
| 38401 | | Rotation angle (degrees) 111.96484961 |
| 38402 | | Shift along axis -335.61753797 |
| 38403 | | |
| 38404 | | |
| 38405 | | > fitmap #25.10 inMap #34 |
| 38406 | | |
| 38407 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif R (#25.10) to map |
| 38408 | | relion_locres_filtered_20240326_GT.mrc (#34) using 635 atoms |
| 38409 | | average map value = 0.01241, steps = 96 |
| 38410 | | shifted from previous position = 0.00308 |
| 38411 | | rotated from previous position = 0.0115 degrees |
| 38412 | | atoms outside contour = 130, contour level = 0.0064458 |
| 38413 | | |
| 38414 | | Position of 5nzr_COPI_coat_leaf_2017.cif R (#25.10) relative to |
| 38415 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 38416 | | Matrix rotation and translation |
| 38417 | | -0.57911686 0.81426097 -0.04003396 223.95598831 |
| 38418 | | -0.80964168 -0.58019030 -0.08865414 418.66731589 |
| 38419 | | -0.09541493 -0.01892795 0.99525761 159.85096414 |
| 38420 | | Axis 0.04287302 0.03405247 -0.99850004 |
| 38421 | | Axis point 224.36012870 152.91748322 0.00000000 |
| 38422 | | Rotation angle (degrees) 125.59308112 |
| 38423 | | Shift along axis -135.75286879 |
| 38424 | | |
| 38425 | | |
| 38426 | | > fitmap #25.10 inMap #34 |
| 38427 | | |
| 38428 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif R (#25.10) to map |
| 38429 | | relion_locres_filtered_20240326_GT.mrc (#34) using 635 atoms |
| 38430 | | average map value = 0.01241, steps = 48 |
| 38431 | | shifted from previous position = 0.00482 |
| 38432 | | rotated from previous position = 0.0724 degrees |
| 38433 | | atoms outside contour = 131, contour level = 0.0064458 |
| 38434 | | |
| 38435 | | Position of 5nzr_COPI_coat_leaf_2017.cif R (#25.10) relative to |
| 38436 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 38437 | | Matrix rotation and translation |
| 38438 | | -0.57945185 0.81399028 -0.04068608 224.09024031 |
| 38439 | | -0.80945482 -0.58060406 -0.08764597 418.62233634 |
| 38440 | | -0.09496547 -0.01785308 0.99532046 159.62444397 |
| 38441 | | Axis 0.04292699 0.03338522 -0.99852026 |
| 38442 | | Axis point 224.33339427 152.83275015 0.00000000 |
| 38443 | | Rotation angle (degrees) 125.61724891 |
| 38444 | | Shift along axis -135.79292122 |
| 38445 | | |
| 38446 | | |
| 38447 | | > fitmap #25.10 inMap #34 |
| 38448 | | |
| 38449 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif R (#25.10) to map |
| 38450 | | relion_locres_filtered_20240326_GT.mrc (#34) using 635 atoms |
| 38451 | | average map value = 0.0124, steps = 144 |
| 38452 | | shifted from previous position = 0.0166 |
| 38453 | | rotated from previous position = 0.048 degrees |
| 38454 | | atoms outside contour = 131, contour level = 0.0064458 |
| 38455 | | |
| 38456 | | Position of 5nzr_COPI_coat_leaf_2017.cif R (#25.10) relative to |
| 38457 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 38458 | | Matrix rotation and translation |
| 38459 | | -0.57930230 0.81411152 -0.04038906 224.03717989 |
| 38460 | | -0.80950866 -0.58041314 -0.08840991 418.66371837 |
| 38461 | | -0.09541787 -0.01852077 0.99526499 159.78590532 |
| 38462 | | Axis 0.04298079 0.03384191 -0.99850257 |
| 38463 | | Axis point 224.36632488 152.89118575 0.00000000 |
| 38464 | | Rotation angle (degrees) 125.60720577 |
| 38465 | | Shift along axis -135.74896084 |
| 38466 | | |
| 38467 | | |
| 38468 | | > hide #!34 models |
| 38469 | | |
| 38470 | | > select add #25.10 |
| 38471 | | |
| 38472 | | 635 atoms, 634 bonds, 159 residues, 1 model selected |
| 38473 | | |
| 38474 | | > select subtract #25.10 |
| 38475 | | |
| 38476 | | Nothing selected |
| 38477 | | |
| 38478 | | > select add #25.10 |
| 38479 | | |
| 38480 | | 635 atoms, 634 bonds, 159 residues, 1 model selected |
| 38481 | | |
| 38482 | | > select subtract #25.10 |
| 38483 | | |
| 38484 | | Nothing selected |
| 38485 | | |
| 38486 | | > select add #26.1 |
| 38487 | | |
| 38488 | | 1306 atoms, 1331 bonds, 3 pseudobonds, 161 residues, 2 models selected |
| 38489 | | |
| 38490 | | > show #!34 models |
| 38491 | | |
| 38492 | | > select subtract #26.1 |
| 38493 | | |
| 38494 | | Nothing selected |
| 38495 | | |
| 38496 | | > select add #26.1 |
| 38497 | | |
| 38498 | | 1306 atoms, 1331 bonds, 3 pseudobonds, 161 residues, 2 models selected |
| 38499 | | |
| 38500 | | > select subtract #26.1 |
| 38501 | | |
| 38502 | | Nothing selected |
| 38503 | | |
| 38504 | | > hide #25.10 models |
| 38505 | | |
| 38506 | | > show #25.10 models |
| 38507 | | |
| 38508 | | > show #6 models |
| 38509 | | |
| 38510 | | > hide #6 models |
| 38511 | | |
| 38512 | | > show #5 models |
| 38513 | | |
| 38514 | | > hide #5 models |
| 38515 | | |
| 38516 | | > hide #!26.1 models |
| 38517 | | |
| 38518 | | > show #!26.1 models |
| 38519 | | |
| 38520 | | > hide #!26.1 models |
| 38521 | | |
| 38522 | | > show #!26.1 models |
| 38523 | | |
| 38524 | | > hide #!26.1 models |
| 38525 | | |
| 38526 | | > hide #25.10 models |
| 38527 | | |
| 38528 | | > show #25.10 models |
| 38529 | | |
| 38530 | | > select add #25.10 |
| 38531 | | |
| 38532 | | 635 atoms, 634 bonds, 159 residues, 1 model selected |
| 38533 | | |
| 38534 | | > ui mousemode right "translate selected models" |
| 38535 | | |
| 38536 | | > view matrix models |
| 38537 | | > #25.10,-0.56979,0.82111,-0.033523,282.49,-0.81565,-0.57004,-0.098854,495.12,-0.10028,-0.028983,0.99454,238.05 |
| 38538 | | |
| 38539 | | > view matrix models |
| 38540 | | > #25.10,-0.56979,0.82111,-0.033523,282.64,-0.81565,-0.57004,-0.098854,495.27,-0.10028,-0.028983,0.99454,237.65 |
| 38541 | | |
| 38542 | | > fitmap #25.10 inMap #34 |
| 38543 | | |
| 38544 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif R (#25.10) to map |
| 38545 | | relion_locres_filtered_20240326_GT.mrc (#34) using 635 atoms |
| 38546 | | average map value = 0.01241, steps = 108 |
| 38547 | | shifted from previous position = 1.77 |
| 38548 | | rotated from previous position = 0.0348 degrees |
| 38549 | | atoms outside contour = 131, contour level = 0.0064458 |
| 38550 | | |
| 38551 | | Position of 5nzr_COPI_coat_leaf_2017.cif R (#25.10) relative to |
| 38552 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 38553 | | Matrix rotation and translation |
| 38554 | | -0.57967028 0.81383264 -0.04072810 224.15941597 |
| 38555 | | -0.80924405 -0.58081542 -0.08819020 418.69178013 |
| 38556 | | -0.09542757 -0.01816226 0.99527067 159.71116751 |
| 38557 | | Axis 0.04308066 0.03365071 -0.99850473 |
| 38558 | | Axis point 224.37093318 152.88832243 0.00000000 |
| 38559 | | Rotation angle (degrees) 125.63415139 |
| 38560 | | Shift along axis -135.72614414 |
| 38561 | | |
| 38562 | | |
| 38563 | | > view matrix models |
| 38564 | | > #25.10,-0.57016,0.82084,-0.033865,283.15,-0.81539,-0.57045,-0.098639,495.39,-0.10028,-0.028627,0.99455,238.98 |
| 38565 | | |
| 38566 | | > fitmap #25.10 inMap #34 |
| 38567 | | |
| 38568 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif R (#25.10) to map |
| 38569 | | relion_locres_filtered_20240326_GT.mrc (#34) using 635 atoms |
| 38570 | | average map value = 0.0124, steps = 84 |
| 38571 | | shifted from previous position = 1.46 |
| 38572 | | rotated from previous position = 0.0732 degrees |
| 38573 | | atoms outside contour = 131, contour level = 0.0064458 |
| 38574 | | |
| 38575 | | Position of 5nzr_COPI_coat_leaf_2017.cif R (#25.10) relative to |
| 38576 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 38577 | | Matrix rotation and translation |
| 38578 | | -0.57882830 0.81445493 -0.04026116 223.92057802 |
| 38579 | | -0.80981808 -0.57992238 -0.08879576 418.64146532 |
| 38580 | | -0.09566850 -0.01879328 0.99523582 159.85012424 |
| 38581 | | Axis 0.04303278 0.03406067 -0.99849289 |
| 38582 | | Axis point 224.39333634 152.88484856 0.00000000 |
| 38583 | | Rotation angle (degrees) 125.57424627 |
| 38584 | | Shift along axis -135.71407959 |
| 38585 | | |
| 38586 | | |
| 38587 | | > select subtract #25.10 |
| 38588 | | |
| 38589 | | Nothing selected |
| 38590 | | |
| 38591 | | > show #!26.1 models |
| 38592 | | |
| 38593 | | > select add #26.1 |
| 38594 | | |
| 38595 | | 1306 atoms, 1331 bonds, 3 pseudobonds, 161 residues, 2 models selected |
| 38596 | | |
| 38597 | | > view matrix models |
| 38598 | | > #26.1,-0.21464,0.16647,-0.9624,392.75,0.66418,0.74733,-0.01886,385.5,0.71609,-0.64326,-0.27097,291.62 |
| 38599 | | |
| 38600 | | > fitmap #25.10 inMap #34 |
| 38601 | | |
| 38602 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif R (#25.10) to map |
| 38603 | | relion_locres_filtered_20240326_GT.mrc (#34) using 635 atoms |
| 38604 | | average map value = 0.01241, steps = 80 |
| 38605 | | shifted from previous position = 0.0105 |
| 38606 | | rotated from previous position = 0.0343 degrees |
| 38607 | | atoms outside contour = 130, contour level = 0.0064458 |
| 38608 | | |
| 38609 | | Position of 5nzr_COPI_coat_leaf_2017.cif R (#25.10) relative to |
| 38610 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 38611 | | Matrix rotation and translation |
| 38612 | | -0.57907990 0.81427973 -0.04018689 223.96868603 |
| 38613 | | -0.80969368 -0.58017522 -0.08827713 418.62684340 |
| 38614 | | -0.09519771 -0.01858044 0.99528496 159.77660424 |
| 38615 | | Axis 0.04285338 0.03382370 -0.99850866 |
| 38616 | | Axis point 224.35071346 152.87171941 0.00000000 |
| 38617 | | Rotation angle (degrees) 125.59028400 |
| 38618 | | Shift along axis -135.78100180 |
| 38619 | | |
| 38620 | | |
| 38621 | | > fitmap #25.10 inMap #34 |
| 38622 | | |
| 38623 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif R (#25.10) to map |
| 38624 | | relion_locres_filtered_20240326_GT.mrc (#34) using 635 atoms |
| 38625 | | average map value = 0.01241, steps = 92 |
| 38626 | | shifted from previous position = 0.0183 |
| 38627 | | rotated from previous position = 0.0696 degrees |
| 38628 | | atoms outside contour = 132, contour level = 0.0064458 |
| 38629 | | |
| 38630 | | Position of 5nzr_COPI_coat_leaf_2017.cif R (#25.10) relative to |
| 38631 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 38632 | | Matrix rotation and translation |
| 38633 | | -0.57960053 0.81387247 -0.04092444 224.16631037 |
| 38634 | | -0.80934188 -0.58077628 -0.08754787 418.62643142 |
| 38635 | | -0.09502075 -0.01762093 0.99531932 159.58864347 |
| 38636 | | Axis 0.04301555 0.03327733 -0.99852005 |
| 38637 | | Axis point 224.34840220 152.81747393 0.00000000 |
| 38638 | | Rotation angle (degrees) 125.62859855 |
| 38639 | | Shift along axis -135.77905230 |
| 38640 | | |
| 38641 | | |
| 38642 | | > fitmap #25.10 inMap #34 |
| 38643 | | |
| 38644 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif R (#25.10) to map |
| 38645 | | relion_locres_filtered_20240326_GT.mrc (#34) using 635 atoms |
| 38646 | | average map value = 0.01241, steps = 112 |
| 38647 | | shifted from previous position = 0.0135 |
| 38648 | | rotated from previous position = 0.0187 degrees |
| 38649 | | atoms outside contour = 131, contour level = 0.0064458 |
| 38650 | | |
| 38651 | | Position of 5nzr_COPI_coat_leaf_2017.cif R (#25.10) relative to |
| 38652 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 38653 | | Matrix rotation and translation |
| 38654 | | -0.57948580 0.81395203 -0.04096688 224.15145479 |
| 38655 | | -0.80939248 -0.58066095 -0.08784456 418.63117192 |
| 38656 | | -0.09528913 -0.01774640 0.99529143 159.63962880 |
| 38657 | | Axis 0.04311703 0.03341335 -0.99851113 |
| 38658 | | Axis point 224.37355418 152.82261696 0.00000000 |
| 38659 | | Rotation angle (degrees) 125.62147319 |
| 38660 | | Shift along axis -135.74933155 |
| 38661 | | |
| 38662 | | |
| 38663 | | > fitmap #25.10 inMap #34 |
| 38664 | | |
| 38665 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif R (#25.10) to map |
| 38666 | | relion_locres_filtered_20240326_GT.mrc (#34) using 635 atoms |
| 38667 | | average map value = 0.01241, steps = 124 |
| 38668 | | shifted from previous position = 0.0264 |
| 38669 | | rotated from previous position = 0.0176 degrees |
| 38670 | | atoms outside contour = 131, contour level = 0.0064458 |
| 38671 | | |
| 38672 | | Position of 5nzr_COPI_coat_leaf_2017.cif R (#25.10) relative to |
| 38673 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 38674 | | Matrix rotation and translation |
| 38675 | | -0.57946360 0.81397614 -0.04080154 224.11340702 |
| 38676 | | -0.80944384 -0.58062769 -0.08759077 418.62341381 |
| 38677 | | -0.09498731 -0.01772911 0.99532059 159.61256565 |
| 38678 | | Axis 0.04296996 0.03332815 -0.99852031 |
| 38679 | | Axis point 224.34354252 152.82263380 0.00000000 |
| 38680 | | Rotation angle (degrees) 125.61849097 |
| 38681 | | Shift along axis -135.79430071 |
| 38682 | | |
| 38683 | | |
| 38684 | | > select subtract #26.1 |
| 38685 | | |
| 38686 | | Nothing selected |
| 38687 | | |
| 38688 | | > select add #26.1 |
| 38689 | | |
| 38690 | | 1306 atoms, 1331 bonds, 3 pseudobonds, 161 residues, 2 models selected |
| 38691 | | |
| 38692 | | > select subtract #26.1 |
| 38693 | | |
| 38694 | | Nothing selected |
| 38695 | | |
| 38696 | | > hide #25.10 models |
| 38697 | | |
| 38698 | | > hide #!26.1 models |
| 38699 | | |
| 38700 | | > show #!26.1 models |
| 38701 | | |
| 38702 | | > show #!26.2 models |
| 38703 | | |
| 38704 | | > hide #25.9 models |
| 38705 | | |
| 38706 | | > show #25.9 models |
| 38707 | | |
| 38708 | | > hide #!26.2 models |
| 38709 | | |
| 38710 | | > show #!26.2 models |
| 38711 | | |
| 38712 | | > hide #!26.2 models |
| 38713 | | |
| 38714 | | > show #!26.2 models |
| 38715 | | |
| 38716 | | > hide #!26.2 models |
| 38717 | | |
| 38718 | | > show #26.3 models |
| 38719 | | |
| 38720 | | > hide #26.3 models |
| 38721 | | |
| 38722 | | > show #26.3 models |
| 38723 | | |
| 38724 | | > hide #26.3 models |
| 38725 | | |
| 38726 | | > hide #!26.1 models |
| 38727 | | |
| 38728 | | > show #!26.1 models |
| 38729 | | |
| 38730 | | > show #!26.2 models |
| 38731 | | |
| 38732 | | > hide #!26.2 models |
| 38733 | | |
| 38734 | | > show #!26.2 models |
| 38735 | | |
| 38736 | | > fitmap #26.2 inMap #34 |
| 38737 | | |
| 38738 | | Fit molecule 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#26.2) to map |
| 38739 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2069 atoms |
| 38740 | | average map value = 0.01291, steps = 64 |
| 38741 | | shifted from previous position = 0.946 |
| 38742 | | rotated from previous position = 1.32 degrees |
| 38743 | | atoms outside contour = 709, contour level = 0.0064458 |
| 38744 | | |
| 38745 | | Position of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#26.2) relative to |
| 38746 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 38747 | | Matrix rotation and translation |
| 38748 | | -0.26676369 0.21060525 -0.94046933 331.59689306 |
| 38749 | | 0.69716374 0.71593433 -0.03742646 310.02523477 |
| 38750 | | 0.66543207 -0.66564514 -0.33781163 215.90163313 |
| 38751 | | Axis -0.35062015 -0.89628248 0.27155705 |
| 38752 | | Axis point -1.07432461 0.00000000 228.95265506 |
| 38753 | | Rotation angle (degrees) 116.37987233 |
| 38754 | | Shift along axis -335.50512764 |
| 38755 | | |
| 38756 | | |
| 38757 | | > hide #!25.7 models |
| 38758 | | |
| 38759 | | > show #!25.7 models |
| 38760 | | |
| 38761 | | > hide #!25.6 models |
| 38762 | | |
| 38763 | | > show #!25.6 models |
| 38764 | | |
| 38765 | | > hide #!25.6 models |
| 38766 | | |
| 38767 | | > show #!25.6 models |
| 38768 | | |
| 38769 | | > hide #!34 models |
| 38770 | | |
| 38771 | | > hide #!25.6 models |
| 38772 | | |
| 38773 | | > show #!25.6 models |
| 38774 | | |
| 38775 | | > hide #!25.6 models |
| 38776 | | |
| 38777 | | > show #!25.6 models |
| 38778 | | |
| 38779 | | > hide #!25.6 models |
| 38780 | | |
| 38781 | | > show #!25.6 models |
| 38782 | | |
| 38783 | | > hide #!25.6 models |
| 38784 | | |
| 38785 | | > show #!25.6 models |
| 38786 | | |
| 38787 | | > hide #!26.2 models |
| 38788 | | |
| 38789 | | > show #!26.2 models |
| 38790 | | |
| 38791 | | > hide #!26.2 models |
| 38792 | | |
| 38793 | | > show #!26.2 models |
| 38794 | | |
| 38795 | | > hide #!25.6 models |
| 38796 | | |
| 38797 | | > show #!25.6 models |
| 38798 | | |
| 38799 | | > fitmap #25.6 inMap #34 |
| 38800 | | |
| 38801 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif G (#25.6) to map |
| 38802 | | relion_locres_filtered_20240326_GT.mrc (#34) using 3190 atoms |
| 38803 | | average map value = 0.01344, steps = 60 |
| 38804 | | shifted from previous position = 0.0136 |
| 38805 | | rotated from previous position = 0.046 degrees |
| 38806 | | atoms outside contour = 1426, contour level = 0.0064458 |
| 38807 | | |
| 38808 | | Position of 5nzr_COPI_coat_leaf_2017.cif G (#25.6) relative to |
| 38809 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 38810 | | Matrix rotation and translation |
| 38811 | | -0.57150051 0.81986359 -0.03479709 221.54415607 |
| 38812 | | -0.81986949 -0.57226792 -0.01798424 410.34012380 |
| 38813 | | -0.03465788 0.01825107 0.99923256 151.14400112 |
| 38814 | | Axis 0.02209290 -0.00008488 -0.99975592 |
| 38815 | | Axis point 219.47799700 146.52998535 0.00000000 |
| 38816 | | Rotation angle (degrees) 124.90852780 |
| 38817 | | Shift along axis -146.24738522 |
| 38818 | | |
| 38819 | | |
| 38820 | | > fitmap #25.6 inMap #34 |
| 38821 | | |
| 38822 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif G (#25.6) to map |
| 38823 | | relion_locres_filtered_20240326_GT.mrc (#34) using 3190 atoms |
| 38824 | | average map value = 0.01344, steps = 60 |
| 38825 | | shifted from previous position = 0.00946 |
| 38826 | | rotated from previous position = 0.0223 degrees |
| 38827 | | atoms outside contour = 1426, contour level = 0.0064458 |
| 38828 | | |
| 38829 | | Position of 5nzr_COPI_coat_leaf_2017.cif G (#25.6) relative to |
| 38830 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 38831 | | Matrix rotation and translation |
| 38832 | | -0.57139144 0.81993964 -0.03479654 221.52527143 |
| 38833 | | -0.81995810 -0.57215219 -0.01762304 410.29097843 |
| 38834 | | -0.03435875 0.01846205 0.99923902 151.09642121 |
| 38835 | | Axis 0.02199915 -0.00026690 -0.99975795 |
| 38836 | | Axis point 219.45935637 146.48992317 0.00000000 |
| 38837 | | Rotation angle (degrees) 124.90044927 |
| 38838 | | Shift along axis -146.29598725 |
| 38839 | | |
| 38840 | | |
| 38841 | | > show #!34 models |
| 38842 | | |
| 38843 | | > hide #!26.2 models |
| 38844 | | |
| 38845 | | > show #!26.2 models |
| 38846 | | |
| 38847 | | > hide #!25.6 models |
| 38848 | | |
| 38849 | | > show #26.3 models |
| 38850 | | |
| 38851 | | > hide #26.3 models |
| 38852 | | |
| 38853 | | > hide #25.11 models |
| 38854 | | |
| 38855 | | > show #25.11 models |
| 38856 | | |
| 38857 | | > hide #!34 models |
| 38858 | | |
| 38859 | | > show #26.3 models |
| 38860 | | |
| 38861 | | > fitmap #26.3 inMap #34 |
| 38862 | | |
| 38863 | | Fit molecule 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#26.3) to map |
| 38864 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1128 atoms |
| 38865 | | average map value = 0.01093, steps = 80 |
| 38866 | | shifted from previous position = 0.986 |
| 38867 | | rotated from previous position = 0.899 degrees |
| 38868 | | atoms outside contour = 358, contour level = 0.0064458 |
| 38869 | | |
| 38870 | | Position of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#26.3) relative to |
| 38871 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 38872 | | Matrix rotation and translation |
| 38873 | | -0.25043210 0.19248870 -0.94880549 329.67320722 |
| 38874 | | 0.71012646 0.70264192 -0.04488574 309.43538649 |
| 38875 | | 0.65803052 -0.68501271 -0.31265541 214.49028655 |
| 38876 | | Axis -0.35455348 -0.88999420 0.28670916 |
| 38877 | | Axis point -6.48640813 0.00000000 232.40025471 |
| 38878 | | Rotation angle (degrees) 115.48170033 |
| 38879 | | Shift along axis -330.78615344 |
| 38880 | | |
| 38881 | | |
| 38882 | | > fitmap #25.11 inMap #34 |
| 38883 | | |
| 38884 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif Z (#25.11) to map |
| 38885 | | relion_locres_filtered_20240326_GT.mrc (#34) using 555 atoms |
| 38886 | | average map value = 0.01758, steps = 44 |
| 38887 | | shifted from previous position = 0.00184 |
| 38888 | | rotated from previous position = 0.0428 degrees |
| 38889 | | atoms outside contour = 19, contour level = 0.0064458 |
| 38890 | | |
| 38891 | | Position of 5nzr_COPI_coat_leaf_2017.cif Z (#25.11) relative to |
| 38892 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 38893 | | Matrix rotation and translation |
| 38894 | | -0.54660847 0.83480197 -0.06576359 221.78872090 |
| 38895 | | -0.83694728 -0.54718173 0.01055431 405.39457341 |
| 38896 | | -0.02717388 0.06080973 0.99777941 145.43800115 |
| 38897 | | Axis 0.03004001 -0.02306687 -0.99928250 |
| 38898 | | Axis point 221.76468855 139.85093267 0.00000000 |
| 38899 | | Rotation angle (degrees) 123.23028209 |
| 38900 | | Shift along axis -148.02229824 |
| 38901 | | |
| 38902 | | |
| 38903 | | > fitmap #25.11 inMap #34 |
| 38904 | | |
| 38905 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif Z (#25.11) to map |
| 38906 | | relion_locres_filtered_20240326_GT.mrc (#34) using 555 atoms |
| 38907 | | average map value = 0.01758, steps = 44 |
| 38908 | | shifted from previous position = 0.011 |
| 38909 | | rotated from previous position = 0.0592 degrees |
| 38910 | | atoms outside contour = 19, contour level = 0.0064458 |
| 38911 | | |
| 38912 | | Position of 5nzr_COPI_coat_leaf_2017.cif Z (#25.11) relative to |
| 38913 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 38914 | | Matrix rotation and translation |
| 38915 | | -0.54623363 0.83511331 -0.06491964 221.64637607 |
| 38916 | | -0.83721609 -0.54676420 0.01086763 405.33329553 |
| 38917 | | -0.02642003 0.06028804 0.99783131 145.44742845 |
| 38918 | | Axis 0.02953112 -0.02300541 -0.99929909 |
| 38919 | | Axis point 221.70559607 139.84686651 0.00000000 |
| 38920 | | Rotation angle (degrees) 123.20137237 |
| 38921 | | Shift along axis -148.12487531 |
| 38922 | | |
| 38923 | | |
| 38924 | | > show #!34 models |
| 38925 | | |
| 38926 | | > hide #!2 models |
| 38927 | | |
| 38928 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 38929 | | > dataset/Chimera sessions/20240406_leaf_fitting_v18.cxs" |
| 38930 | | |
| 38931 | | > close #25.11 |
| 38932 | | |
| 38933 | | > hide #!26.1 models |
| 38934 | | |
| 38935 | | > show #!26.1 models |
| 38936 | | |
| 38937 | | > hide #24 models |
| 38938 | | |
| 38939 | | > show #24 models |
| 38940 | | |
| 38941 | | > fitmap #24 inMap #34 |
| 38942 | | |
| 38943 | | Fit molecule 3kn1_Golph3_xtal.cif (#24) to map |
| 38944 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1934 atoms |
| 38945 | | average map value = 0.008452, steps = 44 |
| 38946 | | shifted from previous position = 0.0138 |
| 38947 | | rotated from previous position = 0.0468 degrees |
| 38948 | | atoms outside contour = 729, contour level = 0.0064458 |
| 38949 | | |
| 38950 | | Position of 3kn1_Golph3_xtal.cif (#24) relative to |
| 38951 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 38952 | | Matrix rotation and translation |
| 38953 | | 0.23357866 0.95002788 -0.20709425 197.36052025 |
| 38954 | | -0.00017108 -0.21294573 -0.97706401 258.07204149 |
| 38955 | | -0.97233789 0.22825674 -0.04957705 197.42047125 |
| 38956 | | Axis 0.70280508 0.44620249 -0.55404726 |
| 38957 | | Axis point 0.00000000 -45.38476117 254.49183049 |
| 38958 | | Rotation angle (degrees) 120.96217309 |
| 38959 | | Shift along axis 144.47809218 |
| 38960 | | |
| 38961 | | |
| 38962 | | > fitmap #24 inMap #34 |
| 38963 | | |
| 38964 | | Fit molecule 3kn1_Golph3_xtal.cif (#24) to map |
| 38965 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1934 atoms |
| 38966 | | average map value = 0.008452, steps = 48 |
| 38967 | | shifted from previous position = 0.0101 |
| 38968 | | rotated from previous position = 0.0527 degrees |
| 38969 | | atoms outside contour = 727, contour level = 0.0064458 |
| 38970 | | |
| 38971 | | Position of 3kn1_Golph3_xtal.cif (#24) relative to |
| 38972 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 38973 | | Matrix rotation and translation |
| 38974 | | 0.23410930 0.94979349 -0.20756967 197.35969318 |
| 38975 | | 0.00022632 -0.21355609 -0.97693078 258.11291282 |
| 38976 | | -0.97221026 0.22866161 -0.05021043 197.38370379 |
| 38977 | | Axis 0.70313895 0.44596216 -0.55381708 |
| 38978 | | Axis point 0.00000000 -45.18462452 254.34379884 |
| 38979 | | Rotation angle (degrees) 120.98599951 |
| 38980 | | Shift along axis 144.56541288 |
| 38981 | | |
| 38982 | | |
| 38983 | | > hide #24 models |
| 38984 | | |
| 38985 | | > show #24 models |
| 38986 | | |
| 38987 | | > show #29 models |
| 38988 | | |
| 38989 | | > hide #29 models |
| 38990 | | |
| 38991 | | > show #29 models |
| 38992 | | |
| 38993 | | > hide #29 models |
| 38994 | | |
| 38995 | | > hide #26.3 models |
| 38996 | | |
| 38997 | | > show #26.3 models |
| 38998 | | |
| 38999 | | > hide #!26.2 models |
| 39000 | | |
| 39001 | | > show #!26.2 models |
| 39002 | | |
| 39003 | | > show #27.1 models |
| 39004 | | |
| 39005 | | > hide #25.3 models |
| 39006 | | |
| 39007 | | > hide #27.1 models |
| 39008 | | |
| 39009 | | > show #27.1 models |
| 39010 | | |
| 39011 | | > hide #27.1 models |
| 39012 | | |
| 39013 | | > show #27.1 models |
| 39014 | | |
| 39015 | | > fitmap #27.1 inMap #34 |
| 39016 | | |
| 39017 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 39018 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms |
| 39019 | | average map value = 0.008658, steps = 44 |
| 39020 | | shifted from previous position = 0.0172 |
| 39021 | | rotated from previous position = 0.0592 degrees |
| 39022 | | atoms outside contour = 2878, contour level = 0.0064458 |
| 39023 | | |
| 39024 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to |
| 39025 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 39026 | | Matrix rotation and translation |
| 39027 | | 0.99798654 -0.02155831 0.05964989 -72.41704393 |
| 39028 | | 0.02038086 0.99958663 0.02027796 -76.19302071 |
| 39029 | | -0.06006239 -0.01902141 0.99801337 -69.77541800 |
| 39030 | | Axis -0.29594138 0.90148559 0.31582026 |
| 39031 | | Axis point -847.94280840 0.00000000 1529.19268245 |
| 39032 | | Rotation angle (degrees) 3.80708140 |
| 39033 | | Shift along axis -69.29220064 |
| 39034 | | |
| 39035 | | |
| 39036 | | > fitmap #27.1 inMap #34 |
| 39037 | | |
| 39038 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 39039 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms |
| 39040 | | average map value = 0.008658, steps = 48 |
| 39041 | | shifted from previous position = 0.0145 |
| 39042 | | rotated from previous position = 0.0556 degrees |
| 39043 | | atoms outside contour = 2881, contour level = 0.0064458 |
| 39044 | | |
| 39045 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to |
| 39046 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 39047 | | Matrix rotation and translation |
| 39048 | | 0.99803993 -0.02156149 0.05874854 -72.25761698 |
| 39049 | | 0.02042215 0.99959287 0.01992550 -76.13165864 |
| 39050 | | -0.05915425 -0.01868667 0.99807394 -69.83557161 |
| 39051 | | Axis -0.29480439 0.90018934 0.32054566 |
| 39052 | | Axis point -853.82266054 0.00000000 1550.80156420 |
| 39053 | | Rotation angle (degrees) 3.75486000 |
| 39054 | | Shift along axis -69.61653459 |
| 39055 | | |
| 39056 | | |
| 39057 | | > select add #27.1 |
| 39058 | | |
| 39059 | | 6538 atoms, 6591 bonds, 911 residues, 1 model selected |
| 39060 | | |
| 39061 | | > view matrix models |
| 39062 | | > #27.1,0.99735,-0.034033,0.064281,-7.3604,0.033414,0.99938,0.010672,1.0557,-0.064605,-0.0084954,0.99787,6.8613 |
| 39063 | | |
| 39064 | | > fitmap #27.1 inMap #34 |
| 39065 | | |
| 39066 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 39067 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms |
| 39068 | | average map value = 0.008658, steps = 68 |
| 39069 | | shifted from previous position = 2.62 |
| 39070 | | rotated from previous position = 0.0326 degrees |
| 39071 | | atoms outside contour = 2881, contour level = 0.0064458 |
| 39072 | | |
| 39073 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to |
| 39074 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 39075 | | Matrix rotation and translation |
| 39076 | | 0.99806168 -0.02186237 0.05826591 -72.14158603 |
| 39077 | | 0.02073299 0.99958662 0.01991793 -76.13839887 |
| 39078 | | -0.05867728 -0.01867130 0.99810238 -69.85512230 |
| 39079 | | Axis -0.29614711 0.89746245 0.32689149 |
| 39080 | | Axis point -852.22850225 0.00000000 1564.57377379 |
| 39081 | | Rotation angle (degrees) 3.73558851 |
| 39082 | | Shift along axis -69.80187603 |
| 39083 | | |
| 39084 | | |
| 39085 | | > fitmap #27.1 inMap #34 |
| 39086 | | |
| 39087 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 39088 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms |
| 39089 | | average map value = 0.008658, steps = 60 |
| 39090 | | shifted from previous position = 0.0033 |
| 39091 | | rotated from previous position = 0.02 degrees |
| 39092 | | atoms outside contour = 2881, contour level = 0.0064458 |
| 39093 | | |
| 39094 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to |
| 39095 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 39096 | | Matrix rotation and translation |
| 39097 | | 0.99808049 -0.02188794 0.05793316 -72.08240649 |
| 39098 | | 0.02077044 0.99958776 0.01982188 -76.12395187 |
| 39099 | | -0.05834313 -0.01858053 0.99812366 -69.87297509 |
| 39100 | | Axis -0.29615184 0.89669995 0.32897309 |
| 39101 | | Axis point -854.08403980 0.00000000 1573.25797163 |
| 39102 | | Rotation angle (degrees) 3.71741809 |
| 39103 | | Shift along axis -69.89933488 |
| 39104 | | |
| 39105 | | |
| 39106 | | > fitmap #27.1 inMap #34 |
| 39107 | | |
| 39108 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 39109 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms |
| 39110 | | average map value = 0.008658, steps = 48 |
| 39111 | | shifted from previous position = 0.0139 |
| 39112 | | rotated from previous position = 0.0534 degrees |
| 39113 | | atoms outside contour = 2880, contour level = 0.0064458 |
| 39114 | | |
| 39115 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to |
| 39116 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 39117 | | Matrix rotation and translation |
| 39118 | | 0.99803390 -0.02166884 0.05881153 -72.25698973 |
| 39119 | | 0.02052243 0.99958878 0.02002748 -76.14999383 |
| 39120 | | -0.05922132 -0.01878114 0.99806819 -69.82750912 |
| 39121 | | Axis -0.29575854 0.89952239 0.32153750 |
| 39122 | | Axis point -851.87721930 0.00000000 1550.05387539 |
| 39123 | | Rotation angle (degrees) 3.76179925 |
| 39124 | | Shift along axis -69.58016548 |
| 39125 | | |
| 39126 | | |
| 39127 | | > select subtract #27.1 |
| 39128 | | |
| 39129 | | Nothing selected |
| 39130 | | |
| 39131 | | > select add #27.2 |
| 39132 | | |
| 39133 | | 1407 atoms, 1415 bonds, 194 residues, 1 model selected |
| 39134 | | |
| 39135 | | > select subtract #27.2 |
| 39136 | | |
| 39137 | | Nothing selected |
| 39138 | | |
| 39139 | | > select add #27.2 |
| 39140 | | |
| 39141 | | 1407 atoms, 1415 bonds, 194 residues, 1 model selected |
| 39142 | | |
| 39143 | | > fitmap #27.1 inMap #34 |
| 39144 | | |
| 39145 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 39146 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms |
| 39147 | | average map value = 0.008658, steps = 48 |
| 39148 | | shifted from previous position = 0.00355 |
| 39149 | | rotated from previous position = 0.0108 degrees |
| 39150 | | atoms outside contour = 2881, contour level = 0.0064458 |
| 39151 | | |
| 39152 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to |
| 39153 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 39154 | | Matrix rotation and translation |
| 39155 | | 0.99804086 -0.02153848 0.05874132 -72.25917623 |
| 39156 | | 0.02040049 0.99959374 0.01990428 -76.12688742 |
| 39157 | | -0.05914616 -0.01866693 0.99807479 -69.83738339 |
| 39158 | | Axis -0.29458199 0.90034858 0.32030280 |
| 39159 | | Axis point -854.19504449 0.00000000 1550.79158135 |
| 39160 | | Rotation angle (degrees) 3.75370689 |
| 39161 | | Shift along axis -69.62359268 |
| 39162 | | |
| 39163 | | |
| 39164 | | > select subtract #27.2 |
| 39165 | | |
| 39166 | | Nothing selected |
| 39167 | | |
| 39168 | | > hide #!30 models |
| 39169 | | |
| 39170 | | > show #!30 models |
| 39171 | | |
| 39172 | | > show #25.1 models |
| 39173 | | |
| 39174 | | > hide #!34 models |
| 39175 | | |
| 39176 | | > ui tool show Matchmaker |
| 39177 | | |
| 39178 | | > matchmaker #27.2 to #25.1 |
| 39179 | | |
| 39180 | | Parameters |
| 39181 | | --- |
| 39182 | | Chain pairing | bb |
| 39183 | | Alignment algorithm | Needleman-Wunsch |
| 39184 | | Similarity matrix | BLOSUM-62 |
| 39185 | | SS fraction | 0.3 |
| 39186 | | Gap open (HH/SS/other) | 18/18/6 |
| 39187 | | Gap extend | 1 |
| 39188 | | SS matrix | | | H | S | O |
| 39189 | | ---|---|---|--- |
| 39190 | | H | 6 | -9 | -6 |
| 39191 | | S | | 6 | -6 |
| 39192 | | O | | | 4 |
| 39193 | | Iteration cutoff | 2 |
| 39194 | | |
| 39195 | | Matchmaker 5nzr_COPI_coat_leaf_2017.cif A, chain A (#25.1) with |
| 39196 | | 3mkq_yeast_alpha_betaprimeCOPI.cif B, chain B (#27.2), sequence alignment |
| 39197 | | score = 418.9 |
| 39198 | | RMSD between 62 pruned atom pairs is 1.400 angstroms; (across all 175 pairs: |
| 39199 | | 3.710) |
| 39200 | | |
| 39201 | | |
| 39202 | | > hide #25.1 models |
| 39203 | | |
| 39204 | | > show #25.1 models |
| 39205 | | |
| 39206 | | > hide #25.1 models |
| 39207 | | |
| 39208 | | > show #!34 models |
| 39209 | | |
| 39210 | | > fitmap #27.2 inMap #34 |
| 39211 | | |
| 39212 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) to map |
| 39213 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1407 atoms |
| 39214 | | average map value = 0.009081, steps = 88 |
| 39215 | | shifted from previous position = 2.49 |
| 39216 | | rotated from previous position = 10 degrees |
| 39217 | | atoms outside contour = 654, contour level = 0.0064458 |
| 39218 | | |
| 39219 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) relative to |
| 39220 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 39221 | | Matrix rotation and translation |
| 39222 | | 0.98954467 0.01425451 -0.14352057 -45.77357441 |
| 39223 | | 0.02436544 0.96427860 0.26376713 -113.41670488 |
| 39224 | | 0.14215368 -0.26450630 0.95384944 -31.24973114 |
| 39225 | | Axis -0.87949755 -0.47560561 0.01683320 |
| 39226 | | Axis point 0.00000000 -165.74194167 238.63704483 |
| 39227 | | Rotation angle (degrees) 17.47723437 |
| 39228 | | Shift along axis 93.67333471 |
| 39229 | | |
| 39230 | | |
| 39231 | | > fitmap #27.2 inMap #34 |
| 39232 | | |
| 39233 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) to map |
| 39234 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1407 atoms |
| 39235 | | average map value = 0.009081, steps = 44 |
| 39236 | | shifted from previous position = 0.0121 |
| 39237 | | rotated from previous position = 0.0235 degrees |
| 39238 | | atoms outside contour = 654, contour level = 0.0064458 |
| 39239 | | |
| 39240 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) relative to |
| 39241 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 39242 | | Matrix rotation and translation |
| 39243 | | 0.98950284 0.01456273 -0.14377777 -45.78107200 |
| 39244 | | 0.02414939 0.96425692 0.26386627 -113.43225746 |
| 39245 | | 0.14248133 -0.26456857 0.95378328 -31.21802132 |
| 39246 | | Axis -0.87916370 -0.47625287 0.01594945 |
| 39247 | | Axis point 0.00000000 -165.26762153 238.24622898 |
| 39248 | | Rotation angle (degrees) 17.48959966 |
| 39249 | | Shift along axis 93.77358484 |
| 39250 | | |
| 39251 | | |
| 39252 | | > fitmap #27.2 inMap #34 |
| 39253 | | |
| 39254 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) to map |
| 39255 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1407 atoms |
| 39256 | | average map value = 0.009081, steps = 44 |
| 39257 | | shifted from previous position = 0.0121 |
| 39258 | | rotated from previous position = 0.0235 degrees |
| 39259 | | atoms outside contour = 654, contour level = 0.0064458 |
| 39260 | | |
| 39261 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) relative to |
| 39262 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 39263 | | Matrix rotation and translation |
| 39264 | | 0.98950284 0.01456273 -0.14377777 -45.78107200 |
| 39265 | | 0.02414939 0.96425692 0.26386627 -113.43225746 |
| 39266 | | 0.14248133 -0.26456857 0.95378328 -31.21802132 |
| 39267 | | Axis -0.87916370 -0.47625287 0.01594945 |
| 39268 | | Axis point 0.00000000 -165.26762153 238.24622898 |
| 39269 | | Rotation angle (degrees) 17.48959966 |
| 39270 | | Shift along axis 93.77358484 |
| 39271 | | |
| 39272 | | |
| 39273 | | > fitmap #27.2 inMap #34 |
| 39274 | | |
| 39275 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) to map |
| 39276 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1407 atoms |
| 39277 | | average map value = 0.009081, steps = 88 |
| 39278 | | shifted from previous position = 2.49 |
| 39279 | | rotated from previous position = 10 degrees |
| 39280 | | atoms outside contour = 654, contour level = 0.0064458 |
| 39281 | | |
| 39282 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) relative to |
| 39283 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 39284 | | Matrix rotation and translation |
| 39285 | | 0.98954467 0.01425451 -0.14352057 -45.77357441 |
| 39286 | | 0.02436544 0.96427860 0.26376713 -113.41670488 |
| 39287 | | 0.14215368 -0.26450630 0.95384944 -31.24973114 |
| 39288 | | Axis -0.87949755 -0.47560561 0.01683320 |
| 39289 | | Axis point 0.00000000 -165.74194167 238.63704483 |
| 39290 | | Rotation angle (degrees) 17.47723437 |
| 39291 | | Shift along axis 93.67333471 |
| 39292 | | |
| 39293 | | |
| 39294 | | > select add #30 |
| 39295 | | |
| 39296 | | 2737 atoms, 2622 bonds, 1 pseudobond, 505 residues, 2 models selected |
| 39297 | | |
| 39298 | | > select subtract #30 |
| 39299 | | |
| 39300 | | Nothing selected |
| 39301 | | |
| 39302 | | > show #25.1 models |
| 39303 | | |
| 39304 | | > hide #25.1 models |
| 39305 | | |
| 39306 | | > show #25.1 models |
| 39307 | | |
| 39308 | | > hide #25.1 models |
| 39309 | | |
| 39310 | | > show #25.1 models |
| 39311 | | |
| 39312 | | > hide #!30 models |
| 39313 | | |
| 39314 | | > hide #27.2 models |
| 39315 | | |
| 39316 | | > select add #25.1 |
| 39317 | | |
| 39318 | | 3251 atoms, 3250 bonds, 813 residues, 1 model selected |
| 39319 | | |
| 39320 | | > view matrix models |
| 39321 | | > #25.1,-0.49739,0.85348,-0.15546,287.51,-0.86504,-0.50149,0.014511,475.92,-0.065576,0.1417,0.98774,223.57 |
| 39322 | | |
| 39323 | | > fitmap #25.1 inMap #34 |
| 39324 | | |
| 39325 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif A (#25.1) to map |
| 39326 | | relion_locres_filtered_20240326_GT.mrc (#34) using 3251 atoms |
| 39327 | | average map value = 0.01111, steps = 68 |
| 39328 | | shifted from previous position = 2.11 |
| 39329 | | rotated from previous position = 0.00909 degrees |
| 39330 | | atoms outside contour = 983, contour level = 0.0064458 |
| 39331 | | |
| 39332 | | Position of 5nzr_COPI_coat_leaf_2017.cif A (#25.1) relative to |
| 39333 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 39334 | | Matrix rotation and translation |
| 39335 | | -0.50773664 0.84633078 -0.16102079 226.47717411 |
| 39336 | | -0.85942981 -0.51057143 0.02640457 400.52408444 |
| 39337 | | -0.05986562 0.15179263 0.98659773 146.90785450 |
| 39338 | | Axis 0.07318292 -0.05903935 -0.99556949 |
| 39339 | | Axis point 229.74919439 128.44033942 0.00000000 |
| 39340 | | Rotation angle (degrees) 121.05463313 |
| 39341 | | Shift along axis -153.32940131 |
| 39342 | | |
| 39343 | | |
| 39344 | | > fitmap #25.1 inMap #34 |
| 39345 | | |
| 39346 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif A (#25.1) to map |
| 39347 | | relion_locres_filtered_20240326_GT.mrc (#34) using 3251 atoms |
| 39348 | | average map value = 0.01111, steps = 48 |
| 39349 | | shifted from previous position = 0.0158 |
| 39350 | | rotated from previous position = 0.0116 degrees |
| 39351 | | atoms outside contour = 981, contour level = 0.0064458 |
| 39352 | | |
| 39353 | | Position of 5nzr_COPI_coat_leaf_2017.cif A (#25.1) relative to |
| 39354 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 39355 | | Matrix rotation and translation |
| 39356 | | -0.50788469 0.84622701 -0.16109926 226.51308649 |
| 39357 | | -0.85933646 -0.51072952 0.02638566 400.51616908 |
| 39358 | | -0.05994989 0.15183934 0.98658543 146.92713917 |
| 39359 | | Axis 0.07322941 -0.05904258 -0.99556588 |
| 39360 | | Axis point 229.74511440 128.43760322 0.00000000 |
| 39361 | | Rotation angle (degrees) 121.06528239 |
| 39362 | | Shift along axis -153.33573453 |
| 39363 | | |
| 39364 | | |
| 39365 | | > select subtract #25.1 |
| 39366 | | |
| 39367 | | Nothing selected |
| 39368 | | |
| 39369 | | > hide #25.1 models |
| 39370 | | |
| 39371 | | > show #27.2 models |
| 39372 | | |
| 39373 | | > fitmap #27.2 inMap #34 |
| 39374 | | |
| 39375 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) to map |
| 39376 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1407 atoms |
| 39377 | | average map value = 0.009081, steps = 88 |
| 39378 | | shifted from previous position = 2.49 |
| 39379 | | rotated from previous position = 10 degrees |
| 39380 | | atoms outside contour = 654, contour level = 0.0064458 |
| 39381 | | |
| 39382 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) relative to |
| 39383 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 39384 | | Matrix rotation and translation |
| 39385 | | 0.98954467 0.01425451 -0.14352057 -45.77357441 |
| 39386 | | 0.02436544 0.96427860 0.26376713 -113.41670488 |
| 39387 | | 0.14215368 -0.26450630 0.95384944 -31.24973114 |
| 39388 | | Axis -0.87949755 -0.47560561 0.01683320 |
| 39389 | | Axis point 0.00000000 -165.74194167 238.63704483 |
| 39390 | | Rotation angle (degrees) 17.47723437 |
| 39391 | | Shift along axis 93.67333471 |
| 39392 | | |
| 39393 | | |
| 39394 | | > hide #27.2 models |
| 39395 | | |
| 39396 | | > show #27.2 models |
| 39397 | | |
| 39398 | | > show #!30 models |
| 39399 | | |
| 39400 | | > hide #!30 models |
| 39401 | | |
| 39402 | | > hide #27.2 models |
| 39403 | | |
| 39404 | | > show #27.2 models |
| 39405 | | |
| 39406 | | > close #35 |
| 39407 | | |
| 39408 | | > close #36 |
| 39409 | | |
| 39410 | | > hide #25.5 models |
| 39411 | | |
| 39412 | | > show #25.5 models |
| 39413 | | |
| 39414 | | > hide #25.5 models |
| 39415 | | |
| 39416 | | > show #25.5 models |
| 39417 | | |
| 39418 | | > hide #25.5 models |
| 39419 | | |
| 39420 | | > show #25.5 models |
| 39421 | | |
| 39422 | | > hide #25.5 models |
| 39423 | | |
| 39424 | | > show #25.5 models |
| 39425 | | |
| 39426 | | > hide #25.5 models |
| 39427 | | |
| 39428 | | > show #25.5 models |
| 39429 | | |
| 39430 | | > hide #25.5 models |
| 39431 | | |
| 39432 | | > show #25.5 models |
| 39433 | | |
| 39434 | | > hide #25.5 models |
| 39435 | | |
| 39436 | | > show #25.5 models |
| 39437 | | |
| 39438 | | > combine #26.1 |
| 39439 | | |
| 39440 | | > hide #!35 models |
| 39441 | | |
| 39442 | | > show #!35 models |
| 39443 | | |
| 39444 | | > select add #35 |
| 39445 | | |
| 39446 | | 1306 atoms, 1331 bonds, 3 pseudobonds, 161 residues, 2 models selected |
| 39447 | | |
| 39448 | | > hide #!34 models |
| 39449 | | |
| 39450 | | > select add #25.5 |
| 39451 | | |
| 39452 | | 1941 atoms, 1965 bonds, 3 pseudobonds, 320 residues, 3 models selected |
| 39453 | | |
| 39454 | | > select subtract #25.5 |
| 39455 | | |
| 39456 | | 1306 atoms, 1331 bonds, 3 pseudobonds, 161 residues, 2 models selected |
| 39457 | | |
| 39458 | | > select add #25.5 |
| 39459 | | |
| 39460 | | 1941 atoms, 1965 bonds, 3 pseudobonds, 320 residues, 3 models selected |
| 39461 | | |
| 39462 | | > select subtract #25.5 |
| 39463 | | |
| 39464 | | 1306 atoms, 1331 bonds, 3 pseudobonds, 161 residues, 2 models selected |
| 39465 | | |
| 39466 | | > matchmaker #!35 to #25.5 |
| 39467 | | |
| 39468 | | Parameters |
| 39469 | | --- |
| 39470 | | Chain pairing | bb |
| 39471 | | Alignment algorithm | Needleman-Wunsch |
| 39472 | | Similarity matrix | BLOSUM-62 |
| 39473 | | SS fraction | 0.3 |
| 39474 | | Gap open (HH/SS/other) | 18/18/6 |
| 39475 | | Gap extend | 1 |
| 39476 | | SS matrix | | | H | S | O |
| 39477 | | ---|---|---|--- |
| 39478 | | H | 6 | -9 | -6 |
| 39479 | | S | | 6 | -6 |
| 39480 | | O | | | 4 |
| 39481 | | Iteration cutoff | 2 |
| 39482 | | |
| 39483 | | Matchmaker 5nzr_COPI_coat_leaf_2017.cif F, chain F (#25.5) with copy of |
| 39484 | | 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A, chain A (#35), sequence alignment |
| 39485 | | score = 720 |
| 39486 | | RMSD between 92 pruned atom pairs is 1.327 angstroms; (across all 159 pairs: |
| 39487 | | 2.577) |
| 39488 | | |
| 39489 | | |
| 39490 | | > show #!34 models |
| 39491 | | |
| 39492 | | > close #25.5 |
| 39493 | | |
| 39494 | | > fitmap #35 inMap #34 |
| 39495 | | |
| 39496 | | Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#35) to map |
| 39497 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1306 atoms |
| 39498 | | average map value = 0.008638, steps = 44 |
| 39499 | | shifted from previous position = 0.306 |
| 39500 | | rotated from previous position = 3.66 degrees |
| 39501 | | atoms outside contour = 565, contour level = 0.0064458 |
| 39502 | | |
| 39503 | | Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#35) relative |
| 39504 | | to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 39505 | | Matrix rotation and translation |
| 39506 | | -0.33621727 0.36097706 0.86985832 201.02429891 |
| 39507 | | -0.22646712 -0.92751492 0.29736964 179.03665203 |
| 39508 | | 0.91415019 -0.09701350 0.39359598 210.27410806 |
| 39509 | | Axis -0.55630275 -0.06247653 -0.82862774 |
| 39510 | | Axis point 47.66462041 77.64958055 0.00000000 |
| 39511 | | Rotation angle (degrees) 159.23915181 |
| 39512 | | Shift along axis -297.25491863 |
| 39513 | | |
| 39514 | | |
| 39515 | | > fitmap #35 inMap #34 |
| 39516 | | |
| 39517 | | Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#35) to map |
| 39518 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1306 atoms |
| 39519 | | average map value = 0.008638, steps = 48 |
| 39520 | | shifted from previous position = 0.034 |
| 39521 | | rotated from previous position = 0.0754 degrees |
| 39522 | | atoms outside contour = 565, contour level = 0.0064458 |
| 39523 | | |
| 39524 | | Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#35) relative |
| 39525 | | to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 39526 | | Matrix rotation and translation |
| 39527 | | -0.33622679 0.36044176 0.87007659 200.96371480 |
| 39528 | | -0.22735855 -0.92760278 0.29641384 179.04249014 |
| 39529 | | 0.91392539 -0.09815708 0.39383443 210.21005922 |
| 39530 | | Axis -0.55627570 -0.06181911 -0.82869521 |
| 39531 | | Axis point 47.69710519 77.73084221 0.00000000 |
| 39532 | | Rotation angle (degrees) 159.22775321 |
| 39533 | | Shift along axis -297.05954698 |
| 39534 | | |
| 39535 | | |
| 39536 | | > fitmap #35 inMap #34 |
| 39537 | | |
| 39538 | | Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#35) to map |
| 39539 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1306 atoms |
| 39540 | | average map value = 0.008638, steps = 48 |
| 39541 | | shifted from previous position = 0.0123 |
| 39542 | | rotated from previous position = 0.0415 degrees |
| 39543 | | atoms outside contour = 562, contour level = 0.0064458 |
| 39544 | | |
| 39545 | | Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#35) relative |
| 39546 | | to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 39547 | | Matrix rotation and translation |
| 39548 | | -0.33610588 0.36049797 0.87010001 200.95884938 |
| 39549 | | -0.22803367 -0.92750642 0.29619667 179.05460852 |
| 39550 | | 0.91380166 -0.09885865 0.39394604 210.16812948 |
| 39551 | | Axis -0.55627911 -0.06153647 -0.82871395 |
| 39552 | | Axis point 47.74392439 77.76496889 0.00000000 |
| 39553 | | Rotation angle (degrees) 159.20120342 |
| 39554 | | Shift along axis -296.97686052 |
| 39555 | | |
| 39556 | | |
| 39557 | | > hide #25.9 models |
| 39558 | | |
| 39559 | | > show #25.9 models |
| 39560 | | |
| 39561 | | > select subtract #35 |
| 39562 | | |
| 39563 | | Nothing selected |
| 39564 | | |
| 39565 | | > hide #!34 models |
| 39566 | | |
| 39567 | | > show #!34 models |
| 39568 | | |
| 39569 | | > hide #!35 models |
| 39570 | | |
| 39571 | | > show #!35 models |
| 39572 | | |
| 39573 | | > show #37 models |
| 39574 | | |
| 39575 | | > hide #37 models |
| 39576 | | |
| 39577 | | > show #37 models |
| 39578 | | |
| 39579 | | > combine #26.1 |
| 39580 | | |
| 39581 | | > matchmaker #!36 to #37 |
| 39582 | | |
| 39583 | | Parameters |
| 39584 | | --- |
| 39585 | | Chain pairing | bb |
| 39586 | | Alignment algorithm | Needleman-Wunsch |
| 39587 | | Similarity matrix | BLOSUM-62 |
| 39588 | | SS fraction | 0.3 |
| 39589 | | Gap open (HH/SS/other) | 18/18/6 |
| 39590 | | Gap extend | 1 |
| 39591 | | SS matrix | | | H | S | O |
| 39592 | | ---|---|---|--- |
| 39593 | | H | 6 | -9 | -6 |
| 39594 | | S | | 6 | -6 |
| 39595 | | O | | | 4 |
| 39596 | | Iteration cutoff | 2 |
| 39597 | | |
| 39598 | | Matchmaker copy of 5nzr_COPI_coat_leaf_2017.cif F, chain F (#37) with copy of |
| 39599 | | 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A, chain A (#36), sequence alignment |
| 39600 | | score = 720 |
| 39601 | | RMSD between 92 pruned atom pairs is 1.327 angstroms; (across all 159 pairs: |
| 39602 | | 2.577) |
| 39603 | | |
| 39604 | | |
| 39605 | | > fitmap #36 inMap #34 |
| 39606 | | |
| 39607 | | Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#36) to map |
| 39608 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1306 atoms |
| 39609 | | average map value = 0.007274, steps = 68 |
| 39610 | | shifted from previous position = 1.09 |
| 39611 | | rotated from previous position = 1.54 degrees |
| 39612 | | atoms outside contour = 617, contour level = 0.0064458 |
| 39613 | | |
| 39614 | | Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#36) relative |
| 39615 | | to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 39616 | | Matrix rotation and translation |
| 39617 | | 0.11537320 0.75636603 0.64389397 234.64544426 |
| 39618 | | 0.67225004 -0.53667322 0.50996247 244.70048176 |
| 39619 | | 0.73127895 0.37402175 -0.57038480 234.38875714 |
| 39620 | | Axis -0.74616702 -0.47964867 -0.46170547 |
| 39621 | | Axis point 0.00000000 48.44393250 42.99244610 |
| 39622 | | Rotation angle (degrees) 174.77352811 |
| 39623 | | Shift along axis -400.67352208 |
| 39624 | | |
| 39625 | | |
| 39626 | | > select add #37 |
| 39627 | | |
| 39628 | | 635 atoms, 634 bonds, 159 residues, 1 model selected |
| 39629 | | |
| 39630 | | > select subtract #37 |
| 39631 | | |
| 39632 | | Nothing selected |
| 39633 | | |
| 39634 | | > hide #!34 models |
| 39635 | | |
| 39636 | | > select add #36 |
| 39637 | | |
| 39638 | | 1306 atoms, 1331 bonds, 3 pseudobonds, 161 residues, 2 models selected |
| 39639 | | |
| 39640 | | > select subtract #36 |
| 39641 | | |
| 39642 | | Nothing selected |
| 39643 | | |
| 39644 | | > select add #36 |
| 39645 | | |
| 39646 | | 1306 atoms, 1331 bonds, 3 pseudobonds, 161 residues, 2 models selected |
| 39647 | | |
| 39648 | | > select subtract #36 |
| 39649 | | |
| 39650 | | Nothing selected |
| 39651 | | |
| 39652 | | > select add #37 |
| 39653 | | |
| 39654 | | 635 atoms, 634 bonds, 159 residues, 1 model selected |
| 39655 | | |
| 39656 | | > select subtract #37 |
| 39657 | | |
| 39658 | | Nothing selected |
| 39659 | | |
| 39660 | | > matchmaker #!36 to #37 |
| 39661 | | |
| 39662 | | Parameters |
| 39663 | | --- |
| 39664 | | Chain pairing | bb |
| 39665 | | Alignment algorithm | Needleman-Wunsch |
| 39666 | | Similarity matrix | BLOSUM-62 |
| 39667 | | SS fraction | 0.3 |
| 39668 | | Gap open (HH/SS/other) | 18/18/6 |
| 39669 | | Gap extend | 1 |
| 39670 | | SS matrix | | | H | S | O |
| 39671 | | ---|---|---|--- |
| 39672 | | H | 6 | -9 | -6 |
| 39673 | | S | | 6 | -6 |
| 39674 | | O | | | 4 |
| 39675 | | Iteration cutoff | 2 |
| 39676 | | |
| 39677 | | Matchmaker copy of 5nzr_COPI_coat_leaf_2017.cif F, chain F (#37) with copy of |
| 39678 | | 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A, chain A (#36), sequence alignment |
| 39679 | | score = 720 |
| 39680 | | RMSD between 92 pruned atom pairs is 1.327 angstroms; (across all 159 pairs: |
| 39681 | | 2.577) |
| 39682 | | |
| 39683 | | |
| 39684 | | > matchmaker #!36 to #37 |
| 39685 | | |
| 39686 | | Parameters |
| 39687 | | --- |
| 39688 | | Chain pairing | bb |
| 39689 | | Alignment algorithm | Needleman-Wunsch |
| 39690 | | Similarity matrix | BLOSUM-62 |
| 39691 | | SS fraction | 0.3 |
| 39692 | | Gap open (HH/SS/other) | 18/18/6 |
| 39693 | | Gap extend | 1 |
| 39694 | | SS matrix | | | H | S | O |
| 39695 | | ---|---|---|--- |
| 39696 | | H | 6 | -9 | -6 |
| 39697 | | S | | 6 | -6 |
| 39698 | | O | | | 4 |
| 39699 | | Iteration cutoff | 2 |
| 39700 | | |
| 39701 | | Matchmaker copy of 5nzr_COPI_coat_leaf_2017.cif F, chain F (#37) with copy of |
| 39702 | | 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A, chain A (#36), sequence alignment |
| 39703 | | score = 720 |
| 39704 | | RMSD between 92 pruned atom pairs is 1.327 angstroms; (across all 159 pairs: |
| 39705 | | 2.577) |
| 39706 | | |
| 39707 | | |
| 39708 | | > fitmap #36 inMap #34 |
| 39709 | | |
| 39710 | | Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#36) to map |
| 39711 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1306 atoms |
| 39712 | | average map value = 0.007274, steps = 68 |
| 39713 | | shifted from previous position = 1.09 |
| 39714 | | rotated from previous position = 1.54 degrees |
| 39715 | | atoms outside contour = 617, contour level = 0.0064458 |
| 39716 | | |
| 39717 | | Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#36) relative |
| 39718 | | to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 39719 | | Matrix rotation and translation |
| 39720 | | 0.11537320 0.75636603 0.64389397 234.64544426 |
| 39721 | | 0.67225004 -0.53667322 0.50996247 244.70048177 |
| 39722 | | 0.73127895 0.37402175 -0.57038480 234.38875714 |
| 39723 | | Axis -0.74616702 -0.47964867 -0.46170547 |
| 39724 | | Axis point 0.00000000 48.44393252 42.99244612 |
| 39725 | | Rotation angle (degrees) 174.77352811 |
| 39726 | | Shift along axis -400.67352206 |
| 39727 | | |
| 39728 | | |
| 39729 | | > close #37 |
| 39730 | | |
| 39731 | | > show #!34 models |
| 39732 | | |
| 39733 | | > fitmap #36 inMap #34 |
| 39734 | | |
| 39735 | | Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#36) to map |
| 39736 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1306 atoms |
| 39737 | | average map value = 0.007274, steps = 40 |
| 39738 | | shifted from previous position = 0.00738 |
| 39739 | | rotated from previous position = 0.0209 degrees |
| 39740 | | atoms outside contour = 617, contour level = 0.0064458 |
| 39741 | | |
| 39742 | | Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#36) relative |
| 39743 | | to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 39744 | | Matrix rotation and translation |
| 39745 | | 0.11505990 0.75631839 0.64400598 234.64753159 |
| 39746 | | 0.67216010 -0.53663003 0.51012645 244.70925801 |
| 39747 | | 0.73141097 0.37418003 -0.57011164 234.40153165 |
| 39748 | | Axis -0.74606159 -0.47967061 -0.46185301 |
| 39749 | | Axis point 0.00000000 48.43223574 42.96460006 |
| 39750 | | Rotation angle (degrees) 174.77256767 |
| 39751 | | Shift along axis -400.70040380 |
| 39752 | | |
| 39753 | | |
| 39754 | | > fitmap #36 inMap #34 |
| 39755 | | |
| 39756 | | Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#36) to map |
| 39757 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1306 atoms |
| 39758 | | average map value = 0.007274, steps = 40 |
| 39759 | | shifted from previous position = 0.00299 |
| 39760 | | rotated from previous position = 0.014 degrees |
| 39761 | | atoms outside contour = 617, contour level = 0.0064458 |
| 39762 | | |
| 39763 | | Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#36) relative |
| 39764 | | to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 39765 | | Matrix rotation and translation |
| 39766 | | 0.11491296 0.75620763 0.64416227 234.64227089 |
| 39767 | | 0.67213072 -0.53667324 0.51011971 244.70806988 |
| 39768 | | 0.73146107 0.37434188 -0.56994109 234.41059083 |
| 39769 | | Axis -0.74601371 -0.47965198 -0.46194969 |
| 39770 | | Axis point 0.00000000 48.42873539 42.95258985 |
| 39771 | | Rotation angle (degrees) 174.77873247 |
| 39772 | | Shift along axis -400.70696272 |
| 39773 | | |
| 39774 | | |
| 39775 | | > select add #35 |
| 39776 | | |
| 39777 | | 1306 atoms, 1331 bonds, 3 pseudobonds, 161 residues, 2 models selected |
| 39778 | | |
| 39779 | | > fitmap #35 inMap #34 |
| 39780 | | |
| 39781 | | Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#35) to map |
| 39782 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1306 atoms |
| 39783 | | average map value = 0.008638, steps = 60 |
| 39784 | | shifted from previous position = 0.021 |
| 39785 | | rotated from previous position = 0.0989 degrees |
| 39786 | | atoms outside contour = 565, contour level = 0.0064458 |
| 39787 | | |
| 39788 | | Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#35) relative |
| 39789 | | to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 39790 | | Matrix rotation and translation |
| 39791 | | -0.33695386 0.36047522 0.86978141 200.97071078 |
| 39792 | | -0.22665166 -0.92769340 0.29667147 179.03519218 |
| 39793 | | 0.91383320 -0.09717280 0.39429218 210.27309495 |
| 39794 | | Axis -0.55599565 -0.06218854 -0.82885549 |
| 39795 | | Axis point 47.68614232 77.68205036 0.00000000 |
| 39796 | | Rotation angle (degrees) 159.25684744 |
| 39797 | | Shift along axis -297.15878789 |
| 39798 | | |
| 39799 | | |
| 39800 | | > fitmap #35 inMap #34 |
| 39801 | | |
| 39802 | | Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#35) to map |
| 39803 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1306 atoms |
| 39804 | | average map value = 0.008638, steps = 40 |
| 39805 | | shifted from previous position = 0.03 |
| 39806 | | rotated from previous position = 0.0831 degrees |
| 39807 | | atoms outside contour = 564, contour level = 0.0064458 |
| 39808 | | |
| 39809 | | Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#35) relative |
| 39810 | | to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 39811 | | Matrix rotation and translation |
| 39812 | | -0.33559289 0.36077052 0.87018506 201.01608465 |
| 39813 | | -0.22676988 -0.92753054 0.29709005 179.02852543 |
| 39814 | | 0.91430456 -0.09763045 0.39308454 210.23157936 |
| 39815 | | Axis -0.55657709 -0.06221087 -0.82846349 |
| 39816 | | Axis point 47.64467346 77.68273633 0.00000000 |
| 39817 | | Rotation angle (degrees) 159.23128706 |
| 39818 | | Shift along axis -297.18765431 |
| 39819 | | |
| 39820 | | |
| 39821 | | > select subtract #35 |
| 39822 | | |
| 39823 | | Nothing selected |
| 39824 | | |
| 39825 | | > select add #36 |
| 39826 | | |
| 39827 | | 1306 atoms, 1331 bonds, 3 pseudobonds, 161 residues, 2 models selected |
| 39828 | | |
| 39829 | | > fitmap #35 inMap #34 |
| 39830 | | |
| 39831 | | Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#35) to map |
| 39832 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1306 atoms |
| 39833 | | average map value = 0.008638, steps = 48 |
| 39834 | | shifted from previous position = 0.00599 |
| 39835 | | rotated from previous position = 0.0771 degrees |
| 39836 | | atoms outside contour = 564, contour level = 0.0064458 |
| 39837 | | |
| 39838 | | Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#35) relative |
| 39839 | | to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 39840 | | Matrix rotation and translation |
| 39841 | | -0.33674425 0.36094457 0.86966793 201.01956439 |
| 39842 | | -0.22639479 -0.92755279 0.29730658 179.03404178 |
| 39843 | | 0.91397412 -0.09677201 0.39406405 210.29209083 |
| 39844 | | Axis -0.55607345 -0.06251924 -0.82877841 |
| 39845 | | Axis point 47.68635638 77.63917676 0.00000000 |
| 39846 | | Rotation angle (degrees) 159.24697513 |
| 39847 | | Shift along axis -297.26026167 |
| 39848 | | |
| 39849 | | |
| 39850 | | > fitmap #35 inMap #34 |
| 39851 | | |
| 39852 | | Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#35) to map |
| 39853 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1306 atoms |
| 39854 | | average map value = 0.008638, steps = 40 |
| 39855 | | shifted from previous position = 0.00259 |
| 39856 | | rotated from previous position = 0.0467 degrees |
| 39857 | | atoms outside contour = 565, contour level = 0.0064458 |
| 39858 | | |
| 39859 | | Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#35) relative |
| 39860 | | to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 39861 | | Matrix rotation and translation |
| 39862 | | -0.33600451 0.36092061 0.86996395 201.02317412 |
| 39863 | | -0.22656995 -0.92751557 0.29728928 179.03525249 |
| 39864 | | 0.91420294 -0.09721716 0.39342318 210.25979761 |
| 39865 | | Axis -0.55639525 -0.06239281 -0.82857194 |
| 39866 | | Axis point 47.65908017 77.66051880 0.00000000 |
| 39867 | | Rotation angle (degrees) 159.23597395 |
| 39868 | | Shift along axis -297.23422034 |
| 39869 | | |
| 39870 | | |
| 39871 | | > select subtract #36 |
| 39872 | | |
| 39873 | | Nothing selected |
| 39874 | | |
| 39875 | | > show #25.10 models |
| 39876 | | |
| 39877 | | > hide #25.10 models |
| 39878 | | |
| 39879 | | > show #25.10 models |
| 39880 | | |
| 39881 | | > hide #25.10 models |
| 39882 | | |
| 39883 | | > select add #26.1 |
| 39884 | | |
| 39885 | | 1306 atoms, 1331 bonds, 3 pseudobonds, 161 residues, 2 models selected |
| 39886 | | |
| 39887 | | > select subtract #26.1 |
| 39888 | | |
| 39889 | | Nothing selected |
| 39890 | | |
| 39891 | | > show #25.10 models |
| 39892 | | |
| 39893 | | > hide #25.10 models |
| 39894 | | |
| 39895 | | > close #25.10 |
| 39896 | | |
| 39897 | | > hide #25.9 models |
| 39898 | | |
| 39899 | | > show #25.9 models |
| 39900 | | |
| 39901 | | > combine #26.1 |
| 39902 | | |
| 39903 | | > select add #37 |
| 39904 | | |
| 39905 | | 1306 atoms, 1331 bonds, 3 pseudobonds, 161 residues, 2 models selected |
| 39906 | | |
| 39907 | | > select subtract #37 |
| 39908 | | |
| 39909 | | Nothing selected |
| 39910 | | |
| 39911 | | > select add #37 |
| 39912 | | |
| 39913 | | 1306 atoms, 1331 bonds, 3 pseudobonds, 161 residues, 2 models selected |
| 39914 | | |
| 39915 | | > select subtract #37 |
| 39916 | | |
| 39917 | | Nothing selected |
| 39918 | | |
| 39919 | | > hide #25.9 models |
| 39920 | | |
| 39921 | | > show #25.9 models |
| 39922 | | |
| 39923 | | > matchmaker #!37 to #25.9 |
| 39924 | | |
| 39925 | | Parameters |
| 39926 | | --- |
| 39927 | | Chain pairing | bb |
| 39928 | | Alignment algorithm | Needleman-Wunsch |
| 39929 | | Similarity matrix | BLOSUM-62 |
| 39930 | | SS fraction | 0.3 |
| 39931 | | Gap open (HH/SS/other) | 18/18/6 |
| 39932 | | Gap extend | 1 |
| 39933 | | SS matrix | | | H | S | O |
| 39934 | | ---|---|---|--- |
| 39935 | | H | 6 | -9 | -6 |
| 39936 | | S | | 6 | -6 |
| 39937 | | O | | | 4 |
| 39938 | | Iteration cutoff | 2 |
| 39939 | | |
| 39940 | | Matchmaker 5nzr_COPI_coat_leaf_2017.cif M, chain M (#25.9) with copy of |
| 39941 | | 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A, chain A (#37), sequence alignment |
| 39942 | | score = 762.6 |
| 39943 | | RMSD between 94 pruned atom pairs is 1.262 angstroms; (across all 159 pairs: |
| 39944 | | 2.576) |
| 39945 | | |
| 39946 | | |
| 39947 | | > hide #!34 models |
| 39948 | | |
| 39949 | | > fitmap #37 inMap #34 |
| 39950 | | |
| 39951 | | Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#37) to map |
| 39952 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1306 atoms |
| 39953 | | average map value = 0.01088, steps = 104 |
| 39954 | | shifted from previous position = 0.407 |
| 39955 | | rotated from previous position = 3.96 degrees |
| 39956 | | atoms outside contour = 405, contour level = 0.0064458 |
| 39957 | | |
| 39958 | | Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#37) relative |
| 39959 | | to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 39960 | | Matrix rotation and translation |
| 39961 | | -0.54129972 -0.76666173 0.34528887 243.97507197 |
| 39962 | | -0.38367034 -0.14020143 -0.91276537 216.04770294 |
| 39963 | | 0.74819227 -0.62655674 -0.21825437 215.75309840 |
| 39964 | | Axis 0.45775576 -0.64439480 0.61254796 |
| 39965 | | Axis point 179.85601116 0.00000000 234.95515780 |
| 39966 | | Rotation angle (degrees) 161.78271137 |
| 39967 | | Shift along axis 104.62009737 |
| 39968 | | |
| 39969 | | |
| 39970 | | > close #25.9 |
| 39971 | | |
| 39972 | | > show #!34 models |
| 39973 | | |
| 39974 | | > fitmap #37 inMap #34 |
| 39975 | | |
| 39976 | | Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#37) to map |
| 39977 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1306 atoms |
| 39978 | | average map value = 0.01088, steps = 76 |
| 39979 | | shifted from previous position = 0.00432 |
| 39980 | | rotated from previous position = 0.0603 degrees |
| 39981 | | atoms outside contour = 406, contour level = 0.0064458 |
| 39982 | | |
| 39983 | | Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#37) relative |
| 39984 | | to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 39985 | | Matrix rotation and translation |
| 39986 | | -0.54069520 -0.76683005 0.34586176 243.96988302 |
| 39987 | | -0.38360219 -0.14115007 -0.91264780 215.99229085 |
| 39988 | | 0.74866418 -0.62613762 -0.21783853 215.78179850 |
| 39989 | | Axis 0.45807841 -0.64400884 0.61271264 |
| 39990 | | Axis point 179.93311836 0.00000000 235.03686061 |
| 39991 | | Rotation angle (degrees) 161.77613953 |
| 39992 | | Shift along axis 104.86862749 |
| 39993 | | |
| 39994 | | |
| 39995 | | > fitmap #37 inMap #34 |
| 39996 | | |
| 39997 | | Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#37) to map |
| 39998 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1306 atoms |
| 39999 | | average map value = 0.01088, steps = 64 |
| 40000 | | shifted from previous position = 0.00818 |
| 40001 | | rotated from previous position = 0.0216 degrees |
| 40002 | | atoms outside contour = 406, contour level = 0.0064458 |
| 40003 | | |
| 40004 | | Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#37) relative |
| 40005 | | to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 40006 | | Matrix rotation and translation |
| 40007 | | -0.54084402 -0.76667433 0.34597429 243.97678854 |
| 40008 | | -0.38342242 -0.14138288 -0.91268731 215.97017405 |
| 40009 | | 0.74864877 -0.62627577 -0.21749404 215.77421533 |
| 40010 | | Axis 0.45800331 -0.64392046 0.61286165 |
| 40011 | | Axis point 179.93402353 0.00000000 235.05958743 |
| 40012 | | Rotation angle (degrees) 161.77954268 |
| 40013 | | Shift along axis 104.91430511 |
| 40014 | | |
| 40015 | | |
| 40016 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 40017 | | > dataset/Chimera sessions/20240406_leaf_fitting_v19.cxs" |
| 40018 | | |
| 40019 | | > hide #!26.1 models |
| 40020 | | |
| 40021 | | > show #!26.1 models |
| 40022 | | |
| 40023 | | > hide #!26.2 models |
| 40024 | | |
| 40025 | | > show #!26.2 models |
| 40026 | | |
| 40027 | | > hide #26.3 models |
| 40028 | | |
| 40029 | | > show #26.3 models |
| 40030 | | |
| 40031 | | > hide #27.1 models |
| 40032 | | |
| 40033 | | > show #27.1 models |
| 40034 | | |
| 40035 | | > hide #27.1 models |
| 40036 | | |
| 40037 | | > show #27.1 models |
| 40038 | | |
| 40039 | | > hide #27.2 models |
| 40040 | | |
| 40041 | | > show #27.2 models |
| 40042 | | |
| 40043 | | > hide #28.2 models |
| 40044 | | |
| 40045 | | > show #28.2 models |
| 40046 | | |
| 40047 | | > hide #28.2 models |
| 40048 | | |
| 40049 | | > show #28.2 models |
| 40050 | | |
| 40051 | | > hide #28.2 models |
| 40052 | | |
| 40053 | | > show #28.2 models |
| 40054 | | |
| 40055 | | > hide #28.2 models |
| 40056 | | |
| 40057 | | > show #28.2 models |
| 40058 | | |
| 40059 | | > hide #28.2 models |
| 40060 | | |
| 40061 | | > show #28.1 models |
| 40062 | | |
| 40063 | | > hide #28.1 models |
| 40064 | | |
| 40065 | | > close #28 |
| 40066 | | |
| 40067 | | > show #29 models |
| 40068 | | |
| 40069 | | > hide #29 models |
| 40070 | | |
| 40071 | | > show #29 models |
| 40072 | | |
| 40073 | | > hide #29 models |
| 40074 | | |
| 40075 | | > show #29 models |
| 40076 | | |
| 40077 | | > hide #29 models |
| 40078 | | |
| 40079 | | > close #29 |
| 40080 | | |
| 40081 | | > show #!30 models |
| 40082 | | |
| 40083 | | > fitmap #30 inMap #34 |
| 40084 | | |
| 40085 | | Fit molecule 4j87_yeast_alphaCOPI.cif (#30) to map |
| 40086 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2737 atoms |
| 40087 | | average map value = 0.009304, steps = 36 |
| 40088 | | shifted from previous position = 0.0233 |
| 40089 | | rotated from previous position = 0.0317 degrees |
| 40090 | | atoms outside contour = 1051, contour level = 0.0064458 |
| 40091 | | |
| 40092 | | Position of 4j87_yeast_alphaCOPI.cif (#30) relative to |
| 40093 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 40094 | | Matrix rotation and translation |
| 40095 | | 0.79056596 -0.52023232 0.32305389 236.67743801 |
| 40096 | | -0.42069457 -0.07803799 0.90383968 306.89868613 |
| 40097 | | -0.44499613 -0.85045189 -0.28055309 224.02068804 |
| 40098 | | Axis -0.91481745 0.40051812 0.05190635 |
| 40099 | | Axis point 0.00000000 298.42661967 -19.93047147 |
| 40100 | | Rotation angle (degrees) 106.49983377 |
| 40101 | | Shift along axis -81.97007056 |
| 40102 | | |
| 40103 | | |
| 40104 | | > fitmap #30 inMap #34 |
| 40105 | | |
| 40106 | | Fit molecule 4j87_yeast_alphaCOPI.cif (#30) to map |
| 40107 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2737 atoms |
| 40108 | | average map value = 0.009304, steps = 44 |
| 40109 | | shifted from previous position = 0.0315 |
| 40110 | | rotated from previous position = 0.0652 degrees |
| 40111 | | atoms outside contour = 1049, contour level = 0.0064458 |
| 40112 | | |
| 40113 | | Position of 4j87_yeast_alphaCOPI.cif (#30) relative to |
| 40114 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 40115 | | Matrix rotation and translation |
| 40116 | | 0.79098567 -0.51952120 0.32317084 236.68463732 |
| 40117 | | -0.42093865 -0.07876264 0.90366316 306.91752169 |
| 40118 | | -0.44401838 -0.85081971 -0.28098667 224.04980128 |
| 40119 | | Axis -0.91502166 0.40011491 0.05141411 |
| 40120 | | Axis point 0.00000000 298.31698751 -19.93413458 |
| 40121 | | Rotation angle (degrees) 106.52190026 |
| 40122 | | Shift along axis -82.24997222 |
| 40123 | | |
| 40124 | | |
| 40125 | | > fitmap #30 inMap #34 |
| 40126 | | |
| 40127 | | Fit molecule 4j87_yeast_alphaCOPI.cif (#30) to map |
| 40128 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2737 atoms |
| 40129 | | average map value = 0.009304, steps = 28 |
| 40130 | | shifted from previous position = 0.0253 |
| 40131 | | rotated from previous position = 0.0264 degrees |
| 40132 | | atoms outside contour = 1051, contour level = 0.0064458 |
| 40133 | | |
| 40134 | | Position of 4j87_yeast_alphaCOPI.cif (#30) relative to |
| 40135 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 40136 | | Matrix rotation and translation |
| 40137 | | 0.79085843 -0.51970045 0.32319405 236.68274699 |
| 40138 | | -0.42082895 -0.07837223 0.90374820 306.90197055 |
| 40139 | | -0.44434891 -0.85074628 -0.28068633 224.03169942 |
| 40140 | | Axis -0.91494800 0.40026452 0.05156031 |
| 40141 | | Axis point 0.00000000 298.36397081 -19.96131267 |
| 40142 | | Rotation angle (degrees) 106.50506268 |
| 40143 | | Shift along axis -82.15929109 |
| 40144 | | |
| 40145 | | |
| 40146 | | > fitmap #30 inMap #34 |
| 40147 | | |
| 40148 | | Fit molecule 4j87_yeast_alphaCOPI.cif (#30) to map |
| 40149 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2737 atoms |
| 40150 | | average map value = 0.009303, steps = 28 |
| 40151 | | shifted from previous position = 0.0324 |
| 40152 | | rotated from previous position = 0.0159 degrees |
| 40153 | | atoms outside contour = 1049, contour level = 0.0064458 |
| 40154 | | |
| 40155 | | Position of 4j87_yeast_alphaCOPI.cif (#30) relative to |
| 40156 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 40157 | | Matrix rotation and translation |
| 40158 | | 0.79092275 -0.51963452 0.32314267 236.68568073 |
| 40159 | | -0.42088094 -0.07863185 0.90370143 306.92165118 |
| 40160 | | -0.44418515 -0.85076260 -0.28089599 224.05512317 |
| 40161 | | Axis -0.91498940 0.40017738 0.05150204 |
| 40162 | | Axis point 0.00000000 298.34462200 -19.93270870 |
| 40163 | | Rotation angle (degrees) 106.51716289 |
| 40164 | | Shift along axis -82.20249073 |
| 40165 | | |
| 40166 | | |
| 40167 | | > hide #25.8 models |
| 40168 | | |
| 40169 | | > show #25.8 models |
| 40170 | | |
| 40171 | | > combine #26.3 |
| 40172 | | |
| 40173 | | > hide #25.8 models |
| 40174 | | |
| 40175 | | > show #25.8 models |
| 40176 | | |
| 40177 | | > hide #26.3 models |
| 40178 | | |
| 40179 | | > show #26.3 models |
| 40180 | | |
| 40181 | | > hide #26.3 models |
| 40182 | | |
| 40183 | | > show #26.3 models |
| 40184 | | |
| 40185 | | > hide #26.3 models |
| 40186 | | |
| 40187 | | > show #26.3 models |
| 40188 | | |
| 40189 | | > hide #28 models |
| 40190 | | |
| 40191 | | > show #28 models |
| 40192 | | |
| 40193 | | > hide #28 models |
| 40194 | | |
| 40195 | | > show #28 models |
| 40196 | | |
| 40197 | | > hide #25.8 models |
| 40198 | | |
| 40199 | | > show #25.8 models |
| 40200 | | |
| 40201 | | > hide #26.3 models |
| 40202 | | |
| 40203 | | > hide #28 models |
| 40204 | | |
| 40205 | | > show #28 models |
| 40206 | | |
| 40207 | | > show #26.3 models |
| 40208 | | |
| 40209 | | > matchmaker #28 to #25.8 |
| 40210 | | |
| 40211 | | Parameters |
| 40212 | | --- |
| 40213 | | Chain pairing | bb |
| 40214 | | Alignment algorithm | Needleman-Wunsch |
| 40215 | | Similarity matrix | BLOSUM-62 |
| 40216 | | SS fraction | 0.3 |
| 40217 | | Gap open (HH/SS/other) | 18/18/6 |
| 40218 | | Gap extend | 1 |
| 40219 | | SS matrix | | | H | S | O |
| 40220 | | ---|---|---|--- |
| 40221 | | H | 6 | -9 | -6 |
| 40222 | | S | | 6 | -6 |
| 40223 | | O | | | 4 |
| 40224 | | Iteration cutoff | 2 |
| 40225 | | |
| 40226 | | Matchmaker 5nzr_COPI_coat_leaf_2017.cif L, chain L (#25.8) with copy of |
| 40227 | | 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C, chain C (#28), sequence alignment |
| 40228 | | score = 662.5 |
| 40229 | | RMSD between 94 pruned atom pairs is 1.180 angstroms; (across all 137 pairs: |
| 40230 | | 1.871) |
| 40231 | | |
| 40232 | | |
| 40233 | | > hide #!34 models |
| 40234 | | |
| 40235 | | > hide #25.8 models |
| 40236 | | |
| 40237 | | > show #25.8 models |
| 40238 | | |
| 40239 | | > hide #25.8 models |
| 40240 | | |
| 40241 | | > show #25.8 models |
| 40242 | | |
| 40243 | | > hide #28 models |
| 40244 | | |
| 40245 | | > show #28 models |
| 40246 | | |
| 40247 | | > show #!34 models |
| 40248 | | |
| 40249 | | > fitmap #28 inMap #34 |
| 40250 | | |
| 40251 | | Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#28) to map |
| 40252 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1128 atoms |
| 40253 | | average map value = 0.007772, steps = 84 |
| 40254 | | shifted from previous position = 1.17 |
| 40255 | | rotated from previous position = 4.01 degrees |
| 40256 | | atoms outside contour = 477, contour level = 0.0064458 |
| 40257 | | |
| 40258 | | Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#28) relative |
| 40259 | | to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 40260 | | Matrix rotation and translation |
| 40261 | | -0.56993929 -0.71661199 0.40204035 245.68162516 |
| 40262 | | -0.48485532 -0.10172533 -0.86865831 216.17526219 |
| 40263 | | 0.66338866 -0.69001391 -0.28947588 214.81018147 |
| 40264 | | Axis 0.45533467 -0.66613308 0.59070895 |
| 40265 | | Axis point 184.91540655 0.00000000 218.31168221 |
| 40266 | | Rotation angle (degrees) 168.68702299 |
| 40267 | | Shift along axis 94.75616540 |
| 40268 | | |
| 40269 | | |
| 40270 | | > close #25.8 |
| 40271 | | |
| 40272 | | > show #!25.6 models |
| 40273 | | |
| 40274 | | > hide #!25.6 models |
| 40275 | | |
| 40276 | | > show #!25.6 models |
| 40277 | | |
| 40278 | | > hide #!25.6 models |
| 40279 | | |
| 40280 | | > show #!25.6 models |
| 40281 | | |
| 40282 | | > hide #!25.6 models |
| 40283 | | |
| 40284 | | > hide #!25.7 models |
| 40285 | | |
| 40286 | | > show #!25.7 models |
| 40287 | | |
| 40288 | | > combine #26.2 |
| 40289 | | |
| 40290 | | > hide #!25.7 models |
| 40291 | | |
| 40292 | | > show #!25.7 models |
| 40293 | | |
| 40294 | | > fitmap #25.7 inMap #34 |
| 40295 | | |
| 40296 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif K (#25.7) to map |
| 40297 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2239 atoms |
| 40298 | | average map value = 0.01256, steps = 44 |
| 40299 | | shifted from previous position = 0.0318 |
| 40300 | | rotated from previous position = 0.0204 degrees |
| 40301 | | atoms outside contour = 991, contour level = 0.0064458 |
| 40302 | | |
| 40303 | | Position of 5nzr_COPI_coat_leaf_2017.cif K (#25.7) relative to |
| 40304 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 40305 | | Matrix rotation and translation |
| 40306 | | -0.55373559 0.83221893 -0.02808100 218.96063769 |
| 40307 | | -0.83268549 -0.55327700 0.02279102 405.79166712 |
| 40308 | | 0.00343055 0.03600284 0.99934579 143.66486297 |
| 40309 | | Axis 0.00793381 -0.01892296 -0.99978947 |
| 40310 | | Axis point 218.03723218 142.54045039 0.00000000 |
| 40311 | | Rotation angle (degrees) 123.63039976 |
| 40312 | | Shift along axis -149.57620218 |
| 40313 | | |
| 40314 | | |
| 40315 | | > matchmaker #!29 to #25.7 |
| 40316 | | |
| 40317 | | Parameters |
| 40318 | | --- |
| 40319 | | Chain pairing | bb |
| 40320 | | Alignment algorithm | Needleman-Wunsch |
| 40321 | | Similarity matrix | BLOSUM-62 |
| 40322 | | SS fraction | 0.3 |
| 40323 | | Gap open (HH/SS/other) | 18/18/6 |
| 40324 | | Gap extend | 1 |
| 40325 | | SS matrix | | | H | S | O |
| 40326 | | ---|---|---|--- |
| 40327 | | H | 6 | -9 | -6 |
| 40328 | | S | | 6 | -6 |
| 40329 | | O | | | 4 |
| 40330 | | Iteration cutoff | 2 |
| 40331 | | |
| 40332 | | Matchmaker 5nzr_COPI_coat_leaf_2017.cif K, chain K (#25.7) with copy of |
| 40333 | | 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B, chain B (#29), sequence alignment |
| 40334 | | score = 1196.5 |
| 40335 | | RMSD between 133 pruned atom pairs is 1.377 angstroms; (across all 263 pairs: |
| 40336 | | 3.376) |
| 40337 | | |
| 40338 | | |
| 40339 | | > hide #!25.7 models |
| 40340 | | |
| 40341 | | > hide #!26.1 models |
| 40342 | | |
| 40343 | | > show #!26.1 models |
| 40344 | | |
| 40345 | | > hide #!35 models |
| 40346 | | |
| 40347 | | > show #!35 models |
| 40348 | | |
| 40349 | | > hide #!36 models |
| 40350 | | |
| 40351 | | > show #!36 models |
| 40352 | | |
| 40353 | | > hide #!37 models |
| 40354 | | |
| 40355 | | > show #!37 models |
| 40356 | | |
| 40357 | | > fitmap #37 inMap #34 |
| 40358 | | |
| 40359 | | Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#37) to map |
| 40360 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1306 atoms |
| 40361 | | average map value = 0.01088, steps = 48 |
| 40362 | | shifted from previous position = 0.0334 |
| 40363 | | rotated from previous position = 0.085 degrees |
| 40364 | | atoms outside contour = 406, contour level = 0.0064458 |
| 40365 | | |
| 40366 | | Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#37) relative |
| 40367 | | to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 40368 | | Matrix rotation and translation |
| 40369 | | -0.54161844 -0.76643163 0.34529989 243.99385836 |
| 40370 | | -0.38372770 -0.14005578 -0.91276362 216.08584599 |
| 40371 | | 0.74793216 -0.62687074 -0.21824425 215.72724414 |
| 40372 | | Axis 0.45761328 -0.64447172 0.61257350 |
| 40373 | | Axis point 179.86152210 0.00000000 234.93773919 |
| 40374 | | Rotation angle (degrees) 161.79764955 |
| 40375 | | Shift along axis 104.54240724 |
| 40376 | | |
| 40377 | | |
| 40378 | | > fitmap #29 inMap #34 |
| 40379 | | |
| 40380 | | Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#29) to map |
| 40381 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2069 atoms |
| 40382 | | average map value = 0.01228, steps = 56 |
| 40383 | | shifted from previous position = 0.538 |
| 40384 | | rotated from previous position = 0.789 degrees |
| 40385 | | atoms outside contour = 767, contour level = 0.0064458 |
| 40386 | | |
| 40387 | | Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#29) relative |
| 40388 | | to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 40389 | | Matrix rotation and translation |
| 40390 | | -0.55899489 -0.72614953 0.40028935 245.14925444 |
| 40391 | | -0.44644233 -0.14323016 -0.88327479 214.34605641 |
| 40392 | | 0.69872309 -0.67245221 -0.24411896 213.92962783 |
| 40393 | | Axis 0.45815304 -0.64854686 0.60785094 |
| 40394 | | Axis point 184.70030066 0.00000000 225.19456914 |
| 40395 | | Rotation angle (degrees) 166.69829003 |
| 40396 | | Shift along axis 103.33974015 |
| 40397 | | |
| 40398 | | |
| 40399 | | > fitmap #29 inMap #34 |
| 40400 | | |
| 40401 | | Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#29) to map |
| 40402 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2069 atoms |
| 40403 | | average map value = 0.01228, steps = 28 |
| 40404 | | shifted from previous position = 0.0473 |
| 40405 | | rotated from previous position = 0.0856 degrees |
| 40406 | | atoms outside contour = 765, contour level = 0.0064458 |
| 40407 | | |
| 40408 | | Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#29) relative |
| 40409 | | to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 40410 | | Matrix rotation and translation |
| 40411 | | -0.55790495 -0.72657367 0.40103958 245.11920271 |
| 40412 | | -0.44743418 -0.14365178 -0.88270426 214.35988941 |
| 40413 | | 0.69895973 -0.67190390 -0.24494986 213.97654545 |
| 40414 | | Axis 0.45879093 -0.64840052 0.60752585 |
| 40415 | | Axis point 184.83003870 0.00000000 225.15640457 |
| 40416 | | Rotation angle (degrees) 166.71854943 |
| 40417 | | Shift along axis 103.46368548 |
| 40418 | | |
| 40419 | | |
| 40420 | | > fitmap #29 inMap #34 |
| 40421 | | |
| 40422 | | Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#29) to map |
| 40423 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2069 atoms |
| 40424 | | average map value = 0.01228, steps = 40 |
| 40425 | | shifted from previous position = 0.0493 |
| 40426 | | rotated from previous position = 0.11 degrees |
| 40427 | | atoms outside contour = 764, contour level = 0.0064458 |
| 40428 | | |
| 40429 | | Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#29) relative |
| 40430 | | to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 40431 | | Matrix rotation and translation |
| 40432 | | -0.55914928 -0.72625234 0.39988700 245.15446634 |
| 40433 | | -0.44598243 -0.14311765 -0.88352532 214.35117032 |
| 40434 | | 0.69889322 -0.67236513 -0.24387165 213.93318919 |
| 40435 | | Axis 0.45802274 -0.64856757 0.60792703 |
| 40436 | | Axis point 184.65421906 0.00000000 225.24447541 |
| 40437 | | Rotation angle (degrees) 166.67273670 |
| 40438 | | Shift along axis 103.32087343 |
| 40439 | | |
| 40440 | | |
| 40441 | | > fitmap #29 inMap #34 |
| 40442 | | |
| 40443 | | Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#29) to map |
| 40444 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2069 atoms |
| 40445 | | average map value = 0.01228, steps = 28 |
| 40446 | | shifted from previous position = 0.023 |
| 40447 | | rotated from previous position = 0.0516 degrees |
| 40448 | | atoms outside contour = 765, contour level = 0.0064458 |
| 40449 | | |
| 40450 | | Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#29) relative |
| 40451 | | to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 40452 | | Matrix rotation and translation |
| 40453 | | -0.55860599 -0.72638775 0.40040000 245.14033651 |
| 40454 | | -0.44669808 -0.14328398 -0.88313675 214.36057411 |
| 40455 | | 0.69887063 -0.67218340 -0.24443673 213.95623045 |
| 40456 | | Axis 0.45836431 -0.64852387 0.60771617 |
| 40457 | | Axis point 184.73389217 0.00000000 225.19547510 |
| 40458 | | Rotation angle (degrees) 166.69613556 |
| 40459 | | Shift along axis 103.37029320 |
| 40460 | | |
| 40461 | | |
| 40462 | | > fitmap #29 inMap #34 |
| 40463 | | |
| 40464 | | Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#29) to map |
| 40465 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2069 atoms |
| 40466 | | average map value = 0.01228, steps = 44 |
| 40467 | | shifted from previous position = 0.0115 |
| 40468 | | rotated from previous position = 0.0231 degrees |
| 40469 | | atoms outside contour = 767, contour level = 0.0064458 |
| 40470 | | |
| 40471 | | Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#29) relative |
| 40472 | | to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 40473 | | Matrix rotation and translation |
| 40474 | | -0.55878243 -0.72637637 0.40017440 245.14104522 |
| 40475 | | -0.44634487 -0.14327439 -0.88331687 214.35222183 |
| 40476 | | 0.69895525 -0.67219774 -0.24415516 213.94712879 |
| 40477 | | Axis 0.45824170 -0.64851463 0.60781849 |
| 40478 | | Axis point 184.69864831 0.00000000 225.22630823 |
| 40479 | | Rotation angle (degrees) 166.68186027 |
| 40480 | | Shift along axis 103.36431790 |
| 40481 | | |
| 40482 | | |
| 40483 | | > show #!25.7 models |
| 40484 | | |
| 40485 | | > hide #!25.7 models |
| 40486 | | |
| 40487 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 40488 | | > dataset/Chimera sessions/20240406_leaf_fitting_v20.cxs" |
| 40489 | | |
| 40490 | | > open "/Users/becca/Desktop/Postdoc/Structure files/COPI |
| 40491 | | > structures/1pzd_Cow_Cterm_COPI_gamma.cif" |
| 40492 | | |
| 40493 | | Summary of feedback from opening /Users/becca/Desktop/Postdoc/Structure |
| 40494 | | files/COPI structures/1pzd_Cow_Cterm_COPI_gamma.cif |
| 40495 | | --- |
| 40496 | | note | Fetching CCD SO4 from https://files.wwpdb.org/pub/pdb/refdata/chem_comp/4/SO4/SO4.cif |
| 40497 | | |
| 40498 | | 1pzd_Cow_Cterm_COPI_gamma.cif title: |
| 40499 | | Structural Identification of a conserved appendage domain in the carboxyl- |
| 40500 | | terminus of the COPI gamma-subunit. [more info...] |
| 40501 | | |
| 40502 | | Chain information for 1pzd_Cow_Cterm_COPI_gamma.cif #38 |
| 40503 | | --- |
| 40504 | | Chain | Description | UniProt |
| 40505 | | A | Coatomer gamma subunit | COPG_BOVIN 555-874 |
| 40506 | | |
| 40507 | | Non-standard residues in 1pzd_Cow_Cterm_COPI_gamma.cif #38 |
| 40508 | | --- |
| 40509 | | SO4 — sulfate ion |
| 40510 | | |
| 40511 | | |
| 40512 | | > hide #38 models |
| 40513 | | |
| 40514 | | > show #38 models |
| 40515 | | |
| 40516 | | > hide #38 models |
| 40517 | | |
| 40518 | | > show #38 models |
| 40519 | | |
| 40520 | | > hide #38 models |
| 40521 | | |
| 40522 | | > show #38 models |
| 40523 | | |
| 40524 | | > hide #38 models |
| 40525 | | |
| 40526 | | > show #38 models |
| 40527 | | |
| 40528 | | > hide #38 models |
| 40529 | | |
| 40530 | | > select add #38 |
| 40531 | | |
| 40532 | | 2270 atoms, 2156 bonds, 426 residues, 1 model selected |
| 40533 | | |
| 40534 | | > show #38 models |
| 40535 | | |
| 40536 | | > view matrix models #38,1,0,0,-0.64529,0,1,0,23.842,0,0,1,-23.879 |
| 40537 | | |
| 40538 | | > view matrix models #38,1,0,0,-1.0009,0,1,0,24.244,0,0,1,-24.177 |
| 40539 | | |
| 40540 | | > view matrix models #38,1,0,0,59.65,0,1,0,285.42,0,0,1,-153.36 |
| 40541 | | |
| 40542 | | > view matrix models #38,1,0,0,237.46,0,1,0,84.435,0,0,1,-77.65 |
| 40543 | | |
| 40544 | | > view matrix models #38,1,0,0,227.02,0,1,0,211.76,0,0,1,-69.899 |
| 40545 | | |
| 40546 | | > view matrix models #38,1,0,0,221.44,0,1,0,318.77,0,0,1,-11.511 |
| 40547 | | |
| 40548 | | > view matrix models #38,1,0,0,221.36,0,1,0,404.89,0,0,1,96.545 |
| 40549 | | |
| 40550 | | > view matrix models #38,1,0,0,318.93,0,1,0,520.04,0,0,1,349.49 |
| 40551 | | |
| 40552 | | > view matrix models #38,1,0,0,383.63,0,1,0,467.83,0,0,1,382.24 |
| 40553 | | |
| 40554 | | > color #38 #00f900ff |
| 40555 | | |
| 40556 | | > color #29 #00f900ff |
| 40557 | | |
| 40558 | | > color #25.7 #00f900ff |
| 40559 | | |
| 40560 | | > color #25.6 #00f900ff |
| 40561 | | |
| 40562 | | > color #9 #00f900ff |
| 40563 | | |
| 40564 | | > select subtract #38 |
| 40565 | | |
| 40566 | | Nothing selected |
| 40567 | | |
| 40568 | | > show #!25.6 models |
| 40569 | | |
| 40570 | | > hide #!25.6 models |
| 40571 | | |
| 40572 | | > show #!25.7 models |
| 40573 | | |
| 40574 | | > hide #!25.7 models |
| 40575 | | |
| 40576 | | > show #!25.7 models |
| 40577 | | |
| 40578 | | > matchmaker #38 to #25.7 |
| 40579 | | |
| 40580 | | Parameters |
| 40581 | | --- |
| 40582 | | Chain pairing | bb |
| 40583 | | Alignment algorithm | Needleman-Wunsch |
| 40584 | | Similarity matrix | BLOSUM-62 |
| 40585 | | SS fraction | 0.3 |
| 40586 | | Gap open (HH/SS/other) | 18/18/6 |
| 40587 | | Gap extend | 1 |
| 40588 | | SS matrix | | | H | S | O |
| 40589 | | ---|---|---|--- |
| 40590 | | H | 6 | -9 | -6 |
| 40591 | | S | | 6 | -6 |
| 40592 | | O | | | 4 |
| 40593 | | Iteration cutoff | 2 |
| 40594 | | |
| 40595 | | Matchmaker 5nzr_COPI_coat_leaf_2017.cif K, chain K (#25.7) with |
| 40596 | | 1pzd_Cow_Cterm_COPI_gamma.cif, chain A (#38), sequence alignment score = |
| 40597 | | 1222.3 |
| 40598 | | RMSD between 131 pruned atom pairs is 1.315 angstroms; (across all 271 pairs: |
| 40599 | | 5.906) |
| 40600 | | |
| 40601 | | |
| 40602 | | > hide #38 models |
| 40603 | | |
| 40604 | | > show #38 models |
| 40605 | | |
| 40606 | | > fitmap #38 inMap #34 |
| 40607 | | |
| 40608 | | Fit molecule 1pzd_Cow_Cterm_COPI_gamma.cif (#38) to map |
| 40609 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2270 atoms |
| 40610 | | average map value = 0.005007, steps = 76 |
| 40611 | | shifted from previous position = 3.75 |
| 40612 | | rotated from previous position = 7.51 degrees |
| 40613 | | atoms outside contour = 1871, contour level = 0.0064458 |
| 40614 | | |
| 40615 | | Position of 1pzd_Cow_Cterm_COPI_gamma.cif (#38) relative to |
| 40616 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 40617 | | Matrix rotation and translation |
| 40618 | | -0.75820373 -0.32963444 0.56255510 246.48716545 |
| 40619 | | 0.63653394 -0.18730372 0.74815898 188.08479567 |
| 40620 | | -0.14125030 0.92534234 0.35183789 314.52014998 |
| 40621 | | Axis 0.14662708 0.58243015 0.79954713 |
| 40622 | | Axis point 103.49526445 19.07189728 0.00000000 |
| 40623 | | Rotation angle (degrees) 142.82890022 |
| 40624 | | Shift along axis 397.16163406 |
| 40625 | | |
| 40626 | | |
| 40627 | | > fitmap #38 inMap #34 |
| 40628 | | |
| 40629 | | Fit molecule 1pzd_Cow_Cterm_COPI_gamma.cif (#38) to map |
| 40630 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2270 atoms |
| 40631 | | average map value = 0.005007, steps = 76 |
| 40632 | | shifted from previous position = 3.75 |
| 40633 | | rotated from previous position = 7.51 degrees |
| 40634 | | atoms outside contour = 1871, contour level = 0.0064458 |
| 40635 | | |
| 40636 | | Position of 1pzd_Cow_Cterm_COPI_gamma.cif (#38) relative to |
| 40637 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 40638 | | Matrix rotation and translation |
| 40639 | | -0.75820373 -0.32963444 0.56255510 246.48716545 |
| 40640 | | 0.63653394 -0.18730372 0.74815898 188.08479567 |
| 40641 | | -0.14125030 0.92534234 0.35183789 314.52014998 |
| 40642 | | Axis 0.14662708 0.58243015 0.79954713 |
| 40643 | | Axis point 103.49526445 19.07189728 0.00000000 |
| 40644 | | Rotation angle (degrees) 142.82890022 |
| 40645 | | Shift along axis 397.16163406 |
| 40646 | | |
| 40647 | | |
| 40648 | | > hide #!25.7 models |
| 40649 | | |
| 40650 | | > show #!25.7 models |
| 40651 | | |
| 40652 | | > hide #!34 models |
| 40653 | | |
| 40654 | | > hide #38 models |
| 40655 | | |
| 40656 | | > show #38 models |
| 40657 | | |
| 40658 | | > hide #38 models |
| 40659 | | |
| 40660 | | > show #38 models |
| 40661 | | |
| 40662 | | > hide #!29 models |
| 40663 | | |
| 40664 | | > show #!29 models |
| 40665 | | |
| 40666 | | > hide #38 models |
| 40667 | | |
| 40668 | | > show #38 models |
| 40669 | | |
| 40670 | | > hide #38 models |
| 40671 | | |
| 40672 | | > hide #!29 models |
| 40673 | | |
| 40674 | | > hide #!25.7 models |
| 40675 | | |
| 40676 | | > show #38 models |
| 40677 | | |
| 40678 | | > show #!29 models |
| 40679 | | |
| 40680 | | > show #!25.7 models |
| 40681 | | |
| 40682 | | > hide #!25.7 models |
| 40683 | | |
| 40684 | | > close #25.7 |
| 40685 | | |
| 40686 | | > hide #38 models |
| 40687 | | |
| 40688 | | > show #38 models |
| 40689 | | |
| 40690 | | > show #!34 models |
| 40691 | | |
| 40692 | | > show #!25.6 models |
| 40693 | | |
| 40694 | | > hide #!25.6 models |
| 40695 | | |
| 40696 | | > show #!25.6 models |
| 40697 | | |
| 40698 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 40699 | | > dataset/Chimera sessions/20240406_leaf_fitting_v21.cxs" |
| 40700 | | |
| 40701 | | ——— End of log from Mon Apr 15 15:35:58 2024 ——— |
| 40702 | | |
| 40703 | | opened ChimeraX session |
| 40704 | | |
| 40705 | | > hide #27.1 models |
| 40706 | | |
| 40707 | | > show #27.1 models |
| 40708 | | |
| 40709 | | > hide #!34 models |
| 40710 | | |
| 40711 | | > hide #27.2 models |
| 40712 | | |
| 40713 | | > color #26.2 #00f900ff |
| 40714 | | |
| 40715 | | > hide #!30 models |
| 40716 | | |
| 40717 | | > hide #!25.2 models |
| 40718 | | |
| 40719 | | > hide #!25.6 models |
| 40720 | | |
| 40721 | | > hide #!25.4 models |
| 40722 | | |
| 40723 | | > ui mousemode right select |
| 40724 | | |
| 40725 | | Drag select of 213 residues |
| 40726 | | |
| 40727 | | > show #!34 models |
| 40728 | | |
| 40729 | | > fitmap selection inMap #34 moveWholeMolecules false |
| 40730 | | |
| 40731 | | Missing or invalid "atomsOrMap" argument: invalid objects specifier |
| 40732 | | |
| 40733 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 40734 | | |
| 40735 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 40736 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms |
| 40737 | | average map value = 0.01022, steps = 116 |
| 40738 | | shifted from previous position = 4.1 |
| 40739 | | rotated from previous position = 12.8 degrees |
| 40740 | | atoms outside contour = 712, contour level = 0.0064458 |
| 40741 | | |
| 40742 | | |
| 40743 | | > hide #!34 models |
| 40744 | | |
| 40745 | | > select add #27.1 |
| 40746 | | |
| 40747 | | 6538 atoms, 6591 bonds, 911 residues, 1 model selected |
| 40748 | | |
| 40749 | | > ui tool show "Fit in Map" |
| 40750 | | |
| 40751 | | > show #!34 models |
| 40752 | | |
| 40753 | | > fitmap #27.1 inMap #34 |
| 40754 | | |
| 40755 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 40756 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms |
| 40757 | | average map value = 0.009087, steps = 64 |
| 40758 | | shifted from previous position = 0.359 |
| 40759 | | rotated from previous position = 0.614 degrees |
| 40760 | | atoms outside contour = 2707, contour level = 0.0064458 |
| 40761 | | |
| 40762 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to |
| 40763 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 40764 | | Matrix rotation and translation |
| 40765 | | 0.99755824 -0.01645506 0.06787330 -74.41438134 |
| 40766 | | 0.01499908 0.99964752 0.02190559 -76.65180827 |
| 40767 | | -0.06820983 -0.02083407 0.99745344 -69.25669387 |
| 40768 | | Axis -0.29260936 0.93166855 0.21534503 |
| 40769 | | Axis point -861.70990518 -0.00000000 1343.67041359 |
| 40770 | | Rotation angle (degrees) 4.18815100 |
| 40771 | | Shift along axis -64.55381917 |
| 40772 | | |
| 40773 | | |
| 40774 | | > fitmap #27.1 inMap #34 |
| 40775 | | |
| 40776 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 40777 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms |
| 40778 | | average map value = 0.009087, steps = 28 |
| 40779 | | shifted from previous position = 0.04 |
| 40780 | | rotated from previous position = 0.0543 degrees |
| 40781 | | atoms outside contour = 2708, contour level = 0.0064458 |
| 40782 | | |
| 40783 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to |
| 40784 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 40785 | | Matrix rotation and translation |
| 40786 | | 0.99753347 -0.01580353 0.06839024 -74.55393363 |
| 40787 | | 0.01436959 0.99966754 0.02140857 -76.52569111 |
| 40788 | | -0.06870583 -0.02037302 0.99742892 -69.29634346 |
| 40789 | | Axis -0.28527036 0.93604487 0.20601171 |
| 40790 | | Axis point -864.49362817 0.00000000 1328.57141631 |
| 40791 | | Rotation angle (degrees) 4.19961917 |
| 40792 | | Shift along axis -64.63931133 |
| 40793 | | |
| 40794 | | |
| 40795 | | > fitmap #27.1 inMap #34 |
| 40796 | | |
| 40797 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 40798 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms |
| 40799 | | average map value = 0.009088, steps = 40 |
| 40800 | | shifted from previous position = 0.0404 |
| 40801 | | rotated from previous position = 0.0851 degrees |
| 40802 | | atoms outside contour = 2701, contour level = 0.0064458 |
| 40803 | | |
| 40804 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to |
| 40805 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 40806 | | Matrix rotation and translation |
| 40807 | | 0.99744788 -0.01560279 0.06967261 -74.80797081 |
| 40808 | | 0.01409304 0.99965624 0.02210842 -76.65657376 |
| 40809 | | -0.06999362 -0.02107009 0.99732489 -69.17622712 |
| 40810 | | Axis -0.28945064 0.93626391 0.19906840 |
| 40811 | | Axis point -856.59871046 0.00000000 1307.75000325 |
| 40812 | | Rotation angle (degrees) 4.27749259 |
| 40813 | | Shift along axis -63.88836937 |
| 40814 | | |
| 40815 | | |
| 40816 | | > fitmap #27.1 inMap #34 |
| 40817 | | |
| 40818 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 40819 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms |
| 40820 | | average map value = 0.009088, steps = 28 |
| 40821 | | shifted from previous position = 0.0256 |
| 40822 | | rotated from previous position = 0.0724 degrees |
| 40823 | | atoms outside contour = 2702, contour level = 0.0064458 |
| 40824 | | |
| 40825 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to |
| 40826 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 40827 | | Matrix rotation and translation |
| 40828 | | 0.99738262 -0.01494067 0.07074384 -75.05761397 |
| 40829 | | 0.01341495 0.99966812 0.02199300 -76.61165845 |
| 40830 | | -0.07104895 -0.02098641 0.99725203 -69.15128969 |
| 40831 | | Axis -0.28491025 0.93994347 0.18796920 |
| 40832 | | Axis point -854.68760792 0.00000000 1285.59288630 |
| 40833 | | Rotation angle (degrees) 4.32571285 |
| 40834 | | Shift along axis -63.62425729 |
| 40835 | | |
| 40836 | | |
| 40837 | | > fitmap #27.1 inMap #34 |
| 40838 | | |
| 40839 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 40840 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms |
| 40841 | | average map value = 0.009088, steps = 44 |
| 40842 | | shifted from previous position = 0.0101 |
| 40843 | | rotated from previous position = 0.0174 degrees |
| 40844 | | atoms outside contour = 2698, contour level = 0.0064458 |
| 40845 | | |
| 40846 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to |
| 40847 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 40848 | | Matrix rotation and translation |
| 40849 | | 0.99737310 -0.01510216 0.07084371 -75.06002751 |
| 40850 | | 0.01355699 0.99966071 0.02224125 -76.66278390 |
| 40851 | | -0.07115556 -0.02122240 0.99723944 -69.12245521 |
| 40852 | | Axis -0.28737765 0.93888604 0.18949167 |
| 40853 | | Axis point -852.18252975 0.00000000 1285.52549761 |
| 40854 | | Rotation angle (degrees) 4.33691254 |
| 40855 | | Shift along axis -63.50517285 |
| 40856 | | |
| 40857 | | |
| 40858 | | > fitmap #27.1 inMap #34 |
| 40859 | | |
| 40860 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 40861 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms |
| 40862 | | average map value = 0.009088, steps = 44 |
| 40863 | | shifted from previous position = 0.00135 |
| 40864 | | rotated from previous position = 0.00484 degrees |
| 40865 | | atoms outside contour = 2701, contour level = 0.0064458 |
| 40866 | | |
| 40867 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to |
| 40868 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 40869 | | Matrix rotation and translation |
| 40870 | | 0.99737289 -0.01503306 0.07086129 -75.07004040 |
| 40871 | | 0.01349094 0.99966272 0.02219114 -76.65298501 |
| 40872 | | -0.07117099 -0.02117685 0.99723930 -69.12606492 |
| 40873 | | Axis -0.28678690 0.93924102 0.18862552 |
| 40874 | | Axis point -852.79462738 0.00000000 1284.79440303 |
| 40875 | | Rotation angle (degrees) 4.33628014 |
| 40876 | | Shift along axis -63.50546312 |
| 40877 | | |
| 40878 | | |
| 40879 | | > fitmap #27.1 inMap #34 |
| 40880 | | |
| 40881 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 40882 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms |
| 40883 | | average map value = 0.009088, steps = 44 |
| 40884 | | shifted from previous position = 0.000948 |
| 40885 | | rotated from previous position = 0.00317 degrees |
| 40886 | | atoms outside contour = 2701, contour level = 0.0064458 |
| 40887 | | |
| 40888 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to |
| 40889 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 40890 | | Matrix rotation and translation |
| 40891 | | 0.99737635 -0.01502750 0.07081379 -75.06232257 |
| 40892 | | 0.01348836 0.99966337 0.02216344 -76.64796013 |
| 40893 | | -0.07112301 -0.02115013 0.99724329 -69.13037088 |
| 40894 | | Axis -0.28662951 0.93927310 0.18870499 |
| 40895 | | Axis point -853.26698506 0.00000000 1285.50345865 |
| 40896 | | Rotation angle (degrees) 4.33321102 |
| 40897 | | Shift along axis -63.52353651 |
| 40898 | | |
| 40899 | | |
| 40900 | | > fitmap #27.1 inMap #34 |
| 40901 | | |
| 40902 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 40903 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms |
| 40904 | | average map value = 0.009088, steps = 44 |
| 40905 | | shifted from previous position = 0.000891 |
| 40906 | | rotated from previous position = 0.00255 degrees |
| 40907 | | atoms outside contour = 2701, contour level = 0.0064458 |
| 40908 | | |
| 40909 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to |
| 40910 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 40911 | | Matrix rotation and translation |
| 40912 | | 0.99737361 -0.01503364 0.07085101 -75.06823109 |
| 40913 | | 0.01349203 0.99966279 0.02218709 -76.65241101 |
| 40914 | | -0.07116067 -0.02117289 0.99724013 -69.12677004 |
| 40915 | | Axis -0.28677433 0.93923729 0.18866318 |
| 40916 | | Axis point -852.87740114 0.00000000 1284.96331132 |
| 40917 | | Rotation angle (degrees) 4.33566718 |
| 40918 | | Shift along axis -63.50883719 |
| 40919 | | |
| 40920 | | |
| 40921 | | > hide #!34 models |
| 40922 | | |
| 40923 | | > select clear |
| 40924 | | |
| 40925 | | Drag select of 213 residues |
| 40926 | | |
| 40927 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 40928 | | |
| 40929 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 40930 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms |
| 40931 | | average map value = 0.01022, steps = 64 |
| 40932 | | shifted from previous position = 0.231 |
| 40933 | | rotated from previous position = 1.38 degrees |
| 40934 | | atoms outside contour = 713, contour level = 0.0064458 |
| 40935 | | |
| 40936 | | |
| 40937 | | > show #!34 models |
| 40938 | | |
| 40939 | | Drag select of 1 residues, 34 relion_locres_filtered_20240326_GT.mrc |
| 40940 | | |
| 40941 | | > select clear |
| 40942 | | |
| 40943 | | > hide #!34 models |
| 40944 | | |
| 40945 | | Drag select of 213 residues |
| 40946 | | |
| 40947 | | > show #!34 models |
| 40948 | | |
| 40949 | | > ui mousemode right "translate selected models" |
| 40950 | | |
| 40951 | | > view matrix models |
| 40952 | | > #27.1,0.9967,-0.027521,0.07635,-8.2465,0.026597,0.99956,0.013092,-2.2807,-0.076677,-0.011018,0.997,5.9858 |
| 40953 | | |
| 40954 | | > view matrix models |
| 40955 | | > #27.1,0.9967,-0.027521,0.07635,-9.0898,0.026597,0.99956,0.013092,-0.98399,-0.076677,-0.011018,0.997,6.4267 |
| 40956 | | |
| 40957 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 40958 | | |
| 40959 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 40960 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms |
| 40961 | | average map value = 0.01022, steps = 64 |
| 40962 | | shifted from previous position = 1.2 |
| 40963 | | rotated from previous position = 0.169 degrees |
| 40964 | | atoms outside contour = 716, contour level = 0.0064458 |
| 40965 | | |
| 40966 | | |
| 40967 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 40968 | | |
| 40969 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 40970 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms |
| 40971 | | average map value = 0.01022, steps = 44 |
| 40972 | | shifted from previous position = 0.0112 |
| 40973 | | rotated from previous position = 0.073 degrees |
| 40974 | | atoms outside contour = 714, contour level = 0.0064458 |
| 40975 | | |
| 40976 | | |
| 40977 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 40978 | | |
| 40979 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 40980 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms |
| 40981 | | average map value = 0.01022, steps = 40 |
| 40982 | | shifted from previous position = 0.00894 |
| 40983 | | rotated from previous position = 0.0289 degrees |
| 40984 | | atoms outside contour = 715, contour level = 0.0064458 |
| 40985 | | |
| 40986 | | |
| 40987 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 40988 | | |
| 40989 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 40990 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms |
| 40991 | | average map value = 0.01022, steps = 44 |
| 40992 | | shifted from previous position = 0.0109 |
| 40993 | | rotated from previous position = 0.0166 degrees |
| 40994 | | atoms outside contour = 715, contour level = 0.0064458 |
| 40995 | | |
| 40996 | | |
| 40997 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 40998 | | |
| 40999 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 41000 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms |
| 41001 | | average map value = 0.01022, steps = 44 |
| 41002 | | shifted from previous position = 0.0115 |
| 41003 | | rotated from previous position = 0.0685 degrees |
| 41004 | | atoms outside contour = 715, contour level = 0.0064458 |
| 41005 | | |
| 41006 | | |
| 41007 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 41008 | | |
| 41009 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 41010 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms |
| 41011 | | average map value = 0.01022, steps = 44 |
| 41012 | | shifted from previous position = 0.0099 |
| 41013 | | rotated from previous position = 0.0603 degrees |
| 41014 | | atoms outside contour = 715, contour level = 0.0064458 |
| 41015 | | |
| 41016 | | |
| 41017 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 41018 | | |
| 41019 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 41020 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms |
| 41021 | | average map value = 0.01022, steps = 44 |
| 41022 | | shifted from previous position = 0.0113 |
| 41023 | | rotated from previous position = 0.0415 degrees |
| 41024 | | atoms outside contour = 715, contour level = 0.0064458 |
| 41025 | | |
| 41026 | | |
| 41027 | | > fitmap #27.1 inMap #34 |
| 41028 | | |
| 41029 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 41030 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms |
| 41031 | | average map value = 0.009076, steps = 48 |
| 41032 | | shifted from previous position = 0.846 |
| 41033 | | rotated from previous position = 0.813 degrees |
| 41034 | | atoms outside contour = 2693, contour level = 0.0064458 |
| 41035 | | |
| 41036 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to |
| 41037 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 41038 | | Matrix rotation and translation |
| 41039 | | 0.99697850 -0.00319250 0.07761238 -77.02470711 |
| 41040 | | 0.00184708 0.99984689 0.01740065 -75.52589375 |
| 41041 | | -0.07765605 -0.01720472 0.99683175 -69.23099659 |
| 41042 | | Axis -0.21742804 0.97556263 0.03166404 |
| 41043 | | Axis point -913.19688324 0.00000000 1122.51320803 |
| 41044 | | Rotation angle (degrees) 4.56436218 |
| 41045 | | Shift along axis -59.12504170 |
| 41046 | | |
| 41047 | | |
| 41048 | | > fitmap #27.1 inMap #34 |
| 41049 | | |
| 41050 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 41051 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms |
| 41052 | | average map value = 0.009076, steps = 44 |
| 41053 | | shifted from previous position = 0.0308 |
| 41054 | | rotated from previous position = 0.0897 degrees |
| 41055 | | atoms outside contour = 2689, contour level = 0.0064458 |
| 41056 | | |
| 41057 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to |
| 41058 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 41059 | | Matrix rotation and translation |
| 41060 | | 0.99686897 -0.00260304 0.07902841 -77.33100146 |
| 41061 | | 0.00121206 0.99984360 0.01764388 -75.55803998 |
| 41062 | | -0.07906198 -0.01749285 0.99671621 -69.14792570 |
| 41063 | | Axis -0.21690282 0.97590907 0.02355103 |
| 41064 | | Axis point -902.98601924 0.00000000 1103.56131090 |
| 41065 | | Rotation angle (degrees) 4.64584567 |
| 41066 | | Shift along axis -58.59296883 |
| 41067 | | |
| 41068 | | |
| 41069 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 41070 | | |
| 41071 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 41072 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms |
| 41073 | | average map value = 0.01022, steps = 68 |
| 41074 | | shifted from previous position = 0.456 |
| 41075 | | rotated from previous position = 0.855 degrees |
| 41076 | | atoms outside contour = 715, contour level = 0.0064458 |
| 41077 | | |
| 41078 | | |
| 41079 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 41080 | | |
| 41081 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 41082 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms |
| 41083 | | average map value = 0.01022, steps = 44 |
| 41084 | | shifted from previous position = 0.0348 |
| 41085 | | rotated from previous position = 0.0347 degrees |
| 41086 | | atoms outside contour = 717, contour level = 0.0064458 |
| 41087 | | |
| 41088 | | |
| 41089 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 41090 | | |
| 41091 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 41092 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms |
| 41093 | | average map value = 0.01022, steps = 40 |
| 41094 | | shifted from previous position = 0.0284 |
| 41095 | | rotated from previous position = 0.0451 degrees |
| 41096 | | atoms outside contour = 716, contour level = 0.0064458 |
| 41097 | | |
| 41098 | | |
| 41099 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 41100 | | |
| 41101 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 41102 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms |
| 41103 | | average map value = 0.01022, steps = 44 |
| 41104 | | shifted from previous position = 0.0273 |
| 41105 | | rotated from previous position = 0.0318 degrees |
| 41106 | | atoms outside contour = 715, contour level = 0.0064458 |
| 41107 | | |
| 41108 | | |
| 41109 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 41110 | | |
| 41111 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 41112 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms |
| 41113 | | average map value = 0.01022, steps = 60 |
| 41114 | | shifted from previous position = 0.0254 |
| 41115 | | rotated from previous position = 0.0716 degrees |
| 41116 | | atoms outside contour = 715, contour level = 0.0064458 |
| 41117 | | |
| 41118 | | |
| 41119 | | > fitmap #27.1 inMap #34 |
| 41120 | | |
| 41121 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 41122 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms |
| 41123 | | average map value = 0.00912, steps = 48 |
| 41124 | | shifted from previous position = 0.259 |
| 41125 | | rotated from previous position = 0.482 degrees |
| 41126 | | atoms outside contour = 2671, contour level = 0.0064458 |
| 41127 | | |
| 41128 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to |
| 41129 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 41130 | | Matrix rotation and translation |
| 41131 | | 0.99623283 0.00017687 0.08671860 -78.98362762 |
| 41132 | | -0.00185569 0.99981242 0.01927914 -75.96257392 |
| 41133 | | -0.08669893 -0.01936744 0.99604628 -68.64358733 |
| 41134 | | Axis -0.21750268 0.97599269 -0.01143919 |
| 41135 | | Axis point -845.44396193 0.00000000 1014.97033683 |
| 41136 | | Rotation angle (degrees) 5.09696944 |
| 41137 | | Shift along axis -56.17453882 |
| 41138 | | |
| 41139 | | |
| 41140 | | > fitmap #27.1 inMap #34 |
| 41141 | | |
| 41142 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 41143 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms |
| 41144 | | average map value = 0.00912, steps = 64 |
| 41145 | | shifted from previous position = 0.037 |
| 41146 | | rotated from previous position = 0.0375 degrees |
| 41147 | | atoms outside contour = 2678, contour level = 0.0064458 |
| 41148 | | |
| 41149 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to |
| 41150 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 41151 | | Matrix rotation and translation |
| 41152 | | 0.99623632 0.00063876 0.08667628 -79.01861460 |
| 41153 | | -0.00227493 0.99982106 0.01877938 -75.84138965 |
| 41154 | | -0.08664878 -0.01890588 0.99605951 -68.70039236 |
| 41155 | | Axis -0.21243277 0.97703764 -0.01642454 |
| 41156 | | Axis point -849.55401410 0.00000000 1012.46591456 |
| 41157 | | Rotation angle (degrees) 5.08878185 |
| 41158 | | Shift along axis -56.18537721 |
| 41159 | | |
| 41160 | | |
| 41161 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 41162 | | |
| 41163 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 41164 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms |
| 41165 | | average map value = 0.01022, steps = 40 |
| 41166 | | shifted from previous position = 0.127 |
| 41167 | | rotated from previous position = 0.39 degrees |
| 41168 | | atoms outside contour = 715, contour level = 0.0064458 |
| 41169 | | |
| 41170 | | |
| 41171 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 41172 | | |
| 41173 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 41174 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms |
| 41175 | | average map value = 0.01022, steps = 44 |
| 41176 | | shifted from previous position = 0.0109 |
| 41177 | | rotated from previous position = 0.15 degrees |
| 41178 | | atoms outside contour = 716, contour level = 0.0064458 |
| 41179 | | |
| 41180 | | |
| 41181 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 41182 | | |
| 41183 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 41184 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms |
| 41185 | | average map value = 0.01022, steps = 44 |
| 41186 | | shifted from previous position = 0.0044 |
| 41187 | | rotated from previous position = 0.0418 degrees |
| 41188 | | atoms outside contour = 715, contour level = 0.0064458 |
| 41189 | | |
| 41190 | | |
| 41191 | | > fitmap #27.1 inMap #34 |
| 41192 | | |
| 41193 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 41194 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms |
| 41195 | | average map value = 0.009126, steps = 40 |
| 41196 | | shifted from previous position = 0.0991 |
| 41197 | | rotated from previous position = 0.184 degrees |
| 41198 | | atoms outside contour = 2668, contour level = 0.0064458 |
| 41199 | | |
| 41200 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to |
| 41201 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 41202 | | Matrix rotation and translation |
| 41203 | | 0.99597070 0.00177957 0.08966155 -79.64525863 |
| 41204 | | -0.00346690 0.99981975 0.01866660 -75.87705675 |
| 41205 | | -0.08961217 -0.01890223 0.99579735 -68.56101837 |
| 41206 | | Axis -0.20502187 0.97833853 -0.02863122 |
| 41207 | | Axis point -828.87063691 0.00000000 978.95595835 |
| 41208 | | Rotation angle (degrees) 5.25689876 |
| 41209 | | Shift along axis -55.94144291 |
| 41210 | | |
| 41211 | | |
| 41212 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 41213 | | |
| 41214 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 41215 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms |
| 41216 | | average map value = 0.01022, steps = 44 |
| 41217 | | shifted from previous position = 0.0905 |
| 41218 | | rotated from previous position = 0.143 degrees |
| 41219 | | atoms outside contour = 715, contour level = 0.0064458 |
| 41220 | | |
| 41221 | | |
| 41222 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 41223 | | |
| 41224 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 41225 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms |
| 41226 | | average map value = 0.01022, steps = 44 |
| 41227 | | shifted from previous position = 0.0183 |
| 41228 | | rotated from previous position = 0.0546 degrees |
| 41229 | | atoms outside contour = 716, contour level = 0.0064458 |
| 41230 | | |
| 41231 | | |
| 41232 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 41233 | | |
| 41234 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 41235 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms |
| 41236 | | average map value = 0.01022, steps = 60 |
| 41237 | | shifted from previous position = 0.0197 |
| 41238 | | rotated from previous position = 0.0756 degrees |
| 41239 | | atoms outside contour = 716, contour level = 0.0064458 |
| 41240 | | |
| 41241 | | |
| 41242 | | > fitmap #27.1 inMap #34 |
| 41243 | | |
| 41244 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 41245 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms |
| 41246 | | average map value = 0.009129, steps = 40 |
| 41247 | | shifted from previous position = 0.051 |
| 41248 | | rotated from previous position = 0.123 degrees |
| 41249 | | atoms outside contour = 2667, contour level = 0.0064458 |
| 41250 | | |
| 41251 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to |
| 41252 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 41253 | | Matrix rotation and translation |
| 41254 | | 0.99580165 0.00255344 0.09150166 -80.01967767 |
| 41255 | | -0.00420302 0.99983203 0.01783972 -75.76301892 |
| 41256 | | -0.09144073 -0.01814941 0.99564511 -68.54407390 |
| 41257 | | Axis -0.19289763 0.98055039 -0.03621386 |
| 41258 | | Axis point -817.44879003 0.00000000 955.84816463 |
| 41259 | | Rotation angle (degrees) 5.35265165 |
| 41260 | | Shift along axis -56.37160562 |
| 41261 | | |
| 41262 | | |
| 41263 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 41264 | | |
| 41265 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 41266 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms |
| 41267 | | average map value = 0.01022, steps = 48 |
| 41268 | | shifted from previous position = 0.0962 |
| 41269 | | rotated from previous position = 0.132 degrees |
| 41270 | | atoms outside contour = 716, contour level = 0.0064458 |
| 41271 | | |
| 41272 | | |
| 41273 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 41274 | | |
| 41275 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 41276 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms |
| 41277 | | average map value = 0.01022, steps = 48 |
| 41278 | | shifted from previous position = 0.0434 |
| 41279 | | rotated from previous position = 0.0993 degrees |
| 41280 | | atoms outside contour = 715, contour level = 0.0064458 |
| 41281 | | |
| 41282 | | |
| 41283 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 41284 | | |
| 41285 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 41286 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms |
| 41287 | | average map value = 0.01022, steps = 40 |
| 41288 | | shifted from previous position = 0.0133 |
| 41289 | | rotated from previous position = 0.0949 degrees |
| 41290 | | atoms outside contour = 716, contour level = 0.0064458 |
| 41291 | | |
| 41292 | | |
| 41293 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 41294 | | |
| 41295 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 41296 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms |
| 41297 | | average map value = 0.01022, steps = 40 |
| 41298 | | shifted from previous position = 0.0188 |
| 41299 | | rotated from previous position = 0.0254 degrees |
| 41300 | | atoms outside contour = 715, contour level = 0.0064458 |
| 41301 | | |
| 41302 | | |
| 41303 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 41304 | | |
| 41305 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 41306 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms |
| 41307 | | average map value = 0.01022, steps = 44 |
| 41308 | | shifted from previous position = 0.0112 |
| 41309 | | rotated from previous position = 0.0716 degrees |
| 41310 | | atoms outside contour = 715, contour level = 0.0064458 |
| 41311 | | |
| 41312 | | |
| 41313 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 41314 | | |
| 41315 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 41316 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms |
| 41317 | | average map value = 0.01022, steps = 48 |
| 41318 | | shifted from previous position = 0.0402 |
| 41319 | | rotated from previous position = 0.0381 degrees |
| 41320 | | atoms outside contour = 714, contour level = 0.0064458 |
| 41321 | | |
| 41322 | | |
| 41323 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 41324 | | |
| 41325 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 41326 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms |
| 41327 | | average map value = 0.01022, steps = 48 |
| 41328 | | shifted from previous position = 0.0399 |
| 41329 | | rotated from previous position = 0.0162 degrees |
| 41330 | | atoms outside contour = 716, contour level = 0.0064458 |
| 41331 | | |
| 41332 | | |
| 41333 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 41334 | | |
| 41335 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 41336 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms |
| 41337 | | average map value = 0.01022, steps = 40 |
| 41338 | | shifted from previous position = 0.00454 |
| 41339 | | rotated from previous position = 0.0271 degrees |
| 41340 | | atoms outside contour = 715, contour level = 0.0064458 |
| 41341 | | |
| 41342 | | |
| 41343 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 41344 | | |
| 41345 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 41346 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms |
| 41347 | | average map value = 0.01022, steps = 40 |
| 41348 | | shifted from previous position = 0.000868 |
| 41349 | | rotated from previous position = 0.00269 degrees |
| 41350 | | atoms outside contour = 715, contour level = 0.0064458 |
| 41351 | | |
| 41352 | | |
| 41353 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 41354 | | |
| 41355 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 41356 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms |
| 41357 | | average map value = 0.01022, steps = 44 |
| 41358 | | shifted from previous position = 0.00921 |
| 41359 | | rotated from previous position = 0.0187 degrees |
| 41360 | | atoms outside contour = 715, contour level = 0.0064458 |
| 41361 | | |
| 41362 | | |
| 41363 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 41364 | | |
| 41365 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 41366 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms |
| 41367 | | average map value = 0.01022, steps = 40 |
| 41368 | | shifted from previous position = 0.0172 |
| 41369 | | rotated from previous position = 0.0878 degrees |
| 41370 | | atoms outside contour = 715, contour level = 0.0064458 |
| 41371 | | |
| 41372 | | |
| 41373 | | > fitmap #27.1 inMap #34 |
| 41374 | | |
| 41375 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 41376 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms |
| 41377 | | average map value = 0.009129, steps = 36 |
| 41378 | | shifted from previous position = 0.0299 |
| 41379 | | rotated from previous position = 0.127 degrees |
| 41380 | | atoms outside contour = 2669, contour level = 0.0064458 |
| 41381 | | |
| 41382 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to |
| 41383 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 41384 | | Matrix rotation and translation |
| 41385 | | 0.99565516 0.00325095 0.09306036 -80.33588472 |
| 41386 | | -0.00479502 0.99985445 0.01637330 -75.49861006 |
| 41387 | | -0.09299359 -0.01674838 0.99552583 -68.61163257 |
| 41388 | | Axis -0.17510766 0.98362995 -0.04253743 |
| 41389 | | Axis point -808.91233658 0.00000000 933.27466357 |
| 41390 | | Rotation angle (degrees) 5.42686925 |
| 41391 | | Shift along axis -57.27670241 |
| 41392 | | |
| 41393 | | |
| 41394 | | > fitmap #27.1 inMap #34 |
| 41395 | | |
| 41396 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 41397 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms |
| 41398 | | average map value = 0.009129, steps = 80 |
| 41399 | | shifted from previous position = 0.00424 |
| 41400 | | rotated from previous position = 0.0159 degrees |
| 41401 | | atoms outside contour = 2672, contour level = 0.0064458 |
| 41402 | | |
| 41403 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to |
| 41404 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 41405 | | Matrix rotation and translation |
| 41406 | | 0.99566955 0.00313415 0.09291031 -80.29974154 |
| 41407 | | -0.00469500 0.99985142 0.01658570 -75.53846381 |
| 41408 | | -0.09284452 -0.01695009 0.99553633 -68.59515076 |
| 41409 | | Axis -0.17751313 0.98324548 -0.04144162 |
| 41410 | | Axis point -809.32794560 0.00000000 935.78918938 |
| 41411 | | Rotation angle (degrees) 5.42024293 |
| 41412 | | Shift along axis -57.17590105 |
| 41413 | | |
| 41414 | | |
| 41415 | | > fitmap #27.1 inMap #34 |
| 41416 | | |
| 41417 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 41418 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms |
| 41419 | | average map value = 0.009129, steps = 48 |
| 41420 | | shifted from previous position = 0.0308 |
| 41421 | | rotated from previous position = 0.0142 degrees |
| 41422 | | atoms outside contour = 2667, contour level = 0.0064458 |
| 41423 | | |
| 41424 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to |
| 41425 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 41426 | | Matrix rotation and translation |
| 41427 | | 0.99566015 0.00300970 0.09301513 -80.31036379 |
| 41428 | | -0.00459013 0.99984864 0.01678183 -75.59942351 |
| 41429 | | -0.09295054 -0.01713595 0.99552326 -68.56232670 |
| 41430 | | Axis -0.17928253 0.98297714 -0.04017118 |
| 41431 | | Axis point -807.40100433 0.00000000 935.91398650 |
| 41432 | | Rotation angle (degrees) 5.42789937 |
| 41433 | | Shift along axis -57.16003031 |
| 41434 | | |
| 41435 | | |
| 41436 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 41437 | | |
| 41438 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 41439 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms |
| 41440 | | average map value = 0.01022, steps = 48 |
| 41441 | | shifted from previous position = 0.0898 |
| 41442 | | rotated from previous position = 0.141 degrees |
| 41443 | | atoms outside contour = 715, contour level = 0.0064458 |
| 41444 | | |
| 41445 | | |
| 41446 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 41447 | | |
| 41448 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 41449 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms |
| 41450 | | average map value = 0.01022, steps = 40 |
| 41451 | | shifted from previous position = 0.0154 |
| 41452 | | rotated from previous position = 0.0487 degrees |
| 41453 | | atoms outside contour = 718, contour level = 0.0064458 |
| 41454 | | |
| 41455 | | |
| 41456 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 41457 | | |
| 41458 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 41459 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms |
| 41460 | | average map value = 0.01022, steps = 52 |
| 41461 | | shifted from previous position = 0.0362 |
| 41462 | | rotated from previous position = 0.0578 degrees |
| 41463 | | atoms outside contour = 715, contour level = 0.0064458 |
| 41464 | | |
| 41465 | | |
| 41466 | | > select add #27.1 |
| 41467 | | |
| 41468 | | 6538 atoms, 6591 bonds, 911 residues, 1 model selected |
| 41469 | | |
| 41470 | | > select subtract #27.1 |
| 41471 | | |
| 41472 | | Nothing selected |
| 41473 | | |
| 41474 | | > show #27.2 models |
| 41475 | | |
| 41476 | | > fitmap #27.2 inMap #34 |
| 41477 | | |
| 41478 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) to map |
| 41479 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1407 atoms |
| 41480 | | average map value = 0.009081, steps = 44 |
| 41481 | | shifted from previous position = 0.0121 |
| 41482 | | rotated from previous position = 0.0235 degrees |
| 41483 | | atoms outside contour = 654, contour level = 0.0064458 |
| 41484 | | |
| 41485 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) relative to |
| 41486 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 41487 | | Matrix rotation and translation |
| 41488 | | 0.98950284 0.01456273 -0.14377777 -45.78107200 |
| 41489 | | 0.02414939 0.96425692 0.26386627 -113.43225746 |
| 41490 | | 0.14248133 -0.26456857 0.95378328 -31.21802132 |
| 41491 | | Axis -0.87916370 -0.47625287 0.01594945 |
| 41492 | | Axis point 0.00000000 -165.26762153 238.24622898 |
| 41493 | | Rotation angle (degrees) 17.48959966 |
| 41494 | | Shift along axis 93.77358484 |
| 41495 | | |
| 41496 | | |
| 41497 | | > fitmap #27.2 inMap #34 |
| 41498 | | |
| 41499 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) to map |
| 41500 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1407 atoms |
| 41501 | | average map value = 0.009081, steps = 48 |
| 41502 | | shifted from previous position = 0.00735 |
| 41503 | | rotated from previous position = 0.0304 degrees |
| 41504 | | atoms outside contour = 655, contour level = 0.0064458 |
| 41505 | | |
| 41506 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) relative to |
| 41507 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 41508 | | Matrix rotation and translation |
| 41509 | | 0.98957324 0.01436562 -0.14331239 -45.83372764 |
| 41510 | | 0.02419385 0.96429592 0.26371963 -113.40796082 |
| 41511 | | 0.14198405 -0.26443716 0.95389387 -31.25289470 |
| 41512 | | Axis -0.87972357 -0.47520359 0.01637037 |
| 41513 | | Axis point 0.00000000 -165.61758530 238.76706811 |
| 41514 | | Rotation angle (degrees) 17.46861769 |
| 41515 | | Shift along axis 93.70125911 |
| 41516 | | |
| 41517 | | |
| 41518 | | > fitmap #27.2 inMap #34 |
| 41519 | | |
| 41520 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) to map |
| 41521 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1407 atoms |
| 41522 | | average map value = 0.009081, steps = 48 |
| 41523 | | shifted from previous position = 0.00376 |
| 41524 | | rotated from previous position = 0.02 degrees |
| 41525 | | atoms outside contour = 654, contour level = 0.0064458 |
| 41526 | | |
| 41527 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) relative to |
| 41528 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 41529 | | Matrix rotation and translation |
| 41530 | | 0.98958048 0.01458074 -0.14324060 -45.88233885 |
| 41531 | | 0.02400733 0.96422242 0.26400525 -113.44903982 |
| 41532 | | 0.14196519 -0.26469327 0.95382564 -31.20027553 |
| 41533 | | Axis -0.87999979 -0.47471486 0.01569022 |
| 41534 | | Axis point 0.00000000 -165.08561338 238.78900449 |
| 41535 | | Rotation angle (degrees) 17.48144690 |
| 41536 | | Shift along axis 93.74285376 |
| 41537 | | |
| 41538 | | |
| 41539 | | > hide #!29 models |
| 41540 | | |
| 41541 | | > show #!29 models |
| 41542 | | |
| 41543 | | > fitmap #29 inMap #34 |
| 41544 | | |
| 41545 | | Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#29) to map |
| 41546 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2069 atoms |
| 41547 | | average map value = 0.01228, steps = 28 |
| 41548 | | shifted from previous position = 0.0214 |
| 41549 | | rotated from previous position = 0.0489 degrees |
| 41550 | | atoms outside contour = 765, contour level = 0.0064458 |
| 41551 | | |
| 41552 | | Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#29) relative |
| 41553 | | to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 41554 | | Matrix rotation and translation |
| 41555 | | -0.55837192 -0.72641866 0.40067033 245.13415111 |
| 41556 | | -0.44707968 -0.14334516 -0.88293370 214.36498407 |
| 41557 | | 0.69881367 -0.67213695 -0.24472711 213.96241331 |
| 41558 | | Axis 0.45851933 -0.64851326 0.60761054 |
| 41559 | | Axis point 184.77340267 0.00000000 225.16272815 |
| 41560 | | Rotation angle (degrees) 166.71076992 |
| 41561 | | Shift along axis 103.38602932 |
| 41562 | | |
| 41563 | | |
| 41564 | | > fitmap #29 inMap #34 |
| 41565 | | |
| 41566 | | Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#29) to map |
| 41567 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2069 atoms |
| 41568 | | average map value = 0.01228, steps = 40 |
| 41569 | | shifted from previous position = 0.0234 |
| 41570 | | rotated from previous position = 0.0463 degrees |
| 41571 | | atoms outside contour = 766, contour level = 0.0064458 |
| 41572 | | |
| 41573 | | Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#29) relative |
| 41574 | | to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 41575 | | Matrix rotation and translation |
| 41576 | | -0.55871778 -0.72640821 0.40020688 245.13655175 |
| 41577 | | -0.44637102 -0.14331619 -0.88329687 214.34807082 |
| 41578 | | 0.69899023 -0.67215443 -0.24417427 213.95068338 |
| 41579 | | Axis 0.45827663 -0.64849787 0.60781003 |
| 41580 | | Axis point 184.70215567 0.00000000 225.22715233 |
| 41581 | | Rotation angle (degrees) 166.68139627 |
| 41582 | | Shift along axis 103.37745705 |
| 41583 | | |
| 41584 | | |
| 41585 | | > hide #!29 models |
| 41586 | | |
| 41587 | | > show #!29 models |
| 41588 | | |
| 41589 | | > hide #28 models |
| 41590 | | |
| 41591 | | > show #28 models |
| 41592 | | |
| 41593 | | > fitmap #28 inMap #34 |
| 41594 | | |
| 41595 | | Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#28) to map |
| 41596 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1128 atoms |
| 41597 | | average map value = 0.007773, steps = 48 |
| 41598 | | shifted from previous position = 0.0338 |
| 41599 | | rotated from previous position = 0.0799 degrees |
| 41600 | | atoms outside contour = 478, contour level = 0.0064458 |
| 41601 | | |
| 41602 | | Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#28) relative |
| 41603 | | to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 41604 | | Matrix rotation and translation |
| 41605 | | -0.56964807 -0.71670905 0.40228001 245.63471109 |
| 41606 | | -0.48593724 -0.10104432 -0.86813307 216.22928932 |
| 41607 | | 0.66284694 -0.69001317 -0.29071592 214.86544464 |
| 41608 | | Axis 0.45555491 -0.66641932 0.59021607 |
| 41609 | | Axis point 184.94701523 0.00000000 218.18285260 |
| 41610 | | Rotation angle (degrees) 168.72619893 |
| 41611 | | Shift along axis 94.61776347 |
| 41612 | | |
| 41613 | | |
| 41614 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 41615 | | > dataset/Chimera sessions/20240406_leaf_fitting_v22.cxs" |
| 41616 | | |
| 41617 | | > show #!30 models |
| 41618 | | |
| 41619 | | > show #31.1 models |
| 41620 | | |
| 41621 | | > fitmap #31.1 inMap #34 |
| 41622 | | |
| 41623 | | Fit molecule 5mc7_human_zeta1COPI.cif A (#31.1) to map |
| 41624 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1187 atoms |
| 41625 | | average map value = 0.01025, steps = 28 |
| 41626 | | shifted from previous position = 0.0462 |
| 41627 | | rotated from previous position = 0.156 degrees |
| 41628 | | atoms outside contour = 434, contour level = 0.0064458 |
| 41629 | | |
| 41630 | | Position of 5mc7_human_zeta1COPI.cif A (#31.1) relative to |
| 41631 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 41632 | | Matrix rotation and translation |
| 41633 | | 0.97526237 0.22047467 -0.01594455 223.15731989 |
| 41634 | | -0.22022010 0.97531421 0.01628817 253.45061674 |
| 41635 | | 0.01914207 -0.01237393 0.99974020 253.90603445 |
| 41636 | | Axis -0.06469745 -0.07919918 -0.99475712 |
| 41637 | | Axis point 1137.36188509 -800.30950272 0.00000000 |
| 41638 | | Rotation angle (degrees) 12.79766331 |
| 41639 | | Shift along axis -287.08562568 |
| 41640 | | |
| 41641 | | |
| 41642 | | > hide #!31 models |
| 41643 | | |
| 41644 | | > show #!31 models |
| 41645 | | |
| 41646 | | > hide #!31 models |
| 41647 | | |
| 41648 | | > show #!31 models |
| 41649 | | |
| 41650 | | > hide #!31 models |
| 41651 | | |
| 41652 | | > show #!31 models |
| 41653 | | |
| 41654 | | > color #31 #fffb00ff models |
| 41655 | | |
| 41656 | | > combine 31 |
| 41657 | | |
| 41658 | | Expected a keyword |
| 41659 | | |
| 41660 | | > combine #31 |
| 41661 | | |
| 41662 | | > ui tool show Matchmaker |
| 41663 | | |
| 41664 | | > matchmaker #39 to #28 |
| 41665 | | |
| 41666 | | Parameters |
| 41667 | | --- |
| 41668 | | Chain pairing | bb |
| 41669 | | Alignment algorithm | Needleman-Wunsch |
| 41670 | | Similarity matrix | BLOSUM-62 |
| 41671 | | SS fraction | 0.3 |
| 41672 | | Gap open (HH/SS/other) | 18/18/6 |
| 41673 | | Gap extend | 1 |
| 41674 | | SS matrix | | | H | S | O |
| 41675 | | ---|---|---|--- |
| 41676 | | H | 6 | -9 | -6 |
| 41677 | | S | | 6 | -6 |
| 41678 | | O | | | 4 |
| 41679 | | Iteration cutoff | 2 |
| 41680 | | |
| 41681 | | Matchmaker copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C, chain C (#28) |
| 41682 | | with copy of 5mc7_human_zeta1COPI.cif A, chain A (#39), sequence alignment |
| 41683 | | score = 650.6 |
| 41684 | | RMSD between 129 pruned atom pairs is 0.558 angstroms; (across all 135 pairs: |
| 41685 | | 1.041) |
| 41686 | | |
| 41687 | | |
| 41688 | | > matchmaker #39 to #28 |
| 41689 | | |
| 41690 | | Parameters |
| 41691 | | --- |
| 41692 | | Chain pairing | bb |
| 41693 | | Alignment algorithm | Needleman-Wunsch |
| 41694 | | Similarity matrix | BLOSUM-62 |
| 41695 | | SS fraction | 0.3 |
| 41696 | | Gap open (HH/SS/other) | 18/18/6 |
| 41697 | | Gap extend | 1 |
| 41698 | | SS matrix | | | H | S | O |
| 41699 | | ---|---|---|--- |
| 41700 | | H | 6 | -9 | -6 |
| 41701 | | S | | 6 | -6 |
| 41702 | | O | | | 4 |
| 41703 | | Iteration cutoff | 2 |
| 41704 | | |
| 41705 | | Matchmaker copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C, chain C (#28) |
| 41706 | | with copy of 5mc7_human_zeta1COPI.cif A, chain A (#39), sequence alignment |
| 41707 | | score = 650.6 |
| 41708 | | RMSD between 129 pruned atom pairs is 0.558 angstroms; (across all 135 pairs: |
| 41709 | | 1.041) |
| 41710 | | |
| 41711 | | |
| 41712 | | > fitmap #39 inMap #34 |
| 41713 | | |
| 41714 | | Fit molecule copy of 5mc7_human_zeta1COPI.cif A (#39) to map |
| 41715 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1187 atoms |
| 41716 | | average map value = 0.007568, steps = 64 |
| 41717 | | shifted from previous position = 0.552 |
| 41718 | | rotated from previous position = 4.03 degrees |
| 41719 | | atoms outside contour = 536, contour level = 0.0064458 |
| 41720 | | |
| 41721 | | Position of copy of 5mc7_human_zeta1COPI.cif A (#39) relative to |
| 41722 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 41723 | | Matrix rotation and translation |
| 41724 | | 0.45323339 -0.88826503 -0.07459701 293.41129101 |
| 41725 | | 0.73450969 0.41957092 -0.53334393 178.67488835 |
| 41726 | | 0.50504950 0.18693706 0.84260283 234.70272149 |
| 41727 | | Axis 0.38565745 -0.31035804 0.86887641 |
| 41728 | | Axis point -122.80676595 292.32051362 0.00000000 |
| 41729 | | Rotation angle (degrees) 69.04076862 |
| 41730 | | Shift along axis 261.63072132 |
| 41731 | | |
| 41732 | | |
| 41733 | | > fitmap #39 inMap #34 |
| 41734 | | |
| 41735 | | Fit molecule copy of 5mc7_human_zeta1COPI.cif A (#39) to map |
| 41736 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1187 atoms |
| 41737 | | average map value = 0.007567, steps = 56 |
| 41738 | | shifted from previous position = 0.0231 |
| 41739 | | rotated from previous position = 0.0788 degrees |
| 41740 | | atoms outside contour = 535, contour level = 0.0064458 |
| 41741 | | |
| 41742 | | Position of copy of 5mc7_human_zeta1COPI.cif A (#39) relative to |
| 41743 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 41744 | | Matrix rotation and translation |
| 41745 | | 0.45367818 -0.88801865 -0.07482627 293.40168039 |
| 41746 | | 0.73362359 0.41982599 -0.53436182 178.70125616 |
| 41747 | | 0.50593728 0.18753399 0.84193732 234.67904282 |
| 41748 | | Axis 0.38652479 -0.31095832 0.86827617 |
| 41749 | | Axis point -123.26089371 292.36450112 0.00000000 |
| 41750 | | Rotation angle (degrees) 69.03971476 |
| 41751 | | Shift along axis 261.60460100 |
| 41752 | | |
| 41753 | | |
| 41754 | | > fitmap #39 inMap #34 |
| 41755 | | |
| 41756 | | Fit molecule copy of 5mc7_human_zeta1COPI.cif A (#39) to map |
| 41757 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1187 atoms |
| 41758 | | average map value = 0.007567, steps = 28 |
| 41759 | | shifted from previous position = 0.0272 |
| 41760 | | rotated from previous position = 0.0732 degrees |
| 41761 | | atoms outside contour = 534, contour level = 0.0064458 |
| 41762 | | |
| 41763 | | Position of copy of 5mc7_human_zeta1COPI.cif A (#39) relative to |
| 41764 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 41765 | | Matrix rotation and translation |
| 41766 | | 0.45363623 -0.88804369 -0.07478346 293.38456518 |
| 41767 | | 0.73300647 0.41952936 -0.53544058 178.74461709 |
| 41768 | | 0.50686849 0.18807849 0.84125549 234.67417154 |
| 41769 | | Axis 0.38731294 -0.31136889 0.86777768 |
| 41770 | | Axis point -123.53315687 292.27092947 0.00000000 |
| 41771 | | Rotation angle (degrees) 69.07101563 |
| 41772 | | Shift along axis 261.62113379 |
| 41773 | | |
| 41774 | | |
| 41775 | | > hide #!31 models |
| 41776 | | |
| 41777 | | > show #!31 models |
| 41778 | | |
| 41779 | | > hide #!31 models |
| 41780 | | |
| 41781 | | > show #!31 models |
| 41782 | | |
| 41783 | | > hide #!31 models |
| 41784 | | |
| 41785 | | > show #!31 models |
| 41786 | | |
| 41787 | | > hide #!31 models |
| 41788 | | |
| 41789 | | > show #!31 models |
| 41790 | | |
| 41791 | | > hide #!31 models |
| 41792 | | |
| 41793 | | > show #!31 models |
| 41794 | | |
| 41795 | | > hide #39 models |
| 41796 | | |
| 41797 | | > show #39 models |
| 41798 | | |
| 41799 | | > fitmap #39 inMap #34 |
| 41800 | | |
| 41801 | | Fit molecule copy of 5mc7_human_zeta1COPI.cif A (#39) to map |
| 41802 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1187 atoms |
| 41803 | | average map value = 0.007568, steps = 44 |
| 41804 | | shifted from previous position = 0.0439 |
| 41805 | | rotated from previous position = 0.146 degrees |
| 41806 | | atoms outside contour = 536, contour level = 0.0064458 |
| 41807 | | |
| 41808 | | Position of copy of 5mc7_human_zeta1COPI.cif A (#39) relative to |
| 41809 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 41810 | | Matrix rotation and translation |
| 41811 | | 0.45344620 -0.88815635 -0.07459780 293.40980917 |
| 41812 | | 0.73441853 0.41975085 -0.53332789 178.66982431 |
| 41813 | | 0.50499105 0.18704950 0.84261291 234.69988042 |
| 41814 | | Axis 0.38574095 -0.31035281 0.86884121 |
| 41815 | | Axis point -122.87799694 292.33760915 0.00000000 |
| 41816 | | Rotation angle (degrees) 69.02841056 |
| 41817 | | Shift along axis 261.64642428 |
| 41818 | | |
| 41819 | | |
| 41820 | | > hide #!31 models |
| 41821 | | |
| 41822 | | > show #!31 models |
| 41823 | | |
| 41824 | | > fitmap #31.1 inMap #34 |
| 41825 | | |
| 41826 | | Fit molecule 5mc7_human_zeta1COPI.cif A (#31.1) to map |
| 41827 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1187 atoms |
| 41828 | | average map value = 0.01025, steps = 28 |
| 41829 | | shifted from previous position = 0.0354 |
| 41830 | | rotated from previous position = 0.114 degrees |
| 41831 | | atoms outside contour = 436, contour level = 0.0064458 |
| 41832 | | |
| 41833 | | Position of 5mc7_human_zeta1COPI.cif A (#31.1) relative to |
| 41834 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 41835 | | Matrix rotation and translation |
| 41836 | | 0.97523104 0.22046140 -0.01792165 223.17984380 |
| 41837 | | -0.22018019 0.97532115 0.01641132 253.47497719 |
| 41838 | | 0.02109743 -0.01205883 0.99970470 253.85976196 |
| 41839 | | Axis -0.06422597 -0.08802336 -0.99404573 |
| 41840 | | Axis point 1125.53912289 -801.68454544 0.00000000 |
| 41841 | | Rotation angle (degrees) 12.80540595 |
| 41842 | | Shift along axis -288.99387215 |
| 41843 | | |
| 41844 | | |
| 41845 | | > fitmap #28 inMap #34 |
| 41846 | | |
| 41847 | | Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#28) to map |
| 41848 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1128 atoms |
| 41849 | | average map value = 0.007771, steps = 64 |
| 41850 | | shifted from previous position = 0.0341 |
| 41851 | | rotated from previous position = 0.0862 degrees |
| 41852 | | atoms outside contour = 477, contour level = 0.0064458 |
| 41853 | | |
| 41854 | | Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#28) relative |
| 41855 | | to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 41856 | | Matrix rotation and translation |
| 41857 | | -0.57010387 -0.71670663 0.40163810 245.69177739 |
| 41858 | | -0.48464318 -0.10137131 -0.86881807 216.19575528 |
| 41859 | | 0.66340226 -0.68996771 -0.28955481 214.80984392 |
| 41860 | | Axis 0.45521912 -0.66625559 0.59065984 |
| 41861 | | Axis point 184.87677858 0.00000000 218.31793898 |
| 41862 | | Rotation angle (degrees) 168.67089507 |
| 41863 | | Shift along axis 94.68151187 |
| 41864 | | |
| 41865 | | |
| 41866 | | > fitmap #28 inMap #34 |
| 41867 | | |
| 41868 | | Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#28) to map |
| 41869 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1128 atoms |
| 41870 | | average map value = 0.007772, steps = 44 |
| 41871 | | shifted from previous position = 0.0293 |
| 41872 | | rotated from previous position = 0.0689 degrees |
| 41873 | | atoms outside contour = 478, contour level = 0.0064458 |
| 41874 | | |
| 41875 | | Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#28) relative |
| 41876 | | to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 41877 | | Matrix rotation and translation |
| 41878 | | -0.56992216 -0.71677245 0.40177850 245.65582773 |
| 41879 | | -0.48554024 -0.10070443 -0.86839466 216.24734258 |
| 41880 | | 0.66290225 -0.68999700 -0.29062818 214.85494562 |
| 41881 | | Axis 0.45536928 -0.66653189 0.59023221 |
| 41882 | | Axis point 184.89711462 0.00000000 218.20500299 |
| 41883 | | Rotation angle (degrees) 168.70372386 |
| 41884 | | Shift along axis 94.54267400 |
| 41885 | | |
| 41886 | | |
| 41887 | | > fitmap #26.3 inMap #34 |
| 41888 | | |
| 41889 | | Fit molecule 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#26.3) to map |
| 41890 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1128 atoms |
| 41891 | | average map value = 0.01093, steps = 48 |
| 41892 | | shifted from previous position = 0.0209 |
| 41893 | | rotated from previous position = 0.0503 degrees |
| 41894 | | atoms outside contour = 359, contour level = 0.0064458 |
| 41895 | | |
| 41896 | | Position of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#26.3) relative to |
| 41897 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 41898 | | Matrix rotation and translation |
| 41899 | | -0.25085728 0.19318279 -0.94855207 329.71382244 |
| 41900 | | 0.71030721 0.70246559 -0.04478560 309.43561010 |
| 41901 | | 0.65767339 -0.68499817 -0.31343773 214.51778716 |
| 41902 | | Axis -0.35473060 -0.88998146 0.28652960 |
| 41903 | | Axis point -6.40508156 0.00000000 232.30177959 |
| 41904 | | Rotation angle (degrees) 115.52562396 |
| 41905 | | Shift along axis -330.88583868 |
| 41906 | | |
| 41907 | | |
| 41908 | | > fitmap #26.3 inMap #34 |
| 41909 | | |
| 41910 | | Fit molecule 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#26.3) to map |
| 41911 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1128 atoms |
| 41912 | | average map value = 0.01093, steps = 60 |
| 41913 | | shifted from previous position = 0.00782 |
| 41914 | | rotated from previous position = 0.0168 degrees |
| 41915 | | atoms outside contour = 359, contour level = 0.0064458 |
| 41916 | | |
| 41917 | | Position of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#26.3) relative to |
| 41918 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 41919 | | Matrix rotation and translation |
| 41920 | | -0.25085273 0.19345219 -0.94849836 329.72015556 |
| 41921 | | 0.71028680 0.70249976 -0.04457284 309.42731387 |
| 41922 | | 0.65769717 -0.68488709 -0.31363052 214.53068781 |
| 41923 | | Axis -0.35480140 -0.89000116 0.28638070 |
| 41924 | | Axis point -6.39085838 0.00000000 232.25846266 |
| 41925 | | Rotation angle (degrees) 115.53051522 |
| 41926 | | Shift along axis -330.93839267 |
| 41927 | | |
| 41928 | | |
| 41929 | | > hide #26.3 models |
| 41930 | | |
| 41931 | | > show #26.3 models |
| 41932 | | |
| 41933 | | > hide #!31 models |
| 41934 | | |
| 41935 | | > hide #39 models |
| 41936 | | |
| 41937 | | > hide #!30 models |
| 41938 | | |
| 41939 | | > show #!30 models |
| 41940 | | |
| 41941 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 41942 | | > dataset/Chimera sessions/20240406_leaf_fitting_v23.cxs" |
| 41943 | | |
| 41944 | | > show #!1 models |
| 41945 | | |
| 41946 | | > hide #!1 models |
| 41947 | | |
| 41948 | | > show #!1 models |
| 41949 | | |
| 41950 | | > hide #!1 models |
| 41951 | | |
| 41952 | | > fitmap #1 inMap #34 |
| 41953 | | |
| 41954 | | Fit map postprocess_20231221.mrc in map relion_locres_filtered_20240326_GT.mrc |
| 41955 | | using 18952 points |
| 41956 | | correlation = 0.8013, correlation about mean = 0.3883, overlap = 1.793 |
| 41957 | | steps = 48, shift = 0.0672, angle = 0.0779 degrees |
| 41958 | | |
| 41959 | | Position of postprocess_20231221.mrc (#1) relative to |
| 41960 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 41961 | | Matrix rotation and translation |
| 41962 | | 0.99987401 0.01319926 -0.00881724 48.68415658 |
| 41963 | | -0.01316607 0.99990606 0.00381232 37.99834917 |
| 41964 | | 0.00886674 -0.00369575 0.99995386 34.88480185 |
| 41965 | | Axis -0.23015011 -0.54207991 -0.80819571 |
| 41966 | | Axis point 434.69758186 -2638.11488500 0.00000000 |
| 41967 | | Rotation angle (degrees) 0.93460613 |
| 41968 | | Shift along axis -59.99655265 |
| 41969 | | |
| 41970 | | |
| 41971 | | > fitmap #2 inMap #34 |
| 41972 | | |
| 41973 | | Fit map emdb 3720 in map relion_locres_filtered_20240326_GT.mrc using 38639 |
| 41974 | | points |
| 41975 | | correlation = 0.729, correlation about mean = 0.1842, overlap = 101.9 |
| 41976 | | steps = 84, shift = 2.04, angle = 1.26 degrees |
| 41977 | | |
| 41978 | | Position of emdb 3720 (#2) relative to relion_locres_filtered_20240326_GT.mrc |
| 41979 | | (#34) coordinates: |
| 41980 | | Matrix rotation and translation |
| 41981 | | -0.53788299 0.84160172 -0.04887165 217.95859619 |
| 41982 | | -0.84291583 -0.53782153 0.01552156 404.43379129 |
| 41983 | | -0.01322125 0.04954347 0.99868446 144.98895511 |
| 41984 | | Axis 0.02018819 -0.02115452 -0.99957237 |
| 41985 | | Axis point 220.37802412 140.14623835 0.00000000 |
| 41986 | | Rotation angle (degrees) 122.58226757 |
| 41987 | | Shift along axis -149.08236462 |
| 41988 | | |
| 41989 | | |
| 41990 | | > show #3 models |
| 41991 | | |
| 41992 | | > hide #!30 models |
| 41993 | | |
| 41994 | | > fitmap #3 inMap #34 |
| 41995 | | |
| 41996 | | Fit molecule CopA_F8WHL2.pdb (#3) to map |
| 41997 | | relion_locres_filtered_20240326_GT.mrc (#34) using 9810 atoms |
| 41998 | | average map value = 0.005549, steps = 104 |
| 41999 | | shifted from previous position = 0.0315 |
| 42000 | | rotated from previous position = 0.02 degrees |
| 42001 | | atoms outside contour = 6054, contour level = 0.0064458 |
| 42002 | | |
| 42003 | | Position of CopA_F8WHL2.pdb (#3) relative to |
| 42004 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 42005 | | Matrix rotation and translation |
| 42006 | | 0.90931116 0.39282847 0.13725523 209.68522691 |
| 42007 | | -0.21900068 0.73225360 -0.64485917 282.21469801 |
| 42008 | | -0.35382468 0.55631866 0.75187607 275.94393018 |
| 42009 | | Axis 0.83724120 0.34229097 -0.42645523 |
| 42010 | | Axis point 0.00000000 -384.59576759 515.32504904 |
| 42011 | | Rotation angle (degrees) 45.83552825 |
| 42012 | | Shift along axis 154.47892206 |
| 42013 | | |
| 42014 | | |
| 42015 | | > hide #!34 models |
| 42016 | | |
| 42017 | | > hide #27.1 models |
| 42018 | | |
| 42019 | | > hide #27.2 models |
| 42020 | | |
| 42021 | | > show #!34 models |
| 42022 | | |
| 42023 | | > ui mousemode right select |
| 42024 | | |
| 42025 | | Drag select of 132 residues |
| 42026 | | |
| 42027 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 42028 | | > dataset/Chimera sessions/20240406_leaf_fitting_v24.cxs" |
| 42029 | | |
| 42030 | | > delete sel |
| 42031 | | |
| 42032 | | Drag select of 19 residues, 2 pseudobonds |
| 42033 | | |
| 42034 | | > select up |
| 42035 | | |
| 42036 | | 231 atoms, 234 bonds, 2 pseudobonds, 31 residues, 2 models selected |
| 42037 | | |
| 42038 | | > select up |
| 42039 | | |
| 42040 | | 456 atoms, 465 bonds, 2 pseudobonds, 59 residues, 2 models selected |
| 42041 | | |
| 42042 | | > select up |
| 42043 | | |
| 42044 | | 8735 atoms, 8933 bonds, 2 pseudobonds, 1101 residues, 2 models selected |
| 42045 | | |
| 42046 | | > select down |
| 42047 | | |
| 42048 | | 456 atoms, 465 bonds, 2 pseudobonds, 59 residues, 2 models selected |
| 42049 | | |
| 42050 | | > delete sel |
| 42051 | | |
| 42052 | | Drag select of 56 residues, 2 pseudobonds |
| 42053 | | |
| 42054 | | > delete sel |
| 42055 | | |
| 42056 | | Drag select of 40 residues, 3 pseudobonds |
| 42057 | | |
| 42058 | | > select up |
| 42059 | | |
| 42060 | | 1059 atoms, 1079 bonds, 3 pseudobonds, 142 residues, 2 models selected |
| 42061 | | |
| 42062 | | > delete sel |
| 42063 | | |
| 42064 | | Drag select of 4 residues, 1 pseudobonds |
| 42065 | | |
| 42066 | | > select up |
| 42067 | | |
| 42068 | | 67 atoms, 69 bonds, 1 pseudobond, 8 residues, 2 models selected |
| 42069 | | |
| 42070 | | > select up |
| 42071 | | |
| 42072 | | 84 atoms, 86 bonds, 1 pseudobond, 11 residues, 2 models selected |
| 42073 | | |
| 42074 | | > delete sel |
| 42075 | | |
| 42076 | | > select clear |
| 42077 | | |
| 42078 | | Drag select of 1 pseudobonds, 34 relion_locres_filtered_20240326_GT.mrc |
| 42079 | | |
| 42080 | | > select clear |
| 42081 | | |
| 42082 | | [Repeated 1 time(s)] |
| 42083 | | |
| 42084 | | > hide #!34 models |
| 42085 | | |
| 42086 | | > hide #!35 models |
| 42087 | | |
| 42088 | | > hide #!36 models |
| 42089 | | |
| 42090 | | > fitmap #3 inMap #34 |
| 42091 | | |
| 42092 | | Fit molecule CopA_F8WHL2.pdb (#3) to map |
| 42093 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6692 atoms |
| 42094 | | average map value = 0.008462, steps = 48 |
| 42095 | | shifted from previous position = 0.0933 |
| 42096 | | rotated from previous position = 0.112 degrees |
| 42097 | | atoms outside contour = 2966, contour level = 0.0064458 |
| 42098 | | |
| 42099 | | Position of CopA_F8WHL2.pdb (#3) relative to |
| 42100 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 42101 | | Matrix rotation and translation |
| 42102 | | 0.90891413 0.39398824 0.13655898 209.66442425 |
| 42103 | | -0.22074322 0.73246747 -0.64402160 282.24312646 |
| 42104 | | -0.35376194 0.55521587 0.75272027 276.03816129 |
| 42105 | | Axis 0.83626314 0.34191503 -0.42867011 |
| 42106 | | Axis point 0.00000000 -385.48459251 516.88628298 |
| 42107 | | Rotation angle (degrees) 45.80912282 |
| 42108 | | Shift along axis 153.50848796 |
| 42109 | | |
| 42110 | | |
| 42111 | | > fitmap #3 inMap #34 |
| 42112 | | |
| 42113 | | Fit molecule CopA_F8WHL2.pdb (#3) to map |
| 42114 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6692 atoms |
| 42115 | | average map value = 0.008462, steps = 40 |
| 42116 | | shifted from previous position = 0.0321 |
| 42117 | | rotated from previous position = 0.0123 degrees |
| 42118 | | atoms outside contour = 2960, contour level = 0.0064458 |
| 42119 | | |
| 42120 | | Position of CopA_F8WHL2.pdb (#3) relative to |
| 42121 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 42122 | | Matrix rotation and translation |
| 42123 | | 0.90889368 0.39409870 0.13637625 209.68451466 |
| 42124 | | -0.22093480 0.73239839 -0.64403447 282.25152854 |
| 42125 | | -0.35369490 0.55522860 0.75274239 276.05973913 |
| 42126 | | Axis 0.83624278 0.34172524 -0.42886114 |
| 42127 | | Axis point 0.00000000 -385.45306501 517.01562421 |
| 42128 | | Rotation angle (degrees) 45.81181650 |
| 42129 | | Shift along axis 153.40833872 |
| 42130 | | |
| 42131 | | Drag select of 233 residues, 1 pseudobonds |
| 42132 | | Drag select of 231 residues, 1 pseudobonds |
| 42133 | | |
| 42134 | | > show #!34 models |
| 42135 | | |
| 42136 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 42137 | | |
| 42138 | | Fit molecule CopA_F8WHL2.pdb (#3) to map |
| 42139 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1842 atoms |
| 42140 | | average map value = 0.008823, steps = 80 |
| 42141 | | shifted from previous position = 0.687 |
| 42142 | | rotated from previous position = 3.7 degrees |
| 42143 | | atoms outside contour = 847, contour level = 0.0064458 |
| 42144 | | |
| 42145 | | |
| 42146 | | > fitmap #3 inMap #34 |
| 42147 | | |
| 42148 | | Fit molecule CopA_F8WHL2.pdb (#3) to map |
| 42149 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6692 atoms |
| 42150 | | average map value = 0.008573, steps = 60 |
| 42151 | | shifted from previous position = 0.356 |
| 42152 | | rotated from previous position = 0.186 degrees |
| 42153 | | atoms outside contour = 2928, contour level = 0.0064458 |
| 42154 | | |
| 42155 | | Position of CopA_F8WHL2.pdb (#3) relative to |
| 42156 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 42157 | | Matrix rotation and translation |
| 42158 | | 0.90782578 0.39663908 0.13612418 209.93249872 |
| 42159 | | -0.22358555 0.73244000 -0.64307164 282.47841584 |
| 42160 | | -0.35477013 0.55336161 0.75361068 275.87777154 |
| 42161 | | Axis 0.83418023 0.34226258 -0.43243459 |
| 42162 | | Axis point 0.00000000 -386.65044437 518.96879030 |
| 42163 | | Rotation angle (degrees) 45.81812855 |
| 42164 | | Shift along axis 152.50423879 |
| 42165 | | |
| 42166 | | |
| 42167 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 42168 | | |
| 42169 | | Fit molecule CopA_F8WHL2.pdb (#3) to map |
| 42170 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1842 atoms |
| 42171 | | average map value = 0.008825, steps = 60 |
| 42172 | | shifted from previous position = 0.412 |
| 42173 | | rotated from previous position = 0.174 degrees |
| 42174 | | atoms outside contour = 848, contour level = 0.0064458 |
| 42175 | | |
| 42176 | | |
| 42177 | | > fitmap #3 inMap #34 |
| 42178 | | |
| 42179 | | Fit molecule CopA_F8WHL2.pdb (#3) to map |
| 42180 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6692 atoms |
| 42181 | | average map value = 0.00859, steps = 40 |
| 42182 | | shifted from previous position = 0.164 |
| 42183 | | rotated from previous position = 0.148 degrees |
| 42184 | | atoms outside contour = 2935, contour level = 0.0064458 |
| 42185 | | |
| 42186 | | Position of CopA_F8WHL2.pdb (#3) relative to |
| 42187 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 42188 | | Matrix rotation and translation |
| 42189 | | 0.90741514 0.39774698 0.13562849 210.01402558 |
| 42190 | | -0.22549080 0.73319380 -0.64154558 282.65440494 |
| 42191 | | -0.35461479 0.55156520 0.75499945 275.86129278 |
| 42192 | | Axis 0.83284228 0.34221075 -0.43504659 |
| 42193 | | Axis point 0.00000000 -388.23814513 521.16574384 |
| 42194 | | Rotation angle (degrees) 45.74890070 |
| 42195 | | Shift along axis 151.62342015 |
| 42196 | | |
| 42197 | | |
| 42198 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 42199 | | |
| 42200 | | Fit molecule CopA_F8WHL2.pdb (#3) to map |
| 42201 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1842 atoms |
| 42202 | | average map value = 0.008822, steps = 48 |
| 42203 | | shifted from previous position = 0.235 |
| 42204 | | rotated from previous position = 0.144 degrees |
| 42205 | | atoms outside contour = 846, contour level = 0.0064458 |
| 42206 | | |
| 42207 | | |
| 42208 | | > fitmap #3 inMap #34 |
| 42209 | | |
| 42210 | | Fit molecule CopA_F8WHL2.pdb (#3) to map |
| 42211 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6692 atoms |
| 42212 | | average map value = 0.008594, steps = 44 |
| 42213 | | shifted from previous position = 0.0769 |
| 42214 | | rotated from previous position = 0.124 degrees |
| 42215 | | atoms outside contour = 2940, contour level = 0.0064458 |
| 42216 | | |
| 42217 | | Position of CopA_F8WHL2.pdb (#3) relative to |
| 42218 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 42219 | | Matrix rotation and translation |
| 42220 | | 0.90696334 0.39875882 0.13567938 210.04607668 |
| 42221 | | -0.22688465 0.73389108 -0.64025559 282.75835838 |
| 42222 | | -0.35488145 0.54990477 0.75608457 275.85910636 |
| 42223 | | Axis 0.83153588 0.34274283 -0.43712177 |
| 42224 | | Axis point 0.00000000 -389.77558330 522.80729754 |
| 42225 | | Rotation angle (degrees) 45.69565954 |
| 42226 | | Shift along axis 150.99022935 |
| 42227 | | |
| 42228 | | |
| 42229 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 42230 | | |
| 42231 | | Fit molecule CopA_F8WHL2.pdb (#3) to map |
| 42232 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1842 atoms |
| 42233 | | average map value = 0.008823, steps = 48 |
| 42234 | | shifted from previous position = 0.177 |
| 42235 | | rotated from previous position = 0.129 degrees |
| 42236 | | atoms outside contour = 846, contour level = 0.0064458 |
| 42237 | | |
| 42238 | | |
| 42239 | | > fitmap #3 inMap #34 |
| 42240 | | |
| 42241 | | Fit molecule CopA_F8WHL2.pdb (#3) to map |
| 42242 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6692 atoms |
| 42243 | | average map value = 0.008597, steps = 44 |
| 42244 | | shifted from previous position = 0.0361 |
| 42245 | | rotated from previous position = 0.0972 degrees |
| 42246 | | atoms outside contour = 2946, contour level = 0.0064458 |
| 42247 | | |
| 42248 | | Position of CopA_F8WHL2.pdb (#3) relative to |
| 42249 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 42250 | | Matrix rotation and translation |
| 42251 | | 0.90682211 0.39903561 0.13580955 210.04444692 |
| 42252 | | -0.22761279 0.73474399 -0.63901774 282.82199351 |
| 42253 | | -0.35477609 0.54856343 0.75710770 275.87776428 |
| 42254 | | Axis 0.83071778 0.34316661 -0.43834306 |
| 42255 | | Axis point 0.00000000 -391.20321850 524.09410081 |
| 42256 | | Rotation angle (degrees) 45.62617198 |
| 42257 | | Shift along axis 150.61361762 |
| 42258 | | |
| 42259 | | |
| 42260 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 42261 | | |
| 42262 | | Fit molecule CopA_F8WHL2.pdb (#3) to map |
| 42263 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1842 atoms |
| 42264 | | average map value = 0.008824, steps = 44 |
| 42265 | | shifted from previous position = 0.123 |
| 42266 | | rotated from previous position = 0.131 degrees |
| 42267 | | atoms outside contour = 849, contour level = 0.0064458 |
| 42268 | | |
| 42269 | | |
| 42270 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 42271 | | |
| 42272 | | Fit molecule CopA_F8WHL2.pdb (#3) to map |
| 42273 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1842 atoms |
| 42274 | | average map value = 0.008824, steps = 80 |
| 42275 | | shifted from previous position = 0.00593 |
| 42276 | | rotated from previous position = 0.042 degrees |
| 42277 | | atoms outside contour = 847, contour level = 0.0064458 |
| 42278 | | |
| 42279 | | |
| 42280 | | > fitmap #3 inMap #34 |
| 42281 | | |
| 42282 | | Fit molecule CopA_F8WHL2.pdb (#3) to map |
| 42283 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6692 atoms |
| 42284 | | average map value = 0.008598, steps = 48 |
| 42285 | | shifted from previous position = 0.0603 |
| 42286 | | rotated from previous position = 0.0823 degrees |
| 42287 | | atoms outside contour = 2941, contour level = 0.0064458 |
| 42288 | | |
| 42289 | | Position of CopA_F8WHL2.pdb (#3) relative to |
| 42290 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 42291 | | Matrix rotation and translation |
| 42292 | | 0.90688108 0.39906542 0.13532731 210.04151195 |
| 42293 | | -0.22837904 0.73535901 -0.63803615 282.90230477 |
| 42294 | | -0.35413232 0.54771699 0.75802136 275.90663773 |
| 42295 | | Axis 0.83034228 0.34275181 -0.43937785 |
| 42296 | | Axis point 0.00000000 -392.08196933 525.36366842 |
| 42297 | | Rotation angle (degrees) 45.56250642 |
| 42298 | | Shift along axis 150.14435832 |
| 42299 | | |
| 42300 | | |
| 42301 | | > fitmap #3 inMap #34 |
| 42302 | | |
| 42303 | | Fit molecule CopA_F8WHL2.pdb (#3) to map |
| 42304 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6692 atoms |
| 42305 | | average map value = 0.008598, steps = 44 |
| 42306 | | shifted from previous position = 0.0329 |
| 42307 | | rotated from previous position = 0.0136 degrees |
| 42308 | | atoms outside contour = 2938, contour level = 0.0064458 |
| 42309 | | |
| 42310 | | Position of CopA_F8WHL2.pdb (#3) relative to |
| 42311 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 42312 | | Matrix rotation and translation |
| 42313 | | 0.90688255 0.39899299 0.13553090 210.02036491 |
| 42314 | | -0.22817718 0.73537741 -0.63808716 282.88222730 |
| 42315 | | -0.35425867 0.54774505 0.75794204 275.89424066 |
| 42316 | | Axis 0.83036376 0.34296885 -0.43916785 |
| 42317 | | Axis point 0.00000000 -392.07575462 525.16889116 |
| 42318 | | Rotation angle (degrees) 45.56489160 |
| 42319 | | Shift along axis 150.24921009 |
| 42320 | | |
| 42321 | | |
| 42322 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 42323 | | |
| 42324 | | Fit molecule CopA_F8WHL2.pdb (#3) to map |
| 42325 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1842 atoms |
| 42326 | | average map value = 0.008823, steps = 48 |
| 42327 | | shifted from previous position = 0.0934 |
| 42328 | | rotated from previous position = 0.119 degrees |
| 42329 | | atoms outside contour = 848, contour level = 0.0064458 |
| 42330 | | |
| 42331 | | |
| 42332 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 42333 | | |
| 42334 | | Fit molecule CopA_F8WHL2.pdb (#3) to map |
| 42335 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1842 atoms |
| 42336 | | average map value = 0.008822, steps = 56 |
| 42337 | | shifted from previous position = 0.0149 |
| 42338 | | rotated from previous position = 0.0989 degrees |
| 42339 | | atoms outside contour = 847, contour level = 0.0064458 |
| 42340 | | |
| 42341 | | |
| 42342 | | > fitmap #3 inMap #34 |
| 42343 | | |
| 42344 | | Fit molecule CopA_F8WHL2.pdb (#3) to map |
| 42345 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6692 atoms |
| 42346 | | average map value = 0.008599, steps = 40 |
| 42347 | | shifted from previous position = 0.0254 |
| 42348 | | rotated from previous position = 0.0438 degrees |
| 42349 | | atoms outside contour = 2940, contour level = 0.0064458 |
| 42350 | | |
| 42351 | | Position of CopA_F8WHL2.pdb (#3) relative to |
| 42352 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 42353 | | Matrix rotation and translation |
| 42354 | | 0.90676753 0.39927286 0.13547625 210.02601110 |
| 42355 | | -0.22866700 0.73565368 -0.63759317 282.91435028 |
| 42356 | | -0.35423725 0.54716983 0.75836740 275.91029921 |
| 42357 | | Axis 0.82994946 0.34305381 -0.43988405 |
| 42358 | | Axis point 0.00000000 -392.63867419 525.80518864 |
| 42359 | | Rotation angle (degrees) 45.54135137 |
| 42360 | | Shift along axis 149.99727922 |
| 42361 | | |
| 42362 | | |
| 42363 | | > fitmap #3 inMap #34 |
| 42364 | | |
| 42365 | | Fit molecule CopA_F8WHL2.pdb (#3) to map |
| 42366 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6692 atoms |
| 42367 | | average map value = 0.008599, steps = 44 |
| 42368 | | shifted from previous position = 0.00445 |
| 42369 | | rotated from previous position = 0.00461 degrees |
| 42370 | | atoms outside contour = 2938, contour level = 0.0064458 |
| 42371 | | |
| 42372 | | Position of CopA_F8WHL2.pdb (#3) relative to |
| 42373 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 42374 | | Matrix rotation and translation |
| 42375 | | 0.90673879 0.39932278 0.13552148 210.02748872 |
| 42376 | | -0.22869189 0.73566610 -0.63756992 282.91049144 |
| 42377 | | -0.35429475 0.54711671 0.75837887 275.91053727 |
| 42378 | | Axis 0.82989319 0.34312462 -0.43993499 |
| 42379 | | Axis point 0.00000000 -392.69123605 525.81905039 |
| 42380 | | Rotation angle (degrees) 45.54154641 |
| 42381 | | Shift along axis 149.99123777 |
| 42382 | | |
| 42383 | | |
| 42384 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 42385 | | |
| 42386 | | Fit molecule CopA_F8WHL2.pdb (#3) to map |
| 42387 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1842 atoms |
| 42388 | | average map value = 0.008821, steps = 48 |
| 42389 | | shifted from previous position = 0.0616 |
| 42390 | | rotated from previous position = 0.0475 degrees |
| 42391 | | atoms outside contour = 848, contour level = 0.0064458 |
| 42392 | | |
| 42393 | | |
| 42394 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 42395 | | |
| 42396 | | Fit molecule CopA_F8WHL2.pdb (#3) to map |
| 42397 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1842 atoms |
| 42398 | | average map value = 0.008823, steps = 44 |
| 42399 | | shifted from previous position = 0.0268 |
| 42400 | | rotated from previous position = 0.0406 degrees |
| 42401 | | atoms outside contour = 847, contour level = 0.0064458 |
| 42402 | | |
| 42403 | | |
| 42404 | | > fitmap #3 inMap #34 |
| 42405 | | |
| 42406 | | Fit molecule CopA_F8WHL2.pdb (#3) to map |
| 42407 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6692 atoms |
| 42408 | | average map value = 0.008599, steps = 40 |
| 42409 | | shifted from previous position = 0.034 |
| 42410 | | rotated from previous position = 0.0427 degrees |
| 42411 | | atoms outside contour = 2943, contour level = 0.0064458 |
| 42412 | | |
| 42413 | | Position of CopA_F8WHL2.pdb (#3) relative to |
| 42414 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 42415 | | Matrix rotation and translation |
| 42416 | | 0.90665202 0.39949242 0.13560201 210.04475273 |
| 42417 | | -0.22902990 0.73601982 -0.63704012 282.95219416 |
| 42418 | | -0.35429846 0.54651680 0.75880957 275.92432789 |
| 42419 | | Axis 0.82949980 0.34334837 -0.44050196 |
| 42420 | | Axis point 0.00000000 -393.33709858 526.40128539 |
| 42421 | | Rotation angle (degrees) 45.51353794 |
| 42422 | | Shift along axis 149.83804876 |
| 42423 | | |
| 42424 | | |
| 42425 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 42426 | | |
| 42427 | | Fit molecule CopA_F8WHL2.pdb (#3) to map |
| 42428 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1842 atoms |
| 42429 | | average map value = 0.008823, steps = 48 |
| 42430 | | shifted from previous position = 0.0706 |
| 42431 | | rotated from previous position = 0.0499 degrees |
| 42432 | | atoms outside contour = 846, contour level = 0.0064458 |
| 42433 | | |
| 42434 | | |
| 42435 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 42436 | | |
| 42437 | | Fit molecule CopA_F8WHL2.pdb (#3) to map |
| 42438 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1842 atoms |
| 42439 | | average map value = 0.008824, steps = 60 |
| 42440 | | shifted from previous position = 0.0283 |
| 42441 | | rotated from previous position = 0.0283 degrees |
| 42442 | | atoms outside contour = 849, contour level = 0.0064458 |
| 42443 | | |
| 42444 | | |
| 42445 | | > fitmap #3 inMap #34 |
| 42446 | | |
| 42447 | | Fit molecule CopA_F8WHL2.pdb (#3) to map |
| 42448 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6692 atoms |
| 42449 | | average map value = 0.0086, steps = 44 |
| 42450 | | shifted from previous position = 0.0265 |
| 42451 | | rotated from previous position = 0.0385 degrees |
| 42452 | | atoms outside contour = 2936, contour level = 0.0064458 |
| 42453 | | |
| 42454 | | Position of CopA_F8WHL2.pdb (#3) relative to |
| 42455 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 42456 | | Matrix rotation and translation |
| 42457 | | 0.90667083 0.39942373 0.13567862 210.02682489 |
| 42458 | | -0.22917090 0.73642362 -0.63652254 282.97962825 |
| 42459 | | -0.35415915 0.54602283 0.75923010 275.91354666 |
| 42460 | | Axis 0.82927246 0.34350392 -0.44080863 |
| 42461 | | Axis point 0.00000000 -393.88759641 526.86229212 |
| 42462 | | Rotation angle (degrees) 45.47967159 |
| 42463 | | Shift along axis 149.74899838 |
| 42464 | | |
| 42465 | | |
| 42466 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 42467 | | |
| 42468 | | Fit molecule CopA_F8WHL2.pdb (#3) to map |
| 42469 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1842 atoms |
| 42470 | | average map value = 0.008822, steps = 48 |
| 42471 | | shifted from previous position = 0.0331 |
| 42472 | | rotated from previous position = 0.0295 degrees |
| 42473 | | atoms outside contour = 843, contour level = 0.0064458 |
| 42474 | | |
| 42475 | | |
| 42476 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 42477 | | |
| 42478 | | Fit molecule CopA_F8WHL2.pdb (#3) to map |
| 42479 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1842 atoms |
| 42480 | | average map value = 0.008824, steps = 48 |
| 42481 | | shifted from previous position = 0.0413 |
| 42482 | | rotated from previous position = 0.0398 degrees |
| 42483 | | atoms outside contour = 847, contour level = 0.0064458 |
| 42484 | | |
| 42485 | | |
| 42486 | | > hide #!3 models |
| 42487 | | |
| 42488 | | > show #!3 models |
| 42489 | | |
| 42490 | | > show #7 models |
| 42491 | | |
| 42492 | | > fitmap #7 inMap #34 |
| 42493 | | |
| 42494 | | Fit molecule CopBprime_O55029.pdb (#7) to map |
| 42495 | | relion_locres_filtered_20240326_GT.mrc (#34) using 7214 atoms |
| 42496 | | average map value = 0.008398, steps = 44 |
| 42497 | | shifted from previous position = 0.0137 |
| 42498 | | rotated from previous position = 0.0314 degrees |
| 42499 | | atoms outside contour = 3252, contour level = 0.0064458 |
| 42500 | | |
| 42501 | | Position of CopBprime_O55029.pdb (#7) relative to |
| 42502 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 42503 | | Matrix rotation and translation |
| 42504 | | -0.13434959 -0.22741189 -0.96448640 237.13674547 |
| 42505 | | -0.00067690 -0.97328915 0.22958174 213.64254218 |
| 42506 | | -0.99093376 0.03149708 0.13060707 275.37371608 |
| 42507 | | Axis -0.65540036 0.08750608 0.75019535 |
| 42508 | | Axis point 228.34566768 105.09095173 0.00000000 |
| 42509 | | Rotation angle (degrees) 171.30831886 |
| 42510 | | Shift along axis 69.85959355 |
| 42511 | | |
| 42512 | | |
| 42513 | | > fitmap #7 inMap #34 |
| 42514 | | |
| 42515 | | Fit molecule CopBprime_O55029.pdb (#7) to map |
| 42516 | | relion_locres_filtered_20240326_GT.mrc (#34) using 7214 atoms |
| 42517 | | average map value = 0.008399, steps = 40 |
| 42518 | | shifted from previous position = 0.00753 |
| 42519 | | rotated from previous position = 0.021 degrees |
| 42520 | | atoms outside contour = 3254, contour level = 0.0064458 |
| 42521 | | |
| 42522 | | Position of CopBprime_O55029.pdb (#7) relative to |
| 42523 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 42524 | | Matrix rotation and translation |
| 42525 | | -0.13415323 -0.22756384 -0.96447789 237.13727833 |
| 42526 | | -0.00038925 -0.97326354 0.22969092 213.64331424 |
| 42527 | | -0.99096052 0.03118920 0.13047787 275.38173050 |
| 42528 | | Axis -0.65546554 0.08744736 0.75014524 |
| 42529 | | Axis point 228.34699349 105.12967021 0.00000000 |
| 42530 | | Rotation angle (degrees) 171.29074998 |
| 42531 | | Shift along axis 69.82352552 |
| 42532 | | |
| 42533 | | |
| 42534 | | > hide #!3 models |
| 42535 | | |
| 42536 | | > select add #3 |
| 42537 | | |
| 42538 | | 6692 atoms, 6847 bonds, 1 pseudobond, 833 residues, 2 models selected |
| 42539 | | |
| 42540 | | > select subtract #3 |
| 42541 | | |
| 42542 | | Nothing selected |
| 42543 | | |
| 42544 | | > show #!3 models |
| 42545 | | |
| 42546 | | > hide #!34 models |
| 42547 | | |
| 42548 | | > hide #!3 models |
| 42549 | | |
| 42550 | | Drag select of 14 residues |
| 42551 | | |
| 42552 | | > select up |
| 42553 | | |
| 42554 | | 519 atoms, 525 bonds, 67 residues, 1 model selected |
| 42555 | | |
| 42556 | | > show #!34 models |
| 42557 | | |
| 42558 | | > hide #!34 models |
| 42559 | | |
| 42560 | | > delete sel |
| 42561 | | |
| 42562 | | > show #!34 models |
| 42563 | | |
| 42564 | | > hide #!34 models |
| 42565 | | |
| 42566 | | > show #27.1 models |
| 42567 | | |
| 42568 | | > hide #27.1 models |
| 42569 | | |
| 42570 | | > hide #7 models |
| 42571 | | |
| 42572 | | > show #!34 models |
| 42573 | | |
| 42574 | | > show #4 models |
| 42575 | | |
| 42576 | | > hide #!34 models |
| 42577 | | |
| 42578 | | > hide #24 models |
| 42579 | | |
| 42580 | | > hide #26.3 models |
| 42581 | | |
| 42582 | | > show #26.3 models |
| 42583 | | |
| 42584 | | > color #26.3 #fffb00ff |
| 42585 | | |
| 42586 | | > color #28 #fffb00ff |
| 42587 | | |
| 42588 | | > hide #28 models |
| 42589 | | |
| 42590 | | > hide #26.3 models |
| 42591 | | |
| 42592 | | > hide #!26.2 models |
| 42593 | | |
| 42594 | | > hide #!26.1 models |
| 42595 | | |
| 42596 | | > hide #!29 models |
| 42597 | | |
| 42598 | | > hide #!37 models |
| 42599 | | |
| 42600 | | > hide #38 models |
| 42601 | | |
| 42602 | | > show #!34 models |
| 42603 | | |
| 42604 | | > hide #!34 models |
| 42605 | | |
| 42606 | | Drag select of 24 residues |
| 42607 | | |
| 42608 | | > select up |
| 42609 | | |
| 42610 | | 290 atoms, 293 bonds, 39 residues, 1 model selected |
| 42611 | | |
| 42612 | | > delete sel |
| 42613 | | |
| 42614 | | > show #!34 models |
| 42615 | | |
| 42616 | | > fitmap #7 inMap #34 |
| 42617 | | |
| 42618 | | Fit molecule CopBprime_O55029.pdb (#7) to map |
| 42619 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6695 atoms |
| 42620 | | average map value = 0.009017, steps = 60 |
| 42621 | | shifted from previous position = 0.123 |
| 42622 | | rotated from previous position = 0.437 degrees |
| 42623 | | atoms outside contour = 2761, contour level = 0.0064458 |
| 42624 | | |
| 42625 | | Position of CopBprime_O55029.pdb (#7) relative to |
| 42626 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 42627 | | Matrix rotation and translation |
| 42628 | | -0.13064107 -0.23172439 -0.96396925 237.19381792 |
| 42629 | | 0.00542688 -0.97245471 0.23302870 213.64056466 |
| 42630 | | -0.99141488 0.02521178 0.12830006 275.50575861 |
| 42631 | | Axis -0.65657806 0.08671188 0.74925716 |
| 42632 | | Axis point 228.27663105 105.89736307 0.00000000 |
| 42633 | | Rotation angle (degrees) 170.89422511 |
| 42634 | | Shift along axis 69.21358119 |
| 42635 | | |
| 42636 | | |
| 42637 | | > fitmap #7 inMap #34 |
| 42638 | | |
| 42639 | | Fit molecule CopBprime_O55029.pdb (#7) to map |
| 42640 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6695 atoms |
| 42641 | | average map value = 0.009016, steps = 44 |
| 42642 | | shifted from previous position = 0.0356 |
| 42643 | | rotated from previous position = 0.0263 degrees |
| 42644 | | atoms outside contour = 2757, contour level = 0.0064458 |
| 42645 | | |
| 42646 | | Position of CopBprime_O55029.pdb (#7) relative to |
| 42647 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 42648 | | Matrix rotation and translation |
| 42649 | | -0.13091454 -0.23172608 -0.96393174 237.20189942 |
| 42650 | | 0.00506406 -0.97244331 0.23308446 213.62990233 |
| 42651 | | -0.99138072 0.02563274 0.12848044 275.47151700 |
| 42652 | | Axis -0.65648217 0.08686245 0.74932374 |
| 42653 | | Axis point 228.25761396 105.84342594 0.00000000 |
| 42654 | | Rotation angle (degrees) 170.90902340 |
| 42655 | | Shift along axis 69.25494684 |
| 42656 | | |
| 42657 | | |
| 42658 | | > hide #!34 models |
| 42659 | | |
| 42660 | | Drag select of 150 residues |
| 42661 | | |
| 42662 | | > select up |
| 42663 | | |
| 42664 | | 1453 atoms, 1469 bonds, 190 residues, 1 model selected |
| 42665 | | |
| 42666 | | > select up |
| 42667 | | |
| 42668 | | 3240 atoms, 3289 bonds, 418 residues, 1 model selected |
| 42669 | | |
| 42670 | | > show #!34 models |
| 42671 | | |
| 42672 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 42673 | | |
| 42674 | | Fit molecule CopB_Q9JIF7.pdb (#4) to map |
| 42675 | | relion_locres_filtered_20240326_GT.mrc (#34) using 3240 atoms |
| 42676 | | average map value = 0.008342, steps = 64 |
| 42677 | | shifted from previous position = 5.22 |
| 42678 | | rotated from previous position = 5.34 degrees |
| 42679 | | atoms outside contour = 1418, contour level = 0.0064458 |
| 42680 | | |
| 42681 | | |
| 42682 | | > fitmap #7 inMap #34 |
| 42683 | | |
| 42684 | | Fit molecule CopBprime_O55029.pdb (#7) to map |
| 42685 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6695 atoms |
| 42686 | | average map value = 0.009016, steps = 44 |
| 42687 | | shifted from previous position = 0.0137 |
| 42688 | | rotated from previous position = 0.0449 degrees |
| 42689 | | atoms outside contour = 2763, contour level = 0.0064458 |
| 42690 | | |
| 42691 | | Position of CopBprime_O55029.pdb (#7) relative to |
| 42692 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 42693 | | Matrix rotation and translation |
| 42694 | | -0.13036235 -0.23227560 -0.96387432 237.21373396 |
| 42695 | | 0.00520236 -0.97231728 0.23360658 213.62030736 |
| 42696 | | -0.99145277 0.02543909 0.12796194 275.47829542 |
| 42697 | | Axis -0.65667635 0.08699781 0.74913787 |
| 42698 | | Axis point 228.29490270 105.85984525 -0.00000000 |
| 42699 | | Rotation angle (degrees) 170.88011010 |
| 42700 | | Shift along axis 69.18307299 |
| 42701 | | |
| 42702 | | |
| 42703 | | > fitmap #7 inMap #34 |
| 42704 | | |
| 42705 | | Fit molecule CopBprime_O55029.pdb (#7) to map |
| 42706 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6695 atoms |
| 42707 | | average map value = 0.009016, steps = 44 |
| 42708 | | shifted from previous position = 0.00151 |
| 42709 | | rotated from previous position = 0.00331 degrees |
| 42710 | | atoms outside contour = 2764, contour level = 0.0064458 |
| 42711 | | |
| 42712 | | Position of CopBprime_O55029.pdb (#7) relative to |
| 42713 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 42714 | | Matrix rotation and translation |
| 42715 | | -0.13036477 -0.23227317 -0.96387457 237.21452052 |
| 42716 | | 0.00514485 -0.97231638 0.23361162 213.62130287 |
| 42717 | | -0.99145275 0.02549573 0.12795081 275.47904292 |
| 42718 | | Axis -0.65667680 0.08701857 0.74913507 |
| 42719 | | Axis point 228.29894049 105.85286174 0.00000000 |
| 42720 | | Rotation angle (degrees) 170.88239700 |
| 42721 | | Shift along axis 69.18675920 |
| 42722 | | |
| 42723 | | |
| 42724 | | > fitmap #4 inMap #34 |
| 42725 | | |
| 42726 | | Fit molecule CopB_Q9JIF7.pdb (#4) to map |
| 42727 | | relion_locres_filtered_20240326_GT.mrc (#34) using 7211 atoms |
| 42728 | | average map value = 0.008817, steps = 68 |
| 42729 | | shifted from previous position = 1.01 |
| 42730 | | rotated from previous position = 1.21 degrees |
| 42731 | | atoms outside contour = 3254, contour level = 0.0064458 |
| 42732 | | |
| 42733 | | Position of CopB_Q9JIF7.pdb (#4) relative to |
| 42734 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 42735 | | Matrix rotation and translation |
| 42736 | | -0.01860980 -0.70776039 0.70620741 220.19799781 |
| 42737 | | -0.05500565 0.70598475 0.70608775 242.11894872 |
| 42738 | | -0.99831260 -0.02570525 -0.05206905 272.56837572 |
| 42739 | | Axis -0.37213564 0.86679245 0.33194264 |
| 42740 | | Axis point 258.04675243 0.00000000 -54.69162162 |
| 42741 | | Rotation angle (degrees) 100.50649879 |
| 42742 | | Shift along axis 218.40042051 |
| 42743 | | |
| 42744 | | |
| 42745 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 42746 | | |
| 42747 | | Fit molecule CopB_Q9JIF7.pdb (#4) to map |
| 42748 | | relion_locres_filtered_20240326_GT.mrc (#34) using 3240 atoms |
| 42749 | | average map value = 0.008342, steps = 64 |
| 42750 | | shifted from previous position = 1.1 |
| 42751 | | rotated from previous position = 1.22 degrees |
| 42752 | | atoms outside contour = 1420, contour level = 0.0064458 |
| 42753 | | |
| 42754 | | |
| 42755 | | > fitmap #4 inMap #34 |
| 42756 | | |
| 42757 | | Fit molecule CopB_Q9JIF7.pdb (#4) to map |
| 42758 | | relion_locres_filtered_20240326_GT.mrc (#34) using 7211 atoms |
| 42759 | | average map value = 0.008962, steps = 64 |
| 42760 | | shifted from previous position = 0.523 |
| 42761 | | rotated from previous position = 0.82 degrees |
| 42762 | | atoms outside contour = 3212, contour level = 0.0064458 |
| 42763 | | |
| 42764 | | Position of CopB_Q9JIF7.pdb (#4) relative to |
| 42765 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 42766 | | Matrix rotation and translation |
| 42767 | | -0.02017469 -0.71402417 0.69983032 220.34435012 |
| 42768 | | -0.04411501 0.69992680 0.71285086 241.61952198 |
| 42769 | | -0.99882273 -0.01649148 -0.04561999 272.54737727 |
| 42770 | | Axis -0.37093054 0.86390474 0.34070388 |
| 42771 | | Axis point 257.10995134 0.00000000 -56.58617768 |
| 42772 | | Rotation angle (degrees) 100.54070073 |
| 42773 | | Shift along axis 219.86175039 |
| 42774 | | |
| 42775 | | |
| 42776 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 42777 | | |
| 42778 | | Fit molecule CopB_Q9JIF7.pdb (#4) to map |
| 42779 | | relion_locres_filtered_20240326_GT.mrc (#34) using 3240 atoms |
| 42780 | | average map value = 0.008342, steps = 60 |
| 42781 | | shifted from previous position = 0.653 |
| 42782 | | rotated from previous position = 0.827 degrees |
| 42783 | | atoms outside contour = 1418, contour level = 0.0064458 |
| 42784 | | |
| 42785 | | |
| 42786 | | > fitmap #4 inMap #34 |
| 42787 | | |
| 42788 | | Fit molecule CopB_Q9JIF7.pdb (#4) to map |
| 42789 | | relion_locres_filtered_20240326_GT.mrc (#34) using 7211 atoms |
| 42790 | | average map value = 0.00902, steps = 84 |
| 42791 | | shifted from previous position = 0.269 |
| 42792 | | rotated from previous position = 0.578 degrees |
| 42793 | | atoms outside contour = 3184, contour level = 0.0064458 |
| 42794 | | |
| 42795 | | Position of CopB_Q9JIF7.pdb (#4) relative to |
| 42796 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 42797 | | Matrix rotation and translation |
| 42798 | | -0.02126238 -0.71809220 0.69562310 220.37093889 |
| 42799 | | -0.03610653 0.69587804 0.71725175 241.37668426 |
| 42800 | | -0.99912173 -0.00986606 -0.04072384 272.58927506 |
| 42801 | | Axis -0.36980760 0.86193669 0.34685368 |
| 42802 | | Axis point 256.39793623 0.00000000 -57.91605031 |
| 42803 | | Rotation angle (degrees) 100.54770288 |
| 42804 | | Shift along axis 221.10516606 |
| 42805 | | |
| 42806 | | |
| 42807 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 42808 | | |
| 42809 | | Fit molecule CopB_Q9JIF7.pdb (#4) to map |
| 42810 | | relion_locres_filtered_20240326_GT.mrc (#34) using 3240 atoms |
| 42811 | | average map value = 0.008342, steps = 48 |
| 42812 | | shifted from previous position = 0.379 |
| 42813 | | rotated from previous position = 0.571 degrees |
| 42814 | | atoms outside contour = 1418, contour level = 0.0064458 |
| 42815 | | |
| 42816 | | |
| 42817 | | > fitmap #4 inMap #34 |
| 42818 | | |
| 42819 | | Fit molecule CopB_Q9JIF7.pdb (#4) to map |
| 42820 | | relion_locres_filtered_20240326_GT.mrc (#34) using 7211 atoms |
| 42821 | | average map value = 0.009047, steps = 48 |
| 42822 | | shifted from previous position = 0.169 |
| 42823 | | rotated from previous position = 0.374 degrees |
| 42824 | | atoms outside contour = 3180, contour level = 0.0064458 |
| 42825 | | |
| 42826 | | Position of CopB_Q9JIF7.pdb (#4) relative to |
| 42827 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 42828 | | Matrix rotation and translation |
| 42829 | | -0.02148076 -0.72058910 0.69302952 220.35457835 |
| 42830 | | -0.03075639 0.69333767 0.71995619 241.26508197 |
| 42831 | | -0.99929606 -0.00584988 -0.03705614 272.66881653 |
| 42832 | | Axis -0.36910873 0.86063230 0.35081447 |
| 42833 | | Axis point 256.00416174 0.00000000 -58.84211617 |
| 42834 | | Rotation angle (degrees) 100.52121690 |
| 42835 | | Shift along axis 221.96189033 |
| 42836 | | |
| 42837 | | |
| 42838 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 42839 | | |
| 42840 | | Fit molecule CopB_Q9JIF7.pdb (#4) to map |
| 42841 | | relion_locres_filtered_20240326_GT.mrc (#34) using 3240 atoms |
| 42842 | | average map value = 0.008342, steps = 48 |
| 42843 | | shifted from previous position = 0.294 |
| 42844 | | rotated from previous position = 0.378 degrees |
| 42845 | | atoms outside contour = 1420, contour level = 0.0064458 |
| 42846 | | |
| 42847 | | |
| 42848 | | > fitmap #4 inMap #34 |
| 42849 | | |
| 42850 | | Fit molecule CopB_Q9JIF7.pdb (#4) to map |
| 42851 | | relion_locres_filtered_20240326_GT.mrc (#34) using 7211 atoms |
| 42852 | | average map value = 0.009066, steps = 44 |
| 42853 | | shifted from previous position = 0.136 |
| 42854 | | rotated from previous position = 0.344 degrees |
| 42855 | | atoms outside contour = 3188, contour level = 0.0064458 |
| 42856 | | |
| 42857 | | Position of CopB_Q9JIF7.pdb (#4) relative to |
| 42858 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 42859 | | Matrix rotation and translation |
| 42860 | | -0.02175555 -0.72294654 0.69056136 220.33099503 |
| 42861 | | -0.02590185 0.69090057 0.72248564 241.19819905 |
| 42862 | | -0.99942773 -0.00216875 -0.03375658 272.74170203 |
| 42863 | | Axis -0.36850260 0.85939641 0.35446247 |
| 42864 | | Axis point 255.63636665 0.00000000 -59.69647871 |
| 42865 | | Rotation angle (degrees) 100.50409379 |
| 42866 | | Shift along axis 222.76901806 |
| 42867 | | |
| 42868 | | |
| 42869 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 42870 | | |
| 42871 | | Fit molecule CopB_Q9JIF7.pdb (#4) to map |
| 42872 | | relion_locres_filtered_20240326_GT.mrc (#34) using 3240 atoms |
| 42873 | | average map value = 0.008342, steps = 40 |
| 42874 | | shifted from previous position = 0.269 |
| 42875 | | rotated from previous position = 0.307 degrees |
| 42876 | | atoms outside contour = 1416, contour level = 0.0064458 |
| 42877 | | |
| 42878 | | |
| 42879 | | > fitmap #4 inMap #34 |
| 42880 | | |
| 42881 | | Fit molecule CopB_Q9JIF7.pdb (#4) to map |
| 42882 | | relion_locres_filtered_20240326_GT.mrc (#34) using 7211 atoms |
| 42883 | | average map value = 0.00908, steps = 60 |
| 42884 | | shifted from previous position = 0.144 |
| 42885 | | rotated from previous position = 0.294 degrees |
| 42886 | | atoms outside contour = 3179, contour level = 0.0064458 |
| 42887 | | |
| 42888 | | Position of CopB_Q9JIF7.pdb (#4) relative to |
| 42889 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 42890 | | Matrix rotation and translation |
| 42891 | | -0.02187099 -0.72521931 0.68817048 220.26525308 |
| 42892 | | -0.02205057 0.68851761 0.72488432 241.14683477 |
| 42893 | | -0.99951760 0.00067939 -0.03105006 272.81387189 |
| 42894 | | Axis -0.36826682 0.85820946 0.35756967 |
| 42895 | | Axis point 255.36293942 0.00000000 -60.42643654 |
| 42896 | | Rotation angle (degrees) 100.49803006 |
| 42897 | | Shift along axis 223.38807679 |
| 42898 | | |
| 42899 | | |
| 42900 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 42901 | | |
| 42902 | | Fit molecule CopB_Q9JIF7.pdb (#4) to map |
| 42903 | | relion_locres_filtered_20240326_GT.mrc (#34) using 3240 atoms |
| 42904 | | average map value = 0.008342, steps = 48 |
| 42905 | | shifted from previous position = 0.213 |
| 42906 | | rotated from previous position = 0.325 degrees |
| 42907 | | atoms outside contour = 1419, contour level = 0.0064458 |
| 42908 | | |
| 42909 | | |
| 42910 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 42911 | | |
| 42912 | | Fit molecule CopB_Q9JIF7.pdb (#4) to map |
| 42913 | | relion_locres_filtered_20240326_GT.mrc (#34) using 3240 atoms |
| 42914 | | average map value = 0.008342, steps = 48 |
| 42915 | | shifted from previous position = 0.00776 |
| 42916 | | rotated from previous position = 0.0241 degrees |
| 42917 | | atoms outside contour = 1418, contour level = 0.0064458 |
| 42918 | | |
| 42919 | | |
| 42920 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 42921 | | |
| 42922 | | Fit molecule CopB_Q9JIF7.pdb (#4) to map |
| 42923 | | relion_locres_filtered_20240326_GT.mrc (#34) using 3240 atoms |
| 42924 | | average map value = 0.008342, steps = 36 |
| 42925 | | shifted from previous position = 0.0144 |
| 42926 | | rotated from previous position = 0.0481 degrees |
| 42927 | | atoms outside contour = 1420, contour level = 0.0064458 |
| 42928 | | |
| 42929 | | |
| 42930 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 42931 | | |
| 42932 | | Fit molecule CopB_Q9JIF7.pdb (#4) to map |
| 42933 | | relion_locres_filtered_20240326_GT.mrc (#34) using 3240 atoms |
| 42934 | | average map value = 0.008342, steps = 40 |
| 42935 | | shifted from previous position = 0.031 |
| 42936 | | rotated from previous position = 0.0424 degrees |
| 42937 | | atoms outside contour = 1418, contour level = 0.0064458 |
| 42938 | | |
| 42939 | | |
| 42940 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 42941 | | |
| 42942 | | Fit molecule CopB_Q9JIF7.pdb (#4) to map |
| 42943 | | relion_locres_filtered_20240326_GT.mrc (#34) using 3240 atoms |
| 42944 | | average map value = 0.008342, steps = 36 |
| 42945 | | shifted from previous position = 0.0136 |
| 42946 | | rotated from previous position = 0.0235 degrees |
| 42947 | | atoms outside contour = 1416, contour level = 0.0064458 |
| 42948 | | |
| 42949 | | |
| 42950 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 42951 | | |
| 42952 | | Fit molecule CopB_Q9JIF7.pdb (#4) to map |
| 42953 | | relion_locres_filtered_20240326_GT.mrc (#34) using 3240 atoms |
| 42954 | | average map value = 0.008342, steps = 44 |
| 42955 | | shifted from previous position = 0.00504 |
| 42956 | | rotated from previous position = 0.0201 degrees |
| 42957 | | atoms outside contour = 1418, contour level = 0.0064458 |
| 42958 | | |
| 42959 | | |
| 42960 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 42961 | | |
| 42962 | | Fit molecule CopB_Q9JIF7.pdb (#4) to map |
| 42963 | | relion_locres_filtered_20240326_GT.mrc (#34) using 3240 atoms |
| 42964 | | average map value = 0.008342, steps = 44 |
| 42965 | | shifted from previous position = 0.00145 |
| 42966 | | rotated from previous position = 0.0365 degrees |
| 42967 | | atoms outside contour = 1419, contour level = 0.0064458 |
| 42968 | | |
| 42969 | | |
| 42970 | | > fitmap #4 inMap #34 |
| 42971 | | |
| 42972 | | Fit molecule CopB_Q9JIF7.pdb (#4) to map |
| 42973 | | relion_locres_filtered_20240326_GT.mrc (#34) using 7211 atoms |
| 42974 | | average map value = 0.009093, steps = 48 |
| 42975 | | shifted from previous position = 0.0942 |
| 42976 | | rotated from previous position = 0.3 degrees |
| 42977 | | atoms outside contour = 3174, contour level = 0.0064458 |
| 42978 | | |
| 42979 | | Position of CopB_Q9JIF7.pdb (#4) relative to |
| 42980 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 42981 | | Matrix rotation and translation |
| 42982 | | -0.02202831 -0.72743960 0.68581804 220.24647955 |
| 42983 | | -0.01800794 0.68616191 0.72722593 241.13299244 |
| 42984 | | -0.99959515 0.00366939 -0.02821467 272.86847264 |
| 42985 | | Axis -0.36792593 0.85702663 0.36074348 |
| 42986 | | Axis point 255.08370612 0.00000000 -61.21252613 |
| 42987 | | Rotation angle (degrees) 100.48863782 |
| 42988 | | Shift along axis 224.05852775 |
| 42989 | | |
| 42990 | | |
| 42991 | | > hide #!34 models |
| 42992 | | |
| 42993 | | > select clear |
| 42994 | | |
| 42995 | | Drag select of 84 residues |
| 42996 | | |
| 42997 | | > select up |
| 42998 | | |
| 42999 | | 797 atoms, 808 bonds, 106 residues, 1 model selected |
| 43000 | | |
| 43001 | | > select up |
| 43002 | | |
| 43003 | | 3240 atoms, 3289 bonds, 418 residues, 1 model selected |
| 43004 | | |
| 43005 | | > select down |
| 43006 | | |
| 43007 | | 797 atoms, 808 bonds, 106 residues, 1 model selected |
| 43008 | | |
| 43009 | | > show #!34 models |
| 43010 | | |
| 43011 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 43012 | | |
| 43013 | | Fit molecule CopB_Q9JIF7.pdb (#4) to map |
| 43014 | | relion_locres_filtered_20240326_GT.mrc (#34) using 797 atoms |
| 43015 | | average map value = 0.009017, steps = 52 |
| 43016 | | shifted from previous position = 1.7 |
| 43017 | | rotated from previous position = 6.56 degrees |
| 43018 | | atoms outside contour = 268, contour level = 0.0064458 |
| 43019 | | |
| 43020 | | |
| 43021 | | > undo |
| 43022 | | |
| 43023 | | Drag select of 188 residues |
| 43024 | | |
| 43025 | | > select up |
| 43026 | | |
| 43027 | | 1720 atoms, 1745 bonds, 223 residues, 1 model selected |
| 43028 | | Drag select of 151 residues |
| 43029 | | |
| 43030 | | > select up |
| 43031 | | |
| 43032 | | 1513 atoms, 1531 bonds, 200 residues, 1 model selected |
| 43033 | | |
| 43034 | | > select up |
| 43035 | | |
| 43036 | | 3240 atoms, 3289 bonds, 418 residues, 1 model selected |
| 43037 | | |
| 43038 | | > select down |
| 43039 | | |
| 43040 | | 1513 atoms, 1531 bonds, 200 residues, 1 model selected |
| 43041 | | |
| 43042 | | > select clear |
| 43043 | | |
| 43044 | | [Repeated 1 time(s)]Drag select of 43 residues |
| 43045 | | Drag select of 158 residues |
| 43046 | | |
| 43047 | | > select up |
| 43048 | | |
| 43049 | | 1538 atoms, 1557 bonds, 203 residues, 1 model selected |
| 43050 | | |
| 43051 | | > select up |
| 43052 | | |
| 43053 | | 3240 atoms, 3289 bonds, 418 residues, 1 model selected |
| 43054 | | |
| 43055 | | > show #!34 models |
| 43056 | | |
| 43057 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 43058 | | |
| 43059 | | Fit molecule CopB_Q9JIF7.pdb (#4) to map |
| 43060 | | relion_locres_filtered_20240326_GT.mrc (#34) using 3240 atoms |
| 43061 | | average map value = 0.008403, steps = 48 |
| 43062 | | shifted from previous position = 0.256 |
| 43063 | | rotated from previous position = 0.202 degrees |
| 43064 | | atoms outside contour = 1414, contour level = 0.0064458 |
| 43065 | | |
| 43066 | | |
| 43067 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 43068 | | |
| 43069 | | Fit molecule CopB_Q9JIF7.pdb (#4) to map |
| 43070 | | relion_locres_filtered_20240326_GT.mrc (#34) using 3240 atoms |
| 43071 | | average map value = 0.008402, steps = 44 |
| 43072 | | shifted from previous position = 0.0114 |
| 43073 | | rotated from previous position = 0.0342 degrees |
| 43074 | | atoms outside contour = 1413, contour level = 0.0064458 |
| 43075 | | |
| 43076 | | |
| 43077 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 43078 | | |
| 43079 | | Fit molecule CopB_Q9JIF7.pdb (#4) to map |
| 43080 | | relion_locres_filtered_20240326_GT.mrc (#34) using 3240 atoms |
| 43081 | | average map value = 0.008403, steps = 44 |
| 43082 | | shifted from previous position = 0.0109 |
| 43083 | | rotated from previous position = 0.0247 degrees |
| 43084 | | atoms outside contour = 1413, contour level = 0.0064458 |
| 43085 | | |
| 43086 | | |
| 43087 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 43088 | | |
| 43089 | | Fit molecule CopB_Q9JIF7.pdb (#4) to map |
| 43090 | | relion_locres_filtered_20240326_GT.mrc (#34) using 3240 atoms |
| 43091 | | average map value = 0.008403, steps = 44 |
| 43092 | | shifted from previous position = 0.00781 |
| 43093 | | rotated from previous position = 0.0287 degrees |
| 43094 | | atoms outside contour = 1413, contour level = 0.0064458 |
| 43095 | | |
| 43096 | | |
| 43097 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 43098 | | |
| 43099 | | Fit molecule CopB_Q9JIF7.pdb (#4) to map |
| 43100 | | relion_locres_filtered_20240326_GT.mrc (#34) using 3240 atoms |
| 43101 | | average map value = 0.008403, steps = 36 |
| 43102 | | shifted from previous position = 0.012 |
| 43103 | | rotated from previous position = 0.0293 degrees |
| 43104 | | atoms outside contour = 1414, contour level = 0.0064458 |
| 43105 | | |
| 43106 | | |
| 43107 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 43108 | | |
| 43109 | | Fit molecule CopB_Q9JIF7.pdb (#4) to map |
| 43110 | | relion_locres_filtered_20240326_GT.mrc (#34) using 3240 atoms |
| 43111 | | average map value = 0.008403, steps = 44 |
| 43112 | | shifted from previous position = 0.0216 |
| 43113 | | rotated from previous position = 0.0315 degrees |
| 43114 | | atoms outside contour = 1413, contour level = 0.0064458 |
| 43115 | | |
| 43116 | | |
| 43117 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 43118 | | |
| 43119 | | Fit molecule CopB_Q9JIF7.pdb (#4) to map |
| 43120 | | relion_locres_filtered_20240326_GT.mrc (#34) using 3240 atoms |
| 43121 | | average map value = 0.008403, steps = 40 |
| 43122 | | shifted from previous position = 0.0304 |
| 43123 | | rotated from previous position = 0.00825 degrees |
| 43124 | | atoms outside contour = 1412, contour level = 0.0064458 |
| 43125 | | |
| 43126 | | |
| 43127 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 43128 | | |
| 43129 | | Fit molecule CopB_Q9JIF7.pdb (#4) to map |
| 43130 | | relion_locres_filtered_20240326_GT.mrc (#34) using 3240 atoms |
| 43131 | | average map value = 0.008403, steps = 36 |
| 43132 | | shifted from previous position = 0.00821 |
| 43133 | | rotated from previous position = 0.0239 degrees |
| 43134 | | atoms outside contour = 1415, contour level = 0.0064458 |
| 43135 | | |
| 43136 | | |
| 43137 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 43138 | | |
| 43139 | | Fit molecule CopB_Q9JIF7.pdb (#4) to map |
| 43140 | | relion_locres_filtered_20240326_GT.mrc (#34) using 3240 atoms |
| 43141 | | average map value = 0.008403, steps = 44 |
| 43142 | | shifted from previous position = 0.0135 |
| 43143 | | rotated from previous position = 0.011 degrees |
| 43144 | | atoms outside contour = 1411, contour level = 0.0064458 |
| 43145 | | |
| 43146 | | |
| 43147 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 43148 | | |
| 43149 | | Fit molecule CopB_Q9JIF7.pdb (#4) to map |
| 43150 | | relion_locres_filtered_20240326_GT.mrc (#34) using 3240 atoms |
| 43151 | | average map value = 0.008402, steps = 48 |
| 43152 | | shifted from previous position = 0.00431 |
| 43153 | | rotated from previous position = 0.0168 degrees |
| 43154 | | atoms outside contour = 1412, contour level = 0.0064458 |
| 43155 | | |
| 43156 | | |
| 43157 | | > fitmap #4 inMap #34 |
| 43158 | | |
| 43159 | | Fit molecule CopB_Q9JIF7.pdb (#4) to map |
| 43160 | | relion_locres_filtered_20240326_GT.mrc (#34) using 7211 atoms |
| 43161 | | average map value = 0.009128, steps = 60 |
| 43162 | | shifted from previous position = 0.105 |
| 43163 | | rotated from previous position = 0.212 degrees |
| 43164 | | atoms outside contour = 3174, contour level = 0.0064458 |
| 43165 | | |
| 43166 | | Position of CopB_Q9JIF7.pdb (#4) relative to |
| 43167 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 43168 | | Matrix rotation and translation |
| 43169 | | -0.02205954 -0.72904320 0.68411211 220.19108610 |
| 43170 | | -0.01519801 0.68444410 0.72890692 241.09722099 |
| 43171 | | -0.99964113 0.00568221 -0.02617852 272.91548671 |
| 43172 | | Axis -0.36774727 0.85615942 0.36297794 |
| 43173 | | Axis point 254.88464436 0.00000000 -61.75159142 |
| 43174 | | Rotation angle (degrees) 100.48027313 |
| 43175 | | Shift along axis 224.50529001 |
| 43176 | | |
| 43177 | | |
| 43178 | | > fitmap #4 inMap #34 |
| 43179 | | |
| 43180 | | Fit molecule CopB_Q9JIF7.pdb (#4) to map |
| 43181 | | relion_locres_filtered_20240326_GT.mrc (#34) using 7211 atoms |
| 43182 | | average map value = 0.009128, steps = 48 |
| 43183 | | shifted from previous position = 0.0147 |
| 43184 | | rotated from previous position = 0.00889 degrees |
| 43185 | | atoms outside contour = 3170, contour level = 0.0064458 |
| 43186 | | |
| 43187 | | Position of CopB_Q9JIF7.pdb (#4) relative to |
| 43188 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 43189 | | Matrix rotation and translation |
| 43190 | | -0.02200949 -0.72909117 0.68406260 220.18947119 |
| 43191 | | -0.01532928 0.68439402 0.72895119 241.11096923 |
| 43192 | | -0.99964023 0.00555765 -0.02623960 272.92257115 |
| 43193 | | Axis -0.36783523 0.85613871 0.36293767 |
| 43194 | | Axis point 254.91117447 0.00000000 -61.75060152 |
| 43195 | | Rotation angle (degrees) 100.48205346 |
| 43196 | | Shift along axis 224.48487369 |
| 43197 | | |
| 43198 | | |
| 43199 | | > fitmap sel inMap #34 moveWholeMolecules false |
| 43200 | | |
| 43201 | | Fit molecule CopB_Q9JIF7.pdb (#4) to map |
| 43202 | | relion_locres_filtered_20240326_GT.mrc (#34) using 3240 atoms |
| 43203 | | average map value = 0.008403, steps = 44 |
| 43204 | | shifted from previous position = 0.14 |
| 43205 | | rotated from previous position = 0.2 degrees |
| 43206 | | atoms outside contour = 1413, contour level = 0.0064458 |
| 43207 | | |
| 43208 | | |
| 43209 | | > select add #4 |
| 43210 | | |
| 43211 | | 7211 atoms, 7324 bonds, 1 pseudobond, 914 residues, 2 models selected |
| 43212 | | |
| 43213 | | > select subtract #4 |
| 43214 | | |
| 43215 | | Nothing selected |
| 43216 | | |
| 43217 | | > show #!3 models |
| 43218 | | |
| 43219 | | > hide #!4 models |
| 43220 | | |
| 43221 | | > hide #!3 models |
| 43222 | | |
| 43223 | | > color #35 #ff2f92ff |
| 43224 | | |
| 43225 | | > color #36 #ff2f92ff |
| 43226 | | |
| 43227 | | > color #37 #ff2f92ff |
| 43228 | | |
| 43229 | | > color #26.1 #ff2f92ff |
| 43230 | | |
| 43231 | | > color #6 #ff2f92ff |
| 43232 | | |
| 43233 | | > color #5 #ff2f92ff |
| 43234 | | |
| 43235 | | > show #5 models |
| 43236 | | |
| 43237 | | > ui tool show Matchmaker |
| 43238 | | |
| 43239 | | > show #!26.1 models |
| 43240 | | |
| 43241 | | > hide #!26.1 models |
| 43242 | | |
| 43243 | | > show #!26.1 models |
| 43244 | | |
| 43245 | | > hide #!26.1 models |
| 43246 | | |
| 43247 | | > show #!35 models |
| 43248 | | |
| 43249 | | > matchmaker #5 to #35 |
| 43250 | | |
| 43251 | | Parameters |
| 43252 | | --- |
| 43253 | | Chain pairing | bb |
| 43254 | | Alignment algorithm | Needleman-Wunsch |
| 43255 | | Similarity matrix | BLOSUM-62 |
| 43256 | | SS fraction | 0.3 |
| 43257 | | Gap open (HH/SS/other) | 18/18/6 |
| 43258 | | Gap extend | 1 |
| 43259 | | SS matrix | | | H | S | O |
| 43260 | | ---|---|---|--- |
| 43261 | | H | 6 | -9 | -6 |
| 43262 | | S | | 6 | -6 |
| 43263 | | O | | | 4 |
| 43264 | | Iteration cutoff | 2 |
| 43265 | | |
| 43266 | | Matchmaker copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A, chain A (#35) |
| 43267 | | with hArf1_P84078, chain A (#5), sequence alignment score = 714.3 |
| 43268 | | RMSD between 159 pruned atom pairs is 0.735 angstroms; (across all 159 pairs: |
| 43269 | | 0.735) |
| 43270 | | |
| 43271 | | |
| 43272 | | > hide #!34 models |
| 43273 | | |
| 43274 | | > hide #5 models |
| 43275 | | |
| 43276 | | > show #5 models |
| 43277 | | |
| 43278 | | > hide #5 models |
| 43279 | | |
| 43280 | | > show #5 models |
| 43281 | | |
| 43282 | | > hide #5 models |
| 43283 | | |
| 43284 | | > show #5 models |
| 43285 | | |
| 43286 | | > hide #5 models |
| 43287 | | |
| 43288 | | > show #5 models |
| 43289 | | |
| 43290 | | > show #6 models |
| 43291 | | |
| 43292 | | > hide #5 models |
| 43293 | | |
| 43294 | | > hide #!35 models |
| 43295 | | |
| 43296 | | > show #!36 models |
| 43297 | | |
| 43298 | | > hide #!36 models |
| 43299 | | |
| 43300 | | > show #!37 models |
| 43301 | | |
| 43302 | | > matchmaker #6 to #37 |
| 43303 | | |
| 43304 | | Parameters |
| 43305 | | --- |
| 43306 | | Chain pairing | bb |
| 43307 | | Alignment algorithm | Needleman-Wunsch |
| 43308 | | Similarity matrix | BLOSUM-62 |
| 43309 | | SS fraction | 0.3 |
| 43310 | | Gap open (HH/SS/other) | 18/18/6 |
| 43311 | | Gap extend | 1 |
| 43312 | | SS matrix | | | H | S | O |
| 43313 | | ---|---|---|--- |
| 43314 | | H | 6 | -9 | -6 |
| 43315 | | S | | 6 | -6 |
| 43316 | | O | | | 4 |
| 43317 | | Iteration cutoff | 2 |
| 43318 | | |
| 43319 | | Matchmaker copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A, chain A (#37) |
| 43320 | | with hArf1_P84078, chain A (#6), sequence alignment score = 714.3 |
| 43321 | | RMSD between 159 pruned atom pairs is 0.735 angstroms; (across all 159 pairs: |
| 43322 | | 0.735) |
| 43323 | | |
| 43324 | | |
| 43325 | | > matchmaker #6 to #37 |
| 43326 | | |
| 43327 | | Parameters |
| 43328 | | --- |
| 43329 | | Chain pairing | bb |
| 43330 | | Alignment algorithm | Needleman-Wunsch |
| 43331 | | Similarity matrix | BLOSUM-62 |
| 43332 | | SS fraction | 0.3 |
| 43333 | | Gap open (HH/SS/other) | 18/18/6 |
| 43334 | | Gap extend | 1 |
| 43335 | | SS matrix | | | H | S | O |
| 43336 | | ---|---|---|--- |
| 43337 | | H | 6 | -9 | -6 |
| 43338 | | S | | 6 | -6 |
| 43339 | | O | | | 4 |
| 43340 | | Iteration cutoff | 2 |
| 43341 | | |
| 43342 | | Matchmaker copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A, chain A (#37) |
| 43343 | | with hArf1_P84078, chain A (#6), sequence alignment score = 714.3 |
| 43344 | | RMSD between 159 pruned atom pairs is 0.735 angstroms; (across all 159 pairs: |
| 43345 | | 0.735) |
| 43346 | | |
| 43347 | | |
| 43348 | | > hide #!37 models |
| 43349 | | |
| 43350 | | > hide #6 models |
| 43351 | | |
| 43352 | | > show #!34 models |
| 43353 | | |
| 43354 | | > show #7 models |
| 43355 | | |
| 43356 | | > show #!3 models |
| 43357 | | |
| 43358 | | > fitmap #7 inMap #34 |
| 43359 | | |
| 43360 | | Fit molecule CopBprime_O55029.pdb (#7) to map |
| 43361 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6695 atoms |
| 43362 | | average map value = 0.009016, steps = 44 |
| 43363 | | shifted from previous position = 0.0015 |
| 43364 | | rotated from previous position = 0.00327 degrees |
| 43365 | | atoms outside contour = 2762, contour level = 0.0064458 |
| 43366 | | |
| 43367 | | Position of CopBprime_O55029.pdb (#7) relative to |
| 43368 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 43369 | | Matrix rotation and translation |
| 43370 | | -0.13040565 -0.23223349 -0.96387861 237.21405953 |
| 43371 | | 0.00513980 -0.97232561 0.23357331 213.62080010 |
| 43372 | | -0.99144740 0.02550513 0.12799038 275.47756577 |
| 43373 | | Axis -0.65666229 0.08700700 0.74914913 |
| 43374 | | Axis point 228.29565523 105.85174821 0.00000000 |
| 43375 | | Rotation angle (degrees) 170.88430171 |
| 43376 | | Shift along axis 69.19075642 |
| 43377 | | |
| 43378 | | |
| 43379 | | > hide #7 models |
| 43380 | | |
| 43381 | | > fitmap #3 inMap #34 |
| 43382 | | |
| 43383 | | Fit molecule CopA_F8WHL2.pdb (#3) to map |
| 43384 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6692 atoms |
| 43385 | | average map value = 0.008601, steps = 64 |
| 43386 | | shifted from previous position = 0.0381 |
| 43387 | | rotated from previous position = 0.0442 degrees |
| 43388 | | atoms outside contour = 2941, contour level = 0.0064458 |
| 43389 | | |
| 43390 | | Position of CopA_F8WHL2.pdb (#3) relative to |
| 43391 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 43392 | | Matrix rotation and translation |
| 43393 | | 0.90671494 0.39954081 0.13503758 210.03056431 |
| 43394 | | -0.22975457 0.73645358 -0.63627741 283.01088612 |
| 43395 | | -0.35366770 0.54589674 0.75954979 275.94131079 |
| 43396 | | Axis 0.82923738 0.34280286 -0.44141994 |
| 43397 | | Axis point 0.00000000 -393.93203557 527.48012669 |
| 43398 | | Rotation angle (degrees) 45.46384793 |
| 43399 | | Shift along axis 149.37613895 |
| 43400 | | |
| 43401 | | |
| 43402 | | > show #!4 models |
| 43403 | | |
| 43404 | | > fitmap #4 inMap #34 |
| 43405 | | |
| 43406 | | Fit molecule CopB_Q9JIF7.pdb (#4) to map |
| 43407 | | relion_locres_filtered_20240326_GT.mrc (#34) using 7211 atoms |
| 43408 | | average map value = 0.009133, steps = 48 |
| 43409 | | shifted from previous position = 0.0607 |
| 43410 | | rotated from previous position = 0.175 degrees |
| 43411 | | atoms outside contour = 3169, contour level = 0.0064458 |
| 43412 | | |
| 43413 | | Position of CopB_Q9JIF7.pdb (#4) relative to |
| 43414 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 43415 | | Matrix rotation and translation |
| 43416 | | -0.02227576 -0.73059739 0.68244505 220.16670275 |
| 43417 | | -0.01329774 0.68277057 0.73051182 241.11428481 |
| 43418 | | -0.99966342 0.00719773 -0.02492453 272.95439119 |
| 43419 | | Axis -0.36781473 0.85537428 0.36475630 |
| 43420 | | Axis point 254.75617977 0.00000000 -62.17248178 |
| 43421 | | Rotation angle (degrees) 100.49879570 |
| 43422 | | Shift along axis 224.82423663 |
| 43423 | | |
| 43424 | | |
| 43425 | | > show #5 models |
| 43426 | | |
| 43427 | | > fitmap #5 inMap #34 |
| 43428 | | |
| 43429 | | Fit molecule hArf1_P84078 (#5) to map relion_locres_filtered_20240326_GT.mrc |
| 43430 | | (#34) using 1457 atoms |
| 43431 | | average map value = 0.007776, steps = 60 |
| 43432 | | shifted from previous position = 0.26 |
| 43433 | | rotated from previous position = 2.79 degrees |
| 43434 | | atoms outside contour = 719, contour level = 0.0064458 |
| 43435 | | |
| 43436 | | Position of hArf1_P84078 (#5) relative to |
| 43437 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 43438 | | Matrix rotation and translation |
| 43439 | | 0.04234882 -0.02818621 0.99870521 172.65196320 |
| 43440 | | -0.66605054 -0.74587192 0.00719247 238.26541094 |
| 43441 | | 0.74470346 -0.66549275 -0.05036024 212.55715318 |
| 43442 | | Axis -0.69984360 0.26425660 -0.66361690 |
| 43443 | | Axis point 0.00000000 166.46411478 -28.78247041 |
| 43444 | | Rotation angle (degrees) 151.27561153 |
| 43445 | | Shift along axis -198.92268355 |
| 43446 | | |
| 43447 | | |
| 43448 | | > fitmap #5 inMap #34 |
| 43449 | | |
| 43450 | | Fit molecule hArf1_P84078 (#5) to map relion_locres_filtered_20240326_GT.mrc |
| 43451 | | (#34) using 1457 atoms |
| 43452 | | average map value = 0.007776, steps = 28 |
| 43453 | | shifted from previous position = 0.0319 |
| 43454 | | rotated from previous position = 0.0581 degrees |
| 43455 | | atoms outside contour = 720, contour level = 0.0064458 |
| 43456 | | |
| 43457 | | Position of hArf1_P84078 (#5) relative to |
| 43458 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 43459 | | Matrix rotation and translation |
| 43460 | | 0.04231572 -0.02779859 0.99871748 172.67209877 |
| 43461 | | -0.66534100 -0.74650277 0.00741217 238.24370144 |
| 43462 | | 0.74533933 -0.66480135 -0.05008434 212.54957544 |
| 43463 | | Axis -0.69986868 0.26380224 -0.66377120 |
| 43464 | | Axis point 0.00000000 166.36050683 -28.75252991 |
| 43465 | | Rotation angle (degrees) 151.29875184 |
| 43466 | | Shift along axis -199.08285740 |
| 43467 | | |
| 43468 | | |
| 43469 | | > fitmap #5 inMap #34 |
| 43470 | | |
| 43471 | | Fit molecule hArf1_P84078 (#5) to map relion_locres_filtered_20240326_GT.mrc |
| 43472 | | (#34) using 1457 atoms |
| 43473 | | average map value = 0.007776, steps = 60 |
| 43474 | | shifted from previous position = 0.26 |
| 43475 | | rotated from previous position = 2.79 degrees |
| 43476 | | atoms outside contour = 719, contour level = 0.0064458 |
| 43477 | | |
| 43478 | | Position of hArf1_P84078 (#5) relative to |
| 43479 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 43480 | | Matrix rotation and translation |
| 43481 | | 0.04234882 -0.02818621 0.99870521 172.65196320 |
| 43482 | | -0.66605054 -0.74587192 0.00719247 238.26541094 |
| 43483 | | 0.74470346 -0.66549275 -0.05036024 212.55715318 |
| 43484 | | Axis -0.69984360 0.26425660 -0.66361690 |
| 43485 | | Axis point 0.00000000 166.46411478 -28.78247041 |
| 43486 | | Rotation angle (degrees) 151.27561153 |
| 43487 | | Shift along axis -198.92268355 |
| 43488 | | |
| 43489 | | |
| 43490 | | > fitmap #5 inMap #34 |
| 43491 | | |
| 43492 | | Fit molecule hArf1_P84078 (#5) to map relion_locres_filtered_20240326_GT.mrc |
| 43493 | | (#34) using 1457 atoms |
| 43494 | | average map value = 0.007776, steps = 28 |
| 43495 | | shifted from previous position = 0.0319 |
| 43496 | | rotated from previous position = 0.0581 degrees |
| 43497 | | atoms outside contour = 720, contour level = 0.0064458 |
| 43498 | | |
| 43499 | | Position of hArf1_P84078 (#5) relative to |
| 43500 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 43501 | | Matrix rotation and translation |
| 43502 | | 0.04231572 -0.02779859 0.99871748 172.67209877 |
| 43503 | | -0.66534100 -0.74650277 0.00741217 238.24370144 |
| 43504 | | 0.74533933 -0.66480135 -0.05008434 212.54957544 |
| 43505 | | Axis -0.69986868 0.26380224 -0.66377120 |
| 43506 | | Axis point 0.00000000 166.36050683 -28.75252991 |
| 43507 | | Rotation angle (degrees) 151.29875184 |
| 43508 | | Shift along axis -199.08285740 |
| 43509 | | |
| 43510 | | |
| 43511 | | > show #6 models |
| 43512 | | |
| 43513 | | > fitmap #6 inMap #34 |
| 43514 | | |
| 43515 | | Fit molecule hArf1_P84078 (#6) to map relion_locres_filtered_20240326_GT.mrc |
| 43516 | | (#34) using 1457 atoms |
| 43517 | | average map value = 0.01, steps = 100 |
| 43518 | | shifted from previous position = 0.303 |
| 43519 | | rotated from previous position = 1.54 degrees |
| 43520 | | atoms outside contour = 540, contour level = 0.0064458 |
| 43521 | | |
| 43522 | | Position of hArf1_P84078 (#6) relative to |
| 43523 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 43524 | | Matrix rotation and translation |
| 43525 | | -0.84109618 -0.49489980 0.21824615 292.94251604 |
| 43526 | | -0.49080235 0.52875420 -0.69248251 231.43485077 |
| 43527 | | 0.22731089 -0.68956013 -0.68763113 256.77208513 |
| 43528 | | Axis 0.28186120 -0.87428563 0.39519476 |
| 43529 | | Axis point 183.38607825 0.00000000 181.13455437 |
| 43530 | | Rotation angle (degrees) 179.70297261 |
| 43531 | | Shift along axis -18.29605358 |
| 43532 | | |
| 43533 | | |
| 43534 | | > fitmap #6 inMap #34 |
| 43535 | | |
| 43536 | | Fit molecule hArf1_P84078 (#6) to map relion_locres_filtered_20240326_GT.mrc |
| 43537 | | (#34) using 1457 atoms |
| 43538 | | average map value = 0.01, steps = 80 |
| 43539 | | shifted from previous position = 0.0386 |
| 43540 | | rotated from previous position = 0.0913 degrees |
| 43541 | | atoms outside contour = 538, contour level = 0.0064458 |
| 43542 | | |
| 43543 | | Position of hArf1_P84078 (#6) relative to |
| 43544 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 43545 | | Matrix rotation and translation |
| 43546 | | -0.84141080 -0.49438517 0.21819978 292.95934934 |
| 43547 | | -0.49075063 0.52999741 -0.69156817 231.45975086 |
| 43548 | | 0.22625573 -0.68897462 -0.68856539 256.78575999 |
| 43549 | | Axis 0.28158432 -0.87464124 0.39460484 |
| 43550 | | Axis point 183.39036692 0.00000000 180.99833258 |
| 43551 | | Rotation angle (degrees) 179.73613569 |
| 43552 | | Shift along axis -18.62257981 |
| 43553 | | |
| 43554 | | |
| 43555 | | > show #7 models |
| 43556 | | |
| 43557 | | > fitmap #7 inMap #34 |
| 43558 | | |
| 43559 | | Fit molecule CopBprime_O55029.pdb (#7) to map |
| 43560 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6695 atoms |
| 43561 | | average map value = 0.009016, steps = 44 |
| 43562 | | shifted from previous position = 0.00265 |
| 43563 | | rotated from previous position = 0.00798 degrees |
| 43564 | | atoms outside contour = 2763, contour level = 0.0064458 |
| 43565 | | |
| 43566 | | Position of CopBprime_O55029.pdb (#7) relative to |
| 43567 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 43568 | | Matrix rotation and translation |
| 43569 | | -0.13031496 -0.23233256 -0.96386700 237.21589951 |
| 43570 | | 0.00511772 -0.97230159 0.23367373 213.62118254 |
| 43571 | | -0.99145944 0.02551838 0.12789446 275.47979758 |
| 43572 | | Axis -0.65669499 0.08704949 0.74911553 |
| 43573 | | Axis point 228.30445679 105.84953601 0.00000000 |
| 43574 | | Rotation angle (degrees) 170.88090756 |
| 43575 | | Shift along axis 69.18331757 |
| 43576 | | |
| 43577 | | |
| 43578 | | > fitmap #7 inMap #34 |
| 43579 | | |
| 43580 | | Fit molecule CopBprime_O55029.pdb (#7) to map |
| 43581 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6695 atoms |
| 43582 | | average map value = 0.009016, steps = 44 |
| 43583 | | shifted from previous position = 0.00284 |
| 43584 | | rotated from previous position = 0.0074 degrees |
| 43585 | | atoms outside contour = 2763, contour level = 0.0064458 |
| 43586 | | |
| 43587 | | Position of CopBprime_O55029.pdb (#7) relative to |
| 43588 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 43589 | | Matrix rotation and translation |
| 43590 | | -0.13036407 -0.23226920 -0.96387562 237.21339088 |
| 43591 | | 0.00520941 -0.97231900 0.23359927 213.62056134 |
| 43592 | | -0.99145250 0.02543173 0.12796545 275.47872550 |
| 43593 | | Axis -0.65667569 0.08699275 0.74913904 |
| 43594 | | Axis point 228.29457997 105.86087578 0.00000000 |
| 43595 | | Rotation angle (degrees) 170.88009904 |
| 43596 | | Shift along axis 69.18304210 |
| 43597 | | |
| 43598 | | |
| 43599 | | > show #8 models |
| 43600 | | |
| 43601 | | > fitmap #8 inMap #34 |
| 43602 | | |
| 43603 | | Fit molecule CopD_Q5XJY5 (#8) to map relion_locres_filtered_20240326_GT.mrc |
| 43604 | | (#34) using 1462 atoms |
| 43605 | | average map value = 0.00841, steps = 44 |
| 43606 | | shifted from previous position = 0.0258 |
| 43607 | | rotated from previous position = 0.05 degrees |
| 43608 | | atoms outside contour = 660, contour level = 0.0064458 |
| 43609 | | |
| 43610 | | Position of CopD_Q5XJY5 (#8) relative to |
| 43611 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 43612 | | Matrix rotation and translation |
| 43613 | | 0.07187504 0.98845136 0.13340879 -99.02438741 |
| 43614 | | -0.91249811 0.01116004 0.40892868 162.65716677 |
| 43615 | | 0.40271726 -0.15112703 0.90276211 446.03007255 |
| 43616 | | Axis -0.28003492 -0.13465763 -0.95049869 |
| 43617 | | Axis point -59.66632563 162.61379915 0.00000000 |
| 43618 | | Rotation angle (degrees) 90.40688381 |
| 43619 | | Shift along axis -418.12374426 |
| 43620 | | |
| 43621 | | |
| 43622 | | > fitmap #8 inMap #34 |
| 43623 | | |
| 43624 | | Fit molecule CopD_Q5XJY5 (#8) to map relion_locres_filtered_20240326_GT.mrc |
| 43625 | | (#34) using 1462 atoms |
| 43626 | | average map value = 0.00841, steps = 28 |
| 43627 | | shifted from previous position = 0.0355 |
| 43628 | | rotated from previous position = 0.0218 degrees |
| 43629 | | atoms outside contour = 658, contour level = 0.0064458 |
| 43630 | | |
| 43631 | | Position of CopD_Q5XJY5 (#8) relative to |
| 43632 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 43633 | | Matrix rotation and translation |
| 43634 | | 0.07190905 0.98846257 0.13330736 -99.02728885 |
| 43635 | | -0.91234566 0.01117639 0.40926824 162.68327434 |
| 43636 | | 0.40305644 -0.15105248 0.90262321 446.01125269 |
| 43637 | | Axis -0.28016751 -0.13487798 -0.95042838 |
| 43638 | | Axis point -59.73213470 162.60448549 0.00000000 |
| 43639 | | Rotation angle (degrees) 90.40942063 |
| 43640 | | Shift along axis -418.09991335 |
| 43641 | | |
| 43642 | | |
| 43643 | | > hide #8 models |
| 43644 | | |
| 43645 | | > show #8 models |
| 43646 | | |
| 43647 | | > hide #8 models |
| 43648 | | |
| 43649 | | > show #8 models |
| 43650 | | |
| 43651 | | > show #!9 models |
| 43652 | | |
| 43653 | | > fitmap #9 inMap #34 |
| 43654 | | |
| 43655 | | Fit molecule CopG_Q9QZE5 (#9) to map relion_locres_filtered_20240326_GT.mrc |
| 43656 | | (#34) using 6673 atoms |
| 43657 | | average map value = 0.008518, steps = 64 |
| 43658 | | shifted from previous position = 0.00285 |
| 43659 | | rotated from previous position = 0.0196 degrees |
| 43660 | | atoms outside contour = 3982, contour level = 0.0064458 |
| 43661 | | |
| 43662 | | Position of CopG_Q9QZE5 (#9) relative to |
| 43663 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 43664 | | Matrix rotation and translation |
| 43665 | | 0.49555644 -0.51974611 -0.69590788 274.32281607 |
| 43666 | | 0.53779322 -0.44554954 0.71572624 319.08590355 |
| 43667 | | -0.68205737 -0.72893730 0.05872099 294.81320826 |
| 43668 | | Axis -0.80688147 -0.00773586 0.59066272 |
| 43669 | | Axis point 0.00000000 282.61737441 125.51701713 |
| 43670 | | Rotation angle (degrees) 116.46404027 |
| 43671 | | Shift along axis -49.67923130 |
| 43672 | | |
| 43673 | | |
| 43674 | | > fitmap #9 inMap #34 |
| 43675 | | |
| 43676 | | Fit molecule CopG_Q9QZE5 (#9) to map relion_locres_filtered_20240326_GT.mrc |
| 43677 | | (#34) using 6673 atoms |
| 43678 | | average map value = 0.008518, steps = 72 |
| 43679 | | shifted from previous position = 0.00472 |
| 43680 | | rotated from previous position = 0.00969 degrees |
| 43681 | | atoms outside contour = 3982, contour level = 0.0064458 |
| 43682 | | |
| 43683 | | Position of CopG_Q9QZE5 (#9) relative to |
| 43684 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 43685 | | Matrix rotation and translation |
| 43686 | | 0.49566394 -0.51961782 -0.69592714 274.31645257 |
| 43687 | | 0.53778966 -0.44556712 0.71571797 319.08334850 |
| 43688 | | -0.68198206 -0.72901801 0.05859354 294.81271148 |
| 43689 | | Axis -0.80693035 -0.00778876 0.59059524 |
| 43690 | | Axis point -0.00000000 282.60556031 125.50928482 |
| 43691 | | Rotation angle (degrees) 116.46524179 |
| 43692 | | Shift along axis -49.72455120 |
| 43693 | | |
| 43694 | | |
| 43695 | | > hide #!3 models |
| 43696 | | |
| 43697 | | > hide #!4 models |
| 43698 | | |
| 43699 | | > hide #5 models |
| 43700 | | |
| 43701 | | > hide #6 models |
| 43702 | | |
| 43703 | | > hide #7 models |
| 43704 | | |
| 43705 | | > hide #8 models |
| 43706 | | |
| 43707 | | > hide #!26 models |
| 43708 | | |
| 43709 | | > show #!26 models |
| 43710 | | |
| 43711 | | > hide #!34 models |
| 43712 | | |
| 43713 | | > show #!34 models |
| 43714 | | |
| 43715 | | > hide #!34 models |
| 43716 | | |
| 43717 | | > ui mousemode right select |
| 43718 | | |
| 43719 | | Drag select of 269 residues |
| 43720 | | |
| 43721 | | > delete sel |
| 43722 | | |
| 43723 | | > show #!34 models |
| 43724 | | |
| 43725 | | > hide #!34 models |
| 43726 | | |
| 43727 | | > show #!34 models |
| 43728 | | |
| 43729 | | > fitmap #9 inMap #34 |
| 43730 | | |
| 43731 | | Fit molecule CopG_Q9QZE5 (#9) to map relion_locres_filtered_20240326_GT.mrc |
| 43732 | | (#34) using 4566 atoms |
| 43733 | | average map value = 0.01074, steps = 72 |
| 43734 | | shifted from previous position = 0.088 |
| 43735 | | rotated from previous position = 0.409 degrees |
| 43736 | | atoms outside contour = 1879, contour level = 0.0064458 |
| 43737 | | |
| 43738 | | Position of CopG_Q9QZE5 (#9) relative to |
| 43739 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 43740 | | Matrix rotation and translation |
| 43741 | | 0.49877213 -0.51940452 -0.69386259 274.34520892 |
| 43742 | | 0.54040314 -0.43953081 0.71747969 318.91808372 |
| 43743 | | -0.67763619 -0.73282440 0.06146211 295.11334535 |
| 43744 | | Axis -0.80736612 -0.00903304 0.58998165 |
| 43745 | | Axis point 0.00000000 283.40502950 124.75091335 |
| 43746 | | Rotation angle (degrees) 116.08144233 |
| 43747 | | Shift along axis -50.26636765 |
| 43748 | | |
| 43749 | | |
| 43750 | | > fitmap #9 inMap #34 |
| 43751 | | |
| 43752 | | Fit molecule CopG_Q9QZE5 (#9) to map relion_locres_filtered_20240326_GT.mrc |
| 43753 | | (#34) using 4566 atoms |
| 43754 | | average map value = 0.01074, steps = 80 |
| 43755 | | shifted from previous position = 0.0217 |
| 43756 | | rotated from previous position = 0.0237 degrees |
| 43757 | | atoms outside contour = 1876, contour level = 0.0064458 |
| 43758 | | |
| 43759 | | Position of CopG_Q9QZE5 (#9) relative to |
| 43760 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 43761 | | Matrix rotation and translation |
| 43762 | | 0.49908084 -0.51918554 -0.69380450 274.36159020 |
| 43763 | | 0.54045197 -0.43935907 0.71754810 318.91686111 |
| 43764 | | -0.67736990 -0.73308252 0.06131916 295.12113417 |
| 43765 | | Axis -0.80747365 -0.00914810 0.58983270 |
| 43766 | | Axis point 0.00000000 283.42170468 124.71591629 |
| 43767 | | Rotation angle (degrees) 116.07067825 |
| 43768 | | Shift along axis -50.38514135 |
| 43769 | | |
| 43770 | | |
| 43771 | | > fitmap #9 inMap #34 |
| 43772 | | |
| 43773 | | Fit molecule CopG_Q9QZE5 (#9) to map relion_locres_filtered_20240326_GT.mrc |
| 43774 | | (#34) using 4566 atoms |
| 43775 | | average map value = 0.01074, steps = 64 |
| 43776 | | shifted from previous position = 0.00684 |
| 43777 | | rotated from previous position = 0.00808 degrees |
| 43778 | | atoms outside contour = 1875, contour level = 0.0064458 |
| 43779 | | |
| 43780 | | Position of CopG_Q9QZE5 (#9) relative to |
| 43781 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 43782 | | Matrix rotation and translation |
| 43783 | | 0.49918805 -0.51909470 -0.69379534 274.36109060 |
| 43784 | | 0.54044465 -0.43934093 0.71756472 318.91338605 |
| 43785 | | -0.67729673 -0.73315772 0.06122821 295.12739301 |
| 43786 | | Axis -0.80751720 -0.00918364 0.58977253 |
| 43787 | | Axis point 0.00000000 283.41958236 124.70941560 |
| 43788 | | Rotation angle (degrees) 116.06958092 |
| 43789 | | Shift along axis -50.42205343 |
| 43790 | | |
| 43791 | | |
| 43792 | | > fitmap #9 inMap #34 |
| 43793 | | |
| 43794 | | Fit molecule CopG_Q9QZE5 (#9) to map relion_locres_filtered_20240326_GT.mrc |
| 43795 | | (#34) using 4566 atoms |
| 43796 | | average map value = 0.01074, steps = 48 |
| 43797 | | shifted from previous position = 0.0412 |
| 43798 | | rotated from previous position = 0.051 degrees |
| 43799 | | atoms outside contour = 1881, contour level = 0.0064458 |
| 43800 | | |
| 43801 | | Position of CopG_Q9QZE5 (#9) relative to |
| 43802 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 43803 | | Matrix rotation and translation |
| 43804 | | 0.49863214 -0.51967868 -0.69375792 274.34854819 |
| 43805 | | 0.54019886 -0.43962462 0.71757604 318.94247182 |
| 43806 | | -0.67790204 -0.73257372 0.06151887 295.09515181 |
| 43807 | | Axis -0.80731916 -0.00882719 0.59004903 |
| 43808 | | Axis point -0.00000000 283.42057484 124.75295238 |
| 43809 | | Rotation angle (degrees) 116.08708973 |
| 43810 | | Shift along axis -50.18160021 |
| 43811 | | |
| 43812 | | |
| 43813 | | > fitmap #9 inMap #34 |
| 43814 | | |
| 43815 | | Fit molecule CopG_Q9QZE5 (#9) to map relion_locres_filtered_20240326_GT.mrc |
| 43816 | | (#34) using 4566 atoms |
| 43817 | | average map value = 0.01074, steps = 96 |
| 43818 | | shifted from previous position = 0.0339 |
| 43819 | | rotated from previous position = 0.0287 degrees |
| 43820 | | atoms outside contour = 1876, contour level = 0.0064458 |
| 43821 | | |
| 43822 | | Position of CopG_Q9QZE5 (#9) relative to |
| 43823 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 43824 | | Matrix rotation and translation |
| 43825 | | 0.49883627 -0.51937283 -0.69384020 274.36535094 |
| 43826 | | 0.54046357 -0.43942649 0.71749808 318.92212104 |
| 43827 | | -0.67754077 -0.73290942 0.06150022 295.12061589 |
| 43828 | | Axis -0.80737825 -0.00907318 0.58996444 |
| 43829 | | Axis point 0.00000000 283.42436703 124.74290900 |
| 43830 | | Rotation angle (degrees) 116.07485371 |
| 43831 | | Shift along axis -50.29958216 |
| 43832 | | |
| 43833 | | |
| 43834 | | > show #!3 models |
| 43835 | | |
| 43836 | | > show #!4 models |
| 43837 | | |
| 43838 | | > show #5 models |
| 43839 | | |
| 43840 | | > show #6 models |
| 43841 | | |
| 43842 | | > show #7 models |
| 43843 | | |
| 43844 | | > show #8 models |
| 43845 | | |
| 43846 | | > show #10 models |
| 43847 | | |
| 43848 | | > fitmap #10 inMap #34 |
| 43849 | | |
| 43850 | | Fit molecule CopZ1_P61924.pdb (#10) to map |
| 43851 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1420 atoms |
| 43852 | | average map value = 0.009234, steps = 36 |
| 43853 | | shifted from previous position = 0.0309 |
| 43854 | | rotated from previous position = 0.0395 degrees |
| 43855 | | atoms outside contour = 626, contour level = 0.0064458 |
| 43856 | | |
| 43857 | | Position of CopZ1_P61924.pdb (#10) relative to |
| 43858 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 43859 | | Matrix rotation and translation |
| 43860 | | 0.16405062 -0.94536304 -0.28173769 280.95095994 |
| 43861 | | -0.37368258 0.20476526 -0.90467261 278.13157944 |
| 43862 | | 0.91293413 0.25369256 -0.31967383 253.90027754 |
| 43863 | | Axis 0.65834598 -0.67898053 0.32490923 |
| 43864 | | Axis point 175.04449780 0.00000000 294.13537343 |
| 43865 | | Rotation angle (degrees) 118.38728427 |
| 43866 | | Shift along axis 78.61155290 |
| 43867 | | |
| 43868 | | |
| 43869 | | > show #26.3 models |
| 43870 | | |
| 43871 | | > matchmaker #10 to #26.3 |
| 43872 | | |
| 43873 | | Parameters |
| 43874 | | --- |
| 43875 | | Chain pairing | bb |
| 43876 | | Alignment algorithm | Needleman-Wunsch |
| 43877 | | Similarity matrix | BLOSUM-62 |
| 43878 | | SS fraction | 0.3 |
| 43879 | | Gap open (HH/SS/other) | 18/18/6 |
| 43880 | | Gap extend | 1 |
| 43881 | | SS matrix | | | H | S | O |
| 43882 | | ---|---|---|--- |
| 43883 | | H | 6 | -9 | -6 |
| 43884 | | S | | 6 | -6 |
| 43885 | | O | | | 4 |
| 43886 | | Iteration cutoff | 2 |
| 43887 | | |
| 43888 | | Matchmaker 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C, chain C (#26.3) with |
| 43889 | | CopZ1_P61924.pdb, chain A (#10), sequence alignment score = 682.7 |
| 43890 | | RMSD between 136 pruned atom pairs is 0.539 angstroms; (across all 140 pairs: |
| 43891 | | 0.678) |
| 43892 | | |
| 43893 | | |
| 43894 | | > matchmaker #10 to #26.3 |
| 43895 | | |
| 43896 | | Parameters |
| 43897 | | --- |
| 43898 | | Chain pairing | bb |
| 43899 | | Alignment algorithm | Needleman-Wunsch |
| 43900 | | Similarity matrix | BLOSUM-62 |
| 43901 | | SS fraction | 0.3 |
| 43902 | | Gap open (HH/SS/other) | 18/18/6 |
| 43903 | | Gap extend | 1 |
| 43904 | | SS matrix | | | H | S | O |
| 43905 | | ---|---|---|--- |
| 43906 | | H | 6 | -9 | -6 |
| 43907 | | S | | 6 | -6 |
| 43908 | | O | | | 4 |
| 43909 | | Iteration cutoff | 2 |
| 43910 | | |
| 43911 | | Matchmaker 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C, chain C (#26.3) with |
| 43912 | | CopZ1_P61924.pdb, chain A (#10), sequence alignment score = 682.7 |
| 43913 | | RMSD between 136 pruned atom pairs is 0.539 angstroms; (across all 140 pairs: |
| 43914 | | 0.678) |
| 43915 | | |
| 43916 | | |
| 43917 | | > show #11 models |
| 43918 | | |
| 43919 | | > show #24 models |
| 43920 | | |
| 43921 | | > matchmaker #11 to #24 |
| 43922 | | |
| 43923 | | Parameters |
| 43924 | | --- |
| 43925 | | Chain pairing | bb |
| 43926 | | Alignment algorithm | Needleman-Wunsch |
| 43927 | | Similarity matrix | BLOSUM-62 |
| 43928 | | SS fraction | 0.3 |
| 43929 | | Gap open (HH/SS/other) | 18/18/6 |
| 43930 | | Gap extend | 1 |
| 43931 | | SS matrix | | | H | S | O |
| 43932 | | ---|---|---|--- |
| 43933 | | H | 6 | -9 | -6 |
| 43934 | | S | | 6 | -6 |
| 43935 | | O | | | 4 |
| 43936 | | Iteration cutoff | 2 |
| 43937 | | |
| 43938 | | Matchmaker 3kn1_Golph3_xtal.cif, chain A (#24) with Golph3_ Q9CRA5.pdb, chain |
| 43939 | | A (#11), sequence alignment score = 1235.4 |
| 43940 | | RMSD between 224 pruned atom pairs is 0.677 angstroms; (across all 239 pairs: |
| 43941 | | 1.230) |
| 43942 | | |
| 43943 | | |
| 43944 | | > matchmaker #11 to #24 |
| 43945 | | |
| 43946 | | Parameters |
| 43947 | | --- |
| 43948 | | Chain pairing | bb |
| 43949 | | Alignment algorithm | Needleman-Wunsch |
| 43950 | | Similarity matrix | BLOSUM-62 |
| 43951 | | SS fraction | 0.3 |
| 43952 | | Gap open (HH/SS/other) | 18/18/6 |
| 43953 | | Gap extend | 1 |
| 43954 | | SS matrix | | | H | S | O |
| 43955 | | ---|---|---|--- |
| 43956 | | H | 6 | -9 | -6 |
| 43957 | | S | | 6 | -6 |
| 43958 | | O | | | 4 |
| 43959 | | Iteration cutoff | 2 |
| 43960 | | |
| 43961 | | Matchmaker 3kn1_Golph3_xtal.cif, chain A (#24) with Golph3_ Q9CRA5.pdb, chain |
| 43962 | | A (#11), sequence alignment score = 1235.4 |
| 43963 | | RMSD between 224 pruned atom pairs is 0.677 angstroms; (across all 239 pairs: |
| 43964 | | 1.230) |
| 43965 | | |
| 43966 | | |
| 43967 | | > show #28 models |
| 43968 | | |
| 43969 | | > close #12 |
| 43970 | | |
| 43971 | | > combine #10 |
| 43972 | | |
| 43973 | | > matchmaker #12 to #28 |
| 43974 | | |
| 43975 | | Parameters |
| 43976 | | --- |
| 43977 | | Chain pairing | bb |
| 43978 | | Alignment algorithm | Needleman-Wunsch |
| 43979 | | Similarity matrix | BLOSUM-62 |
| 43980 | | SS fraction | 0.3 |
| 43981 | | Gap open (HH/SS/other) | 18/18/6 |
| 43982 | | Gap extend | 1 |
| 43983 | | SS matrix | | | H | S | O |
| 43984 | | ---|---|---|--- |
| 43985 | | H | 6 | -9 | -6 |
| 43986 | | S | | 6 | -6 |
| 43987 | | O | | | 4 |
| 43988 | | Iteration cutoff | 2 |
| 43989 | | |
| 43990 | | Matchmaker copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C, chain C (#28) |
| 43991 | | with copy of CopZ1_P61924.pdb, chain A (#12), sequence alignment score = 682.7 |
| 43992 | | RMSD between 136 pruned atom pairs is 0.539 angstroms; (across all 140 pairs: |
| 43993 | | 0.678) |
| 43994 | | |
| 43995 | | |
| 43996 | | > fitmap #12 inMap #34 |
| 43997 | | |
| 43998 | | Fit molecule copy of CopZ1_P61924.pdb (#12) to map |
| 43999 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1420 atoms |
| 44000 | | average map value = 0.006745, steps = 64 |
| 44001 | | shifted from previous position = 0.39 |
| 44002 | | rotated from previous position = 4.83 degrees |
| 44003 | | atoms outside contour = 736, contour level = 0.0064458 |
| 44004 | | |
| 44005 | | Position of copy of CopZ1_P61924.pdb (#12) relative to |
| 44006 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 44007 | | Matrix rotation and translation |
| 44008 | | 0.27949610 0.26259205 0.92354066 296.75539420 |
| 44009 | | 0.23510266 -0.95131032 0.19933746 181.82495698 |
| 44010 | | 0.93091819 0.16141282 -0.32762361 253.34470051 |
| 44011 | | Axis -0.79981086 -0.15558823 -0.57973691 |
| 44012 | | Axis point 0.00000000 62.15359640 18.24995244 |
| 44013 | | Rotation angle (degrees) 178.64147557 |
| 44014 | | Shift along axis -412.51128564 |
| 44015 | | |
| 44016 | | |
| 44017 | | > fitmap #12 inMap #34 |
| 44018 | | |
| 44019 | | Fit molecule copy of CopZ1_P61924.pdb (#12) to map |
| 44020 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1420 atoms |
| 44021 | | average map value = 0.006745, steps = 28 |
| 44022 | | shifted from previous position = 0.0184 |
| 44023 | | rotated from previous position = 0.0572 degrees |
| 44024 | | atoms outside contour = 738, contour level = 0.0064458 |
| 44025 | | |
| 44026 | | Position of copy of CopZ1_P61924.pdb (#12) relative to |
| 44027 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 44028 | | Matrix rotation and translation |
| 44029 | | 0.27909472 0.26258099 0.92366519 296.74803660 |
| 44030 | | 0.23427529 -0.95144081 0.19968845 181.83677489 |
| 44031 | | 0.93124714 0.16065994 -0.32705834 253.33531105 |
| 44032 | | Axis -0.79968349 -0.15535216 -0.57997588 |
| 44033 | | Axis point 0.00000000 62.20182981 18.15991470 |
| 44034 | | Rotation angle (degrees) 178.60170243 |
| 44035 | | Shift along axis -412.48161185 |
| 44036 | | |
| 44037 | | |
| 44038 | | > fitmap #28 inMap #34 |
| 44039 | | |
| 44040 | | Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#28) to map |
| 44041 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1128 atoms |
| 44042 | | average map value = 0.007773, steps = 48 |
| 44043 | | shifted from previous position = 0.0142 |
| 44044 | | rotated from previous position = 0.0418 degrees |
| 44045 | | atoms outside contour = 478, contour level = 0.0064458 |
| 44046 | | |
| 44047 | | Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#28) relative |
| 44048 | | to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 44049 | | Matrix rotation and translation |
| 44050 | | -0.56968892 -0.71660451 0.40240837 245.63689092 |
| 44051 | | -0.48577288 -0.10134922 -0.86818952 216.21258450 |
| 44052 | | 0.66293230 -0.69007702 -0.29036951 214.84991857 |
| 44053 | | Axis 0.45553213 -0.66630374 0.59036413 |
| 44054 | | Axis point 184.95393002 0.00000000 218.20954457 |
| 44055 | | Rotation angle (degrees) 168.72610284 |
| 44056 | | Shift along axis 94.67192673 |
| 44057 | | |
| 44058 | | |
| 44059 | | > matchmaker #12 to #28 |
| 44060 | | |
| 44061 | | Parameters |
| 44062 | | --- |
| 44063 | | Chain pairing | bb |
| 44064 | | Alignment algorithm | Needleman-Wunsch |
| 44065 | | Similarity matrix | BLOSUM-62 |
| 44066 | | SS fraction | 0.3 |
| 44067 | | Gap open (HH/SS/other) | 18/18/6 |
| 44068 | | Gap extend | 1 |
| 44069 | | SS matrix | | | H | S | O |
| 44070 | | ---|---|---|--- |
| 44071 | | H | 6 | -9 | -6 |
| 44072 | | S | | 6 | -6 |
| 44073 | | O | | | 4 |
| 44074 | | Iteration cutoff | 2 |
| 44075 | | |
| 44076 | | Matchmaker copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C, chain C (#28) |
| 44077 | | with copy of CopZ1_P61924.pdb, chain A (#12), sequence alignment score = 682.7 |
| 44078 | | RMSD between 136 pruned atom pairs is 0.539 angstroms; (across all 140 pairs: |
| 44079 | | 0.678) |
| 44080 | | |
| 44081 | | |
| 44082 | | > hide #12 models |
| 44083 | | |
| 44084 | | > hide #10 models |
| 44085 | | |
| 44086 | | > hide #11 models |
| 44087 | | |
| 44088 | | > hide #!9 models |
| 44089 | | |
| 44090 | | > hide #8 models |
| 44091 | | |
| 44092 | | > hide #7 models |
| 44093 | | |
| 44094 | | > hide #6 models |
| 44095 | | |
| 44096 | | > hide #5 models |
| 44097 | | |
| 44098 | | > hide #!4 models |
| 44099 | | |
| 44100 | | > hide #!3 models |
| 44101 | | |
| 44102 | | > hide #24 models |
| 44103 | | |
| 44104 | | > show #24 models |
| 44105 | | |
| 44106 | | > show #!26.1 models |
| 44107 | | |
| 44108 | | > show #!26.2 models |
| 44109 | | |
| 44110 | | > show #27.1 models |
| 44111 | | |
| 44112 | | > show #27.2 models |
| 44113 | | |
| 44114 | | > show #!29 models |
| 44115 | | |
| 44116 | | > show #!30 models |
| 44117 | | |
| 44118 | | > show #!31 models |
| 44119 | | |
| 44120 | | > hide #!31 models |
| 44121 | | |
| 44122 | | > show #32.1 models |
| 44123 | | |
| 44124 | | > show #32.2 models |
| 44125 | | |
| 44126 | | > fitmap #32.2 inMap #34 |
| 44127 | | |
| 44128 | | Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif B (#32.2) to map |
| 44129 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1222 atoms |
| 44130 | | average map value = 0.00967, steps = 40 |
| 44131 | | shifted from previous position = 0.021 |
| 44132 | | rotated from previous position = 0.0347 degrees |
| 44133 | | atoms outside contour = 445, contour level = 0.0064458 |
| 44134 | | |
| 44135 | | Position of 5mu7_Thermophila_beta_deltaCOPI.cif B (#32.2) relative to |
| 44136 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 44137 | | Matrix rotation and translation |
| 44138 | | 0.97959254 0.04144497 0.19667426 249.11650249 |
| 44139 | | -0.05619291 0.99596256 0.07000672 194.53498036 |
| 44140 | | -0.19297878 -0.07962976 0.97796641 284.10165336 |
| 44141 | | Axis -0.34907553 0.90899186 -0.22777197 |
| 44142 | | Axis point 1632.26880529 0.00000000 -1141.93249083 |
| 44143 | | Rotation angle (degrees) 12.37637091 |
| 44144 | | Shift along axis 25.15984564 |
| 44145 | | |
| 44146 | | |
| 44147 | | > fitmap #32.1 inMap #34 |
| 44148 | | |
| 44149 | | Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) to map |
| 44150 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2991 atoms |
| 44151 | | average map value = 0.01065, steps = 48 |
| 44152 | | shifted from previous position = 0.0261 |
| 44153 | | rotated from previous position = 0.0371 degrees |
| 44154 | | atoms outside contour = 1247, contour level = 0.0064458 |
| 44155 | | |
| 44156 | | Position of 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) relative to |
| 44157 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 44158 | | Matrix rotation and translation |
| 44159 | | 0.99553470 -0.07935222 0.05112623 253.52559741 |
| 44160 | | 0.06877173 0.98070360 0.18300518 192.96746113 |
| 44161 | | -0.06466154 -0.17867197 0.98178165 287.89707254 |
| 44162 | | Axis -0.88727983 0.28405486 0.36338320 |
| 44163 | | Axis point 0.00000000 1842.64101745 -961.84044084 |
| 44164 | | Rotation angle (degrees) 11.75998331 |
| 44165 | | Shift along axis -65.51784426 |
| 44166 | | |
| 44167 | | |
| 44168 | | > fitmap #32.1 inMap #34 |
| 44169 | | |
| 44170 | | Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) to map |
| 44171 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2991 atoms |
| 44172 | | average map value = 0.01065, steps = 48 |
| 44173 | | shifted from previous position = 0.0296 |
| 44174 | | rotated from previous position = 0.0293 degrees |
| 44175 | | atoms outside contour = 1245, contour level = 0.0064458 |
| 44176 | | |
| 44177 | | Position of 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) relative to |
| 44178 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 44179 | | Matrix rotation and translation |
| 44180 | | 0.99549817 -0.07949331 0.05161596 253.50777442 |
| 44181 | | 0.06882177 0.98069682 0.18302269 192.95935324 |
| 44182 | | -0.06516868 -0.17864645 0.98175276 287.89709900 |
| 44183 | | Axis -0.88650634 0.28625700 0.36354291 |
| 44184 | | Axis point 0.00000000 1841.69475761 -961.45966514 |
| 44185 | | Rotation angle (degrees) 11.77012642 |
| 44186 | | Shift along axis -64.83733407 |
| 44187 | | |
| 44188 | | |
| 44189 | | > show #!35 models |
| 44190 | | |
| 44191 | | > show #!36 models |
| 44192 | | |
| 44193 | | > show #!37 models |
| 44194 | | |
| 44195 | | > show #38 models |
| 44196 | | |
| 44197 | | > show #39 models |
| 44198 | | |
| 44199 | | > hide #24,28,38-39#26.3#27.1-2#32.1-2#!29-30,35-37#!26.1-2 atoms |
| 44200 | | |
| 44201 | | > show #25.3 models |
| 44202 | | |
| 44203 | | > hide #25.3 models |
| 44204 | | |
| 44205 | | > show #25.3 models |
| 44206 | | |
| 44207 | | > hide #25.3 models |
| 44208 | | |
| 44209 | | > show #25.3 models |
| 44210 | | |
| 44211 | | > hide #25.3 models |
| 44212 | | |
| 44213 | | > show #!25.4 models |
| 44214 | | |
| 44215 | | > close #25.4 |
| 44216 | | |
| 44217 | | > show #!25.6 models |
| 44218 | | |
| 44219 | | > hide #!25.6 models |
| 44220 | | |
| 44221 | | > show #!25.6 models |
| 44222 | | |
| 44223 | | > hide #!25.6 models |
| 44224 | | |
| 44225 | | > show #!25.6 models |
| 44226 | | |
| 44227 | | > hide #!25.6 models |
| 44228 | | |
| 44229 | | > show #!25.6 models |
| 44230 | | |
| 44231 | | > hide #!25.6 models |
| 44232 | | |
| 44233 | | > show #!25.6 models |
| 44234 | | |
| 44235 | | > hide #!25.6 models |
| 44236 | | |
| 44237 | | > show #!25.6 models |
| 44238 | | |
| 44239 | | > hide #!25.6 models |
| 44240 | | |
| 44241 | | > show #!25.6 models |
| 44242 | | |
| 44243 | | > hide #!25.6 models |
| 44244 | | |
| 44245 | | > show #!25.6 models |
| 44246 | | |
| 44247 | | > hide #!25.6 models |
| 44248 | | |
| 44249 | | > show #25.3 models |
| 44250 | | |
| 44251 | | > hide #25.3 models |
| 44252 | | |
| 44253 | | > show #!25.2 models |
| 44254 | | |
| 44255 | | > hide #!25.2 models |
| 44256 | | |
| 44257 | | > show #!25.2 models |
| 44258 | | |
| 44259 | | > hide #!25.2 models |
| 44260 | | |
| 44261 | | > show #!25.2 models |
| 44262 | | |
| 44263 | | > hide #!25.2 models |
| 44264 | | |
| 44265 | | > show #25.1 models |
| 44266 | | |
| 44267 | | > hide #25.1 models |
| 44268 | | |
| 44269 | | > show #25.1 models |
| 44270 | | |
| 44271 | | > show #!25.2 models |
| 44272 | | |
| 44273 | | > show #25.3 models |
| 44274 | | |
| 44275 | | > show #!25.6 models |
| 44276 | | |
| 44277 | | > hide #!25.6 models |
| 44278 | | |
| 44279 | | > hide #25.3 models |
| 44280 | | |
| 44281 | | > hide #!25.2 models |
| 44282 | | |
| 44283 | | > hide #25.1 models |
| 44284 | | |
| 44285 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 44286 | | > dataset/Chimera sessions/20240406_leaf_fitting_v25.cxs" |
| 44287 | | |
| 44288 | | [Repeated 1 time(s)] |
| 44289 | | |
| 44290 | | ——— End of log from Mon Apr 15 16:36:47 2024 ——— |
| 44291 | | |
| 44292 | | opened ChimeraX session |
| 44293 | | |
| 44294 | | > show #!25.2 models |
| 44295 | | |
| 44296 | | > hide #!25.2 models |
| 44297 | | |
| 44298 | | > show #!4 models |
| 44299 | | |
| 44300 | | > show #!9 models |
| 44301 | | |
| 44302 | | > show #!3 models |
| 44303 | | |
| 44304 | | > hide #!32 models |
| 44305 | | |
| 44306 | | > show #!32 models |
| 44307 | | |
| 44308 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/Structure |
| 44309 | | > files/alphafold/fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif" |
| 44310 | | |
| 44311 | | Chain information for fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif #40 |
| 44312 | | --- |
| 44313 | | Chain | Description |
| 44314 | | A | . |
| 44315 | | B | . |
| 44316 | | C | . |
| 44317 | | D | . |
| 44318 | | E | . |
| 44319 | | F | . |
| 44320 | | G | . |
| 44321 | | H | . |
| 44322 | | |
| 44323 | | |
| 44324 | | > select add #40 |
| 44325 | | |
| 44326 | | 39508 atoms, 40254 bonds, 5000 residues, 1 model selected |
| 44327 | | |
| 44328 | | > hide sel atoms |
| 44329 | | |
| 44330 | | > show sel cartoons |
| 44331 | | |
| 44332 | | > ui mousemode right "translate selected models" |
| 44333 | | |
| 44334 | | > view matrix models #40,1,0,0,234.59,0,1,0,391.2,0,0,1,309.71 |
| 44335 | | |
| 44336 | | > view matrix models #40,1,0,0,284.73,0,1,0,301.14,0,0,1,305.21 |
| 44337 | | |
| 44338 | | > view matrix models #40,1,0,0,402.41,0,1,0,470.42,0,0,1,302.24 |
| 44339 | | |
| 44340 | | > ui mousemode right "rotate selected models" |
| 44341 | | |
| 44342 | | > view matrix models |
| 44343 | | > #40,-0.16022,0.94225,0.29411,411.46,0.73565,0.31265,-0.60089,467.05,-0.65814,0.12009,-0.74326,318.3 |
| 44344 | | |
| 44345 | | > view matrix models |
| 44346 | | > #40,0.86,0.41775,0.29305,400.37,-0.0030509,0.57848,-0.81569,476.76,-0.51028,0.7006,0.49877,307.01 |
| 44347 | | |
| 44348 | | > view matrix models |
| 44349 | | > #40,0.85383,0.41387,-0.31573,403.09,-0.00082885,-0.60545,-0.79589,484.53,-0.52055,0.67981,-0.5166,311.64 |
| 44350 | | |
| 44351 | | > ui mousemode right "translate selected models" |
| 44352 | | |
| 44353 | | > view matrix models |
| 44354 | | > #40,0.85383,0.41387,-0.31573,252.84,-0.00082885,-0.60545,-0.79589,386.37,-0.52055,0.67981,-0.5166,265.49 |
| 44355 | | |
| 44356 | | > view matrix models |
| 44357 | | > #40,0.85383,0.41387,-0.31573,331.52,-0.00082885,-0.60545,-0.79589,336.66,-0.52055,0.67981,-0.5166,323.89 |
| 44358 | | |
| 44359 | | > ui mousemode right "rotate selected models" |
| 44360 | | |
| 44361 | | > view matrix models |
| 44362 | | > #40,0.57393,0.75462,-0.31803,333.26,0.64193,-0.65572,-0.39744,326.1,-0.50846,0.023945,-0.86075,329.56 |
| 44363 | | |
| 44364 | | > view matrix models |
| 44365 | | > #40,0.52833,0.8481,0.039831,331.76,0.82036,-0.49783,-0.28139,322,-0.21882,0.18134,-0.95877,324.79 |
| 44366 | | |
| 44367 | | > ui mousemode right "translate selected models" |
| 44368 | | |
| 44369 | | > view matrix models |
| 44370 | | > #40,0.52833,0.8481,0.039831,328.27,0.82036,-0.49783,-0.28139,321.63,-0.21882,0.18134,-0.95877,318.64 |
| 44371 | | |
| 44372 | | > ui tool show "Fit in Map" |
| 44373 | | |
| 44374 | | > fitmap #40 inMap #34 |
| 44375 | | |
| 44376 | | Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map |
| 44377 | | relion_locres_filtered_20240326_GT.mrc (#34) using 39508 atoms |
| 44378 | | average map value = 0.004388, steps = 200 |
| 44379 | | shifted from previous position = 8.17 |
| 44380 | | rotated from previous position = 17.6 degrees |
| 44381 | | atoms outside contour = 32899, contour level = 0.0064458 |
| 44382 | | |
| 44383 | | Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) |
| 44384 | | relative to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 44385 | | Matrix rotation and translation |
| 44386 | | 0.58472728 0.79380900 -0.16721630 266.82467508 |
| 44387 | | 0.79525538 -0.60160797 -0.07507824 245.55671941 |
| 44388 | | -0.16019644 -0.08907937 -0.98305746 234.46350673 |
| 44389 | | Axis -0.89014628 -0.44629997 0.09195612 |
| 44390 | | Axis point 0.00000000 56.47232383 130.79238037 |
| 44391 | | Rotation angle (degrees) 179.54939215 |
| 44392 | | Shift along axis -325.54459557 |
| 44393 | | |
| 44394 | | |
| 44395 | | > ui mousemode right "rotate selected models" |
| 44396 | | |
| 44397 | | > view matrix models |
| 44398 | | > #40,0.37648,0.90384,-0.20331,331.11,0.78777,-0.42782,-0.44315,322.32,-0.48752,0.006674,-0.87309,323.28 |
| 44399 | | |
| 44400 | | > view matrix models |
| 44401 | | > #40,0.31321,0.93565,-0.16265,331.63,0.79103,-0.3518,-0.5005,322.01,-0.52551,0.028098,-0.85032,323.58 |
| 44402 | | |
| 44403 | | > view matrix models |
| 44404 | | > #40,0.24573,0.95264,-0.17917,332.55,0.91774,-0.28814,-0.27335,318.8,-0.31203,-0.097263,-0.94508,321.77 |
| 44405 | | |
| 44406 | | > ui mousemode right "translate selected models" |
| 44407 | | |
| 44408 | | > view matrix models |
| 44409 | | > #40,0.24573,0.95264,-0.17917,321.28,0.91774,-0.28814,-0.27335,321.98,-0.31203,-0.097263,-0.94508,328.46 |
| 44410 | | |
| 44411 | | > view matrix models |
| 44412 | | > #40,0.24573,0.95264,-0.17917,312.5,0.91774,-0.28814,-0.27335,316.29,-0.31203,-0.097263,-0.94508,326.49 |
| 44413 | | |
| 44414 | | > view matrix models |
| 44415 | | > #40,0.24573,0.95264,-0.17917,320.62,0.91774,-0.28814,-0.27335,305.75,-0.31203,-0.097263,-0.94508,330.28 |
| 44416 | | |
| 44417 | | > view matrix models |
| 44418 | | > #40,0.24573,0.95264,-0.17917,306.25,0.91774,-0.28814,-0.27335,324.27,-0.31203,-0.097263,-0.94508,339.84 |
| 44419 | | |
| 44420 | | > fitmap #40 inMap #34 |
| 44421 | | |
| 44422 | | Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map |
| 44423 | | relion_locres_filtered_20240326_GT.mrc (#34) using 39508 atoms |
| 44424 | | average map value = 0.004497, steps = 208 |
| 44425 | | shifted from previous position = 31.1 |
| 44426 | | rotated from previous position = 15.5 degrees |
| 44427 | | atoms outside contour = 31836, contour level = 0.0064458 |
| 44428 | | |
| 44429 | | Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) |
| 44430 | | relative to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 44431 | | Matrix rotation and translation |
| 44432 | | 0.21859002 0.87498356 -0.43199791 268.05474712 |
| 44433 | | 0.89192099 -0.35873760 -0.27528948 246.27440060 |
| 44434 | | -0.39584766 -0.32513247 -0.85883265 245.13026030 |
| 44435 | | Axis -0.78050970 -0.56609006 0.26522945 |
| 44436 | | Axis point 0.00000000 29.20665060 167.23281914 |
| 44437 | | Rotation angle (degrees) 178.17024775 |
| 44438 | | Shift along axis -283.61705421 |
| 44439 | | |
| 44440 | | |
| 44441 | | > view matrix models |
| 44442 | | > #40,0.20524,0.87745,-0.43353,298.83,0.89848,-0.34457,-0.27203,322.09,-0.38808,-0.33369,-0.8591,337.92 |
| 44443 | | |
| 44444 | | > ui mousemode right "rotate selected models" |
| 44445 | | |
| 44446 | | > view matrix models |
| 44447 | | > #40,-0.011958,0.99618,0.086488,298.92,0.92221,0.04442,-0.38413,319.64,-0.38651,0.075166,-0.91922,335.43 |
| 44448 | | |
| 44449 | | > view matrix models |
| 44450 | | > #40,0.096569,0.99434,0.044315,297.56,0.9034,-0.068875,-0.42323,320.83,-0.41778,0.080905,-0.90494,335.78 |
| 44451 | | |
| 44452 | | > view matrix models |
| 44453 | | > #40,0.24162,0.97007,-0.024311,295.94,0.87677,-0.22898,-0.42289,322.28,-0.4158,0.080863,-0.90586,335.76 |
| 44454 | | |
| 44455 | | > view matrix models |
| 44456 | | > #40,0.0047045,0.99981,-0.018662,299.1,0.89663,-0.01248,-0.44261,320.63,-0.44276,-0.01465,-0.89652,336.74 |
| 44457 | | |
| 44458 | | > ui mousemode right "translate selected models" |
| 44459 | | |
| 44460 | | > view matrix models |
| 44461 | | > #40,0.0047045,0.99981,-0.018662,314.77,0.89663,-0.01248,-0.44261,320.29,-0.44276,-0.01465,-0.89652,340.63 |
| 44462 | | |
| 44463 | | > hide #39 models |
| 44464 | | |
| 44465 | | > hide #38 models |
| 44466 | | |
| 44467 | | > hide #!37 models |
| 44468 | | |
| 44469 | | > hide #!36 models |
| 44470 | | |
| 44471 | | > hide #!35 models |
| 44472 | | |
| 44473 | | > show #!35 models |
| 44474 | | |
| 44475 | | > show #!36 models |
| 44476 | | |
| 44477 | | > show #!37 models |
| 44478 | | |
| 44479 | | > show #38 models |
| 44480 | | |
| 44481 | | > show #39 models |
| 44482 | | |
| 44483 | | > select subtract #40 |
| 44484 | | |
| 44485 | | Nothing selected |
| 44486 | | |
| 44487 | | > select add #40 |
| 44488 | | |
| 44489 | | 39508 atoms, 40254 bonds, 5000 residues, 1 model selected |
| 44490 | | |
| 44491 | | > hide #!34 models |
| 44492 | | |
| 44493 | | > view matrix models |
| 44494 | | > #40,0.0047045,0.99981,-0.018662,303.33,0.89663,-0.01248,-0.44261,331.3,-0.44276,-0.01465,-0.89652,331.63 |
| 44495 | | |
| 44496 | | > view matrix models |
| 44497 | | > #40,0.0047045,0.99981,-0.018662,312.1,0.89663,-0.01248,-0.44261,323.64,-0.44276,-0.01465,-0.89652,350.59 |
| 44498 | | |
| 44499 | | > view matrix models |
| 44500 | | > #40,0.0047045,0.99981,-0.018662,297.07,0.89663,-0.01248,-0.44261,331.48,-0.44276,-0.01465,-0.89652,341.31 |
| 44501 | | |
| 44502 | | > view matrix models |
| 44503 | | > #40,0.0047045,0.99981,-0.018662,298.07,0.89663,-0.01248,-0.44261,326.15,-0.44276,-0.01465,-0.89652,341.83 |
| 44504 | | |
| 44505 | | > view matrix models |
| 44506 | | > #40,0.0047045,0.99981,-0.018662,298.51,0.89663,-0.01248,-0.44261,325.59,-0.44276,-0.01465,-0.89652,334.13 |
| 44507 | | |
| 44508 | | > view matrix models |
| 44509 | | > #40,0.0047045,0.99981,-0.018662,306.69,0.89663,-0.01248,-0.44261,325.39,-0.44276,-0.01465,-0.89652,325.25 |
| 44510 | | |
| 44511 | | > ui mousemode right "rotate selected models" |
| 44512 | | |
| 44513 | | > view matrix models |
| 44514 | | > #40,-0.092242,0.9883,0.12146,307.55,0.8583,0.14075,-0.49347,325.14,-0.5048,0.058726,-0.86124,325.49 |
| 44515 | | |
| 44516 | | > show #!34 models |
| 44517 | | |
| 44518 | | > fitmap #40 inMap #34 |
| 44519 | | |
| 44520 | | Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map |
| 44521 | | relion_locres_filtered_20240326_GT.mrc (#34) using 39508 atoms |
| 44522 | | average map value = 0.004389, steps = 164 |
| 44523 | | shifted from previous position = 13.9 |
| 44524 | | rotated from previous position = 12.3 degrees |
| 44525 | | atoms outside contour = 32253, contour level = 0.0064458 |
| 44526 | | |
| 44527 | | Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) |
| 44528 | | relative to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 44529 | | Matrix rotation and translation |
| 44530 | | -0.10637774 0.98314105 0.14871942 249.35910865 |
| 44531 | | 0.72385981 0.17911285 -0.66629241 251.93157492 |
| 44532 | | -0.68169698 0.03677333 -0.73070990 236.30563794 |
| 44533 | | Axis 0.62855969 0.74241460 -0.23180441 |
| 44534 | | Axis point 80.49126806 0.00000000 143.53994937 |
| 44535 | | Rotation angle (degrees) 145.99485923 |
| 44536 | | Shift along axis 288.99807412 |
| 44537 | | |
| 44538 | | |
| 44539 | | > hide #!34 models |
| 44540 | | |
| 44541 | | > show #!34 models |
| 44542 | | |
| 44543 | | > select subtract #40 |
| 44544 | | |
| 44545 | | Nothing selected |
| 44546 | | |
| 44547 | | > hide #40 models |
| 44548 | | |
| 44549 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 44550 | | > dataset/Chimera sessions/20240521_leaf_fitting_v26.cxs" |
| 44551 | | |
| 44552 | | > hide #39 models |
| 44553 | | |
| 44554 | | > hide #38 models |
| 44555 | | |
| 44556 | | > hide #!37 models |
| 44557 | | |
| 44558 | | > hide #!36 models |
| 44559 | | |
| 44560 | | > hide #!35 models |
| 44561 | | |
| 44562 | | > hide #!34 models |
| 44563 | | |
| 44564 | | > show #!34 models |
| 44565 | | |
| 44566 | | > hide #!30 models |
| 44567 | | |
| 44568 | | > hide #!29 models |
| 44569 | | |
| 44570 | | > hide #28 models |
| 44571 | | |
| 44572 | | > hide #!27 models |
| 44573 | | |
| 44574 | | > hide #!26 models |
| 44575 | | |
| 44576 | | > hide #!25 models |
| 44577 | | |
| 44578 | | > hide #24 models |
| 44579 | | |
| 44580 | | > hide #!9 models |
| 44581 | | |
| 44582 | | > hide #!4 models |
| 44583 | | |
| 44584 | | > hide #!3 models |
| 44585 | | |
| 44586 | | > hide #!32 models |
| 44587 | | |
| 44588 | | > show #40 models |
| 44589 | | |
| 44590 | | > select add #40 |
| 44591 | | |
| 44592 | | 39508 atoms, 40254 bonds, 5000 residues, 1 model selected |
| 44593 | | |
| 44594 | | > view matrix models |
| 44595 | | > #40,0.49541,0.86394,0.090463,304.34,0.73844,-0.36401,-0.56763,331.05,-0.45747,0.34801,-0.8183,308.13 |
| 44596 | | |
| 44597 | | > ui mousemode right "translate selected models" |
| 44598 | | |
| 44599 | | > view matrix models |
| 44600 | | > #40,0.49541,0.86394,0.090463,229.31,0.73844,-0.36401,-0.56763,383.49,-0.45747,0.34801,-0.8183,249.02 |
| 44601 | | |
| 44602 | | > view matrix models |
| 44603 | | > #40,0.49541,0.86394,0.090463,253.32,0.73844,-0.36401,-0.56763,374.1,-0.45747,0.34801,-0.8183,201.17 |
| 44604 | | |
| 44605 | | > select subtract #40 |
| 44606 | | |
| 44607 | | Nothing selected |
| 44608 | | |
| 44609 | | > select #40/A |
| 44610 | | |
| 44611 | | 9740 atoms, 9959 bonds, 1224 residues, 1 model selected |
| 44612 | | |
| 44613 | | > color sel blue |
| 44614 | | |
| 44615 | | > select add #40 |
| 44616 | | |
| 44617 | | 39508 atoms, 40254 bonds, 5000 residues, 1 model selected |
| 44618 | | |
| 44619 | | > select subtract #40 |
| 44620 | | |
| 44621 | | Nothing selected |
| 44622 | | |
| 44623 | | > select #40/b |
| 44624 | | |
| 44625 | | 7507 atoms, 7626 bonds, 953 residues, 1 model selected |
| 44626 | | |
| 44627 | | > color sel dark green |
| 44628 | | |
| 44629 | | > select add #40 |
| 44630 | | |
| 44631 | | 39508 atoms, 40254 bonds, 5000 residues, 1 model selected |
| 44632 | | |
| 44633 | | > select subtract #40 |
| 44634 | | |
| 44635 | | Nothing selected |
| 44636 | | |
| 44637 | | > select #40/c |
| 44638 | | |
| 44639 | | 7218 atoms, 7376 bonds, 906 residues, 1 model selected |
| 44640 | | |
| 44641 | | > color sel cyan |
| 44642 | | |
| 44643 | | > select add #40 |
| 44644 | | |
| 44645 | | 39508 atoms, 40254 bonds, 5000 residues, 1 model selected |
| 44646 | | |
| 44647 | | > select subtract #40 |
| 44648 | | |
| 44649 | | Nothing selected |
| 44650 | | |
| 44651 | | > select #40/d |
| 44652 | | |
| 44653 | | 4011 atoms, 4079 bonds, 511 residues, 1 model selected |
| 44654 | | |
| 44655 | | > color sel chocolate |
| 44656 | | |
| 44657 | | > select add #40 |
| 44658 | | |
| 44659 | | 39508 atoms, 40254 bonds, 5000 residues, 1 model selected |
| 44660 | | |
| 44661 | | > select subtract #40 |
| 44662 | | |
| 44663 | | Nothing selected |
| 44664 | | |
| 44665 | | > select #40/e |
| 44666 | | |
| 44667 | | 2423 atoms, 2468 bonds, 308 residues, 1 model selected |
| 44668 | | |
| 44669 | | > select #40/e |
| 44670 | | |
| 44671 | | 2423 atoms, 2468 bonds, 308 residues, 1 model selected |
| 44672 | | |
| 44673 | | > color sel orange |
| 44674 | | |
| 44675 | | > select add #40 |
| 44676 | | |
| 44677 | | 39508 atoms, 40254 bonds, 5000 residues, 1 model selected |
| 44678 | | |
| 44679 | | > select subtract #40 |
| 44680 | | |
| 44681 | | Nothing selected |
| 44682 | | |
| 44683 | | > select #40/f |
| 44684 | | |
| 44685 | | 6841 atoms, 6958 bonds, 874 residues, 1 model selected |
| 44686 | | |
| 44687 | | > color sel lime |
| 44688 | | |
| 44689 | | > select add #40 |
| 44690 | | |
| 44691 | | 39508 atoms, 40254 bonds, 5000 residues, 1 model selected |
| 44692 | | |
| 44693 | | > select subtract #40 |
| 44694 | | |
| 44695 | | Nothing selected |
| 44696 | | |
| 44697 | | > select #40/g |
| 44698 | | |
| 44699 | | 1420 atoms, 1441 bonds, 177 residues, 1 model selected |
| 44700 | | |
| 44701 | | > color sel yellow |
| 44702 | | |
| 44703 | | > select #40/j |
| 44704 | | |
| 44705 | | Nothing selected |
| 44706 | | |
| 44707 | | > hbonds |
| 44708 | | |
| 44709 | | 119 atoms were skipped as donors/acceptors due to missing heavy-atom bond |
| 44710 | | partners |
| 44711 | | |
| 44712 | | 22431 hydrogen bonds found |
| 44713 | | |
| 44714 | | > select #40/h |
| 44715 | | |
| 44716 | | 348 atoms, 347 bonds, 28 pseudobonds, 47 residues, 2 models selected |
| 44717 | | |
| 44718 | | > color sel purple |
| 44719 | | |
| 44720 | | > select add #40 |
| 44721 | | |
| 44722 | | 39508 atoms, 40254 bonds, 4621 pseudobonds, 5000 residues, 2 models selected |
| 44723 | | |
| 44724 | | > select subtract #40 |
| 44725 | | |
| 44726 | | Nothing selected |
| 44727 | | |
| 44728 | | > select add #40 |
| 44729 | | |
| 44730 | | 39508 atoms, 40254 bonds, 4621 pseudobonds, 5000 residues, 2 models selected |
| 44731 | | |
| 44732 | | > select subtract #40 |
| 44733 | | |
| 44734 | | Nothing selected |
| 44735 | | |
| 44736 | | > close #41 |
| 44737 | | |
| 44738 | | > select add #40 |
| 44739 | | |
| 44740 | | 39508 atoms, 40254 bonds, 5000 residues, 1 model selected |
| 44741 | | |
| 44742 | | > select subtract #40 |
| 44743 | | |
| 44744 | | Nothing selected |
| 44745 | | |
| 44746 | | > show #38 models |
| 44747 | | |
| 44748 | | > hide #38 models |
| 44749 | | |
| 44750 | | > show #!3 models |
| 44751 | | |
| 44752 | | > ui tool show Matchmaker |
| 44753 | | |
| 44754 | | > matchmaker #40 to #3 |
| 44755 | | |
| 44756 | | Parameters |
| 44757 | | --- |
| 44758 | | Chain pairing | bb |
| 44759 | | Alignment algorithm | Needleman-Wunsch |
| 44760 | | Similarity matrix | BLOSUM-62 |
| 44761 | | SS fraction | 0.3 |
| 44762 | | Gap open (HH/SS/other) | 18/18/6 |
| 44763 | | Gap extend | 1 |
| 44764 | | SS matrix | | | H | S | O |
| 44765 | | ---|---|---|--- |
| 44766 | | H | 6 | -9 | -6 |
| 44767 | | S | | 6 | -6 |
| 44768 | | O | | | 4 |
| 44769 | | Iteration cutoff | 2 |
| 44770 | | |
| 44771 | | Matchmaker CopA_F8WHL2.pdb, chain A (#3) with |
| 44772 | | fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif, chain A (#40), sequence |
| 44773 | | alignment score = 5650.7 |
| 44774 | | RMSD between 321 pruned atom pairs is 0.997 angstroms; (across all 824 pairs: |
| 44775 | | 9.767) |
| 44776 | | |
| 44777 | | |
| 44778 | | > hide #!3 models |
| 44779 | | |
| 44780 | | > show #!3 models |
| 44781 | | |
| 44782 | | > hide #40 models |
| 44783 | | |
| 44784 | | > show #40 models |
| 44785 | | |
| 44786 | | > hide #40 models |
| 44787 | | |
| 44788 | | > show #40 models |
| 44789 | | |
| 44790 | | > hide #!34 models |
| 44791 | | |
| 44792 | | > hide #40 models |
| 44793 | | |
| 44794 | | > show #40 models |
| 44795 | | |
| 44796 | | > hide #40 models |
| 44797 | | |
| 44798 | | > show #40 models |
| 44799 | | |
| 44800 | | > hide #!3 models |
| 44801 | | |
| 44802 | | > show #!3 models |
| 44803 | | |
| 44804 | | > hide #!3 models |
| 44805 | | |
| 44806 | | > show #!3 models |
| 44807 | | |
| 44808 | | > ui mousemode right select |
| 44809 | | |
| 44810 | | > hide #40 models |
| 44811 | | |
| 44812 | | > show #40 models |
| 44813 | | |
| 44814 | | > ui tool show Matchmaker |
| 44815 | | |
| 44816 | | > matchmaker #40 to #4 |
| 44817 | | |
| 44818 | | Parameters |
| 44819 | | --- |
| 44820 | | Chain pairing | bb |
| 44821 | | Alignment algorithm | Needleman-Wunsch |
| 44822 | | Similarity matrix | BLOSUM-62 |
| 44823 | | SS fraction | 0.3 |
| 44824 | | Gap open (HH/SS/other) | 18/18/6 |
| 44825 | | Gap extend | 1 |
| 44826 | | SS matrix | | | H | S | O |
| 44827 | | ---|---|---|--- |
| 44828 | | H | 6 | -9 | -6 |
| 44829 | | S | | 6 | -6 |
| 44830 | | O | | | 4 |
| 44831 | | Iteration cutoff | 2 |
| 44832 | | |
| 44833 | | Matchmaker CopB_Q9JIF7.pdb, chain A (#4) with |
| 44834 | | fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif, chain B (#40), sequence |
| 44835 | | alignment score = 4735.7 |
| 44836 | | RMSD between 278 pruned atom pairs is 1.072 angstroms; (across all 914 pairs: |
| 44837 | | 6.141) |
| 44838 | | |
| 44839 | | |
| 44840 | | > show #!34 models |
| 44841 | | |
| 44842 | | > show #!2 models |
| 44843 | | |
| 44844 | | > hide #!3 models |
| 44845 | | |
| 44846 | | > hide #!2 models |
| 44847 | | |
| 44848 | | > hide #!34 models |
| 44849 | | |
| 44850 | | > ui mousemode right select |
| 44851 | | |
| 44852 | | > select #40/A:634 |
| 44853 | | |
| 44854 | | 12 atoms, 12 bonds, 1 residue, 1 model selected |
| 44855 | | |
| 44856 | | > select clear |
| 44857 | | |
| 44858 | | > select #40/H:46 |
| 44859 | | |
| 44860 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 44861 | | |
| 44862 | | > select #40/H:8 |
| 44863 | | |
| 44864 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 44865 | | |
| 44866 | | > select #40/H:9 |
| 44867 | | |
| 44868 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 44869 | | |
| 44870 | | > select #40/H:10 |
| 44871 | | |
| 44872 | | 4 atoms, 3 bonds, 1 residue, 1 model selected |
| 44873 | | |
| 44874 | | > select #40/H:11 |
| 44875 | | |
| 44876 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 44877 | | |
| 44878 | | > select #40/H:12 |
| 44879 | | |
| 44880 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 44881 | | |
| 44882 | | > select #40/H:13 |
| 44883 | | |
| 44884 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 44885 | | |
| 44886 | | > show #!34 models |
| 44887 | | |
| 44888 | | > volume #34 level 0.01184 |
| 44889 | | |
| 44890 | | > show #!4 models |
| 44891 | | |
| 44892 | | > hide #!4 models |
| 44893 | | |
| 44894 | | > show #!4 models |
| 44895 | | |
| 44896 | | > hide #!4 models |
| 44897 | | |
| 44898 | | > show #!4 models |
| 44899 | | |
| 44900 | | > hide #!4 models |
| 44901 | | |
| 44902 | | > show #!3 models |
| 44903 | | |
| 44904 | | > hide #!3 models |
| 44905 | | |
| 44906 | | > show #!4 models |
| 44907 | | |
| 44908 | | > hide #!4 models |
| 44909 | | |
| 44910 | | > show #!4 models |
| 44911 | | |
| 44912 | | > hide #!4 models |
| 44913 | | |
| 44914 | | > show #5 models |
| 44915 | | |
| 44916 | | > hide #5 models |
| 44917 | | |
| 44918 | | > show #6 models |
| 44919 | | |
| 44920 | | > hide #6 models |
| 44921 | | |
| 44922 | | > show #7 models |
| 44923 | | |
| 44924 | | > hide #7 models |
| 44925 | | |
| 44926 | | > show #7 models |
| 44927 | | |
| 44928 | | > hide #7 models |
| 44929 | | |
| 44930 | | > show #8 models |
| 44931 | | |
| 44932 | | > hide #8 models |
| 44933 | | |
| 44934 | | > show #!9 models |
| 44935 | | |
| 44936 | | > show #8 models |
| 44937 | | |
| 44938 | | > hide #8 models |
| 44939 | | |
| 44940 | | > select add #40 |
| 44941 | | |
| 44942 | | 39508 atoms, 40254 bonds, 5000 residues, 1 model selected |
| 44943 | | |
| 44944 | | > select #40/B #40/h |
| 44945 | | |
| 44946 | | 7855 atoms, 7973 bonds, 1000 residues, 1 model selected |
| 44947 | | |
| 44948 | | > fitmap sel inMap #34 |
| 44949 | | |
| 44950 | | Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map |
| 44951 | | relion_locres_filtered_20240326_GT.mrc (#34) using 7855 atoms |
| 44952 | | average map value = 0.008027, steps = 96 |
| 44953 | | shifted from previous position = 1.99 |
| 44954 | | rotated from previous position = 4.54 degrees |
| 44955 | | atoms outside contour = 5565, contour level = 0.011843 |
| 44956 | | |
| 44957 | | Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) |
| 44958 | | relative to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 44959 | | Matrix rotation and translation |
| 44960 | | -0.55133787 0.81826284 0.16270371 218.63511633 |
| 44961 | | 0.82536859 0.56340587 -0.03661333 261.19268218 |
| 44962 | | -0.12162755 0.11410422 -0.98599543 268.92489827 |
| 44963 | | Axis 0.46823282 0.88332933 0.02207537 |
| 44964 | | Axis point 52.07818554 0.00000000 128.45275782 |
| 44965 | | Rotation angle (degrees) 170.73836738 |
| 44966 | | Shift along axis 339.02791132 |
| 44967 | | |
| 44968 | | |
| 44969 | | > hide #40/A |
| 44970 | | |
| 44971 | | > hide #40/C |
| 44972 | | |
| 44973 | | > hide #40/D |
| 44974 | | |
| 44975 | | > hide #40/E |
| 44976 | | |
| 44977 | | > hide #40/F |
| 44978 | | |
| 44979 | | > hide #40/g |
| 44980 | | |
| 44981 | | > select #40/A |
| 44982 | | |
| 44983 | | 9740 atoms, 9959 bonds, 1224 residues, 1 model selected |
| 44984 | | |
| 44985 | | > cartoon hide sel |
| 44986 | | |
| 44987 | | > select #40/C |
| 44988 | | |
| 44989 | | 7218 atoms, 7376 bonds, 906 residues, 1 model selected |
| 44990 | | |
| 44991 | | > cartoon hide sel |
| 44992 | | |
| 44993 | | > select #40/D |
| 44994 | | |
| 44995 | | 4011 atoms, 4079 bonds, 511 residues, 1 model selected |
| 44996 | | |
| 44997 | | > cartoon hide sel |
| 44998 | | |
| 44999 | | > select #40/E |
| 45000 | | |
| 45001 | | 2423 atoms, 2468 bonds, 308 residues, 1 model selected |
| 45002 | | |
| 45003 | | > cartoon hide sel |
| 45004 | | |
| 45005 | | > select #40/F |
| 45006 | | |
| 45007 | | 6841 atoms, 6958 bonds, 874 residues, 1 model selected |
| 45008 | | |
| 45009 | | > cartoon hide sel |
| 45010 | | |
| 45011 | | > select #40/G |
| 45012 | | |
| 45013 | | 1420 atoms, 1441 bonds, 177 residues, 1 model selected |
| 45014 | | |
| 45015 | | > cartoon hide sel |
| 45016 | | |
| 45017 | | > hide #!9 models |
| 45018 | | |
| 45019 | | > volume #34 level 0.00987 |
| 45020 | | |
| 45021 | | > select #40/B #40/h |
| 45022 | | |
| 45023 | | 7855 atoms, 7973 bonds, 1000 residues, 1 model selected |
| 45024 | | |
| 45025 | | > fitmap sel inMap #34 |
| 45026 | | |
| 45027 | | Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map |
| 45028 | | relion_locres_filtered_20240326_GT.mrc (#34) using 7855 atoms |
| 45029 | | average map value = 0.008027, steps = 124 |
| 45030 | | shifted from previous position = 0.0117 |
| 45031 | | rotated from previous position = 0.0075 degrees |
| 45032 | | atoms outside contour = 5046, contour level = 0.0098704 |
| 45033 | | |
| 45034 | | Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) |
| 45035 | | relative to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 45036 | | Matrix rotation and translation |
| 45037 | | -0.55130906 0.81830346 0.16259698 218.64123658 |
| 45038 | | 0.82538951 0.56337101 -0.03667798 261.20229085 |
| 45039 | | -0.12161615 0.11398494 -0.98601063 268.92086397 |
| 45040 | | Axis 0.46825276 0.88332007 0.02202309 |
| 45041 | | Axis point 52.07086061 0.00000000 128.45942589 |
| 45042 | | Rotation angle (degrees) 170.74215114 |
| 45043 | | Shift along axis 339.02705427 |
| 45044 | | |
| 45045 | | |
| 45046 | | > fitmap sel inMap #34 |
| 45047 | | |
| 45048 | | Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map |
| 45049 | | relion_locres_filtered_20240326_GT.mrc (#34) using 7855 atoms |
| 45050 | | average map value = 0.008027, steps = 180 |
| 45051 | | shifted from previous position = 0.0115 |
| 45052 | | rotated from previous position = 0.0183 degrees |
| 45053 | | atoms outside contour = 5042, contour level = 0.0098704 |
| 45054 | | |
| 45055 | | Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) |
| 45056 | | relative to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 45057 | | Matrix rotation and translation |
| 45058 | | -0.55153846 0.81816881 0.16249657 218.63118093 |
| 45059 | | 0.82522764 0.56360153 -0.03677871 261.19672471 |
| 45060 | | -0.12167451 0.11381178 -0.98602343 268.91088302 |
| 45061 | | Axis 0.46813192 0.88338610 0.02194336 |
| 45062 | | Axis point 52.08757088 0.00000000 128.46507520 |
| 45063 | | Rotation angle (degrees) 170.74423093 |
| 45064 | | Shift along axis 338.98659745 |
| 45065 | | |
| 45066 | | |
| 45067 | | > ui mousemode right "translate selected models" |
| 45068 | | |
| 45069 | | > view matrix models |
| 45070 | | > #40,-0.5624,0.81178,0.15722,286.27,0.81949,0.57256,-0.024894,338.86,-0.11023,0.11484,-0.98725,346.69 |
| 45071 | | |
| 45072 | | > fitmap sel inMap #34 |
| 45073 | | |
| 45074 | | Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map |
| 45075 | | relion_locres_filtered_20240326_GT.mrc (#34) using 7855 atoms |
| 45076 | | average map value = 0.008027, steps = 100 |
| 45077 | | shifted from previous position = 5.48 |
| 45078 | | rotated from previous position = 0.0362 degrees |
| 45079 | | atoms outside contour = 5046, contour level = 0.0098704 |
| 45080 | | |
| 45081 | | Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) |
| 45082 | | relative to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 45083 | | Matrix rotation and translation |
| 45084 | | -0.55125874 0.81829194 0.16282541 218.64816997 |
| 45085 | | 0.82544073 0.56331488 -0.03638629 261.18746369 |
| 45086 | | -0.12149658 0.11434447 -0.98598374 268.92316731 |
| 45087 | | Axis 0.46827538 0.88330341 0.02220914 |
| 45088 | | Axis point 52.07588489 0.00000000 128.43293399 |
| 45089 | | Rotation angle (degrees) 170.73839773 |
| 45090 | | Shift along axis 339.06788680 |
| 45091 | | |
| 45092 | | |
| 45093 | | > view matrix models |
| 45094 | | > #40,-0.56212,0.81191,0.15755,285.77,0.8197,0.57227,-0.024498,339.44,-0.11005,0.11537,-0.98721,347.33 |
| 45095 | | |
| 45096 | | > view matrix models |
| 45097 | | > #40,-0.56212,0.81191,0.15755,283.72,0.8197,0.57227,-0.024498,336.84,-0.11005,0.11537,-0.98721,347.63 |
| 45098 | | |
| 45099 | | > fitmap sel inMap #34 |
| 45100 | | |
| 45101 | | Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map |
| 45102 | | relion_locres_filtered_20240326_GT.mrc (#34) using 7855 atoms |
| 45103 | | average map value = 0.008027, steps = 128 |
| 45104 | | shifted from previous position = 2.9 |
| 45105 | | rotated from previous position = 0.0265 degrees |
| 45106 | | atoms outside contour = 5047, contour level = 0.0098704 |
| 45107 | | |
| 45108 | | Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) |
| 45109 | | relative to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 45110 | | Matrix rotation and translation |
| 45111 | | -0.55131009 0.81833243 0.16244765 218.64835717 |
| 45112 | | 0.82540593 0.56334930 -0.03664183 261.20608081 |
| 45113 | | -0.12149997 0.11388425 -0.98603659 268.91792299 |
| 45114 | | Axis 0.46826242 0.88331540 0.02200455 |
| 45115 | | Axis point 52.06055817 0.00000000 128.46307893 |
| 45116 | | Rotation angle (degrees) 170.75082647 |
| 45117 | | Shift along axis 339.02958194 |
| 45118 | | |
| 45119 | | |
| 45120 | | > fitmap sel inMap #34 |
| 45121 | | |
| 45122 | | Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map |
| 45123 | | relion_locres_filtered_20240326_GT.mrc (#34) using 7855 atoms |
| 45124 | | average map value = 0.008027, steps = 84 |
| 45125 | | shifted from previous position = 0.0194 |
| 45126 | | rotated from previous position = 0.0131 degrees |
| 45127 | | atoms outside contour = 5049, contour level = 0.0098704 |
| 45128 | | |
| 45129 | | Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) |
| 45130 | | relative to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 45131 | | Matrix rotation and translation |
| 45132 | | -0.55143936 0.81821808 0.16258478 218.65494305 |
| 45133 | | 0.82531597 0.56348672 -0.03655513 261.19084196 |
| 45134 | | -0.12152443 0.11402588 -0.98601720 268.91027226 |
| 45135 | | Axis 0.46818717 0.88335369 0.02206879 |
| 45136 | | Axis point 52.08652545 0.00000000 128.44728030 |
| 45137 | | Rotation angle (degrees) 170.74592104 |
| 45138 | | Shift along axis 339.02985803 |
| 45139 | | |
| 45140 | | |
| 45141 | | > fitmap sel inMap #34 |
| 45142 | | |
| 45143 | | Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map |
| 45144 | | relion_locres_filtered_20240326_GT.mrc (#34) using 7855 atoms |
| 45145 | | average map value = 0.008027, steps = 104 |
| 45146 | | shifted from previous position = 0.0107 |
| 45147 | | rotated from previous position = 0.0337 degrees |
| 45148 | | atoms outside contour = 5045, contour level = 0.0098704 |
| 45149 | | |
| 45150 | | Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) |
| 45151 | | relative to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 45152 | | Matrix rotation and translation |
| 45153 | | -0.55110129 0.81836999 0.16296607 218.65986733 |
| 45154 | | 0.82553973 0.56317113 -0.03636548 261.18645049 |
| 45155 | | -0.12153820 0.11449390 -0.98596127 268.92250550 |
| 45156 | | Axis 0.46835240 0.88326133 0.02225891 |
| 45157 | | Axis point 52.07542258 0.00000000 128.42422789 |
| 45158 | | Rotation angle (degrees) 170.73196224 |
| 45159 | | Shift along axis 339.09168542 |
| 45160 | | |
| 45161 | | |
| 45162 | | > show #!4 models |
| 45163 | | |
| 45164 | | > fitmap #4 inMap #34 |
| 45165 | | |
| 45166 | | Fit molecule CopB_Q9JIF7.pdb (#4) to map |
| 45167 | | relion_locres_filtered_20240326_GT.mrc (#34) using 7211 atoms |
| 45168 | | average map value = 0.009133, steps = 44 |
| 45169 | | shifted from previous position = 0.0217 |
| 45170 | | rotated from previous position = 0.00877 degrees |
| 45171 | | atoms outside contour = 4184, contour level = 0.0098704 |
| 45172 | | |
| 45173 | | Position of CopB_Q9JIF7.pdb (#4) relative to |
| 45174 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 45175 | | Matrix rotation and translation |
| 45176 | | -0.02212550 -0.73061751 0.68242839 220.16058213 |
| 45177 | | -0.01331212 0.68275028 0.73053052 241.09652572 |
| 45178 | | -0.99966657 0.00707878 -0.02483226 272.96568751 |
| 45179 | | Axis -0.36787702 0.85534950 0.36475159 |
| 45180 | | Axis point 254.78423417 0.00000000 -62.18356583 |
| 45181 | | Rotation angle (degrees) 100.49232066 |
| 45182 | | Shift along axis 224.79444223 |
| 45183 | | |
| 45184 | | |
| 45185 | | > hide #!4 models |
| 45186 | | |
| 45187 | | > show #!4 models |
| 45188 | | |
| 45189 | | > hide #!4 models |
| 45190 | | |
| 45191 | | > show #!4 models |
| 45192 | | |
| 45193 | | > hide #!4 models |
| 45194 | | |
| 45195 | | > show #!4 models |
| 45196 | | |
| 45197 | | > hide #!4 models |
| 45198 | | |
| 45199 | | > show #!4 models |
| 45200 | | |
| 45201 | | > hide #!4 models |
| 45202 | | |
| 45203 | | > show #!4 models |
| 45204 | | |
| 45205 | | > hide #!4 models |
| 45206 | | |
| 45207 | | > show #!4 models |
| 45208 | | |
| 45209 | | > hide #!34 models |
| 45210 | | |
| 45211 | | > hide #!4 models |
| 45212 | | |
| 45213 | | > show #!4 models |
| 45214 | | |
| 45215 | | > show #11 models |
| 45216 | | |
| 45217 | | > hide #11 models |
| 45218 | | |
| 45219 | | > show #11 models |
| 45220 | | |
| 45221 | | > hide #11 models |
| 45222 | | |
| 45223 | | > hide #!4 models |
| 45224 | | |
| 45225 | | > select add #40 |
| 45226 | | |
| 45227 | | 39508 atoms, 40254 bonds, 5000 residues, 1 model selected |
| 45228 | | |
| 45229 | | > select subtract #40 |
| 45230 | | |
| 45231 | | Nothing selected |
| 45232 | | |
| 45233 | | > show #!34 models |
| 45234 | | |
| 45235 | | > show #!3 models |
| 45236 | | |
| 45237 | | > show #5 models |
| 45238 | | |
| 45239 | | > hide #5 models |
| 45240 | | |
| 45241 | | > show #39 models |
| 45242 | | |
| 45243 | | > show #38 models |
| 45244 | | |
| 45245 | | > hide #38 models |
| 45246 | | |
| 45247 | | > show #38 models |
| 45248 | | |
| 45249 | | > hide #38 models |
| 45250 | | |
| 45251 | | > show #!37 models |
| 45252 | | |
| 45253 | | > show #!36 models |
| 45254 | | |
| 45255 | | > show #!35 models |
| 45256 | | |
| 45257 | | > hide #!35 models |
| 45258 | | |
| 45259 | | > show #!35 models |
| 45260 | | |
| 45261 | | > show #!32 models |
| 45262 | | |
| 45263 | | > hide #!32 models |
| 45264 | | |
| 45265 | | > show #!32 models |
| 45266 | | |
| 45267 | | > hide #!32 models |
| 45268 | | |
| 45269 | | > show #!32 models |
| 45270 | | |
| 45271 | | > hide #!32 models |
| 45272 | | |
| 45273 | | > show #!32 models |
| 45274 | | |
| 45275 | | > show #!31 models |
| 45276 | | |
| 45277 | | > show #!30 models |
| 45278 | | |
| 45279 | | > hide #!30 models |
| 45280 | | |
| 45281 | | > show #!30 models |
| 45282 | | |
| 45283 | | > show #!29 models |
| 45284 | | |
| 45285 | | > show #28 models |
| 45286 | | |
| 45287 | | > hide #28 models |
| 45288 | | |
| 45289 | | > show #28 models |
| 45290 | | |
| 45291 | | > hide #28 models |
| 45292 | | |
| 45293 | | > hide #39 models |
| 45294 | | |
| 45295 | | > show #39 models |
| 45296 | | |
| 45297 | | > show #!27 models |
| 45298 | | |
| 45299 | | > show #!26 models |
| 45300 | | |
| 45301 | | > hide #!26 models |
| 45302 | | |
| 45303 | | > show #!26 models |
| 45304 | | |
| 45305 | | > show #!25 models |
| 45306 | | |
| 45307 | | > hide #!25 models |
| 45308 | | |
| 45309 | | > show #!25 models |
| 45310 | | |
| 45311 | | > hide #!25 models |
| 45312 | | |
| 45313 | | > show #!25.6 models |
| 45314 | | |
| 45315 | | > hide #!25.6 models |
| 45316 | | |
| 45317 | | > show #!25.6 models |
| 45318 | | |
| 45319 | | > hide #!25.6 models |
| 45320 | | |
| 45321 | | > show #!9 models |
| 45322 | | |
| 45323 | | > hide #!3 models |
| 45324 | | |
| 45325 | | > show #!3 models |
| 45326 | | |
| 45327 | | > show #24 models |
| 45328 | | |
| 45329 | | > show #11 models |
| 45330 | | |
| 45331 | | > hide #11 models |
| 45332 | | |
| 45333 | | > show #11 models |
| 45334 | | |
| 45335 | | > hide #11 models |
| 45336 | | |
| 45337 | | > show #11 models |
| 45338 | | |
| 45339 | | > hide #11 models |
| 45340 | | |
| 45341 | | > ui tool show "Side View" |
| 45342 | | |
| 45343 | | > hide #!34 models |
| 45344 | | |
| 45345 | | > show #!34 models |
| 45346 | | |
| 45347 | | > select #40/B #40/h |
| 45348 | | |
| 45349 | | 7855 atoms, 7973 bonds, 1000 residues, 1 model selected |
| 45350 | | |
| 45351 | | > view matrix models |
| 45352 | | > #40,-0.56197,0.81199,0.15769,282.69,0.8198,0.57212,-0.024475,337.55,-0.11009,0.11552,-0.98719,345.61 |
| 45353 | | |
| 45354 | | > view matrix models |
| 45355 | | > #40,-0.56197,0.81199,0.15769,283.28,0.8198,0.57212,-0.024475,338.86,-0.11009,0.11552,-0.98719,344.99 |
| 45356 | | |
| 45357 | | > view matrix models |
| 45358 | | > #40,-0.56197,0.81199,0.15769,284.14,0.8198,0.57212,-0.024475,340.07,-0.11009,0.11552,-0.98719,345.26 |
| 45359 | | |
| 45360 | | > fitmap sel inMap #34 |
| 45361 | | |
| 45362 | | Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map |
| 45363 | | relion_locres_filtered_20240326_GT.mrc (#34) using 7855 atoms |
| 45364 | | average map value = 0.008027, steps = 92 |
| 45365 | | shifted from previous position = 4.57 |
| 45366 | | rotated from previous position = 0.022 degrees |
| 45367 | | atoms outside contour = 5048, contour level = 0.0098704 |
| 45368 | | |
| 45369 | | Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) |
| 45370 | | relative to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 45371 | | Matrix rotation and translation |
| 45372 | | -0.55110014 0.81840479 0.16279514 218.64168819 |
| 45373 | | 0.82551278 0.56318841 -0.03670801 261.19751669 |
| 45374 | | -0.12172635 0.11415968 -0.98597681 268.91351797 |
| 45375 | | Axis 0.46835241 0.88326616 0.02206600 |
| 45376 | | Axis point 52.06701893 0.00000000 128.44776774 |
| 45377 | | Rotation angle (degrees) 170.73144763 |
| 45378 | | Shift along axis 339.04213420 |
| 45379 | | |
| 45380 | | |
| 45381 | | > fitmap sel inMap #34 |
| 45382 | | |
| 45383 | | Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map |
| 45384 | | relion_locres_filtered_20240326_GT.mrc (#34) using 7855 atoms |
| 45385 | | average map value = 0.008027, steps = 72 |
| 45386 | | shifted from previous position = 0.0174 |
| 45387 | | rotated from previous position = 0.0142 degrees |
| 45388 | | atoms outside contour = 5048, contour level = 0.0098704 |
| 45389 | | |
| 45390 | | Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) |
| 45391 | | relative to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 45392 | | Matrix rotation and translation |
| 45393 | | -0.55119683 0.81835465 0.16271979 218.65690501 |
| 45394 | | 0.82548023 0.56325066 -0.03648423 261.19361936 |
| 45395 | | -0.12150907 0.11421198 -0.98599756 268.91895596 |
| 45396 | | Axis 0.46831203 0.88328562 0.02214385 |
| 45397 | | Axis point 52.06914221 0.00000000 128.44120503 |
| 45398 | | Rotation angle (degrees) 170.74126999 |
| 45399 | | Shift along axis 339.06312999 |
| 45400 | | |
| 45401 | | |
| 45402 | | > hide #!34 models |
| 45403 | | |
| 45404 | | > show #!34 models |
| 45405 | | |
| 45406 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 45407 | | > dataset/Chimera sessions/20240521_leaf_fitting_v27.cxs" |
| 45408 | | |
| 45409 | | > hide #!37 models |
| 45410 | | |
| 45411 | | > hide #!36 models |
| 45412 | | |
| 45413 | | > hide #!35 models |
| 45414 | | |
| 45415 | | > hide #39 models |
| 45416 | | |
| 45417 | | > hide #!32 models |
| 45418 | | |
| 45419 | | > hide #!31 models |
| 45420 | | |
| 45421 | | > hide #!30 models |
| 45422 | | |
| 45423 | | > hide #!29 models |
| 45424 | | |
| 45425 | | > hide #!27 models |
| 45426 | | |
| 45427 | | > hide #!26 models |
| 45428 | | |
| 45429 | | > hide #!25 models |
| 45430 | | |
| 45431 | | > hide #24 models |
| 45432 | | |
| 45433 | | > hide #!9 models |
| 45434 | | |
| 45435 | | > hide #!3 models |
| 45436 | | |
| 45437 | | > view matrix models |
| 45438 | | > #40,-0.56206,0.81197,0.15744,283.54,0.81974,0.57221,-0.024597,339.16,-0.11006,0.11524,-0.98722,345.42 |
| 45439 | | |
| 45440 | | > view matrix models |
| 45441 | | > #40,-0.56206,0.81197,0.15744,283.87,0.81974,0.57221,-0.024597,340.09,-0.11006,0.11524,-0.98722,345.18 |
| 45442 | | |
| 45443 | | > view matrix models |
| 45444 | | > #40,-0.56206,0.81197,0.15744,283.79,0.81974,0.57221,-0.024597,340.89,-0.11006,0.11524,-0.98722,345.03 |
| 45445 | | |
| 45446 | | > view matrix models |
| 45447 | | > #40,-0.56206,0.81197,0.15744,283.46,0.81974,0.57221,-0.024597,341.23,-0.11006,0.11524,-0.98722,346.54 |
| 45448 | | |
| 45449 | | > fitmap sel inMap #34 |
| 45450 | | |
| 45451 | | Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map |
| 45452 | | relion_locres_filtered_20240326_GT.mrc (#34) using 7855 atoms |
| 45453 | | average map value = 0.008027, steps = 108 |
| 45454 | | shifted from previous position = 5.26 |
| 45455 | | rotated from previous position = 0.0235 degrees |
| 45456 | | atoms outside contour = 5046, contour level = 0.0098704 |
| 45457 | | |
| 45458 | | Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) |
| 45459 | | relative to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 45460 | | Matrix rotation and translation |
| 45461 | | -0.55145473 0.81819682 0.16263963 218.63191357 |
| 45462 | | 0.82528315 0.56352552 -0.03669766 261.19416657 |
| 45463 | | -0.12167749 0.11398665 -0.98600286 268.91645801 |
| 45464 | | Axis 0.46817099 0.88336356 0.02201698 |
| 45465 | | Axis point 52.08701783 0.00000000 128.45637404 |
| 45466 | | Rotation angle (degrees) 170.73919393 |
| 45467 | | Shift along axis 339.00725471 |
| 45468 | | |
| 45469 | | |
| 45470 | | > hide #!34 models |
| 45471 | | |
| 45472 | | > ui mousemode right select |
| 45473 | | |
| 45474 | | > select clear |
| 45475 | | |
| 45476 | | > ui mousemode right select |
| 45477 | | |
| 45478 | | Drag select of 148 residues |
| 45479 | | |
| 45480 | | > select up |
| 45481 | | |
| 45482 | | 1263 atoms, 1277 bonds, 164 residues, 1 model selected |
| 45483 | | |
| 45484 | | > select up |
| 45485 | | |
| 45486 | | 7855 atoms, 7973 bonds, 1000 residues, 1 model selected |
| 45487 | | |
| 45488 | | > select down |
| 45489 | | |
| 45490 | | 1263 atoms, 1277 bonds, 164 residues, 1 model selected |
| 45491 | | |
| 45492 | | > select clear |
| 45493 | | |
| 45494 | | Drag select of 154 residues |
| 45495 | | |
| 45496 | | > select up |
| 45497 | | |
| 45498 | | 1311 atoms, 1327 bonds, 171 residues, 1 model selected |
| 45499 | | |
| 45500 | | > show #!34 models |
| 45501 | | |
| 45502 | | > fitmap sel inMap #34 |
| 45503 | | |
| 45504 | | Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map |
| 45505 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1311 atoms |
| 45506 | | average map value = 0.007817, steps = 64 |
| 45507 | | shifted from previous position = 6.37 |
| 45508 | | rotated from previous position = 3.82 degrees |
| 45509 | | atoms outside contour = 825, contour level = 0.0098704 |
| 45510 | | |
| 45511 | | Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) |
| 45512 | | relative to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 45513 | | Matrix rotation and translation |
| 45514 | | -0.49959872 0.84635064 0.18463943 219.53809976 |
| 45515 | | 0.85843903 0.51228436 -0.02543959 267.69551574 |
| 45516 | | -0.11611871 0.14579210 -0.98247703 270.53710887 |
| 45517 | | Axis 0.49446431 0.86849670 0.03490754 |
| 45518 | | Axis point 46.53717373 0.00000000 127.56693591 |
| 45519 | | Rotation angle (degrees) 170.02905866 |
| 45520 | | Shift along axis 350.49021168 |
| 45521 | | |
| 45522 | | |
| 45523 | | > hide #!34 models |
| 45524 | | |
| 45525 | | > surface sel |
| 45526 | | |
| 45527 | | > show #!34 models |
| 45528 | | |
| 45529 | | > surface hidePatches (#!40 & sel) |
| 45530 | | |
| 45531 | | > hide #!34 models |
| 45532 | | |
| 45533 | | > ui mousemode right select |
| 45534 | | |
| 45535 | | > select clear |
| 45536 | | |
| 45537 | | Drag select of 78 residues |
| 45538 | | |
| 45539 | | > select up |
| 45540 | | |
| 45541 | | 928 atoms, 935 bonds, 119 residues, 2 models selected |
| 45542 | | |
| 45543 | | > select up |
| 45544 | | |
| 45545 | | 7507 atoms, 7626 bonds, 953 residues, 2 models selected |
| 45546 | | |
| 45547 | | > select down |
| 45548 | | |
| 45549 | | 928 atoms, 935 bonds, 119 residues, 2 models selected |
| 45550 | | |
| 45551 | | > select clear |
| 45552 | | |
| 45553 | | Drag select of 118 residues |
| 45554 | | |
| 45555 | | > select down |
| 45556 | | |
| 45557 | | 921 atoms, 118 residues, 2 models selected |
| 45558 | | |
| 45559 | | > select up |
| 45560 | | |
| 45561 | | 1380 atoms, 1394 bonds, 175 residues, 2 models selected |
| 45562 | | |
| 45563 | | > select up |
| 45564 | | |
| 45565 | | 7507 atoms, 7626 bonds, 953 residues, 2 models selected |
| 45566 | | |
| 45567 | | > select down |
| 45568 | | |
| 45569 | | 1380 atoms, 1394 bonds, 175 residues, 2 models selected |
| 45570 | | |
| 45571 | | > ui mousemode right select |
| 45572 | | |
| 45573 | | Drag select of 272 residues |
| 45574 | | |
| 45575 | | > select up |
| 45576 | | |
| 45577 | | 2962 atoms, 2997 bonds, 372 residues, 2 models selected |
| 45578 | | |
| 45579 | | > select up |
| 45580 | | |
| 45581 | | 7507 atoms, 7626 bonds, 953 residues, 2 models selected |
| 45582 | | |
| 45583 | | > select down |
| 45584 | | |
| 45585 | | 2962 atoms, 2997 bonds, 372 residues, 2 models selected |
| 45586 | | |
| 45587 | | > cartoon hide (#!40 & sel) |
| 45588 | | |
| 45589 | | Drag select of 48 residues |
| 45590 | | |
| 45591 | | > select up |
| 45592 | | |
| 45593 | | 652 atoms, 656 bonds, 84 residues, 2 models selected |
| 45594 | | |
| 45595 | | > cartoon hide (#!40 & sel) |
| 45596 | | |
| 45597 | | Drag select of 29 residues |
| 45598 | | |
| 45599 | | > select up |
| 45600 | | |
| 45601 | | 436 atoms, 439 bonds, 54 residues, 2 models selected |
| 45602 | | |
| 45603 | | > cartoon hide (#!40 & sel) |
| 45604 | | |
| 45605 | | Drag select of 3 residues |
| 45606 | | |
| 45607 | | > cartoon hide (#!40 & sel) |
| 45608 | | |
| 45609 | | Drag select of 7 residues |
| 45610 | | |
| 45611 | | > select up |
| 45612 | | |
| 45613 | | 92 atoms, 92 bonds, 12 residues, 2 models selected |
| 45614 | | |
| 45615 | | > cartoon hide (#!40 & sel) |
| 45616 | | |
| 45617 | | Drag select of 8 residues |
| 45618 | | |
| 45619 | | > select up |
| 45620 | | |
| 45621 | | 7507 atoms, 7626 bonds, 953 residues, 2 models selected |
| 45622 | | |
| 45623 | | > select down |
| 45624 | | |
| 45625 | | 65 atoms, 8 residues, 2 models selected |
| 45626 | | Drag select of 9 residues |
| 45627 | | Drag select of 10 residues |
| 45628 | | |
| 45629 | | > cartoon hide (#!40 & sel) |
| 45630 | | |
| 45631 | | Drag select of 267 residues |
| 45632 | | |
| 45633 | | > select up |
| 45634 | | |
| 45635 | | 2188 atoms, 2221 bonds, 280 residues, 2 models selected |
| 45636 | | |
| 45637 | | > cartoon hide (#!40 & sel) |
| 45638 | | |
| 45639 | | Drag select of 2 residues |
| 45640 | | |
| 45641 | | > cartoon hide (#!40 & sel) |
| 45642 | | |
| 45643 | | Drag select of 1 residues |
| 45644 | | |
| 45645 | | > select up |
| 45646 | | |
| 45647 | | 39 atoms, 38 bonds, 6 residues, 2 models selected |
| 45648 | | |
| 45649 | | > cartoon hide (#!40 & sel) |
| 45650 | | |
| 45651 | | Drag select of 2 residues |
| 45652 | | |
| 45653 | | > cartoon hide (#!40 & sel) |
| 45654 | | |
| 45655 | | > show #!34 models |
| 45656 | | |
| 45657 | | > show #!4 models |
| 45658 | | |
| 45659 | | > hide #!34 models |
| 45660 | | |
| 45661 | | > hide #!4 models |
| 45662 | | |
| 45663 | | Drag select of 50 residues |
| 45664 | | |
| 45665 | | > select up |
| 45666 | | |
| 45667 | | 477 atoms, 484 bonds, 62 residues, 2 models selected |
| 45668 | | |
| 45669 | | > select up |
| 45670 | | |
| 45671 | | 7507 atoms, 7626 bonds, 953 residues, 2 models selected |
| 45672 | | |
| 45673 | | > show #!34 models |
| 45674 | | |
| 45675 | | > fitmap sel inMap #34 |
| 45676 | | |
| 45677 | | Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map |
| 45678 | | relion_locres_filtered_20240326_GT.mrc (#34) using 7507 atoms |
| 45679 | | average map value = 0.008297, steps = 84 |
| 45680 | | shifted from previous position = 6.62 |
| 45681 | | rotated from previous position = 3.71 degrees |
| 45682 | | atoms outside contour = 4721, contour level = 0.0098704 |
| 45683 | | |
| 45684 | | Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) |
| 45685 | | relative to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 45686 | | Matrix rotation and translation |
| 45687 | | -0.54880618 0.81993615 0.16283888 218.74247183 |
| 45688 | | 0.82669165 0.56124221 -0.03985101 261.18604987 |
| 45689 | | -0.12406733 0.11274707 -0.98584756 268.81795879 |
| 45690 | | Axis 0.46948367 0.88269650 0.02078400 |
| 45691 | | Axis point 52.04192904 0.00000000 128.56927986 |
| 45692 | | Rotation angle (degrees) 170.64698297 |
| 45693 | | Shift along axis 338.83114217 |
| 45694 | | |
| 45695 | | |
| 45696 | | > select add #40 |
| 45697 | | |
| 45698 | | 39508 atoms, 40254 bonds, 5000 residues, 2 models selected |
| 45699 | | |
| 45700 | | > select subtract #40 |
| 45701 | | |
| 45702 | | 2 models selected |
| 45703 | | |
| 45704 | | > ui tool show Matchmaker |
| 45705 | | |
| 45706 | | > matchmaker #!40 to #4 |
| 45707 | | |
| 45708 | | Parameters |
| 45709 | | --- |
| 45710 | | Chain pairing | bb |
| 45711 | | Alignment algorithm | Needleman-Wunsch |
| 45712 | | Similarity matrix | BLOSUM-62 |
| 45713 | | SS fraction | 0.3 |
| 45714 | | Gap open (HH/SS/other) | 18/18/6 |
| 45715 | | Gap extend | 1 |
| 45716 | | SS matrix | | | H | S | O |
| 45717 | | ---|---|---|--- |
| 45718 | | H | 6 | -9 | -6 |
| 45719 | | S | | 6 | -6 |
| 45720 | | O | | | 4 |
| 45721 | | Iteration cutoff | 2 |
| 45722 | | |
| 45723 | | Matchmaker CopB_Q9JIF7.pdb, chain A (#4) with |
| 45724 | | fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif, chain B (#40), sequence |
| 45725 | | alignment score = 4735.7 |
| 45726 | | RMSD between 278 pruned atom pairs is 1.072 angstroms; (across all 914 pairs: |
| 45727 | | 6.141) |
| 45728 | | |
| 45729 | | |
| 45730 | | > undo |
| 45731 | | |
| 45732 | | [Repeated 2 time(s)]Drag select of 172 residues |
| 45733 | | |
| 45734 | | > fitmap sel inMap #34 |
| 45735 | | |
| 45736 | | Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map |
| 45737 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1325 atoms |
| 45738 | | average map value = 0.007953, steps = 76 |
| 45739 | | shifted from previous position = 5.45 |
| 45740 | | rotated from previous position = 2.57 degrees |
| 45741 | | atoms outside contour = 827, contour level = 0.0098704 |
| 45742 | | |
| 45743 | | Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) |
| 45744 | | relative to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 45745 | | Matrix rotation and translation |
| 45746 | | -0.50508390 0.84461041 0.17754866 219.44757134 |
| 45747 | | 0.85545379 0.51718857 -0.02673585 267.71204628 |
| 45748 | | -0.11440752 0.13838082 -0.98374879 270.68842562 |
| 45749 | | Axis 0.49202156 0.86998319 0.03231156 |
| 45750 | | Axis point 46.61766015 0.00000000 128.06969832 |
| 45751 | | Rotation angle (degrees) 170.34040927 |
| 45752 | | Shift along axis 349.62428175 |
| 45753 | | |
| 45754 | | |
| 45755 | | > show #!34 models |
| 45756 | | |
| 45757 | | > show #!4 models |
| 45758 | | |
| 45759 | | > select add #40 |
| 45760 | | |
| 45761 | | 39508 atoms, 40254 bonds, 5000 residues, 3 models selected |
| 45762 | | |
| 45763 | | > select subtract #40 |
| 45764 | | |
| 45765 | | 2 models selected |
| 45766 | | |
| 45767 | | > show #39 models |
| 45768 | | |
| 45769 | | > show #38 models |
| 45770 | | |
| 45771 | | > hide #38 models |
| 45772 | | |
| 45773 | | > show #!37 models |
| 45774 | | |
| 45775 | | > show #!36 models |
| 45776 | | |
| 45777 | | > show #!35 models |
| 45778 | | |
| 45779 | | > show #!32 models |
| 45780 | | |
| 45781 | | > show #!31 models |
| 45782 | | |
| 45783 | | > show #!30 models |
| 45784 | | |
| 45785 | | > show #!29 models |
| 45786 | | |
| 45787 | | > show #28 models |
| 45788 | | |
| 45789 | | > hide #28 models |
| 45790 | | |
| 45791 | | > show #!27 models |
| 45792 | | |
| 45793 | | > show #!26 models |
| 45794 | | |
| 45795 | | > show #!25.6 models |
| 45796 | | |
| 45797 | | > hide #!25.6 models |
| 45798 | | |
| 45799 | | > show #24 models |
| 45800 | | |
| 45801 | | > show #!9 models |
| 45802 | | |
| 45803 | | > show #!3 models |
| 45804 | | |
| 45805 | | > show #!2 models |
| 45806 | | |
| 45807 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 45808 | | > dataset/Chimera sessions/20240521_leaf_fitting_v28.cxs" |
| 45809 | | |
| 45810 | | > hide #!2 models |
| 45811 | | |
| 45812 | | > hide #!34 models |
| 45813 | | |
| 45814 | | > select #4/A:625 |
| 45815 | | |
| 45816 | | 7 atoms, 7 bonds, 1 residue, 1 model selected |
| 45817 | | |
| 45818 | | > select clear |
| 45819 | | |
| 45820 | | > select #4/A:661 |
| 45821 | | |
| 45822 | | 11 atoms, 10 bonds, 1 residue, 1 model selected |
| 45823 | | |
| 45824 | | > show #!34 models |
| 45825 | | |
| 45826 | | > show #!2 models |
| 45827 | | |
| 45828 | | > hide #24 models |
| 45829 | | |
| 45830 | | > show #24 models |
| 45831 | | |
| 45832 | | > volume #34 level 0.006418 |
| 45833 | | |
| 45834 | | > hide #!34 models |
| 45835 | | |
| 45836 | | > select add #24 |
| 45837 | | |
| 45838 | | 1945 atoms, 1960 bonds, 255 residues, 2 models selected |
| 45839 | | |
| 45840 | | > show sel atoms |
| 45841 | | |
| 45842 | | [Repeated 1 time(s)] |
| 45843 | | |
| 45844 | | > style sel sphere |
| 45845 | | |
| 45846 | | Changed 1945 atom styles |
| 45847 | | |
| 45848 | | > ui tool show "Color Actions" |
| 45849 | | |
| 45850 | | > style sel stick |
| 45851 | | |
| 45852 | | Changed 1945 atom styles |
| 45853 | | |
| 45854 | | > hide sel cartoons |
| 45855 | | |
| 45856 | | > hide sel atoms |
| 45857 | | |
| 45858 | | > show sel cartoons |
| 45859 | | |
| 45860 | | > show sel atoms |
| 45861 | | |
| 45862 | | > hide sel atoms |
| 45863 | | |
| 45864 | | > select subtract #24 |
| 45865 | | |
| 45866 | | 11 atoms, 10 bonds, 1 residue, 1 model selected |
| 45867 | | |
| 45868 | | > select #24/A:83 |
| 45869 | | |
| 45870 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 45871 | | |
| 45872 | | > show sel atoms |
| 45873 | | |
| 45874 | | [Repeated 1 time(s)] |
| 45875 | | |
| 45876 | | > color sel red |
| 45877 | | |
| 45878 | | > select #24/A:159 |
| 45879 | | |
| 45880 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 45881 | | |
| 45882 | | > show sel atoms |
| 45883 | | |
| 45884 | | > color sel red |
| 45885 | | |
| 45886 | | > select clear |
| 45887 | | |
| 45888 | | > select #24/A:156 |
| 45889 | | |
| 45890 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 45891 | | |
| 45892 | | > select #24/A:154 |
| 45893 | | |
| 45894 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 45895 | | |
| 45896 | | > show sel atoms |
| 45897 | | |
| 45898 | | > color sel red |
| 45899 | | |
| 45900 | | > select #24/A:154 |
| 45901 | | |
| 45902 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 45903 | | |
| 45904 | | > color sel red |
| 45905 | | |
| 45906 | | > select clear |
| 45907 | | |
| 45908 | | > select #24/A:262 |
| 45909 | | |
| 45910 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 45911 | | |
| 45912 | | > show sel atoms |
| 45913 | | |
| 45914 | | > color sel yellow |
| 45915 | | |
| 45916 | | > select #24/A:258 |
| 45917 | | |
| 45918 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 45919 | | |
| 45920 | | > show sel atoms |
| 45921 | | |
| 45922 | | > color sel yellow |
| 45923 | | |
| 45924 | | > select #24/A:259 |
| 45925 | | |
| 45926 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 45927 | | |
| 45928 | | > color sel yellow |
| 45929 | | |
| 45930 | | > show sel atoms |
| 45931 | | |
| 45932 | | > select #24/A:75 |
| 45933 | | |
| 45934 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 45935 | | |
| 45936 | | > show sel atoms |
| 45937 | | |
| 45938 | | > color sel lime |
| 45939 | | |
| 45940 | | > select #24/A:73 |
| 45941 | | |
| 45942 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 45943 | | |
| 45944 | | > show sel atoms |
| 45945 | | |
| 45946 | | > color sel lime |
| 45947 | | |
| 45948 | | > select clear |
| 45949 | | |
| 45950 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 45951 | | > dataset/Chimera sessions/20240521_leaf_fitting_v29_mutations_labeled.cxs" |
| 45952 | | |
| 45953 | | > show #!34 models |
| 45954 | | |
| 45955 | | > hide #!2 models |
| 45956 | | |
| 45957 | | > hide #!25 models |
| 45958 | | |
| 45959 | | > show #!25 models |
| 45960 | | |
| 45961 | | > hide #!34 models |
| 45962 | | |
| 45963 | | > show #!34 models |
| 45964 | | |
| 45965 | | > hide #!34 models |
| 45966 | | |
| 45967 | | > select add #24 |
| 45968 | | |
| 45969 | | 1934 atoms, 1950 bonds, 254 residues, 1 model selected |
| 45970 | | |
| 45971 | | > surface sel |
| 45972 | | |
| 45973 | | > ui tool show "Surface Color" |
| 45974 | | |
| 45975 | | > color electrostatic #24.1 map #2 palette -10,#ff0000:0,#ffffff:10,#0000ff |
| 45976 | | |
| 45977 | | Map values for surface "3kn1_Golph3_xtal.cif_A SES surface": minimum -0.2153, |
| 45978 | | mean -0.04639, maximum 0.1938 |
| 45979 | | |
| 45980 | | > color single #24.1 |
| 45981 | | |
| 45982 | | > ui tool show "Surface Color" |
| 45983 | | |
| 45984 | | > color electrostatic #24.1 map #2 palette -10,#ff0000:0,#ffffff:10,#0000ff |
| 45985 | | |
| 45986 | | Map values for surface "3kn1_Golph3_xtal.cif_A SES surface": minimum -0.2153, |
| 45987 | | mean -0.04639, maximum 0.1938 |
| 45988 | | |
| 45989 | | > color single #24.1 |
| 45990 | | |
| 45991 | | > surface hidePatches (#!24 & sel) |
| 45992 | | |
| 45993 | | > select subtract #24 |
| 45994 | | |
| 45995 | | 1 model selected |
| 45996 | | |
| 45997 | | > show #!34 models |
| 45998 | | |
| 45999 | | > volume #34 level 0.005871 |
| 46000 | | |
| 46001 | | > hide #!34 models |
| 46002 | | |
| 46003 | | > show #!34 models |
| 46004 | | |
| 46005 | | > hide #!34 models |
| 46006 | | |
| 46007 | | > show #!34 models |
| 46008 | | |
| 46009 | | > hide #!34 models |
| 46010 | | |
| 46011 | | > show #!34 models |
| 46012 | | |
| 46013 | | > hide #!34 models |
| 46014 | | |
| 46015 | | > show #11 models |
| 46016 | | |
| 46017 | | > show #!34 models |
| 46018 | | |
| 46019 | | > hide #!34 models |
| 46020 | | |
| 46021 | | > show #!34 models |
| 46022 | | |
| 46023 | | > hide #!34 models |
| 46024 | | |
| 46025 | | > show #!34 models |
| 46026 | | |
| 46027 | | > hide #!34 models |
| 46028 | | |
| 46029 | | > show #!34 models |
| 46030 | | |
| 46031 | | > hide #!34 models |
| 46032 | | |
| 46033 | | > show #!34 models |
| 46034 | | |
| 46035 | | > hide #!34 models |
| 46036 | | |
| 46037 | | > show #!34 models |
| 46038 | | |
| 46039 | | > show #!2 models |
| 46040 | | |
| 46041 | | > hide #!2 models |
| 46042 | | |
| 46043 | | > hide #!34 models |
| 46044 | | |
| 46045 | | > show #!34 models |
| 46046 | | |
| 46047 | | > hide #!34 models |
| 46048 | | |
| 46049 | | > select #24/A:183 |
| 46050 | | |
| 46051 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 46052 | | |
| 46053 | | > select #24/A:184 |
| 46054 | | |
| 46055 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 46056 | | |
| 46057 | | > show sel atoms |
| 46058 | | |
| 46059 | | > hide sel atoms |
| 46060 | | |
| 46061 | | > select #24/A:183 |
| 46062 | | |
| 46063 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 46064 | | |
| 46065 | | > show sel atoms |
| 46066 | | |
| 46067 | | > show #!34 models |
| 46068 | | |
| 46069 | | Drag select of 1 residues, 34 relion_locres_filtered_20240326_GT.mrc |
| 46070 | | |
| 46071 | | > select add #34 |
| 46072 | | |
| 46073 | | 5 atoms, 1 residue, 4 models selected |
| 46074 | | |
| 46075 | | > select subtract #34 |
| 46076 | | |
| 46077 | | 5 atoms, 1 residue, 1 model selected |
| 46078 | | |
| 46079 | | > hide #!34 models |
| 46080 | | |
| 46081 | | > select #30/A:73 |
| 46082 | | |
| 46083 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 46084 | | |
| 46085 | | > select #30/A:74 |
| 46086 | | |
| 46087 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 46088 | | |
| 46089 | | > select #30/A:73 |
| 46090 | | |
| 46091 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 46092 | | |
| 46093 | | > select #24/A:183 |
| 46094 | | |
| 46095 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 46096 | | |
| 46097 | | > hide sel atoms |
| 46098 | | |
| 46099 | | > select #24/A:184 |
| 46100 | | |
| 46101 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 46102 | | |
| 46103 | | > select #30/A:73 |
| 46104 | | |
| 46105 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 46106 | | |
| 46107 | | > select #30/A:74 |
| 46108 | | |
| 46109 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 46110 | | |
| 46111 | | > select #30/A:96 |
| 46112 | | |
| 46113 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 46114 | | |
| 46115 | | > select #24/A:183 |
| 46116 | | |
| 46117 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 46118 | | |
| 46119 | | > select #11/A:183 |
| 46120 | | |
| 46121 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 46122 | | |
| 46123 | | > select #24/A:184 |
| 46124 | | |
| 46125 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 46126 | | |
| 46127 | | > select #11/A:182 |
| 46128 | | |
| 46129 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 46130 | | |
| 46131 | | > select #11/A:183 |
| 46132 | | |
| 46133 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 46134 | | |
| 46135 | | > select #11/A:182 |
| 46136 | | |
| 46137 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 46138 | | |
| 46139 | | > select #11/A:183 |
| 46140 | | |
| 46141 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 46142 | | |
| 46143 | | > select #24/A:183 |
| 46144 | | |
| 46145 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 46146 | | |
| 46147 | | > select #11/A:183 |
| 46148 | | |
| 46149 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 46150 | | |
| 46151 | | > select #11/A:184 |
| 46152 | | |
| 46153 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 46154 | | |
| 46155 | | > select #30/A:97 |
| 46156 | | |
| 46157 | | 12 atoms, 12 bonds, 1 residue, 1 model selected |
| 46158 | | |
| 46159 | | > select #3/A:95 |
| 46160 | | |
| 46161 | | 12 atoms, 12 bonds, 1 residue, 1 model selected |
| 46162 | | |
| 46163 | | > select #30/A:94 |
| 46164 | | |
| 46165 | | 10 atoms, 10 bonds, 1 residue, 1 model selected |
| 46166 | | |
| 46167 | | > select #30/A:95 |
| 46168 | | |
| 46169 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 46170 | | |
| 46171 | | > select #30/A:96 |
| 46172 | | |
| 46173 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 46174 | | |
| 46175 | | > select #3/A:94 |
| 46176 | | |
| 46177 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 46178 | | |
| 46179 | | > select #30/A:96 |
| 46180 | | |
| 46181 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 46182 | | |
| 46183 | | > select #3/A:94 |
| 46184 | | |
| 46185 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 46186 | | Drag select of 2 residues |
| 46187 | | |
| 46188 | | > select #30/A:97 |
| 46189 | | |
| 46190 | | 12 atoms, 12 bonds, 1 residue, 1 model selected |
| 46191 | | |
| 46192 | | > select clear |
| 46193 | | |
| 46194 | | [Repeated 2 time(s)] |
| 46195 | | |
| 46196 | | > select #3/A:321 |
| 46197 | | |
| 46198 | | 11 atoms, 10 bonds, 1 residue, 1 model selected |
| 46199 | | |
| 46200 | | > select clear |
| 46201 | | |
| 46202 | | > select #3/A:320 |
| 46203 | | |
| 46204 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 46205 | | |
| 46206 | | > show #!34 models |
| 46207 | | |
| 46208 | | > hide #!34 models |
| 46209 | | |
| 46210 | | > hide #!30 models |
| 46211 | | |
| 46212 | | > show #!34 models |
| 46213 | | |
| 46214 | | > show #!2 models |
| 46215 | | |
| 46216 | | > hide #!2 models |
| 46217 | | |
| 46218 | | > show #!2 models |
| 46219 | | |
| 46220 | | > hide #!25 models |
| 46221 | | |
| 46222 | | > show #!25 models |
| 46223 | | |
| 46224 | | > hide #!34 models |
| 46225 | | |
| 46226 | | > volume #2 level 0.1204 |
| 46227 | | |
| 46228 | | > show #!34 models |
| 46229 | | |
| 46230 | | > fitmap #2 inMap #34 |
| 46231 | | |
| 46232 | | Fit map emdb 3720 in map relion_locres_filtered_20240326_GT.mrc using 87829 |
| 46233 | | points |
| 46234 | | correlation = 0.6926, correlation about mean = 0.2583, overlap = 150.4 |
| 46235 | | steps = 48, shift = 0.101, angle = 0.106 degrees |
| 46236 | | |
| 46237 | | Position of emdb 3720 (#2) relative to relion_locres_filtered_20240326_GT.mrc |
| 46238 | | (#34) coordinates: |
| 46239 | | Matrix rotation and translation |
| 46240 | | -0.53796983 0.84155370 -0.04874257 218.00766540 |
| 46241 | | -0.84283572 -0.53799705 0.01367977 404.60666989 |
| 46242 | | -0.01471110 0.04844128 0.99871769 145.34757683 |
| 46243 | | Axis 0.02062885 -0.02019562 -0.99958321 |
| 46244 | | Axis point 220.50645392 140.27828970 0.00000000 |
| 46245 | | Rotation angle (degrees) 122.59005790 |
| 46246 | | Shift along axis -148.96103027 |
| 46247 | | |
| 46248 | | |
| 46249 | | > fitmap #2 inMap #34 |
| 46250 | | |
| 46251 | | Fit map emdb 3720 in map relion_locres_filtered_20240326_GT.mrc using 87829 |
| 46252 | | points |
| 46253 | | correlation = 0.6927, correlation about mean = 0.2585, overlap = 150.4 |
| 46254 | | steps = 44, shift = 0.0342, angle = 0.00493 degrees |
| 46255 | | |
| 46256 | | Position of emdb 3720 (#2) relative to relion_locres_filtered_20240326_GT.mrc |
| 46257 | | (#34) coordinates: |
| 46258 | | Matrix rotation and translation |
| 46259 | | -0.53792909 0.84158316 -0.04868350 217.96400146 |
| 46260 | | -0.84286283 -0.53795369 0.01371436 404.61662806 |
| 46261 | | -0.01464769 0.04841086 0.99872010 145.33292296 |
| 46262 | | Axis 0.02058960 -0.02019753 -0.99958398 |
| 46263 | | Axis point 220.49090624 140.29322173 0.00000000 |
| 46264 | | Rotation angle (degrees) 122.58711660 |
| 46265 | | Shift along axis -148.95692510 |
| 46266 | | |
| 46267 | | |
| 46268 | | > fitmap #2 inMap #34 |
| 46269 | | |
| 46270 | | Fit map emdb 3720 in map relion_locres_filtered_20240326_GT.mrc using 87829 |
| 46271 | | points |
| 46272 | | correlation = 0.6927, correlation about mean = 0.2585, overlap = 150.4 |
| 46273 | | steps = 44, shift = 0.00301, angle = 0.00163 degrees |
| 46274 | | |
| 46275 | | Position of emdb 3720 (#2) relative to relion_locres_filtered_20240326_GT.mrc |
| 46276 | | (#34) coordinates: |
| 46277 | | Matrix rotation and translation |
| 46278 | | -0.53795122 0.84156844 -0.04869343 217.96879525 |
| 46279 | | -0.84284862 -0.53797589 0.01371664 404.62013148 |
| 46280 | | -0.01465240 0.04842007 0.99871959 145.33197166 |
| 46281 | | Axis 0.02059406 -0.02020097 -0.99958382 |
| 46282 | | Axis point 220.49098314 140.29514343 0.00000000 |
| 46283 | | Rotation angle (degrees) 122.58864151 |
| 46284 | | Shift along axis -148.95634306 |
| 46285 | | |
| 46286 | | |
| 46287 | | > hide #!2 models |
| 46288 | | |
| 46289 | | > select add #3 |
| 46290 | | |
| 46291 | | 6692 atoms, 6847 bonds, 1 pseudobond, 833 residues, 2 models selected |
| 46292 | | |
| 46293 | | > select subtract #3 |
| 46294 | | |
| 46295 | | Nothing selected |
| 46296 | | |
| 46297 | | > hide #!34 models |
| 46298 | | |
| 46299 | | > show #!34 models |
| 46300 | | |
| 46301 | | > hide #!34 models |
| 46302 | | |
| 46303 | | > show #!30 models |
| 46304 | | |
| 46305 | | > show #!34 models |
| 46306 | | |
| 46307 | | > hide #!30 models |
| 46308 | | |
| 46309 | | > hide #!34 models |
| 46310 | | |
| 46311 | | > show #!2 models |
| 46312 | | |
| 46313 | | > show #!34 models |
| 46314 | | |
| 46315 | | > hide #!34 models |
| 46316 | | |
| 46317 | | > hide #!2 models |
| 46318 | | |
| 46319 | | > select #11/A:90 |
| 46320 | | |
| 46321 | | 11 atoms, 10 bonds, 1 residue, 1 model selected |
| 46322 | | |
| 46323 | | > select add #11 |
| 46324 | | |
| 46325 | | 2367 atoms, 2398 bonds, 298 residues, 1 model selected |
| 46326 | | |
| 46327 | | > select subtract #11 |
| 46328 | | |
| 46329 | | Nothing selected |
| 46330 | | |
| 46331 | | > hide #11 models |
| 46332 | | |
| 46333 | | > select #24/A:90 |
| 46334 | | |
| 46335 | | 11 atoms, 10 bonds, 1 residue, 1 model selected |
| 46336 | | |
| 46337 | | > color sel cyan |
| 46338 | | |
| 46339 | | > select #24/A:171 |
| 46340 | | |
| 46341 | | 11 atoms, 10 bonds, 1 residue, 1 model selected |
| 46342 | | |
| 46343 | | > show sel atoms |
| 46344 | | |
| 46345 | | > color sel cyan |
| 46346 | | |
| 46347 | | > select #24/A:90 |
| 46348 | | |
| 46349 | | 11 atoms, 10 bonds, 1 residue, 1 model selected |
| 46350 | | |
| 46351 | | > show sel atoms |
| 46352 | | |
| 46353 | | > select #24/A:174 |
| 46354 | | |
| 46355 | | 11 atoms, 10 bonds, 1 residue, 1 model selected |
| 46356 | | |
| 46357 | | > show sel atoms |
| 46358 | | |
| 46359 | | > color sel cyan |
| 46360 | | |
| 46361 | | > select #24/A:81 |
| 46362 | | |
| 46363 | | 14 atoms, 15 bonds, 1 residue, 1 model selected |
| 46364 | | |
| 46365 | | > show sel atoms |
| 46366 | | |
| 46367 | | > color sel cyan |
| 46368 | | |
| 46369 | | > show #!34 models |
| 46370 | | |
| 46371 | | > select clear |
| 46372 | | |
| 46373 | | > volume #34 level 0.008609 |
| 46374 | | |
| 46375 | | > volume #34 level 0.006418 |
| 46376 | | |
| 46377 | | > volume #34 level 0.005871 |
| 46378 | | |
| 46379 | | > hide #!34 models |
| 46380 | | |
| 46381 | | > show #!34 models |
| 46382 | | |
| 46383 | | > hide #!34 models |
| 46384 | | |
| 46385 | | > select #40/H:10 |
| 46386 | | |
| 46387 | | 4 atoms, 3 bonds, 1 residue, 1 model selected |
| 46388 | | |
| 46389 | | > select #40/H:11 |
| 46390 | | |
| 46391 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 46392 | | |
| 46393 | | > select #40/H:12 |
| 46394 | | |
| 46395 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 46396 | | |
| 46397 | | > select #40/H:13 |
| 46398 | | |
| 46399 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 46400 | | |
| 46401 | | > select #40/H:14 |
| 46402 | | |
| 46403 | | 11 atoms, 10 bonds, 1 residue, 1 model selected |
| 46404 | | |
| 46405 | | > select #40/B:848 |
| 46406 | | |
| 46407 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 46408 | | |
| 46409 | | > select #40/H:14 |
| 46410 | | |
| 46411 | | 11 atoms, 10 bonds, 1 residue, 1 model selected |
| 46412 | | Drag select of 3 residues |
| 46413 | | |
| 46414 | | > show sel atoms |
| 46415 | | |
| 46416 | | > hide sel atoms |
| 46417 | | |
| 46418 | | > show sel atoms |
| 46419 | | |
| 46420 | | > style sel stick |
| 46421 | | |
| 46422 | | Changed 29 atom styles |
| 46423 | | |
| 46424 | | > select clear |
| 46425 | | |
| 46426 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 46427 | | > dataset/Chimera |
| 46428 | | > sessions/20240521_leaf_fitting_v30_mutations_interactions_labeled.cxs" |
| 46429 | | |
| 46430 | | > show #!34 models |
| 46431 | | |
| 46432 | | > hide #!34 models |
| 46433 | | |
| 46434 | | > show #!34 models |
| 46435 | | |
| 46436 | | > hide #!34 models |
| 46437 | | |
| 46438 | | > select #24/A:184 |
| 46439 | | |
| 46440 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 46441 | | |
| 46442 | | > show sel atoms |
| 46443 | | |
| 46444 | | > show #!34 models |
| 46445 | | |
| 46446 | | > hide #!34 models |
| 46447 | | |
| 46448 | | > show #!34 models |
| 46449 | | |
| 46450 | | > hide #!34 models |
| 46451 | | |
| 46452 | | > select #24/A:183 |
| 46453 | | |
| 46454 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 46455 | | |
| 46456 | | > show sel atoms |
| 46457 | | |
| 46458 | | > select #24/A:182 |
| 46459 | | |
| 46460 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 46461 | | |
| 46462 | | > show sel atoms |
| 46463 | | |
| 46464 | | > show #!34 models |
| 46465 | | |
| 46466 | | > select #34 |
| 46467 | | |
| 46468 | | 2 models selected |
| 46469 | | |
| 46470 | | > hide #!34 models |
| 46471 | | |
| 46472 | | > select #3/A:13 |
| 46473 | | |
| 46474 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 46475 | | |
| 46476 | | > show #!34 models |
| 46477 | | |
| 46478 | | > hide #!34 models |
| 46479 | | |
| 46480 | | > show #!34 models |
| 46481 | | |
| 46482 | | > hide #!34 models |
| 46483 | | |
| 46484 | | > show #!34 models |
| 46485 | | |
| 46486 | | > hide #!34 models |
| 46487 | | |
| 46488 | | > select #24/A:184 |
| 46489 | | |
| 46490 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 46491 | | |
| 46492 | | > show sel atoms |
| 46493 | | |
| 46494 | | [Repeated 1 time(s)] |
| 46495 | | |
| 46496 | | > select #24/A:185 |
| 46497 | | |
| 46498 | | 4 atoms, 3 bonds, 1 residue, 1 model selected |
| 46499 | | |
| 46500 | | > show sel atoms |
| 46501 | | |
| 46502 | | [Repeated 2 time(s)] |
| 46503 | | |
| 46504 | | > select #3/A:269 |
| 46505 | | |
| 46506 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 46507 | | |
| 46508 | | > show sel atoms |
| 46509 | | |
| 46510 | | > show #!34 models |
| 46511 | | |
| 46512 | | > hide #!34 models |
| 46513 | | |
| 46514 | | > select clear |
| 46515 | | |
| 46516 | | > select #3/A:293 |
| 46517 | | |
| 46518 | | 11 atoms, 10 bonds, 1 residue, 1 model selected |
| 46519 | | |
| 46520 | | > show sel atoms |
| 46521 | | |
| 46522 | | > show #!34 models |
| 46523 | | |
| 46524 | | > select #3/A:269@CD |
| 46525 | | |
| 46526 | | 1 atom, 1 residue, 1 model selected |
| 46527 | | |
| 46528 | | > hide sel atoms |
| 46529 | | |
| 46530 | | > hide #!34 models |
| 46531 | | |
| 46532 | | > select #3/A:269 |
| 46533 | | |
| 46534 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 46535 | | |
| 46536 | | > hide sel atoms |
| 46537 | | |
| 46538 | | > select #3/A:293 |
| 46539 | | |
| 46540 | | 11 atoms, 10 bonds, 1 residue, 1 model selected |
| 46541 | | |
| 46542 | | > select #24/A:185 |
| 46543 | | |
| 46544 | | 4 atoms, 3 bonds, 1 residue, 1 model selected |
| 46545 | | |
| 46546 | | > show sel atoms |
| 46547 | | |
| 46548 | | [Repeated 1 time(s)] |
| 46549 | | |
| 46550 | | > select #24/A:184 |
| 46551 | | |
| 46552 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 46553 | | |
| 46554 | | > select #24/A:183 |
| 46555 | | |
| 46556 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 46557 | | |
| 46558 | | > show #!34 models |
| 46559 | | |
| 46560 | | > show #!2 models |
| 46561 | | |
| 46562 | | > hide #!2 models |
| 46563 | | |
| 46564 | | > hide #!34 models |
| 46565 | | |
| 46566 | | > select #3/A:290 |
| 46567 | | |
| 46568 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 46569 | | |
| 46570 | | > select #3/A:291 |
| 46571 | | |
| 46572 | | 10 atoms, 10 bonds, 1 residue, 1 model selected |
| 46573 | | |
| 46574 | | > select #3/A:290 |
| 46575 | | |
| 46576 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 46577 | | |
| 46578 | | > select #3/A:291 |
| 46579 | | |
| 46580 | | 10 atoms, 10 bonds, 1 residue, 1 model selected |
| 46581 | | |
| 46582 | | > select #3/A:290 |
| 46583 | | |
| 46584 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 46585 | | |
| 46586 | | > show sel atoms |
| 46587 | | |
| 46588 | | > select #3/A:291 |
| 46589 | | |
| 46590 | | 10 atoms, 10 bonds, 1 residue, 1 model selected |
| 46591 | | |
| 46592 | | > show sel atoms |
| 46593 | | |
| 46594 | | > select #3/A:290 |
| 46595 | | |
| 46596 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 46597 | | |
| 46598 | | > show #!30 models |
| 46599 | | |
| 46600 | | > select #30/A:298 |
| 46601 | | |
| 46602 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 46603 | | |
| 46604 | | > show sel atoms |
| 46605 | | |
| 46606 | | > select clear |
| 46607 | | |
| 46608 | | > select #30/A:297 |
| 46609 | | |
| 46610 | | 5 atoms, 4 bonds, 1 residue, 1 model selected |
| 46611 | | |
| 46612 | | > show sel atoms |
| 46613 | | |
| 46614 | | > show #!34 models |
| 46615 | | |
| 46616 | | > select add #30 |
| 46617 | | |
| 46618 | | 2737 atoms, 2622 bonds, 1 pseudobond, 505 residues, 2 models selected |
| 46619 | | |
| 46620 | | > select subtract #30 |
| 46621 | | |
| 46622 | | Nothing selected |
| 46623 | | |
| 46624 | | > hide #!34 models |
| 46625 | | |
| 46626 | | > hide #!30 models |
| 46627 | | |
| 46628 | | > select #3/A:291@CE1 |
| 46629 | | |
| 46630 | | 1 atom, 1 residue, 1 model selected |
| 46631 | | |
| 46632 | | > show #!34 models |
| 46633 | | |
| 46634 | | > volume #34 level 0.007331 |
| 46635 | | |
| 46636 | | > hide #!34 models |
| 46637 | | |
| 46638 | | > show #!34 models |
| 46639 | | |
| 46640 | | > hide #!34 models |
| 46641 | | |
| 46642 | | > hide #39 models |
| 46643 | | |
| 46644 | | > show #39 models |
| 46645 | | |
| 46646 | | > hide #26.3 models |
| 46647 | | |
| 46648 | | > show #!34 models |
| 46649 | | |
| 46650 | | > hide #!34 models |
| 46651 | | |
| 46652 | | > show #!34 models |
| 46653 | | |
| 46654 | | > hide #!34 models |
| 46655 | | |
| 46656 | | > show #!34 models |
| 46657 | | |
| 46658 | | > hide #!34 models |
| 46659 | | |
| 46660 | | > select #31.1/A:107 |
| 46661 | | |
| 46662 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 46663 | | |
| 46664 | | > show sel atoms |
| 46665 | | |
| 46666 | | > select #31.1/A:107 |
| 46667 | | |
| 46668 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 46669 | | |
| 46670 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 46671 | | > dataset/Chimera |
| 46672 | | > sessions/20240521_leaf_fitting_v31_mutations_interactions_labeled.cxs" |
| 46673 | | |
| 46674 | | ——— End of log from Tue May 21 23:56:29 2024 ——— |
| 46675 | | |
| 46676 | | opened ChimeraX session |
| 46677 | | |
| 46678 | | > show #!34 models |
| 46679 | | |
| 46680 | | > hide #!40 models |
| 46681 | | |
| 46682 | | > show #!40 models |
| 46683 | | |
| 46684 | | > hide #!40 models |
| 46685 | | |
| 46686 | | > show #!40 models |
| 46687 | | |
| 46688 | | > hide #!40 models |
| 46689 | | |
| 46690 | | > show #!40 models |
| 46691 | | |
| 46692 | | > hide #!40 models |
| 46693 | | |
| 46694 | | > show #!40 models |
| 46695 | | |
| 46696 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 46697 | | > dataset/Chimera sessions/20240522_leaf_fitting_v32_labelled.cxs" |
| 46698 | | |
| 46699 | | ——— End of log from Mon Jun 3 13:56:09 2024 ——— |
| 46700 | | |
| 46701 | | opened ChimeraX session |
| 46702 | | |
| 46703 | | > hide #!4 models |
| 46704 | | |
| 46705 | | > show #!4 models |
| 46706 | | |
| 46707 | | > hide #!4 models |
| 46708 | | |
| 46709 | | > show #!4 models |
| 46710 | | |
| 46711 | | > hide #!9 models |
| 46712 | | |
| 46713 | | > show #!9 models |
| 46714 | | |
| 46715 | | > hide #!24 models |
| 46716 | | |
| 46717 | | > show #!24 models |
| 46718 | | |
| 46719 | | > hide #!25 models |
| 46720 | | |
| 46721 | | > show #!25 models |
| 46722 | | |
| 46723 | | > hide #!25 models |
| 46724 | | |
| 46725 | | > show #!25 models |
| 46726 | | |
| 46727 | | > hide #!25 models |
| 46728 | | |
| 46729 | | > hide #!26.1 models |
| 46730 | | |
| 46731 | | > show #!26.1 models |
| 46732 | | |
| 46733 | | > hide #!26.1 models |
| 46734 | | |
| 46735 | | > show #!26.1 models |
| 46736 | | |
| 46737 | | > hide #!26.1 models |
| 46738 | | |
| 46739 | | > show #!26.1 models |
| 46740 | | |
| 46741 | | > hide #!26.2 models |
| 46742 | | |
| 46743 | | > show #!26.2 models |
| 46744 | | |
| 46745 | | > hide #!26.2 models |
| 46746 | | |
| 46747 | | > show #!26.2 models |
| 46748 | | |
| 46749 | | > hide #!26.2 models |
| 46750 | | |
| 46751 | | > show #!26.2 models |
| 46752 | | |
| 46753 | | > hide #!9 models |
| 46754 | | |
| 46755 | | > show #!9 models |
| 46756 | | |
| 46757 | | > hide #!9 models |
| 46758 | | |
| 46759 | | > show #!9 models |
| 46760 | | |
| 46761 | | > hide #!9 models |
| 46762 | | |
| 46763 | | > show #!9 models |
| 46764 | | |
| 46765 | | > hide #!24 models |
| 46766 | | |
| 46767 | | > show #!24 models |
| 46768 | | |
| 46769 | | > show #26.3 models |
| 46770 | | |
| 46771 | | > hide #31.1 models |
| 46772 | | |
| 46773 | | > hide #26.3 models |
| 46774 | | |
| 46775 | | > show #26.3 models |
| 46776 | | |
| 46777 | | > ui tool show "Fit in Map" |
| 46778 | | |
| 46779 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 46780 | | QTBUG which explains how to reproduce. |
| 46781 | | |
| 46782 | | [Repeated 1 time(s)] |
| 46783 | | |
| 46784 | | > fitmap #26.3 inMap #34 |
| 46785 | | |
| 46786 | | Fit molecule 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#26.3) to map |
| 46787 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1128 atoms |
| 46788 | | average map value = 0.01093, steps = 60 |
| 46789 | | shifted from previous position = 0.0301 |
| 46790 | | rotated from previous position = 0.115 degrees |
| 46791 | | atoms outside contour = 396, contour level = 0.0073311 |
| 46792 | | |
| 46793 | | Position of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#26.3) relative to |
| 46794 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 46795 | | Matrix rotation and translation |
| 46796 | | -0.25015197 0.19166485 -0.94904613 329.61451129 |
| 46797 | | 0.70993523 0.70281569 -0.04518920 309.45965141 |
| 46798 | | 0.65834334 -0.68506545 -0.31188036 214.46027109 |
| 46799 | | Axis -0.35429978 -0.89001229 0.28696654 |
| 46800 | | Axis point -6.56266263 0.00000000 232.51267062 |
| 46801 | | Rotation angle (degrees) 115.44270597 |
| 46802 | | Shift along axis -330.66231699 |
| 46803 | | |
| 46804 | | |
| 46805 | | > fitmap #26.3 inMap #34 |
| 46806 | | |
| 46807 | | Fit molecule 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#26.3) to map |
| 46808 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1128 atoms |
| 46809 | | average map value = 0.01093, steps = 40 |
| 46810 | | shifted from previous position = 0.0136 |
| 46811 | | rotated from previous position = 0.056 degrees |
| 46812 | | atoms outside contour = 396, contour level = 0.0073311 |
| 46813 | | |
| 46814 | | Position of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#26.3) relative to |
| 46815 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 46816 | | Matrix rotation and translation |
| 46817 | | -0.25044191 0.19256066 -0.94878830 329.65987834 |
| 46818 | | 0.71001093 0.70276508 -0.04478510 309.44631735 |
| 46819 | | 0.65815144 -0.68486613 -0.31272200 214.49855120 |
| 46820 | | Axis -0.35452366 -0.89004067 0.28660178 |
| 46821 | | Axis point -6.47767297 0.00000000 232.37808000 |
| 46822 | | Rotation angle (degrees) 115.48021628 |
| 46823 | | Shift along axis -330.81636809 |
| 46824 | | |
| 46825 | | |
| 46826 | | > fitmap #26.3 inMap #34 |
| 46827 | | |
| 46828 | | Fit molecule 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#26.3) to map |
| 46829 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1128 atoms |
| 46830 | | average map value = 0.01093, steps = 48 |
| 46831 | | shifted from previous position = 0.0249 |
| 46832 | | rotated from previous position = 0.0425 degrees |
| 46833 | | atoms outside contour = 393, contour level = 0.0073311 |
| 46834 | | |
| 46835 | | Position of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#26.3) relative to |
| 46836 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 46837 | | Matrix rotation and translation |
| 46838 | | -0.25077607 0.19313625 -0.94858302 329.70656717 |
| 46839 | | 0.71021693 0.70256140 -0.04471441 309.44271618 |
| 46840 | | 0.65780184 -0.68491303 -0.31335423 214.51452240 |
| 46841 | | Axis -0.35469842 -0.89000844 0.28648562 |
| 46842 | | Axis point -6.41176068 0.00000000 232.30159949 |
| 46843 | | Rotation angle (degrees) 115.51735370 |
| 46844 | | Shift along axis -330.89769971 |
| 46845 | | |
| 46846 | | |
| 46847 | | > hide #!27 models |
| 46848 | | |
| 46849 | | > show #!27 models |
| 46850 | | |
| 46851 | | > hide #!29 models |
| 46852 | | |
| 46853 | | > show #!29 models |
| 46854 | | |
| 46855 | | > hide #!29 models |
| 46856 | | |
| 46857 | | > show #!29 models |
| 46858 | | |
| 46859 | | > hide #!29 models |
| 46860 | | |
| 46861 | | > show #!29 models |
| 46862 | | |
| 46863 | | > hide #!29 models |
| 46864 | | |
| 46865 | | > show #!29 models |
| 46866 | | |
| 46867 | | > show #28 models |
| 46868 | | |
| 46869 | | > hide #28 models |
| 46870 | | |
| 46871 | | > hide #39 models |
| 46872 | | |
| 46873 | | > show #28 models |
| 46874 | | |
| 46875 | | > fitmap #28 inMap #34 |
| 46876 | | |
| 46877 | | Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#28) to map |
| 46878 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1128 atoms |
| 46879 | | average map value = 0.007773, steps = 64 |
| 46880 | | shifted from previous position = 0.00753 |
| 46881 | | rotated from previous position = 0.0352 degrees |
| 46882 | | atoms outside contour = 593, contour level = 0.0073311 |
| 46883 | | |
| 46884 | | Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#28) relative |
| 46885 | | to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 46886 | | Matrix rotation and translation |
| 46887 | | -0.56977216 -0.71673503 0.40205793 245.64427258 |
| 46888 | | -0.48588719 -0.10076147 -0.86819396 216.24614809 |
| 46889 | | 0.66277698 -0.69002755 -0.29084129 214.86790721 |
| 46890 | | Axis 0.45547881 -0.66652294 0.59015780 |
| 46891 | | Axis point 184.92723986 0.00000000 218.17465974 |
| 46892 | | Rotation angle (degrees) 168.72130754 |
| 46893 | | Shift along axis 94.55871550 |
| 46894 | | |
| 46895 | | |
| 46896 | | > fitmap #28 inMap #34 |
| 46897 | | |
| 46898 | | Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#28) to map |
| 46899 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1128 atoms |
| 46900 | | average map value = 0.007773, steps = 44 |
| 46901 | | shifted from previous position = 0.00467 |
| 46902 | | rotated from previous position = 0.0259 degrees |
| 46903 | | atoms outside contour = 592, contour level = 0.0073311 |
| 46904 | | |
| 46905 | | Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#28) relative |
| 46906 | | to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 46907 | | Matrix rotation and translation |
| 46908 | | -0.56974234 -0.71665127 0.40224944 245.64234236 |
| 46909 | | -0.48572977 -0.10117318 -0.86823416 216.22185965 |
| 46910 | | 0.66291798 -0.69005429 -0.29045622 214.85271487 |
| 46911 | | Axis 0.45549464 -0.66636665 0.59032204 |
| 46912 | | Axis point 184.94036291 0.00000000 218.20662049 |
| 46913 | | Rotation angle (degrees) 168.72084168 |
| 46914 | | Shift along axis 94.63802762 |
| 46915 | | |
| 46916 | | |
| 46917 | | > fitmap #28 inMap #34 |
| 46918 | | |
| 46919 | | Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#28) to map |
| 46920 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1128 atoms |
| 46921 | | average map value = 0.007773, steps = 76 |
| 46922 | | shifted from previous position = 0.00297 |
| 46923 | | rotated from previous position = 0.0032 degrees |
| 46924 | | atoms outside contour = 592, contour level = 0.0073311 |
| 46925 | | |
| 46926 | | Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#28) relative |
| 46927 | | to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 46928 | | Matrix rotation and translation |
| 46929 | | -0.56977869 -0.71664593 0.40220745 245.64658784 |
| 46930 | | -0.48569764 -0.10113646 -0.86825642 216.22256444 |
| 46931 | | 0.66291027 -0.69006522 -0.29044784 214.85034197 |
| 46932 | | Axis 0.45547257 -0.66637964 0.59032441 |
| 46933 | | Axis point 184.93644775 0.00000000 218.20641252 |
| 46934 | | Rotation angle (degrees) 168.71956173 |
| 46935 | | Shift along axis 94.63037015 |
| 46936 | | |
| 46937 | | |
| 46938 | | > fitmap #28 inMap #34 |
| 46939 | | |
| 46940 | | Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#28) to map |
| 46941 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1128 atoms |
| 46942 | | average map value = 0.007773, steps = 80 |
| 46943 | | shifted from previous position = 0.003 |
| 46944 | | rotated from previous position = 0.0126 degrees |
| 46945 | | atoms outside contour = 592, contour level = 0.0073311 |
| 46946 | | |
| 46947 | | Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#28) relative |
| 46948 | | to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 46949 | | Matrix rotation and translation |
| 46950 | | -0.56975507 -0.71676535 0.40202808 245.64499671 |
| 46951 | | -0.48563061 -0.10100146 -0.86830962 216.23091799 |
| 46952 | | 0.66297968 -0.68996096 -0.29053710 214.85692881 |
| 46953 | | Axis 0.45547043 -0.66642348 0.59027657 |
| 46954 | | Axis point 184.92158374 0.00000000 218.21261815 |
| 46955 | | Rotation angle (degrees) 168.70940821 |
| 46956 | | Shift along axis 94.60768454 |
| 46957 | | |
| 46958 | | |
| 46959 | | > fitmap #28 inMap #34 |
| 46960 | | |
| 46961 | | Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#28) to map |
| 46962 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1128 atoms |
| 46963 | | average map value = 0.007772, steps = 28 |
| 46964 | | shifted from previous position = 0.0343 |
| 46965 | | rotated from previous position = 0.0983 degrees |
| 46966 | | atoms outside contour = 594, contour level = 0.0073311 |
| 46967 | | |
| 46968 | | Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#28) relative |
| 46969 | | to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 46970 | | Matrix rotation and translation |
| 46971 | | -0.56976373 -0.71640192 0.40266310 245.66998860 |
| 46972 | | -0.48493373 -0.10249149 -0.86852447 216.13776532 |
| 46973 | | 0.66348214 -0.69011867 -0.28901152 214.79452675 |
| 46974 | | Axis 0.45545972 -0.66585597 0.59092492 |
| 46975 | | Axis point 184.97144152 0.00000000 218.33697098 |
| 46976 | | Rotation angle (degrees) 168.70547428 |
| 46977 | | Shift along axis 94.90360191 |
| 46978 | | |
| 46979 | | |
| 46980 | | > hide #32.1 models |
| 46981 | | |
| 46982 | | > show #32.1 models |
| 46983 | | |
| 46984 | | > hide #32.2 models |
| 46985 | | |
| 46986 | | > show #32.2 models |
| 46987 | | |
| 46988 | | > hide #32.1 models |
| 46989 | | |
| 46990 | | > show #32.1 models |
| 46991 | | |
| 46992 | | > hide #32.2 models |
| 46993 | | |
| 46994 | | > show #32.2 models |
| 46995 | | |
| 46996 | | > hide #!35 models |
| 46997 | | |
| 46998 | | > show #!35 models |
| 46999 | | |
| 47000 | | > hide #!36 models |
| 47001 | | |
| 47002 | | > show #!36 models |
| 47003 | | |
| 47004 | | > hide #!37 models |
| 47005 | | |
| 47006 | | > show #!37 models |
| 47007 | | |
| 47008 | | > show #38 models |
| 47009 | | |
| 47010 | | > hide #38 models |
| 47011 | | |
| 47012 | | > hide #!3 models |
| 47013 | | |
| 47014 | | > show #!3 models |
| 47015 | | |
| 47016 | | > hide #!4 models |
| 47017 | | |
| 47018 | | > show #!4 models |
| 47019 | | |
| 47020 | | > hide #!4 models |
| 47021 | | |
| 47022 | | > show #!4 models |
| 47023 | | |
| 47024 | | > hide #!9 models |
| 47025 | | |
| 47026 | | > show #!9 models |
| 47027 | | |
| 47028 | | > show #8 models |
| 47029 | | |
| 47030 | | > close #1 |
| 47031 | | |
| 47032 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/Structure |
| 47033 | | > files/alphafold/AF-Q5XJY5-CopD.pdb" |
| 47034 | | |
| 47035 | | AF-Q5XJY5-CopD.pdb title: |
| 47036 | | Alphafold monomer V2.0 prediction for coatomer subunit δ (Q5XJY5) [more |
| 47037 | | info...] |
| 47038 | | |
| 47039 | | Chain information for AF-Q5XJY5-CopD.pdb #1 |
| 47040 | | --- |
| 47041 | | Chain | Description | UniProt |
| 47042 | | A | coatomer subunit δ | COPD_MOUSE 1-511 |
| 47043 | | |
| 47044 | | |
| 47045 | | > color #1 #b55c00ff |
| 47046 | | |
| 47047 | | > select add #1 |
| 47048 | | |
| 47049 | | 4014 atoms, 4084 bonds, 511 residues, 2 models selected |
| 47050 | | |
| 47051 | | > view orient |
| 47052 | | |
| 47053 | | > ui mousemode right "translate selected models" |
| 47054 | | |
| 47055 | | > view matrix models |
| 47056 | | > #24,0.22845,0.95367,-0.19576,582.24,0.012859,-0.20401,-0.97888,618.31,-0.97347,0.22111,-0.058869,274.42,#1,1,0,0,322.45,0,1,0,284.52,0,0,1,0 |
| 47057 | | |
| 47058 | | > view matrix models |
| 47059 | | > #24,0.22845,0.95367,-0.19576,714.03,0.012859,-0.20401,-0.97888,717.94,-0.97347,0.22111,-0.058869,470.12,#1,1,0,0,454.24,0,1,0,384.15,0,0,1,195.7 |
| 47060 | | |
| 47061 | | > view matrix models |
| 47062 | | > #24,0.22845,0.95367,-0.19576,714.38,0.012859,-0.20401,-0.97888,741.01,-0.97347,0.22111,-0.058869,482.72,#1,1,0,0,454.59,0,1,0,407.22,0,0,1,208.3 |
| 47063 | | |
| 47064 | | > ui tool show Matchmaker |
| 47065 | | |
| 47066 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 47067 | | QTBUG which explains how to reproduce. |
| 47068 | | |
| 47069 | | > matchmaker #1 to #8 |
| 47070 | | |
| 47071 | | Parameters |
| 47072 | | --- |
| 47073 | | Chain pairing | bb |
| 47074 | | Alignment algorithm | Needleman-Wunsch |
| 47075 | | Similarity matrix | BLOSUM-62 |
| 47076 | | SS fraction | 0.3 |
| 47077 | | Gap open (HH/SS/other) | 18/18/6 |
| 47078 | | Gap extend | 1 |
| 47079 | | SS matrix | | | H | S | O |
| 47080 | | ---|---|---|--- |
| 47081 | | H | 6 | -9 | -6 |
| 47082 | | S | | 6 | -6 |
| 47083 | | O | | | 4 |
| 47084 | | Iteration cutoff | 2 |
| 47085 | | |
| 47086 | | Matchmaker CopD_Q5XJY5, chain A (#8) with AF-Q5XJY5-CopD.pdb, chain A (#1), |
| 47087 | | sequence alignment score = 2127.5 |
| 47088 | | RMSD between 179 pruned atom pairs is 0.000 angstroms; (across all 179 pairs: |
| 47089 | | 0.000) |
| 47090 | | |
| 47091 | | |
| 47092 | | > ui mousemode right select |
| 47093 | | |
| 47094 | | > select subtract #1 |
| 47095 | | |
| 47096 | | 1 bond, 1 model selected |
| 47097 | | |
| 47098 | | > hide #1 models |
| 47099 | | |
| 47100 | | > show #1 models |
| 47101 | | |
| 47102 | | > hide #1 models |
| 47103 | | |
| 47104 | | > show #1 models |
| 47105 | | |
| 47106 | | > hide #8 models |
| 47107 | | |
| 47108 | | > show #8 models |
| 47109 | | |
| 47110 | | > hide #8 models |
| 47111 | | |
| 47112 | | > show #8 models |
| 47113 | | |
| 47114 | | > hide #8 models |
| 47115 | | |
| 47116 | | > show #8 models |
| 47117 | | |
| 47118 | | > hide #8 models |
| 47119 | | |
| 47120 | | > hide #!3 models |
| 47121 | | |
| 47122 | | > hide #!4 models |
| 47123 | | |
| 47124 | | > hide #!9 models |
| 47125 | | |
| 47126 | | > hide #!34 models |
| 47127 | | |
| 47128 | | > show #!34 models |
| 47129 | | |
| 47130 | | > show #!3 models |
| 47131 | | |
| 47132 | | > show #!4 models |
| 47133 | | |
| 47134 | | > show #!9 models |
| 47135 | | |
| 47136 | | > hide #1 models |
| 47137 | | |
| 47138 | | > show #8 models |
| 47139 | | |
| 47140 | | > show #25.1 models |
| 47141 | | |
| 47142 | | > hide #25.1 models |
| 47143 | | |
| 47144 | | > show #25.1 models |
| 47145 | | |
| 47146 | | > hide #25.1 models |
| 47147 | | |
| 47148 | | > show #!30 models |
| 47149 | | |
| 47150 | | > hide #!3 models |
| 47151 | | |
| 47152 | | > select add #24 |
| 47153 | | |
| 47154 | | 1934 atoms, 1950 bonds, 254 residues, 1 model selected |
| 47155 | | |
| 47156 | | > select subtract #24 |
| 47157 | | |
| 47158 | | 1 model selected |
| 47159 | | |
| 47160 | | > hide #!24 models |
| 47161 | | |
| 47162 | | > show #!24 models |
| 47163 | | |
| 47164 | | > hide #!24 models |
| 47165 | | |
| 47166 | | > show #!24 models |
| 47167 | | |
| 47168 | | > hide #!24 models |
| 47169 | | |
| 47170 | | > show #!24 models |
| 47171 | | |
| 47172 | | > hide #!24 models |
| 47173 | | |
| 47174 | | > show #!24 models |
| 47175 | | |
| 47176 | | > select add #24 |
| 47177 | | |
| 47178 | | 1934 atoms, 1950 bonds, 254 residues, 1 model selected |
| 47179 | | |
| 47180 | | > view orient |
| 47181 | | |
| 47182 | | Drag select of 7 atoms, 38 residues, 4 bonds |
| 47183 | | Drag select of 95 atoms, 239 residues, 82 bonds |
| 47184 | | |
| 47185 | | > ui mousemode right "translate selected models" |
| 47186 | | |
| 47187 | | > view matrix models |
| 47188 | | > #24,0.22845,0.95367,-0.19576,311.99,0.012859,-0.20401,-0.97888,299.49,-0.97347,0.22111,-0.058869,482.72 |
| 47189 | | |
| 47190 | | > ui tool show Matchmaker |
| 47191 | | |
| 47192 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 47193 | | QTBUG which explains how to reproduce. |
| 47194 | | |
| 47195 | | > matchmaker #!24 to #11 |
| 47196 | | |
| 47197 | | Parameters |
| 47198 | | --- |
| 47199 | | Chain pairing | bb |
| 47200 | | Alignment algorithm | Needleman-Wunsch |
| 47201 | | Similarity matrix | BLOSUM-62 |
| 47202 | | SS fraction | 0.3 |
| 47203 | | Gap open (HH/SS/other) | 18/18/6 |
| 47204 | | Gap extend | 1 |
| 47205 | | SS matrix | | | H | S | O |
| 47206 | | ---|---|---|--- |
| 47207 | | H | 6 | -9 | -6 |
| 47208 | | S | | 6 | -6 |
| 47209 | | O | | | 4 |
| 47210 | | Iteration cutoff | 2 |
| 47211 | | |
| 47212 | | Matchmaker Golph3_ Q9CRA5.pdb, chain A (#11) with 3kn1_Golph3_xtal.cif, chain |
| 47213 | | A (#24), sequence alignment score = 1235.4 |
| 47214 | | RMSD between 224 pruned atom pairs is 0.677 angstroms; (across all 239 pairs: |
| 47215 | | 1.230) |
| 47216 | | |
| 47217 | | |
| 47218 | | > select add #24 |
| 47219 | | |
| 47220 | | 1934 atoms, 1950 bonds, 254 residues, 2 models selected |
| 47221 | | |
| 47222 | | > select subtract #24 |
| 47223 | | |
| 47224 | | 1 model selected |
| 47225 | | |
| 47226 | | > fitmap #24 inMap #34 |
| 47227 | | |
| 47228 | | Fit molecule 3kn1_Golph3_xtal.cif (#24) to map |
| 47229 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1934 atoms |
| 47230 | | average map value = 0.008452, steps = 44 |
| 47231 | | shifted from previous position = 0.00199 |
| 47232 | | rotated from previous position = 0.00237 degrees |
| 47233 | | atoms outside contour = 870, contour level = 0.0073311 |
| 47234 | | |
| 47235 | | Position of 3kn1_Golph3_xtal.cif (#24) relative to |
| 47236 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 47237 | | Matrix rotation and translation |
| 47238 | | 0.23411882 0.94979669 -0.20754429 197.36124212 |
| 47239 | | 0.00020207 -0.21352478 -0.97693763 258.11108339 |
| 47240 | | -0.97220797 0.22867754 -0.05018209 197.38531977 |
| 47241 | | Axis 0.70313521 0.44596483 -0.55381969 |
| 47242 | | Axis point 0.00000000 -45.19312295 254.34939772 |
| 47243 | | Rotation angle (degrees) 120.98368854 |
| 47244 | | Shift along axis 144.56422808 |
| 47245 | | |
| 47246 | | |
| 47247 | | > fitmap #24 inMap #34 |
| 47248 | | |
| 47249 | | Fit molecule 3kn1_Golph3_xtal.cif (#24) to map |
| 47250 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1934 atoms |
| 47251 | | average map value = 0.008452, steps = 44 |
| 47252 | | shifted from previous position = 0.00409 |
| 47253 | | rotated from previous position = 0.0477 degrees |
| 47254 | | atoms outside contour = 871, contour level = 0.0073311 |
| 47255 | | |
| 47256 | | Position of 3kn1_Golph3_xtal.cif (#24) relative to |
| 47257 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 47258 | | Matrix rotation and translation |
| 47259 | | 0.23367514 0.95001198 -0.20705835 197.35573015 |
| 47260 | | -0.00012509 -0.21292467 -0.97706861 258.07355956 |
| 47261 | | -0.97231472 0.22834255 -0.04963637 197.41034193 |
| 47262 | | Axis 0.70284348 0.44620082 -0.55399988 |
| 47263 | | Axis point 0.00000000 -45.37463902 254.47002005 |
| 47264 | | Rotation angle (degrees) 120.96022808 |
| 47265 | | Shift along axis 144.49751519 |
| 47266 | | |
| 47267 | | |
| 47268 | | > hide #!24 models |
| 47269 | | |
| 47270 | | > show #11 models |
| 47271 | | |
| 47272 | | > fitmap #24 inMap #34 |
| 47273 | | |
| 47274 | | Fit molecule 3kn1_Golph3_xtal.cif (#24) to map |
| 47275 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1934 atoms |
| 47276 | | average map value = 0.008452, steps = 44 |
| 47277 | | shifted from previous position = 0.0328 |
| 47278 | | rotated from previous position = 0.0458 degrees |
| 47279 | | atoms outside contour = 868, contour level = 0.0073311 |
| 47280 | | |
| 47281 | | Position of 3kn1_Golph3_xtal.cif (#24) relative to |
| 47282 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 47283 | | Matrix rotation and translation |
| 47284 | | 0.23415440 0.94986066 -0.20721111 197.39669232 |
| 47285 | | 0.00041715 -0.21323457 -0.97700094 258.09433832 |
| 47286 | | -0.97219933 0.22868264 -0.05032604 197.39158985 |
| 47287 | | Axis 0.70313034 0.44612570 -0.55369630 |
| 47288 | | Axis point 0.00000000 -45.26326865 254.32962611 |
| 47289 | | Rotation angle (degrees) 120.97761199 |
| 47290 | | Shift along axis 144.64312646 |
| 47291 | | |
| 47292 | | |
| 47293 | | > fitmap #24 inMap #34 |
| 47294 | | |
| 47295 | | Fit molecule 3kn1_Golph3_xtal.cif (#24) to map |
| 47296 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1934 atoms |
| 47297 | | average map value = 0.008452, steps = 36 |
| 47298 | | shifted from previous position = 0.0198 |
| 47299 | | rotated from previous position = 0.0176 degrees |
| 47300 | | atoms outside contour = 868, contour level = 0.0073311 |
| 47301 | | |
| 47302 | | Position of 3kn1_Golph3_xtal.cif (#24) relative to |
| 47303 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 47304 | | Matrix rotation and translation |
| 47305 | | 0.23408490 0.94982276 -0.20746319 197.37337718 |
| 47306 | | 0.00020395 -0.21344001 -0.97695615 258.10559803 |
| 47307 | | -0.97221614 0.22864837 -0.05015680 197.38961043 |
| 47308 | | Axis 0.70311025 0.44600500 -0.55381903 |
| 47309 | | Axis point 0.00000000 -45.22107900 254.35958148 |
| 47310 | | Rotation angle (degrees) 120.98114440 |
| 47311 | | Shift along axis 144.57350888 |
| 47312 | | |
| 47313 | | |
| 47314 | | > fitmap #24 inMap #34 |
| 47315 | | |
| 47316 | | Fit molecule 3kn1_Golph3_xtal.cif (#24) to map |
| 47317 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1934 atoms |
| 47318 | | average map value = 0.008452, steps = 40 |
| 47319 | | shifted from previous position = 0.0111 |
| 47320 | | rotated from previous position = 0.0115 degrees |
| 47321 | | atoms outside contour = 870, contour level = 0.0073311 |
| 47322 | | |
| 47323 | | Position of 3kn1_Golph3_xtal.cif (#24) relative to |
| 47324 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 47325 | | Matrix rotation and translation |
| 47326 | | 0.23420658 0.94976056 -0.20761057 197.36474823 |
| 47327 | | 0.00016749 -0.21358949 -0.97692349 258.11341680 |
| 47328 | | -0.97218684 0.22876713 -0.05018314 197.37895020 |
| 47329 | | Axis 0.70317380 0.44591041 -0.55381451 |
| 47330 | | Axis point 0.00000000 -45.17503829 254.34330682 |
| 47331 | | Rotation angle (degrees) 120.98295329 |
| 47332 | | Shift along axis 144.56585129 |
| 47333 | | |
| 47334 | | |
| 47335 | | > hide #11 models |
| 47336 | | |
| 47337 | | > show #!24 models |
| 47338 | | |
| 47339 | | > fitmap #24 inMap #34 |
| 47340 | | |
| 47341 | | Fit molecule 3kn1_Golph3_xtal.cif (#24) to map |
| 47342 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1934 atoms |
| 47343 | | average map value = 0.008452, steps = 44 |
| 47344 | | shifted from previous position = 0.00201 |
| 47345 | | rotated from previous position = 0.0533 degrees |
| 47346 | | atoms outside contour = 871, contour level = 0.0073311 |
| 47347 | | |
| 47348 | | Position of 3kn1_Golph3_xtal.cif (#24) relative to |
| 47349 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 47350 | | Matrix rotation and translation |
| 47351 | | 0.23369916 0.95001506 -0.20701710 197.35800882 |
| 47352 | | -0.00011063 -0.21288690 -0.97707684 258.07126543 |
| 47353 | | -0.97230895 0.22836494 -0.04964639 197.41036117 |
| 47354 | | Axis 0.70284861 0.44621343 -0.55398322 |
| 47355 | | Axis point 0.00000000 -45.38179119 254.46707755 |
| 47356 | | Rotation angle (degrees) 120.95849874 |
| 47357 | | Shift along axis 144.50563895 |
| 47358 | | |
| 47359 | | |
| 47360 | | > fitmap #24 inMap #34 |
| 47361 | | |
| 47362 | | Fit molecule 3kn1_Golph3_xtal.cif (#24) to map |
| 47363 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1934 atoms |
| 47364 | | average map value = 0.008452, steps = 40 |
| 47365 | | shifted from previous position = 0.00765 |
| 47366 | | rotated from previous position = 0.0189 degrees |
| 47367 | | atoms outside contour = 870, contour level = 0.0073311 |
| 47368 | | |
| 47369 | | Position of 3kn1_Golph3_xtal.cif (#24) relative to |
| 47370 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 47371 | | Matrix rotation and translation |
| 47372 | | 0.23388251 0.94996011 -0.20706223 197.36980604 |
| 47373 | | 0.00013398 -0.21300044 -0.97705209 258.08065054 |
| 47374 | | -0.97226486 0.22848765 -0.04994435 197.39999665 |
| 47375 | | Axis 0.70296183 0.44619702 -0.55385276 |
| 47376 | | Axis point 0.00000000 -45.33519202 254.40462393 |
| 47377 | | Rotation angle (degrees) 120.96612115 |
| 47378 | | Shift along axis 144.56772497 |
| 47379 | | |
| 47380 | | |
| 47381 | | > show #!3 models |
| 47382 | | |
| 47383 | | > hide #!3 models |
| 47384 | | |
| 47385 | | > hide #!30 models |
| 47386 | | |
| 47387 | | > show #!30 models |
| 47388 | | |
| 47389 | | > fitmap #30 inMap #34 |
| 47390 | | |
| 47391 | | Fit molecule 4j87_yeast_alphaCOPI.cif (#30) to map |
| 47392 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2737 atoms |
| 47393 | | average map value = 0.009304, steps = 28 |
| 47394 | | shifted from previous position = 0.0444 |
| 47395 | | rotated from previous position = 0.043 degrees |
| 47396 | | atoms outside contour = 1169, contour level = 0.0073311 |
| 47397 | | |
| 47398 | | Position of 4j87_yeast_alphaCOPI.cif (#30) relative to |
| 47399 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 47400 | | Matrix rotation and translation |
| 47401 | | 0.79065852 -0.52006743 0.32309283 236.67837552 |
| 47402 | | -0.42071527 -0.07811133 0.90382370 306.89589708 |
| 47403 | | -0.44481206 -0.85054600 -0.28055970 224.01788859 |
| 47404 | | Axis -0.91485641 0.40044166 0.05180947 |
| 47405 | | Axis point 0.00000000 298.40681607 -19.94524805 |
| 47406 | | Rotation angle (degrees) 106.49945673 |
| 47407 | | Shift along axis -82.02658130 |
| 47408 | | |
| 47409 | | |
| 47410 | | > fitmap #30 inMap #34 |
| 47411 | | |
| 47412 | | Fit molecule 4j87_yeast_alphaCOPI.cif (#30) to map |
| 47413 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2737 atoms |
| 47414 | | average map value = 0.009304, steps = 44 |
| 47415 | | shifted from previous position = 0.00604 |
| 47416 | | rotated from previous position = 0.0155 degrees |
| 47417 | | atoms outside contour = 1170, contour level = 0.0073311 |
| 47418 | | |
| 47419 | | Position of 4j87_yeast_alphaCOPI.cif (#30) relative to |
| 47420 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 47421 | | Matrix rotation and translation |
| 47422 | | 0.79062785 -0.52015485 0.32302715 236.68246447 |
| 47423 | | -0.42057503 -0.07792376 0.90390516 306.90046176 |
| 47424 | | -0.44499917 -0.85050974 -0.28037283 224.02093681 |
| 47425 | | Axis -0.91483143 0.40048372 0.05192543 |
| 47426 | | Axis point 0.00000000 298.44102839 -19.95437080 |
| 47427 | | Rotation angle (degrees) 106.48918577 |
| 47428 | | Shift along axis -81.98353244 |
| 47429 | | |
| 47430 | | |
| 47431 | | > fitmap #30 inMap #34 |
| 47432 | | |
| 47433 | | Fit molecule 4j87_yeast_alphaCOPI.cif (#30) to map |
| 47434 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2737 atoms |
| 47435 | | average map value = 0.009304, steps = 40 |
| 47436 | | shifted from previous position = 0.0346 |
| 47437 | | rotated from previous position = 0.0549 degrees |
| 47438 | | atoms outside contour = 1171, contour level = 0.0073311 |
| 47439 | | |
| 47440 | | Position of 4j87_yeast_alphaCOPI.cif (#30) relative to |
| 47441 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 47442 | | Matrix rotation and translation |
| 47443 | | 0.79089557 -0.51967170 0.32314940 236.68458374 |
| 47444 | | -0.42088694 -0.07860174 0.90370126 306.91730947 |
| 47445 | | -0.44422786 -0.85074267 -0.28088879 224.04967298 |
| 47446 | | Axis -0.91497749 0.40020254 0.05151822 |
| 47447 | | Axis point 0.00000000 298.34590809 -19.93277897 |
| 47448 | | Rotation angle (degrees) 106.51686013 |
| 47449 | | Shift along axis -82.18933752 |
| 47450 | | |
| 47451 | | |
| 47452 | | > fitmap #30 inMap #34 |
| 47453 | | |
| 47454 | | Fit molecule 4j87_yeast_alphaCOPI.cif (#30) to map |
| 47455 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2737 atoms |
| 47456 | | average map value = 0.009304, steps = 28 |
| 47457 | | shifted from previous position = 0.0248 |
| 47458 | | rotated from previous position = 0.0349 degrees |
| 47459 | | atoms outside contour = 1171, contour level = 0.0073311 |
| 47460 | | |
| 47461 | | Position of 4j87_yeast_alphaCOPI.cif (#30) relative to |
| 47462 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 47463 | | Matrix rotation and translation |
| 47464 | | 0.79075543 -0.51989715 0.32312971 236.68339373 |
| 47465 | | -0.42069040 -0.07810589 0.90383575 306.90424046 |
| 47466 | | -0.44466330 -0.85065059 -0.28047840 224.03220543 |
| 47467 | | Axis -0.91489129 0.40037196 0.05173217 |
| 47468 | | Axis point 0.00000000 298.41110765 -19.96559274 |
| 47469 | | Rotation angle (degrees) 106.49396960 |
| 47470 | | Shift along axis -82.07405001 |
| 47471 | | |
| 47472 | | |
| 47473 | | > fitmap #30 inMap #34 |
| 47474 | | |
| 47475 | | Fit molecule 4j87_yeast_alphaCOPI.cif (#30) to map |
| 47476 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2737 atoms |
| 47477 | | average map value = 0.009304, steps = 36 |
| 47478 | | shifted from previous position = 0.0193 |
| 47479 | | rotated from previous position = 0.00966 degrees |
| 47480 | | atoms outside contour = 1169, contour level = 0.0073311 |
| 47481 | | |
| 47482 | | Position of 4j87_yeast_alphaCOPI.cif (#30) relative to |
| 47483 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 47484 | | Matrix rotation and translation |
| 47485 | | 0.79077253 -0.51990541 0.32307457 236.68582329 |
| 47486 | | -0.42071618 -0.07826985 0.90380957 306.91632187 |
| 47487 | | -0.44460848 -0.85063048 -0.28062626 224.04469682 |
| 47488 | | Axis -0.91490879 0.40033284 0.05172539 |
| 47489 | | Axis point 0.00000000 298.40008943 -19.94137991 |
| 47490 | | Rotation angle (degrees) 106.50277513 |
| 47491 | | Shift along axis -82.08845700 |
| 47492 | | |
| 47493 | | |
| 47494 | | > fitmap #30 inMap #34 |
| 47495 | | |
| 47496 | | Fit molecule 4j87_yeast_alphaCOPI.cif (#30) to map |
| 47497 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2737 atoms |
| 47498 | | average map value = 0.009304, steps = 44 |
| 47499 | | shifted from previous position = 0.00798 |
| 47500 | | rotated from previous position = 0.0359 degrees |
| 47501 | | atoms outside contour = 1173, contour level = 0.0073311 |
| 47502 | | |
| 47503 | | Position of 4j87_yeast_alphaCOPI.cif (#30) relative to |
| 47504 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 47505 | | Matrix rotation and translation |
| 47506 | | 0.79095030 -0.51957998 0.32316292 236.68460133 |
| 47507 | | -0.42092107 -0.07870379 0.90367648 306.91900688 |
| 47508 | | -0.44409806 -0.85078926 -0.28095295 224.05143643 |
| 47509 | | Axis -0.91500463 0.40014880 0.05145348 |
| 47510 | | Axis point 0.00000000 298.32918230 -19.93282662 |
| 47511 | | Rotation angle (degrees) 106.52019122 |
| 47512 | | Shift along axis -82.22601095 |
| 47513 | | |
| 47514 | | |
| 47515 | | > fitmap #30 inMap #34 |
| 47516 | | |
| 47517 | | Fit molecule 4j87_yeast_alphaCOPI.cif (#30) to map |
| 47518 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2737 atoms |
| 47519 | | average map value = 0.009304, steps = 28 |
| 47520 | | shifted from previous position = 0.0246 |
| 47521 | | rotated from previous position = 0.0351 degrees |
| 47522 | | atoms outside contour = 1170, contour level = 0.0073311 |
| 47523 | | |
| 47524 | | Position of 4j87_yeast_alphaCOPI.cif (#30) relative to |
| 47525 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 47526 | | Matrix rotation and translation |
| 47527 | | 0.79079859 -0.51980952 0.32316506 236.68350793 |
| 47528 | | -0.42074402 -0.07819437 0.90380314 306.90476290 |
| 47529 | | -0.44453579 -0.85069602 -0.28054274 224.03459739 |
| 47530 | | Axis -0.91491347 0.40033068 0.05165939 |
| 47531 | | Axis point 0.00000000 298.39624004 -19.96672359 |
| 47532 | | Rotation angle (degrees) 106.49724595 |
| 47533 | | Shift along axis -82.10804416 |
| 47534 | | |
| 47535 | | |
| 47536 | | > fitmap #30 inMap #34 |
| 47537 | | |
| 47538 | | Fit molecule 4j87_yeast_alphaCOPI.cif (#30) to map |
| 47539 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2737 atoms |
| 47540 | | average map value = 0.009304, steps = 28 |
| 47541 | | shifted from previous position = 0.013 |
| 47542 | | rotated from previous position = 0.0168 degrees |
| 47543 | | atoms outside contour = 1169, contour level = 0.0073311 |
| 47544 | | |
| 47545 | | Position of 4j87_yeast_alphaCOPI.cif (#30) relative to |
| 47546 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 47547 | | Matrix rotation and translation |
| 47548 | | 0.79073436 -0.51999363 0.32302601 236.68295257 |
| 47549 | | -0.42075309 -0.07838298 0.90378258 306.91348854 |
| 47550 | | -0.44464144 -0.85056613 -0.28076905 224.03795392 |
| 47551 | | Axis -0.91490274 0.40034291 0.05175450 |
| 47552 | | Axis point 0.00000000 298.38336978 -19.91695214 |
| 47553 | | Rotation angle (degrees) 106.51156264 |
| 47554 | | Shift along axis -82.07627243 |
| 47555 | | |
| 47556 | | |
| 47557 | | > ui tool show Matchmaker |
| 47558 | | |
| 47559 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 47560 | | QTBUG which explains how to reproduce. |
| 47561 | | |
| 47562 | | > matchmaker #!30 to #3 |
| 47563 | | |
| 47564 | | Parameters |
| 47565 | | --- |
| 47566 | | Chain pairing | bb |
| 47567 | | Alignment algorithm | Needleman-Wunsch |
| 47568 | | Similarity matrix | BLOSUM-62 |
| 47569 | | SS fraction | 0.3 |
| 47570 | | Gap open (HH/SS/other) | 18/18/6 |
| 47571 | | Gap extend | 1 |
| 47572 | | SS matrix | | | H | S | O |
| 47573 | | ---|---|---|--- |
| 47574 | | H | 6 | -9 | -6 |
| 47575 | | S | | 6 | -6 |
| 47576 | | O | | | 4 |
| 47577 | | Iteration cutoff | 2 |
| 47578 | | |
| 47579 | | Matchmaker CopA_F8WHL2.pdb, chain A (#3) with 4j87_yeast_alphaCOPI.cif, chain |
| 47580 | | A (#30), sequence alignment score = 1380.7 |
| 47581 | | RMSD between 297 pruned atom pairs is 0.540 angstroms; (across all 309 pairs: |
| 47582 | | 2.943) |
| 47583 | | |
| 47584 | | |
| 47585 | | > fitmap #30 inMap #34 |
| 47586 | | |
| 47587 | | Fit molecule 4j87_yeast_alphaCOPI.cif (#30) to map |
| 47588 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2737 atoms |
| 47589 | | average map value = 0.009304, steps = 48 |
| 47590 | | shifted from previous position = 0.484 |
| 47591 | | rotated from previous position = 2.47 degrees |
| 47592 | | atoms outside contour = 1170, contour level = 0.0073311 |
| 47593 | | |
| 47594 | | Position of 4j87_yeast_alphaCOPI.cif (#30) relative to |
| 47595 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 47596 | | Matrix rotation and translation |
| 47597 | | 0.79086817 -0.51973337 0.32311726 236.68392710 |
| 47598 | | -0.42085373 -0.07856391 0.90372001 306.91790359 |
| 47599 | | -0.44430810 -0.85070849 -0.28086542 224.04826702 |
| 47600 | | Axis -0.91496466 0.40022553 0.05156744 |
| 47601 | | Axis point 0.00000000 298.35339518 -19.92897462 |
| 47602 | | Rotation angle (degrees) 106.51585001 |
| 47603 | | Shift along axis -82.16745292 |
| 47604 | | |
| 47605 | | |
| 47606 | | > fitmap #30 inMap #34 |
| 47607 | | |
| 47608 | | Fit molecule 4j87_yeast_alphaCOPI.cif (#30) to map |
| 47609 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2737 atoms |
| 47610 | | average map value = 0.009304, steps = 48 |
| 47611 | | shifted from previous position = 0.484 |
| 47612 | | rotated from previous position = 2.47 degrees |
| 47613 | | atoms outside contour = 1170, contour level = 0.0073311 |
| 47614 | | |
| 47615 | | Position of 4j87_yeast_alphaCOPI.cif (#30) relative to |
| 47616 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 47617 | | Matrix rotation and translation |
| 47618 | | 0.79086817 -0.51973337 0.32311726 236.68392710 |
| 47619 | | -0.42085373 -0.07856391 0.90372001 306.91790359 |
| 47620 | | -0.44430810 -0.85070849 -0.28086542 224.04826702 |
| 47621 | | Axis -0.91496466 0.40022553 0.05156744 |
| 47622 | | Axis point 0.00000000 298.35339518 -19.92897462 |
| 47623 | | Rotation angle (degrees) 106.51585001 |
| 47624 | | Shift along axis -82.16745292 |
| 47625 | | |
| 47626 | | |
| 47627 | | > fitmap #30 inMap #34 |
| 47628 | | |
| 47629 | | Fit molecule 4j87_yeast_alphaCOPI.cif (#30) to map |
| 47630 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2737 atoms |
| 47631 | | average map value = 0.009304, steps = 48 |
| 47632 | | shifted from previous position = 0.484 |
| 47633 | | rotated from previous position = 2.47 degrees |
| 47634 | | atoms outside contour = 1170, contour level = 0.0073311 |
| 47635 | | |
| 47636 | | Position of 4j87_yeast_alphaCOPI.cif (#30) relative to |
| 47637 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 47638 | | Matrix rotation and translation |
| 47639 | | 0.79086817 -0.51973337 0.32311726 236.68392710 |
| 47640 | | -0.42085373 -0.07856391 0.90372001 306.91790359 |
| 47641 | | -0.44430810 -0.85070849 -0.28086542 224.04826702 |
| 47642 | | Axis -0.91496466 0.40022553 0.05156744 |
| 47643 | | Axis point 0.00000000 298.35339518 -19.92897462 |
| 47644 | | Rotation angle (degrees) 106.51585001 |
| 47645 | | Shift along axis -82.16745292 |
| 47646 | | |
| 47647 | | |
| 47648 | | > fitmap #30 inMap #34 |
| 47649 | | |
| 47650 | | Fit molecule 4j87_yeast_alphaCOPI.cif (#30) to map |
| 47651 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2737 atoms |
| 47652 | | average map value = 0.009304, steps = 48 |
| 47653 | | shifted from previous position = 0.484 |
| 47654 | | rotated from previous position = 2.47 degrees |
| 47655 | | atoms outside contour = 1170, contour level = 0.0073311 |
| 47656 | | |
| 47657 | | Position of 4j87_yeast_alphaCOPI.cif (#30) relative to |
| 47658 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 47659 | | Matrix rotation and translation |
| 47660 | | 0.79086817 -0.51973337 0.32311726 236.68392710 |
| 47661 | | -0.42085373 -0.07856391 0.90372001 306.91790359 |
| 47662 | | -0.44430810 -0.85070849 -0.28086542 224.04826702 |
| 47663 | | Axis -0.91496466 0.40022553 0.05156744 |
| 47664 | | Axis point 0.00000000 298.35339518 -19.92897462 |
| 47665 | | Rotation angle (degrees) 106.51585001 |
| 47666 | | Shift along axis -82.16745292 |
| 47667 | | |
| 47668 | | |
| 47669 | | > fitmap #30 inMap #34 |
| 47670 | | |
| 47671 | | Fit molecule 4j87_yeast_alphaCOPI.cif (#30) to map |
| 47672 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2737 atoms |
| 47673 | | average map value = 0.009304, steps = 28 |
| 47674 | | shifted from previous position = 0.0215 |
| 47675 | | rotated from previous position = 0.0203 degrees |
| 47676 | | atoms outside contour = 1170, contour level = 0.0073311 |
| 47677 | | |
| 47678 | | Position of 4j87_yeast_alphaCOPI.cif (#30) relative to |
| 47679 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 47680 | | Matrix rotation and translation |
| 47681 | | 0.79080859 -0.51979573 0.32316277 236.68283087 |
| 47682 | | -0.42075840 -0.07823684 0.90379277 306.90558108 |
| 47683 | | -0.44450439 -0.85070053 -0.28057879 224.03446005 |
| 47684 | | Axis -0.91492010 0.40031735 0.05164525 |
| 47685 | | Axis point 0.00000000 298.38989078 -19.96369190 |
| 47686 | | Rotation angle (degrees) 106.49929346 |
| 47687 | | Shift along axis -82.11593248 |
| 47688 | | |
| 47689 | | |
| 47690 | | > hide #!37 models |
| 47691 | | |
| 47692 | | > show #!37 models |
| 47693 | | |
| 47694 | | > hide #!36 models |
| 47695 | | |
| 47696 | | > show #!36 models |
| 47697 | | |
| 47698 | | > hide #!35 models |
| 47699 | | |
| 47700 | | > show #!35 models |
| 47701 | | |
| 47702 | | > show #!3 models |
| 47703 | | |
| 47704 | | > show #7 models |
| 47705 | | |
| 47706 | | > hide #7 models |
| 47707 | | |
| 47708 | | > show #7 models |
| 47709 | | |
| 47710 | | > hide #7 models |
| 47711 | | |
| 47712 | | > show #7 models |
| 47713 | | |
| 47714 | | > hide #7 models |
| 47715 | | |
| 47716 | | > hide #!26.1 models |
| 47717 | | |
| 47718 | | > show #!26.1 models |
| 47719 | | |
| 47720 | | > hide #!26.1 models |
| 47721 | | |
| 47722 | | > show #!26.1 models |
| 47723 | | |
| 47724 | | > show #6 models |
| 47725 | | |
| 47726 | | > hide #6 models |
| 47727 | | |
| 47728 | | > show #6 models |
| 47729 | | |
| 47730 | | > hide #6 models |
| 47731 | | |
| 47732 | | > show #6 models |
| 47733 | | |
| 47734 | | > ui mousemode right select |
| 47735 | | |
| 47736 | | > hide #6 models |
| 47737 | | |
| 47738 | | > show #10 models |
| 47739 | | |
| 47740 | | > hide #10 models |
| 47741 | | |
| 47742 | | > show #10 models |
| 47743 | | |
| 47744 | | > hide #10 models |
| 47745 | | |
| 47746 | | > show #10 models |
| 47747 | | |
| 47748 | | > hide #10 models |
| 47749 | | |
| 47750 | | > show #7 models |
| 47751 | | |
| 47752 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 47753 | | > dataset/Chimera sessions/20240708_leaf_fitting_v33_labelled.cxs" |
| 47754 | | |
| 47755 | | > hide #!40 models |
| 47756 | | |
| 47757 | | > hide #!37 models |
| 47758 | | |
| 47759 | | > hide #!36 models |
| 47760 | | |
| 47761 | | > hide #!34 models |
| 47762 | | |
| 47763 | | > show #!34 models |
| 47764 | | |
| 47765 | | > hide #!35 models |
| 47766 | | |
| 47767 | | > hide #!34 models |
| 47768 | | |
| 47769 | | > hide #32.2 models |
| 47770 | | |
| 47771 | | > hide #32.1 models |
| 47772 | | |
| 47773 | | > hide #!32 models |
| 47774 | | |
| 47775 | | > show #!32 models |
| 47776 | | |
| 47777 | | > show #32.1 models |
| 47778 | | |
| 47779 | | > show #32.2 models |
| 47780 | | |
| 47781 | | > hide #!32 models |
| 47782 | | |
| 47783 | | > hide #!31 models |
| 47784 | | |
| 47785 | | > show #!31 models |
| 47786 | | |
| 47787 | | > hide #!31 models |
| 47788 | | |
| 47789 | | > hide #!30 models |
| 47790 | | |
| 47791 | | > hide #!29 models |
| 47792 | | |
| 47793 | | > hide #28 models |
| 47794 | | |
| 47795 | | > hide #27.2 models |
| 47796 | | |
| 47797 | | > show #27.2 models |
| 47798 | | |
| 47799 | | > hide #!27 models |
| 47800 | | |
| 47801 | | > hide #!26 models |
| 47802 | | |
| 47803 | | > show #!26 models |
| 47804 | | |
| 47805 | | > hide #!26 models |
| 47806 | | |
| 47807 | | > hide #!26.1 models |
| 47808 | | |
| 47809 | | > hide #!26.2 models |
| 47810 | | |
| 47811 | | > hide #26.3 models |
| 47812 | | |
| 47813 | | > hide #27.1 models |
| 47814 | | |
| 47815 | | > hide #27.2 models |
| 47816 | | |
| 47817 | | > hide #!24 models |
| 47818 | | |
| 47819 | | > hide #!25 models |
| 47820 | | |
| 47821 | | > hide #!9 models |
| 47822 | | |
| 47823 | | > hide #8 models |
| 47824 | | |
| 47825 | | > hide #7 models |
| 47826 | | |
| 47827 | | > hide #!4 models |
| 47828 | | |
| 47829 | | > show #27.2 models |
| 47830 | | |
| 47831 | | > show #!30 models |
| 47832 | | |
| 47833 | | > hide #!30 models |
| 47834 | | |
| 47835 | | > hide #!3 models |
| 47836 | | |
| 47837 | | > show #!3 models |
| 47838 | | |
| 47839 | | > hide #!3 models |
| 47840 | | |
| 47841 | | > show #!3 models |
| 47842 | | |
| 47843 | | > hide #!3 models |
| 47844 | | |
| 47845 | | > show #!34 models |
| 47846 | | |
| 47847 | | > fitmap #27.2 inMap #34 |
| 47848 | | |
| 47849 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) to map |
| 47850 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1407 atoms |
| 47851 | | average map value = 0.009081, steps = 48 |
| 47852 | | shifted from previous position = 0.00273 |
| 47853 | | rotated from previous position = 0.0242 degrees |
| 47854 | | atoms outside contour = 718, contour level = 0.0073311 |
| 47855 | | |
| 47856 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) relative to |
| 47857 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 47858 | | Matrix rotation and translation |
| 47859 | | 0.98956810 0.01433697 -0.14335073 -45.82491729 |
| 47860 | | 0.02422267 0.96431254 0.26365620 -113.39654732 |
| 47861 | | 0.14201494 -0.26437811 0.95390564 -31.26296098 |
| 47862 | | Axis -0.87962783 -0.47537740 0.01646812 |
| 47863 | | Axis point 0.00000000 -165.70831636 238.71953494 |
| 47864 | | Rotation angle (degrees) 17.46639833 |
| 47865 | | Shift along axis 93.70018662 |
| 47866 | | |
| 47867 | | |
| 47868 | | > fitmap #27.2 inMap #34 |
| 47869 | | |
| 47870 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) to map |
| 47871 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1407 atoms |
| 47872 | | average map value = 0.009081, steps = 48 |
| 47873 | | shifted from previous position = 0.000499 |
| 47874 | | rotated from previous position = 0.00154 degrees |
| 47875 | | atoms outside contour = 718, contour level = 0.0073311 |
| 47876 | | |
| 47877 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) relative to |
| 47878 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 47879 | | Matrix rotation and translation |
| 47880 | | 0.98956841 0.01434068 -0.14334821 -45.82626387 |
| 47881 | | 0.02422224 0.96430547 0.26368210 -113.40009857 |
| 47882 | | 0.14201285 -0.26440369 0.95389886 -31.25752997 |
| 47883 | | Axis -0.87965054 -0.47533566 0.01646006 |
| 47884 | | Axis point 0.00000000 -165.67596109 238.72518972 |
| 47885 | | Rotation angle (degrees) 17.46769067 |
| 47886 | | Shift along axis 93.69970795 |
| 47887 | | |
| 47888 | | |
| 47889 | | > fitmap #27.2 inMap #34 |
| 47890 | | |
| 47891 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) to map |
| 47892 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1407 atoms |
| 47893 | | average map value = 0.009081, steps = 48 |
| 47894 | | shifted from previous position = 0.00016 |
| 47895 | | rotated from previous position = 0.00118 degrees |
| 47896 | | atoms outside contour = 718, contour level = 0.0073311 |
| 47897 | | |
| 47898 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) relative to |
| 47899 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 47900 | | Matrix rotation and translation |
| 47901 | | 0.98956880 0.01435531 -0.14334403 -45.82936380 |
| 47902 | | 0.02420915 0.96430157 0.26369756 -113.40235253 |
| 47903 | | 0.14201233 -0.26441712 0.95389522 -31.25478351 |
| 47904 | | Axis -0.87966536 -0.47530985 0.01641326 |
| 47905 | | Axis point 0.00000000 -165.64407090 238.72526660 |
| 47906 | | Rotation angle (degrees) 17.46837305 |
| 47907 | | Shift along axis 93.70276671 |
| 47908 | | |
| 47909 | | |
| 47910 | | > fitmap #27.2 inMap #34 |
| 47911 | | |
| 47912 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) to map |
| 47913 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1407 atoms |
| 47914 | | average map value = 0.009081, steps = 48 |
| 47915 | | shifted from previous position = 0.000232 |
| 47916 | | rotated from previous position = 0.0016 degrees |
| 47917 | | atoms outside contour = 718, contour level = 0.0073311 |
| 47918 | | |
| 47919 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) relative to |
| 47920 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 47921 | | Matrix rotation and translation |
| 47922 | | 0.98956798 0.01433731 -0.14335150 -45.82514046 |
| 47923 | | 0.02422547 0.96430711 0.26367580 -113.39913149 |
| 47924 | | 0.14201527 -0.26439788 0.95390011 -31.25869132 |
| 47925 | | Axis -0.87964184 -0.47535137 0.01647125 |
| 47926 | | Axis point 0.00000000 -165.68626076 238.72206913 |
| 47927 | | Rotation angle (degrees) 17.46745538 |
| 47928 | | Shift along axis 93.69927359 |
| 47929 | | |
| 47930 | | |
| 47931 | | > hide #27.2 models |
| 47932 | | |
| 47933 | | > show #27.2 models |
| 47934 | | |
| 47935 | | > show #25.1 models |
| 47936 | | |
| 47937 | | > hide #!34 models |
| 47938 | | |
| 47939 | | > fitmap #25.1 inMap #34 |
| 47940 | | |
| 47941 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif A (#25.1) to map |
| 47942 | | relion_locres_filtered_20240326_GT.mrc (#34) using 3251 atoms |
| 47943 | | average map value = 0.01111, steps = 44 |
| 47944 | | shifted from previous position = 0.0255 |
| 47945 | | rotated from previous position = 0.0165 degrees |
| 47946 | | atoms outside contour = 1139, contour level = 0.0073311 |
| 47947 | | |
| 47948 | | Position of 5nzr_COPI_coat_leaf_2017.cif A (#25.1) relative to |
| 47949 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 47950 | | Matrix rotation and translation |
| 47951 | | -0.50785617 0.84619728 -0.16134517 226.54486618 |
| 47952 | | -0.85933572 -0.51073828 0.02623942 400.55682789 |
| 47953 | | -0.06020143 0.15197552 0.98654914 146.95470423 |
| 47954 | | Axis 0.07339469 -0.05903963 -0.99555389 |
| 47955 | | Axis point 229.78625014 128.44128536 0.00000000 |
| 47956 | | Rotation angle (degrees) 121.06583536 |
| 47957 | | Shift along axis -153.32286545 |
| 47958 | | |
| 47959 | | |
| 47960 | | > fitmap #25.1 inMap #34 |
| 47961 | | |
| 47962 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif A (#25.1) to map |
| 47963 | | relion_locres_filtered_20240326_GT.mrc (#34) using 3251 atoms |
| 47964 | | average map value = 0.01111, steps = 40 |
| 47965 | | shifted from previous position = 0.0282 |
| 47966 | | rotated from previous position = 0.0262 degrees |
| 47967 | | atoms outside contour = 1141, contour level = 0.0073311 |
| 47968 | | |
| 47969 | | Position of 5nzr_COPI_coat_leaf_2017.cif A (#25.1) relative to |
| 47970 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 47971 | | Matrix rotation and translation |
| 47972 | | -0.50777141 0.84631853 -0.16097555 226.47710304 |
| 47973 | | -0.85941279 -0.51059812 0.02644248 400.51128673 |
| 47974 | | -0.05981505 0.15177118 0.98660410 146.91059784 |
| 47975 | | Axis 0.07314968 -0.05904360 -0.99557168 |
| 47976 | | Axis point 229.73837123 128.43746238 0.00000000 |
| 47977 | | Rotation angle (degrees) 121.05647504 |
| 47978 | | Shift along axis -153.34093340 |
| 47979 | | |
| 47980 | | |
| 47981 | | > fitmap #25.1 inMap #34 |
| 47982 | | |
| 47983 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif A (#25.1) to map |
| 47984 | | relion_locres_filtered_20240326_GT.mrc (#34) using 3251 atoms |
| 47985 | | average map value = 0.01111, steps = 44 |
| 47986 | | shifted from previous position = 0.0343 |
| 47987 | | rotated from previous position = 0.0212 degrees |
| 47988 | | atoms outside contour = 1138, contour level = 0.0073311 |
| 47989 | | |
| 47990 | | Position of 5nzr_COPI_coat_leaf_2017.cif A (#25.1) relative to |
| 47991 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 47992 | | Matrix rotation and translation |
| 47993 | | -0.50786213 0.84621309 -0.16124345 226.53567475 |
| 47994 | | -0.85933666 -0.51073604 0.02625237 400.56152237 |
| 47995 | | -0.06013775 0.15189499 0.98656543 146.95013683 |
| 47996 | | Axis 0.07333980 -0.05901717 -0.99555926 |
| 47997 | | Axis point 229.78005640 128.45021909 0.00000000 |
| 47998 | | Rotation angle (degrees) 121.06541504 |
| 47999 | | Shift along axis -153.32349619 |
| 48000 | | |
| 48001 | | |
| 48002 | | > hide #25.1 models |
| 48003 | | |
| 48004 | | > fitmap #27.2 inMap #34 |
| 48005 | | |
| 48006 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) to map |
| 48007 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1407 atoms |
| 48008 | | average map value = 0.009081, steps = 48 |
| 48009 | | shifted from previous position = 0.000571 |
| 48010 | | rotated from previous position = 0.00345 degrees |
| 48011 | | atoms outside contour = 718, contour level = 0.0073311 |
| 48012 | | |
| 48013 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) relative to |
| 48014 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 48015 | | Matrix rotation and translation |
| 48016 | | 0.98956980 0.01437573 -0.14333510 -45.83431014 |
| 48017 | | 0.02419063 0.96429507 0.26372303 -113.40605851 |
| 48018 | | 0.14200855 -0.26443971 0.95388952 -31.25014824 |
| 48019 | | Axis -0.87969326 -0.47526049 0.01634743 |
| 48020 | | Axis point 0.00000000 -165.59514953 238.72926707 |
| 48021 | | Rotation angle (degrees) 17.46944224 |
| 48022 | | Shift along axis 93.70669324 |
| 48023 | | |
| 48024 | | |
| 48025 | | > show #!34 models |
| 48026 | | |
| 48027 | | > hide #!34 models |
| 48028 | | |
| 48029 | | > show #!3 models |
| 48030 | | |
| 48031 | | > select clear |
| 48032 | | |
| 48033 | | [Repeated 3 time(s)] |
| 48034 | | |
| 48035 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 48036 | | QTBUG which explains how to reproduce. |
| 48037 | | |
| 48038 | | > select clear |
| 48039 | | |
| 48040 | | > ui mousemode right select |
| 48041 | | |
| 48042 | | Drag select of 1 pseudobonds |
| 48043 | | |
| 48044 | | > delete sel |
| 48045 | | |
| 48046 | | > select clear |
| 48047 | | |
| 48048 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 48049 | | QTBUG which explains how to reproduce. |
| 48050 | | |
| 48051 | | > select clear |
| 48052 | | |
| 48053 | | [Repeated 1 time(s)] |
| 48054 | | |
| 48055 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 48056 | | QTBUG which explains how to reproduce. |
| 48057 | | |
| 48058 | | > hide #!3 models |
| 48059 | | |
| 48060 | | > show #!3 models |
| 48061 | | |
| 48062 | | > hide #27.2 models |
| 48063 | | |
| 48064 | | Drag select of 179 residues |
| 48065 | | |
| 48066 | | > delete sel |
| 48067 | | |
| 48068 | | Drag select of 1 pseudobonds |
| 48069 | | |
| 48070 | | > delete sel |
| 48071 | | |
| 48072 | | > undo |
| 48073 | | |
| 48074 | | [Repeated 1 time(s)]Undo failed, probably because structures have been |
| 48075 | | modified. |
| 48076 | | |
| 48077 | | > close #1 |
| 48078 | | |
| 48079 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/Structure |
| 48080 | | > files/alphafold/CopA-F8WHL2.pdb" |
| 48081 | | |
| 48082 | | CopA-F8WHL2.pdb title: |
| 48083 | | Alphafold monomer V2.0 prediction for coatomer subunit α (F8WHL2) [more |
| 48084 | | info...] |
| 48085 | | |
| 48086 | | Chain information for CopA-F8WHL2.pdb #1 |
| 48087 | | --- |
| 48088 | | Chain | Description | UniProt |
| 48089 | | A | coatomer subunit α | F8WHL2_MOUSE 1-1233 |
| 48090 | | |
| 48091 | | |
| 48092 | | > color #1 #0024ffff |
| 48093 | | |
| 48094 | | > ui tool show Matchmaker |
| 48095 | | |
| 48096 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 48097 | | QTBUG which explains how to reproduce. |
| 48098 | | |
| 48099 | | > matchmaker #1 to #3 |
| 48100 | | |
| 48101 | | Parameters |
| 48102 | | --- |
| 48103 | | Chain pairing | bb |
| 48104 | | Alignment algorithm | Needleman-Wunsch |
| 48105 | | Similarity matrix | BLOSUM-62 |
| 48106 | | SS fraction | 0.3 |
| 48107 | | Gap open (HH/SS/other) | 18/18/6 |
| 48108 | | Gap extend | 1 |
| 48109 | | SS matrix | | | H | S | O |
| 48110 | | ---|---|---|--- |
| 48111 | | H | 6 | -9 | -6 |
| 48112 | | S | | 6 | -6 |
| 48113 | | O | | | 4 |
| 48114 | | Iteration cutoff | 2 |
| 48115 | | |
| 48116 | | Matchmaker CopA_F8WHL2.pdb, chain A (#3) with CopA-F8WHL2.pdb, chain A (#1), |
| 48117 | | sequence alignment score = 5565.8 |
| 48118 | | RMSD between 598 pruned atom pairs is 0.000 angstroms; (across all 654 pairs: |
| 48119 | | 1.682) |
| 48120 | | |
| 48121 | | |
| 48122 | | > hide #1 models |
| 48123 | | |
| 48124 | | > show #1 models |
| 48125 | | |
| 48126 | | > hide #1 models |
| 48127 | | |
| 48128 | | > show #1 models |
| 48129 | | |
| 48130 | | > hide #1 models |
| 48131 | | |
| 48132 | | > show #1 models |
| 48133 | | |
| 48134 | | > hide #!3 models |
| 48135 | | |
| 48136 | | > show #!3 models |
| 48137 | | |
| 48138 | | > hide #32.2 models |
| 48139 | | |
| 48140 | | > hide #32.1 models |
| 48141 | | |
| 48142 | | > hide #1 models |
| 48143 | | |
| 48144 | | > show #1 models |
| 48145 | | |
| 48146 | | > hide #!3 models |
| 48147 | | |
| 48148 | | > show #!3 models |
| 48149 | | |
| 48150 | | > hide #!3 models |
| 48151 | | |
| 48152 | | > show #!3 models |
| 48153 | | |
| 48154 | | > show #!34 models |
| 48155 | | |
| 48156 | | > hide #!34 models |
| 48157 | | |
| 48158 | | > hide #!3 models |
| 48159 | | |
| 48160 | | Drag select of 156 residues |
| 48161 | | |
| 48162 | | > select up |
| 48163 | | |
| 48164 | | 1558 atoms, 1584 bonds, 194 residues, 1 model selected |
| 48165 | | |
| 48166 | | > select up |
| 48167 | | |
| 48168 | | 9810 atoms, 10032 bonds, 1233 residues, 1 model selected |
| 48169 | | |
| 48170 | | > select down |
| 48171 | | |
| 48172 | | 1558 atoms, 1584 bonds, 194 residues, 1 model selected |
| 48173 | | Drag select of 197 residues |
| 48174 | | |
| 48175 | | > select up |
| 48176 | | |
| 48177 | | 1710 atoms, 1739 bonds, 214 residues, 1 model selected |
| 48178 | | |
| 48179 | | > delete sel |
| 48180 | | |
| 48181 | | Drag select of 89 residues, 3 pseudobonds |
| 48182 | | |
| 48183 | | > select up |
| 48184 | | |
| 48185 | | 1348 atoms, 1375 bonds, 3 pseudobonds, 177 residues, 2 models selected |
| 48186 | | |
| 48187 | | > delete sel |
| 48188 | | |
| 48189 | | Drag select of 8 residues |
| 48190 | | |
| 48191 | | > delete sel |
| 48192 | | |
| 48193 | | > show #!3 models |
| 48194 | | |
| 48195 | | > hide #!3 models |
| 48196 | | |
| 48197 | | > show #!30 models |
| 48198 | | |
| 48199 | | > hide #!30 models |
| 48200 | | |
| 48201 | | > show #27.2 models |
| 48202 | | |
| 48203 | | > fitmap #1 inMap #34 |
| 48204 | | |
| 48205 | | Fit molecule CopA-F8WHL2.pdb (#1) to map |
| 48206 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6696 atoms |
| 48207 | | average map value = 0.007765, steps = 68 |
| 48208 | | shifted from previous position = 0.739 |
| 48209 | | rotated from previous position = 0.952 degrees |
| 48210 | | atoms outside contour = 3587, contour level = 0.0073311 |
| 48211 | | |
| 48212 | | Position of CopA-F8WHL2.pdb (#1) relative to |
| 48213 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 48214 | | Matrix rotation and translation |
| 48215 | | 0.74504812 0.59199968 0.30731039 209.86635543 |
| 48216 | | -0.12528750 0.57673472 -0.80726706 282.53055788 |
| 48217 | | -0.65513841 0.56295065 0.50386528 266.54966434 |
| 48218 | | Axis 0.75219668 0.52834728 -0.39376300 |
| 48219 | | Axis point 0.00000000 -289.36381832 369.37988482 |
| 48220 | | Rotation angle (degrees) 65.61763811 |
| 48221 | | Shift along axis 202.17763230 |
| 48222 | | |
| 48223 | | |
| 48224 | | > fitmap #1 inMap #34 |
| 48225 | | |
| 48226 | | Fit molecule CopA-F8WHL2.pdb (#1) to map |
| 48227 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6696 atoms |
| 48228 | | average map value = 0.007764, steps = 40 |
| 48229 | | shifted from previous position = 0.0353 |
| 48230 | | rotated from previous position = 0.0293 degrees |
| 48231 | | atoms outside contour = 3596, contour level = 0.0073311 |
| 48232 | | |
| 48233 | | Position of CopA-F8WHL2.pdb (#1) relative to |
| 48234 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 48235 | | Matrix rotation and translation |
| 48236 | | 0.74507195 0.59194685 0.30735439 209.84046391 |
| 48237 | | -0.12490471 0.57649071 -0.80750064 282.51296927 |
| 48238 | | -0.65518441 0.56325606 0.50346400 266.52699347 |
| 48239 | | Axis 0.75237628 0.52831502 -0.39346305 |
| 48240 | | Axis point 0.00000000 -289.07271763 369.13608189 |
| 48241 | | Rotation angle (degrees) 65.63718359 |
| 48242 | | Shift along axis 202.26631021 |
| 48243 | | |
| 48244 | | |
| 48245 | | > hide #27.2 models |
| 48246 | | |
| 48247 | | > show #27.2 models |
| 48248 | | |
| 48249 | | > hide #27.2 models |
| 48250 | | |
| 48251 | | > show #27.2 models |
| 48252 | | |
| 48253 | | > fitmap #1 inMap #34 |
| 48254 | | |
| 48255 | | Fit molecule CopA-F8WHL2.pdb (#1) to map |
| 48256 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6696 atoms |
| 48257 | | average map value = 0.007764, steps = 28 |
| 48258 | | shifted from previous position = 0.0364 |
| 48259 | | rotated from previous position = 0.0161 degrees |
| 48260 | | atoms outside contour = 3589, contour level = 0.0073311 |
| 48261 | | |
| 48262 | | Position of CopA-F8WHL2.pdb (#1) relative to |
| 48263 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 48264 | | Matrix rotation and translation |
| 48265 | | 0.74506354 0.59198084 0.30730929 209.86888132 |
| 48266 | | -0.12512801 0.57661233 -0.80737922 282.52551876 |
| 48267 | | -0.65515136 0.56309582 0.50368621 266.54833056 |
| 48268 | | Axis 0.75228442 0.52831619 -0.39363710 |
| 48269 | | Axis point 0.00000000 -289.24096229 369.28145085 |
| 48270 | | Rotation angle (degrees) 65.62663487 |
| 48271 | | Shift along axis 202.22058227 |
| 48272 | | |
| 48273 | | |
| 48274 | | > fitmap #1 inMap #34 |
| 48275 | | |
| 48276 | | Fit molecule CopA-F8WHL2.pdb (#1) to map |
| 48277 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6696 atoms |
| 48278 | | average map value = 0.007764, steps = 44 |
| 48279 | | shifted from previous position = 0.0344 |
| 48280 | | rotated from previous position = 0.0145 degrees |
| 48281 | | atoms outside contour = 3594, contour level = 0.0073311 |
| 48282 | | |
| 48283 | | Position of CopA-F8WHL2.pdb (#1) relative to |
| 48284 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 48285 | | Matrix rotation and translation |
| 48286 | | 0.74510831 0.59194177 0.30727603 209.84031429 |
| 48287 | | -0.12496767 0.57647605 -0.80750136 282.51167816 |
| 48288 | | -0.65513105 0.56327640 0.50351068 266.53073234 |
| 48289 | | Axis 0.75240063 0.52825170 -0.39350150 |
| 48290 | | Axis point 0.00000000 -289.06685996 369.16873400 |
| 48291 | | Rotation angle (degrees) 65.63503331 |
| 48292 | | Shift along axis 202.24101644 |
| 48293 | | |
| 48294 | | |
| 48295 | | > ui tool show Matchmaker |
| 48296 | | |
| 48297 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 48298 | | QTBUG which explains how to reproduce. |
| 48299 | | |
| 48300 | | > matchmaker #27.2 to #1 |
| 48301 | | |
| 48302 | | Parameters |
| 48303 | | --- |
| 48304 | | Chain pairing | bb |
| 48305 | | Alignment algorithm | Needleman-Wunsch |
| 48306 | | Similarity matrix | BLOSUM-62 |
| 48307 | | SS fraction | 0.3 |
| 48308 | | Gap open (HH/SS/other) | 18/18/6 |
| 48309 | | Gap extend | 1 |
| 48310 | | SS matrix | | | H | S | O |
| 48311 | | ---|---|---|--- |
| 48312 | | H | 6 | -9 | -6 |
| 48313 | | S | | 6 | -6 |
| 48314 | | O | | | 4 |
| 48315 | | Iteration cutoff | 2 |
| 48316 | | |
| 48317 | | Matchmaker CopA-F8WHL2.pdb, chain A (#1) with |
| 48318 | | 3mkq_yeast_alpha_betaprimeCOPI.cif B, chain B (#27.2), sequence alignment |
| 48319 | | score = 481.9 |
| 48320 | | RMSD between 128 pruned atom pairs is 0.920 angstroms; (across all 175 pairs: |
| 48321 | | 3.040) |
| 48322 | | |
| 48323 | | |
| 48324 | | > fitmap #1 inMap #34 |
| 48325 | | |
| 48326 | | Fit molecule CopA-F8WHL2.pdb (#1) to map |
| 48327 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6696 atoms |
| 48328 | | average map value = 0.007764, steps = 44 |
| 48329 | | shifted from previous position = 0.0344 |
| 48330 | | rotated from previous position = 0.0145 degrees |
| 48331 | | atoms outside contour = 3594, contour level = 0.0073311 |
| 48332 | | |
| 48333 | | Position of CopA-F8WHL2.pdb (#1) relative to |
| 48334 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 48335 | | Matrix rotation and translation |
| 48336 | | 0.74510831 0.59194177 0.30727603 209.84031429 |
| 48337 | | -0.12496767 0.57647605 -0.80750136 282.51167816 |
| 48338 | | -0.65513105 0.56327640 0.50351068 266.53073234 |
| 48339 | | Axis 0.75240063 0.52825170 -0.39350150 |
| 48340 | | Axis point 0.00000000 -289.06685996 369.16873400 |
| 48341 | | Rotation angle (degrees) 65.63503331 |
| 48342 | | Shift along axis 202.24101644 |
| 48343 | | |
| 48344 | | |
| 48345 | | > fitmap #27.2 inMap #34 |
| 48346 | | |
| 48347 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) to map |
| 48348 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1407 atoms |
| 48349 | | average map value = 0.009083, steps = 96 |
| 48350 | | shifted from previous position = 11.1 |
| 48351 | | rotated from previous position = 14.2 degrees |
| 48352 | | atoms outside contour = 717, contour level = 0.0073311 |
| 48353 | | |
| 48354 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) relative to |
| 48355 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 48356 | | Matrix rotation and translation |
| 48357 | | 0.98957852 0.01454291 -0.14325800 -45.84740165 |
| 48358 | | 0.02408635 0.96415153 0.26425685 -113.49444007 |
| 48359 | | 0.14196549 -0.26495346 0.95375336 -31.15818392 |
| 48360 | | Axis -0.88017677 -0.47438057 0.01587254 |
| 48361 | | Axis point 0.00000000 -164.91280797 238.91025494 |
| 48362 | | Rotation angle (degrees) 17.49528335 |
| 48363 | | Shift along axis 93.69881529 |
| 48364 | | |
| 48365 | | |
| 48366 | | > ui tool show Matchmaker |
| 48367 | | |
| 48368 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 48369 | | QTBUG which explains how to reproduce. |
| 48370 | | |
| 48371 | | > matchmaker #!1 to #27.2 |
| 48372 | | |
| 48373 | | Parameters |
| 48374 | | --- |
| 48375 | | Chain pairing | bb |
| 48376 | | Alignment algorithm | Needleman-Wunsch |
| 48377 | | Similarity matrix | BLOSUM-62 |
| 48378 | | SS fraction | 0.3 |
| 48379 | | Gap open (HH/SS/other) | 18/18/6 |
| 48380 | | Gap extend | 1 |
| 48381 | | SS matrix | | | H | S | O |
| 48382 | | ---|---|---|--- |
| 48383 | | H | 6 | -9 | -6 |
| 48384 | | S | | 6 | -6 |
| 48385 | | O | | | 4 |
| 48386 | | Iteration cutoff | 2 |
| 48387 | | |
| 48388 | | Matchmaker 3mkq_yeast_alpha_betaprimeCOPI.cif B, chain B (#27.2) with |
| 48389 | | CopA-F8WHL2.pdb, chain A (#1), sequence alignment score = 481.9 |
| 48390 | | RMSD between 128 pruned atom pairs is 0.920 angstroms; (across all 175 pairs: |
| 48391 | | 3.040) |
| 48392 | | |
| 48393 | | |
| 48394 | | > hide #27.2 models |
| 48395 | | |
| 48396 | | > show #27.2 models |
| 48397 | | |
| 48398 | | > hide #27.2 models |
| 48399 | | |
| 48400 | | > show #27.2 models |
| 48401 | | |
| 48402 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 48403 | | QTBUG which explains how to reproduce. |
| 48404 | | |
| 48405 | | > hide #27.2 models |
| 48406 | | |
| 48407 | | > show #27.2 models |
| 48408 | | |
| 48409 | | > hide #27.2 models |
| 48410 | | |
| 48411 | | Drag select of 13 residues |
| 48412 | | |
| 48413 | | > delete sel |
| 48414 | | |
| 48415 | | Drag select of 149 residues |
| 48416 | | Drag select of 154 residues |
| 48417 | | |
| 48418 | | > select up |
| 48419 | | |
| 48420 | | 1232 atoms, 1254 bonds, 155 residues, 1 model selected |
| 48421 | | |
| 48422 | | > delete sel |
| 48423 | | |
| 48424 | | > show #27.2 models |
| 48425 | | |
| 48426 | | > fitmap #1 inMap #34 |
| 48427 | | |
| 48428 | | Fit molecule CopA-F8WHL2.pdb (#1) to map |
| 48429 | | relion_locres_filtered_20240326_GT.mrc (#34) using 5369 atoms |
| 48430 | | average map value = 0.008503, steps = 88 |
| 48431 | | shifted from previous position = 9.87 |
| 48432 | | rotated from previous position = 14.7 degrees |
| 48433 | | atoms outside contour = 2569, contour level = 0.0073311 |
| 48434 | | |
| 48435 | | Position of CopA-F8WHL2.pdb (#1) relative to |
| 48436 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 48437 | | Matrix rotation and translation |
| 48438 | | 0.74613401 0.59321950 0.30228241 209.86370296 |
| 48439 | | -0.11997346 0.56637890 -0.81536575 282.25496270 |
| 48440 | | -0.65489725 0.57210625 0.49376516 266.21520350 |
| 48441 | | Axis 0.75806648 0.52296970 -0.38966385 |
| 48442 | | Axis point 0.00000000 -280.46538443 365.14298706 |
| 48443 | | Rotation angle (degrees) 66.22543800 |
| 48444 | | Shift along axis 202.96698955 |
| 48445 | | |
| 48446 | | |
| 48447 | | > show #!34 models |
| 48448 | | |
| 48449 | | > hide #27.2 models |
| 48450 | | |
| 48451 | | > show #27.2 models |
| 48452 | | |
| 48453 | | > hide #27.2 models |
| 48454 | | |
| 48455 | | > show #27.2 models |
| 48456 | | |
| 48457 | | > hide #27.2 models |
| 48458 | | |
| 48459 | | > hide #!1 models |
| 48460 | | |
| 48461 | | > show #!1 models |
| 48462 | | |
| 48463 | | > hide #!34 models |
| 48464 | | |
| 48465 | | > show #!30 models |
| 48466 | | |
| 48467 | | > fitmap #30 inMap #34 |
| 48468 | | |
| 48469 | | Fit molecule 4j87_yeast_alphaCOPI.cif (#30) to map |
| 48470 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2737 atoms |
| 48471 | | average map value = 0.009303, steps = 28 |
| 48472 | | shifted from previous position = 0.0341 |
| 48473 | | rotated from previous position = 0.0274 degrees |
| 48474 | | atoms outside contour = 1174, contour level = 0.0073311 |
| 48475 | | |
| 48476 | | Position of 4j87_yeast_alphaCOPI.cif (#30) relative to |
| 48477 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 48478 | | Matrix rotation and translation |
| 48479 | | 0.79102377 -0.51948810 0.32313081 236.69401192 |
| 48480 | | -0.42077528 -0.07856116 0.90375678 306.92760494 |
| 48481 | | -0.44410536 -0.85085854 -0.28073150 224.06164756 |
| 48482 | | Axis -0.91502074 0.40010879 0.05147811 |
| 48483 | | Axis point 0.00000000 298.35529009 -19.95959041 |
| 48484 | | Rotation angle (degrees) 106.50711717 |
| 48485 | | Shift along axis -82.24122865 |
| 48486 | | |
| 48487 | | |
| 48488 | | > hide #!1 models |
| 48489 | | |
| 48490 | | > show #!1 models |
| 48491 | | |
| 48492 | | > hide #!30 models |
| 48493 | | |
| 48494 | | > show #!30 models |
| 48495 | | |
| 48496 | | > hide #!30 models |
| 48497 | | |
| 48498 | | > show #!30 models |
| 48499 | | |
| 48500 | | > hide #!30 models |
| 48501 | | |
| 48502 | | > ui mousemode right select |
| 48503 | | |
| 48504 | | Drag select of 1 residues |
| 48505 | | Drag select of 31 residues |
| 48506 | | |
| 48507 | | > select up |
| 48508 | | |
| 48509 | | 458 atoms, 466 bonds, 53 residues, 1 model selected |
| 48510 | | |
| 48511 | | > select up |
| 48512 | | |
| 48513 | | 5369 atoms, 5500 bonds, 666 residues, 1 model selected |
| 48514 | | |
| 48515 | | > select down |
| 48516 | | |
| 48517 | | 458 atoms, 466 bonds, 53 residues, 1 model selected |
| 48518 | | |
| 48519 | | > delete sel |
| 48520 | | |
| 48521 | | Drag select of 130 residues, 5 pseudobonds |
| 48522 | | |
| 48523 | | > delete sel |
| 48524 | | |
| 48525 | | Drag select of 103 residues, 9 pseudobonds |
| 48526 | | |
| 48527 | | > select up |
| 48528 | | |
| 48529 | | 1024 atoms, 1036 bonds, 9 pseudobonds, 129 residues, 2 models selected |
| 48530 | | |
| 48531 | | > delete sel |
| 48532 | | |
| 48533 | | > fitmap #1 inMap #34 |
| 48534 | | |
| 48535 | | Fit molecule CopA-F8WHL2.pdb (#1) to map |
| 48536 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2828 atoms |
| 48537 | | average map value = 0.008232, steps = 88 |
| 48538 | | shifted from previous position = 1.5 |
| 48539 | | rotated from previous position = 2.26 degrees |
| 48540 | | atoms outside contour = 1434, contour level = 0.0073311 |
| 48541 | | |
| 48542 | | Position of CopA-F8WHL2.pdb (#1) relative to |
| 48543 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 48544 | | Matrix rotation and translation |
| 48545 | | 0.76973912 0.57262498 0.28213884 209.07872450 |
| 48546 | | -0.11316399 0.55737848 -0.82251027 282.30528869 |
| 48547 | | -0.62824804 0.60119037 0.49383654 267.66031403 |
| 48548 | | Axis 0.78064812 0.49918627 -0.37603401 |
| 48549 | | Axis point 0.00000000 -266.67800857 363.23324447 |
| 48550 | | Rotation angle (degrees) 65.76519291 |
| 48551 | | Shift along axis 203.49045495 |
| 48552 | | |
| 48553 | | |
| 48554 | | > show #!34 models |
| 48555 | | |
| 48556 | | > show #!30 models |
| 48557 | | |
| 48558 | | > show #27.2 models |
| 48559 | | |
| 48560 | | > fitmap #1 inMap #34 |
| 48561 | | |
| 48562 | | Fit molecule CopA-F8WHL2.pdb (#1) to map |
| 48563 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2828 atoms |
| 48564 | | average map value = 0.008232, steps = 44 |
| 48565 | | shifted from previous position = 0.0283 |
| 48566 | | rotated from previous position = 0.0435 degrees |
| 48567 | | atoms outside contour = 1427, contour level = 0.0073311 |
| 48568 | | |
| 48569 | | Position of CopA-F8WHL2.pdb (#1) relative to |
| 48570 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 48571 | | Matrix rotation and translation |
| 48572 | | 0.76961659 0.57283286 0.28205111 209.09137949 |
| 48573 | | -0.11376863 0.55769249 -0.82221395 282.32528611 |
| 48574 | | -0.62828895 0.60070093 0.49437980 267.68501324 |
| 48575 | | Axis 0.78035887 0.49925118 -0.37654787 |
| 48576 | | Axis point 0.00000000 -267.04771184 363.57213507 |
| 48577 | | Rotation angle (degrees) 65.74210797 |
| 48578 | | Shift along axis 203.32132493 |
| 48579 | | |
| 48580 | | |
| 48581 | | > fitmap #27.2 inMap #34 |
| 48582 | | |
| 48583 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) to map |
| 48584 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1407 atoms |
| 48585 | | average map value = 0.009083, steps = 48 |
| 48586 | | shifted from previous position = 0.00597 |
| 48587 | | rotated from previous position = 0.0186 degrees |
| 48588 | | atoms outside contour = 717, contour level = 0.0073311 |
| 48589 | | |
| 48590 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) relative to |
| 48591 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 48592 | | Matrix rotation and translation |
| 48593 | | 0.98958692 0.01431371 -0.14322309 -45.81333740 |
| 48594 | | 0.02426352 0.96421466 0.26401019 -113.45822597 |
| 48595 | | 0.14187677 -0.26473613 0.95382691 -31.20533647 |
| 48596 | | Axis -0.88007902 -0.47453835 0.01656110 |
| 48597 | | Axis point 0.00000000 -165.41785940 239.01187615 |
| 48598 | | Rotation angle (degrees) 17.48145353 |
| 48599 | | Shift along axis 93.64284212 |
| 48600 | | |
| 48601 | | |
| 48602 | | > fitmap #30 inMap #34 |
| 48603 | | |
| 48604 | | Fit molecule 4j87_yeast_alphaCOPI.cif (#30) to map |
| 48605 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2737 atoms |
| 48606 | | average map value = 0.009304, steps = 28 |
| 48607 | | shifted from previous position = 0.0504 |
| 48608 | | rotated from previous position = 0.047 degrees |
| 48609 | | atoms outside contour = 1169, contour level = 0.0073311 |
| 48610 | | |
| 48611 | | Position of 4j87_yeast_alphaCOPI.cif (#30) relative to |
| 48612 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 48613 | | Matrix rotation and translation |
| 48614 | | 0.79064076 -0.52013247 0.32303159 236.67421339 |
| 48615 | | -0.42073055 -0.07822749 0.90380655 306.89666144 |
| 48616 | | -0.44482918 -0.85049555 -0.28068547 224.01557023 |
| 48617 | | Axis -0.91485786 0.40043472 0.05183749 |
| 48618 | | Axis point 0.00000000 298.39182963 -19.92191304 |
| 48619 | | Rotation angle (degrees) 106.50721587 |
| 48620 | | Shift along axis -82.01878235 |
| 48621 | | |
| 48622 | | |
| 48623 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 48624 | | > dataset/Chimera sessions/20240708_leaf_fitting_v34_labelled.cxs" |
| 48625 | | |
| 48626 | | > hide #!30 models |
| 48627 | | |
| 48628 | | > hide #27.2 models |
| 48629 | | |
| 48630 | | > hide #!1 models |
| 48631 | | |
| 48632 | | > show #7 models |
| 48633 | | |
| 48634 | | > hide #7 models |
| 48635 | | |
| 48636 | | > show #27.1 models |
| 48637 | | |
| 48638 | | > hide #!34 models |
| 48639 | | |
| 48640 | | > show #7 models |
| 48641 | | |
| 48642 | | > ui tool show Matchmaker |
| 48643 | | |
| 48644 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 48645 | | QTBUG which explains how to reproduce. |
| 48646 | | |
| 48647 | | > matchmaker #7 to #27.1 |
| 48648 | | |
| 48649 | | Parameters |
| 48650 | | --- |
| 48651 | | Chain pairing | bb |
| 48652 | | Alignment algorithm | Needleman-Wunsch |
| 48653 | | Similarity matrix | BLOSUM-62 |
| 48654 | | SS fraction | 0.3 |
| 48655 | | Gap open (HH/SS/other) | 18/18/6 |
| 48656 | | Gap extend | 1 |
| 48657 | | SS matrix | | | H | S | O |
| 48658 | | ---|---|---|--- |
| 48659 | | H | 6 | -9 | -6 |
| 48660 | | S | | 6 | -6 |
| 48661 | | O | | | 4 |
| 48662 | | Iteration cutoff | 2 |
| 48663 | | |
| 48664 | | Matchmaker 3mkq_yeast_alpha_betaprimeCOPI.cif A, chain A (#27.1) with |
| 48665 | | CopBprime_O55029.pdb, chain A (#7), sequence alignment score = 2455.4 |
| 48666 | | RMSD between 517 pruned atom pairs is 0.958 angstroms; (across all 790 pairs: |
| 48667 | | 3.624) |
| 48668 | | |
| 48669 | | |
| 48670 | | > fitmap #27.1 inMap #34 |
| 48671 | | |
| 48672 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 48673 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms |
| 48674 | | average map value = 0.009129, steps = 48 |
| 48675 | | shifted from previous position = 0.0194 |
| 48676 | | rotated from previous position = 0.0607 degrees |
| 48677 | | atoms outside contour = 2945, contour level = 0.0073311 |
| 48678 | | |
| 48679 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to |
| 48680 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 48681 | | Matrix rotation and translation |
| 48682 | | 0.99556882 0.00314645 0.09398307 -80.48372282 |
| 48683 | | -0.00470546 0.99985491 0.01637118 -75.53389376 |
| 48684 | | -0.09391792 -0.01674087 0.99543918 -68.55547662 |
| 48685 | | Axis -0.17339992 0.98399275 -0.04111857 |
| 48686 | | Axis point -800.05814897 0.00000000 924.82289501 |
| 48687 | | Rotation angle (degrees) 5.47888119 |
| 48688 | | Shift along axis -57.55002917 |
| 48689 | | |
| 48690 | | |
| 48691 | | > fitmap #7 inMap #34 |
| 48692 | | |
| 48693 | | Fit molecule CopBprime_O55029.pdb (#7) to map |
| 48694 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6695 atoms |
| 48695 | | average map value = 0.009017, steps = 60 |
| 48696 | | shifted from previous position = 0.998 |
| 48697 | | rotated from previous position = 4.89 degrees |
| 48698 | | atoms outside contour = 3026, contour level = 0.0073311 |
| 48699 | | |
| 48700 | | Position of CopBprime_O55029.pdb (#7) relative to |
| 48701 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 48702 | | Matrix rotation and translation |
| 48703 | | -0.13119013 -0.23155876 -0.96393448 237.20355678 |
| 48704 | | 0.00439169 -0.97246439 0.23301013 213.62738725 |
| 48705 | | -0.99134750 0.02633533 0.12859467 275.46492911 |
| 48706 | | Axis -0.65639645 0.08706337 0.74937552 |
| 48707 | | Axis point 228.27373609 105.75304677 -0.00000000 |
| 48708 | | Rotation angle (degrees) 170.94216411 |
| 48709 | | Shift along axis 69.32622238 |
| 48710 | | |
| 48711 | | |
| 48712 | | > hide #!25 models |
| 48713 | | |
| 48714 | | > show #!25 models |
| 48715 | | |
| 48716 | | > hide #!25 models |
| 48717 | | |
| 48718 | | > hide #27.1 models |
| 48719 | | |
| 48720 | | > show #27.1 models |
| 48721 | | |
| 48722 | | > hide #27.1 models |
| 48723 | | |
| 48724 | | > show #27.1 models |
| 48725 | | |
| 48726 | | > hide #27.1 models |
| 48727 | | |
| 48728 | | > show #27.1 models |
| 48729 | | |
| 48730 | | > show #!34 models |
| 48731 | | |
| 48732 | | > hide #27.1 models |
| 48733 | | |
| 48734 | | > show #27.1 models |
| 48735 | | |
| 48736 | | > hide #27.1 models |
| 48737 | | |
| 48738 | | > show #27.1 models |
| 48739 | | |
| 48740 | | > hide #27.1 models |
| 48741 | | |
| 48742 | | > show #27.1 models |
| 48743 | | |
| 48744 | | > fitmap #7 inMap #34 |
| 48745 | | |
| 48746 | | Fit molecule CopBprime_O55029.pdb (#7) to map |
| 48747 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6695 atoms |
| 48748 | | average map value = 0.009017, steps = 60 |
| 48749 | | shifted from previous position = 0.998 |
| 48750 | | rotated from previous position = 4.89 degrees |
| 48751 | | atoms outside contour = 3026, contour level = 0.0073311 |
| 48752 | | |
| 48753 | | Position of CopBprime_O55029.pdb (#7) relative to |
| 48754 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 48755 | | Matrix rotation and translation |
| 48756 | | -0.13119013 -0.23155876 -0.96393448 237.20355678 |
| 48757 | | 0.00439169 -0.97246439 0.23301013 213.62738725 |
| 48758 | | -0.99134750 0.02633533 0.12859467 275.46492911 |
| 48759 | | Axis -0.65639645 0.08706337 0.74937552 |
| 48760 | | Axis point 228.27373609 105.75304677 0.00000000 |
| 48761 | | Rotation angle (degrees) 170.94216411 |
| 48762 | | Shift along axis 69.32622238 |
| 48763 | | |
| 48764 | | |
| 48765 | | > fitmap #7 inMap #34 |
| 48766 | | |
| 48767 | | Fit molecule CopBprime_O55029.pdb (#7) to map |
| 48768 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6695 atoms |
| 48769 | | average map value = 0.009017, steps = 60 |
| 48770 | | shifted from previous position = 0.998 |
| 48771 | | rotated from previous position = 4.89 degrees |
| 48772 | | atoms outside contour = 3026, contour level = 0.0073311 |
| 48773 | | |
| 48774 | | Position of CopBprime_O55029.pdb (#7) relative to |
| 48775 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 48776 | | Matrix rotation and translation |
| 48777 | | -0.13119013 -0.23155876 -0.96393448 237.20355678 |
| 48778 | | 0.00439169 -0.97246439 0.23301013 213.62738725 |
| 48779 | | -0.99134750 0.02633533 0.12859467 275.46492911 |
| 48780 | | Axis -0.65639645 0.08706337 0.74937552 |
| 48781 | | Axis point 228.27373609 105.75304677 -0.00000000 |
| 48782 | | Rotation angle (degrees) 170.94216411 |
| 48783 | | Shift along axis 69.32622238 |
| 48784 | | |
| 48785 | | |
| 48786 | | > fitmap #7 inMap #34 |
| 48787 | | |
| 48788 | | Fit molecule CopBprime_O55029.pdb (#7) to map |
| 48789 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6695 atoms |
| 48790 | | average map value = 0.009017, steps = 60 |
| 48791 | | shifted from previous position = 0.998 |
| 48792 | | rotated from previous position = 4.89 degrees |
| 48793 | | atoms outside contour = 3026, contour level = 0.0073311 |
| 48794 | | |
| 48795 | | Position of CopBprime_O55029.pdb (#7) relative to |
| 48796 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 48797 | | Matrix rotation and translation |
| 48798 | | -0.13119013 -0.23155876 -0.96393448 237.20355678 |
| 48799 | | 0.00439169 -0.97246439 0.23301013 213.62738725 |
| 48800 | | -0.99134750 0.02633533 0.12859467 275.46492911 |
| 48801 | | Axis -0.65639645 0.08706337 0.74937552 |
| 48802 | | Axis point 228.27373609 105.75304677 -0.00000000 |
| 48803 | | Rotation angle (degrees) 170.94216411 |
| 48804 | | Shift along axis 69.32622238 |
| 48805 | | |
| 48806 | | |
| 48807 | | > fitmap #7 inMap #34 |
| 48808 | | |
| 48809 | | Fit molecule CopBprime_O55029.pdb (#7) to map |
| 48810 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6695 atoms |
| 48811 | | average map value = 0.009017, steps = 60 |
| 48812 | | shifted from previous position = 0.998 |
| 48813 | | rotated from previous position = 4.89 degrees |
| 48814 | | atoms outside contour = 3026, contour level = 0.0073311 |
| 48815 | | |
| 48816 | | Position of CopBprime_O55029.pdb (#7) relative to |
| 48817 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 48818 | | Matrix rotation and translation |
| 48819 | | -0.13119013 -0.23155876 -0.96393448 237.20355678 |
| 48820 | | 0.00439169 -0.97246439 0.23301013 213.62738725 |
| 48821 | | -0.99134750 0.02633533 0.12859467 275.46492911 |
| 48822 | | Axis -0.65639645 0.08706337 0.74937552 |
| 48823 | | Axis point 228.27373609 105.75304677 0.00000000 |
| 48824 | | Rotation angle (degrees) 170.94216411 |
| 48825 | | Shift along axis 69.32622238 |
| 48826 | | |
| 48827 | | |
| 48828 | | > fitmap #7 inMap #34 |
| 48829 | | |
| 48830 | | Fit molecule CopBprime_O55029.pdb (#7) to map |
| 48831 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6695 atoms |
| 48832 | | average map value = 0.009017, steps = 60 |
| 48833 | | shifted from previous position = 0.998 |
| 48834 | | rotated from previous position = 4.89 degrees |
| 48835 | | atoms outside contour = 3026, contour level = 0.0073311 |
| 48836 | | |
| 48837 | | Position of CopBprime_O55029.pdb (#7) relative to |
| 48838 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 48839 | | Matrix rotation and translation |
| 48840 | | -0.13119013 -0.23155876 -0.96393448 237.20355678 |
| 48841 | | 0.00439169 -0.97246439 0.23301013 213.62738725 |
| 48842 | | -0.99134750 0.02633533 0.12859467 275.46492911 |
| 48843 | | Axis -0.65639645 0.08706337 0.74937552 |
| 48844 | | Axis point 228.27373609 105.75304677 0.00000000 |
| 48845 | | Rotation angle (degrees) 170.94216411 |
| 48846 | | Shift along axis 69.32622238 |
| 48847 | | |
| 48848 | | |
| 48849 | | > fitmap #7 inMap #34 |
| 48850 | | |
| 48851 | | Fit molecule CopBprime_O55029.pdb (#7) to map |
| 48852 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6695 atoms |
| 48853 | | average map value = 0.009017, steps = 60 |
| 48854 | | shifted from previous position = 0.998 |
| 48855 | | rotated from previous position = 4.89 degrees |
| 48856 | | atoms outside contour = 3026, contour level = 0.0073311 |
| 48857 | | |
| 48858 | | Position of CopBprime_O55029.pdb (#7) relative to |
| 48859 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 48860 | | Matrix rotation and translation |
| 48861 | | -0.13119013 -0.23155876 -0.96393448 237.20355678 |
| 48862 | | 0.00439169 -0.97246439 0.23301013 213.62738725 |
| 48863 | | -0.99134750 0.02633533 0.12859467 275.46492911 |
| 48864 | | Axis -0.65639645 0.08706337 0.74937552 |
| 48865 | | Axis point 228.27373609 105.75304677 0.00000000 |
| 48866 | | Rotation angle (degrees) 170.94216411 |
| 48867 | | Shift along axis 69.32622238 |
| 48868 | | |
| 48869 | | |
| 48870 | | > fitmap #7 inMap #34 |
| 48871 | | |
| 48872 | | Fit molecule CopBprime_O55029.pdb (#7) to map |
| 48873 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6695 atoms |
| 48874 | | average map value = 0.009017, steps = 60 |
| 48875 | | shifted from previous position = 0.998 |
| 48876 | | rotated from previous position = 4.89 degrees |
| 48877 | | atoms outside contour = 3026, contour level = 0.0073311 |
| 48878 | | |
| 48879 | | Position of CopBprime_O55029.pdb (#7) relative to |
| 48880 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 48881 | | Matrix rotation and translation |
| 48882 | | -0.13119013 -0.23155876 -0.96393448 237.20355678 |
| 48883 | | 0.00439169 -0.97246439 0.23301013 213.62738725 |
| 48884 | | -0.99134750 0.02633533 0.12859467 275.46492911 |
| 48885 | | Axis -0.65639645 0.08706337 0.74937552 |
| 48886 | | Axis point 228.27373609 105.75304677 0.00000000 |
| 48887 | | Rotation angle (degrees) 170.94216411 |
| 48888 | | Shift along axis 69.32622238 |
| 48889 | | |
| 48890 | | |
| 48891 | | > fitmap #7 inMap #34 |
| 48892 | | |
| 48893 | | Fit molecule CopBprime_O55029.pdb (#7) to map |
| 48894 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6695 atoms |
| 48895 | | average map value = 0.009017, steps = 60 |
| 48896 | | shifted from previous position = 0.998 |
| 48897 | | rotated from previous position = 4.89 degrees |
| 48898 | | atoms outside contour = 3026, contour level = 0.0073311 |
| 48899 | | |
| 48900 | | Position of CopBprime_O55029.pdb (#7) relative to |
| 48901 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 48902 | | Matrix rotation and translation |
| 48903 | | -0.13119013 -0.23155876 -0.96393448 237.20355678 |
| 48904 | | 0.00439169 -0.97246439 0.23301013 213.62738725 |
| 48905 | | -0.99134750 0.02633533 0.12859467 275.46492911 |
| 48906 | | Axis -0.65639645 0.08706337 0.74937552 |
| 48907 | | Axis point 228.27373609 105.75304677 0.00000000 |
| 48908 | | Rotation angle (degrees) 170.94216411 |
| 48909 | | Shift along axis 69.32622238 |
| 48910 | | |
| 48911 | | |
| 48912 | | > hide #7 models |
| 48913 | | |
| 48914 | | > show #7 models |
| 48915 | | |
| 48916 | | > hide #7 models |
| 48917 | | |
| 48918 | | > show #7 models |
| 48919 | | |
| 48920 | | > fitmap #27.1 inMap #34 |
| 48921 | | |
| 48922 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 48923 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms |
| 48924 | | average map value = 0.009129, steps = 28 |
| 48925 | | shifted from previous position = 0.0431 |
| 48926 | | rotated from previous position = 0.0479 degrees |
| 48927 | | atoms outside contour = 2939, contour level = 0.0073311 |
| 48928 | | |
| 48929 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to |
| 48930 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 48931 | | Matrix rotation and translation |
| 48932 | | 0.99562004 0.00345097 0.09342818 -80.41290975 |
| 48933 | | -0.00494862 0.99986288 0.01580295 -75.40022926 |
| 48934 | | -0.09336083 -0.01619607 0.99550060 -68.64017862 |
| 48935 | | Axis -0.16868570 0.98467481 -0.04427917 |
| 48936 | | Axis point -807.22349213 0.00000000 926.92051736 |
| 48937 | | Rotation angle (degrees) 5.44257527 |
| 48938 | | Shift along axis -57.64086882 |
| 48939 | | |
| 48940 | | |
| 48941 | | > fitmap #27.1 inMap #34 |
| 48942 | | |
| 48943 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 48944 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms |
| 48945 | | average map value = 0.009129, steps = 28 |
| 48946 | | shifted from previous position = 0.0412 |
| 48947 | | rotated from previous position = 0.0352 degrees |
| 48948 | | atoms outside contour = 2944, contour level = 0.0073311 |
| 48949 | | |
| 48950 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to |
| 48951 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 48952 | | Matrix rotation and translation |
| 48953 | | 0.99557079 0.00346147 0.09395116 -80.51283445 |
| 48954 | | -0.00499735 0.99985762 0.01611732 -75.48425279 |
| 48955 | | -0.09388199 -0.01651544 0.99544634 -68.57582442 |
| 48956 | | Axis -0.17100048 0.98427338 -0.04432547 |
| 48957 | | Axis point -802.39712605 0.00000000 923.77388963 |
| 48958 | | Rotation angle (degrees) 5.47533051 |
| 48959 | | Shift along axis -57.48975145 |
| 48960 | | |
| 48961 | | |
| 48962 | | > fitmap #27.1 inMap #34 |
| 48963 | | |
| 48964 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 48965 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms |
| 48966 | | average map value = 0.00913, steps = 44 |
| 48967 | | shifted from previous position = 0.0408 |
| 48968 | | rotated from previous position = 0.0274 degrees |
| 48969 | | atoms outside contour = 2939, contour level = 0.0073311 |
| 48970 | | |
| 48971 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to |
| 48972 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 48973 | | Matrix rotation and translation |
| 48974 | | 0.99558674 0.00368020 0.09377362 -80.49497003 |
| 48975 | | -0.00517595 0.99986315 0.01571245 -75.38038534 |
| 48976 | | -0.09370297 -0.01612848 0.99546955 -68.63492522 |
| 48977 | | Axis -0.16726043 0.98481456 -0.04652137 |
| 48978 | | Axis point -805.69492318 0.00000000 923.18001399 |
| 48979 | | Rotation angle (degrees) 5.46189300 |
| 48980 | | Shift along axis -57.57908693 |
| 48981 | | |
| 48982 | | |
| 48983 | | > fitmap #27.1 inMap #34 |
| 48984 | | |
| 48985 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 48986 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms |
| 48987 | | average map value = 0.009129, steps = 44 |
| 48988 | | shifted from previous position = 0.034 |
| 48989 | | rotated from previous position = 0.0358 degrees |
| 48990 | | atoms outside contour = 2942, contour level = 0.0073311 |
| 48991 | | |
| 48992 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to |
| 48993 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 48994 | | Matrix rotation and translation |
| 48995 | | 0.99555643 0.00340933 0.09410514 -80.53037149 |
| 48996 | | -0.00495438 0.99985667 0.01618957 -75.49091907 |
| 48997 | | -0.09403646 -0.01658387 0.99543062 -68.56837507 |
| 48998 | | Axis -0.17144703 0.98422131 -0.04375295 |
| 48999 | | Axis point -800.75273762 0.00000000 922.68257308 |
| 49000 | | Rotation angle (degrees) 5.48464047 |
| 49001 | | Shift along axis -57.49301012 |
| 49002 | | |
| 49003 | | |
| 49004 | | > fitmap #27.1 inMap #34 |
| 49005 | | |
| 49006 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 49007 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms |
| 49008 | | average map value = 0.00913, steps = 44 |
| 49009 | | shifted from previous position = 0.0336 |
| 49010 | | rotated from previous position = 0.0327 degrees |
| 49011 | | atoms outside contour = 2940, contour level = 0.0073311 |
| 49012 | | |
| 49013 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to |
| 49014 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 49015 | | Matrix rotation and translation |
| 49016 | | 0.99557579 0.00369621 0.09388926 -80.51670044 |
| 49017 | | -0.00519484 0.99986290 0.01572232 -75.38146501 |
| 49018 | | -0.09381827 -0.01614050 0.99545850 -68.62961875 |
| 49019 | | Axis -0.16717103 0.98482376 -0.04664768 |
| 49020 | | Axis point -804.78365522 0.00000000 922.16302415 |
| 49021 | | Rotation angle (degrees) 5.46859046 |
| 49022 | | Shift along axis -57.57598531 |
| 49023 | | |
| 49024 | | |
| 49025 | | > fitmap #27.1 inMap #34 |
| 49026 | | |
| 49027 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 49028 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms |
| 49029 | | average map value = 0.009129, steps = 64 |
| 49030 | | shifted from previous position = 0.00589 |
| 49031 | | rotated from previous position = 0.00894 degrees |
| 49032 | | atoms outside contour = 2939, contour level = 0.0073311 |
| 49033 | | |
| 49034 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to |
| 49035 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 49036 | | Matrix rotation and translation |
| 49037 | | 0.99557361 0.00357088 0.09391721 -80.50555370 |
| 49038 | | -0.00507885 0.99986192 0.01582224 -75.39753821 |
| 49039 | | -0.09384774 -0.01622920 0.99545428 -68.62415739 |
| 49040 | | Axis -0.16809268 0.98472688 -0.04536323 |
| 49041 | | Axis point -803.75002633 0.00000000 922.40898965 |
| 49042 | | Rotation angle (degrees) 5.47080806 |
| 49043 | | Shift along axis -57.60057463 |
| 49044 | | |
| 49045 | | |
| 49046 | | > hide #!34 models |
| 49047 | | |
| 49048 | | > hide #27.1 models |
| 49049 | | |
| 49050 | | > show #27.1 models |
| 49051 | | |
| 49052 | | > hide #27.1 models |
| 49053 | | |
| 49054 | | > show #27.1 models |
| 49055 | | |
| 49056 | | > hide #7 models |
| 49057 | | |
| 49058 | | > show #7 models |
| 49059 | | |
| 49060 | | > hide #7 models |
| 49061 | | |
| 49062 | | > show #7 models |
| 49063 | | |
| 49064 | | > hide #7 models |
| 49065 | | |
| 49066 | | > hide #27.1 models |
| 49067 | | |
| 49068 | | > show #27.1 models |
| 49069 | | |
| 49070 | | > show #7 models |
| 49071 | | |
| 49072 | | > ui tool show Matchmaker |
| 49073 | | |
| 49074 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 49075 | | QTBUG which explains how to reproduce. |
| 49076 | | |
| 49077 | | > matchmaker #7 to #27.1 |
| 49078 | | |
| 49079 | | Parameters |
| 49080 | | --- |
| 49081 | | Chain pairing | bb |
| 49082 | | Alignment algorithm | Needleman-Wunsch |
| 49083 | | Similarity matrix | BLOSUM-62 |
| 49084 | | SS fraction | 0.3 |
| 49085 | | Gap open (HH/SS/other) | 18/18/6 |
| 49086 | | Gap extend | 1 |
| 49087 | | SS matrix | | | H | S | O |
| 49088 | | ---|---|---|--- |
| 49089 | | H | 6 | -9 | -6 |
| 49090 | | S | | 6 | -6 |
| 49091 | | O | | | 4 |
| 49092 | | Iteration cutoff | 2 |
| 49093 | | |
| 49094 | | Matchmaker 3mkq_yeast_alpha_betaprimeCOPI.cif A, chain A (#27.1) with |
| 49095 | | CopBprime_O55029.pdb, chain A (#7), sequence alignment score = 2455.4 |
| 49096 | | RMSD between 517 pruned atom pairs is 0.958 angstroms; (across all 790 pairs: |
| 49097 | | 3.624) |
| 49098 | | |
| 49099 | | |
| 49100 | | > ui tool show Matchmaker |
| 49101 | | |
| 49102 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 49103 | | QTBUG which explains how to reproduce. |
| 49104 | | |
| 49105 | | > fitmap #3 inMap #34 |
| 49106 | | |
| 49107 | | Fit molecule CopA_F8WHL2.pdb (#3) to map |
| 49108 | | relion_locres_filtered_20240326_GT.mrc (#34) using 5284 atoms |
| 49109 | | average map value = 0.008583, steps = 48 |
| 49110 | | shifted from previous position = 0.14 |
| 49111 | | rotated from previous position = 0.745 degrees |
| 49112 | | atoms outside contour = 2530, contour level = 0.0073311 |
| 49113 | | |
| 49114 | | Position of CopA_F8WHL2.pdb (#3) relative to |
| 49115 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 49116 | | Matrix rotation and translation |
| 49117 | | 0.90665218 0.40362707 0.12274770 209.67691237 |
| 49118 | | -0.23919967 0.73148708 -0.63852185 283.03177820 |
| 49119 | | -0.34751306 0.54955602 0.75975182 275.81749836 |
| 49120 | | Axis 0.83062053 0.32877326 -0.44941927 |
| 49121 | | Axis point 0.00000000 -386.46550217 532.01547934 |
| 49122 | | Rotation angle (degrees) 45.65753367 |
| 49123 | | Shift along axis 143.25752972 |
| 49124 | | |
| 49125 | | |
| 49126 | | > fitmap #3 inMap #34 |
| 49127 | | |
| 49128 | | Fit molecule CopA_F8WHL2.pdb (#3) to map |
| 49129 | | relion_locres_filtered_20240326_GT.mrc (#34) using 5284 atoms |
| 49130 | | average map value = 0.008583, steps = 40 |
| 49131 | | shifted from previous position = 0.0095 |
| 49132 | | rotated from previous position = 0.0126 degrees |
| 49133 | | atoms outside contour = 2529, contour level = 0.0073311 |
| 49134 | | |
| 49135 | | Position of CopA_F8WHL2.pdb (#3) relative to |
| 49136 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 49137 | | Matrix rotation and translation |
| 49138 | | 0.90660849 0.40366478 0.12294623 209.68701855 |
| 49139 | | -0.23909291 0.73148131 -0.63856844 283.03757552 |
| 49140 | | -0.34770046 0.54953600 0.75968056 275.82022350 |
| 49141 | | Axis 0.83057060 0.32901595 -0.44933393 |
| 49142 | | Axis point 0.00000000 -386.51434698 531.90852668 |
| 49143 | | Rotation angle (degrees) 45.66236913 |
| 49144 | | Shift along axis 143.34836235 |
| 49145 | | |
| 49146 | | |
| 49147 | | > fitmap #3 inMap #34 |
| 49148 | | |
| 49149 | | Fit molecule CopA_F8WHL2.pdb (#3) to map |
| 49150 | | relion_locres_filtered_20240326_GT.mrc (#34) using 5284 atoms |
| 49151 | | average map value = 0.008583, steps = 36 |
| 49152 | | shifted from previous position = 0.00112 |
| 49153 | | rotated from previous position = 0.0134 degrees |
| 49154 | | atoms outside contour = 2529, contour level = 0.0073311 |
| 49155 | | |
| 49156 | | Position of CopA_F8WHL2.pdb (#3) relative to |
| 49157 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 49158 | | Matrix rotation and translation |
| 49159 | | 0.90666262 0.40360359 0.12274782 209.67968108 |
| 49160 | | -0.23918745 0.73150404 -0.63850700 283.03919042 |
| 49161 | | -0.34749424 0.54955069 0.75976429 275.82218780 |
| 49162 | | Axis 0.83062904 0.32876915 -0.44940655 |
| 49163 | | Axis point 0.00000000 -386.48381822 532.03434149 |
| 49164 | | Rotation angle (degrees) 45.65593678 |
| 49165 | | Shift along axis 143.26428911 |
| 49166 | | |
| 49167 | | |
| 49168 | | > fitmap #27.1 inMap #34 |
| 49169 | | |
| 49170 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 49171 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms |
| 49172 | | average map value = 0.009129, steps = 28 |
| 49173 | | shifted from previous position = 0.0459 |
| 49174 | | rotated from previous position = 0.0427 degrees |
| 49175 | | atoms outside contour = 2940, contour level = 0.0073311 |
| 49176 | | |
| 49177 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to |
| 49178 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 49179 | | Matrix rotation and translation |
| 49180 | | 0.99552363 0.00341180 0.09445138 -80.59011687 |
| 49181 | | -0.00497571 0.99985432 0.01632724 -75.52022536 |
| 49182 | | -0.09438192 -0.01672411 0.99539558 -68.54190891 |
| 49183 | | Axis -0.17224348 0.98408413 -0.04371059 |
| 49184 | | Axis point -797.71248757 0.00000000 920.18898582 |
| 49185 | | Rotation angle (degrees) 5.50563652 |
| 49186 | | Shift along axis -57.44112491 |
| 49187 | | |
| 49188 | | |
| 49189 | | > show #!34 models |
| 49190 | | |
| 49191 | | > fitmap #7 inMap #34 |
| 49192 | | |
| 49193 | | Fit molecule CopBprime_O55029.pdb (#7) to map |
| 49194 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6695 atoms |
| 49195 | | average map value = 0.009017, steps = 60 |
| 49196 | | shifted from previous position = 0.998 |
| 49197 | | rotated from previous position = 4.91 degrees |
| 49198 | | atoms outside contour = 3026, contour level = 0.0073311 |
| 49199 | | |
| 49200 | | Position of CopBprime_O55029.pdb (#7) relative to |
| 49201 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 49202 | | Matrix rotation and translation |
| 49203 | | -0.13120990 -0.23154697 -0.96393462 237.20289761 |
| 49204 | | 0.00437986 -0.97246680 0.23300031 213.62737022 |
| 49205 | | -0.99134493 0.02635005 0.12861142 275.46418453 |
| 49206 | | Axis -0.65638947 0.08706420 0.74938154 |
| 49207 | | Axis point 228.27213575 105.75135926 -0.00000000 |
| 49208 | | Rotation angle (degrees) 170.94315167 |
| 49209 | | Shift along axis 69.32958732 |
| 49210 | | |
| 49211 | | |
| 49212 | | > hide #!34 models |
| 49213 | | |
| 49214 | | > hide #27.1 models |
| 49215 | | |
| 49216 | | > show #27.1 models |
| 49217 | | |
| 49218 | | > hide #27.1 models |
| 49219 | | |
| 49220 | | > show #27.1 models |
| 49221 | | |
| 49222 | | > hide #7 models |
| 49223 | | |
| 49224 | | > hide #27.1 models |
| 49225 | | |
| 49226 | | > show #27.1 models |
| 49227 | | |
| 49228 | | > fitmap #27.1 inMap #34 |
| 49229 | | |
| 49230 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 49231 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms |
| 49232 | | average map value = 0.00913, steps = 28 |
| 49233 | | shifted from previous position = 0.0457 |
| 49234 | | rotated from previous position = 0.0619 degrees |
| 49235 | | atoms outside contour = 2939, contour level = 0.0073311 |
| 49236 | | |
| 49237 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to |
| 49238 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 49239 | | Matrix rotation and translation |
| 49240 | | 0.99560552 0.00359656 0.09357736 -80.45250014 |
| 49241 | | -0.00508864 0.99986362 0.01571114 -75.37948401 |
| 49242 | | -0.09350809 -0.01611828 0.99548804 -68.64346831 |
| 49243 | | Axis -0.16754757 0.98480336 -0.04571819 |
| 49244 | | Axis point -806.89472186 0.00000000 925.01065336 |
| 49245 | | Rotation angle (degrees) 5.45052511 |
| 49246 | | Shift along axis -57.61609285 |
| 49247 | | |
| 49248 | | |
| 49249 | | > hide #27.1 models |
| 49250 | | |
| 49251 | | > show #27.1 models |
| 49252 | | |
| 49253 | | > hide #27.1 models |
| 49254 | | |
| 49255 | | > show #32.1 models |
| 49256 | | |
| 49257 | | > show #!4 models |
| 49258 | | |
| 49259 | | > fitmap #4 inMap #34 |
| 49260 | | |
| 49261 | | Fit molecule CopB_Q9JIF7.pdb (#4) to map |
| 49262 | | relion_locres_filtered_20240326_GT.mrc (#34) using 7211 atoms |
| 49263 | | average map value = 0.009134, steps = 48 |
| 49264 | | shifted from previous position = 0.016 |
| 49265 | | rotated from previous position = 0.013 degrees |
| 49266 | | atoms outside contour = 3428, contour level = 0.0073311 |
| 49267 | | |
| 49268 | | Position of CopB_Q9JIF7.pdb (#4) relative to |
| 49269 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 49270 | | Matrix rotation and translation |
| 49271 | | -0.02190054 -0.73060769 0.68244617 220.15974033 |
| 49272 | | -0.01329605 0.68276237 0.73051952 241.08944678 |
| 49273 | | -0.99967174 0.00692493 -0.02466706 272.98068147 |
| 49274 | | Axis -0.36793573 0.85532879 0.36474096 |
| 49275 | | Axis point 254.82558488 0.00000000 -62.21074267 |
| 49276 | | Rotation angle (degrees) 100.48060128 |
| 49277 | | Shift along axis 224.77334454 |
| 49278 | | |
| 49279 | | |
| 49280 | | > fitmap #32.1 inMap #34 |
| 49281 | | |
| 49282 | | Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) to map |
| 49283 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2991 atoms |
| 49284 | | average map value = 0.01065, steps = 48 |
| 49285 | | shifted from previous position = 0.0114 |
| 49286 | | rotated from previous position = 0.0315 degrees |
| 49287 | | atoms outside contour = 1320, contour level = 0.0073311 |
| 49288 | | |
| 49289 | | Position of 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) relative to |
| 49290 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 49291 | | Matrix rotation and translation |
| 49292 | | 0.99554492 -0.07909143 0.05133089 253.49540545 |
| 49293 | | 0.06846252 0.98068108 0.18324164 192.96045198 |
| 49294 | | -0.06483207 -0.17891104 0.98172687 287.89487728 |
| 49295 | | Axis -0.88774495 0.28475028 0.36169902 |
| 49296 | | Axis point 0.00000000 1840.70608600 -961.47810858 |
| 49297 | | Rotation angle (degrees) 11.76940835 |
| 49298 | | Shift along axis -65.96242614 |
| 49299 | | |
| 49300 | | |
| 49301 | | > hide #32.1 models |
| 49302 | | |
| 49303 | | > show #32.1 models |
| 49304 | | |
| 49305 | | > hide #!4 models |
| 49306 | | |
| 49307 | | > show #!4 models |
| 49308 | | |
| 49309 | | > show #!34 models |
| 49310 | | |
| 49311 | | > hide #!34 models |
| 49312 | | |
| 49313 | | > hide #32.1 models |
| 49314 | | |
| 49315 | | > show #32.1 models |
| 49316 | | |
| 49317 | | > hide #32.1 models |
| 49318 | | |
| 49319 | | > show #32.1 models |
| 49320 | | |
| 49321 | | > hide #32.1 models |
| 49322 | | |
| 49323 | | > show #32.1 models |
| 49324 | | |
| 49325 | | > hide #32.1 models |
| 49326 | | |
| 49327 | | Drag select of 94 residues |
| 49328 | | |
| 49329 | | > select up |
| 49330 | | |
| 49331 | | 830 atoms, 842 bonds, 105 residues, 1 model selected |
| 49332 | | |
| 49333 | | > delete sel |
| 49334 | | |
| 49335 | | Drag select of 132 residues, 1 pseudobonds |
| 49336 | | |
| 49337 | | > delete sel |
| 49338 | | |
| 49339 | | > show #32.1 models |
| 49340 | | |
| 49341 | | > hide #32.1 models |
| 49342 | | |
| 49343 | | Drag select of 79 residues, 1 pseudobonds |
| 49344 | | |
| 49345 | | > select up |
| 49346 | | |
| 49347 | | 728 atoms, 735 bonds, 1 pseudobond, 93 residues, 2 models selected |
| 49348 | | |
| 49349 | | > delete sel |
| 49350 | | |
| 49351 | | > show #32.1 models |
| 49352 | | |
| 49353 | | > hide #32.1 models |
| 49354 | | |
| 49355 | | > show #32.1 models |
| 49356 | | |
| 49357 | | > hide #32.1 models |
| 49358 | | |
| 49359 | | Drag select of 12 residues, 1 pseudobonds |
| 49360 | | |
| 49361 | | > select clear |
| 49362 | | |
| 49363 | | [Repeated 1 time(s)]Drag select of 30 residues, 1 pseudobonds |
| 49364 | | |
| 49365 | | > select up |
| 49366 | | |
| 49367 | | 280 atoms, 278 bonds, 1 pseudobond, 35 residues, 2 models selected |
| 49368 | | |
| 49369 | | > delete sel |
| 49370 | | |
| 49371 | | > show #32.1 models |
| 49372 | | |
| 49373 | | > hide #32.1 models |
| 49374 | | |
| 49375 | | Drag select of 11 residues |
| 49376 | | |
| 49377 | | > delete sel |
| 49378 | | |
| 49379 | | > show #32.1 models |
| 49380 | | |
| 49381 | | > hide #32.1 models |
| 49382 | | |
| 49383 | | > show #32.1 models |
| 49384 | | |
| 49385 | | > hide #32.1 models |
| 49386 | | |
| 49387 | | > show #32.1 models |
| 49388 | | |
| 49389 | | > hide #32.1 models |
| 49390 | | |
| 49391 | | Drag select of 18 residues |
| 49392 | | |
| 49393 | | > show #32.1 models |
| 49394 | | |
| 49395 | | > hide #32.1 models |
| 49396 | | |
| 49397 | | > show #32.1 models |
| 49398 | | |
| 49399 | | > hide #32.1 models |
| 49400 | | |
| 49401 | | > delete sel |
| 49402 | | |
| 49403 | | > show #32.1 models |
| 49404 | | |
| 49405 | | > hide #!4 models |
| 49406 | | |
| 49407 | | > show #!4 models |
| 49408 | | |
| 49409 | | > show #!34 models |
| 49410 | | |
| 49411 | | > fitmap #4 inMap #34 |
| 49412 | | |
| 49413 | | Fit molecule CopB_Q9JIF7.pdb (#4) to map |
| 49414 | | relion_locres_filtered_20240326_GT.mrc (#34) using 4053 atoms |
| 49415 | | average map value = 0.00875, steps = 84 |
| 49416 | | shifted from previous position = 0.663 |
| 49417 | | rotated from previous position = 1.09 degrees |
| 49418 | | atoms outside contour = 1917, contour level = 0.0073311 |
| 49419 | | |
| 49420 | | Position of CopB_Q9JIF7.pdb (#4) relative to |
| 49421 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 49422 | | Matrix rotation and translation |
| 49423 | | -0.02330996 -0.73054950 0.68246178 220.11377170 |
| 49424 | | -0.03222225 0.68284160 0.72985551 241.56432118 |
| 49425 | | -0.99920887 -0.00497756 -0.03945696 273.35537315 |
| 49426 | | Axis -0.37423079 0.85642978 0.35563935 |
| 49427 | | Axis point 256.52305737 0.00000000 -59.47243657 |
| 49428 | | Rotation angle (degrees) 100.95060483 |
| 49429 | | Shift along axis 221.72545586 |
| 49430 | | |
| 49431 | | |
| 49432 | | > fitmap #4 inMap #34 |
| 49433 | | |
| 49434 | | Fit molecule CopB_Q9JIF7.pdb (#4) to map |
| 49435 | | relion_locres_filtered_20240326_GT.mrc (#34) using 4053 atoms |
| 49436 | | average map value = 0.00875, steps = 44 |
| 49437 | | shifted from previous position = 0.00769 |
| 49438 | | rotated from previous position = 0.0192 degrees |
| 49439 | | atoms outside contour = 1917, contour level = 0.0073311 |
| 49440 | | |
| 49441 | | Position of CopB_Q9JIF7.pdb (#4) relative to |
| 49442 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 49443 | | Matrix rotation and translation |
| 49444 | | -0.02322843 -0.73068717 0.68231716 220.11112695 |
| 49445 | | -0.03197079 0.68269515 0.73000356 241.56483053 |
| 49446 | | -0.99921885 -0.00485738 -0.03921858 273.34926672 |
| 49447 | | Axis -0.37423858 0.85634658 0.35583144 |
| 49448 | | Axis point 256.51701092 0.00000000 -59.53984280 |
| 49449 | | Rotation angle (degrees) 100.94554389 |
| 49450 | | Shift along axis 221.75540414 |
| 49451 | | |
| 49452 | | |
| 49453 | | > hide #!34 models |
| 49454 | | |
| 49455 | | > fitmap #32.1 inMap #34 |
| 49456 | | |
| 49457 | | Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) to map |
| 49458 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2991 atoms |
| 49459 | | average map value = 0.01065, steps = 44 |
| 49460 | | shifted from previous position = 0.0433 |
| 49461 | | rotated from previous position = 0.0426 degrees |
| 49462 | | atoms outside contour = 1326, contour level = 0.0073311 |
| 49463 | | |
| 49464 | | Position of 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) relative to |
| 49465 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 49466 | | Matrix rotation and translation |
| 49467 | | 0.99550918 -0.07964090 0.05117412 253.51946298 |
| 49468 | | 0.06906069 0.98072053 0.18280553 192.97867574 |
| 49469 | | -0.06474631 -0.17845047 0.98181635 287.90390194 |
| 49470 | | Axis -0.88651951 0.28446788 0.36491257 |
| 49471 | | Axis point 0.00000000 1843.87837432 -962.01397733 |
| 49472 | | Rotation angle (degrees) 11.75631197 |
| 49473 | | Shift along axis -64.79396291 |
| 49474 | | |
| 49475 | | |
| 49476 | | > show #!34 models |
| 49477 | | |
| 49478 | | > hide #32.1 models |
| 49479 | | |
| 49480 | | > show #32.1 models |
| 49481 | | |
| 49482 | | > hide #!4 models |
| 49483 | | |
| 49484 | | > show #!4 models |
| 49485 | | |
| 49486 | | > show #!9 models |
| 49487 | | |
| 49488 | | > hide #!9 models |
| 49489 | | |
| 49490 | | > show #!9 models |
| 49491 | | |
| 49492 | | > hide #!4 models |
| 49493 | | |
| 49494 | | > hide #!27 models |
| 49495 | | |
| 49496 | | > show #!26.2 models |
| 49497 | | |
| 49498 | | > hide #!34 models |
| 49499 | | |
| 49500 | | > hide #32.1 models |
| 49501 | | |
| 49502 | | > hide #!32 models |
| 49503 | | |
| 49504 | | > hide #!26.2 models |
| 49505 | | |
| 49506 | | > show #!26.2 models |
| 49507 | | |
| 49508 | | > hide #!26.2 models |
| 49509 | | |
| 49510 | | > hide #!9 models |
| 49511 | | |
| 49512 | | > show #!4 models |
| 49513 | | |
| 49514 | | > hide #!4 models |
| 49515 | | |
| 49516 | | > show #!9 models |
| 49517 | | |
| 49518 | | > show #!26.2 models |
| 49519 | | |
| 49520 | | > ui tool show Matchmaker |
| 49521 | | |
| 49522 | | > matchmaker #!9 to #26.2 |
| 49523 | | |
| 49524 | | Parameters |
| 49525 | | --- |
| 49526 | | Chain pairing | bb |
| 49527 | | Alignment algorithm | Needleman-Wunsch |
| 49528 | | Similarity matrix | BLOSUM-62 |
| 49529 | | SS fraction | 0.3 |
| 49530 | | Gap open (HH/SS/other) | 18/18/6 |
| 49531 | | Gap extend | 1 |
| 49532 | | SS matrix | | | H | S | O |
| 49533 | | ---|---|---|--- |
| 49534 | | H | 6 | -9 | -6 |
| 49535 | | S | | 6 | -6 |
| 49536 | | O | | | 4 |
| 49537 | | Iteration cutoff | 2 |
| 49538 | | |
| 49539 | | Matchmaker 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B, chain B (#26.2) with |
| 49540 | | CopG_Q9QZE5, chain A (#9), sequence alignment score = 1225.6 |
| 49541 | | RMSD between 134 pruned atom pairs is 0.962 angstroms; (across all 264 pairs: |
| 49542 | | 3.567) |
| 49543 | | |
| 49544 | | |
| 49545 | | > hide #!26.2 models |
| 49546 | | |
| 49547 | | > show #!26.2 models |
| 49548 | | |
| 49549 | | > hide #!26.2 models |
| 49550 | | |
| 49551 | | > show #!26.2 models |
| 49552 | | |
| 49553 | | > show #!34 models |
| 49554 | | |
| 49555 | | > hide #!26.2 models |
| 49556 | | |
| 49557 | | > show #!26.2 models |
| 49558 | | |
| 49559 | | > hide #!9 models |
| 49560 | | |
| 49561 | | > show #!9 models |
| 49562 | | |
| 49563 | | > hide #!34 models |
| 49564 | | |
| 49565 | | > hide #!9 models |
| 49566 | | |
| 49567 | | > show #!34 models |
| 49568 | | |
| 49569 | | > show #!9 models |
| 49570 | | |
| 49571 | | > hide #!9 models |
| 49572 | | |
| 49573 | | > hide #!26.2 models |
| 49574 | | |
| 49575 | | > show #!26.2 models |
| 49576 | | |
| 49577 | | > hide #!34 models |
| 49578 | | |
| 49579 | | > show #!9 models |
| 49580 | | |
| 49581 | | > fitmap #9 inMap #34 |
| 49582 | | |
| 49583 | | Fit molecule CopG_Q9QZE5 (#9) to map relion_locres_filtered_20240326_GT.mrc |
| 49584 | | (#34) using 4566 atoms |
| 49585 | | average map value = 0.01074, steps = 80 |
| 49586 | | shifted from previous position = 3.34 |
| 49587 | | rotated from previous position = 5.13 degrees |
| 49588 | | atoms outside contour = 2028, contour level = 0.0073311 |
| 49589 | | |
| 49590 | | Position of CopG_Q9QZE5 (#9) relative to |
| 49591 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 49592 | | Matrix rotation and translation |
| 49593 | | 0.49909802 -0.51905420 -0.69389041 274.35179074 |
| 49594 | | 0.54047840 -0.43944705 0.71747431 318.90217910 |
| 49595 | | -0.67733615 -0.73312279 0.06121043 295.12418884 |
| 49596 | | Axis -0.80749448 -0.00921515 0.58980314 |
| 49597 | | Axis point 0.00000000 283.39239014 124.73019154 |
| 49598 | | Rotation angle (degrees) 116.07640404 |
| 49599 | | Shift along axis -50.41111464 |
| 49600 | | |
| 49601 | | |
| 49602 | | > hide #!26.2 models |
| 49603 | | |
| 49604 | | Drag select of 110 residues |
| 49605 | | |
| 49606 | | > select up |
| 49607 | | |
| 49608 | | 890 atoms, 903 bonds, 113 residues, 1 model selected |
| 49609 | | |
| 49610 | | > delete sel |
| 49611 | | |
| 49612 | | Drag select of 91 residues |
| 49613 | | |
| 49614 | | > delete sel |
| 49615 | | |
| 49616 | | > show #!26.2 models |
| 49617 | | |
| 49618 | | > hide #!26.2 models |
| 49619 | | |
| 49620 | | > show #!26.2 models |
| 49621 | | |
| 49622 | | > fitmap #9 inMap #34 |
| 49623 | | |
| 49624 | | Fit molecule CopG_Q9QZE5 (#9) to map relion_locres_filtered_20240326_GT.mrc |
| 49625 | | (#34) using 2967 atoms |
| 49626 | | average map value = 0.01054, steps = 48 |
| 49627 | | shifted from previous position = 0.34 |
| 49628 | | rotated from previous position = 2.65 degrees |
| 49629 | | atoms outside contour = 1301, contour level = 0.0073311 |
| 49630 | | |
| 49631 | | Position of CopG_Q9QZE5 (#9) relative to |
| 49632 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 49633 | | Matrix rotation and translation |
| 49634 | | 0.50694806 -0.52845739 -0.68098197 274.69010864 |
| 49635 | | 0.50218549 -0.46103022 0.73161524 318.98755518 |
| 49636 | | -0.70058075 -0.71287020 0.03166526 293.78792105 |
| 49637 | | Axis -0.81398555 0.01104416 0.58078012 |
| 49638 | | Axis point 0.00000000 281.65107335 125.70418936 |
| 49639 | | Rotation angle (degrees) 117.46511421 |
| 49640 | | Shift along axis -49.44464915 |
| 49641 | | |
| 49642 | | |
| 49643 | | > fitmap #9 inMap #34 |
| 49644 | | |
| 49645 | | Fit molecule CopG_Q9QZE5 (#9) to map relion_locres_filtered_20240326_GT.mrc |
| 49646 | | (#34) using 2967 atoms |
| 49647 | | average map value = 0.01054, steps = 44 |
| 49648 | | shifted from previous position = 0.0334 |
| 49649 | | rotated from previous position = 0.0167 degrees |
| 49650 | | atoms outside contour = 1307, contour level = 0.0073311 |
| 49651 | | |
| 49652 | | Position of CopG_Q9QZE5 (#9) relative to |
| 49653 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 49654 | | Matrix rotation and translation |
| 49655 | | 0.50719854 -0.52835467 -0.68087516 274.66421831 |
| 49656 | | 0.50208682 -0.46096711 0.73172272 318.96544548 |
| 49657 | | -0.70047018 -0.71298713 0.03147807 293.79283152 |
| 49658 | | Axis -0.81408188 0.01104163 0.58064513 |
| 49659 | | Axis point 0.00000000 281.64332366 125.67569448 |
| 49660 | | Rotation angle (degrees) 117.46103343 |
| 49661 | | Shift along axis -49.48788799 |
| 49662 | | |
| 49663 | | |
| 49664 | | > hide #!26.2 models |
| 49665 | | |
| 49666 | | Drag select of 47 residues |
| 49667 | | |
| 49668 | | > delete sel |
| 49669 | | |
| 49670 | | Drag select of 2 pseudobonds |
| 49671 | | |
| 49672 | | > delete sel |
| 49673 | | |
| 49674 | | Drag select of 5 residues, 4 pseudobonds |
| 49675 | | |
| 49676 | | > select clear |
| 49677 | | |
| 49678 | | Drag select of 3 residues, 3 pseudobonds |
| 49679 | | |
| 49680 | | > delete sel |
| 49681 | | |
| 49682 | | Drag select of 1 residues, 1 pseudobonds |
| 49683 | | |
| 49684 | | > delete sel |
| 49685 | | |
| 49686 | | > show #!26.2 models |
| 49687 | | |
| 49688 | | > fitmap #9 inMap #34 |
| 49689 | | |
| 49690 | | Fit molecule CopG_Q9QZE5 (#9) to map relion_locres_filtered_20240326_GT.mrc |
| 49691 | | (#34) using 2556 atoms |
| 49692 | | average map value = 0.01067, steps = 44 |
| 49693 | | shifted from previous position = 0.132 |
| 49694 | | rotated from previous position = 1.24 degrees |
| 49695 | | atoms outside contour = 1127, contour level = 0.0073311 |
| 49696 | | |
| 49697 | | Position of CopG_Q9QZE5 (#9) relative to |
| 49698 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 49699 | | Matrix rotation and translation |
| 49700 | | 0.50346645 -0.54606842 -0.66957510 275.34669305 |
| 49701 | | 0.49757014 -0.45030989 0.74138044 318.56014835 |
| 49702 | | -0.70636074 -0.70642075 0.04499141 293.43524311 |
| 49703 | | Axis -0.81103737 0.02060678 0.58463129 |
| 49704 | | Axis point 0.00000000 284.08429210 124.79243856 |
| 49705 | | Rotation angle (degrees) 116.80311155 |
| 49706 | | Shift along axis -45.20053501 |
| 49707 | | |
| 49708 | | |
| 49709 | | > fitmap #9 inMap #34 |
| 49710 | | |
| 49711 | | Fit molecule CopG_Q9QZE5 (#9) to map relion_locres_filtered_20240326_GT.mrc |
| 49712 | | (#34) using 2556 atoms |
| 49713 | | average map value = 0.01067, steps = 44 |
| 49714 | | shifted from previous position = 0.0204 |
| 49715 | | rotated from previous position = 0.0722 degrees |
| 49716 | | atoms outside contour = 1122, contour level = 0.0073311 |
| 49717 | | |
| 49718 | | Position of CopG_Q9QZE5 (#9) relative to |
| 49719 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 49720 | | Matrix rotation and translation |
| 49721 | | 0.50388998 -0.54672525 -0.66871996 275.37547012 |
| 49722 | | 0.49734592 -0.44933645 0.74212114 318.52128539 |
| 49723 | | -0.70621662 -0.70653255 0.04549543 293.46301271 |
| 49724 | | Axis -0.81107915 0.02099381 0.58455956 |
| 49725 | | Axis point 0.00000000 284.26016119 124.66985760 |
| 49726 | | Rotation angle (degrees) 116.74211330 |
| 49727 | | Shift along axis -45.11771772 |
| 49728 | | |
| 49729 | | |
| 49730 | | > hide #!26.2 models |
| 49731 | | |
| 49732 | | > show #!26.2 models |
| 49733 | | |
| 49734 | | > hide #!26.2 models |
| 49735 | | |
| 49736 | | > show #!26.2 models |
| 49737 | | |
| 49738 | | > hide #!26.2 models |
| 49739 | | |
| 49740 | | > show #!26.2 models |
| 49741 | | |
| 49742 | | > hide #!26.2 models |
| 49743 | | |
| 49744 | | Drag select of 14 residues, 3 pseudobonds |
| 49745 | | |
| 49746 | | > select up |
| 49747 | | |
| 49748 | | 150 atoms, 148 bonds, 3 pseudobonds, 19 residues, 2 models selected |
| 49749 | | |
| 49750 | | > select down |
| 49751 | | |
| 49752 | | 111 atoms, 3 pseudobonds, 14 residues, 2 models selected |
| 49753 | | |
| 49754 | | > select up |
| 49755 | | |
| 49756 | | 150 atoms, 148 bonds, 3 pseudobonds, 19 residues, 2 models selected |
| 49757 | | |
| 49758 | | > delete sel |
| 49759 | | |
| 49760 | | Drag select of 1 residues, 2 pseudobonds |
| 49761 | | |
| 49762 | | > delete sel |
| 49763 | | |
| 49764 | | Drag select of 1 pseudobonds |
| 49765 | | Drag select of 1 residues, 2 pseudobonds |
| 49766 | | |
| 49767 | | > select clear |
| 49768 | | |
| 49769 | | Drag select of 2 residues, 2 pseudobonds |
| 49770 | | |
| 49771 | | > delete sel |
| 49772 | | |
| 49773 | | Drag select of 2 pseudobonds |
| 49774 | | |
| 49775 | | > delete sel |
| 49776 | | |
| 49777 | | Drag select of 1 pseudobonds |
| 49778 | | [Repeated 1 time(s)] |
| 49779 | | |
| 49780 | | > select up |
| 49781 | | |
| 49782 | | 3 pseudobonds, 1 model selected |
| 49783 | | |
| 49784 | | > select down |
| 49785 | | |
| 49786 | | 1 pseudobond, 1 model selected |
| 49787 | | |
| 49788 | | > select down |
| 49789 | | |
| 49790 | | 1 pseudobond, 1 model selected |
| 49791 | | |
| 49792 | | > select up |
| 49793 | | |
| 49794 | | 3 pseudobonds, 1 model selected |
| 49795 | | |
| 49796 | | > select down |
| 49797 | | |
| 49798 | | 1 pseudobond, 1 model selected |
| 49799 | | |
| 49800 | | > select up |
| 49801 | | |
| 49802 | | 3 pseudobonds, 1 model selected |
| 49803 | | |
| 49804 | | > select down |
| 49805 | | |
| 49806 | | 1 pseudobond, 1 model selected |
| 49807 | | |
| 49808 | | > select up |
| 49809 | | |
| 49810 | | 3 pseudobonds, 1 model selected |
| 49811 | | |
| 49812 | | > delete sel |
| 49813 | | |
| 49814 | | > show #!26.2 models |
| 49815 | | |
| 49816 | | > fitmap #9 inMap #34 |
| 49817 | | |
| 49818 | | Fit molecule CopG_Q9QZE5 (#9) to map relion_locres_filtered_20240326_GT.mrc |
| 49819 | | (#34) using 2387 atoms |
| 49820 | | average map value = 0.01097, steps = 48 |
| 49821 | | shifted from previous position = 0.248 |
| 49822 | | rotated from previous position = 1.1 degrees |
| 49823 | | atoms outside contour = 1022, contour level = 0.0073311 |
| 49824 | | |
| 49825 | | Position of CopG_Q9QZE5 (#9) relative to |
| 49826 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 49827 | | Matrix rotation and translation |
| 49828 | | 0.49155273 -0.56119812 -0.66590733 275.57602159 |
| 49829 | | 0.49529023 -0.44878681 0.74382658 318.38781306 |
| 49830 | | -0.71628451 -0.69544739 0.05735357 292.72367981 |
| 49831 | | Axis -0.80581155 0.02820485 0.59149998 |
| 49832 | | Axis point 0.00000000 284.91739309 125.39260440 |
| 49833 | | Rotation angle (degrees) 116.73985088 |
| 49834 | | Shift along axis -39.93621102 |
| 49835 | | |
| 49836 | | |
| 49837 | | > hide #!26.2 models |
| 49838 | | |
| 49839 | | Drag select of 10 residues, 1 pseudobonds |
| 49840 | | |
| 49841 | | > delete sel |
| 49842 | | |
| 49843 | | > fitmap #9 inMap #34 |
| 49844 | | |
| 49845 | | Fit molecule CopG_Q9QZE5 (#9) to map relion_locres_filtered_20240326_GT.mrc |
| 49846 | | (#34) using 2320 atoms |
| 49847 | | average map value = 0.01101, steps = 44 |
| 49848 | | shifted from previous position = 0.0826 |
| 49849 | | rotated from previous position = 0.368 degrees |
| 49850 | | atoms outside contour = 997, contour level = 0.0073311 |
| 49851 | | |
| 49852 | | Position of CopG_Q9QZE5 (#9) relative to |
| 49853 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 49854 | | Matrix rotation and translation |
| 49855 | | 0.49545404 -0.56085852 -0.66329708 275.65475289 |
| 49856 | | 0.49656935 -0.44365201 0.74605078 318.22072220 |
| 49857 | | -0.71270202 -0.69900687 0.05869596 293.01955930 |
| 49858 | | Axis -0.80670507 0.02758037 0.59031030 |
| 49859 | | Axis point 0.00000000 285.62651096 124.66198228 |
| 49860 | | Rotation angle (degrees) 116.40740917 |
| 49861 | | Shift along axis -40.62297843 |
| 49862 | | |
| 49863 | | |
| 49864 | | > show #!26.2 models |
| 49865 | | |
| 49866 | | > hide #!26.2 models |
| 49867 | | |
| 49868 | | Drag select of 17 residues, 2 pseudobonds |
| 49869 | | |
| 49870 | | > delete sel |
| 49871 | | |
| 49872 | | > show #!26.2 models |
| 49873 | | |
| 49874 | | > fitmap #9 inMap #34 |
| 49875 | | |
| 49876 | | Fit molecule CopG_Q9QZE5 (#9) to map relion_locres_filtered_20240326_GT.mrc |
| 49877 | | (#34) using 2198 atoms |
| 49878 | | average map value = 0.01107, steps = 64 |
| 49879 | | shifted from previous position = 0.0821 |
| 49880 | | rotated from previous position = 0.57 degrees |
| 49881 | | atoms outside contour = 938, contour level = 0.0073311 |
| 49882 | | |
| 49883 | | Position of CopG_Q9QZE5 (#9) relative to |
| 49884 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 49885 | | Matrix rotation and translation |
| 49886 | | 0.48746773 -0.56652448 -0.66439840 275.59439501 |
| 49887 | | 0.49867194 -0.44398039 0.74445128 318.28970725 |
| 49888 | | -0.71672973 -0.69421281 0.06608375 292.75462419 |
| 49889 | | Axis -0.80334240 0.02922154 0.59480004 |
| 49890 | | Axis point 0.00000000 285.75896486 125.23483142 |
| 49891 | | Rotation angle (degrees) 116.43706053 |
| 49892 | | Shift along axis -37.96528696 |
| 49893 | | |
| 49894 | | |
| 49895 | | > hide #!26.2 models |
| 49896 | | |
| 49897 | | Drag select of 3 residues, 1 pseudobonds |
| 49898 | | |
| 49899 | | > delete sel |
| 49900 | | |
| 49901 | | Drag select of 3 pseudobonds |
| 49902 | | |
| 49903 | | > delete sel |
| 49904 | | |
| 49905 | | [Repeated 2 time(s)] |
| 49906 | | |
| 49907 | | > hide #!9 models |
| 49908 | | |
| 49909 | | > show #!9 models |
| 49910 | | |
| 49911 | | Drag select of 1 pseudobonds |
| 49912 | | |
| 49913 | | > delete sel |
| 49914 | | |
| 49915 | | [Repeated 1 time(s)] |
| 49916 | | |
| 49917 | | > select clear |
| 49918 | | |
| 49919 | | Drag select of 3 pseudobonds |
| 49920 | | |
| 49921 | | > delete sel |
| 49922 | | |
| 49923 | | > ui mousemode right "map eraser" |
| 49924 | | |
| 49925 | | > ui mousemode right select |
| 49926 | | |
| 49927 | | Drag select of 1 pseudobonds |
| 49928 | | |
| 49929 | | > select add #9 |
| 49930 | | |
| 49931 | | 2173 atoms, 2202 bonds, 4 pseudobonds, 277 residues, 2 models selected |
| 49932 | | |
| 49933 | | > select subtract #9 |
| 49934 | | |
| 49935 | | Nothing selected |
| 49936 | | |
| 49937 | | > select clear |
| 49938 | | |
| 49939 | | Drag select of 1 pseudobonds |
| 49940 | | |
| 49941 | | > delete sel |
| 49942 | | |
| 49943 | | > fitmap #9 inMap #34 |
| 49944 | | |
| 49945 | | Fit molecule CopG_Q9QZE5 (#9) to map relion_locres_filtered_20240326_GT.mrc |
| 49946 | | (#34) using 2173 atoms |
| 49947 | | average map value = 0.01105, steps = 36 |
| 49948 | | shifted from previous position = 0.0381 |
| 49949 | | rotated from previous position = 0.188 degrees |
| 49950 | | atoms outside contour = 934, contour level = 0.0073311 |
| 49951 | | |
| 49952 | | Position of CopG_Q9QZE5 (#9) relative to |
| 49953 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 49954 | | Matrix rotation and translation |
| 49955 | | 0.48672193 -0.56899802 -0.66282955 275.67132143 |
| 49956 | | 0.49682989 -0.44379152 0.74579430 318.21999902 |
| 49957 | | -0.71851362 -0.69230797 0.06669216 292.62144714 |
| 49958 | | Axis -0.80301721 0.03109325 0.59514416 |
| 49959 | | Axis point 0.00000000 285.90801042 125.25047280 |
| 49960 | | Rotation angle (degrees) 116.43541348 |
| 49961 | | Shift along axis -37.32237979 |
| 49962 | | |
| 49963 | | |
| 49964 | | > show #!26.2 models |
| 49965 | | |
| 49966 | | > show #!34 models |
| 49967 | | |
| 49968 | | > select add #9 |
| 49969 | | |
| 49970 | | 2173 atoms, 2202 bonds, 4 pseudobonds, 277 residues, 2 models selected |
| 49971 | | |
| 49972 | | > select subtract #9 |
| 49973 | | |
| 49974 | | Nothing selected |
| 49975 | | |
| 49976 | | > hide #!9 models |
| 49977 | | |
| 49978 | | > hide #!34 models |
| 49979 | | |
| 49980 | | > hide #!26.2 models |
| 49981 | | |
| 49982 | | > show #!9 models |
| 49983 | | |
| 49984 | | > hide #!9 models |
| 49985 | | |
| 49986 | | > show #8 models |
| 49987 | | |
| 49988 | | > hide #!26 models |
| 49989 | | |
| 49990 | | > show #32.2 models |
| 49991 | | |
| 49992 | | > fitmap #8 inMap #34 |
| 49993 | | |
| 49994 | | Fit molecule CopD_Q5XJY5 (#8) to map relion_locres_filtered_20240326_GT.mrc |
| 49995 | | (#34) using 1462 atoms |
| 49996 | | average map value = 0.00841, steps = 40 |
| 49997 | | shifted from previous position = 0.0348 |
| 49998 | | rotated from previous position = 0.104 degrees |
| 49999 | | atoms outside contour = 714, contour level = 0.0073311 |
| 50000 | | |
| 50001 | | Position of CopD_Q5XJY5 (#8) relative to |
| 50002 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 50003 | | Matrix rotation and translation |
| 50004 | | 0.07010812 0.98860161 0.13323554 -99.31408813 |
| 50005 | | -0.91255617 0.00961540 0.40883835 163.15937558 |
| 50006 | | 0.40289713 -0.15024780 0.90282861 445.76147651 |
| 50007 | | Axis -0.27955371 -0.13483593 -0.95061506 |
| 50008 | | Axis point -59.51477087 162.67491243 0.00000000 |
| 50009 | | Rotation angle (degrees) 90.49985085 |
| 50010 | | Shift along axis -417.98369690 |
| 50011 | | |
| 50012 | | |
| 50013 | | > fitmap #32.2 inMap #34 |
| 50014 | | |
| 50015 | | Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif B (#32.2) to map |
| 50016 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1222 atoms |
| 50017 | | average map value = 0.009669, steps = 44 |
| 50018 | | shifted from previous position = 0.0317 |
| 50019 | | rotated from previous position = 0.0449 degrees |
| 50020 | | atoms outside contour = 491, contour level = 0.0073311 |
| 50021 | | |
| 50022 | | Position of 5mu7_Thermophila_beta_deltaCOPI.cif B (#32.2) relative to |
| 50023 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 50024 | | Matrix rotation and translation |
| 50025 | | 0.97963550 0.04166777 0.19641305 249.13094960 |
| 50026 | | -0.05652550 0.99589796 0.07065489 194.54481704 |
| 50027 | | -0.19266333 -0.08031839 0.97797229 284.12672109 |
| 50028 | | Axis -0.35213506 0.90749463 -0.22902925 |
| 50029 | | Axis point 1633.48529893 0.00000000 -1141.61503211 |
| 50030 | | Rotation angle (degrees) 12.37847660 |
| 50031 | | Shift along axis 23.74730487 |
| 50032 | | |
| 50033 | | |
| 50034 | | > hide #8 models |
| 50035 | | |
| 50036 | | > show #8 models |
| 50037 | | |
| 50038 | | > show #!34 models |
| 50039 | | |
| 50040 | | > hide #32.2 models |
| 50041 | | |
| 50042 | | > show #32.1 models |
| 50043 | | |
| 50044 | | > hide #8 models |
| 50045 | | |
| 50046 | | > show #!4 models |
| 50047 | | |
| 50048 | | > hide #!34 models |
| 50049 | | |
| 50050 | | > hide #32.1 models |
| 50051 | | |
| 50052 | | > show #32.1 models |
| 50053 | | |
| 50054 | | > hide #!32 models |
| 50055 | | |
| 50056 | | > hide #32.1 models |
| 50057 | | |
| 50058 | | > show #28 models |
| 50059 | | |
| 50060 | | > hide #!4 models |
| 50061 | | |
| 50062 | | > show #10 models |
| 50063 | | |
| 50064 | | > hide #10 models |
| 50065 | | |
| 50066 | | > show #12 models |
| 50067 | | |
| 50068 | | > hide #28 models |
| 50069 | | |
| 50070 | | > show #28 models |
| 50071 | | |
| 50072 | | > show #!34 models |
| 50073 | | |
| 50074 | | > hide #12 models |
| 50075 | | |
| 50076 | | > show #10 models |
| 50077 | | |
| 50078 | | > hide #10 models |
| 50079 | | |
| 50080 | | > show #12 models |
| 50081 | | |
| 50082 | | > hide #12 models |
| 50083 | | |
| 50084 | | > show #12 models |
| 50085 | | |
| 50086 | | > hide #12 models |
| 50087 | | |
| 50088 | | > show #12 models |
| 50089 | | |
| 50090 | | > hide #12 models |
| 50091 | | |
| 50092 | | > show #!26.1 models |
| 50093 | | |
| 50094 | | > hide #28 models |
| 50095 | | |
| 50096 | | > hide #!26.1 models |
| 50097 | | |
| 50098 | | > show #!35 models |
| 50099 | | |
| 50100 | | > hide #!35 models |
| 50101 | | |
| 50102 | | > show #!36 models |
| 50103 | | |
| 50104 | | > show #!37 models |
| 50105 | | |
| 50106 | | > hide #!36 models |
| 50107 | | |
| 50108 | | > show #5 models |
| 50109 | | |
| 50110 | | > hide #5 models |
| 50111 | | |
| 50112 | | > show #6 models |
| 50113 | | |
| 50114 | | > hide #!34 models |
| 50115 | | |
| 50116 | | > hide #6 models |
| 50117 | | |
| 50118 | | > show #!3 models |
| 50119 | | |
| 50120 | | > hide #!3 models |
| 50121 | | |
| 50122 | | > show #!1 models |
| 50123 | | |
| 50124 | | > hide #!1 models |
| 50125 | | |
| 50126 | | > show #!34 models |
| 50127 | | |
| 50128 | | > hide #!37 models |
| 50129 | | |
| 50130 | | > hide #!26 models |
| 50131 | | |
| 50132 | | > view orient |
| 50133 | | |
| 50134 | | > show #!1 models |
| 50135 | | |
| 50136 | | > hide #!1 models |
| 50137 | | |
| 50138 | | > show #!1 models |
| 50139 | | |
| 50140 | | > show #!3 models |
| 50141 | | |
| 50142 | | > hide #!3 models |
| 50143 | | |
| 50144 | | > show #!3 models |
| 50145 | | |
| 50146 | | > hide #!3 models |
| 50147 | | |
| 50148 | | > show #!3 models |
| 50149 | | |
| 50150 | | > hide #!34 models |
| 50151 | | |
| 50152 | | > show #!30 models |
| 50153 | | |
| 50154 | | > show #27.2 models |
| 50155 | | |
| 50156 | | > hide #!3 models |
| 50157 | | |
| 50158 | | > show #!3 models |
| 50159 | | |
| 50160 | | > hide #!3 models |
| 50161 | | |
| 50162 | | > hide #!1 models |
| 50163 | | |
| 50164 | | > show #!1 models |
| 50165 | | |
| 50166 | | > hide #!1 models |
| 50167 | | |
| 50168 | | > show #!3 models |
| 50169 | | |
| 50170 | | > hide #!3 models |
| 50171 | | |
| 50172 | | > close #3 |
| 50173 | | |
| 50174 | | > show #!1 models |
| 50175 | | |
| 50176 | | > show #!34 models |
| 50177 | | |
| 50178 | | > show #!4 models |
| 50179 | | |
| 50180 | | > show #8 models |
| 50181 | | |
| 50182 | | > show #!9 models |
| 50183 | | |
| 50184 | | > show #!24 models |
| 50185 | | |
| 50186 | | > show #!26.1 models |
| 50187 | | |
| 50188 | | > show #!26.2 models |
| 50189 | | |
| 50190 | | > show #26.3 models |
| 50191 | | |
| 50192 | | > show #28 models |
| 50193 | | |
| 50194 | | > show #!29 models |
| 50195 | | |
| 50196 | | > show #32.1 models |
| 50197 | | |
| 50198 | | > show #32.2 models |
| 50199 | | |
| 50200 | | > show #!35 models |
| 50201 | | |
| 50202 | | > show #!36 models |
| 50203 | | |
| 50204 | | > show #!37 models |
| 50205 | | |
| 50206 | | > show #38 models |
| 50207 | | |
| 50208 | | > hide #38 models |
| 50209 | | |
| 50210 | | > show #39 models |
| 50211 | | |
| 50212 | | > hide #39 models |
| 50213 | | |
| 50214 | | > show #!40 models |
| 50215 | | |
| 50216 | | > close #39 |
| 50217 | | |
| 50218 | | > close #38 |
| 50219 | | |
| 50220 | | > show #27.1 models |
| 50221 | | |
| 50222 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 50223 | | > dataset/Chimera sessions/20240708_leaf_fitting_v35_labelled.cxs" |
| 50224 | | |
| 50225 | | > hide #!4 models |
| 50226 | | |
| 50227 | | > show #!4 models |
| 50228 | | |
| 50229 | | > hide #!34 models |
| 50230 | | |
| 50231 | | > show #!34 models |
| 50232 | | |
| 50233 | | > hide #!26 models |
| 50234 | | |
| 50235 | | > hide #!27 models |
| 50236 | | |
| 50237 | | > hide #!34 models |
| 50238 | | |
| 50239 | | > hide #!35 models |
| 50240 | | |
| 50241 | | > hide #!36 models |
| 50242 | | |
| 50243 | | > hide #!37 models |
| 50244 | | |
| 50245 | | > hide #!40 models |
| 50246 | | |
| 50247 | | > hide #32.2 models |
| 50248 | | |
| 50249 | | > hide #!30 models |
| 50250 | | |
| 50251 | | > hide #!29 models |
| 50252 | | |
| 50253 | | > hide #28 models |
| 50254 | | |
| 50255 | | > show #28 models |
| 50256 | | |
| 50257 | | > hide #28 models |
| 50258 | | |
| 50259 | | > hide #!24 models |
| 50260 | | |
| 50261 | | > hide #!9 models |
| 50262 | | |
| 50263 | | > hide #8 models |
| 50264 | | |
| 50265 | | > hide #!4 models |
| 50266 | | |
| 50267 | | > show #!4 models |
| 50268 | | |
| 50269 | | > hide #!1 models |
| 50270 | | |
| 50271 | | > show #!34 models |
| 50272 | | |
| 50273 | | > volume #34 level 0.00463 |
| 50274 | | |
| 50275 | | > show #!26 models |
| 50276 | | |
| 50277 | | > show #!27 models |
| 50278 | | |
| 50279 | | > show #!30 models |
| 50280 | | |
| 50281 | | > show #28 models |
| 50282 | | |
| 50283 | | > show #!29 models |
| 50284 | | |
| 50285 | | > show #!1 models |
| 50286 | | |
| 50287 | | > show #8 models |
| 50288 | | |
| 50289 | | > show #!9 models |
| 50290 | | |
| 50291 | | > show #!35 models |
| 50292 | | |
| 50293 | | > show #!36 models |
| 50294 | | |
| 50295 | | > show #!37 models |
| 50296 | | |
| 50297 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 50298 | | > dataset/Chimera sessions/20240708_leaf_fitting_v36_labelled.cxs" |
| 50299 | | |
| 50300 | | ——— End of log from Mon Jul 8 16:31:05 2024 ——— |
| 50301 | | |
| 50302 | | opened ChimeraX session |
| 50303 | | |
| 50304 | | > hide #!1 models |
| 50305 | | |
| 50306 | | > show #!1 models |
| 50307 | | |
| 50308 | | > hide #!4 models |
| 50309 | | |
| 50310 | | > hide #8 models |
| 50311 | | |
| 50312 | | > hide #!9 models |
| 50313 | | |
| 50314 | | > hide #!26 models |
| 50315 | | |
| 50316 | | > hide #!27 models |
| 50317 | | |
| 50318 | | > show #!27 models |
| 50319 | | |
| 50320 | | > hide #27.2 models |
| 50321 | | |
| 50322 | | > hide #28 models |
| 50323 | | |
| 50324 | | > hide #!29 models |
| 50325 | | |
| 50326 | | > hide #!32 models |
| 50327 | | |
| 50328 | | > hide #32.1 models |
| 50329 | | |
| 50330 | | > hide #!35 models |
| 50331 | | |
| 50332 | | > hide #!36 models |
| 50333 | | |
| 50334 | | > hide #!37 models |
| 50335 | | |
| 50336 | | > hide #27.1 models |
| 50337 | | |
| 50338 | | > show #27.2 models |
| 50339 | | |
| 50340 | | > hide #!34 models |
| 50341 | | |
| 50342 | | > hide #27.2 models |
| 50343 | | |
| 50344 | | > hide #!1 models |
| 50345 | | |
| 50346 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 50347 | | QTBUG which explains how to reproduce. |
| 50348 | | |
| 50349 | | > show #!1 models |
| 50350 | | |
| 50351 | | > hide #!30 models |
| 50352 | | |
| 50353 | | > ui mousemode right select |
| 50354 | | |
| 50355 | | Drag select of 6 residues |
| 50356 | | |
| 50357 | | > delete sel |
| 50358 | | |
| 50359 | | > show #!30 models |
| 50360 | | |
| 50361 | | > hide #!30 models |
| 50362 | | |
| 50363 | | Drag select of 1 residues |
| 50364 | | |
| 50365 | | > delete sel |
| 50366 | | |
| 50367 | | > ui tool show "Fit in Map" |
| 50368 | | |
| 50369 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 50370 | | QTBUG which explains how to reproduce. |
| 50371 | | |
| 50372 | | [Repeated 1 time(s)] |
| 50373 | | |
| 50374 | | > fitmap #1 inMap #34 |
| 50375 | | |
| 50376 | | Fit molecule CopA-F8WHL2.pdb (#1) to map |
| 50377 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2771 atoms |
| 50378 | | average map value = 0.008155, steps = 80 |
| 50379 | | shifted from previous position = 0.211 |
| 50380 | | rotated from previous position = 0.555 degrees |
| 50381 | | atoms outside contour = 871, contour level = 0.0046305 |
| 50382 | | |
| 50383 | | Position of CopA-F8WHL2.pdb (#1) relative to |
| 50384 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 50385 | | Matrix rotation and translation |
| 50386 | | 0.76345177 0.57888387 0.28641728 208.93049254 |
| 50387 | | -0.11441205 0.55766611 -0.82214256 282.30992585 |
| 50388 | | -0.63565027 0.59489661 0.49198248 267.72071042 |
| 50389 | | Axis 0.77550079 0.50461845 -0.37941896 |
| 50390 | | Axis point 0.00000000 -268.97623519 363.55859518 |
| 50391 | | Rotation angle (degrees) 66.01169394 |
| 50392 | | Shift along axis 202.90624492 |
| 50393 | | |
| 50394 | | |
| 50395 | | > show #!30 models |
| 50396 | | |
| 50397 | | > show #27.2 models |
| 50398 | | |
| 50399 | | > hide #!30 models |
| 50400 | | |
| 50401 | | > hide #!1 models |
| 50402 | | |
| 50403 | | > show #!1 models |
| 50404 | | |
| 50405 | | > show #!30 models |
| 50406 | | |
| 50407 | | > hide #27.2 models |
| 50408 | | |
| 50409 | | > fitmap #1 inMap #34 |
| 50410 | | |
| 50411 | | Fit molecule CopA-F8WHL2.pdb (#1) to map |
| 50412 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2771 atoms |
| 50413 | | average map value = 0.008156, steps = 80 |
| 50414 | | shifted from previous position = 0.0143 |
| 50415 | | rotated from previous position = 0.0356 degrees |
| 50416 | | atoms outside contour = 871, contour level = 0.0046305 |
| 50417 | | |
| 50418 | | Position of CopA-F8WHL2.pdb (#1) relative to |
| 50419 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 50420 | | Matrix rotation and translation |
| 50421 | | 0.76333102 0.57877816 0.28695227 208.94720365 |
| 50422 | | -0.11421575 0.55810949 -0.82186894 282.31642752 |
| 50423 | | -0.63583058 0.59458358 0.49212787 267.71075564 |
| 50424 | | Axis 0.77526812 0.50506749 -0.37929693 |
| 50425 | | Axis point 0.00000000 -269.27280295 363.51062044 |
| 50426 | | Rotation angle (degrees) 65.99701789 |
| 50427 | | Shift along axis 203.03709012 |
| 50428 | | |
| 50429 | | |
| 50430 | | > fitmap #1 inMap #34 |
| 50431 | | |
| 50432 | | Fit molecule CopA-F8WHL2.pdb (#1) to map |
| 50433 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2771 atoms |
| 50434 | | average map value = 0.008155, steps = 84 |
| 50435 | | shifted from previous position = 0.0375 |
| 50436 | | rotated from previous position = 0.0476 degrees |
| 50437 | | atoms outside contour = 872, contour level = 0.0046305 |
| 50438 | | |
| 50439 | | Position of CopA-F8WHL2.pdb (#1) relative to |
| 50440 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 50441 | | Matrix rotation and translation |
| 50442 | | 0.76340944 0.57903839 0.28621771 208.94170314 |
| 50443 | | -0.11495598 0.55784514 -0.82194521 282.33128471 |
| 50444 | | -0.63560298 0.59457829 0.49242817 267.74785764 |
| 50445 | | Axis 0.77532859 0.50455494 -0.37985509 |
| 50446 | | Axis point 0.00000000 -269.22508204 363.86197383 |
| 50447 | | Rotation angle (degrees) 65.99343122 |
| 50448 | | Shift along axis 202.74473322 |
| 50449 | | |
| 50450 | | |
| 50451 | | > fitmap #1 inMap #34 |
| 50452 | | |
| 50453 | | Fit molecule CopA-F8WHL2.pdb (#1) to map |
| 50454 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2771 atoms |
| 50455 | | average map value = 0.008156, steps = 76 |
| 50456 | | shifted from previous position = 0.00939 |
| 50457 | | rotated from previous position = 0.0197 degrees |
| 50458 | | atoms outside contour = 874, contour level = 0.0046305 |
| 50459 | | |
| 50460 | | Position of CopA-F8WHL2.pdb (#1) relative to |
| 50461 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 50462 | | Matrix rotation and translation |
| 50463 | | 0.76335812 0.57894538 0.28654253 208.94383715 |
| 50464 | | -0.11474512 0.55805259 -0.82183384 282.33157319 |
| 50465 | | -0.63570271 0.59447418 0.49242513 267.73980999 |
| 50466 | | Axis 0.77523958 0.50480616 -0.37970295 |
| 50467 | | Axis point 0.00000000 -269.33631433 363.78136540 |
| 50468 | | Rotation angle (degrees) 65.98863033 |
| 50469 | | Shift along axis 202.84265534 |
| 50470 | | |
| 50471 | | |
| 50472 | | > fitmap #1 inMap #34 |
| 50473 | | |
| 50474 | | Fit molecule CopA-F8WHL2.pdb (#1) to map |
| 50475 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2771 atoms |
| 50476 | | average map value = 0.008155, steps = 64 |
| 50477 | | shifted from previous position = 0.0263 |
| 50478 | | rotated from previous position = 0.0287 degrees |
| 50479 | | atoms outside contour = 869, contour level = 0.0046305 |
| 50480 | | |
| 50481 | | Position of CopA-F8WHL2.pdb (#1) relative to |
| 50482 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 50483 | | Matrix rotation and translation |
| 50484 | | 0.76334765 0.57904701 0.28636504 208.93346258 |
| 50485 | | -0.11461033 0.55766302 -0.82211704 282.30534689 |
| 50486 | | -0.63573960 0.59474072 0.49205552 267.74112927 |
| 50487 | | Axis 0.77539505 0.50463455 -0.37961360 |
| 50488 | | Axis point 0.00000000 -269.06088199 363.65441165 |
| 50489 | | Rotation angle (degrees) 66.01276541 |
| 50490 | | Shift along axis 202.82883214 |
| 50491 | | |
| 50492 | | |
| 50493 | | > fitmap #1 inMap #34 |
| 50494 | | |
| 50495 | | Fit molecule CopA-F8WHL2.pdb (#1) to map |
| 50496 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2771 atoms |
| 50497 | | average map value = 0.008155, steps = 84 |
| 50498 | | shifted from previous position = 0.0277 |
| 50499 | | rotated from previous position = 0.0388 degrees |
| 50500 | | atoms outside contour = 872, contour level = 0.0046305 |
| 50501 | | |
| 50502 | | Position of CopA-F8WHL2.pdb (#1) relative to |
| 50503 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 50504 | | Matrix rotation and translation |
| 50505 | | 0.76328504 0.57889200 0.28684489 208.95713954 |
| 50506 | | -0.11453396 0.55820402 -0.82176045 282.33242854 |
| 50507 | | -0.63582853 0.59438398 0.49237157 267.73728030 |
| 50508 | | Axis 0.77515473 0.50504358 -0.37956044 |
| 50509 | | Axis point -0.00000000 -269.42840638 363.69522541 |
| 50510 | | Rotation angle (degrees) 65.98785262 |
| 50511 | | Shift along axis 202.94181503 |
| 50512 | | |
| 50513 | | |
| 50514 | | > show #27.2 models |
| 50515 | | |
| 50516 | | > hide #!1 models |
| 50517 | | |
| 50518 | | > show #!1 models |
| 50519 | | |
| 50520 | | > hide #27.2 models |
| 50521 | | |
| 50522 | | > show #27.2 models |
| 50523 | | |
| 50524 | | > show #!34 models |
| 50525 | | |
| 50526 | | > hide #!34 models |
| 50527 | | |
| 50528 | | > show #!34 models |
| 50529 | | |
| 50530 | | > hide #!30 models |
| 50531 | | |
| 50532 | | > hide #!34 models |
| 50533 | | |
| 50534 | | > hide #27.2 models |
| 50535 | | |
| 50536 | | > ui mousemode right select |
| 50537 | | |
| 50538 | | Drag select of 14 residues |
| 50539 | | |
| 50540 | | > delete sel |
| 50541 | | |
| 50542 | | > show #!34 models |
| 50543 | | |
| 50544 | | > fitmap #1 inMap #34 |
| 50545 | | |
| 50546 | | Fit molecule CopA-F8WHL2.pdb (#1) to map |
| 50547 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2662 atoms |
| 50548 | | average map value = 0.00815, steps = 124 |
| 50549 | | shifted from previous position = 0.121 |
| 50550 | | rotated from previous position = 0.688 degrees |
| 50551 | | atoms outside contour = 827, contour level = 0.0046305 |
| 50552 | | |
| 50553 | | Position of CopA-F8WHL2.pdb (#1) relative to |
| 50554 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 50555 | | Matrix rotation and translation |
| 50556 | | 0.76721005 0.57679881 0.28052073 208.92511024 |
| 50557 | | -0.11147861 0.55061919 -0.82727929 282.31807879 |
| 50558 | | -0.63163381 0.60342492 0.48674130 267.50075303 |
| 50559 | | Axis 0.78136633 0.49816506 -0.37589657 |
| 50560 | | Axis point -0.00000000 -262.54380394 361.43249335 |
| 50561 | | Rotation angle (degrees) 66.27888011 |
| 50562 | | Shift along axis 203.33543503 |
| 50563 | | |
| 50564 | | |
| 50565 | | > fitmap #1 inMap #34 |
| 50566 | | |
| 50567 | | Fit molecule CopA-F8WHL2.pdb (#1) to map |
| 50568 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2662 atoms |
| 50569 | | average map value = 0.00815, steps = 104 |
| 50570 | | shifted from previous position = 0.0272 |
| 50571 | | rotated from previous position = 0.0442 degrees |
| 50572 | | atoms outside contour = 829, contour level = 0.0046305 |
| 50573 | | |
| 50574 | | Position of CopA-F8WHL2.pdb (#1) relative to |
| 50575 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 50576 | | Matrix rotation and translation |
| 50577 | | 0.76735078 0.57654760 0.28065217 208.91656123 |
| 50578 | | -0.11083223 0.55034554 -0.82754819 282.29952623 |
| 50579 | | -0.63157660 0.60391444 0.48620813 267.47361378 |
| 50580 | | Axis 0.78165565 0.49812602 -0.37534639 |
| 50581 | | Axis point 0.00000000 -262.19588118 361.08511508 |
| 50582 | | Rotation angle (degrees) 66.29972170 |
| 50583 | | Shift along axis 203.52629268 |
| 50584 | | |
| 50585 | | |
| 50586 | | > fitmap #1 inMap #34 |
| 50587 | | |
| 50588 | | Fit molecule CopA-F8WHL2.pdb (#1) to map |
| 50589 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2662 atoms |
| 50590 | | average map value = 0.00815, steps = 96 |
| 50591 | | shifted from previous position = 0.0103 |
| 50592 | | rotated from previous position = 0.0355 degrees |
| 50593 | | atoms outside contour = 830, contour level = 0.0046305 |
| 50594 | | |
| 50595 | | Position of CopA-F8WHL2.pdb (#1) relative to |
| 50596 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 50597 | | Matrix rotation and translation |
| 50598 | | 0.76729951 0.57642489 0.28104414 208.92543386 |
| 50599 | | -0.11082751 0.55084691 -0.82721517 282.31298248 |
| 50600 | | -0.63163971 0.60357438 0.48654830 267.47749914 |
| 50601 | | Axis 0.78143623 0.49846899 -0.37534795 |
| 50602 | | Axis point 0.00000000 -262.53711812 361.15091334 |
| 50603 | | Rotation angle (degrees) 66.27499439 |
| 50604 | | Shift along axis 203.58904116 |
| 50605 | | |
| 50606 | | |
| 50607 | | > fitmap #1 inMap #34 |
| 50608 | | |
| 50609 | | Fit molecule CopA-F8WHL2.pdb (#1) to map |
| 50610 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2662 atoms |
| 50611 | | average map value = 0.00815, steps = 76 |
| 50612 | | shifted from previous position = 0.0115 |
| 50613 | | rotated from previous position = 0.0432 degrees |
| 50614 | | atoms outside contour = 829, contour level = 0.0046305 |
| 50615 | | |
| 50616 | | Position of CopA-F8WHL2.pdb (#1) relative to |
| 50617 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 50618 | | Matrix rotation and translation |
| 50619 | | 0.76729038 0.57673478 0.28043266 208.90991965 |
| 50620 | | -0.11114998 0.55026756 -0.82755743 282.29976135 |
| 50621 | | -0.63159414 0.60380677 0.48631906 267.48105056 |
| 50622 | | Axis 0.78159676 0.49801245 -0.37561963 |
| 50623 | | Axis point -0.00000000 -262.21899930 361.22198079 |
| 50624 | | Rotation angle (degrees) 66.30058043 |
| 50625 | | Shift along axis 203.40097692 |
| 50626 | | |
| 50627 | | |
| 50628 | | > hide #!34 models |
| 50629 | | |
| 50630 | | Drag select of 1 residues |
| 50631 | | |
| 50632 | | > delete sel |
| 50633 | | |
| 50634 | | > show #27.2 models |
| 50635 | | |
| 50636 | | > show #!34 models |
| 50637 | | |
| 50638 | | > hide #!34 models |
| 50639 | | |
| 50640 | | > hide #!1 models |
| 50641 | | |
| 50642 | | Drag select of 1 residues |
| 50643 | | Drag select of 3 residues |
| 50644 | | |
| 50645 | | > delete sel |
| 50646 | | |
| 50647 | | Drag select of 1 residues |
| 50648 | | |
| 50649 | | > delete sel |
| 50650 | | |
| 50651 | | > show #!1 models |
| 50652 | | |
| 50653 | | Drag select of 1 residues |
| 50654 | | |
| 50655 | | > select #1/A:651 |
| 50656 | | |
| 50657 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 50658 | | Drag select of 1 residues |
| 50659 | | Drag select of 3 residues |
| 50660 | | |
| 50661 | | > show sel atoms |
| 50662 | | |
| 50663 | | [Repeated 2 time(s)] |
| 50664 | | |
| 50665 | | > style sel stick |
| 50666 | | |
| 50667 | | Changed 23 atom styles |
| 50668 | | |
| 50669 | | > select add #1 |
| 50670 | | |
| 50671 | | 2669 atoms, 2707 bonds, 334 residues, 2 models selected |
| 50672 | | |
| 50673 | | > select subtract #1 |
| 50674 | | |
| 50675 | | 16 atoms, 2 residues, 1 model selected |
| 50676 | | |
| 50677 | | > select add #27.2 |
| 50678 | | |
| 50679 | | 1374 atoms, 1381 bonds, 190 residues, 1 model selected |
| 50680 | | |
| 50681 | | > select subtract #27.2 |
| 50682 | | |
| 50683 | | Nothing selected |
| 50684 | | |
| 50685 | | > hide #27.2#!1 atoms |
| 50686 | | |
| 50687 | | > show #!34 models |
| 50688 | | |
| 50689 | | > hide #!34 models |
| 50690 | | |
| 50691 | | > hide #27.2 models |
| 50692 | | |
| 50693 | | > hide #!1 models |
| 50694 | | |
| 50695 | | > show #!34 models |
| 50696 | | |
| 50697 | | > show #7 models |
| 50698 | | |
| 50699 | | > fitmap #7 inMap #34 |
| 50700 | | |
| 50701 | | Fit molecule CopBprime_O55029.pdb (#7) to map |
| 50702 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6695 atoms |
| 50703 | | average map value = 0.009017, steps = 44 |
| 50704 | | shifted from previous position = 0.0172 |
| 50705 | | rotated from previous position = 0.071 degrees |
| 50706 | | atoms outside contour = 2264, contour level = 0.0046305 |
| 50707 | | |
| 50708 | | Position of CopBprime_O55029.pdb (#7) relative to |
| 50709 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 50710 | | Matrix rotation and translation |
| 50711 | | -0.13037522 -0.23222210 -0.96388547 237.21265190 |
| 50712 | | 0.00507906 -0.97232699 0.23356887 213.62414076 |
| 50713 | | -0.99145171 0.02555596 0.12794681 275.48305004 |
| 50714 | | Axis -0.65667553 0.08702383 0.74913557 |
| 50715 | | Axis point 228.30486617 105.84568006 0.00000000 |
| 50716 | | Rotation angle (degrees) 170.88692890 |
| 50717 | | Shift along axis 69.19279888 |
| 50718 | | |
| 50719 | | |
| 50720 | | > fitmap #7 inMap #34 |
| 50721 | | |
| 50722 | | Fit molecule CopBprime_O55029.pdb (#7) to map |
| 50723 | | relion_locres_filtered_20240326_GT.mrc (#34) using 6695 atoms |
| 50724 | | average map value = 0.009016, steps = 44 |
| 50725 | | shifted from previous position = 0.00626 |
| 50726 | | rotated from previous position = 0.00774 degrees |
| 50727 | | atoms outside contour = 2263, contour level = 0.0046305 |
| 50728 | | |
| 50729 | | Position of CopBprime_O55029.pdb (#7) relative to |
| 50730 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 50731 | | Matrix rotation and translation |
| 50732 | | -0.13036153 -0.23228328 -0.96387257 237.21353161 |
| 50733 | | 0.00520514 -0.97231549 0.23361396 213.62027007 |
| 50734 | | -0.99145286 0.02543719 0.12796160 275.47804476 |
| 50735 | | Axis -0.65667642 0.08699973 0.74913759 |
| 50736 | | Axis point 228.29425794 105.86016341 0.00000000 |
| 50737 | | Rotation angle (degrees) 170.87970124 |
| 50738 | | Shift along axis 69.18333184 |
| 50739 | | |
| 50740 | | |
| 50741 | | > hide #!34 models |
| 50742 | | |
| 50743 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 50744 | | > dataset/Chimera sessions/20240709_leaf_fitting_v37_labelled.cxs" |
| 50745 | | |
| 50746 | | > close #2 |
| 50747 | | |
| 50748 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 50749 | | > dataset/Structure files/alphafold/CopBprime_O55029.pdb" |
| 50750 | | |
| 50751 | | CopBprime_O55029.pdb title: |
| 50752 | | Alphafold monomer V2.0 prediction for coatomer subunit β' (O55029) [more |
| 50753 | | info...] |
| 50754 | | |
| 50755 | | Chain information for CopBprime_O55029.pdb #2 |
| 50756 | | --- |
| 50757 | | Chain | Description | UniProt |
| 50758 | | A | coatomer subunit β' | COPB2_MOUSE 1-905 |
| 50759 | | |
| 50760 | | |
| 50761 | | > color #2 cyan |
| 50762 | | |
| 50763 | | > ui tool show Matchmaker |
| 50764 | | |
| 50765 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 50766 | | QTBUG which explains how to reproduce. |
| 50767 | | |
| 50768 | | > matchmaker #2 to #7 |
| 50769 | | |
| 50770 | | Parameters |
| 50771 | | --- |
| 50772 | | Chain pairing | bb |
| 50773 | | Alignment algorithm | Needleman-Wunsch |
| 50774 | | Similarity matrix | BLOSUM-62 |
| 50775 | | SS fraction | 0.3 |
| 50776 | | Gap open (HH/SS/other) | 18/18/6 |
| 50777 | | Gap extend | 1 |
| 50778 | | SS matrix | | | H | S | O |
| 50779 | | ---|---|---|--- |
| 50780 | | H | 6 | -9 | -6 |
| 50781 | | S | | 6 | -6 |
| 50782 | | O | | | 4 |
| 50783 | | Iteration cutoff | 2 |
| 50784 | | |
| 50785 | | Matchmaker CopBprime_O55029.pdb, chain A (#7) with CopBprime_O55029.pdb, chain |
| 50786 | | A (#2), sequence alignment score = 4630.6 |
| 50787 | | RMSD between 838 pruned atom pairs is 0.000 angstroms; (across all 838 pairs: |
| 50788 | | 0.000) |
| 50789 | | |
| 50790 | | |
| 50791 | | > hide #2 models |
| 50792 | | |
| 50793 | | > show #2 models |
| 50794 | | |
| 50795 | | > hide #2 models |
| 50796 | | |
| 50797 | | > show #2 models |
| 50798 | | |
| 50799 | | > show #!34 models |
| 50800 | | |
| 50801 | | > hide #2 models |
| 50802 | | |
| 50803 | | > hide #!34 models |
| 50804 | | |
| 50805 | | > show #2 models |
| 50806 | | |
| 50807 | | > hide #7 models |
| 50808 | | |
| 50809 | | Drag select of 11 residues |
| 50810 | | |
| 50811 | | > select up |
| 50812 | | |
| 50813 | | 519 atoms, 525 bonds, 67 residues, 1 model selected |
| 50814 | | |
| 50815 | | > delete sel |
| 50816 | | |
| 50817 | | > show #7 models |
| 50818 | | |
| 50819 | | > hide #7 models |
| 50820 | | |
| 50821 | | > show #7 models |
| 50822 | | |
| 50823 | | > hide #2 models |
| 50824 | | |
| 50825 | | > show #2 models |
| 50826 | | |
| 50827 | | Drag select of 414 residues |
| 50828 | | |
| 50829 | | > select up |
| 50830 | | |
| 50831 | | 3448 atoms, 3514 bonds, 436 residues, 2 models selected |
| 50832 | | Drag select of 484 residues |
| 50833 | | |
| 50834 | | > select up |
| 50835 | | |
| 50836 | | 3988 atoms, 4064 bonds, 500 residues, 2 models selected |
| 50837 | | |
| 50838 | | > combine sel |
| 50839 | | |
| 50840 | | Remapping chain ID 'A' in CopBprime_O55029.pdb #7 to 'B' |
| 50841 | | |
| 50842 | | > select add #2 |
| 50843 | | |
| 50844 | | 8689 atoms, 8879 bonds, 1088 residues, 2 models selected |
| 50845 | | |
| 50846 | | > select subtract #2 |
| 50847 | | |
| 50848 | | 1994 atoms, 2032 bonds, 250 residues, 1 model selected |
| 50849 | | |
| 50850 | | > delete sel |
| 50851 | | |
| 50852 | | > hide #3 models |
| 50853 | | |
| 50854 | | > hide #2 models |
| 50855 | | |
| 50856 | | Drag select of 2 residues, 1 pseudobonds |
| 50857 | | |
| 50858 | | > delete sel |
| 50859 | | |
| 50860 | | > show #3 models |
| 50861 | | |
| 50862 | | > hide #3 models |
| 50863 | | |
| 50864 | | > show #2 models |
| 50865 | | |
| 50866 | | > hide #2 models |
| 50867 | | |
| 50868 | | > hide #!7 models |
| 50869 | | |
| 50870 | | > show #!7 models |
| 50871 | | |
| 50872 | | > hide #!7 models |
| 50873 | | |
| 50874 | | > show #!7 models |
| 50875 | | |
| 50876 | | > hide #!7 models |
| 50877 | | |
| 50878 | | > show #!7 models |
| 50879 | | |
| 50880 | | > show #3 models |
| 50881 | | |
| 50882 | | > hide #3 models |
| 50883 | | |
| 50884 | | > show #3 models |
| 50885 | | |
| 50886 | | > show #2 models |
| 50887 | | |
| 50888 | | > hide #2 models |
| 50889 | | |
| 50890 | | > hide #3 models |
| 50891 | | |
| 50892 | | > hide #!7 models |
| 50893 | | |
| 50894 | | > show #2 models |
| 50895 | | |
| 50896 | | > hide #2 models |
| 50897 | | |
| 50898 | | > show #2 models |
| 50899 | | |
| 50900 | | > hide #2 models |
| 50901 | | |
| 50902 | | > show #2 models |
| 50903 | | |
| 50904 | | > hide #2 models |
| 50905 | | |
| 50906 | | > show #3 models |
| 50907 | | |
| 50908 | | > hide #3 models |
| 50909 | | |
| 50910 | | > show #3 models |
| 50911 | | |
| 50912 | | > hide #3 models |
| 50913 | | |
| 50914 | | > show #!7 models |
| 50915 | | |
| 50916 | | > hide #!7 models |
| 50917 | | |
| 50918 | | > show #3 models |
| 50919 | | |
| 50920 | | > show #!7 models |
| 50921 | | |
| 50922 | | > hide #!7 models |
| 50923 | | |
| 50924 | | > hide #3 models |
| 50925 | | |
| 50926 | | > show #3 models |
| 50927 | | |
| 50928 | | > hide #3 models |
| 50929 | | |
| 50930 | | > show #2 models |
| 50931 | | |
| 50932 | | > hide #2 models |
| 50933 | | |
| 50934 | | > show #!7 models |
| 50935 | | |
| 50936 | | > show #!34 models |
| 50937 | | |
| 50938 | | > fitmap #7 inMap #34 |
| 50939 | | |
| 50940 | | Fit molecule CopBprime_O55029.pdb (#7) to map |
| 50941 | | relion_locres_filtered_20240326_GT.mrc (#34) using 4686 atoms |
| 50942 | | average map value = 0.009331, steps = 56 |
| 50943 | | shifted from previous position = 0.857 |
| 50944 | | rotated from previous position = 4.01 degrees |
| 50945 | | atoms outside contour = 1365, contour level = 0.0046305 |
| 50946 | | |
| 50947 | | Position of CopBprime_O55029.pdb (#7) relative to |
| 50948 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 50949 | | Matrix rotation and translation |
| 50950 | | -0.18382139 -0.18803254 -0.96480747 236.85450936 |
| 50951 | | 0.00729281 -0.98176700 0.18994833 212.89973190 |
| 50952 | | -0.98293261 0.02788041 0.18184106 275.49974843 |
| 50953 | | Axis -0.63692579 0.07123166 0.76762725 |
| 50954 | | Axis point 224.08999267 105.52981372 0.00000000 |
| 50955 | | Rotation angle (degrees) 172.69063725 |
| 50956 | | Shift along axis 75.78756851 |
| 50957 | | |
| 50958 | | |
| 50959 | | > fitmap #7 inMap #34 |
| 50960 | | |
| 50961 | | Fit molecule CopBprime_O55029.pdb (#7) to map |
| 50962 | | relion_locres_filtered_20240326_GT.mrc (#34) using 4686 atoms |
| 50963 | | average map value = 0.009331, steps = 48 |
| 50964 | | shifted from previous position = 0.0294 |
| 50965 | | rotated from previous position = 0.0588 degrees |
| 50966 | | atoms outside contour = 1364, contour level = 0.0046305 |
| 50967 | | |
| 50968 | | Position of CopBprime_O55029.pdb (#7) relative to |
| 50969 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 50970 | | Matrix rotation and translation |
| 50971 | | -0.18351764 -0.18857053 -0.96476029 236.87734116 |
| 50972 | | 0.00658726 -0.98164233 0.19061723 212.90804390 |
| 50973 | | -0.98299434 0.02862650 0.18139084 275.47318612 |
| 50974 | | Axis -0.63704804 0.07170759 0.76748148 |
| 50975 | | Axis point 224.13935981 105.44289980 0.00000000 |
| 50976 | | Rotation angle (degrees) 172.69554744 |
| 50977 | | Shift along axis 75.78544446 |
| 50978 | | |
| 50979 | | |
| 50980 | | > fitmap #7 inMap #34 |
| 50981 | | |
| 50982 | | Fit molecule CopBprime_O55029.pdb (#7) to map |
| 50983 | | relion_locres_filtered_20240326_GT.mrc (#34) using 4686 atoms |
| 50984 | | average map value = 0.009331, steps = 56 |
| 50985 | | shifted from previous position = 0.857 |
| 50986 | | rotated from previous position = 4.01 degrees |
| 50987 | | atoms outside contour = 1365, contour level = 0.0046305 |
| 50988 | | |
| 50989 | | Position of CopBprime_O55029.pdb (#7) relative to |
| 50990 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 50991 | | Matrix rotation and translation |
| 50992 | | -0.18382139 -0.18803254 -0.96480747 236.85450936 |
| 50993 | | 0.00729281 -0.98176700 0.18994833 212.89973190 |
| 50994 | | -0.98293261 0.02788041 0.18184106 275.49974843 |
| 50995 | | Axis -0.63692579 0.07123166 0.76762725 |
| 50996 | | Axis point 224.08999267 105.52981372 0.00000000 |
| 50997 | | Rotation angle (degrees) 172.69063725 |
| 50998 | | Shift along axis 75.78756851 |
| 50999 | | |
| 51000 | | |
| 51001 | | > fitmap #7 inMap #34 |
| 51002 | | |
| 51003 | | Fit molecule CopBprime_O55029.pdb (#7) to map |
| 51004 | | relion_locres_filtered_20240326_GT.mrc (#34) using 4686 atoms |
| 51005 | | average map value = 0.009331, steps = 48 |
| 51006 | | shifted from previous position = 0.0294 |
| 51007 | | rotated from previous position = 0.0588 degrees |
| 51008 | | atoms outside contour = 1364, contour level = 0.0046305 |
| 51009 | | |
| 51010 | | Position of CopBprime_O55029.pdb (#7) relative to |
| 51011 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 51012 | | Matrix rotation and translation |
| 51013 | | -0.18351764 -0.18857053 -0.96476029 236.87734116 |
| 51014 | | 0.00658726 -0.98164233 0.19061723 212.90804390 |
| 51015 | | -0.98299434 0.02862650 0.18139084 275.47318612 |
| 51016 | | Axis -0.63704804 0.07170759 0.76748148 |
| 51017 | | Axis point 224.13935981 105.44289980 0.00000000 |
| 51018 | | Rotation angle (degrees) 172.69554744 |
| 51019 | | Shift along axis 75.78544446 |
| 51020 | | |
| 51021 | | |
| 51022 | | > fitmap #7 inMap #34 |
| 51023 | | |
| 51024 | | Fit molecule CopBprime_O55029.pdb (#7) to map |
| 51025 | | relion_locres_filtered_20240326_GT.mrc (#34) using 4686 atoms |
| 51026 | | average map value = 0.009331, steps = 48 |
| 51027 | | shifted from previous position = 0.00591 |
| 51028 | | rotated from previous position = 0.0108 degrees |
| 51029 | | atoms outside contour = 1364, contour level = 0.0046305 |
| 51030 | | |
| 51031 | | Position of CopBprime_O55029.pdb (#7) relative to |
| 51032 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 51033 | | Matrix rotation and translation |
| 51034 | | -0.18348706 -0.18866650 -0.96474735 236.88099484 |
| 51035 | | 0.00644898 -0.98161951 0.19073949 212.90869913 |
| 51036 | | -0.98300097 0.02877659 0.18133119 275.46732152 |
| 51037 | | Axis -0.63706082 0.07179834 0.76746238 |
| 51038 | | Axis point 224.14561608 105.42520113 0.00000000 |
| 51039 | | Rotation angle (degrees) 172.69695653 |
| 51040 | | Shift along axis 75.78969715 |
| 51041 | | |
| 51042 | | |
| 51043 | | > hide #!34 models |
| 51044 | | |
| 51045 | | > show #!34 models |
| 51046 | | |
| 51047 | | > hide #!34 models |
| 51048 | | |
| 51049 | | > show #3 models |
| 51050 | | |
| 51051 | | > hide #3 models |
| 51052 | | |
| 51053 | | > show #3 models |
| 51054 | | |
| 51055 | | > hide #3 models |
| 51056 | | |
| 51057 | | > show #3 models |
| 51058 | | |
| 51059 | | > hide #3 models |
| 51060 | | |
| 51061 | | > show #2 models |
| 51062 | | |
| 51063 | | > hide #2 models |
| 51064 | | |
| 51065 | | > show #2 models |
| 51066 | | |
| 51067 | | > hide #2 models |
| 51068 | | |
| 51069 | | > show #3 models |
| 51070 | | |
| 51071 | | > hide #!7 models |
| 51072 | | |
| 51073 | | Drag select of 1156 residues |
| 51074 | | |
| 51075 | | > select up |
| 51076 | | |
| 51077 | | 9356 atoms, 9578 bonds, 1170 residues, 1 model selected |
| 51078 | | |
| 51079 | | > delete sel |
| 51080 | | |
| 51081 | | > show #!34 models |
| 51082 | | |
| 51083 | | > fitmap #3 inMap #34 |
| 51084 | | |
| 51085 | | Fit molecule combination (#3) to map relion_locres_filtered_20240326_GT.mrc |
| 51086 | | (#34) using 4034 atoms |
| 51087 | | average map value = 0.009676, steps = 72 |
| 51088 | | shifted from previous position = 1.07 |
| 51089 | | rotated from previous position = 3.24 degrees |
| 51090 | | atoms outside contour = 1464, contour level = 0.0046305 |
| 51091 | | |
| 51092 | | Position of combination (#3) relative to |
| 51093 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 51094 | | Matrix rotation and translation |
| 51095 | | -0.09135641 -0.26647558 -0.95950236 236.85335835 |
| 51096 | | 0.03080497 -0.96382670 0.26474354 213.36709311 |
| 51097 | | -0.99534168 -0.00537142 0.09626052 277.10719384 |
| 51098 | | Axis -0.66982079 0.08887299 0.73718498 |
| 51099 | | Axis point 229.97457226 109.33292722 0.00000000 |
| 51100 | | Rotation angle (degrees) 168.36757452 |
| 51101 | | Shift along axis 64.59252983 |
| 51102 | | |
| 51103 | | |
| 51104 | | > fitmap #3 inMap #34 |
| 51105 | | |
| 51106 | | Fit molecule combination (#3) to map relion_locres_filtered_20240326_GT.mrc |
| 51107 | | (#34) using 4034 atoms |
| 51108 | | average map value = 0.009675, steps = 48 |
| 51109 | | shifted from previous position = 0.0204 |
| 51110 | | rotated from previous position = 0.0825 degrees |
| 51111 | | atoms outside contour = 1466, contour level = 0.0046305 |
| 51112 | | |
| 51113 | | Position of combination (#3) relative to |
| 51114 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 51115 | | Matrix rotation and translation |
| 51116 | | -0.09042542 -0.26652009 -0.95957818 236.89404424 |
| 51117 | | 0.03189874 -0.96380625 0.26468846 213.38303781 |
| 51118 | | -0.99539224 -0.00667477 0.09565424 277.11938100 |
| 51119 | | Axis -0.67013594 0.08844341 0.73695019 |
| 51120 | | Axis point 230.02990386 109.49648079 0.00000000 |
| 51121 | | Rotation angle (degrees) 168.31863565 |
| 51122 | | Shift along axis 64.34428851 |
| 51123 | | |
| 51124 | | |
| 51125 | | > hide #!34 models |
| 51126 | | |
| 51127 | | > show #!7 models |
| 51128 | | |
| 51129 | | > show #2 models |
| 51130 | | |
| 51131 | | > hide #2 models |
| 51132 | | |
| 51133 | | > show #2 models |
| 51134 | | |
| 51135 | | > hide #2 models |
| 51136 | | |
| 51137 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 51138 | | QTBUG which explains how to reproduce. |
| 51139 | | |
| 51140 | | > close #2 |
| 51141 | | |
| 51142 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 51143 | | QTBUG which explains how to reproduce. |
| 51144 | | |
| 51145 | | > rename #3 CopBprime_O55029.pdb |
| 51146 | | |
| 51147 | | > hide #!3 models |
| 51148 | | |
| 51149 | | > show #!3 models |
| 51150 | | |
| 51151 | | > hide #!3 models |
| 51152 | | |
| 51153 | | > show #!3 models |
| 51154 | | |
| 51155 | | > rename #3 CopBprime_O55029_solenoid.pdb |
| 51156 | | |
| 51157 | | > hide #!3 models |
| 51158 | | |
| 51159 | | > show #!3 models |
| 51160 | | |
| 51161 | | > hide #!7 models |
| 51162 | | |
| 51163 | | > show #!7 models |
| 51164 | | |
| 51165 | | > rename #7 CopBprime_O55029_beta_props.pdb |
| 51166 | | |
| 51167 | | > hide #!7 models |
| 51168 | | |
| 51169 | | > show #!7 models |
| 51170 | | |
| 51171 | | > hide #!7 models |
| 51172 | | |
| 51173 | | > show #!7 models |
| 51174 | | |
| 51175 | | > hide #!7 models |
| 51176 | | |
| 51177 | | > show #!7 models |
| 51178 | | |
| 51179 | | > hide #!3 models |
| 51180 | | |
| 51181 | | > show #!3 models |
| 51182 | | |
| 51183 | | > show #!34 models |
| 51184 | | |
| 51185 | | > hide #!34 models |
| 51186 | | |
| 51187 | | > hide #!3 models |
| 51188 | | |
| 51189 | | > hide #!7 models |
| 51190 | | |
| 51191 | | > show #!1 models |
| 51192 | | |
| 51193 | | > rename #1 CopA-F8WHL2_E320-V651.pdb |
| 51194 | | |
| 51195 | | > hide #!1 models |
| 51196 | | |
| 51197 | | > close #13 |
| 51198 | | |
| 51199 | | > close #14 |
| 51200 | | |
| 51201 | | > close #15 |
| 51202 | | |
| 51203 | | > close #16 |
| 51204 | | |
| 51205 | | > close #17 |
| 51206 | | |
| 51207 | | > close #18 |
| 51208 | | |
| 51209 | | > close #19 |
| 51210 | | |
| 51211 | | > close #20 |
| 51212 | | |
| 51213 | | > close #21 |
| 51214 | | |
| 51215 | | > close #22 |
| 51216 | | |
| 51217 | | > close #23 |
| 51218 | | |
| 51219 | | > show #!1 models |
| 51220 | | |
| 51221 | | > hide #!1 models |
| 51222 | | |
| 51223 | | > show #!1 models |
| 51224 | | |
| 51225 | | > show #!34 models |
| 51226 | | |
| 51227 | | > fitmap #1 inMap #34 |
| 51228 | | |
| 51229 | | Fit molecule CopA-F8WHL2_E320-V651.pdb (#1) to map |
| 51230 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2653 atoms |
| 51231 | | average map value = 0.008168, steps = 80 |
| 51232 | | shifted from previous position = 0.0284 |
| 51233 | | rotated from previous position = 0.0393 degrees |
| 51234 | | atoms outside contour = 819, contour level = 0.0046305 |
| 51235 | | |
| 51236 | | Position of CopA-F8WHL2_E320-V651.pdb (#1) relative to |
| 51237 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 51238 | | Matrix rotation and translation |
| 51239 | | 0.76766827 0.57618568 0.28052716 208.93708075 |
| 51240 | | -0.11090966 0.55059127 -0.82737434 282.32456434 |
| 51241 | | -0.63117706 0.60403586 0.48657600 267.49371213 |
| 51242 | | Axis 0.78180163 0.49795079 -0.37527486 |
| 51243 | | Axis point 0.00000000 -262.29142513 361.19565696 |
| 51244 | | Rotation angle (degrees) 66.27058784 |
| 51245 | | Shift along axis 203.54742588 |
| 51246 | | |
| 51247 | | |
| 51248 | | > fitmap #1 inMap #34 |
| 51249 | | |
| 51250 | | Fit molecule CopA-F8WHL2_E320-V651.pdb (#1) to map |
| 51251 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2653 atoms |
| 51252 | | average map value = 0.008168, steps = 96 |
| 51253 | | shifted from previous position = 0.0317 |
| 51254 | | rotated from previous position = 0.0689 degrees |
| 51255 | | atoms outside contour = 821, contour level = 0.0046305 |
| 51256 | | |
| 51257 | | Position of CopA-F8WHL2_E320-V651.pdb (#1) relative to |
| 51258 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 51259 | | Matrix rotation and translation |
| 51260 | | 0.76760054 0.57646141 0.28014577 208.91467280 |
| 51261 | | -0.11057666 0.54964981 -0.82804462 282.29207163 |
| 51262 | | -0.63131784 0.60462991 0.48565467 267.45428422 |
| 51263 | | Axis 0.78213018 0.49758908 -0.37506998 |
| 51264 | | Axis point -0.00000000 -261.61679014 360.88280205 |
| 51265 | | Rotation angle (degrees) 66.33098692 |
| 51266 | | Shift along axis 203.54984830 |
| 51267 | | |
| 51268 | | |
| 51269 | | > fitmap #1 inMap #34 |
| 51270 | | |
| 51271 | | Fit molecule CopA-F8WHL2_E320-V651.pdb (#1) to map |
| 51272 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2653 atoms |
| 51273 | | average map value = 0.008168, steps = 80 |
| 51274 | | shifted from previous position = 0.00676 |
| 51275 | | rotated from previous position = 0.0138 degrees |
| 51276 | | atoms outside contour = 821, contour level = 0.0046305 |
| 51277 | | |
| 51278 | | Position of CopA-F8WHL2_E320-V651.pdb (#1) relative to |
| 51279 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 51280 | | Matrix rotation and translation |
| 51281 | | 0.76768046 0.57644333 0.27996392 208.90568347 |
| 51282 | | -0.11076225 0.54965468 -0.82801658 282.29416732 |
| 51283 | | -0.63118811 0.60464272 0.48580732 267.46074649 |
| 51284 | | Axis 0.78216631 0.49744725 -0.37518275 |
| 51285 | | Axis point 0.00000000 -261.62563490 360.97838193 |
| 51286 | | Rotation angle (degrees) 66.32355949 |
| 51287 | | Shift along axis 203.47878638 |
| 51288 | | |
| 51289 | | |
| 51290 | | > fitmap #1 inMap #34 |
| 51291 | | |
| 51292 | | Fit molecule CopA-F8WHL2_E320-V651.pdb (#1) to map |
| 51293 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2653 atoms |
| 51294 | | average map value = 0.008168, steps = 80 |
| 51295 | | shifted from previous position = 0.0302 |
| 51296 | | rotated from previous position = 0.0497 degrees |
| 51297 | | atoms outside contour = 819, contour level = 0.0046305 |
| 51298 | | |
| 51299 | | Position of CopA-F8WHL2_E320-V651.pdb (#1) relative to |
| 51300 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 51301 | | Matrix rotation and translation |
| 51302 | | 0.76758721 0.57639867 0.28031134 208.92856298 |
| 51303 | | -0.11102829 0.55030521 -0.82754873 282.32142277 |
| 51304 | | -0.63125478 0.60409333 0.48640379 267.48878305 |
| 51305 | | Axis 0.78182707 0.49781093 -0.37540739 |
| 51306 | | Axis point -0.00000000 -262.14374413 361.20627789 |
| 51307 | | Rotation angle (degrees) 66.28746428 |
| 51308 | | Shift along axis 203.47143225 |
| 51309 | | |
| 51310 | | |
| 51311 | | > hide #!1 models |
| 51312 | | |
| 51313 | | > show #27.2 models |
| 51314 | | |
| 51315 | | > fitmap #27.2 inMap #34 |
| 51316 | | |
| 51317 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) to map |
| 51318 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1374 atoms |
| 51319 | | average map value = 0.009225, steps = 60 |
| 51320 | | shifted from previous position = 0.0586 |
| 51321 | | rotated from previous position = 0.642 degrees |
| 51322 | | atoms outside contour = 514, contour level = 0.0046305 |
| 51323 | | |
| 51324 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) relative to |
| 51325 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 51326 | | Matrix rotation and translation |
| 51327 | | 0.99061919 0.02011670 -0.13516267 -48.16359820 |
| 51328 | | 0.01727947 0.96272535 0.26992837 -114.34526161 |
| 51329 | | 0.13555460 -0.26973176 0.95334659 -30.33373192 |
| 51330 | | Axis -0.89382876 -0.44838384 -0.00469925 |
| 51331 | | Axis point 0.00000000 -153.28089944 245.53192643 |
| 51332 | | Rotation angle (degrees) 17.57062500 |
| 51333 | | Shift along axis 94.46312279 |
| 51334 | | |
| 51335 | | |
| 51336 | | > fitmap #27.2 inMap #34 |
| 51337 | | |
| 51338 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) to map |
| 51339 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1374 atoms |
| 51340 | | average map value = 0.009225, steps = 48 |
| 51341 | | shifted from previous position = 0.00175 |
| 51342 | | rotated from previous position = 0.0198 degrees |
| 51343 | | atoms outside contour = 515, contour level = 0.0046305 |
| 51344 | | |
| 51345 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) relative to |
| 51346 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 51347 | | Matrix rotation and translation |
| 51348 | | 0.99060535 0.01990631 -0.13529518 -48.10906796 |
| 51349 | | 0.01748321 0.96279489 0.26966709 -114.30676032 |
| 51350 | | 0.13562958 -0.26949906 0.95340174 -30.37812537 |
| 51351 | | Axis -0.89352881 -0.44898790 -0.00401565 |
| 51352 | | Axis point 0.00000000 -153.75246581 245.44309919 |
| 51353 | | Rotation angle (degrees) 17.56010290 |
| 51354 | | Shift along axis 94.43117853 |
| 51355 | | |
| 51356 | | |
| 51357 | | > hide #27.2 models |
| 51358 | | |
| 51359 | | > show #!30 models |
| 51360 | | |
| 51361 | | > fitmap #27.2 inMap #34 |
| 51362 | | |
| 51363 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) to map |
| 51364 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1374 atoms |
| 51365 | | average map value = 0.009229, steps = 60 |
| 51366 | | shifted from previous position = 0.0327 |
| 51367 | | rotated from previous position = 0.0399 degrees |
| 51368 | | atoms outside contour = 510, contour level = 0.0046305 |
| 51369 | | |
| 51370 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) relative to |
| 51371 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 51372 | | Matrix rotation and translation |
| 51373 | | 0.99066797 0.01990936 -0.13483544 -48.16065155 |
| 51374 | | 0.01742655 0.96265237 0.27017905 -114.38533874 |
| 51375 | | 0.13517875 -0.27000745 0.95332192 -30.28651744 |
| 51376 | | Axis -0.89447200 -0.44710507 -0.00411118 |
| 51377 | | Axis point 0.00000000 -153.26991275 246.05491552 |
| 51378 | | Rotation angle (degrees) 17.57526180 |
| 51379 | | Shift along axis 94.34513235 |
| 51380 | | |
| 51381 | | |
| 51382 | | > fitmap #27.2 inMap #34 |
| 51383 | | |
| 51384 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) to map |
| 51385 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1374 atoms |
| 51386 | | average map value = 0.009225, steps = 76 |
| 51387 | | shifted from previous position = 0.0315 |
| 51388 | | rotated from previous position = 0.0318 degrees |
| 51389 | | atoms outside contour = 515, contour level = 0.0046305 |
| 51390 | | |
| 51391 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) relative to |
| 51392 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 51393 | | Matrix rotation and translation |
| 51394 | | 0.99069795 0.02037968 -0.13454454 -48.31506305 |
| 51395 | | 0.01689558 0.96264976 0.27022208 -114.38942217 |
| 51396 | | 0.13502631 -0.26998167 0.95335082 -30.29682417 |
| 51397 | | Axis -0.89476385 -0.44650236 -0.00577088 |
| 51398 | | Axis point 0.00000000 -152.71992024 246.09204308 |
| 51399 | | Rotation angle (degrees) 17.56992189 |
| 51400 | | Shift along axis 94.48055777 |
| 51401 | | |
| 51402 | | |
| 51403 | | > hide #!30 models |
| 51404 | | |
| 51405 | | > show #!4 models |
| 51406 | | |
| 51407 | | > hide #!4 models |
| 51408 | | |
| 51409 | | > show #!1 models |
| 51410 | | |
| 51411 | | > hide #!1 models |
| 51412 | | |
| 51413 | | > show #!1 models |
| 51414 | | |
| 51415 | | > hide #!1 models |
| 51416 | | |
| 51417 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 51418 | | > dataset/Structure files/alphafold/CopA-Q8CIE6.pdb" |
| 51419 | | |
| 51420 | | CopA-Q8CIE6.pdb title: |
| 51421 | | Alphafold monomer V2.0 prediction for coatomer subunit α (Q8CIE6) [more |
| 51422 | | info...] |
| 51423 | | |
| 51424 | | Chain information for CopA-Q8CIE6.pdb #2 |
| 51425 | | --- |
| 51426 | | Chain | Description | UniProt |
| 51427 | | A | coatomer subunit α | COPA_MOUSE 1-1224 |
| 51428 | | |
| 51429 | | |
| 51430 | | > color #1 #0038ffff |
| 51431 | | |
| 51432 | | > color #2 #004affff |
| 51433 | | |
| 51434 | | > ui tool show Matchmaker |
| 51435 | | |
| 51436 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 51437 | | QTBUG which explains how to reproduce. |
| 51438 | | |
| 51439 | | > matchmaker #2 to #1 |
| 51440 | | |
| 51441 | | Parameters |
| 51442 | | --- |
| 51443 | | Chain pairing | bb |
| 51444 | | Alignment algorithm | Needleman-Wunsch |
| 51445 | | Similarity matrix | BLOSUM-62 |
| 51446 | | SS fraction | 0.3 |
| 51447 | | Gap open (HH/SS/other) | 18/18/6 |
| 51448 | | Gap extend | 1 |
| 51449 | | SS matrix | | | H | S | O |
| 51450 | | ---|---|---|--- |
| 51451 | | H | 6 | -9 | -6 |
| 51452 | | S | | 6 | -6 |
| 51453 | | O | | | 4 |
| 51454 | | Iteration cutoff | 2 |
| 51455 | | |
| 51456 | | Matchmaker CopA-F8WHL2_E320-V651.pdb, chain A (#1) with CopA-Q8CIE6.pdb, chain |
| 51457 | | A (#2), sequence alignment score = 4988.1 |
| 51458 | | RMSD between 321 pruned atom pairs is 0.509 angstroms; (across all 323 pairs: |
| 51459 | | 0.621) |
| 51460 | | |
| 51461 | | |
| 51462 | | > hide #2 models |
| 51463 | | |
| 51464 | | > show #2 models |
| 51465 | | |
| 51466 | | > fitmap #2 inMap #34 |
| 51467 | | |
| 51468 | | Fit molecule CopA-Q8CIE6.pdb (#2) to map |
| 51469 | | relion_locres_filtered_20240326_GT.mrc (#34) using 9742 atoms |
| 51470 | | average map value = 0.005153, steps = 224 |
| 51471 | | shifted from previous position = 7.29 |
| 51472 | | rotated from previous position = 9.89 degrees |
| 51473 | | atoms outside contour = 5755, contour level = 0.0046305 |
| 51474 | | |
| 51475 | | Position of CopA-Q8CIE6.pdb (#2) relative to |
| 51476 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 51477 | | Matrix rotation and translation |
| 51478 | | -0.35043779 0.71123122 -0.60937961 201.62294206 |
| 51479 | | 0.22926641 -0.56570149 -0.79209768 280.19300043 |
| 51480 | | -0.90809155 -0.41729124 0.03518175 263.45571687 |
| 51481 | | Axis 0.55142524 0.43947298 -0.70907948 |
| 51482 | | Axis point 235.27609784 200.07403859 0.00000000 |
| 51483 | | Rotation angle (degrees) 160.13211482 |
| 51484 | | Shift along axis 47.50618780 |
| 51485 | | |
| 51486 | | |
| 51487 | | > hide #!34 models |
| 51488 | | |
| 51489 | | > hide #2 models |
| 51490 | | |
| 51491 | | > show #2 models |
| 51492 | | |
| 51493 | | > show #!1 models |
| 51494 | | |
| 51495 | | > hide #2 models |
| 51496 | | |
| 51497 | | > show #2 models |
| 51498 | | |
| 51499 | | > hide #!1 models |
| 51500 | | |
| 51501 | | Drag select of 275 residues |
| 51502 | | |
| 51503 | | > select up |
| 51504 | | |
| 51505 | | 2492 atoms, 2565 bonds, 306 residues, 1 model selected |
| 51506 | | |
| 51507 | | > delete sel |
| 51508 | | |
| 51509 | | Drag select of 11 residues, 1 pseudobonds |
| 51510 | | |
| 51511 | | > delete sel |
| 51512 | | |
| 51513 | | Drag select of 1 residues |
| 51514 | | |
| 51515 | | > delete sel |
| 51516 | | |
| 51517 | | > select clear |
| 51518 | | |
| 51519 | | [Repeated 1 time(s)]Drag select of 1 pseudobonds |
| 51520 | | |
| 51521 | | > delete sel |
| 51522 | | |
| 51523 | | Drag select of 3 residues |
| 51524 | | Drag select of 1 pseudobonds |
| 51525 | | |
| 51526 | | > delete sel |
| 51527 | | |
| 51528 | | > fitmap #2 inMap #34 |
| 51529 | | |
| 51530 | | Fit molecule CopA-Q8CIE6.pdb (#2) to map |
| 51531 | | relion_locres_filtered_20240326_GT.mrc (#34) using 7152 atoms |
| 51532 | | average map value = 0.003986, steps = 112 |
| 51533 | | shifted from previous position = 5.7 |
| 51534 | | rotated from previous position = 8.46 degrees |
| 51535 | | atoms outside contour = 4702, contour level = 0.0046305 |
| 51536 | | |
| 51537 | | Position of CopA-Q8CIE6.pdb (#2) relative to |
| 51538 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 51539 | | Matrix rotation and translation |
| 51540 | | -0.30646756 0.79102650 -0.52948532 203.77067889 |
| 51541 | | 0.27471428 -0.45908197 -0.84485254 282.23864504 |
| 51542 | | -0.91137791 -0.40437707 -0.07661254 261.25682109 |
| 51543 | | Axis 0.56562448 0.49039689 -0.66300818 |
| 51544 | | Axis point 250.43692295 213.54811926 0.00000000 |
| 51545 | | Rotation angle (degrees) 157.08463717 |
| 51546 | | Shift along axis 80.45122939 |
| 51547 | | |
| 51548 | | |
| 51549 | | > show #!34 models |
| 51550 | | |
| 51551 | | > hide #!34 models |
| 51552 | | |
| 51553 | | Drag select of 251 residues |
| 51554 | | |
| 51555 | | > select up |
| 51556 | | |
| 51557 | | 2175 atoms, 2216 bonds, 272 residues, 1 model selected |
| 51558 | | |
| 51559 | | > delete sel |
| 51560 | | |
| 51561 | | Drag select of 37 residues, 2 pseudobonds |
| 51562 | | |
| 51563 | | > select up |
| 51564 | | |
| 51565 | | 939 atoms, 958 bonds, 2 pseudobonds, 127 residues, 2 models selected |
| 51566 | | |
| 51567 | | > delete sel |
| 51568 | | |
| 51569 | | > fitmap #2 inMap #34 |
| 51570 | | |
| 51571 | | Fit molecule CopA-Q8CIE6.pdb (#2) to map |
| 51572 | | relion_locres_filtered_20240326_GT.mrc (#34) using 4038 atoms |
| 51573 | | average map value = 0.007489, steps = 224 |
| 51574 | | shifted from previous position = 10.5 |
| 51575 | | rotated from previous position = 31.8 degrees |
| 51576 | | atoms outside contour = 1662, contour level = 0.0046305 |
| 51577 | | |
| 51578 | | Position of CopA-Q8CIE6.pdb (#2) relative to |
| 51579 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 51580 | | Matrix rotation and translation |
| 51581 | | -0.09445487 0.80442057 -0.58650305 199.66806763 |
| 51582 | | -0.25064251 -0.58937509 -0.76799436 283.33369896 |
| 51583 | | -0.96346075 0.07446179 0.25729134 274.84434220 |
| 51584 | | Axis 0.60099022 0.26891357 -0.75265945 |
| 51585 | | Axis point 287.34471669 134.75932293 0.00000000 |
| 51586 | | Rotation angle (degrees) 135.50154190 |
| 51587 | | Shift along axis -10.67336194 |
| 51588 | | |
| 51589 | | |
| 51590 | | > show #!34 models |
| 51591 | | |
| 51592 | | > hide #!34 models |
| 51593 | | |
| 51594 | | Drag select of 10 residues |
| 51595 | | |
| 51596 | | > select up |
| 51597 | | |
| 51598 | | 372 atoms, 384 bonds, 48 residues, 1 model selected |
| 51599 | | |
| 51600 | | > delete sel |
| 51601 | | |
| 51602 | | > fitmap #2 inMap #34 |
| 51603 | | |
| 51604 | | Fit molecule CopA-Q8CIE6.pdb (#2) to map |
| 51605 | | relion_locres_filtered_20240326_GT.mrc (#34) using 3666 atoms |
| 51606 | | average map value = 0.00767, steps = 104 |
| 51607 | | shifted from previous position = 0.153 |
| 51608 | | rotated from previous position = 1.3 degrees |
| 51609 | | atoms outside contour = 1479, contour level = 0.0046305 |
| 51610 | | |
| 51611 | | Position of CopA-Q8CIE6.pdb (#2) relative to |
| 51612 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 51613 | | Matrix rotation and translation |
| 51614 | | -0.07487981 0.81210513 -0.57868668 199.53827458 |
| 51615 | | -0.24898707 -0.57716149 -0.77774678 283.44604356 |
| 51616 | | -0.96560782 0.08584797 0.24542142 274.88322004 |
| 51617 | | Axis 0.60740961 0.27214109 -0.74631950 |
| 51618 | | Axis point 291.40138479 134.89086090 0.00000000 |
| 51619 | | Rotation angle (degrees) 134.69316763 |
| 51620 | | Shift along axis -6.81192531 |
| 51621 | | |
| 51622 | | |
| 51623 | | > show #27.2 models |
| 51624 | | |
| 51625 | | > fitmap #27.2 inMap #34 |
| 51626 | | |
| 51627 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) to map |
| 51628 | | relion_locres_filtered_20240326_GT.mrc (#34) using 1374 atoms |
| 51629 | | average map value = 0.009228, steps = 64 |
| 51630 | | shifted from previous position = 0.0262 |
| 51631 | | rotated from previous position = 0.036 degrees |
| 51632 | | atoms outside contour = 512, contour level = 0.0046305 |
| 51633 | | |
| 51634 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) relative to |
| 51635 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 51636 | | Matrix rotation and translation |
| 51637 | | 0.99063502 0.02023016 -0.13502960 -48.18174625 |
| 51638 | | 0.01721852 0.96255674 0.27053291 -114.44046146 |
| 51639 | | 0.13544657 -0.27032438 0.95319408 -30.22348955 |
| 51640 | | Axis -0.89438466 -0.44727092 -0.00498018 |
| 51641 | | Axis point 0.00000000 -152.62018173 245.77537926 |
| 51642 | | Rotation angle (degrees) 17.59957350 |
| 51643 | | Shift along axis 94.42942384 |
| 51644 | | |
| 51645 | | |
| 51646 | | > fitmap #4 inMap #34 |
| 51647 | | |
| 51648 | | Fit molecule CopB_Q9JIF7.pdb (#4) to map |
| 51649 | | relion_locres_filtered_20240326_GT.mrc (#34) using 4053 atoms |
| 51650 | | average map value = 0.00875, steps = 44 |
| 51651 | | shifted from previous position = 0.00377 |
| 51652 | | rotated from previous position = 0.0117 degrees |
| 51653 | | atoms outside contour = 1354, contour level = 0.0046305 |
| 51654 | | |
| 51655 | | Position of CopB_Q9JIF7.pdb (#4) relative to |
| 51656 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 51657 | | Matrix rotation and translation |
| 51658 | | -0.02335202 -0.73057438 0.68243370 220.10855531 |
| 51659 | | -0.03197812 0.68281640 0.72988983 241.56842405 |
| 51660 | | -0.99921573 -0.00477854 -0.03930754 273.35150591 |
| 51661 | | Axis -0.37414388 0.85641205 0.35577347 |
| 51662 | | Axis point 256.49039751 0.00000000 -59.50264811 |
| 51663 | | Rotation angle (degrees) 100.94820766 |
| 51664 | | Shift along axis 221.78105418 |
| 51665 | | |
| 51666 | | |
| 51667 | | > hide #27.2 models |
| 51668 | | |
| 51669 | | Drag select of 123 residues |
| 51670 | | |
| 51671 | | > select up |
| 51672 | | |
| 51673 | | 1026 atoms, 1036 bonds, 128 residues, 1 model selected |
| 51674 | | |
| 51675 | | > select up |
| 51676 | | |
| 51677 | | 3658 atoms, 3722 bonds, 458 residues, 1 model selected |
| 51678 | | |
| 51679 | | > select down |
| 51680 | | |
| 51681 | | 1026 atoms, 1036 bonds, 128 residues, 1 model selected |
| 51682 | | Drag select of 79 residues |
| 51683 | | |
| 51684 | | > select up |
| 51685 | | |
| 51686 | | 646 atoms, 653 bonds, 81 residues, 1 model selected |
| 51687 | | |
| 51688 | | > delete se |
| 51689 | | |
| 51690 | | Missing or invalid "atoms" argument: invalid atoms specifier |
| 51691 | | |
| 51692 | | > delete sel |
| 51693 | | |
| 51694 | | Drag select of 52 residues |
| 51695 | | |
| 51696 | | > delete sel |
| 51697 | | |
| 51698 | | Drag select of 2 residues |
| 51699 | | |
| 51700 | | > delete sel |
| 51701 | | |
| 51702 | | > show #27.2 models |
| 51703 | | |
| 51704 | | > fitmap #2 inMap #34 |
| 51705 | | |
| 51706 | | Fit molecule CopA-Q8CIE6.pdb (#2) to map |
| 51707 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2593 atoms |
| 51708 | | average map value = 0.008274, steps = 80 |
| 51709 | | shifted from previous position = 1.58 |
| 51710 | | rotated from previous position = 22.4 degrees |
| 51711 | | atoms outside contour = 777, contour level = 0.0046305 |
| 51712 | | |
| 51713 | | Position of CopA-Q8CIE6.pdb (#2) relative to |
| 51714 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 51715 | | Matrix rotation and translation |
| 51716 | | -0.26641990 0.73256583 -0.62639264 199.66098996 |
| 51717 | | 0.08848925 -0.62854670 -0.77272162 281.92857678 |
| 51718 | | -0.95978648 -0.26129744 0.10263314 268.24975358 |
| 51719 | | Axis 0.57629484 0.37568257 -0.72577329 |
| 51720 | | Axis point 250.18950057 180.64614574 0.00000000 |
| 51721 | | Rotation angle (degrees) 153.65868773 |
| 51722 | | Shift along axis 26.29074612 |
| 51723 | | |
| 51724 | | |
| 51725 | | > show #!34 models |
| 51726 | | |
| 51727 | | > hide #!34 models |
| 51728 | | |
| 51729 | | > show #!1 models |
| 51730 | | |
| 51731 | | > hide #!2 models |
| 51732 | | |
| 51733 | | > show #!2 models |
| 51734 | | |
| 51735 | | > hide #!2 models |
| 51736 | | |
| 51737 | | > show #!2 models |
| 51738 | | |
| 51739 | | > hide #!2 models |
| 51740 | | |
| 51741 | | > show #!2 models |
| 51742 | | |
| 51743 | | > fitmap #2 inMap #34 |
| 51744 | | |
| 51745 | | Fit molecule CopA-Q8CIE6.pdb (#2) to map |
| 51746 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2593 atoms |
| 51747 | | average map value = 0.008274, steps = 104 |
| 51748 | | shifted from previous position = 0.0138 |
| 51749 | | rotated from previous position = 0.0479 degrees |
| 51750 | | atoms outside contour = 775, contour level = 0.0046305 |
| 51751 | | |
| 51752 | | Position of CopA-Q8CIE6.pdb (#2) relative to |
| 51753 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 51754 | | Matrix rotation and translation |
| 51755 | | -0.26623863 0.73210066 -0.62701325 199.63781715 |
| 51756 | | 0.08894234 -0.62905756 -0.77225375 281.92254246 |
| 51757 | | -0.95979490 -0.26137180 0.10236468 268.25573305 |
| 51758 | | Axis 0.57646911 0.37550425 -0.72572717 |
| 51759 | | Axis point 250.15657378 180.66177451 0.00000000 |
| 51760 | | Rotation angle (degrees) 153.69732633 |
| 51761 | | Shift along axis 26.26767435 |
| 51762 | | |
| 51763 | | |
| 51764 | | > fitmap #1 inMap #34 |
| 51765 | | |
| 51766 | | Fit molecule CopA-F8WHL2_E320-V651.pdb (#1) to map |
| 51767 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2653 atoms |
| 51768 | | average map value = 0.008168, steps = 104 |
| 51769 | | shifted from previous position = 0.00499 |
| 51770 | | rotated from previous position = 0.0484 degrees |
| 51771 | | atoms outside contour = 820, contour level = 0.0046305 |
| 51772 | | |
| 51773 | | Position of CopA-F8WHL2_E320-V651.pdb (#1) relative to |
| 51774 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 51775 | | Matrix rotation and translation |
| 51776 | | 0.76783420 0.57630098 0.27983535 208.92325977 |
| 51777 | | -0.11086061 0.54973428 -0.82795057 282.31302208 |
| 51778 | | -0.63098381 0.60470604 0.48599386 267.47771771 |
| 51779 | | Axis 0.78224350 0.49731552 -0.37519646 |
| 51780 | | Axis point 0.00000000 -261.66507065 361.06339025 |
| 51781 | | Rotation angle (degrees) 66.31042451 |
| 51782 | | Shift along axis 203.47081525 |
| 51783 | | |
| 51784 | | |
| 51785 | | > fitmap #1 inMap #34 |
| 51786 | | |
| 51787 | | Fit molecule CopA-F8WHL2_E320-V651.pdb (#1) to map |
| 51788 | | relion_locres_filtered_20240326_GT.mrc (#34) using 2653 atoms |
| 51789 | | average map value = 0.008168, steps = 104 |
| 51790 | | shifted from previous position = 0.0303 |
| 51791 | | rotated from previous position = 0.0451 degrees |
| 51792 | | atoms outside contour = 822, contour level = 0.0046305 |
| 51793 | | |
| 51794 | | Position of CopA-F8WHL2_E320-V651.pdb (#1) relative to |
| 51795 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 51796 | | Matrix rotation and translation |
| 51797 | | 0.76755968 0.57631068 0.28056752 208.92584722 |
| 51798 | | -0.11036621 0.55000896 -0.82783419 282.29363072 |
| 51799 | | -0.63140433 0.60444697 0.48576993 267.45684961 |
| 51800 | | Axis 0.78199659 0.49791822 -0.37491171 |
| 51801 | | Axis point 0.00000000 -261.83279019 360.82969852 |
| 51802 | | Rotation angle (degrees) 66.31742467 |
| 51803 | | Shift along axis 203.66573518 |
| 51804 | | |
| 51805 | | |
| 51806 | | > hide #!2 models |
| 51807 | | |
| 51808 | | > rename #2 CopA-Q8CIE6_E320-V642.pdb |
| 51809 | | |
| 51810 | | > show #!2 models |
| 51811 | | |
| 51812 | | > show #!34 models |
| 51813 | | |
| 51814 | | > hide #!34 models |
| 51815 | | |
| 51816 | | > show #!34 models |
| 51817 | | |
| 51818 | | > hide #!1 models |
| 51819 | | |
| 51820 | | > close #1 |
| 51821 | | |
| 51822 | | > hide #!2 models |
| 51823 | | |
| 51824 | | > show #!2 models |
| 51825 | | |
| 51826 | | > hide #!34 models |
| 51827 | | |
| 51828 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 51829 | | > dataset/Structure files/relion_locres_filtered_20240326_GT.mrc" |
| 51830 | | |
| 51831 | | Opened relion_locres_filtered_20240326_GT.mrc as #1, grid size 292,292,292, |
| 51832 | | pixel 1.71, shown at level 0.00473, step 2, values float32 |
| 51833 | | |
| 51834 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 51835 | | QTBUG which explains how to reproduce. |
| 51836 | | |
| 51837 | | > volume #1 step 1 |
| 51838 | | |
| 51839 | | > color #1 #b2b2b2b8 models |
| 51840 | | |
| 51841 | | > color #1 #b2b2b2a5 models |
| 51842 | | |
| 51843 | | > color #1 #b2b2b2a6 models |
| 51844 | | |
| 51845 | | > select add #1 |
| 51846 | | |
| 51847 | | 2 models selected |
| 51848 | | |
| 51849 | | > show #!34 models |
| 51850 | | |
| 51851 | | > select #1 |
| 51852 | | |
| 51853 | | 2 models selected |
| 51854 | | |
| 51855 | | > ui mousemode right "translate selected models" |
| 51856 | | |
| 51857 | | > view matrix models #1,1,0,0,65.367,0,1,0,76.181,0,0,1,75.337 |
| 51858 | | |
| 51859 | | > fitmap #1 inMap #34 |
| 51860 | | |
| 51861 | | Fit map relion_locres_filtered_20240326_GT.mrc in map |
| 51862 | | relion_locres_filtered_20240326_GT.mrc using 247907 points |
| 51863 | | correlation = 1, correlation about mean = 1, overlap = 26.95 |
| 51864 | | steps = 128, shift = 2.55, angle = 0.976 degrees |
| 51865 | | |
| 51866 | | Position of relion_locres_filtered_20240326_GT.mrc (#1) relative to |
| 51867 | | relion_locres_filtered_20240326_GT.mrc (#34) coordinates: |
| 51868 | | Matrix rotation and translation |
| 51869 | | 0.99999999 -0.00012506 -0.00008620 0.05725254 |
| 51870 | | 0.00012506 0.99999999 -0.00002205 -0.01636628 |
| 51871 | | 0.00008620 0.00002204 1.00000000 -0.02226246 |
| 51872 | | Axis 0.14360813 -0.56161595 0.81484000 |
| 51873 | | Axis point 134.16098000 458.61542456 0.00000000 |
| 51874 | | Rotation angle (degrees) 0.00879372 |
| 51875 | | Shift along axis -0.00072685 |
| 51876 | | |
| 51877 | | |
| 51878 | | > select subtract #1 |
| 51879 | | |
| 51880 | | Nothing selected |
| 51881 | | |
| 51882 | | > hide #!1 models |
| 51883 | | |
| 51884 | | > show #!1 models |
| 51885 | | |
| 51886 | | > hide #!1 models |
| 51887 | | |
| 51888 | | > show #!1 models |
| 51889 | | |
| 51890 | | > hide #!34 models |
| 51891 | | |
| 51892 | | > close #33 |
| 51893 | | |
| 51894 | | > close #34 |
| 51895 | | |
| 51896 | | > fitmap #2 inMap #1 |
| 51897 | | |
| 51898 | | Fit molecule CopA-Q8CIE6_E320-V642.pdb (#2) to map |
| 51899 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2593 atoms |
| 51900 | | average map value = 0.008275, steps = 80 |
| 51901 | | shifted from previous position = 0.0314 |
| 51902 | | rotated from previous position = 0.0382 degrees |
| 51903 | | atoms outside contour = 799, contour level = 0.0047281 |
| 51904 | | |
| 51905 | | Position of CopA-Q8CIE6_E320-V642.pdb (#2) relative to |
| 51906 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 51907 | | Matrix rotation and translation |
| 51908 | | -0.26596303 0.73243454 -0.62674022 199.65991761 |
| 51909 | | 0.08887658 -0.62875650 -0.77250645 281.94914037 |
| 51910 | | -0.95987740 -0.26116068 0.10212971 268.25628469 |
| 51911 | | Axis 0.57654299 0.37561258 -0.72561241 |
| 51912 | | Axis point 250.24124687 180.68157744 0.00000000 |
| 51913 | | Rotation angle (degrees) 153.67524455 |
| 51914 | | Shift along axis 26.36608210 |
| 51915 | | |
| 51916 | | |
| 51917 | | > fitmap #2 inMap #1 |
| 51918 | | |
| 51919 | | Fit molecule CopA-Q8CIE6_E320-V642.pdb (#2) to map |
| 51920 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2593 atoms |
| 51921 | | average map value = 0.008274, steps = 76 |
| 51922 | | shifted from previous position = 0.0239 |
| 51923 | | rotated from previous position = 0.0376 degrees |
| 51924 | | atoms outside contour = 796, contour level = 0.0047281 |
| 51925 | | |
| 51926 | | Position of CopA-Q8CIE6_E320-V642.pdb (#2) relative to |
| 51927 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 51928 | | Matrix rotation and translation |
| 51929 | | -0.26646975 0.73245553 -0.62650042 199.65898109 |
| 51930 | | 0.08848498 -0.62866718 -0.77262409 281.93091751 |
| 51931 | | -0.95977304 -0.26131682 0.10270947 268.25264116 |
| 51932 | | Axis 0.57628640 0.37562634 -0.72580910 |
| 51933 | | Axis point 250.17259609 180.64036100 0.00000000 |
| 51934 | | Rotation angle (degrees) 153.66475727 |
| 51935 | | Shift along axis 26.26122582 |
| 51936 | | |
| 51937 | | |
| 51938 | | > fitmap #27.2 inMap #1 |
| 51939 | | |
| 51940 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) to map |
| 51941 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1374 atoms |
| 51942 | | average map value = 0.009228, steps = 48 |
| 51943 | | shifted from previous position = 0.00494 |
| 51944 | | rotated from previous position = 0.0217 degrees |
| 51945 | | atoms outside contour = 522, contour level = 0.0047281 |
| 51946 | | |
| 51947 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) relative to |
| 51948 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 51949 | | Matrix rotation and translation |
| 51950 | | 0.99064341 0.02019889 -0.13497277 -48.22271731 |
| 51951 | | 0.01718831 0.96264614 0.27021654 -114.37202644 |
| 51952 | | 0.13538909 -0.27000818 0.95329186 -30.26466585 |
| 51953 | | Axis -0.89425082 -0.44753841 -0.00498351 |
| 51954 | | Axis point 0.00000000 -152.84510082 245.68531982 |
| 51955 | | Rotation angle (degrees) 17.58103461 |
| 51956 | | Shift along axis 94.45990387 |
| 51957 | | |
| 51958 | | |
| 51959 | | > show #!30 models |
| 51960 | | |
| 51961 | | > fitmap #27.2 inMap #1 |
| 51962 | | |
| 51963 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) to map |
| 51964 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1374 atoms |
| 51965 | | average map value = 0.009229, steps = 48 |
| 51966 | | shifted from previous position = 0.00899 |
| 51967 | | rotated from previous position = 0.0407 degrees |
| 51968 | | atoms outside contour = 520, contour level = 0.0047281 |
| 51969 | | |
| 51970 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) relative to |
| 51971 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 51972 | | Matrix rotation and translation |
| 51973 | | 0.99072816 0.02017173 -0.13435328 -48.32702490 |
| 51974 | | 0.01709208 0.96255277 0.27055504 -114.41852065 |
| 51975 | | 0.13477969 -0.27034287 0.95328336 -30.20567122 |
| 51976 | | Axis -0.89528515 -0.44546438 -0.00509740 |
| 51977 | | Axis point -0.00000000 -152.52705056 246.38057257 |
| 51978 | | Rotation angle (degrees) 17.58265741 |
| 51979 | | Shift along axis 94.38981318 |
| 51980 | | |
| 51981 | | |
| 51982 | | > color #2 #0024ffff |
| 51983 | | |
| 51984 | | > hide #!1 models |
| 51985 | | |
| 51986 | | > hide #!2 models |
| 51987 | | |
| 51988 | | > show #!2 models |
| 51989 | | |
| 51990 | | > hide #!2 models |
| 51991 | | |
| 51992 | | > show #!2 models |
| 51993 | | |
| 51994 | | > hide #27.2 models |
| 51995 | | |
| 51996 | | > show #27.2 models |
| 51997 | | |
| 51998 | | > hide #!30 models |
| 51999 | | |
| 52000 | | > show #!30 models |
| 52001 | | |
| 52002 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 52003 | | > dataset/Chimera sessions/20240709_leaf_fitting_v38_labelled.cxs" |
| 52004 | | |
| 52005 | | > hide #!30 models |
| 52006 | | |
| 52007 | | > hide #27.2 models |
| 52008 | | |
| 52009 | | > hide #!2 models |
| 52010 | | |
| 52011 | | > show #27.1 models |
| 52012 | | |
| 52013 | | > show #!1 models |
| 52014 | | |
| 52015 | | > fitmap #27.1 inMap #1 |
| 52016 | | |
| 52017 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 52018 | | relion_locres_filtered_20240326_GT.mrc (#1) using 6538 atoms |
| 52019 | | average map value = 0.009129, steps = 48 |
| 52020 | | shifted from previous position = 0.00683 |
| 52021 | | rotated from previous position = 0.0266 degrees |
| 52022 | | atoms outside contour = 2197, contour level = 0.0047281 |
| 52023 | | |
| 52024 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to |
| 52025 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 52026 | | Matrix rotation and translation |
| 52027 | | 0.99555627 0.00362167 0.09409890 -80.58908006 |
| 52028 | | -0.00513584 0.99986113 0.01585408 -75.38043922 |
| 52029 | | -0.09402842 -0.01626690 0.99543661 -68.59564412 |
| 52030 | | Axis -0.16812812 0.98469881 -0.04583865 |
| 52031 | | Axis point -802.28218112 0.00000000 921.33841380 |
| 52032 | | Rotation angle (degrees) 5.48155549 |
| 52033 | | Shift along axis -57.53340625 |
| 52034 | | |
| 52035 | | |
| 52036 | | > fitmap #27.1 inMap #1 |
| 52037 | | |
| 52038 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 52039 | | relion_locres_filtered_20240326_GT.mrc (#1) using 6538 atoms |
| 52040 | | average map value = 0.009129, steps = 44 |
| 52041 | | shifted from previous position = 0.0323 |
| 52042 | | rotated from previous position = 0.0101 degrees |
| 52043 | | atoms outside contour = 2198, contour level = 0.0047281 |
| 52044 | | |
| 52045 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to |
| 52046 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 52047 | | Matrix rotation and translation |
| 52048 | | 0.99557143 0.00359514 0.09393932 -80.56899965 |
| 52049 | | -0.00511342 0.99986009 0.01592667 -75.42008740 |
| 52050 | | -0.09386892 -0.01633649 0.99545052 -68.57856091 |
| 52051 | | Axis -0.16913120 0.98453568 -0.04565237 |
| 52052 | | Axis point -803.29062368 0.00000000 923.31930146 |
| 52053 | | Rotation angle (degrees) 5.47313917 |
| 52054 | | Shift along axis -57.49626144 |
| 52055 | | |
| 52056 | | |
| 52057 | | > fitmap #27.1 inMap #1 |
| 52058 | | |
| 52059 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 52060 | | relion_locres_filtered_20240326_GT.mrc (#1) using 6538 atoms |
| 52061 | | average map value = 0.009129, steps = 44 |
| 52062 | | shifted from previous position = 0.0303 |
| 52063 | | rotated from previous position = 0.0146 degrees |
| 52064 | | atoms outside contour = 2193, contour level = 0.0047281 |
| 52065 | | |
| 52066 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to |
| 52067 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 52068 | | Matrix rotation and translation |
| 52069 | | 0.99555366 0.00344087 0.09413328 -80.57178421 |
| 52070 | | -0.00495767 0.99986155 0.01588429 -75.39610791 |
| 52071 | | -0.09406559 -0.01628034 0.99543288 -68.59713070 |
| 52072 | | Axis -0.16830226 0.98475537 -0.04394559 |
| 52073 | | Axis point -800.91827714 0.00000000 921.21427079 |
| 52074 | | Rotation angle (degrees) 5.48333046 |
| 52075 | | Shift along axis -57.67176744 |
| 52076 | | |
| 52077 | | |
| 52078 | | > show #!3 models |
| 52079 | | |
| 52080 | | > hide #!1 models |
| 52081 | | |
| 52082 | | > show #!7 models |
| 52083 | | |
| 52084 | | > hide #!3 models |
| 52085 | | |
| 52086 | | > show #!3 models |
| 52087 | | |
| 52088 | | > hide #!3 models |
| 52089 | | |
| 52090 | | > show #!3 models |
| 52091 | | |
| 52092 | | > hide #!3 models |
| 52093 | | |
| 52094 | | > show #!3 models |
| 52095 | | |
| 52096 | | > hide #!3 models |
| 52097 | | |
| 52098 | | > show #!3 models |
| 52099 | | |
| 52100 | | > hide #!7 models |
| 52101 | | |
| 52102 | | > show #!7 models |
| 52103 | | |
| 52104 | | > fitmap #3 inMap #1 |
| 52105 | | |
| 52106 | | Fit molecule CopBprime_O55029_solenoid.pdb (#3) to map |
| 52107 | | relion_locres_filtered_20240326_GT.mrc (#1) using 4034 atoms |
| 52108 | | average map value = 0.009675, steps = 60 |
| 52109 | | shifted from previous position = 0.0141 |
| 52110 | | rotated from previous position = 0.0255 degrees |
| 52111 | | atoms outside contour = 1482, contour level = 0.0047281 |
| 52112 | | |
| 52113 | | Position of CopBprime_O55029_solenoid.pdb (#3) relative to |
| 52114 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 52115 | | Matrix rotation and translation |
| 52116 | | -0.09015386 -0.26641133 -0.95963393 236.89212744 |
| 52117 | | 0.03176550 -0.96383663 0.26459383 213.37817753 |
| 52118 | | -0.99542113 -0.00662910 0.09535628 277.14045439 |
| 52119 | | Axis -0.67024420 0.08843708 0.73685249 |
| 52120 | | Axis point 230.08374453 109.47948044 0.00000000 |
| 52121 | | Rotation angle (degrees) 168.32667230 |
| 52122 | | Shift along axis 64.30660495 |
| 52123 | | |
| 52124 | | |
| 52125 | | > fitmap #3 inMap #1 |
| 52126 | | |
| 52127 | | Fit molecule CopBprime_O55029_solenoid.pdb (#3) to map |
| 52128 | | relion_locres_filtered_20240326_GT.mrc (#1) using 4034 atoms |
| 52129 | | average map value = 0.009675, steps = 60 |
| 52130 | | shifted from previous position = 0.0282 |
| 52131 | | rotated from previous position = 0.0175 degrees |
| 52132 | | atoms outside contour = 1480, contour level = 0.0047281 |
| 52133 | | |
| 52134 | | Position of CopBprime_O55029_solenoid.pdb (#3) relative to |
| 52135 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 52136 | | Matrix rotation and translation |
| 52137 | | -0.09041325 -0.26644336 -0.95960064 236.86593363 |
| 52138 | | 0.03161617 -0.96382925 0.26463862 213.37297517 |
| 52139 | | -0.99540236 -0.00641206 0.09556685 277.11110769 |
| 52140 | | Axis -0.67015073 0.08851685 0.73692793 |
| 52141 | | Axis point 230.03664950 109.45387438 0.00000000 |
| 52142 | | Rotation angle (degrees) 168.33254007 |
| 52143 | | Shift along axis 64.36213991 |
| 52144 | | |
| 52145 | | |
| 52146 | | > fitmap #7 inMap #1 |
| 52147 | | |
| 52148 | | Fit molecule CopBprime_O55029_beta_props.pdb (#7) to map |
| 52149 | | relion_locres_filtered_20240326_GT.mrc (#1) using 4686 atoms |
| 52150 | | average map value = 0.009331, steps = 48 |
| 52151 | | shifted from previous position = 0.0253 |
| 52152 | | rotated from previous position = 0.0467 degrees |
| 52153 | | atoms outside contour = 1384, contour level = 0.0047281 |
| 52154 | | |
| 52155 | | Position of CopBprime_O55029_beta_props.pdb (#7) relative to |
| 52156 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 52157 | | Matrix rotation and translation |
| 52158 | | -0.18358574 -0.18831682 -0.96479689 236.87476151 |
| 52159 | | 0.00701091 -0.98170427 0.19028287 212.90846072 |
| 52160 | | -0.98297870 0.02816912 0.18154718 275.48584443 |
| 52161 | | Axis -0.63701813 0.07144452 0.76753084 |
| 52162 | | Axis point 224.12322365 105.49859907 0.00000000 |
| 52163 | | Rotation angle (degrees) 172.68962442 |
| 52164 | | Shift along axis 75.76150644 |
| 52165 | | |
| 52166 | | |
| 52167 | | > fitmap #7 inMap #1 |
| 52168 | | |
| 52169 | | Fit molecule CopBprime_O55029_beta_props.pdb (#7) to map |
| 52170 | | relion_locres_filtered_20240326_GT.mrc (#1) using 4686 atoms |
| 52171 | | average map value = 0.009331, steps = 44 |
| 52172 | | shifted from previous position = 0.00835 |
| 52173 | | rotated from previous position = 0.0341 degrees |
| 52174 | | atoms outside contour = 1384, contour level = 0.0047281 |
| 52175 | | |
| 52176 | | Position of CopBprime_O55029_beta_props.pdb (#7) relative to |
| 52177 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 52178 | | Matrix rotation and translation |
| 52179 | | -0.18347865 -0.18860756 -0.96476047 236.87355158 |
| 52180 | | 0.00656557 -0.98163461 0.19065775 212.91058430 |
| 52181 | | -0.98300177 0.02864742 0.18134731 275.47613721 |
| 52182 | | Axis -0.63706303 0.07172910 0.76746702 |
| 52183 | | Axis point 224.14249023 105.44125947 0.00000000 |
| 52184 | | Rotation angle (degrees) 172.69483148 |
| 52185 | | Shift along axis 75.78735231 |
| 52186 | | |
| 52187 | | |
| 52188 | | > fitmap #27.1 inMap #1 |
| 52189 | | |
| 52190 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 52191 | | relion_locres_filtered_20240326_GT.mrc (#1) using 6538 atoms |
| 52192 | | average map value = 0.009129, steps = 44 |
| 52193 | | shifted from previous position = 0.0113 |
| 52194 | | rotated from previous position = 0.014 degrees |
| 52195 | | atoms outside contour = 2194, contour level = 0.0047281 |
| 52196 | | |
| 52197 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to |
| 52198 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 52199 | | Matrix rotation and translation |
| 52200 | | 0.99555672 0.00366599 0.09409244 -80.59191202 |
| 52201 | | -0.00517297 0.99986215 0.01577705 -75.36752085 |
| 52202 | | -0.09402163 -0.01619369 0.99543844 -68.60347468 |
| 52203 | | Axis -0.16737196 0.98480729 -0.04627338 |
| 52204 | | Axis point -802.66772468 0.00000000 921.00087225 |
| 52205 | | Rotation angle (degrees) 5.48056245 |
| 52206 | | Shift along axis -57.55914293 |
| 52207 | | |
| 52208 | | |
| 52209 | | > fitmap #27.1 inMap #1 |
| 52210 | | |
| 52211 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 52212 | | relion_locres_filtered_20240326_GT.mrc (#1) using 6538 atoms |
| 52213 | | average map value = 0.009129, steps = 40 |
| 52214 | | shifted from previous position = 0.032 |
| 52215 | | rotated from previous position = 0.0219 degrees |
| 52216 | | atoms outside contour = 2192, contour level = 0.0047281 |
| 52217 | | |
| 52218 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to |
| 52219 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 52220 | | Matrix rotation and translation |
| 52221 | | 0.99555535 0.00345103 0.09411503 -80.58052940 |
| 52222 | | -0.00498896 0.99985777 0.01611059 -75.45310217 |
| 52223 | | -0.09404605 -0.01650852 0.99543097 -68.56033750 |
| 52224 | | Axis -0.17064313 0.98434316 -0.04415287 |
| 52225 | | Axis point -800.82402146 0.00000000 922.61688892 |
| 52226 | | Rotation angle (degrees) 5.48452907 |
| 52227 | | Shift along axis -57.49409541 |
| 52228 | | |
| 52229 | | |
| 52230 | | > hide #27.1 models |
| 52231 | | |
| 52232 | | > hide #!7 models |
| 52233 | | |
| 52234 | | > hide #!3 models |
| 52235 | | |
| 52236 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 52237 | | > dataset/Structure files/alphafold/CopA-Q8CIE6.pdb" |
| 52238 | | |
| 52239 | | CopA-Q8CIE6.pdb title: |
| 52240 | | Alphafold monomer V2.0 prediction for coatomer subunit α (Q8CIE6) [more |
| 52241 | | info...] |
| 52242 | | |
| 52243 | | Chain information for CopA-Q8CIE6.pdb #13 |
| 52244 | | --- |
| 52245 | | Chain | Description | UniProt |
| 52246 | | A | coatomer subunit α | COPA_MOUSE 1-1224 |
| 52247 | | |
| 52248 | | |
| 52249 | | > color #13 #0038ffff |
| 52250 | | |
| 52251 | | > ui tool show Matchmaker |
| 52252 | | |
| 52253 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 52254 | | QTBUG which explains how to reproduce. |
| 52255 | | |
| 52256 | | > matchmaker #13 to #2 |
| 52257 | | |
| 52258 | | Parameters |
| 52259 | | --- |
| 52260 | | Chain pairing | bb |
| 52261 | | Alignment algorithm | Needleman-Wunsch |
| 52262 | | Similarity matrix | BLOSUM-62 |
| 52263 | | SS fraction | 0.3 |
| 52264 | | Gap open (HH/SS/other) | 18/18/6 |
| 52265 | | Gap extend | 1 |
| 52266 | | SS matrix | | | H | S | O |
| 52267 | | ---|---|---|--- |
| 52268 | | H | 6 | -9 | -6 |
| 52269 | | S | | 6 | -6 |
| 52270 | | O | | | 4 |
| 52271 | | Iteration cutoff | 2 |
| 52272 | | |
| 52273 | | Matchmaker CopA-Q8CIE6_E320-V642.pdb, chain A (#2) with CopA-Q8CIE6.pdb, chain |
| 52274 | | A (#13), sequence alignment score = 5036.7 |
| 52275 | | RMSD between 324 pruned atom pairs is 0.000 angstroms; (across all 324 pairs: |
| 52276 | | 0.000) |
| 52277 | | |
| 52278 | | |
| 52279 | | > combine #13 |
| 52280 | | |
| 52281 | | [Repeated 1 time(s)] |
| 52282 | | |
| 52283 | | > hide #15 models |
| 52284 | | |
| 52285 | | > hide #14 models |
| 52286 | | |
| 52287 | | > show #!2 models |
| 52288 | | |
| 52289 | | > hide #!2 models |
| 52290 | | |
| 52291 | | > show #!2 models |
| 52292 | | |
| 52293 | | > hide #!2 models |
| 52294 | | |
| 52295 | | > hide #13 models |
| 52296 | | |
| 52297 | | > show #13 models |
| 52298 | | |
| 52299 | | > show #!1 models |
| 52300 | | |
| 52301 | | > hide #!1 models |
| 52302 | | |
| 52303 | | > show #!1 models |
| 52304 | | |
| 52305 | | > hide #!1 models |
| 52306 | | |
| 52307 | | > ui mousemode right select |
| 52308 | | |
| 52309 | | Drag select of 311 residues |
| 52310 | | |
| 52311 | | > select up |
| 52312 | | |
| 52313 | | 3114 atoms, 3179 bonds, 399 residues, 1 model selected |
| 52314 | | |
| 52315 | | > delete sel |
| 52316 | | |
| 52317 | | > show #!1 models |
| 52318 | | |
| 52319 | | > hide #!1 models |
| 52320 | | |
| 52321 | | > show #!1 models |
| 52322 | | |
| 52323 | | > hide #!1 models |
| 52324 | | |
| 52325 | | Drag select of 297 residues |
| 52326 | | |
| 52327 | | > select up |
| 52328 | | |
| 52329 | | 2613 atoms, 2687 bonds, 321 residues, 1 model selected |
| 52330 | | |
| 52331 | | > delete sel |
| 52332 | | |
| 52333 | | Drag select of 3 residues |
| 52334 | | |
| 52335 | | > select up |
| 52336 | | |
| 52337 | | 37 atoms, 37 bonds, 4 residues, 1 model selected |
| 52338 | | |
| 52339 | | > delete sel |
| 52340 | | |
| 52341 | | > fitmap #13 inMap #1 |
| 52342 | | |
| 52343 | | Fit molecule CopA-Q8CIE6.pdb (#13) to map |
| 52344 | | relion_locres_filtered_20240326_GT.mrc (#1) using 3978 atoms |
| 52345 | | average map value = 0.007481, steps = 228 |
| 52346 | | shifted from previous position = 5.68 |
| 52347 | | rotated from previous position = 21.7 degrees |
| 52348 | | atoms outside contour = 1678, contour level = 0.0047281 |
| 52349 | | |
| 52350 | | Position of CopA-Q8CIE6.pdb (#13) relative to |
| 52351 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 52352 | | Matrix rotation and translation |
| 52353 | | -0.09946351 0.80564030 -0.58399547 199.48908893 |
| 52354 | | -0.24922291 -0.58836882 -0.76922693 283.37506930 |
| 52355 | | -0.96332494 0.06903504 0.25930525 274.83807073 |
| 52356 | | Axis 0.59886391 0.27099730 -0.75360631 |
| 52357 | | Axis point 286.50297224 135.30530391 0.00000000 |
| 52358 | | Rotation angle (degrees) 135.58287597 |
| 52359 | | Shift along axis -10.85900981 |
| 52360 | | |
| 52361 | | |
| 52362 | | > show #!1 models |
| 52363 | | |
| 52364 | | > show #!3 models |
| 52365 | | |
| 52366 | | > hide #!3 models |
| 52367 | | |
| 52368 | | > hide #!1 models |
| 52369 | | |
| 52370 | | > show #!1 models |
| 52371 | | |
| 52372 | | > hide #!1 models |
| 52373 | | |
| 52374 | | > show #!2 models |
| 52375 | | |
| 52376 | | > show #!1 models |
| 52377 | | |
| 52378 | | > hide #!13 models |
| 52379 | | |
| 52380 | | > show #!13 models |
| 52381 | | |
| 52382 | | > hide #!13 models |
| 52383 | | |
| 52384 | | > hide #!1 models |
| 52385 | | |
| 52386 | | > hide #!2 models |
| 52387 | | |
| 52388 | | > show #!13 models |
| 52389 | | |
| 52390 | | Drag select of 204 residues |
| 52391 | | |
| 52392 | | > select up |
| 52393 | | |
| 52394 | | 1878 atoms, 1912 bonds, 233 residues, 1 model selected |
| 52395 | | Drag select of 70 residues |
| 52396 | | Drag select of 226 residues |
| 52397 | | |
| 52398 | | > select up |
| 52399 | | |
| 52400 | | 2021 atoms, 2057 bonds, 254 residues, 1 model selected |
| 52401 | | |
| 52402 | | > select clear |
| 52403 | | |
| 52404 | | Drag select of 254 residues |
| 52405 | | Drag select of 238 residues |
| 52406 | | Drag select of 262 residues |
| 52407 | | |
| 52408 | | > select up |
| 52409 | | |
| 52410 | | 2188 atoms, 2230 bonds, 274 residues, 1 model selected |
| 52411 | | |
| 52412 | | > select down |
| 52413 | | |
| 52414 | | 2088 atoms, 262 residues, 1 model selected |
| 52415 | | Drag select of 71 residues |
| 52416 | | |
| 52417 | | > select clear |
| 52418 | | |
| 52419 | | Drag select of 228 residues |
| 52420 | | |
| 52421 | | > select up |
| 52422 | | |
| 52423 | | 1999 atoms, 2036 bonds, 251 residues, 1 model selected |
| 52424 | | |
| 52425 | | > delete sel |
| 52426 | | |
| 52427 | | Drag select of 15 residues, 1 pseudobonds |
| 52428 | | |
| 52429 | | > delete sel |
| 52430 | | |
| 52431 | | > show #!1 models |
| 52432 | | |
| 52433 | | > fitmap #13 inMap #1 |
| 52434 | | |
| 52435 | | Fit molecule CopA-Q8CIE6.pdb (#13) to map |
| 52436 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1865 atoms |
| 52437 | | average map value = 0.00897, steps = 56 |
| 52438 | | shifted from previous position = 0.674 |
| 52439 | | rotated from previous position = 3.69 degrees |
| 52440 | | atoms outside contour = 684, contour level = 0.0047281 |
| 52441 | | |
| 52442 | | Position of CopA-Q8CIE6.pdb (#13) relative to |
| 52443 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 52444 | | Matrix rotation and translation |
| 52445 | | -0.13654802 0.80145366 -0.58225997 199.09573463 |
| 52446 | | -0.29788921 -0.59378120 -0.74745295 281.94987931 |
| 52447 | | -0.94478392 0.07138574 0.31982404 271.93620355 |
| 52448 | | Axis 0.57749602 0.25567446 -0.77532504 |
| 52449 | | Axis point 278.04684340 128.75122066 0.00000000 |
| 52450 | | Rotation angle (degrees) 134.84995391 |
| 52451 | | Shift along axis -23.77456835 |
| 52452 | | |
| 52453 | | |
| 52454 | | > fitmap #13 inMap #1 |
| 52455 | | |
| 52456 | | Fit molecule CopA-Q8CIE6.pdb (#13) to map |
| 52457 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1865 atoms |
| 52458 | | average map value = 0.00897, steps = 48 |
| 52459 | | shifted from previous position = 0.0041 |
| 52460 | | rotated from previous position = 0.0587 degrees |
| 52461 | | atoms outside contour = 683, contour level = 0.0047281 |
| 52462 | | |
| 52463 | | Position of CopA-Q8CIE6.pdb (#13) relative to |
| 52464 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 52465 | | Matrix rotation and translation |
| 52466 | | -0.13748732 0.80118616 -0.58240705 199.09730314 |
| 52467 | | -0.29755557 -0.59424011 -0.74722110 281.94423583 |
| 52468 | | -0.94475284 0.07056504 0.32009788 271.93191939 |
| 52469 | | Axis 0.57720938 0.25575071 -0.77551331 |
| 52470 | | Axis point 277.87079304 128.81627672 0.00000000 |
| 52471 | | Rotation angle (degrees) 134.89540566 |
| 52472 | | Shift along axis -23.85855294 |
| 52473 | | |
| 52474 | | |
| 52475 | | > hide #!1 models |
| 52476 | | |
| 52477 | | Drag select of 12 residues |
| 52478 | | |
| 52479 | | > select up |
| 52480 | | |
| 52481 | | 372 atoms, 384 bonds, 48 residues, 1 model selected |
| 52482 | | |
| 52483 | | > delete sel |
| 52484 | | |
| 52485 | | > show #!1 models |
| 52486 | | |
| 52487 | | > fitmap #13 inMap #1 |
| 52488 | | |
| 52489 | | Fit molecule CopA-Q8CIE6.pdb (#13) to map |
| 52490 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1493 atoms |
| 52491 | | average map value = 0.009858, steps = 64 |
| 52492 | | shifted from previous position = 0.412 |
| 52493 | | rotated from previous position = 2.61 degrees |
| 52494 | | atoms outside contour = 506, contour level = 0.0047281 |
| 52495 | | |
| 52496 | | Position of CopA-Q8CIE6.pdb (#13) relative to |
| 52497 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 52498 | | Matrix rotation and translation |
| 52499 | | -0.09655165 0.81642437 -0.56932331 198.81758171 |
| 52500 | | -0.30234192 -0.56902489 -0.76472220 282.29081333 |
| 52501 | | -0.94829697 0.09829511 0.30177960 272.22690948 |
| 52502 | | Axis 0.58993851 0.25905756 -0.76476254 |
| 52503 | | Axis point 285.98011714 127.74194415 0.00000000 |
| 52504 | | Rotation angle (degrees) 132.99217470 |
| 52505 | | Shift along axis -17.76922692 |
| 52506 | | |
| 52507 | | |
| 52508 | | > rename #13 CopA-Q8CIE6_solenoid.pdb |
| 52509 | | |
| 52510 | | > hide #!1 models |
| 52511 | | |
| 52512 | | > show #!1 models |
| 52513 | | |
| 52514 | | > hide #!13 models |
| 52515 | | |
| 52516 | | > show #!13 models |
| 52517 | | |
| 52518 | | > hide #!1 models |
| 52519 | | |
| 52520 | | > show #14 models |
| 52521 | | |
| 52522 | | > hide #!13 models |
| 52523 | | |
| 52524 | | Drag select of 535 residues |
| 52525 | | |
| 52526 | | > select up |
| 52527 | | |
| 52528 | | 4425 atoms, 4514 bonds, 565 residues, 1 model selected |
| 52529 | | |
| 52530 | | > delete sel |
| 52531 | | |
| 52532 | | Drag select of 2 residues |
| 52533 | | |
| 52534 | | > delete sel |
| 52535 | | |
| 52536 | | > fitmap #14 inMap #1 |
| 52537 | | |
| 52538 | | Fit molecule copy of CopA-Q8CIE6.pdb (#14) to map |
| 52539 | | relion_locres_filtered_20240326_GT.mrc (#1) using 5301 atoms |
| 52540 | | average map value = 0.008461, steps = 68 |
| 52541 | | shifted from previous position = 3.21 |
| 52542 | | rotated from previous position = 8.56 degrees |
| 52543 | | atoms outside contour = 1732, contour level = 0.0047281 |
| 52544 | | |
| 52545 | | Position of copy of CopA-Q8CIE6.pdb (#14) relative to |
| 52546 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 52547 | | Matrix rotation and translation |
| 52548 | | -0.33497523 0.69483088 -0.63639739 200.55601777 |
| 52549 | | 0.21403454 -0.60164836 -0.76955082 281.25327405 |
| 52550 | | -0.91759512 -0.39399149 0.05281949 264.17163778 |
| 52551 | | Axis 0.55905496 0.41858895 -0.71571003 |
| 52552 | | Axis point 235.37583132 196.39849704 0.00000000 |
| 52553 | | Rotation angle (degrees) 160.37347442 |
| 52554 | | Shift along axis 40.78105937 |
| 52555 | | |
| 52556 | | |
| 52557 | | > show #!1 models |
| 52558 | | |
| 52559 | | > hide #!1 models |
| 52560 | | |
| 52561 | | Drag select of 50 residues |
| 52562 | | |
| 52563 | | > select up |
| 52564 | | |
| 52565 | | 487 atoms, 495 bonds, 60 residues, 1 model selected |
| 52566 | | Drag select of 66 residues |
| 52567 | | Drag select of 58 residues |
| 52568 | | |
| 52569 | | > select up |
| 52570 | | |
| 52571 | | 538 atoms, 548 bonds, 66 residues, 1 model selected |
| 52572 | | |
| 52573 | | > delete sel |
| 52574 | | |
| 52575 | | > fitmap #14 inMap #1 |
| 52576 | | |
| 52577 | | Fit molecule copy of CopA-Q8CIE6.pdb (#14) to map |
| 52578 | | relion_locres_filtered_20240326_GT.mrc (#1) using 4763 atoms |
| 52579 | | average map value = 0.008718, steps = 44 |
| 52580 | | shifted from previous position = 0.272 |
| 52581 | | rotated from previous position = 0.784 degrees |
| 52582 | | atoms outside contour = 1499, contour level = 0.0047281 |
| 52583 | | |
| 52584 | | Position of copy of CopA-Q8CIE6.pdb (#14) relative to |
| 52585 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 52586 | | Matrix rotation and translation |
| 52587 | | -0.34429351 0.69720481 -0.62878251 201.11062000 |
| 52588 | | 0.21642490 -0.59275352 -0.77575996 281.02073780 |
| 52589 | | -0.91357662 -0.40317331 0.05318871 263.97597983 |
| 52590 | | Axis 0.55475542 0.42403849 -0.71584760 |
| 52591 | | Axis point 234.64506404 197.20196587 0.00000000 |
| 52592 | | Rotation angle (degrees) 160.37809947 |
| 52593 | | Shift along axis 41.76424549 |
| 52594 | | |
| 52595 | | |
| 52596 | | > show #!1 models |
| 52597 | | |
| 52598 | | > hide #!1 models |
| 52599 | | |
| 52600 | | > show #!30 models |
| 52601 | | |
| 52602 | | > hide #!30 models |
| 52603 | | |
| 52604 | | > show #27.2 models |
| 52605 | | |
| 52606 | | > hide #27.2 models |
| 52607 | | |
| 52608 | | > show #!2 models |
| 52609 | | |
| 52610 | | > hide #!2 models |
| 52611 | | |
| 52612 | | > show #27.2 models |
| 52613 | | |
| 52614 | | > hide #27.2 models |
| 52615 | | |
| 52616 | | > show #!30 models |
| 52617 | | |
| 52618 | | > fitmap #14 inMap #1 |
| 52619 | | |
| 52620 | | Fit molecule copy of CopA-Q8CIE6.pdb (#14) to map |
| 52621 | | relion_locres_filtered_20240326_GT.mrc (#1) using 4763 atoms |
| 52622 | | average map value = 0.008718, steps = 28 |
| 52623 | | shifted from previous position = 0.0214 |
| 52624 | | rotated from previous position = 0.012 degrees |
| 52625 | | atoms outside contour = 1498, contour level = 0.0047281 |
| 52626 | | |
| 52627 | | Position of copy of CopA-Q8CIE6.pdb (#14) relative to |
| 52628 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 52629 | | Matrix rotation and translation |
| 52630 | | -0.34444666 0.69707488 -0.62884267 201.10502206 |
| 52631 | | 0.21646045 -0.59281472 -0.77570329 281.00582538 |
| 52632 | | -0.91351047 -0.40330797 0.05330391 263.96548545 |
| 52633 | | Axis 0.55470027 0.42402602 -0.71589772 |
| 52634 | | Axis point 234.60444415 197.19298857 0.00000000 |
| 52635 | | Rotation angle (degrees) 160.38655922 |
| 52636 | | Shift along axis 41.73450133 |
| 52637 | | |
| 52638 | | |
| 52639 | | > fitmap #14 inMap #1 |
| 52640 | | |
| 52641 | | Fit molecule copy of CopA-Q8CIE6.pdb (#14) to map |
| 52642 | | relion_locres_filtered_20240326_GT.mrc (#1) using 4763 atoms |
| 52643 | | average map value = 0.008718, steps = 40 |
| 52644 | | shifted from previous position = 0.0258 |
| 52645 | | rotated from previous position = 0.0246 degrees |
| 52646 | | atoms outside contour = 1501, contour level = 0.0047281 |
| 52647 | | |
| 52648 | | Position of copy of CopA-Q8CIE6.pdb (#14) relative to |
| 52649 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 52650 | | Matrix rotation and translation |
| 52651 | | -0.34410034 0.69730151 -0.62878101 201.10848078 |
| 52652 | | 0.21633810 -0.59277765 -0.77576574 281.02540295 |
| 52653 | | -0.91366995 -0.40297054 0.05312211 263.97796969 |
| 52654 | | Axis 0.55482862 0.42399832 -0.71581466 |
| 52655 | | Axis point 234.67905251 197.19172890 0.00000000 |
| 52656 | | Rotation angle (degrees) 160.36936225 |
| 52657 | | Shift along axis 41.77574043 |
| 52658 | | |
| 52659 | | |
| 52660 | | > hide #!14 models |
| 52661 | | |
| 52662 | | > show #!14 models |
| 52663 | | |
| 52664 | | > show #!1 models |
| 52665 | | |
| 52666 | | > close #15 |
| 52667 | | |
| 52668 | | > rename #14 CopA-Q8CIE6_beta_props.pdb |
| 52669 | | |
| 52670 | | > show #!13 models |
| 52671 | | |
| 52672 | | > hide #!13 models |
| 52673 | | |
| 52674 | | > hide #!14 models |
| 52675 | | |
| 52676 | | > hide #!30 models |
| 52677 | | |
| 52678 | | > hide #!1 models |
| 52679 | | |
| 52680 | | > show #!4 models |
| 52681 | | |
| 52682 | | > show #32.1 models |
| 52683 | | |
| 52684 | | > hide #32.1 models |
| 52685 | | |
| 52686 | | > show #32.1 models |
| 52687 | | |
| 52688 | | > hide #!4 models |
| 52689 | | |
| 52690 | | > show #!4 models |
| 52691 | | |
| 52692 | | > fitmap #4 inMap #1 |
| 52693 | | |
| 52694 | | Fit molecule CopB_Q9JIF7.pdb (#4) to map |
| 52695 | | relion_locres_filtered_20240326_GT.mrc (#1) using 4053 atoms |
| 52696 | | average map value = 0.00875, steps = 60 |
| 52697 | | shifted from previous position = 0.023 |
| 52698 | | rotated from previous position = 0.0058 degrees |
| 52699 | | atoms outside contour = 1377, contour level = 0.0047281 |
| 52700 | | |
| 52701 | | Position of CopB_Q9JIF7.pdb (#4) relative to |
| 52702 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 52703 | | Matrix rotation and translation |
| 52704 | | -0.02339990 -0.73051856 0.68249182 220.12357711 |
| 52705 | | -0.03191624 0.68287664 0.72983618 241.57823865 |
| 52706 | | -0.99921659 -0.00470448 -0.03929465 273.35256704 |
| 52707 | | Axis -0.37407791 0.85643995 0.35577567 |
| 52708 | | Axis point 256.48319067 0.00000000 -59.50468413 |
| 52709 | | Rotation angle (degrees) 100.94747093 |
| 52710 | | Shift along axis 221.80608061 |
| 52711 | | |
| 52712 | | |
| 52713 | | > fitmap #4 inMap #1 |
| 52714 | | |
| 52715 | | Fit molecule CopB_Q9JIF7.pdb (#4) to map |
| 52716 | | relion_locres_filtered_20240326_GT.mrc (#1) using 4053 atoms |
| 52717 | | average map value = 0.00875, steps = 64 |
| 52718 | | shifted from previous position = 0.00896 |
| 52719 | | rotated from previous position = 0.0162 degrees |
| 52720 | | atoms outside contour = 1374, contour level = 0.0047281 |
| 52721 | | |
| 52722 | | Position of CopB_Q9JIF7.pdb (#4) relative to |
| 52723 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 52724 | | Matrix rotation and translation |
| 52725 | | -0.02354741 -0.73035997 0.68265645 220.12625836 |
| 52726 | | -0.03198603 0.68304660 0.72967406 241.57922012 |
| 52727 | | -0.99921089 -0.00465353 -0.03944530 273.35505958 |
| 52728 | | Axis -0.37397413 0.85653171 0.35566386 |
| 52729 | | Axis point 256.45874274 0.00000000 -59.45008610 |
| 52730 | | Rotation angle (degrees) 100.95121196 |
| 52731 | | Shift along axis 221.82125205 |
| 52732 | | |
| 52733 | | |
| 52734 | | > fitmap #32.1 inMap #1 |
| 52735 | | |
| 52736 | | Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) to map |
| 52737 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2991 atoms |
| 52738 | | average map value = 0.01065, steps = 44 |
| 52739 | | shifted from previous position = 0.0361 |
| 52740 | | rotated from previous position = 0.0316 degrees |
| 52741 | | atoms outside contour = 1091, contour level = 0.0047281 |
| 52742 | | |
| 52743 | | Position of 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) relative to |
| 52744 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 52745 | | Matrix rotation and translation |
| 52746 | | 0.99551010 -0.07940155 0.05152702 253.49799044 |
| 52747 | | 0.06873037 0.98065549 0.18327835 192.94826820 |
| 52748 | | -0.06508284 -0.17891398 0.98170974 287.90534252 |
| 52749 | | Axis -0.88703328 0.28558535 0.36278502 |
| 52750 | | Axis point 0.00000000 1839.78826465 -960.34310326 |
| 52751 | | Rotation angle (degrees) 11.78029424 |
| 52752 | | Shift along axis -65.31021219 |
| 52753 | | |
| 52754 | | |
| 52755 | | > fitmap #32.1 inMap #1 |
| 52756 | | |
| 52757 | | Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) to map |
| 52758 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2991 atoms |
| 52759 | | average map value = 0.01065, steps = 60 |
| 52760 | | shifted from previous position = 0.0121 |
| 52761 | | rotated from previous position = 0.0265 degrees |
| 52762 | | atoms outside contour = 1092, contour level = 0.0047281 |
| 52763 | | |
| 52764 | | Position of 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) relative to |
| 52765 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 52766 | | Matrix rotation and translation |
| 52767 | | 0.99552361 -0.07944603 0.05119636 253.49390279 |
| 52768 | | 0.06881249 0.98059002 0.18359751 192.95535330 |
| 52769 | | -0.06478873 -0.17925271 0.98166740 287.92411424 |
| 52770 | | Axis -0.88766221 0.28374126 0.36269367 |
| 52771 | | Axis point 0.00000000 1837.48799202 -958.46116796 |
| 52772 | | Rotation angle (degrees) 11.79351762 |
| 52773 | | Shift along axis -65.83930804 |
| 52774 | | |
| 52775 | | |
| 52776 | | > fitmap #32.1 inMap #1 |
| 52777 | | |
| 52778 | | Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) to map |
| 52779 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2991 atoms |
| 52780 | | average map value = 0.01065, steps = 76 |
| 52781 | | shifted from previous position = 0.0193 |
| 52782 | | rotated from previous position = 0.025 degrees |
| 52783 | | atoms outside contour = 1088, contour level = 0.0047281 |
| 52784 | | |
| 52785 | | Position of 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) relative to |
| 52786 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 52787 | | Matrix rotation and translation |
| 52788 | | 0.99551654 -0.07955168 0.05116976 253.50960352 |
| 52789 | | 0.06894836 0.98065708 0.18318793 192.96250485 |
| 52790 | | -0.06475290 -0.17883854 0.98174530 287.91044751 |
| 52791 | | Axis -0.88708136 0.28404783 0.36387289 |
| 52792 | | Axis point 0.00000000 1840.79041662 -960.25690300 |
| 52793 | | Rotation angle (degrees) 11.77417540 |
| 52794 | | Shift along axis -65.31025602 |
| 52795 | | |
| 52796 | | |
| 52797 | | > fitmap #32.1 inMap #1 |
| 52798 | | |
| 52799 | | Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) to map |
| 52800 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2991 atoms |
| 52801 | | average map value = 0.01065, steps = 60 |
| 52802 | | shifted from previous position = 0.0129 |
| 52803 | | rotated from previous position = 0.0138 degrees |
| 52804 | | atoms outside contour = 1089, contour level = 0.0047281 |
| 52805 | | |
| 52806 | | Position of 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) relative to |
| 52807 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 52808 | | Matrix rotation and translation |
| 52809 | | 0.99552608 -0.07947362 0.05110542 253.51297695 |
| 52810 | | 0.06886907 0.98062310 0.18339952 192.96033883 |
| 52811 | | -0.06469058 -0.17905942 0.98170915 287.90881591 |
| 52812 | | Axis -0.88750914 0.28353557 0.36322871 |
| 52813 | | Axis point 0.00000000 1839.18692996 -959.39691372 |
| 52814 | | Rotation angle (degrees) 11.78267869 |
| 52815 | | Shift along axis -65.70721611 |
| 52816 | | |
| 52817 | | |
| 52818 | | > fitmap #32.1 inMap #1 |
| 52819 | | |
| 52820 | | Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) to map |
| 52821 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2991 atoms |
| 52822 | | average map value = 0.01065, steps = 60 |
| 52823 | | shifted from previous position = 0.0205 |
| 52824 | | rotated from previous position = 0.0186 degrees |
| 52825 | | atoms outside contour = 1092, contour level = 0.0047281 |
| 52826 | | |
| 52827 | | Position of 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) relative to |
| 52828 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 52829 | | Matrix rotation and translation |
| 52830 | | 0.99552600 -0.07933918 0.05131543 253.49679161 |
| 52831 | | 0.06868605 0.98059953 0.18359410 192.94992631 |
| 52832 | | -0.06488609 -0.17924805 0.98166182 287.91648514 |
| 52833 | | Axis -0.88770813 0.28429178 0.36214978 |
| 52834 | | Axis point 0.00000000 1837.50194689 -958.84713846 |
| 52835 | | Rotation angle (degrees) 11.79263263 |
| 52836 | | Shift along axis -65.90819220 |
| 52837 | | |
| 52838 | | |
| 52839 | | > hide #32.1 models |
| 52840 | | |
| 52841 | | > show #!1 models |
| 52842 | | |
| 52843 | | > hide #!1 models |
| 52844 | | |
| 52845 | | > show #!1 models |
| 52846 | | |
| 52847 | | > hide #!4 models |
| 52848 | | |
| 52849 | | > show #32.1 models |
| 52850 | | |
| 52851 | | > hide #32.1 models |
| 52852 | | |
| 52853 | | > show #!4 models |
| 52854 | | |
| 52855 | | > rename #4 CopB_Q9JIF7_P395-L953.pdb |
| 52856 | | |
| 52857 | | > hide #!4 models |
| 52858 | | |
| 52859 | | > show #!4 models |
| 52860 | | |
| 52861 | | > hide #!1 models |
| 52862 | | |
| 52863 | | > show #!1 models |
| 52864 | | |
| 52865 | | > hide #!1 models |
| 52866 | | |
| 52867 | | > show #!1 models |
| 52868 | | |
| 52869 | | > hide #!4 models |
| 52870 | | |
| 52871 | | > show #!4 models |
| 52872 | | |
| 52873 | | > hide #!4 models |
| 52874 | | |
| 52875 | | > hide #!1 models |
| 52876 | | |
| 52877 | | > show #!3 models |
| 52878 | | |
| 52879 | | > show #!7 models |
| 52880 | | |
| 52881 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 52882 | | > dataset/Structure files/alphafold/CopB_ Q9JIF7.pdb" |
| 52883 | | |
| 52884 | | CopB_ Q9JIF7.pdb title: |
| 52885 | | Alphafold monomer V2.0 prediction for coatomer subunit β (Q9JIF7) [more |
| 52886 | | info...] |
| 52887 | | |
| 52888 | | Chain information for CopB_ Q9JIF7.pdb #15 |
| 52889 | | --- |
| 52890 | | Chain | Description | UniProt |
| 52891 | | A | coatomer subunit β | COPB_MOUSE 1-953 |
| 52892 | | |
| 52893 | | |
| 52894 | | > color #15 #076000ff |
| 52895 | | |
| 52896 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 52897 | | > dataset/Structure files/alphafold/CopB_ Q9JIF7.pdb" |
| 52898 | | |
| 52899 | | CopB_ Q9JIF7.pdb title: |
| 52900 | | Alphafold monomer V2.0 prediction for coatomer subunit β (Q9JIF7) [more |
| 52901 | | info...] |
| 52902 | | |
| 52903 | | Chain information for CopB_ Q9JIF7.pdb #16 |
| 52904 | | --- |
| 52905 | | Chain | Description | UniProt |
| 52906 | | A | coatomer subunit β | COPB_MOUSE 1-953 |
| 52907 | | |
| 52908 | | |
| 52909 | | > color #16 #076000ff |
| 52910 | | |
| 52911 | | > hide #!3 models |
| 52912 | | |
| 52913 | | > hide #!7 models |
| 52914 | | |
| 52915 | | > ui tool show Matchmaker |
| 52916 | | |
| 52917 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 52918 | | QTBUG which explains how to reproduce. |
| 52919 | | |
| 52920 | | > matchmaker #15 to #4 |
| 52921 | | |
| 52922 | | Parameters |
| 52923 | | --- |
| 52924 | | Chain pairing | bb |
| 52925 | | Alignment algorithm | Needleman-Wunsch |
| 52926 | | Similarity matrix | BLOSUM-62 |
| 52927 | | SS fraction | 0.3 |
| 52928 | | Gap open (HH/SS/other) | 18/18/6 |
| 52929 | | Gap extend | 1 |
| 52930 | | SS matrix | | | H | S | O |
| 52931 | | ---|---|---|--- |
| 52932 | | H | 6 | -9 | -6 |
| 52933 | | S | | 6 | -6 |
| 52934 | | O | | | 4 |
| 52935 | | Iteration cutoff | 2 |
| 52936 | | |
| 52937 | | Matchmaker CopB_Q9JIF7_P395-L953.pdb, chain A (#4) with CopB_ Q9JIF7.pdb, |
| 52938 | | chain A (#15), sequence alignment score = 4184.9 |
| 52939 | | RMSD between 418 pruned atom pairs is 0.845 angstroms; (across all 520 pairs: |
| 52940 | | 2.356) |
| 52941 | | |
| 52942 | | |
| 52943 | | > ui tool show Matchmaker |
| 52944 | | |
| 52945 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 52946 | | QTBUG which explains how to reproduce. |
| 52947 | | |
| 52948 | | > matchmaker #16 to #2 |
| 52949 | | |
| 52950 | | Parameters |
| 52951 | | --- |
| 52952 | | Chain pairing | bb |
| 52953 | | Alignment algorithm | Needleman-Wunsch |
| 52954 | | Similarity matrix | BLOSUM-62 |
| 52955 | | SS fraction | 0.3 |
| 52956 | | Gap open (HH/SS/other) | 18/18/6 |
| 52957 | | Gap extend | 1 |
| 52958 | | SS matrix | | | H | S | O |
| 52959 | | ---|---|---|--- |
| 52960 | | H | 6 | -9 | -6 |
| 52961 | | S | | 6 | -6 |
| 52962 | | O | | | 4 |
| 52963 | | Iteration cutoff | 2 |
| 52964 | | |
| 52965 | | Matchmaker CopA-Q8CIE6_E320-V642.pdb, chain A (#2) with CopB_ Q9JIF7.pdb, |
| 52966 | | chain A (#16), sequence alignment score = 5 |
| 52967 | | Fewer than 3 residues aligned; cannot match CopA-Q8CIE6_E320-V642.pdb, chain A |
| 52968 | | with CopB_ Q9JIF7.pdb, chain A |
| 52969 | | |
| 52970 | | > ui tool show Matchmaker |
| 52971 | | |
| 52972 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 52973 | | QTBUG which explains how to reproduce. |
| 52974 | | |
| 52975 | | > matchmaker #16 to #4 |
| 52976 | | |
| 52977 | | Parameters |
| 52978 | | --- |
| 52979 | | Chain pairing | bb |
| 52980 | | Alignment algorithm | Needleman-Wunsch |
| 52981 | | Similarity matrix | BLOSUM-62 |
| 52982 | | SS fraction | 0.3 |
| 52983 | | Gap open (HH/SS/other) | 18/18/6 |
| 52984 | | Gap extend | 1 |
| 52985 | | SS matrix | | | H | S | O |
| 52986 | | ---|---|---|--- |
| 52987 | | H | 6 | -9 | -6 |
| 52988 | | S | | 6 | -6 |
| 52989 | | O | | | 4 |
| 52990 | | Iteration cutoff | 2 |
| 52991 | | |
| 52992 | | Matchmaker CopB_Q9JIF7_P395-L953.pdb, chain A (#4) with CopB_ Q9JIF7.pdb, |
| 52993 | | chain A (#16), sequence alignment score = 4184.9 |
| 52994 | | RMSD between 418 pruned atom pairs is 0.845 angstroms; (across all 520 pairs: |
| 52995 | | 2.356) |
| 52996 | | |
| 52997 | | |
| 52998 | | > hide #15 models |
| 52999 | | |
| 53000 | | > show #15 models |
| 53001 | | |
| 53002 | | > hide #15 models |
| 53003 | | |
| 53004 | | > hide #16 models |
| 53005 | | |
| 53006 | | > show #!4 models |
| 53007 | | |
| 53008 | | > show #15 models |
| 53009 | | |
| 53010 | | > show #16 models |
| 53011 | | |
| 53012 | | > hide #16 models |
| 53013 | | |
| 53014 | | > hide #15 models |
| 53015 | | |
| 53016 | | > show #16 models |
| 53017 | | |
| 53018 | | > hide #!4 models |
| 53019 | | |
| 53020 | | > show #!1 models |
| 53021 | | |
| 53022 | | > hide #16 models |
| 53023 | | |
| 53024 | | > show #16 models |
| 53025 | | |
| 53026 | | > hide #16 models |
| 53027 | | |
| 53028 | | > hide #!1 models |
| 53029 | | |
| 53030 | | > show #15 models |
| 53031 | | |
| 53032 | | > show #!1 models |
| 53033 | | |
| 53034 | | > hide #!1 models |
| 53035 | | |
| 53036 | | > show #!1 models |
| 53037 | | |
| 53038 | | > hide #15 models |
| 53039 | | |
| 53040 | | > show #15 models |
| 53041 | | |
| 53042 | | > hide #!1 models |
| 53043 | | |
| 53044 | | > show #!1 models |
| 53045 | | |
| 53046 | | > hide #!1 models |
| 53047 | | |
| 53048 | | > show #32.1 models |
| 53049 | | |
| 53050 | | > hide #32.1 models |
| 53051 | | |
| 53052 | | > show #32.1 models |
| 53053 | | |
| 53054 | | > hide #32.1 models |
| 53055 | | |
| 53056 | | > show #32.1 models |
| 53057 | | |
| 53058 | | > hide #32.1 models |
| 53059 | | |
| 53060 | | > show #32.1 models |
| 53061 | | |
| 53062 | | > hide #32.1 models |
| 53063 | | |
| 53064 | | Drag select of 91 residues |
| 53065 | | |
| 53066 | | > select up |
| 53067 | | |
| 53068 | | 886 atoms, 896 bonds, 116 residues, 1 model selected |
| 53069 | | Drag select of 42 residues |
| 53070 | | Drag select of 58 residues |
| 53071 | | |
| 53072 | | > select up |
| 53073 | | |
| 53074 | | 562 atoms, 567 bonds, 73 residues, 1 model selected |
| 53075 | | |
| 53076 | | > delete sel |
| 53077 | | |
| 53078 | | Drag select of 34 residues, 1 pseudobonds |
| 53079 | | |
| 53080 | | > select up |
| 53081 | | |
| 53082 | | 376 atoms, 382 bonds, 1 pseudobond, 48 residues, 2 models selected |
| 53083 | | |
| 53084 | | > delete sel |
| 53085 | | |
| 53086 | | > show #!1 models |
| 53087 | | |
| 53088 | | > fitmap #15 inMap #1 |
| 53089 | | |
| 53090 | | Fit molecule CopB_ Q9JIF7.pdb (#15) to map |
| 53091 | | relion_locres_filtered_20240326_GT.mrc (#1) using 6563 atoms |
| 53092 | | average map value = 0.007851, steps = 132 |
| 53093 | | shifted from previous position = 8.19 |
| 53094 | | rotated from previous position = 7.85 degrees |
| 53095 | | atoms outside contour = 3176, contour level = 0.0047281 |
| 53096 | | |
| 53097 | | Position of CopB_ Q9JIF7.pdb (#15) relative to |
| 53098 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 53099 | | Matrix rotation and translation |
| 53100 | | -0.01844824 -0.74284748 0.66920646 220.14509666 |
| 53101 | | -0.03147128 0.66942014 0.74221710 241.70022532 |
| 53102 | | -0.99933439 -0.00736819 -0.03572798 272.50039049 |
| 53103 | | Axis -0.38192670 0.85015048 0.36245850 |
| 53104 | | Axis point 257.63491425 0.00000000 -62.53223112 |
| 53105 | | Rotation angle (degrees) 101.09159635 |
| 53106 | | Shift along axis 220.17235598 |
| 53107 | | |
| 53108 | | |
| 53109 | | > hide #!1 models |
| 53110 | | |
| 53111 | | Drag select of 24 residues |
| 53112 | | |
| 53113 | | > select up |
| 53114 | | |
| 53115 | | 303 atoms, 304 bonds, 40 residues, 1 model selected |
| 53116 | | |
| 53117 | | > select up |
| 53118 | | |
| 53119 | | 6563 atoms, 6664 bonds, 832 residues, 1 model selected |
| 53120 | | |
| 53121 | | > select down |
| 53122 | | |
| 53123 | | 303 atoms, 304 bonds, 40 residues, 1 model selected |
| 53124 | | Drag select of 33 residues |
| 53125 | | |
| 53126 | | > select up |
| 53127 | | |
| 53128 | | 424 atoms, 427 bonds, 54 residues, 1 model selected |
| 53129 | | Drag select of 6 residues |
| 53130 | | Drag select of 93 residues |
| 53131 | | |
| 53132 | | > select up |
| 53133 | | |
| 53134 | | 943 atoms, 955 bonds, 123 residues, 1 model selected |
| 53135 | | Drag select of 108 residues |
| 53136 | | |
| 53137 | | > select down |
| 53138 | | |
| 53139 | | 828 atoms, 108 residues, 1 model selected |
| 53140 | | |
| 53141 | | > select up |
| 53142 | | |
| 53143 | | 984 atoms, 997 bonds, 130 residues, 1 model selected |
| 53144 | | |
| 53145 | | > select up |
| 53146 | | |
| 53147 | | 6563 atoms, 6664 bonds, 832 residues, 1 model selected |
| 53148 | | |
| 53149 | | > select down |
| 53150 | | |
| 53151 | | 984 atoms, 997 bonds, 130 residues, 1 model selected |
| 53152 | | |
| 53153 | | > select clear |
| 53154 | | |
| 53155 | | Drag select of 114 residues |
| 53156 | | |
| 53157 | | > select up |
| 53158 | | |
| 53159 | | 930 atoms, 945 bonds, 122 residues, 1 model selected |
| 53160 | | |
| 53161 | | > delete sel |
| 53162 | | |
| 53163 | | Drag select of 3 residues |
| 53164 | | |
| 53165 | | > delete sel |
| 53166 | | |
| 53167 | | > show #!1 models |
| 53168 | | |
| 53169 | | > fitmap #15 inMap #1 |
| 53170 | | |
| 53171 | | Fit molecule CopB_ Q9JIF7.pdb (#15) to map |
| 53172 | | relion_locres_filtered_20240326_GT.mrc (#1) using 5609 atoms |
| 53173 | | average map value = 0.008594, steps = 72 |
| 53174 | | shifted from previous position = 0.0768 |
| 53175 | | rotated from previous position = 0.628 degrees |
| 53176 | | atoms outside contour = 2493, contour level = 0.0047281 |
| 53177 | | |
| 53178 | | Position of CopB_ Q9JIF7.pdb (#15) relative to |
| 53179 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 53180 | | Matrix rotation and translation |
| 53181 | | -0.02232557 -0.74737698 0.66402501 220.08242939 |
| 53182 | | -0.02402614 0.66439983 0.74699104 241.71444367 |
| 53183 | | -0.99946201 0.00072304 -0.03278969 272.56997046 |
| 53184 | | Axis -0.38046477 0.84808436 0.36878107 |
| 53185 | | Axis point 256.54257924 0.00000000 -63.53916094 |
| 53186 | | Rotation angle (degrees) 101.26562109 |
| 53187 | | Shift along axis 221.77927269 |
| 53188 | | |
| 53189 | | |
| 53190 | | > fitmap #15 inMap #1 |
| 53191 | | |
| 53192 | | Fit molecule CopB_ Q9JIF7.pdb (#15) to map |
| 53193 | | relion_locres_filtered_20240326_GT.mrc (#1) using 5609 atoms |
| 53194 | | average map value = 0.008594, steps = 60 |
| 53195 | | shifted from previous position = 0.00441 |
| 53196 | | rotated from previous position = 0.00916 degrees |
| 53197 | | atoms outside contour = 2491, contour level = 0.0047281 |
| 53198 | | |
| 53199 | | Position of CopB_ Q9JIF7.pdb (#15) relative to |
| 53200 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 53201 | | Matrix rotation and translation |
| 53202 | | -0.02228893 -0.74731749 0.66409320 220.07875194 |
| 53203 | | -0.02389765 0.66446668 0.74693569 241.71413304 |
| 53204 | | -0.99946591 0.00077814 -0.03266938 272.56807915 |
| 53205 | | Axis -0.38039983 0.84810184 0.36880787 |
| 53206 | | Axis point 256.53065659 0.00000000 -63.55295808 |
| 53207 | | Rotation angle (degrees) 101.25908391 |
| 53208 | | Shift along axis 221.80553434 |
| 53209 | | |
| 53210 | | |
| 53211 | | > fitmap #15 inMap #1 |
| 53212 | | |
| 53213 | | Fit molecule CopB_ Q9JIF7.pdb (#15) to map |
| 53214 | | relion_locres_filtered_20240326_GT.mrc (#1) using 5609 atoms |
| 53215 | | average map value = 0.008594, steps = 76 |
| 53216 | | shifted from previous position = 0.0166 |
| 53217 | | rotated from previous position = 0.00886 degrees |
| 53218 | | atoms outside contour = 2488, contour level = 0.0047281 |
| 53219 | | |
| 53220 | | Position of CopB_ Q9JIF7.pdb (#15) relative to |
| 53221 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 53222 | | Matrix rotation and translation |
| 53223 | | -0.02232063 -0.74736321 0.66404068 220.06468865 |
| 53224 | | -0.02403359 0.66441532 0.74697702 241.70565054 |
| 53225 | | -0.99946194 0.00071372 -0.03279199 272.57067260 |
| 53226 | | Axis -0.38046168 0.84809074 0.36876958 |
| 53227 | | Axis point 256.53287602 0.00000000 -63.52597982 |
| 53228 | | Rotation angle (degrees) 101.26509137 |
| 53229 | | Shift along axis 221.77791678 |
| 53230 | | |
| 53231 | | |
| 53232 | | > fitmap #15 inMap #1 |
| 53233 | | |
| 53234 | | Fit molecule CopB_ Q9JIF7.pdb (#15) to map |
| 53235 | | relion_locres_filtered_20240326_GT.mrc (#1) using 5609 atoms |
| 53236 | | average map value = 0.008594, steps = 76 |
| 53237 | | shifted from previous position = 0.0078 |
| 53238 | | rotated from previous position = 0.0159 degrees |
| 53239 | | atoms outside contour = 2491, contour level = 0.0047281 |
| 53240 | | |
| 53241 | | Position of CopB_ Q9JIF7.pdb (#15) relative to |
| 53242 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 53243 | | Matrix rotation and translation |
| 53244 | | -0.02247122 -0.74746006 0.66392658 220.06921073 |
| 53245 | | -0.02421650 0.66430637 0.74706801 241.70092821 |
| 53246 | | -0.99945415 0.00070955 -0.03302864 272.57488700 |
| 53247 | | Axis -0.38052938 0.84807136 0.36874429 |
| 53248 | | Axis point 256.53348528 0.00000000 -63.48963462 |
| 53249 | | Rotation angle (degrees) 101.27958588 |
| 53250 | | Shift along axis 221.74727038 |
| 53251 | | |
| 53252 | | |
| 53253 | | > hide #!1 models |
| 53254 | | |
| 53255 | | Drag select of 11 residues |
| 53256 | | |
| 53257 | | > select up |
| 53258 | | |
| 53259 | | 163 atoms, 166 bonds, 22 residues, 1 model selected |
| 53260 | | |
| 53261 | | > delete sel |
| 53262 | | |
| 53263 | | > fitmap #15 inMap #1 |
| 53264 | | |
| 53265 | | Fit molecule CopB_ Q9JIF7.pdb (#15) to map |
| 53266 | | relion_locres_filtered_20240326_GT.mrc (#1) using 5446 atoms |
| 53267 | | average map value = 0.008714, steps = 76 |
| 53268 | | shifted from previous position = 0.0618 |
| 53269 | | rotated from previous position = 0.525 degrees |
| 53270 | | atoms outside contour = 2382, contour level = 0.0047281 |
| 53271 | | |
| 53272 | | Position of CopB_ Q9JIF7.pdb (#15) relative to |
| 53273 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 53274 | | Matrix rotation and translation |
| 53275 | | -0.02596350 -0.75079113 0.66002923 220.02712084 |
| 53276 | | -0.01759900 0.66049277 0.75062612 241.71169737 |
| 53277 | | -0.99950796 0.00787303 -0.03036188 272.65278835 |
| 53278 | | Axis -0.37887103 0.84651355 0.37399407 |
| 53279 | | Axis point 255.53355241 0.00000000 -64.28644925 |
| 53280 | | Rotation angle (degrees) 101.41513659 |
| 53281 | | Shift along axis 223.22085069 |
| 53282 | | |
| 53283 | | |
| 53284 | | > show #!1 models |
| 53285 | | |
| 53286 | | > hide #!1 models |
| 53287 | | |
| 53288 | | > show #!1 models |
| 53289 | | |
| 53290 | | > hide #!1 models |
| 53291 | | |
| 53292 | | > show #32.1 models |
| 53293 | | |
| 53294 | | > hide #32.1 models |
| 53295 | | |
| 53296 | | > show #32.1 models |
| 53297 | | |
| 53298 | | > hide #32.1 models |
| 53299 | | |
| 53300 | | > show #32.1 models |
| 53301 | | |
| 53302 | | > hide #32.1 models |
| 53303 | | |
| 53304 | | > show #32.1 models |
| 53305 | | |
| 53306 | | > show #!1 models |
| 53307 | | |
| 53308 | | > hide #32.1 models |
| 53309 | | |
| 53310 | | > show #32.1 models |
| 53311 | | |
| 53312 | | > hide #!15 models |
| 53313 | | |
| 53314 | | > show #!15 models |
| 53315 | | |
| 53316 | | > hide #!15 models |
| 53317 | | |
| 53318 | | > hide #32.1 models |
| 53319 | | |
| 53320 | | > show #!15 models |
| 53321 | | |
| 53322 | | > hide #!1 models |
| 53323 | | |
| 53324 | | > show #32.1 models |
| 53325 | | |
| 53326 | | > hide #32.1 models |
| 53327 | | |
| 53328 | | > show #32.1 models |
| 53329 | | |
| 53330 | | > hide #32.1 models |
| 53331 | | |
| 53332 | | > show #32.1 models |
| 53333 | | |
| 53334 | | > ui tool show Matchmaker |
| 53335 | | |
| 53336 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 53337 | | QTBUG which explains how to reproduce. |
| 53338 | | |
| 53339 | | > matchmaker #!15 to #32.1 |
| 53340 | | |
| 53341 | | Parameters |
| 53342 | | --- |
| 53343 | | Chain pairing | bb |
| 53344 | | Alignment algorithm | Needleman-Wunsch |
| 53345 | | Similarity matrix | BLOSUM-62 |
| 53346 | | SS fraction | 0.3 |
| 53347 | | Gap open (HH/SS/other) | 18/18/6 |
| 53348 | | Gap extend | 1 |
| 53349 | | SS matrix | | | H | S | O |
| 53350 | | ---|---|---|--- |
| 53351 | | H | 6 | -9 | -6 |
| 53352 | | S | | 6 | -6 |
| 53353 | | O | | | 4 |
| 53354 | | Iteration cutoff | 2 |
| 53355 | | |
| 53356 | | Matchmaker 5mu7_Thermophila_beta_deltaCOPI.cif A, chain A (#32.1) with CopB_ |
| 53357 | | Q9JIF7.pdb, chain A (#15), sequence alignment score = 1250.8 |
| 53358 | | RMSD between 252 pruned atom pairs is 1.196 angstroms; (across all 369 pairs: |
| 53359 | | 1.979) |
| 53360 | | |
| 53361 | | |
| 53362 | | > show #!1 models |
| 53363 | | |
| 53364 | | > hide #!1 models |
| 53365 | | |
| 53366 | | > hide #32.1 models |
| 53367 | | |
| 53368 | | > show #!1 models |
| 53369 | | |
| 53370 | | > hide #!1 models |
| 53371 | | |
| 53372 | | > show #32.1 models |
| 53373 | | |
| 53374 | | > hide #!15 models |
| 53375 | | |
| 53376 | | > show #!15 models |
| 53377 | | |
| 53378 | | > hide #!15 models |
| 53379 | | |
| 53380 | | > show #!15 models |
| 53381 | | |
| 53382 | | > hide #32.1 models |
| 53383 | | |
| 53384 | | > show #32.1 models |
| 53385 | | |
| 53386 | | > hide #32.1 models |
| 53387 | | |
| 53388 | | > show #32.1 models |
| 53389 | | |
| 53390 | | > hide #32.1 models |
| 53391 | | |
| 53392 | | > show #!1 models |
| 53393 | | |
| 53394 | | > hide #!1 models |
| 53395 | | |
| 53396 | | > show #!1 models |
| 53397 | | |
| 53398 | | > hide #!1 models |
| 53399 | | |
| 53400 | | > show #!1 models |
| 53401 | | |
| 53402 | | > hide #!1 models |
| 53403 | | |
| 53404 | | Drag select of 201 residues |
| 53405 | | |
| 53406 | | > select up |
| 53407 | | |
| 53408 | | 1960 atoms, 1982 bonds, 249 residues, 1 model selected |
| 53409 | | Drag select of 34 residues |
| 53410 | | |
| 53411 | | > select up |
| 53412 | | |
| 53413 | | 356 atoms, 359 bonds, 46 residues, 1 model selected |
| 53414 | | |
| 53415 | | > delete sel |
| 53416 | | |
| 53417 | | Drag select of 250 residues |
| 53418 | | |
| 53419 | | > select up |
| 53420 | | |
| 53421 | | 2072 atoms, 2098 bonds, 264 residues, 1 model selected |
| 53422 | | |
| 53423 | | > delete sel |
| 53424 | | |
| 53425 | | Drag select of 3 residues |
| 53426 | | |
| 53427 | | > delete sel |
| 53428 | | |
| 53429 | | > fitmap #15 inMap #1 |
| 53430 | | |
| 53431 | | Fit molecule CopB_ Q9JIF7.pdb (#15) to map |
| 53432 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2995 atoms |
| 53433 | | average map value = 0.01087, steps = 52 |
| 53434 | | shifted from previous position = 0.203 |
| 53435 | | rotated from previous position = 2.56 degrees |
| 53436 | | atoms outside contour = 1018, contour level = 0.0047281 |
| 53437 | | |
| 53438 | | Position of CopB_ Q9JIF7.pdb (#15) relative to |
| 53439 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 53440 | | Matrix rotation and translation |
| 53441 | | -0.02724952 -0.68722196 0.72593625 220.50900449 |
| 53442 | | 0.02502038 0.72550951 0.68775717 239.42442791 |
| 53443 | | -0.99931549 0.03690425 -0.00257523 273.99104548 |
| 53444 | | Axis -0.32926029 0.87278841 0.36031661 |
| 53445 | | Axis point 248.43699619 0.00000000 -58.82961491 |
| 53446 | | Rotation angle (degrees) 98.75198425 |
| 53447 | | Shift along axis 235.08553176 |
| 53448 | | |
| 53449 | | |
| 53450 | | > show #!1 models |
| 53451 | | |
| 53452 | | > hide #!1 models |
| 53453 | | |
| 53454 | | > show #!1 models |
| 53455 | | |
| 53456 | | > hide #!1 models |
| 53457 | | |
| 53458 | | > rename #15 "CopB_ Q9JIF7_G23-F394.pdb" |
| 53459 | | |
| 53460 | | > hide #!15 models |
| 53461 | | |
| 53462 | | > show #!15 models |
| 53463 | | |
| 53464 | | > hide #!15 models |
| 53465 | | |
| 53466 | | > show #!15 models |
| 53467 | | |
| 53468 | | > show #16 models |
| 53469 | | |
| 53470 | | > hide #!15 models |
| 53471 | | |
| 53472 | | Drag select of 73 residues |
| 53473 | | |
| 53474 | | > select up |
| 53475 | | |
| 53476 | | 781 atoms, 794 bonds, 99 residues, 1 model selected |
| 53477 | | |
| 53478 | | > delete sel |
| 53479 | | |
| 53480 | | Drag select of 92 residues |
| 53481 | | |
| 53482 | | > select up |
| 53483 | | |
| 53484 | | 903 atoms, 922 bonds, 110 residues, 1 model selected |
| 53485 | | |
| 53486 | | > delete sel |
| 53487 | | |
| 53488 | | Drag select of 3 residues |
| 53489 | | |
| 53490 | | > delete sel |
| 53491 | | |
| 53492 | | Drag select of 44 residues |
| 53493 | | |
| 53494 | | > select up |
| 53495 | | |
| 53496 | | 364 atoms, 369 bonds, 45 residues, 1 model selected |
| 53497 | | |
| 53498 | | > delete sel |
| 53499 | | |
| 53500 | | Drag select of 91 residues |
| 53501 | | |
| 53502 | | > select up |
| 53503 | | |
| 53504 | | 726 atoms, 731 bonds, 94 residues, 1 model selected |
| 53505 | | |
| 53506 | | > select up |
| 53507 | | |
| 53508 | | 5427 atoms, 5504 bonds, 696 residues, 1 model selected |
| 53509 | | |
| 53510 | | > select clear |
| 53511 | | |
| 53512 | | Drag select of 62 residues |
| 53513 | | |
| 53514 | | > select up |
| 53515 | | |
| 53516 | | 562 atoms, 568 bonds, 73 residues, 1 model selected |
| 53517 | | |
| 53518 | | > delete sel |
| 53519 | | |
| 53520 | | Drag select of 24 residues |
| 53521 | | |
| 53522 | | > select clear |
| 53523 | | |
| 53524 | | Drag select of 20 residues |
| 53525 | | |
| 53526 | | > select up |
| 53527 | | |
| 53528 | | 174 atoms, 174 bonds, 22 residues, 1 model selected |
| 53529 | | |
| 53530 | | > delete sel |
| 53531 | | |
| 53532 | | Drag select of 36 residues |
| 53533 | | |
| 53534 | | > select up |
| 53535 | | |
| 53536 | | 446 atoms, 451 bonds, 53 residues, 1 model selected |
| 53537 | | |
| 53538 | | > select clear |
| 53539 | | |
| 53540 | | Drag select of 19 residues |
| 53541 | | |
| 53542 | | > select up |
| 53543 | | |
| 53544 | | 337 atoms, 339 bonds, 41 residues, 1 model selected |
| 53545 | | |
| 53546 | | > delete sel |
| 53547 | | |
| 53548 | | > show #!1 models |
| 53549 | | |
| 53550 | | > fitmap #16 inMap #1 |
| 53551 | | |
| 53552 | | Fit molecule CopB_ Q9JIF7.pdb (#16) to map |
| 53553 | | relion_locres_filtered_20240326_GT.mrc (#1) using 4354 atoms |
| 53554 | | average map value = 0.007983, steps = 64 |
| 53555 | | shifted from previous position = 1.62 |
| 53556 | | rotated from previous position = 2.08 degrees |
| 53557 | | atoms outside contour = 1739, contour level = 0.0047281 |
| 53558 | | |
| 53559 | | Position of CopB_ Q9JIF7.pdb (#16) relative to |
| 53560 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 53561 | | Matrix rotation and translation |
| 53562 | | -0.03640664 -0.65956348 0.75076665 218.50269376 |
| 53563 | | 0.00387517 0.75116587 0.66010212 248.03049444 |
| 53564 | | -0.99932954 0.02694145 -0.02479150 272.25066764 |
| 53565 | | Axis -0.32045400 0.88575516 0.33577824 |
| 53566 | | Axis point 246.48105337 0.00000000 -53.68695182 |
| 53567 | | Rotation angle (degrees) 98.91773215 |
| 53568 | | Shift along axis 241.09007696 |
| 53569 | | |
| 53570 | | |
| 53571 | | > hide #!1 models |
| 53572 | | |
| 53573 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 53574 | | > dataset/Chimera sessions/20240709_leaf_fitting_v39_labelled.cxs" |
| 53575 | | |
| 53576 | | ——— End of log from Tue Jul 9 17:02:08 2024 ——— |
| 53577 | | |
| 53578 | | opened ChimeraX session |
| 53579 | | |
| 53580 | | > show #!1 models |
| 53581 | | |
| 53582 | | > ui tool show "Fit in Map" |
| 53583 | | |
| 53584 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 53585 | | QTBUG which explains how to reproduce. |
| 53586 | | |
| 53587 | | > fitmap #16 inMap #1 |
| 53588 | | |
| 53589 | | Fit molecule CopB_ Q9JIF7.pdb (#16) to map |
| 53590 | | relion_locres_filtered_20240326_GT.mrc (#1) using 4354 atoms |
| 53591 | | average map value = 0.007983, steps = 60 |
| 53592 | | shifted from previous position = 0.00721 |
| 53593 | | rotated from previous position = 0.02 degrees |
| 53594 | | atoms outside contour = 1737, contour level = 0.0047281 |
| 53595 | | |
| 53596 | | Position of CopB_ Q9JIF7.pdb (#16) relative to |
| 53597 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 53598 | | Matrix rotation and translation |
| 53599 | | -0.03643722 -0.65930467 0.75099247 218.49884823 |
| 53600 | | 0.00383116 0.75139382 0.65984290 248.02662965 |
| 53601 | | -0.99932860 0.02692002 -0.02485280 272.24992976 |
| 53602 | | Axis -0.32033020 0.88585940 0.33562135 |
| 53603 | | Axis point 246.46803886 0.00000000 -53.63717478 |
| 53604 | | Rotation angle (degrees) 98.91378636 |
| 53605 | | Shift along axis 241.09783052 |
| 53606 | | |
| 53607 | | |
| 53608 | | > fitmap #16 inMap #1 |
| 53609 | | |
| 53610 | | Fit molecule CopB_ Q9JIF7.pdb (#16) to map |
| 53611 | | relion_locres_filtered_20240326_GT.mrc (#1) using 4354 atoms |
| 53612 | | average map value = 0.007982, steps = 44 |
| 53613 | | shifted from previous position = 0.0305 |
| 53614 | | rotated from previous position = 0.0254 degrees |
| 53615 | | atoms outside contour = 1741, contour level = 0.0047281 |
| 53616 | | |
| 53617 | | Position of CopB_ Q9JIF7.pdb (#16) relative to |
| 53618 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 53619 | | Matrix rotation and translation |
| 53620 | | -0.03647715 -0.65947997 0.75083659 218.52782150 |
| 53621 | | 0.00419660 0.75122890 0.66002843 248.04323495 |
| 53622 | | -0.99932568 0.02722691 -0.02463511 272.24790496 |
| 53623 | | Axis -0.32026844 0.88577813 0.33589468 |
| 53624 | | Axis point 246.44552444 0.00000000 -53.71596676 |
| 53625 | | Rotation angle (degrees) 98.91341394 |
| 53626 | | Shift along axis 241.17032964 |
| 53627 | | |
| 53628 | | |
| 53629 | | > hide #!1 models |
| 53630 | | |
| 53631 | | > show #!4 models |
| 53632 | | |
| 53633 | | > fitmap #4 inMap #1 |
| 53634 | | |
| 53635 | | Fit molecule CopB_Q9JIF7_P395-L953.pdb (#4) to map |
| 53636 | | relion_locres_filtered_20240326_GT.mrc (#1) using 4053 atoms |
| 53637 | | average map value = 0.00875, steps = 48 |
| 53638 | | shifted from previous position = 0.0121 |
| 53639 | | rotated from previous position = 0.014 degrees |
| 53640 | | atoms outside contour = 1375, contour level = 0.0047281 |
| 53641 | | |
| 53642 | | Position of CopB_Q9JIF7_P395-L953.pdb (#4) relative to |
| 53643 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 53644 | | Matrix rotation and translation |
| 53645 | | -0.02337695 -0.73046668 0.68254813 220.14244287 |
| 53646 | | -0.03207702 0.68293123 0.72977805 241.57330662 |
| 53647 | | -0.99921198 -0.00483413 -0.03939604 273.35713550 |
| 53648 | | Axis -0.37411521 0.85646829 0.35566821 |
| 53649 | | Axis point 256.51140605 0.00000000 -59.48371440 |
| 53650 | | Rotation angle (degrees) 100.94816697 |
| 53651 | | Shift along axis 221.76568322 |
| 53652 | | |
| 53653 | | |
| 53654 | | > fitmap #4 inMap #1 |
| 53655 | | |
| 53656 | | Fit molecule CopB_Q9JIF7_P395-L953.pdb (#4) to map |
| 53657 | | relion_locres_filtered_20240326_GT.mrc (#1) using 4053 atoms |
| 53658 | | average map value = 0.00875, steps = 48 |
| 53659 | | shifted from previous position = 0.00579 |
| 53660 | | rotated from previous position = 0.0174 degrees |
| 53661 | | atoms outside contour = 1371, contour level = 0.0047281 |
| 53662 | | |
| 53663 | | Position of CopB_Q9JIF7_P395-L953.pdb (#4) relative to |
| 53664 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 53665 | | Matrix rotation and translation |
| 53666 | | -0.02355850 -0.73044234 0.68256793 220.13580643 |
| 53667 | | -0.03183473 0.68295929 0.72976239 241.57756739 |
| 53668 | | -0.99921546 -0.00453726 -0.03934293 273.34929776 |
| 53669 | | Axis -0.37395975 0.85648862 0.35578272 |
| 53670 | | Axis point 256.45009066 0.00000000 -59.48589705 |
| 53671 | | Rotation angle (degrees) 100.95109604 |
| 53672 | | Shift along axis 221.83946375 |
| 53673 | | |
| 53674 | | |
| 53675 | | > fitmap #4 inMap #1 |
| 53676 | | |
| 53677 | | Fit molecule CopB_Q9JIF7_P395-L953.pdb (#4) to map |
| 53678 | | relion_locres_filtered_20240326_GT.mrc (#1) using 4053 atoms |
| 53679 | | average map value = 0.00875, steps = 40 |
| 53680 | | shifted from previous position = 0.00772 |
| 53681 | | rotated from previous position = 0.0109 degrees |
| 53682 | | atoms outside contour = 1373, contour level = 0.0047281 |
| 53683 | | |
| 53684 | | Position of CopB_Q9JIF7_P395-L953.pdb (#4) relative to |
| 53685 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 53686 | | Matrix rotation and translation |
| 53687 | | -0.02354235 -0.73041659 0.68259604 220.12769576 |
| 53688 | | -0.03202010 0.68298589 0.72972939 241.57433729 |
| 53689 | | -0.99920992 -0.00467725 -0.03946710 273.35408889 |
| 53690 | | Axis -0.37401724 0.85650699 0.35567806 |
| 53691 | | Axis point 256.46580478 0.00000000 -59.45365642 |
| 53692 | | Rotation angle (degrees) 100.95347164 |
| 53693 | | Shift along axis 221.80460690 |
| 53694 | | |
| 53695 | | |
| 53696 | | > fitmap #16 inMap #1 |
| 53697 | | |
| 53698 | | Fit molecule CopB_ Q9JIF7.pdb (#16) to map |
| 53699 | | relion_locres_filtered_20240326_GT.mrc (#1) using 4354 atoms |
| 53700 | | average map value = 0.007983, steps = 48 |
| 53701 | | shifted from previous position = 0.0411 |
| 53702 | | rotated from previous position = 0.0515 degrees |
| 53703 | | atoms outside contour = 1736, contour level = 0.0047281 |
| 53704 | | |
| 53705 | | Position of CopB_ Q9JIF7.pdb (#16) relative to |
| 53706 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 53707 | | Matrix rotation and translation |
| 53708 | | -0.03638626 -0.65899236 0.75126900 218.48669982 |
| 53709 | | 0.00360782 0.75167529 0.65952349 248.02017180 |
| 53710 | | -0.99933129 0.02670804 -0.02497312 272.25136210 |
| 53711 | | Axis -0.32027043 0.88598580 0.33534460 |
| 53712 | | Axis point 246.48102243 0.00000000 -53.56712757 |
| 53713 | | Rotation angle (degrees) 98.90763551 |
| 53714 | | Shift along axis 241.06554695 |
| 53715 | | |
| 53716 | | |
| 53717 | | > fitmap #16 inMap #1 |
| 53718 | | |
| 53719 | | Fit molecule CopB_ Q9JIF7.pdb (#16) to map |
| 53720 | | relion_locres_filtered_20240326_GT.mrc (#1) using 4354 atoms |
| 53721 | | average map value = 0.007983, steps = 44 |
| 53722 | | shifted from previous position = 0.0131 |
| 53723 | | rotated from previous position = 0.0397 degrees |
| 53724 | | atoms outside contour = 1740, contour level = 0.0047281 |
| 53725 | | |
| 53726 | | Position of CopB_ Q9JIF7.pdb (#16) relative to |
| 53727 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 53728 | | Matrix rotation and translation |
| 53729 | | -0.03637895 -0.65951364 0.75081178 218.49894110 |
| 53730 | | 0.00358828 0.75121805 0.66004437 248.02561118 |
| 53731 | | -0.99933162 0.02670584 -0.02496200 272.25349195 |
| 53732 | | Axis -0.32054633 0.88578543 0.33561022 |
| 53733 | | Axis point 246.51297715 0.00000000 -53.64753499 |
| 53734 | | Rotation angle (degrees) 98.92036028 |
| 53735 | | Shift along axis 241.02949485 |
| 53736 | | |
| 53737 | | |
| 53738 | | > show #!1 models |
| 53739 | | |
| 53740 | | > hide #!1 models |
| 53741 | | |
| 53742 | | > hide #!4 models |
| 53743 | | |
| 53744 | | > show #!4 models |
| 53745 | | |
| 53746 | | > hide #!4 models |
| 53747 | | |
| 53748 | | > show #!4 models |
| 53749 | | |
| 53750 | | > hide #!16 models |
| 53751 | | |
| 53752 | | > show #!16 models |
| 53753 | | |
| 53754 | | > hide #!16 models |
| 53755 | | |
| 53756 | | > show #!16 models |
| 53757 | | |
| 53758 | | > show #!1 models |
| 53759 | | |
| 53760 | | > hide #!4 models |
| 53761 | | |
| 53762 | | > show #!4 models |
| 53763 | | |
| 53764 | | > hide #!4 models |
| 53765 | | |
| 53766 | | > hide #!1 models |
| 53767 | | |
| 53768 | | > hide #!16 models |
| 53769 | | |
| 53770 | | > show #!16 models |
| 53771 | | |
| 53772 | | > rename #16 "CopB_ Q9JIF7_.pdb" |
| 53773 | | |
| 53774 | | > rename #16 "CopB_ Q9JIF7_F394-L953.pdb" |
| 53775 | | |
| 53776 | | > hide #!16 models |
| 53777 | | |
| 53778 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 53779 | | > dataset/Chimera sessions/20240709_leaf_fitting_v40_labelled.cxs" |
| 53780 | | |
| 53781 | | > show #!3 models |
| 53782 | | |
| 53783 | | > show #!7 models |
| 53784 | | |
| 53785 | | > show #27.1 models |
| 53786 | | |
| 53787 | | > hide #27.1 models |
| 53788 | | |
| 53789 | | > show #27.1 models |
| 53790 | | |
| 53791 | | > hide #27.1 models |
| 53792 | | |
| 53793 | | > show #27.1 models |
| 53794 | | |
| 53795 | | > hide #27.1 models |
| 53796 | | |
| 53797 | | > show #27.1 models |
| 53798 | | |
| 53799 | | > hide #27.1 models |
| 53800 | | |
| 53801 | | > show #27.1 models |
| 53802 | | |
| 53803 | | > hide #!3 models |
| 53804 | | |
| 53805 | | > hide #!7 models |
| 53806 | | |
| 53807 | | > show #!3 models |
| 53808 | | |
| 53809 | | > hide #27.1 models |
| 53810 | | |
| 53811 | | > hide #!3 models |
| 53812 | | |
| 53813 | | > show #!7 models |
| 53814 | | |
| 53815 | | > hide #!7 models |
| 53816 | | |
| 53817 | | > rename #7 CopBprime_O55029_beta_props_M1-S586.pdb |
| 53818 | | |
| 53819 | | > rename #3 CopBprime_O55029_solenoid_L587-E838.pdb |
| 53820 | | |
| 53821 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 53822 | | > dataset/Chimera sessions/20240709_leaf_fitting_v40_labelled.cxs" |
| 53823 | | |
| 53824 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 53825 | | > dataset/Structure files/alphafold/CopBprime_O55029.pdb" |
| 53826 | | |
| 53827 | | CopBprime_O55029.pdb title: |
| 53828 | | Alphafold monomer V2.0 prediction for coatomer subunit β' (O55029) [more |
| 53829 | | info...] |
| 53830 | | |
| 53831 | | Chain information for CopBprime_O55029.pdb #17 |
| 53832 | | --- |
| 53833 | | Chain | Description | UniProt |
| 53834 | | A | coatomer subunit β' | COPB2_MOUSE 1-905 |
| 53835 | | |
| 53836 | | |
| 53837 | | > ui tool show Matchmaker |
| 53838 | | |
| 53839 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 53840 | | QTBUG which explains how to reproduce. |
| 53841 | | |
| 53842 | | > matchmaker #17 to #3 |
| 53843 | | |
| 53844 | | Parameters |
| 53845 | | --- |
| 53846 | | Chain pairing | bb |
| 53847 | | Alignment algorithm | Needleman-Wunsch |
| 53848 | | Similarity matrix | BLOSUM-62 |
| 53849 | | SS fraction | 0.3 |
| 53850 | | Gap open (HH/SS/other) | 18/18/6 |
| 53851 | | Gap extend | 1 |
| 53852 | | SS matrix | | | H | S | O |
| 53853 | | ---|---|---|--- |
| 53854 | | H | 6 | -9 | -6 |
| 53855 | | S | | 6 | -6 |
| 53856 | | O | | | 4 |
| 53857 | | Iteration cutoff | 2 |
| 53858 | | |
| 53859 | | Matchmaker CopBprime_O55029_solenoid_L587-E838.pdb, chain A (#3) with |
| 53860 | | CopBprime_O55029.pdb, chain A (#17), sequence alignment score = 3580.9 |
| 53861 | | RMSD between 253 pruned atom pairs is 0.000 angstroms; (across all 253 pairs: |
| 53862 | | 0.000) |
| 53863 | | |
| 53864 | | |
| 53865 | | > color #17 cyan |
| 53866 | | |
| 53867 | | > close #17 |
| 53868 | | |
| 53869 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 53870 | | > dataset/Chimera sessions/20240709_leaf_fitting_v40_labelled.cxs" |
| 53871 | | |
| 53872 | | > show #!30 models |
| 53873 | | |
| 53874 | | > show #!2 models |
| 53875 | | |
| 53876 | | > show #27.2 models |
| 53877 | | |
| 53878 | | > hide #!2 models |
| 53879 | | |
| 53880 | | > hide #27.2 models |
| 53881 | | |
| 53882 | | > hide #!30 models |
| 53883 | | |
| 53884 | | > hide #!32 models |
| 53885 | | |
| 53886 | | > show #!13 models |
| 53887 | | |
| 53888 | | > show #!14 models |
| 53889 | | |
| 53890 | | > show #!1 models |
| 53891 | | |
| 53892 | | > fitmap #13 inMap #1 |
| 53893 | | |
| 53894 | | Fit molecule CopA-Q8CIE6_solenoid.pdb (#13) to map |
| 53895 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1493 atoms |
| 53896 | | average map value = 0.009856, steps = 40 |
| 53897 | | shifted from previous position = 0.04 |
| 53898 | | rotated from previous position = 0.256 degrees |
| 53899 | | atoms outside contour = 504, contour level = 0.0047281 |
| 53900 | | |
| 53901 | | Position of CopA-Q8CIE6_solenoid.pdb (#13) relative to |
| 53902 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 53903 | | Matrix rotation and translation |
| 53904 | | -0.09214279 0.81710559 -0.56907658 198.83642817 |
| 53905 | | -0.30256058 -0.56746131 -0.76579681 282.30024669 |
| 53906 | | -0.94866580 0.10161748 0.29951141 272.32967343 |
| 53907 | | Axis 0.59155130 0.25886880 -0.76357973 |
| 53908 | | Axis point 286.85143345 127.57854798 0.00000000 |
| 53909 | | Rotation angle (degrees) 132.84726465 |
| 53910 | | Shift along axis -17.24474722 |
| 53911 | | |
| 53912 | | |
| 53913 | | > fitmap #14 inMap #1 |
| 53914 | | |
| 53915 | | Fit molecule CopA-Q8CIE6_beta_props.pdb (#14) to map |
| 53916 | | relion_locres_filtered_20240326_GT.mrc (#1) using 4763 atoms |
| 53917 | | average map value = 0.008718, steps = 28 |
| 53918 | | shifted from previous position = 0.024 |
| 53919 | | rotated from previous position = 0.0248 degrees |
| 53920 | | atoms outside contour = 1497, contour level = 0.0047281 |
| 53921 | | |
| 53922 | | Position of CopA-Q8CIE6_beta_props.pdb (#14) relative to |
| 53923 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 53924 | | Matrix rotation and translation |
| 53925 | | -0.34442107 0.69704982 -0.62888447 201.10586095 |
| 53926 | | 0.21648780 -0.59284749 -0.77567060 281.00648441 |
| 53927 | | -0.91351363 -0.40330312 0.05328639 263.96649003 |
| 53928 | | Axis 0.55471611 0.42401227 -0.71589359 |
| 53929 | | Axis point 234.60558972 197.19377182 0.00000000 |
| 53930 | | Rotation angle (degrees) 160.38866792 |
| 53931 | | Shift along axis 41.73494188 |
| 53932 | | |
| 53933 | | |
| 53934 | | > hide #!13 models |
| 53935 | | |
| 53936 | | > hide #!1 models |
| 53937 | | |
| 53938 | | > rename #14 CopA-Q8CIE6_beta_props_M1-T591.pdb |
| 53939 | | |
| 53940 | | > hide #!14 models |
| 53941 | | |
| 53942 | | > show #!13 models |
| 53943 | | |
| 53944 | | > hide #!13 models |
| 53945 | | |
| 53946 | | > show #!13 models |
| 53947 | | |
| 53948 | | > show #!1 models |
| 53949 | | |
| 53950 | | > hide #!1 models |
| 53951 | | |
| 53952 | | > rename #13 CopA-Q8CIE6_solenoid_I592-T777.pdb |
| 53953 | | |
| 53954 | | > hide #!13 models |
| 53955 | | |
| 53956 | | > show #!13 models |
| 53957 | | |
| 53958 | | > hide #!13 models |
| 53959 | | |
| 53960 | | > show #!14 models |
| 53961 | | |
| 53962 | | > hide #!14 models |
| 53963 | | |
| 53964 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 53965 | | > dataset/Structure files/alphafold/CopA-Q8CIE6.pdb" |
| 53966 | | |
| 53967 | | CopA-Q8CIE6.pdb title: |
| 53968 | | Alphafold monomer V2.0 prediction for coatomer subunit α (Q8CIE6) [more |
| 53969 | | info...] |
| 53970 | | |
| 53971 | | Chain information for CopA-Q8CIE6.pdb #17 |
| 53972 | | --- |
| 53973 | | Chain | Description | UniProt |
| 53974 | | A | coatomer subunit α | COPA_MOUSE 1-1224 |
| 53975 | | |
| 53976 | | |
| 53977 | | > ui tool show Matchmaker |
| 53978 | | |
| 53979 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 53980 | | QTBUG which explains how to reproduce. |
| 53981 | | |
| 53982 | | > matchmaker #17 to #13 |
| 53983 | | |
| 53984 | | Parameters |
| 53985 | | --- |
| 53986 | | Chain pairing | bb |
| 53987 | | Alignment algorithm | Needleman-Wunsch |
| 53988 | | Similarity matrix | BLOSUM-62 |
| 53989 | | SS fraction | 0.3 |
| 53990 | | Gap open (HH/SS/other) | 18/18/6 |
| 53991 | | Gap extend | 1 |
| 53992 | | SS matrix | | | H | S | O |
| 53993 | | ---|---|---|--- |
| 53994 | | H | 6 | -9 | -6 |
| 53995 | | S | | 6 | -6 |
| 53996 | | O | | | 4 |
| 53997 | | Iteration cutoff | 2 |
| 53998 | | |
| 53999 | | Matchmaker CopA-Q8CIE6_solenoid_I592-T777.pdb, chain A (#13) with |
| 54000 | | CopA-Q8CIE6.pdb, chain A (#17), sequence alignment score = 4842.3 |
| 54001 | | RMSD between 186 pruned atom pairs is 0.000 angstroms; (across all 186 pairs: |
| 54002 | | 0.000) |
| 54003 | | |
| 54004 | | |
| 54005 | | > show #!14 models |
| 54006 | | |
| 54007 | | > show #!13 models |
| 54008 | | |
| 54009 | | > hide #!13 models |
| 54010 | | |
| 54011 | | > show #!13 models |
| 54012 | | |
| 54013 | | > hide #!14 models |
| 54014 | | |
| 54015 | | > hide #17 models |
| 54016 | | |
| 54017 | | > show #17 models |
| 54018 | | |
| 54019 | | > show #!1 models |
| 54020 | | |
| 54021 | | > show #!3 models |
| 54022 | | |
| 54023 | | > hide #17 models |
| 54024 | | |
| 54025 | | > hide #!3 models |
| 54026 | | |
| 54027 | | > show #17 models |
| 54028 | | |
| 54029 | | > show #!3 models |
| 54030 | | |
| 54031 | | > hide #!3 models |
| 54032 | | |
| 54033 | | > hide #!1 models |
| 54034 | | |
| 54035 | | > ui mousemode right select |
| 54036 | | |
| 54037 | | Drag select of 324 residues |
| 54038 | | |
| 54039 | | > select up |
| 54040 | | |
| 54041 | | 2945 atoms, 3023 bonds, 360 residues, 1 model selected |
| 54042 | | |
| 54043 | | > delete sel |
| 54044 | | |
| 54045 | | > hide #!13 models |
| 54046 | | |
| 54047 | | > show #!13 models |
| 54048 | | |
| 54049 | | > hide #!17 models |
| 54050 | | |
| 54051 | | > show #!17 models |
| 54052 | | |
| 54053 | | > hide #!13 models |
| 54054 | | |
| 54055 | | > show #!13 models |
| 54056 | | |
| 54057 | | > hide #!13 models |
| 54058 | | |
| 54059 | | Drag select of 220 residues, 4 pseudobonds |
| 54060 | | |
| 54061 | | > select up |
| 54062 | | |
| 54063 | | 1806 atoms, 1835 bonds, 4 pseudobonds, 229 residues, 2 models selected |
| 54064 | | |
| 54065 | | > delete sel |
| 54066 | | |
| 54067 | | > hide #!17 models |
| 54068 | | |
| 54069 | | > show #!17 models |
| 54070 | | |
| 54071 | | > show #!13 models |
| 54072 | | |
| 54073 | | > hide #!17 models |
| 54074 | | |
| 54075 | | > show #!17 models |
| 54076 | | |
| 54077 | | Drag select of 2 residues |
| 54078 | | |
| 54079 | | > delete sel |
| 54080 | | |
| 54081 | | > hide #!13 models |
| 54082 | | |
| 54083 | | > show #!13 models |
| 54084 | | |
| 54085 | | Drag select of 299 residues |
| 54086 | | |
| 54087 | | > select up |
| 54088 | | |
| 54089 | | 3058 atoms, 3120 bonds, 391 residues, 1 model selected |
| 54090 | | |
| 54091 | | > delete sel |
| 54092 | | |
| 54093 | | Drag select of 6 residues |
| 54094 | | Drag select of 8 residues |
| 54095 | | |
| 54096 | | > delete sel |
| 54097 | | |
| 54098 | | Drag select of 12 residues |
| 54099 | | |
| 54100 | | > delete sel |
| 54101 | | |
| 54102 | | > color #17 #004affff |
| 54103 | | |
| 54104 | | > show #!1 models |
| 54105 | | |
| 54106 | | > show #!3 models |
| 54107 | | |
| 54108 | | > hide #!1 models |
| 54109 | | |
| 54110 | | > show #!1 models |
| 54111 | | |
| 54112 | | > hide #!1 models |
| 54113 | | |
| 54114 | | > hide #!3 models |
| 54115 | | |
| 54116 | | Drag select of 5 residues |
| 54117 | | |
| 54118 | | > delete sel |
| 54119 | | |
| 54120 | | Drag select of 5 residues |
| 54121 | | |
| 54122 | | > delete sel |
| 54123 | | |
| 54124 | | Drag select of 3 residues |
| 54125 | | |
| 54126 | | > delete sel |
| 54127 | | |
| 54128 | | Drag select of 3 residues |
| 54129 | | |
| 54130 | | > delete sel |
| 54131 | | |
| 54132 | | > show #!1 models |
| 54133 | | |
| 54134 | | > fitmap #17 inMap #1 |
| 54135 | | |
| 54136 | | Fit molecule CopA-Q8CIE6.pdb (#17) to map |
| 54137 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1653 atoms |
| 54138 | | average map value = 0.009453, steps = 48 |
| 54139 | | shifted from previous position = 0.0862 |
| 54140 | | rotated from previous position = 1.38 degrees |
| 54141 | | atoms outside contour = 577, contour level = 0.0047281 |
| 54142 | | |
| 54143 | | Position of CopA-Q8CIE6.pdb (#17) relative to |
| 54144 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 54145 | | Matrix rotation and translation |
| 54146 | | -0.06845807 0.82084445 -0.56703428 198.78096995 |
| 54147 | | -0.30358441 -0.55855363 -0.77191602 282.52342968 |
| 54148 | | -0.95034204 0.11929889 0.28743308 272.74817735 |
| 54149 | | Axis 0.60010334 0.25810191 -0.75713895 |
| 54150 | | Axis point 291.53210163 126.85447772 0.00000000 |
| 54151 | | Rotation angle (degrees) 132.05080567 |
| 54152 | | Shift along axis -14.29930723 |
| 54153 | | |
| 54154 | | |
| 54155 | | > fitmap #17 inMap #1 |
| 54156 | | |
| 54157 | | Fit molecule CopA-Q8CIE6.pdb (#17) to map |
| 54158 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1653 atoms |
| 54159 | | average map value = 0.009453, steps = 40 |
| 54160 | | shifted from previous position = 0.00991 |
| 54161 | | rotated from previous position = 0.0527 degrees |
| 54162 | | atoms outside contour = 577, contour level = 0.0047281 |
| 54163 | | |
| 54164 | | Position of CopA-Q8CIE6.pdb (#17) relative to |
| 54165 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 54166 | | Matrix rotation and translation |
| 54167 | | -0.06755042 0.82094493 -0.56699768 198.78818114 |
| 54168 | | -0.30351587 -0.55826991 -0.77214819 282.52608291 |
| 54169 | | -0.95042888 0.11993386 0.28688118 272.77368705 |
| 54170 | | Axis 0.60045412 0.25808483 -0.75686661 |
| 54171 | | Axis point 291.71815224 126.83502087 0.00000000 |
| 54172 | | Rotation angle (degrees) 132.02613965 |
| 54173 | | Shift along axis -14.17441757 |
| 54174 | | |
| 54175 | | |
| 54176 | | > hide #!1 models |
| 54177 | | |
| 54178 | | Drag select of 3 residues |
| 54179 | | |
| 54180 | | > delete sel |
| 54181 | | |
| 54182 | | > show #!1 models |
| 54183 | | |
| 54184 | | > hide #!1 models |
| 54185 | | |
| 54186 | | Drag select of 12 residues |
| 54187 | | |
| 54188 | | > select clear |
| 54189 | | |
| 54190 | | > fitmap #17 inMap #1 |
| 54191 | | |
| 54192 | | Fit molecule CopA-Q8CIE6.pdb (#17) to map |
| 54193 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1629 atoms |
| 54194 | | average map value = 0.009463, steps = 44 |
| 54195 | | shifted from previous position = 0.132 |
| 54196 | | rotated from previous position = 1.12 degrees |
| 54197 | | atoms outside contour = 562, contour level = 0.0047281 |
| 54198 | | |
| 54199 | | Position of CopA-Q8CIE6.pdb (#17) relative to |
| 54200 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 54201 | | Matrix rotation and translation |
| 54202 | | -0.08657160 0.81843121 -0.56804551 198.83570444 |
| 54203 | | -0.29956180 -0.56518406 -0.76865448 282.36669779 |
| 54204 | | -0.95014109 0.10362109 0.29409961 272.49652777 |
| 54205 | | Axis 0.59395260 0.26017771 -0.76126728 |
| 54206 | | Axis point 288.02467807 127.91892222 0.00000000 |
| 54207 | | Rotation angle (degrees) 132.75212810 |
| 54208 | | Shift along axis -15.87818803 |
| 54209 | | |
| 54210 | | |
| 54211 | | > fitmap #17 inMap #1 |
| 54212 | | |
| 54213 | | Fit molecule CopA-Q8CIE6.pdb (#17) to map |
| 54214 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1629 atoms |
| 54215 | | average map value = 0.009463, steps = 44 |
| 54216 | | shifted from previous position = 0.0381 |
| 54217 | | rotated from previous position = 0.104 degrees |
| 54218 | | atoms outside contour = 563, contour level = 0.0047281 |
| 54219 | | |
| 54220 | | Position of CopA-Q8CIE6.pdb (#17) relative to |
| 54221 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 54222 | | Matrix rotation and translation |
| 54223 | | -0.08837560 0.81836583 -0.56786189 198.80999445 |
| 54224 | | -0.29937497 -0.56555704 -0.76845290 282.38827482 |
| 54225 | | -0.95003388 0.10209115 0.29497969 272.44395498 |
| 54226 | | Axis 0.59325832 0.26044255 -0.76171795 |
| 54227 | | Axis point 287.67565023 128.03192381 0.00000000 |
| 54228 | | Rotation angle (degrees) 132.80274633 |
| 54229 | | Shift along axis -16.03384414 |
| 54230 | | |
| 54231 | | |
| 54232 | | > show #!1 models |
| 54233 | | |
| 54234 | | > hide #!1 models |
| 54235 | | |
| 54236 | | > show #!1 models |
| 54237 | | |
| 54238 | | > hide #!1 models |
| 54239 | | |
| 54240 | | Drag select of 3 residues |
| 54241 | | |
| 54242 | | > delete sel |
| 54243 | | |
| 54244 | | > show #!1 models |
| 54245 | | |
| 54246 | | > show #!3 models |
| 54247 | | |
| 54248 | | > hide #!3 models |
| 54249 | | |
| 54250 | | > rename #17 CopA-Q8CIE6_solecoid_I592-.pdb |
| 54251 | | |
| 54252 | | > hide #!1 models |
| 54253 | | |
| 54254 | | > rename #17 CopA-Q8CIE6_solecoid_I592-N791.pdb |
| 54255 | | |
| 54256 | | > hide #!17 models |
| 54257 | | |
| 54258 | | > close #13 |
| 54259 | | |
| 54260 | | > rename #17 CopA-Q8CIE6_solenoid_I592-N791.pdb |
| 54261 | | |
| 54262 | | > show #!1 models |
| 54263 | | |
| 54264 | | > hide #!1 models |
| 54265 | | |
| 54266 | | > show #!1 models |
| 54267 | | |
| 54268 | | > hide #!27 models |
| 54269 | | |
| 54270 | | > show #!27 models |
| 54271 | | |
| 54272 | | > show #27.1 models |
| 54273 | | |
| 54274 | | > fitmap #27.1 inMap #1 |
| 54275 | | |
| 54276 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 54277 | | relion_locres_filtered_20240326_GT.mrc (#1) using 6538 atoms |
| 54278 | | average map value = 0.009129, steps = 28 |
| 54279 | | shifted from previous position = 0.0407 |
| 54280 | | rotated from previous position = 0.0452 degrees |
| 54281 | | atoms outside contour = 2197, contour level = 0.0047281 |
| 54282 | | |
| 54283 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to |
| 54284 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 54285 | | Matrix rotation and translation |
| 54286 | | 0.99559484 0.00374324 0.09368509 -80.52958620 |
| 54287 | | -0.00521737 0.99986633 0.01549493 -75.31400016 |
| 54288 | | -0.09361457 -0.01591546 0.99548130 -68.64550567 |
| 54289 | | Axis -0.16520792 0.98513204 -0.04712972 |
| 54290 | | Axis point -806.87142651 0.00000000 923.30838386 |
| 54291 | | Rotation angle (degrees) 5.45495891 |
| 54292 | | Shift along axis -57.65486622 |
| 54293 | | |
| 54294 | | |
| 54295 | | > fitmap #27.1 inMap #1 |
| 54296 | | |
| 54297 | | Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map |
| 54298 | | relion_locres_filtered_20240326_GT.mrc (#1) using 6538 atoms |
| 54299 | | average map value = 0.009129, steps = 28 |
| 54300 | | shifted from previous position = 0.0471 |
| 54301 | | rotated from previous position = 0.0446 degrees |
| 54302 | | atoms outside contour = 2199, contour level = 0.0047281 |
| 54303 | | |
| 54304 | | Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to |
| 54305 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 54306 | | Matrix rotation and translation |
| 54307 | | 0.99555306 0.00346629 0.09413872 -80.58795937 |
| 54308 | | -0.00500218 0.99985813 0.01608414 -75.45401159 |
| 54309 | | -0.09406962 -0.01648351 0.99542915 -68.55921561 |
| 54310 | | Axis -0.17033920 0.98438951 -0.04429282 |
| 54311 | | Axis point -800.70772442 0.00000000 922.29669395 |
| 54312 | | Rotation angle (degrees) 5.48565168 |
| 54313 | | Shift along axis -57.51216813 |
| 54314 | | |
| 54315 | | |
| 54316 | | > hide #!1 models |
| 54317 | | |
| 54318 | | > hide #27.1 models |
| 54319 | | |
| 54320 | | > show #!7 models |
| 54321 | | |
| 54322 | | > show #!3 models |
| 54323 | | |
| 54324 | | > hide #!3 models |
| 54325 | | |
| 54326 | | > show #!3 models |
| 54327 | | |
| 54328 | | > show #27.1 models |
| 54329 | | |
| 54330 | | > hide #27.1 models |
| 54331 | | |
| 54332 | | > show #27.1 models |
| 54333 | | |
| 54334 | | > hide #27.1 models |
| 54335 | | |
| 54336 | | > show #27.1 models |
| 54337 | | |
| 54338 | | > hide #27.1 models |
| 54339 | | |
| 54340 | | > hide #!7 models |
| 54341 | | |
| 54342 | | > hide #!3 models |
| 54343 | | |
| 54344 | | > show #32.1 models |
| 54345 | | |
| 54346 | | > show #!4 models |
| 54347 | | |
| 54348 | | > hide #!4 models |
| 54349 | | |
| 54350 | | > show #!4 models |
| 54351 | | |
| 54352 | | > hide #!4 models |
| 54353 | | |
| 54354 | | > show #!4 models |
| 54355 | | |
| 54356 | | > hide #32.1 models |
| 54357 | | |
| 54358 | | > hide #!4 models |
| 54359 | | |
| 54360 | | > show #!15 models |
| 54361 | | |
| 54362 | | > show #!16 models |
| 54363 | | |
| 54364 | | > hide #!15 models |
| 54365 | | |
| 54366 | | > show #!15 models |
| 54367 | | |
| 54368 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 54369 | | > dataset/Structure files/alphafold/CopB_ Q9JIF7.pdb" |
| 54370 | | |
| 54371 | | CopB_ Q9JIF7.pdb title: |
| 54372 | | Alphafold monomer V2.0 prediction for coatomer subunit β (Q9JIF7) [more |
| 54373 | | info...] |
| 54374 | | |
| 54375 | | Chain information for CopB_ Q9JIF7.pdb #13 |
| 54376 | | --- |
| 54377 | | Chain | Description | UniProt |
| 54378 | | A | coatomer subunit β | COPB_MOUSE 1-953 |
| 54379 | | |
| 54380 | | |
| 54381 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 54382 | | > dataset/Structure files/alphafold/CopB_ Q9JIF7.pdb" |
| 54383 | | |
| 54384 | | CopB_ Q9JIF7.pdb title: |
| 54385 | | Alphafold monomer V2.0 prediction for coatomer subunit β (Q9JIF7) [more |
| 54386 | | info...] |
| 54387 | | |
| 54388 | | Chain information for CopB_ Q9JIF7.pdb #18 |
| 54389 | | --- |
| 54390 | | Chain | Description | UniProt |
| 54391 | | A | coatomer subunit β | COPB_MOUSE 1-953 |
| 54392 | | |
| 54393 | | |
| 54394 | | > ui tool show Matchmaker |
| 54395 | | |
| 54396 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 54397 | | QTBUG which explains how to reproduce. |
| 54398 | | |
| 54399 | | > matchmaker #18 to #4 |
| 54400 | | |
| 54401 | | Parameters |
| 54402 | | --- |
| 54403 | | Chain pairing | bb |
| 54404 | | Alignment algorithm | Needleman-Wunsch |
| 54405 | | Similarity matrix | BLOSUM-62 |
| 54406 | | SS fraction | 0.3 |
| 54407 | | Gap open (HH/SS/other) | 18/18/6 |
| 54408 | | Gap extend | 1 |
| 54409 | | SS matrix | | | H | S | O |
| 54410 | | ---|---|---|--- |
| 54411 | | H | 6 | -9 | -6 |
| 54412 | | S | | 6 | -6 |
| 54413 | | O | | | 4 |
| 54414 | | Iteration cutoff | 2 |
| 54415 | | |
| 54416 | | Matchmaker CopB_Q9JIF7_P395-L953.pdb, chain A (#4) with CopB_ Q9JIF7.pdb, |
| 54417 | | chain A (#18), sequence alignment score = 4184.9 |
| 54418 | | RMSD between 418 pruned atom pairs is 0.845 angstroms; (across all 520 pairs: |
| 54419 | | 2.356) |
| 54420 | | |
| 54421 | | |
| 54422 | | > hide #!16 models |
| 54423 | | |
| 54424 | | > hide #!15 models |
| 54425 | | |
| 54426 | | > hide #13 models |
| 54427 | | |
| 54428 | | > close #13 |
| 54429 | | |
| 54430 | | > show #!1 models |
| 54431 | | |
| 54432 | | > hide #!1 models |
| 54433 | | |
| 54434 | | > show #!4 models |
| 54435 | | |
| 54436 | | > close #18 |
| 54437 | | |
| 54438 | | > show #!1 models |
| 54439 | | |
| 54440 | | > hide #!4 models |
| 54441 | | |
| 54442 | | > hide #!1 models |
| 54443 | | |
| 54444 | | > hide #!27 models |
| 54445 | | |
| 54446 | | > show #!27 models |
| 54447 | | |
| 54448 | | > show #32.2 models |
| 54449 | | |
| 54450 | | > color #32.2 #b55c00ff |
| 54451 | | |
| 54452 | | > show #8 models |
| 54453 | | |
| 54454 | | > hide #8 models |
| 54455 | | |
| 54456 | | > show #8 models |
| 54457 | | |
| 54458 | | > hide #8 models |
| 54459 | | |
| 54460 | | > show #8 models |
| 54461 | | |
| 54462 | | > hide #8 models |
| 54463 | | |
| 54464 | | > ui tool show Matchmaker |
| 54465 | | |
| 54466 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 54467 | | QTBUG which explains how to reproduce. |
| 54468 | | |
| 54469 | | > matchmaker #8 to #32.2 |
| 54470 | | |
| 54471 | | Parameters |
| 54472 | | --- |
| 54473 | | Chain pairing | bb |
| 54474 | | Alignment algorithm | Needleman-Wunsch |
| 54475 | | Similarity matrix | BLOSUM-62 |
| 54476 | | SS fraction | 0.3 |
| 54477 | | Gap open (HH/SS/other) | 18/18/6 |
| 54478 | | Gap extend | 1 |
| 54479 | | SS matrix | | | H | S | O |
| 54480 | | ---|---|---|--- |
| 54481 | | H | 6 | -9 | -6 |
| 54482 | | S | | 6 | -6 |
| 54483 | | O | | | 4 |
| 54484 | | Iteration cutoff | 2 |
| 54485 | | |
| 54486 | | Matchmaker 5mu7_Thermophila_beta_deltaCOPI.cif B, chain B (#32.2) with |
| 54487 | | CopD_Q5XJY5, chain A (#8), sequence alignment score = 518 |
| 54488 | | RMSD between 138 pruned atom pairs is 0.707 angstroms; (across all 150 pairs: |
| 54489 | | 1.098) |
| 54490 | | |
| 54491 | | |
| 54492 | | > show #8 models |
| 54493 | | |
| 54494 | | > hide #8 models |
| 54495 | | |
| 54496 | | > show #8 models |
| 54497 | | |
| 54498 | | > hide #8 models |
| 54499 | | |
| 54500 | | > show #8 models |
| 54501 | | |
| 54502 | | > show #!1 models |
| 54503 | | |
| 54504 | | > fitmap #8 inMap #1 |
| 54505 | | |
| 54506 | | Fit molecule CopD_Q5XJY5 (#8) to map relion_locres_filtered_20240326_GT.mrc |
| 54507 | | (#1) using 1462 atoms |
| 54508 | | average map value = 0.00841, steps = 84 |
| 54509 | | shifted from previous position = 1.47 |
| 54510 | | rotated from previous position = 5.16 degrees |
| 54511 | | atoms outside contour = 557, contour level = 0.0047281 |
| 54512 | | |
| 54513 | | Position of CopD_Q5XJY5 (#8) relative to |
| 54514 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 54515 | | Matrix rotation and translation |
| 54516 | | 0.07154755 0.98848917 0.13330464 -99.08181251 |
| 54517 | | -0.91244029 0.01087778 0.40906527 162.75356743 |
| 54518 | | 0.40290653 -0.15090014 0.90271562 445.95259972 |
| 54519 | | Axis -0.27999043 -0.13480467 -0.95049096 |
| 54520 | | Axis point -59.66961351 162.60931329 0.00000000 |
| 54521 | | Rotation angle (degrees) 90.42568446 |
| 54522 | | Shift along axis -418.07189440 |
| 54523 | | |
| 54524 | | |
| 54525 | | > fitmap #8 inMap #1 |
| 54526 | | |
| 54527 | | Fit molecule CopD_Q5XJY5 (#8) to map relion_locres_filtered_20240326_GT.mrc |
| 54528 | | (#1) using 1462 atoms |
| 54529 | | average map value = 0.00841, steps = 84 |
| 54530 | | shifted from previous position = 1.47 |
| 54531 | | rotated from previous position = 5.16 degrees |
| 54532 | | atoms outside contour = 557, contour level = 0.0047281 |
| 54533 | | |
| 54534 | | Position of CopD_Q5XJY5 (#8) relative to |
| 54535 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 54536 | | Matrix rotation and translation |
| 54537 | | 0.07154755 0.98848917 0.13330464 -99.08181251 |
| 54538 | | -0.91244029 0.01087778 0.40906527 162.75356743 |
| 54539 | | 0.40290653 -0.15090014 0.90271562 445.95259972 |
| 54540 | | Axis -0.27999043 -0.13480467 -0.95049096 |
| 54541 | | Axis point -59.66961351 162.60931329 0.00000000 |
| 54542 | | Rotation angle (degrees) 90.42568446 |
| 54543 | | Shift along axis -418.07189440 |
| 54544 | | |
| 54545 | | |
| 54546 | | > hide #!1 models |
| 54547 | | |
| 54548 | | > hide #8 models |
| 54549 | | |
| 54550 | | > show #32.1 models |
| 54551 | | |
| 54552 | | > show #8 models |
| 54553 | | |
| 54554 | | > show #!1 models |
| 54555 | | |
| 54556 | | > hide #!1 models |
| 54557 | | |
| 54558 | | > hide #32.1 models |
| 54559 | | |
| 54560 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 54561 | | > dataset/Chimera sessions/20240710_leaf_fitting_v41_labelled.cxs" |
| 54562 | | |
| 54563 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 54564 | | > dataset/Structure files/alphafold/CopD_Q5XJY5.pdb" |
| 54565 | | |
| 54566 | | CopD_Q5XJY5.pdb title: |
| 54567 | | Alphafold monomer V2.0 prediction for coatomer subunit δ (Q5XJY5) [more |
| 54568 | | info...] |
| 54569 | | |
| 54570 | | Chain information for CopD_Q5XJY5.pdb #13 |
| 54571 | | --- |
| 54572 | | Chain | Description | UniProt |
| 54573 | | A | coatomer subunit δ | COPD_MOUSE 1-511 |
| 54574 | | |
| 54575 | | |
| 54576 | | > ui tool show Matchmaker |
| 54577 | | |
| 54578 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 54579 | | QTBUG which explains how to reproduce. |
| 54580 | | |
| 54581 | | > matchmaker #13 to #8 |
| 54582 | | |
| 54583 | | Parameters |
| 54584 | | --- |
| 54585 | | Chain pairing | bb |
| 54586 | | Alignment algorithm | Needleman-Wunsch |
| 54587 | | Similarity matrix | BLOSUM-62 |
| 54588 | | SS fraction | 0.3 |
| 54589 | | Gap open (HH/SS/other) | 18/18/6 |
| 54590 | | Gap extend | 1 |
| 54591 | | SS matrix | | | H | S | O |
| 54592 | | ---|---|---|--- |
| 54593 | | H | 6 | -9 | -6 |
| 54594 | | S | | 6 | -6 |
| 54595 | | O | | | 4 |
| 54596 | | Iteration cutoff | 2 |
| 54597 | | |
| 54598 | | Matchmaker CopD_Q5XJY5, chain A (#8) with CopD_Q5XJY5.pdb, chain A (#13), |
| 54599 | | sequence alignment score = 2127.5 |
| 54600 | | RMSD between 179 pruned atom pairs is 0.000 angstroms; (across all 179 pairs: |
| 54601 | | 0.000) |
| 54602 | | |
| 54603 | | |
| 54604 | | > hide #8 models |
| 54605 | | |
| 54606 | | > hide #32.2 models |
| 54607 | | |
| 54608 | | > close #13 |
| 54609 | | |
| 54610 | | > show #!1 models |
| 54611 | | |
| 54612 | | > show #!9 models |
| 54613 | | |
| 54614 | | > hide #!9 models |
| 54615 | | |
| 54616 | | > show #!9 models |
| 54617 | | |
| 54618 | | > hide #!9 models |
| 54619 | | |
| 54620 | | > hide #!26.2 models |
| 54621 | | |
| 54622 | | > show #!26.2 models |
| 54623 | | |
| 54624 | | > hide #!26.1 models |
| 54625 | | |
| 54626 | | > hide #26.3 models |
| 54627 | | |
| 54628 | | > show #!9 models |
| 54629 | | |
| 54630 | | > show #!29 models |
| 54631 | | |
| 54632 | | > hide #!29 models |
| 54633 | | |
| 54634 | | > hide #!1 models |
| 54635 | | |
| 54636 | | > hide #!9 models |
| 54637 | | |
| 54638 | | > fitmap #26.2 inMap #1 |
| 54639 | | |
| 54640 | | Fit molecule 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#26.2) to map |
| 54641 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2069 atoms |
| 54642 | | average map value = 0.01291, steps = 56 |
| 54643 | | shifted from previous position = 0.0251 |
| 54644 | | rotated from previous position = 0.051 degrees |
| 54645 | | atoms outside contour = 608, contour level = 0.0047281 |
| 54646 | | |
| 54647 | | Position of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#26.2) relative to |
| 54648 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 54649 | | Matrix rotation and translation |
| 54650 | | -0.26733622 0.21032158 -0.94037023 331.60663228 |
| 54651 | | 0.69674895 0.71631482 -0.03786782 310.04890379 |
| 54652 | | 0.66563672 -0.66532541 -0.33803823 215.93057949 |
| 54653 | | Axis -0.35023598 -0.89644530 0.27151535 |
| 54654 | | Axis point -0.95000729 0.00000000 228.97636103 |
| 54655 | | Rotation angle (degrees) 116.39326055 |
| 54656 | | Shift along axis -335.45398968 |
| 54657 | | |
| 54658 | | |
| 54659 | | > fitmap #26.2 inMap #1 |
| 54660 | | |
| 54661 | | Fit molecule 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#26.2) to map |
| 54662 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2069 atoms |
| 54663 | | average map value = 0.01291, steps = 36 |
| 54664 | | shifted from previous position = 0.00374 |
| 54665 | | rotated from previous position = 0.0122 degrees |
| 54666 | | atoms outside contour = 609, contour level = 0.0047281 |
| 54667 | | |
| 54668 | | Position of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#26.2) relative to |
| 54669 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 54670 | | Matrix rotation and translation |
| 54671 | | -0.26717041 0.21033229 -0.94041496 331.60392234 |
| 54672 | | 0.69686519 0.71620571 -0.03779244 310.03972167 |
| 54673 | | 0.66558160 -0.66543948 -0.33792223 215.92559862 |
| 54674 | | Axis -0.35032496 -0.89639662 0.27156126 |
| 54675 | | Axis point -0.98873363 0.00000000 228.98410216 |
| 54676 | | Rotation angle (degrees) 116.38773736 |
| 54677 | | Shift along axis -335.45066247 |
| 54678 | | |
| 54679 | | |
| 54680 | | > fitmap #26.2 inMap #1 |
| 54681 | | |
| 54682 | | Fit molecule 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#26.2) to map |
| 54683 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2069 atoms |
| 54684 | | average map value = 0.01291, steps = 28 |
| 54685 | | shifted from previous position = 0.0326 |
| 54686 | | rotated from previous position = 0.0234 degrees |
| 54687 | | atoms outside contour = 610, contour level = 0.0047281 |
| 54688 | | |
| 54689 | | Position of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#26.2) relative to |
| 54690 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 54691 | | Matrix rotation and translation |
| 54692 | | -0.26697217 0.21065641 -0.94039871 331.59657938 |
| 54693 | | 0.69706188 0.71602994 -0.03749454 310.03682210 |
| 54694 | | 0.66545517 -0.66552610 -0.33800062 215.90836829 |
| 54695 | | Axis -0.35054501 -0.89633087 0.27149434 |
| 54696 | | Axis point -1.03095250 0.00000000 228.93362673 |
| 54697 | | Rotation angle (degrees) 116.38952549 |
| 54698 | | Shift along axis -335.51719967 |
| 54699 | | |
| 54700 | | |
| 54701 | | > fitmap #26.2 inMap #1 |
| 54702 | | |
| 54703 | | Fit molecule 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#26.2) to map |
| 54704 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2069 atoms |
| 54705 | | average map value = 0.01291, steps = 28 |
| 54706 | | shifted from previous position = 0.00445 |
| 54707 | | rotated from previous position = 0.0137 degrees |
| 54708 | | atoms outside contour = 610, contour level = 0.0047281 |
| 54709 | | |
| 54710 | | Position of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#26.2) relative to |
| 54711 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 54712 | | Matrix rotation and translation |
| 54713 | | -0.26679252 0.21056017 -0.94047124 331.58927289 |
| 54714 | | 0.69714625 0.71594888 -0.03747386 310.03464837 |
| 54715 | | 0.66543884 -0.66564375 -0.33780104 215.89715592 |
| 54716 | | Axis -0.35059328 -0.89628824 0.27157273 |
| 54717 | | Axis point -1.07395213 0.00000000 228.95451697 |
| 54718 | | Rotation angle (degrees) 116.37999043 |
| 54719 | | Shift along axis -335.50160010 |
| 54720 | | |
| 54721 | | |
| 54722 | | > fitmap #26.2 inMap #1 |
| 54723 | | |
| 54724 | | Fit molecule 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#26.2) to map |
| 54725 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2069 atoms |
| 54726 | | average map value = 0.01291, steps = 28 |
| 54727 | | shifted from previous position = 0.0267 |
| 54728 | | rotated from previous position = 0.0146 degrees |
| 54729 | | atoms outside contour = 611, contour level = 0.0047281 |
| 54730 | | |
| 54731 | | Position of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#26.2) relative to |
| 54732 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 54733 | | Matrix rotation and translation |
| 54734 | | -0.26667615 0.21041952 -0.94053572 331.59520251 |
| 54735 | | 0.69725196 0.71584216 -0.03754595 310.01061083 |
| 54736 | | 0.66537473 -0.66580299 -0.33761345 215.89823911 |
| 54737 | | Axis -0.35062278 -0.89623952 0.27169540 |
| 54738 | | Axis point -1.10328148 0.00000000 228.99319129 |
| 54739 | | Rotation angle (degrees) 116.37368341 |
| 54740 | | Shift along axis -335.45003587 |
| 54741 | | |
| 54742 | | |
| 54743 | | > show #!9 models |
| 54744 | | |
| 54745 | | > hide #!9 models |
| 54746 | | |
| 54747 | | > show #!9 models |
| 54748 | | |
| 54749 | | > hide #!26.2 models |
| 54750 | | |
| 54751 | | Drag select of 2 pseudobonds |
| 54752 | | |
| 54753 | | > delete sel |
| 54754 | | |
| 54755 | | > select add #9 |
| 54756 | | |
| 54757 | | 2173 atoms, 2202 bonds, 4 pseudobonds, 277 residues, 2 models selected |
| 54758 | | |
| 54759 | | > select subtract #9 |
| 54760 | | |
| 54761 | | Nothing selected |
| 54762 | | Drag select of 1 pseudobonds |
| 54763 | | |
| 54764 | | > delete sel |
| 54765 | | |
| 54766 | | [Repeated 1 time(s)] |
| 54767 | | |
| 54768 | | > show #!26.2 models |
| 54769 | | |
| 54770 | | > hide #!9 models |
| 54771 | | |
| 54772 | | > select add #9 |
| 54773 | | |
| 54774 | | 2173 atoms, 2202 bonds, 4 pseudobonds, 277 residues, 2 models selected |
| 54775 | | |
| 54776 | | > show #!9 models |
| 54777 | | |
| 54778 | | > select subtract #9 |
| 54779 | | |
| 54780 | | Nothing selected |
| 54781 | | |
| 54782 | | > hide #!26.2 models |
| 54783 | | |
| 54784 | | > show #!26.2 models |
| 54785 | | |
| 54786 | | > rename #8 CopD_Q5XJY5_M1-R175 |
| 54787 | | |
| 54788 | | > hide #!9 models |
| 54789 | | |
| 54790 | | > show #!9 models |
| 54791 | | |
| 54792 | | > hide #!26.2 models |
| 54793 | | |
| 54794 | | > rename #9 CopG_Q9QZE5_L311-T583 |
| 54795 | | |
| 54796 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 54797 | | > dataset/Structure files/alphafold/CopG1_ Q9QZE5.pdb" |
| 54798 | | |
| 54799 | | CopG1_ Q9QZE5.pdb title: |
| 54800 | | Alphafold monomer V2.0 prediction for coatomer subunit γ-1 (Q9QZE5) [more |
| 54801 | | info...] |
| 54802 | | |
| 54803 | | Chain information for CopG1_ Q9QZE5.pdb #13 |
| 54804 | | --- |
| 54805 | | Chain | Description | UniProt |
| 54806 | | A | coatomer subunit γ-1 | COPG1_MOUSE 1-874 |
| 54807 | | |
| 54808 | | |
| 54809 | | > color #13 #24fa00ff |
| 54810 | | |
| 54811 | | > ui tool show Matchmaker |
| 54812 | | |
| 54813 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 54814 | | QTBUG which explains how to reproduce. |
| 54815 | | |
| 54816 | | > matchmaker #13 to #9 |
| 54817 | | |
| 54818 | | Parameters |
| 54819 | | --- |
| 54820 | | Chain pairing | bb |
| 54821 | | Alignment algorithm | Needleman-Wunsch |
| 54822 | | Similarity matrix | BLOSUM-62 |
| 54823 | | SS fraction | 0.3 |
| 54824 | | Gap open (HH/SS/other) | 18/18/6 |
| 54825 | | Gap extend | 1 |
| 54826 | | SS matrix | | | H | S | O |
| 54827 | | ---|---|---|--- |
| 54828 | | H | 6 | -9 | -6 |
| 54829 | | S | | 6 | -6 |
| 54830 | | O | | | 4 |
| 54831 | | Iteration cutoff | 2 |
| 54832 | | |
| 54833 | | Matchmaker CopG_Q9QZE5_L311-T583, chain A (#9) with CopG1_ Q9QZE5.pdb, chain A |
| 54834 | | (#13), sequence alignment score = 3547.2 |
| 54835 | | RMSD between 276 pruned atom pairs is 0.730 angstroms; (across all 277 pairs: |
| 54836 | | 2.377) |
| 54837 | | |
| 54838 | | |
| 54839 | | > hide #!9 models |
| 54840 | | |
| 54841 | | > show #!9 models |
| 54842 | | |
| 54843 | | > hide #!9 models |
| 54844 | | |
| 54845 | | > show #!9 models |
| 54846 | | |
| 54847 | | > hide #!9 models |
| 54848 | | |
| 54849 | | > show #!9 models |
| 54850 | | |
| 54851 | | > hide #!9 models |
| 54852 | | |
| 54853 | | > show #!9 models |
| 54854 | | |
| 54855 | | > hide #!9 models |
| 54856 | | |
| 54857 | | > hide #13 models |
| 54858 | | |
| 54859 | | > show #13 models |
| 54860 | | |
| 54861 | | > show #!1 models |
| 54862 | | |
| 54863 | | > show #!9 models |
| 54864 | | |
| 54865 | | > hide #!9 models |
| 54866 | | |
| 54867 | | > show #!9 models |
| 54868 | | |
| 54869 | | > hide #!1 models |
| 54870 | | |
| 54871 | | > show #!1 models |
| 54872 | | |
| 54873 | | > hide #13 models |
| 54874 | | |
| 54875 | | > show #!26.2 models |
| 54876 | | |
| 54877 | | > hide #!26.2 models |
| 54878 | | |
| 54879 | | > show #!26.2 models |
| 54880 | | |
| 54881 | | > show #!29 models |
| 54882 | | |
| 54883 | | > hide #!29 models |
| 54884 | | |
| 54885 | | > show #!29 models |
| 54886 | | |
| 54887 | | > show #13 models |
| 54888 | | |
| 54889 | | > hide #!1 models |
| 54890 | | |
| 54891 | | > hide #!9 models |
| 54892 | | |
| 54893 | | > ui tool show Matchmaker |
| 54894 | | |
| 54895 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 54896 | | QTBUG which explains how to reproduce. |
| 54897 | | |
| 54898 | | > matchmaker #13 to #29 |
| 54899 | | |
| 54900 | | Parameters |
| 54901 | | --- |
| 54902 | | Chain pairing | bb |
| 54903 | | Alignment algorithm | Needleman-Wunsch |
| 54904 | | Similarity matrix | BLOSUM-62 |
| 54905 | | SS fraction | 0.3 |
| 54906 | | Gap open (HH/SS/other) | 18/18/6 |
| 54907 | | Gap extend | 1 |
| 54908 | | SS matrix | | | H | S | O |
| 54909 | | ---|---|---|--- |
| 54910 | | H | 6 | -9 | -6 |
| 54911 | | S | | 6 | -6 |
| 54912 | | O | | | 4 |
| 54913 | | Iteration cutoff | 2 |
| 54914 | | |
| 54915 | | Matchmaker copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B, chain B (#29) |
| 54916 | | with CopG1_ Q9QZE5.pdb, chain A (#13), sequence alignment score = 1223.2 |
| 54917 | | RMSD between 214 pruned atom pairs is 0.825 angstroms; (across all 264 pairs: |
| 54918 | | 2.836) |
| 54919 | | |
| 54920 | | |
| 54921 | | > show #!1 models |
| 54922 | | |
| 54923 | | > show #!7 models |
| 54924 | | |
| 54925 | | > hide #!7 models |
| 54926 | | |
| 54927 | | > hide #13 models |
| 54928 | | |
| 54929 | | > show #13 models |
| 54930 | | |
| 54931 | | > hide #13 models |
| 54932 | | |
| 54933 | | > hide #!26.2 models |
| 54934 | | |
| 54935 | | > show #!2 models |
| 54936 | | |
| 54937 | | > show #!3 models |
| 54938 | | |
| 54939 | | > hide #!3 models |
| 54940 | | |
| 54941 | | > show #!3 models |
| 54942 | | |
| 54943 | | > hide #!3 models |
| 54944 | | |
| 54945 | | > hide #!2 models |
| 54946 | | |
| 54947 | | > show #!17 models |
| 54948 | | |
| 54949 | | > hide #!17 models |
| 54950 | | |
| 54951 | | > show #!26.2 models |
| 54952 | | |
| 54953 | | > show #13 models |
| 54954 | | |
| 54955 | | > hide #!26.2 models |
| 54956 | | |
| 54957 | | > hide #13 models |
| 54958 | | |
| 54959 | | > show #!15 models |
| 54960 | | |
| 54961 | | > hide #!15 models |
| 54962 | | |
| 54963 | | > show #!17 models |
| 54964 | | |
| 54965 | | > hide #!17 models |
| 54966 | | |
| 54967 | | > show #!26.2 models |
| 54968 | | |
| 54969 | | > hide #!26.2 models |
| 54970 | | |
| 54971 | | > show #!26.2 models |
| 54972 | | |
| 54973 | | > show #!9 models |
| 54974 | | |
| 54975 | | > show #13 models |
| 54976 | | |
| 54977 | | > show #8 models |
| 54978 | | |
| 54979 | | > show #!2 models |
| 54980 | | |
| 54981 | | > show #!3 models |
| 54982 | | |
| 54983 | | > show #!4 models |
| 54984 | | |
| 54985 | | > show #5 models |
| 54986 | | |
| 54987 | | > show #6 models |
| 54988 | | |
| 54989 | | > show #!7 models |
| 54990 | | |
| 54991 | | > hide #13 models |
| 54992 | | |
| 54993 | | > hide #!9 models |
| 54994 | | |
| 54995 | | > hide #!26.2 models |
| 54996 | | |
| 54997 | | > show #!25.6 models |
| 54998 | | |
| 54999 | | > ui tool show Matchmaker |
| 55000 | | |
| 55001 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 55002 | | QTBUG which explains how to reproduce. |
| 55003 | | |
| 55004 | | > matchmaker #!25.6 to #29 |
| 55005 | | |
| 55006 | | Parameters |
| 55007 | | --- |
| 55008 | | Chain pairing | bb |
| 55009 | | Alignment algorithm | Needleman-Wunsch |
| 55010 | | Similarity matrix | BLOSUM-62 |
| 55011 | | SS fraction | 0.3 |
| 55012 | | Gap open (HH/SS/other) | 18/18/6 |
| 55013 | | Gap extend | 1 |
| 55014 | | SS matrix | | | H | S | O |
| 55015 | | ---|---|---|--- |
| 55016 | | H | 6 | -9 | -6 |
| 55017 | | S | | 6 | -6 |
| 55018 | | O | | | 4 |
| 55019 | | Iteration cutoff | 2 |
| 55020 | | |
| 55021 | | Matchmaker copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B, chain B (#29) |
| 55022 | | with 5nzr_COPI_coat_leaf_2017.cif G, chain G (#25.6), sequence alignment score |
| 55023 | | = 1180.9 |
| 55024 | | RMSD between 127 pruned atom pairs is 1.367 angstroms; (across all 263 pairs: |
| 55025 | | 3.108) |
| 55026 | | |
| 55027 | | |
| 55028 | | > hide #!1 models |
| 55029 | | |
| 55030 | | > show #!1 models |
| 55031 | | |
| 55032 | | > hide #!2 models |
| 55033 | | |
| 55034 | | > hide #!3 models |
| 55035 | | |
| 55036 | | > hide #!4 models |
| 55037 | | |
| 55038 | | > hide #5 models |
| 55039 | | |
| 55040 | | > hide #6 models |
| 55041 | | |
| 55042 | | > hide #!7 models |
| 55043 | | |
| 55044 | | > hide #8 models |
| 55045 | | |
| 55046 | | > show #13 models |
| 55047 | | |
| 55048 | | > hide #!1 models |
| 55049 | | |
| 55050 | | > hide #13 models |
| 55051 | | |
| 55052 | | > hide #!25.6 models |
| 55053 | | |
| 55054 | | > show #!25.6 models |
| 55055 | | |
| 55056 | | > hide #!25.6 models |
| 55057 | | |
| 55058 | | > show #!25.6 models |
| 55059 | | |
| 55060 | | > hide #!29 models |
| 55061 | | |
| 55062 | | > show #13 models |
| 55063 | | |
| 55064 | | > hide #13 models |
| 55065 | | |
| 55066 | | > show #13 models |
| 55067 | | |
| 55068 | | > hide #13 models |
| 55069 | | |
| 55070 | | > show #13 models |
| 55071 | | |
| 55072 | | > hide #13 models |
| 55073 | | |
| 55074 | | > show #13 models |
| 55075 | | |
| 55076 | | > hide #13 models |
| 55077 | | |
| 55078 | | > show #13 models |
| 55079 | | |
| 55080 | | > hide #13 models |
| 55081 | | |
| 55082 | | > show #13 models |
| 55083 | | |
| 55084 | | > hide #13 models |
| 55085 | | |
| 55086 | | > show #13 models |
| 55087 | | |
| 55088 | | > hide #!25.6 models |
| 55089 | | |
| 55090 | | > hide #13 models |
| 55091 | | |
| 55092 | | > show #!9 models |
| 55093 | | |
| 55094 | | > show #13 models |
| 55095 | | |
| 55096 | | > ui tool show Matchmaker |
| 55097 | | |
| 55098 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 55099 | | QTBUG which explains how to reproduce. |
| 55100 | | |
| 55101 | | > matchmaker #13 to #9 |
| 55102 | | |
| 55103 | | Parameters |
| 55104 | | --- |
| 55105 | | Chain pairing | bb |
| 55106 | | Alignment algorithm | Needleman-Wunsch |
| 55107 | | Similarity matrix | BLOSUM-62 |
| 55108 | | SS fraction | 0.3 |
| 55109 | | Gap open (HH/SS/other) | 18/18/6 |
| 55110 | | Gap extend | 1 |
| 55111 | | SS matrix | | | H | S | O |
| 55112 | | ---|---|---|--- |
| 55113 | | H | 6 | -9 | -6 |
| 55114 | | S | | 6 | -6 |
| 55115 | | O | | | 4 |
| 55116 | | Iteration cutoff | 2 |
| 55117 | | |
| 55118 | | Matchmaker CopG_Q9QZE5_L311-T583, chain A (#9) with CopG1_ Q9QZE5.pdb, chain A |
| 55119 | | (#13), sequence alignment score = 3547.2 |
| 55120 | | RMSD between 276 pruned atom pairs is 0.730 angstroms; (across all 277 pairs: |
| 55121 | | 2.377) |
| 55122 | | |
| 55123 | | |
| 55124 | | > hide #!9 models |
| 55125 | | |
| 55126 | | > show #!9 models |
| 55127 | | |
| 55128 | | > hide #!9 models |
| 55129 | | |
| 55130 | | Drag select of 140 residues |
| 55131 | | |
| 55132 | | > select up |
| 55133 | | |
| 55134 | | 1252 atoms, 1269 bonds, 161 residues, 1 model selected |
| 55135 | | |
| 55136 | | > delete sel |
| 55137 | | |
| 55138 | | > show #!9 models |
| 55139 | | |
| 55140 | | > hide #!9 models |
| 55141 | | |
| 55142 | | > show #!9 models |
| 55143 | | |
| 55144 | | > hide #!9 models |
| 55145 | | |
| 55146 | | > show #!9 models |
| 55147 | | |
| 55148 | | > hide #!9 models |
| 55149 | | |
| 55150 | | Drag select of 129 residues, 1 pseudobonds |
| 55151 | | |
| 55152 | | > delete sel |
| 55153 | | |
| 55154 | | > show #!9 models |
| 55155 | | |
| 55156 | | > hide #!9 models |
| 55157 | | |
| 55158 | | > show #!9 models |
| 55159 | | |
| 55160 | | > hide #!9 models |
| 55161 | | |
| 55162 | | > show #!9 models |
| 55163 | | |
| 55164 | | > hide #!9 models |
| 55165 | | |
| 55166 | | Drag select of 52 residues |
| 55167 | | |
| 55168 | | > select up |
| 55169 | | |
| 55170 | | 437 atoms, 438 bonds, 56 residues, 1 model selected |
| 55171 | | |
| 55172 | | > select down |
| 55173 | | |
| 55174 | | 413 atoms, 52 residues, 1 model selected |
| 55175 | | |
| 55176 | | > select up |
| 55177 | | |
| 55178 | | 437 atoms, 438 bonds, 56 residues, 1 model selected |
| 55179 | | Drag select of 68 residues, 1 pseudobonds |
| 55180 | | |
| 55181 | | > select up |
| 55182 | | |
| 55183 | | 580 atoms, 584 bonds, 1 pseudobond, 77 residues, 2 models selected |
| 55184 | | |
| 55185 | | > delete sel |
| 55186 | | |
| 55187 | | > show #!9 models |
| 55188 | | |
| 55189 | | > hide #!9 models |
| 55190 | | |
| 55191 | | > show #!9 models |
| 55192 | | |
| 55193 | | > hide #!9 models |
| 55194 | | |
| 55195 | | > show #!9 models |
| 55196 | | |
| 55197 | | > hide #!9 models |
| 55198 | | |
| 55199 | | > show #!9 models |
| 55200 | | |
| 55201 | | > hide #!9 models |
| 55202 | | |
| 55203 | | Drag select of 101 residues |
| 55204 | | |
| 55205 | | > select clear |
| 55206 | | |
| 55207 | | Drag select of 193 residues |
| 55208 | | |
| 55209 | | > select down |
| 55210 | | |
| 55211 | | 1544 atoms, 193 residues, 1 model selected |
| 55212 | | |
| 55213 | | > select up |
| 55214 | | |
| 55215 | | 1595 atoms, 1619 bonds, 200 residues, 1 model selected |
| 55216 | | |
| 55217 | | > select down |
| 55218 | | |
| 55219 | | 1544 atoms, 193 residues, 1 model selected |
| 55220 | | Drag select of 165 residues |
| 55221 | | |
| 55222 | | > select up |
| 55223 | | |
| 55224 | | 1436 atoms, 1456 bonds, 180 residues, 1 model selected |
| 55225 | | |
| 55226 | | > delete sel |
| 55227 | | |
| 55228 | | > select clear |
| 55229 | | |
| 55230 | | [Repeated 2 time(s)] |
| 55231 | | |
| 55232 | | > show #!9 models |
| 55233 | | |
| 55234 | | > hide #!9 models |
| 55235 | | |
| 55236 | | > show #!9 models |
| 55237 | | |
| 55238 | | > hide #!9 models |
| 55239 | | |
| 55240 | | Drag select of 3 residues |
| 55241 | | |
| 55242 | | > delete sel |
| 55243 | | |
| 55244 | | Drag select of 17 residues |
| 55245 | | |
| 55246 | | > select clear |
| 55247 | | |
| 55248 | | Drag select of 8 residues |
| 55249 | | |
| 55250 | | > select up |
| 55251 | | |
| 55252 | | 103 atoms, 104 bonds, 13 residues, 1 model selected |
| 55253 | | |
| 55254 | | > delete sel |
| 55255 | | |
| 55256 | | Drag select of 1 residues |
| 55257 | | Drag select of 2 residues |
| 55258 | | [Repeated 1 time(s)] |
| 55259 | | |
| 55260 | | > select up |
| 55261 | | |
| 55262 | | 98 atoms, 99 bonds, 12 residues, 1 model selected |
| 55263 | | |
| 55264 | | > delete sel |
| 55265 | | |
| 55266 | | > show #!9 models |
| 55267 | | |
| 55268 | | > hide #!9 models |
| 55269 | | |
| 55270 | | > show #!1 models |
| 55271 | | |
| 55272 | | > select add #13 |
| 55273 | | |
| 55274 | | 2328 atoms, 2373 bonds, 299 residues, 1 model selected |
| 55275 | | Drag select of 1 relion_locres_filtered_20240326_GT.mrc |
| 55276 | | Drag select of 1 relion_locres_filtered_20240326_GT.mrc , 3 residues |
| 55277 | | |
| 55278 | | > select subtract #1 |
| 55279 | | |
| 55280 | | 27 atoms, 3 residues, 1 model selected |
| 55281 | | |
| 55282 | | > ui mousemode right "translate selected models" |
| 55283 | | |
| 55284 | | > view matrix models |
| 55285 | | > #13,0.26248,-0.32251,-0.90944,345.14,0.81049,-0.43779,0.38917,383.4,-0.52366,-0.83924,0.14648,353.45 |
| 55286 | | |
| 55287 | | > view matrix models |
| 55288 | | > #13,0.26248,-0.32251,-0.90944,352.18,0.81049,-0.43779,0.38917,384.15,-0.52366,-0.83924,0.14648,347.38 |
| 55289 | | |
| 55290 | | > ui mousemode right "rotate selected models" |
| 55291 | | |
| 55292 | | > view matrix models |
| 55293 | | > #13,0.20094,-0.82826,0.52308,353.56,0.46419,-0.38971,-0.7954,372.84,0.86264,0.40263,0.30616,383.21 |
| 55294 | | |
| 55295 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 55296 | | QTBUG which explains how to reproduce. |
| 55297 | | |
| 55298 | | > view matrix models |
| 55299 | | > #13,-0.6819,-0.58472,0.43944,345.73,-0.64001,0.18612,-0.74548,367.96,0.35411,-0.7896,-0.50114,354.56 |
| 55300 | | |
| 55301 | | > view matrix models |
| 55302 | | > #13,-0.66738,-0.63667,0.38634,344.81,-0.58717,0.13074,-0.79884,367.46,0.45808,-0.75997,-0.46109,356.52 |
| 55303 | | |
| 55304 | | > fitmap #13 inMap #1 |
| 55305 | | |
| 55306 | | Fit molecule CopG1_ Q9QZE5.pdb (#13) to map |
| 55307 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2328 atoms |
| 55308 | | average map value = 0.005846, steps = 152 |
| 55309 | | shifted from previous position = 18.7 |
| 55310 | | rotated from previous position = 34.7 degrees |
| 55311 | | atoms outside contour = 1035, contour level = 0.0047281 |
| 55312 | | |
| 55313 | | Position of CopG1_ Q9QZE5.pdb (#13) relative to |
| 55314 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 55315 | | Matrix rotation and translation |
| 55316 | | -0.46400453 -0.87604818 0.13129885 283.29510646 |
| 55317 | | -0.79478126 0.34625888 -0.49842507 304.63145454 |
| 55318 | | 0.39118098 -0.33562535 -0.85693236 272.46239451 |
| 55319 | | Axis 0.51316106 -0.81917459 0.25616151 |
| 55320 | | Axis point 223.36083300 0.00000000 198.52241567 |
| 55321 | | Rotation angle (degrees) 170.87294058 |
| 55322 | | Shift along axis -34.37594886 |
| 55323 | | |
| 55324 | | |
| 55325 | | > select add #13 |
| 55326 | | |
| 55327 | | 2328 atoms, 2373 bonds, 299 residues, 1 model selected |
| 55328 | | |
| 55329 | | > ui tool show Matchmaker |
| 55330 | | |
| 55331 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 55332 | | QTBUG which explains how to reproduce. |
| 55333 | | |
| 55334 | | > matchmaker #!13 to #25.6 |
| 55335 | | |
| 55336 | | Parameters |
| 55337 | | --- |
| 55338 | | Chain pairing | bb |
| 55339 | | Alignment algorithm | Needleman-Wunsch |
| 55340 | | Similarity matrix | BLOSUM-62 |
| 55341 | | SS fraction | 0.3 |
| 55342 | | Gap open (HH/SS/other) | 18/18/6 |
| 55343 | | Gap extend | 1 |
| 55344 | | SS matrix | | | H | S | O |
| 55345 | | ---|---|---|--- |
| 55346 | | H | 6 | -9 | -6 |
| 55347 | | S | | 6 | -6 |
| 55348 | | O | | | 4 |
| 55349 | | Iteration cutoff | 2 |
| 55350 | | |
| 55351 | | Matchmaker 5nzr_COPI_coat_leaf_2017.cif G, chain G (#25.6) with CopG1_ |
| 55352 | | Q9QZE5.pdb, chain A (#13), sequence alignment score = 3073 |
| 55353 | | RMSD between 123 pruned atom pairs is 1.312 angstroms; (across all 269 pairs: |
| 55354 | | 3.600) |
| 55355 | | |
| 55356 | | |
| 55357 | | > select subtract #13 |
| 55358 | | |
| 55359 | | Nothing selected |
| 55360 | | |
| 55361 | | > hide #!13 models |
| 55362 | | |
| 55363 | | > show #!13 models |
| 55364 | | |
| 55365 | | > fitmap #13 inMap #1 |
| 55366 | | |
| 55367 | | Fit molecule CopG1_ Q9QZE5.pdb (#13) to map |
| 55368 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2328 atoms |
| 55369 | | average map value = 0.004732, steps = 72 |
| 55370 | | shifted from previous position = 2.67 |
| 55371 | | rotated from previous position = 6.72 degrees |
| 55372 | | atoms outside contour = 1293, contour level = 0.0047281 |
| 55373 | | |
| 55374 | | Position of CopG1_ Q9QZE5.pdb (#13) relative to |
| 55375 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 55376 | | Matrix rotation and translation |
| 55377 | | -0.18707219 0.85236259 -0.48834620 272.23506983 |
| 55378 | | 0.06514904 -0.48526289 -0.87193780 156.24354137 |
| 55379 | | -0.98018346 -0.19493060 0.03524859 290.05062704 |
| 55380 | | Axis 0.58927078 0.42809784 -0.68519499 |
| 55381 | | Axis point 294.03599204 109.85965168 0.00000000 |
| 55382 | | Rotation angle (degrees) 144.93923178 |
| 55383 | | Shift along axis 28.56645803 |
| 55384 | | |
| 55385 | | |
| 55386 | | > hide #!13 models |
| 55387 | | |
| 55388 | | > show #!13 models |
| 55389 | | |
| 55390 | | > hide #!1 models |
| 55391 | | |
| 55392 | | > show #!25.6 models |
| 55393 | | |
| 55394 | | > show #!29 models |
| 55395 | | |
| 55396 | | > hide #!29 models |
| 55397 | | |
| 55398 | | > hide #!25.6 models |
| 55399 | | |
| 55400 | | > show #!26.2 models |
| 55401 | | |
| 55402 | | > hide #!26.2 models |
| 55403 | | |
| 55404 | | > show #!1 models |
| 55405 | | |
| 55406 | | > ui mousemode right select |
| 55407 | | |
| 55408 | | > hide #!1 models |
| 55409 | | |
| 55410 | | Drag select of 8 residues |
| 55411 | | |
| 55412 | | > select up |
| 55413 | | |
| 55414 | | 215 atoms, 218 bonds, 30 residues, 1 model selected |
| 55415 | | Drag select of 14 residues |
| 55416 | | |
| 55417 | | > select up |
| 55418 | | |
| 55419 | | 238 atoms, 241 bonds, 33 residues, 1 model selected |
| 55420 | | |
| 55421 | | > delete sel |
| 55422 | | |
| 55423 | | > fitmap #13 inMap #1 |
| 55424 | | |
| 55425 | | Fit molecule CopG1_ Q9QZE5.pdb (#13) to map |
| 55426 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2090 atoms |
| 55427 | | average map value = 0.005123, steps = 36 |
| 55428 | | shifted from previous position = 0.196 |
| 55429 | | rotated from previous position = 0.651 degrees |
| 55430 | | atoms outside contour = 1054, contour level = 0.0047281 |
| 55431 | | |
| 55432 | | Position of CopG1_ Q9QZE5.pdb (#13) relative to |
| 55433 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 55434 | | Matrix rotation and translation |
| 55435 | | -0.19744764 0.85137415 -0.48597993 272.26620708 |
| 55436 | | 0.06847691 -0.48255036 -0.87318731 156.25250448 |
| 55437 | | -0.97791889 -0.20568718 0.03697896 289.87675959 |
| 55438 | | Axis 0.58532639 0.43137797 -0.68651734 |
| 55439 | | Axis point 292.60102451 110.83100436 0.00000000 |
| 55440 | | Rotation angle (degrees) 145.23618902 |
| 55441 | | Shift along axis 27.76306241 |
| 55442 | | |
| 55443 | | |
| 55444 | | > show #!1 models |
| 55445 | | |
| 55446 | | > rename #13 "CopG1_ Q9QZE5_R609-G874.pdb" |
| 55447 | | |
| 55448 | | > hide #!13 models |
| 55449 | | |
| 55450 | | > show #!13 models |
| 55451 | | |
| 55452 | | > hide #!13 models |
| 55453 | | |
| 55454 | | > combine #9 |
| 55455 | | |
| 55456 | | > hide #!18 models |
| 55457 | | |
| 55458 | | > show #!18 models |
| 55459 | | |
| 55460 | | > show #!9 models |
| 55461 | | |
| 55462 | | > hide #!9 models |
| 55463 | | |
| 55464 | | > show #!9 models |
| 55465 | | |
| 55466 | | > hide #!9 models |
| 55467 | | |
| 55468 | | > hide #!1 models |
| 55469 | | |
| 55470 | | > hide #!18 models |
| 55471 | | |
| 55472 | | > show #!18 models |
| 55473 | | |
| 55474 | | > show #!25.6 models |
| 55475 | | |
| 55476 | | > ui tool show Matchmaker |
| 55477 | | |
| 55478 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 55479 | | QTBUG which explains how to reproduce. |
| 55480 | | |
| 55481 | | > matchmaker #!18 to #25.6 |
| 55482 | | |
| 55483 | | Parameters |
| 55484 | | --- |
| 55485 | | Chain pairing | bb |
| 55486 | | Alignment algorithm | Needleman-Wunsch |
| 55487 | | Similarity matrix | BLOSUM-62 |
| 55488 | | SS fraction | 0.3 |
| 55489 | | Gap open (HH/SS/other) | 18/18/6 |
| 55490 | | Gap extend | 1 |
| 55491 | | SS matrix | | | H | S | O |
| 55492 | | ---|---|---|--- |
| 55493 | | H | 6 | -9 | -6 |
| 55494 | | S | | 6 | -6 |
| 55495 | | O | | | 4 |
| 55496 | | Iteration cutoff | 2 |
| 55497 | | |
| 55498 | | Matchmaker 5nzr_COPI_coat_leaf_2017.cif G, chain G (#25.6) with copy of |
| 55499 | | CopG_Q9QZE5_L311-T583, chain A (#18), sequence alignment score = 3090.4 |
| 55500 | | RMSD between 60 pruned atom pairs is 1.358 angstroms; (across all 242 pairs: |
| 55501 | | 4.811) |
| 55502 | | |
| 55503 | | |
| 55504 | | > hide #!25.6 models |
| 55505 | | |
| 55506 | | > show #!1 models |
| 55507 | | |
| 55508 | | > show #!29 models |
| 55509 | | |
| 55510 | | > show #!13 models |
| 55511 | | |
| 55512 | | > hide #!29 models |
| 55513 | | |
| 55514 | | > hide #!18 models |
| 55515 | | |
| 55516 | | > hide #!13 models |
| 55517 | | |
| 55518 | | > show #!26.2 models |
| 55519 | | |
| 55520 | | > show #!9 models |
| 55521 | | |
| 55522 | | > ui tool show Matchmaker |
| 55523 | | |
| 55524 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 55525 | | QTBUG which explains how to reproduce. |
| 55526 | | |
| 55527 | | > matchmaker #!25.6 to #9 |
| 55528 | | |
| 55529 | | Parameters |
| 55530 | | --- |
| 55531 | | Chain pairing | bb |
| 55532 | | Alignment algorithm | Needleman-Wunsch |
| 55533 | | Similarity matrix | BLOSUM-62 |
| 55534 | | SS fraction | 0.3 |
| 55535 | | Gap open (HH/SS/other) | 18/18/6 |
| 55536 | | Gap extend | 1 |
| 55537 | | SS matrix | | | H | S | O |
| 55538 | | ---|---|---|--- |
| 55539 | | H | 6 | -9 | -6 |
| 55540 | | S | | 6 | -6 |
| 55541 | | O | | | 4 |
| 55542 | | Iteration cutoff | 2 |
| 55543 | | |
| 55544 | | Matchmaker CopG_Q9QZE5_L311-T583, chain A (#9) with |
| 55545 | | 5nzr_COPI_coat_leaf_2017.cif G, chain G (#25.6), sequence alignment score = |
| 55546 | | 3090.4 |
| 55547 | | RMSD between 60 pruned atom pairs is 1.358 angstroms; (across all 242 pairs: |
| 55548 | | 4.811) |
| 55549 | | |
| 55550 | | |
| 55551 | | > show #!25.6 models |
| 55552 | | |
| 55553 | | > combine #13 |
| 55554 | | |
| 55555 | | > ui tool show Matchmaker |
| 55556 | | |
| 55557 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 55558 | | QTBUG which explains how to reproduce. |
| 55559 | | |
| 55560 | | > matchmaker #!19 to #25.6 |
| 55561 | | |
| 55562 | | Parameters |
| 55563 | | --- |
| 55564 | | Chain pairing | bb |
| 55565 | | Alignment algorithm | Needleman-Wunsch |
| 55566 | | Similarity matrix | BLOSUM-62 |
| 55567 | | SS fraction | 0.3 |
| 55568 | | Gap open (HH/SS/other) | 18/18/6 |
| 55569 | | Gap extend | 1 |
| 55570 | | SS matrix | | | H | S | O |
| 55571 | | ---|---|---|--- |
| 55572 | | H | 6 | -9 | -6 |
| 55573 | | S | | 6 | -6 |
| 55574 | | O | | | 4 |
| 55575 | | Iteration cutoff | 2 |
| 55576 | | |
| 55577 | | Matchmaker 5nzr_COPI_coat_leaf_2017.cif G, chain G (#25.6) with copy of CopG1_ |
| 55578 | | Q9QZE5_R609-G874.pdb, chain A (#19), sequence alignment score = 3065.8 |
| 55579 | | RMSD between 122 pruned atom pairs is 1.308 angstroms; (across all 266 pairs: |
| 55580 | | 3.294) |
| 55581 | | |
| 55582 | | |
| 55583 | | > hide #!25.6 models |
| 55584 | | |
| 55585 | | > fitmap #19 inMap #1 |
| 55586 | | |
| 55587 | | Fit molecule copy of CopG1_ Q9QZE5_R609-G874.pdb (#19) to map |
| 55588 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2090 atoms |
| 55589 | | average map value = 0.005022, steps = 344 |
| 55590 | | shifted from previous position = 25.9 |
| 55591 | | rotated from previous position = 56.5 degrees |
| 55592 | | atoms outside contour = 1255, contour level = 0.0047281 |
| 55593 | | |
| 55594 | | Position of copy of CopG1_ Q9QZE5_R609-G874.pdb (#19) relative to |
| 55595 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 55596 | | Matrix rotation and translation |
| 55597 | | -0.55193647 -0.74723442 -0.37014437 274.69126079 |
| 55598 | | 0.63814190 -0.66421874 0.38934353 305.66395297 |
| 55599 | | -0.53678771 -0.02131174 0.84344814 288.65866085 |
| 55600 | | Axis -0.28232731 0.11456803 0.95245234 |
| 55601 | | Axis point 116.95421290 212.51516264 0.00000000 |
| 55602 | | Rotation angle (degrees) 133.34214802 |
| 55603 | | Shift along axis 232.40009025 |
| 55604 | | |
| 55605 | | |
| 55606 | | > hide #!26.2 models |
| 55607 | | |
| 55608 | | > show #!26.2 models |
| 55609 | | |
| 55610 | | > show #!29 models |
| 55611 | | |
| 55612 | | > show #!18 models |
| 55613 | | |
| 55614 | | > show #!13 models |
| 55615 | | |
| 55616 | | > hide #!1 models |
| 55617 | | |
| 55618 | | > hide #!9 models |
| 55619 | | |
| 55620 | | > hide #!26.2 models |
| 55621 | | |
| 55622 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 55623 | | > dataset/Structure files/alphafold/CopG1_ Q9QZE5.pdb" |
| 55624 | | |
| 55625 | | CopG1_ Q9QZE5.pdb title: |
| 55626 | | Alphafold monomer V2.0 prediction for coatomer subunit γ-1 (Q9QZE5) [more |
| 55627 | | info...] |
| 55628 | | |
| 55629 | | Chain information for CopG1_ Q9QZE5.pdb #20 |
| 55630 | | --- |
| 55631 | | Chain | Description | UniProt |
| 55632 | | A | coatomer subunit γ-1 | COPG1_MOUSE 1-874 |
| 55633 | | |
| 55634 | | |
| 55635 | | > color #20 #38fb00ff |
| 55636 | | |
| 55637 | | > ui tool show Matchmaker |
| 55638 | | |
| 55639 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 55640 | | QTBUG which explains how to reproduce. |
| 55641 | | |
| 55642 | | > matchmaker #20 to #9 |
| 55643 | | |
| 55644 | | Parameters |
| 55645 | | --- |
| 55646 | | Chain pairing | bb |
| 55647 | | Alignment algorithm | Needleman-Wunsch |
| 55648 | | Similarity matrix | BLOSUM-62 |
| 55649 | | SS fraction | 0.3 |
| 55650 | | Gap open (HH/SS/other) | 18/18/6 |
| 55651 | | Gap extend | 1 |
| 55652 | | SS matrix | | | H | S | O |
| 55653 | | ---|---|---|--- |
| 55654 | | H | 6 | -9 | -6 |
| 55655 | | S | | 6 | -6 |
| 55656 | | O | | | 4 |
| 55657 | | Iteration cutoff | 2 |
| 55658 | | |
| 55659 | | Matchmaker CopG_Q9QZE5_L311-T583, chain A (#9) with CopG1_ Q9QZE5.pdb, chain A |
| 55660 | | (#20), sequence alignment score = 3547.2 |
| 55661 | | RMSD between 276 pruned atom pairs is 0.730 angstroms; (across all 277 pairs: |
| 55662 | | 2.377) |
| 55663 | | |
| 55664 | | |
| 55665 | | > show #!26.2 models |
| 55666 | | |
| 55667 | | > hide #!26.2 models |
| 55668 | | |
| 55669 | | > show #!26.2 models |
| 55670 | | |
| 55671 | | > hide #!26.2 models |
| 55672 | | |
| 55673 | | > hide #!18 models |
| 55674 | | |
| 55675 | | > hide #!19 models |
| 55676 | | |
| 55677 | | > hide #!13 models |
| 55678 | | |
| 55679 | | > hide #!29 models |
| 55680 | | |
| 55681 | | > show #!19 models |
| 55682 | | |
| 55683 | | > hide #20 models |
| 55684 | | |
| 55685 | | > hide #!19 models |
| 55686 | | |
| 55687 | | > show #!18 models |
| 55688 | | |
| 55689 | | > hide #!18 models |
| 55690 | | |
| 55691 | | > show #!18 models |
| 55692 | | |
| 55693 | | > hide #!18 models |
| 55694 | | |
| 55695 | | > show #!9 models |
| 55696 | | |
| 55697 | | > show #20 models |
| 55698 | | |
| 55699 | | > hide #!9 models |
| 55700 | | |
| 55701 | | > show #!9 models |
| 55702 | | |
| 55703 | | > hide #!9 models |
| 55704 | | |
| 55705 | | > select ~sel & ##selected |
| 55706 | | |
| 55707 | | Nothing selected |
| 55708 | | |
| 55709 | | > select ~sel & ##selected |
| 55710 | | |
| 55711 | | Nothing selected |
| 55712 | | |
| 55713 | | > ui tool show Matchmaker |
| 55714 | | |
| 55715 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 55716 | | QTBUG which explains how to reproduce. |
| 55717 | | |
| 55718 | | > matchmaker #20 to #26.2 |
| 55719 | | |
| 55720 | | Parameters |
| 55721 | | --- |
| 55722 | | Chain pairing | bb |
| 55723 | | Alignment algorithm | Needleman-Wunsch |
| 55724 | | Similarity matrix | BLOSUM-62 |
| 55725 | | SS fraction | 0.3 |
| 55726 | | Gap open (HH/SS/other) | 18/18/6 |
| 55727 | | Gap extend | 1 |
| 55728 | | SS matrix | | | H | S | O |
| 55729 | | ---|---|---|--- |
| 55730 | | H | 6 | -9 | -6 |
| 55731 | | S | | 6 | -6 |
| 55732 | | O | | | 4 |
| 55733 | | Iteration cutoff | 2 |
| 55734 | | |
| 55735 | | Matchmaker 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B, chain B (#26.2) with |
| 55736 | | CopG1_ Q9QZE5.pdb, chain A (#20), sequence alignment score = 1223.2 |
| 55737 | | RMSD between 214 pruned atom pairs is 0.825 angstroms; (across all 264 pairs: |
| 55738 | | 2.836) |
| 55739 | | |
| 55740 | | |
| 55741 | | > show #!26.2 models |
| 55742 | | |
| 55743 | | > hide #!26.2 models |
| 55744 | | |
| 55745 | | Drag select of 487 residues |
| 55746 | | |
| 55747 | | > select up |
| 55748 | | |
| 55749 | | 3979 atoms, 4051 bonds, 507 residues, 1 model selected |
| 55750 | | |
| 55751 | | > delete sel |
| 55752 | | |
| 55753 | | > show #!26.2 models |
| 55754 | | |
| 55755 | | > hide #!26.2 models |
| 55756 | | |
| 55757 | | > show #!26.2 models |
| 55758 | | |
| 55759 | | > hide #!26.2 models |
| 55760 | | |
| 55761 | | > show #!26.2 models |
| 55762 | | |
| 55763 | | > hide #!26.2 models |
| 55764 | | |
| 55765 | | > show #!26.2 models |
| 55766 | | |
| 55767 | | > hide #!26.2 models |
| 55768 | | |
| 55769 | | > show #!26.2 models |
| 55770 | | |
| 55771 | | > hide #!26.2 models |
| 55772 | | |
| 55773 | | > hide #!20 models |
| 55774 | | |
| 55775 | | > show #!20 models |
| 55776 | | |
| 55777 | | Drag select of 14 residues |
| 55778 | | |
| 55779 | | > select up |
| 55780 | | |
| 55781 | | 129 atoms, 129 bonds, 16 residues, 1 model selected |
| 55782 | | |
| 55783 | | > delete sel |
| 55784 | | |
| 55785 | | > show #!26.2 models |
| 55786 | | |
| 55787 | | > hide #!26.2 models |
| 55788 | | |
| 55789 | | > show #!26.2 models |
| 55790 | | |
| 55791 | | > hide #!26.2 models |
| 55792 | | |
| 55793 | | > show #!26.2 models |
| 55794 | | |
| 55795 | | > hide #!26.2 models |
| 55796 | | |
| 55797 | | > show #!26.2 models |
| 55798 | | |
| 55799 | | > hide #!26.2 models |
| 55800 | | |
| 55801 | | > show #!26.2 models |
| 55802 | | |
| 55803 | | > hide #!26.2 models |
| 55804 | | |
| 55805 | | > show #!26.2 models |
| 55806 | | |
| 55807 | | > hide #!26.2 models |
| 55808 | | |
| 55809 | | > show #!26.2 models |
| 55810 | | |
| 55811 | | > show #!1 models |
| 55812 | | |
| 55813 | | > hide #!20 models |
| 55814 | | |
| 55815 | | > show #!20 models |
| 55816 | | |
| 55817 | | > hide #!20 models |
| 55818 | | |
| 55819 | | > show #!20 models |
| 55820 | | |
| 55821 | | > hide #!26.2 models |
| 55822 | | |
| 55823 | | > hide #!20 models |
| 55824 | | |
| 55825 | | > show #!29 models |
| 55826 | | |
| 55827 | | > hide #!29 models |
| 55828 | | |
| 55829 | | > show #!26.2 models |
| 55830 | | |
| 55831 | | > hide #!1 models |
| 55832 | | |
| 55833 | | > show #!20 models |
| 55834 | | |
| 55835 | | > show #!9 models |
| 55836 | | |
| 55837 | | > hide #!20 models |
| 55838 | | |
| 55839 | | > show #!20 models |
| 55840 | | |
| 55841 | | > hide #!20 models |
| 55842 | | |
| 55843 | | > show #!20 models |
| 55844 | | |
| 55845 | | > hide #!20 models |
| 55846 | | |
| 55847 | | > show #!20 models |
| 55848 | | |
| 55849 | | > hide #!20 models |
| 55850 | | |
| 55851 | | > show #!20 models |
| 55852 | | |
| 55853 | | > hide #!9 models |
| 55854 | | |
| 55855 | | > show #!9 models |
| 55856 | | |
| 55857 | | > hide #!9 models |
| 55858 | | |
| 55859 | | > show #!9 models |
| 55860 | | |
| 55861 | | > hide #!9 models |
| 55862 | | |
| 55863 | | > show #!9 models |
| 55864 | | |
| 55865 | | > hide #!9 models |
| 55866 | | |
| 55867 | | > hide #!26.2 models |
| 55868 | | |
| 55869 | | > show #!26.2 models |
| 55870 | | |
| 55871 | | > hide #!26.2 models |
| 55872 | | |
| 55873 | | > show #!26.2 models |
| 55874 | | |
| 55875 | | > hide #!26.2 models |
| 55876 | | |
| 55877 | | > show #!18 models |
| 55878 | | |
| 55879 | | > hide #!18 models |
| 55880 | | |
| 55881 | | > show #!18 models |
| 55882 | | |
| 55883 | | > hide #!18 models |
| 55884 | | |
| 55885 | | > show #!18 models |
| 55886 | | |
| 55887 | | > hide #!18 models |
| 55888 | | |
| 55889 | | > show #!9 models |
| 55890 | | |
| 55891 | | > hide #!9 models |
| 55892 | | |
| 55893 | | > hide #!20 models |
| 55894 | | |
| 55895 | | > show #!9 models |
| 55896 | | |
| 55897 | | > show #!1 models |
| 55898 | | |
| 55899 | | > hide #!1 models |
| 55900 | | |
| 55901 | | > hide #!9 models |
| 55902 | | |
| 55903 | | > show #!9 models |
| 55904 | | |
| 55905 | | > hide #!9 models |
| 55906 | | |
| 55907 | | > show #!20 models |
| 55908 | | |
| 55909 | | Drag select of 24 residues |
| 55910 | | |
| 55911 | | > select up |
| 55912 | | |
| 55913 | | 197 atoms, 196 bonds, 26 residues, 1 model selected |
| 55914 | | |
| 55915 | | > delete sel |
| 55916 | | |
| 55917 | | Drag select of 7 residues |
| 55918 | | |
| 55919 | | > delete sel |
| 55920 | | |
| 55921 | | > fitmap #20 inMap #1 |
| 55922 | | |
| 55923 | | Fit molecule CopG1_ Q9QZE5.pdb (#20) to map |
| 55924 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2482 atoms |
| 55925 | | average map value = 0.01112, steps = 52 |
| 55926 | | shifted from previous position = 0.772 |
| 55927 | | rotated from previous position = 5.6 degrees |
| 55928 | | atoms outside contour = 865, contour level = 0.0047281 |
| 55929 | | |
| 55930 | | Position of CopG1_ Q9QZE5.pdb (#20) relative to |
| 55931 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 55932 | | Matrix rotation and translation |
| 55933 | | 0.55710873 -0.07627004 -0.82692971 263.00523089 |
| 55934 | | 0.76700327 -0.33445249 0.54758334 289.99057464 |
| 55935 | | -0.31833291 -0.93932125 -0.12782703 276.73132173 |
| 55936 | | Axis -0.83372741 -0.28517707 0.47283470 |
| 55937 | | Axis point 0.00000000 231.68438433 124.14950695 |
| 55938 | | Rotation angle (degrees) 116.90968153 |
| 55939 | | Shift along axis -171.12516145 |
| 55940 | | |
| 55941 | | |
| 55942 | | > show #!1 models |
| 55943 | | |
| 55944 | | > hide #!1 models |
| 55945 | | |
| 55946 | | Drag select of 15 residues |
| 55947 | | |
| 55948 | | > select up |
| 55949 | | |
| 55950 | | 180 atoms, 182 bonds, 23 residues, 1 model selected |
| 55951 | | |
| 55952 | | > delete sel |
| 55953 | | |
| 55954 | | > fitmap #20 inMap #1 |
| 55955 | | |
| 55956 | | Fit molecule CopG1_ Q9QZE5.pdb (#20) to map |
| 55957 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2302 atoms |
| 55958 | | average map value = 0.01162, steps = 48 |
| 55959 | | shifted from previous position = 0.0621 |
| 55960 | | rotated from previous position = 0.185 degrees |
| 55961 | | atoms outside contour = 743, contour level = 0.0047281 |
| 55962 | | |
| 55963 | | Position of CopG1_ Q9QZE5.pdb (#20) relative to |
| 55964 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 55965 | | Matrix rotation and translation |
| 55966 | | 0.55964495 -0.07618951 -0.82522281 262.95431078 |
| 55967 | | 0.76574603 -0.33324062 0.55007609 290.10442387 |
| 55968 | | -0.31690778 -0.93975840 -0.12815461 276.70475087 |
| 55969 | | Axis -0.83455979 -0.28474256 0.47162658 |
| 55970 | | Axis point 0.00000000 232.00364407 123.73056407 |
| 55971 | | Rotation angle (degrees) 116.79984588 |
| 55972 | | Shift along axis -171.55485435 |
| 55973 | | |
| 55974 | | |
| 55975 | | > fitmap #20 inMap #1 |
| 55976 | | |
| 55977 | | Fit molecule CopG1_ Q9QZE5.pdb (#20) to map |
| 55978 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2302 atoms |
| 55979 | | average map value = 0.01162, steps = 40 |
| 55980 | | shifted from previous position = 0.0116 |
| 55981 | | rotated from previous position = 0.00964 degrees |
| 55982 | | atoms outside contour = 745, contour level = 0.0047281 |
| 55983 | | |
| 55984 | | Position of CopG1_ Q9QZE5.pdb (#20) relative to |
| 55985 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 55986 | | Matrix rotation and translation |
| 55987 | | 0.55953483 -0.07626531 -0.82529048 262.96525640 |
| 55988 | | 0.76582416 -0.33317606 0.55000643 290.09547063 |
| 55989 | | -0.31691344 -0.93977514 -0.12801779 276.71363286 |
| 55990 | | Axis -0.83450860 -0.28476994 0.47170063 |
| 55991 | | Axis point 0.00000000 232.00972021 123.74632857 |
| 55992 | | Rotation angle (degrees) 116.79691707 |
| 55993 | | Shift along axis -171.53124161 |
| 55994 | | |
| 55995 | | |
| 55996 | | > show #!1 models |
| 55997 | | |
| 55998 | | > hide #!1 models |
| 55999 | | |
| 56000 | | > show #!9 models |
| 56001 | | |
| 56002 | | > show #!1 models |
| 56003 | | |
| 56004 | | > hide #!1 models |
| 56005 | | |
| 56006 | | > hide #!9 models |
| 56007 | | |
| 56008 | | > show #!9 models |
| 56009 | | |
| 56010 | | > hide #!9 models |
| 56011 | | |
| 56012 | | > rename #20 "CopG1_ Q9QZE5_K24-.pdb" |
| 56013 | | |
| 56014 | | > rename #20 "CopG1_ Q9QZE5_K24-H318.pdb" |
| 56015 | | |
| 56016 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 56017 | | > dataset/Chimera sessions/20240710_leaf_fitting_v42_labelled.cxs" |
| 56018 | | |
| 56019 | | > combine #20 |
| 56020 | | |
| 56021 | | > ui tool show Matchmaker |
| 56022 | | |
| 56023 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 56024 | | QTBUG which explains how to reproduce. |
| 56025 | | |
| 56026 | | > matchmaker #!21 to #29 |
| 56027 | | |
| 56028 | | Parameters |
| 56029 | | --- |
| 56030 | | Chain pairing | bb |
| 56031 | | Alignment algorithm | Needleman-Wunsch |
| 56032 | | Similarity matrix | BLOSUM-62 |
| 56033 | | SS fraction | 0.3 |
| 56034 | | Gap open (HH/SS/other) | 18/18/6 |
| 56035 | | Gap extend | 1 |
| 56036 | | SS matrix | | | H | S | O |
| 56037 | | ---|---|---|--- |
| 56038 | | H | 6 | -9 | -6 |
| 56039 | | S | | 6 | -6 |
| 56040 | | O | | | 4 |
| 56041 | | Iteration cutoff | 2 |
| 56042 | | |
| 56043 | | Matchmaker copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B, chain B (#29) |
| 56044 | | with copy of CopG1_ Q9QZE5_K24-H318.pdb, chain A (#21), sequence alignment |
| 56045 | | score = 1214.8 |
| 56046 | | RMSD between 214 pruned atom pairs is 0.839 angstroms; (across all 260 pairs: |
| 56047 | | 2.778) |
| 56048 | | |
| 56049 | | |
| 56050 | | > hide #!20 models |
| 56051 | | |
| 56052 | | > show #!29 models |
| 56053 | | |
| 56054 | | > show #!1 models |
| 56055 | | |
| 56056 | | > hide #!1 models |
| 56057 | | |
| 56058 | | > show #!1 models |
| 56059 | | |
| 56060 | | > hide #!1 models |
| 56061 | | |
| 56062 | | > hide #!21 models |
| 56063 | | |
| 56064 | | > hide #!29 models |
| 56065 | | |
| 56066 | | > show #!18 models |
| 56067 | | |
| 56068 | | > show #!21 models |
| 56069 | | |
| 56070 | | > show #!1 models |
| 56071 | | |
| 56072 | | > hide #!21 models |
| 56073 | | |
| 56074 | | > hide #!18 models |
| 56075 | | |
| 56076 | | > hide #!1 models |
| 56077 | | |
| 56078 | | > show #!1 models |
| 56079 | | |
| 56080 | | > show #10 models |
| 56081 | | |
| 56082 | | > show #12 models |
| 56083 | | |
| 56084 | | > show #26.3 models |
| 56085 | | |
| 56086 | | > show #28 models |
| 56087 | | |
| 56088 | | > hide #!1 models |
| 56089 | | |
| 56090 | | > hide #26.3 models |
| 56091 | | |
| 56092 | | > show #26.3 models |
| 56093 | | |
| 56094 | | > hide #26.3 models |
| 56095 | | |
| 56096 | | > hide #28 models |
| 56097 | | |
| 56098 | | > show #28 models |
| 56099 | | |
| 56100 | | > hide #10 models |
| 56101 | | |
| 56102 | | > show #10 models |
| 56103 | | |
| 56104 | | > hide #10 models |
| 56105 | | |
| 56106 | | > show #10 models |
| 56107 | | |
| 56108 | | > hide #12 models |
| 56109 | | |
| 56110 | | > show #12 models |
| 56111 | | |
| 56112 | | > show #!1 models |
| 56113 | | |
| 56114 | | > show #!9 models |
| 56115 | | |
| 56116 | | > hide #!9 models |
| 56117 | | |
| 56118 | | > show #!15 models |
| 56119 | | |
| 56120 | | > hide #!15 models |
| 56121 | | |
| 56122 | | > show #!16 models |
| 56123 | | |
| 56124 | | > hide #!16 models |
| 56125 | | |
| 56126 | | > show #!15 models |
| 56127 | | |
| 56128 | | > hide #!15 models |
| 56129 | | |
| 56130 | | > show #32.1 models |
| 56131 | | |
| 56132 | | > hide #32.1 models |
| 56133 | | |
| 56134 | | > show #!40 models |
| 56135 | | |
| 56136 | | > hide #!40 models |
| 56137 | | |
| 56138 | | > show #!29 models |
| 56139 | | |
| 56140 | | > show #!18 models |
| 56141 | | |
| 56142 | | > hide #!18 models |
| 56143 | | |
| 56144 | | > show #!21 models |
| 56145 | | |
| 56146 | | > hide #!29 models |
| 56147 | | |
| 56148 | | > hide #28 models |
| 56149 | | |
| 56150 | | > show #28 models |
| 56151 | | |
| 56152 | | > hide #!21 models |
| 56153 | | |
| 56154 | | > hide #28 models |
| 56155 | | |
| 56156 | | > show #28 models |
| 56157 | | |
| 56158 | | > hide #!1 models |
| 56159 | | |
| 56160 | | > hide #12 models |
| 56161 | | |
| 56162 | | > show #12 models |
| 56163 | | |
| 56164 | | > hide #10 models |
| 56165 | | |
| 56166 | | > show #!1 models |
| 56167 | | |
| 56168 | | > hide #!1 models |
| 56169 | | |
| 56170 | | Drag select of 17 residues |
| 56171 | | |
| 56172 | | > select up |
| 56173 | | |
| 56174 | | 200 atoms, 202 bonds, 25 residues, 1 model selected |
| 56175 | | |
| 56176 | | > select clear |
| 56177 | | |
| 56178 | | Drag select of 24 residues |
| 56179 | | |
| 56180 | | > show #!1 models |
| 56181 | | |
| 56182 | | > hide #!1 models |
| 56183 | | |
| 56184 | | > show #!1 models |
| 56185 | | |
| 56186 | | > hide #!1 models |
| 56187 | | |
| 56188 | | > delete sel |
| 56189 | | |
| 56190 | | > show #!1 models |
| 56191 | | |
| 56192 | | > hide #!1 models |
| 56193 | | |
| 56194 | | > hide #28 models |
| 56195 | | |
| 56196 | | > rename #12 "copy of CopZ1_P61924_M1-V153.pdb" |
| 56197 | | |
| 56198 | | > hide #12 models |
| 56199 | | |
| 56200 | | > show #12 models |
| 56201 | | |
| 56202 | | > show #10 models |
| 56203 | | |
| 56204 | | Drag select of 23 residues |
| 56205 | | |
| 56206 | | > delete sel |
| 56207 | | |
| 56208 | | Drag select of 1 residues |
| 56209 | | |
| 56210 | | > delete sel |
| 56211 | | |
| 56212 | | > rename #10 CopZ1_P61924_M1-V153.pdb |
| 56213 | | |
| 56214 | | > hide #10 models |
| 56215 | | |
| 56216 | | > show #26.3 models |
| 56217 | | |
| 56218 | | > show #10 models |
| 56219 | | |
| 56220 | | > hide #10 models |
| 56221 | | |
| 56222 | | > hide #12 models |
| 56223 | | |
| 56224 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 56225 | | > dataset/Chimera sessions/20240710_leaf_fitting_v42_labelled.cxs" |
| 56226 | | |
| 56227 | | > hide #26.3 models |
| 56228 | | |
| 56229 | | > show #!24 models |
| 56230 | | |
| 56231 | | > show #11 models |
| 56232 | | |
| 56233 | | > hide #11 models |
| 56234 | | |
| 56235 | | > show #11 models |
| 56236 | | |
| 56237 | | > show #!1 models |
| 56238 | | |
| 56239 | | > hide #!1 models |
| 56240 | | |
| 56241 | | Drag select of 20 residues |
| 56242 | | |
| 56243 | | > select up |
| 56244 | | |
| 56245 | | 174 atoms, 173 bonds, 23 residues, 1 model selected |
| 56246 | | |
| 56247 | | > delete sel |
| 56248 | | |
| 56249 | | Drag select of 16 residues |
| 56250 | | |
| 56251 | | > select up |
| 56252 | | |
| 56253 | | 281 atoms, 280 bonds, 38 residues, 1 model selected |
| 56254 | | |
| 56255 | | > select down |
| 56256 | | |
| 56257 | | 100 atoms, 16 residues, 1 model selected |
| 56258 | | Drag select of 4 residues |
| 56259 | | Drag select of 8 residues |
| 56260 | | |
| 56261 | | > delete sel |
| 56262 | | |
| 56263 | | Drag select of 11 residues |
| 56264 | | |
| 56265 | | > delete sel |
| 56266 | | |
| 56267 | | Drag select of 3 residues |
| 56268 | | Drag select of 5 residues |
| 56269 | | |
| 56270 | | > delete sel |
| 56271 | | |
| 56272 | | > select clear |
| 56273 | | |
| 56274 | | Drag select of 6 residues |
| 56275 | | |
| 56276 | | > delete sel |
| 56277 | | |
| 56278 | | Drag select of 1 residues |
| 56279 | | |
| 56280 | | > delete sel |
| 56281 | | |
| 56282 | | > show #!1 models |
| 56283 | | |
| 56284 | | > select #11/A:55 |
| 56285 | | |
| 56286 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 56287 | | |
| 56288 | | > delete sel |
| 56289 | | |
| 56290 | | > hide #!1 models |
| 56291 | | |
| 56292 | | > hide #!24 models |
| 56293 | | |
| 56294 | | > rename #11 "Golph3_ Q9CRA5_K56-K298.pdb" |
| 56295 | | |
| 56296 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 56297 | | > dataset/Chimera sessions/20240710_leaf_fitting_v42_labelled.cxs" |
| 56298 | | |
| 56299 | | > hide #11 models |
| 56300 | | |
| 56301 | | > show #!40 models |
| 56302 | | |
| 56303 | | > show #32.1 models |
| 56304 | | |
| 56305 | | > hide #32.1 models |
| 56306 | | |
| 56307 | | > show #32.1 models |
| 56308 | | |
| 56309 | | > hide #32.1 models |
| 56310 | | |
| 56311 | | > show #!16 models |
| 56312 | | |
| 56313 | | > hide #!16 models |
| 56314 | | |
| 56315 | | > show #!16 models |
| 56316 | | |
| 56317 | | > hide #!16 models |
| 56318 | | |
| 56319 | | > show #!16 models |
| 56320 | | |
| 56321 | | > hide #!16 models |
| 56322 | | |
| 56323 | | > show #!15 models |
| 56324 | | |
| 56325 | | > hide #!15 models |
| 56326 | | |
| 56327 | | > show #!4 models |
| 56328 | | |
| 56329 | | > hide #!4 models |
| 56330 | | |
| 56331 | | > ui tool show Matchmaker |
| 56332 | | |
| 56333 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 56334 | | QTBUG which explains how to reproduce. |
| 56335 | | |
| 56336 | | > matchmaker #!40 to #4 |
| 56337 | | |
| 56338 | | Parameters |
| 56339 | | --- |
| 56340 | | Chain pairing | bb |
| 56341 | | Alignment algorithm | Needleman-Wunsch |
| 56342 | | Similarity matrix | BLOSUM-62 |
| 56343 | | SS fraction | 0.3 |
| 56344 | | Gap open (HH/SS/other) | 18/18/6 |
| 56345 | | Gap extend | 1 |
| 56346 | | SS matrix | | | H | S | O |
| 56347 | | ---|---|---|--- |
| 56348 | | H | 6 | -9 | -6 |
| 56349 | | S | | 6 | -6 |
| 56350 | | O | | | 4 |
| 56351 | | Iteration cutoff | 2 |
| 56352 | | |
| 56353 | | Matchmaker CopB_Q9JIF7_P395-L953.pdb, chain A (#4) with |
| 56354 | | fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif, chain B (#40), sequence |
| 56355 | | alignment score = 4110.5 |
| 56356 | | RMSD between 179 pruned atom pairs is 1.370 angstroms; (across all 520 pairs: |
| 56357 | | 5.457) |
| 56358 | | |
| 56359 | | |
| 56360 | | > show #!4 models |
| 56361 | | |
| 56362 | | > hide #!4 models |
| 56363 | | |
| 56364 | | > show #!4 models |
| 56365 | | |
| 56366 | | > hide #!4 models |
| 56367 | | |
| 56368 | | > hide #40.1 models |
| 56369 | | |
| 56370 | | > show #40.1 models |
| 56371 | | |
| 56372 | | > hide #!40 models |
| 56373 | | |
| 56374 | | > show #!40 models |
| 56375 | | |
| 56376 | | > hide #40.1 models |
| 56377 | | |
| 56378 | | > show #40.1 models |
| 56379 | | |
| 56380 | | > hide #40.2 models |
| 56381 | | |
| 56382 | | > show #40.2 models |
| 56383 | | |
| 56384 | | > hide #40.1 models |
| 56385 | | |
| 56386 | | > show #40.1 models |
| 56387 | | |
| 56388 | | > select add #40 |
| 56389 | | |
| 56390 | | 39508 atoms, 40254 bonds, 5000 residues, 1 model selected |
| 56391 | | |
| 56392 | | > show #!4 models |
| 56393 | | |
| 56394 | | > ui mousemode right "translate selected models" |
| 56395 | | |
| 56396 | | > view matrix models |
| 56397 | | > #40,-0.45175,0.88042,0.14417,282.18,0.88959,0.45675,-0.0017694,344.15,-0.067408,0.12745,-0.98955,350.14 |
| 56398 | | |
| 56399 | | > ui mousemode right "move picked models" |
| 56400 | | |
| 56401 | | > ui mousemode right "rotate selected models" |
| 56402 | | |
| 56403 | | > view matrix models |
| 56404 | | > #40,-0.48319,0.8755,0.0039949,280.87,0.85474,0.47271,-0.21439,341.94,-0.18959,-0.10018,-0.97674,352.43 |
| 56405 | | |
| 56406 | | > ui mousemode right "translate selected models" |
| 56407 | | |
| 56408 | | > view matrix models |
| 56409 | | > #40,-0.48319,0.8755,0.0039949,278.81,0.85474,0.47271,-0.21439,341.94,-0.18959,-0.10018,-0.97674,350.53 |
| 56410 | | |
| 56411 | | > fitmap #40 inMap #1 |
| 56412 | | |
| 56413 | | Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map |
| 56414 | | relion_locres_filtered_20240326_GT.mrc (#1) using 39508 atoms |
| 56415 | | average map value = 0.005223, steps = 200 |
| 56416 | | shifted from previous position = 8.42 |
| 56417 | | rotated from previous position = 12.5 degrees |
| 56418 | | atoms outside contour = 24977, contour level = 0.0047281 |
| 56419 | | |
| 56420 | | Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) |
| 56421 | | relative to relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 56422 | | Matrix rotation and translation |
| 56423 | | -0.52028952 0.84088907 0.14901137 220.07158255 |
| 56424 | | 0.84302980 0.53359831 -0.06762847 260.64421830 |
| 56425 | | -0.13638026 0.09043464 -0.98652015 268.86282147 |
| 56426 | | Axis 0.48448953 0.87477245 0.00656169 |
| 56427 | | Axis point 50.37234045 0.00000000 130.77427705 |
| 56428 | | Rotation angle (degrees) 170.61176661 |
| 56429 | | Shift along axis 336.39095332 |
| 56430 | | |
| 56431 | | |
| 56432 | | > fitmap #40 inMap #1 |
| 56433 | | |
| 56434 | | Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map |
| 56435 | | relion_locres_filtered_20240326_GT.mrc (#1) using 39508 atoms |
| 56436 | | average map value = 0.005222, steps = 64 |
| 56437 | | shifted from previous position = 0.0384 |
| 56438 | | rotated from previous position = 0.0256 degrees |
| 56439 | | atoms outside contour = 24974, contour level = 0.0047281 |
| 56440 | | |
| 56441 | | Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) |
| 56442 | | relative to relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 56443 | | Matrix rotation and translation |
| 56444 | | -0.52062312 0.84070985 0.14885742 220.03596019 |
| 56445 | | 0.84281462 0.53392261 -0.06775084 260.63448528 |
| 56446 | | -0.13643714 0.09018656 -0.98653500 268.85402522 |
| 56447 | | Axis 0.48432100 0.87486657 0.00645437 |
| 56448 | | Axis point 50.38436969 0.00000000 130.78499451 |
| 56449 | | Rotation angle (degrees) 170.61600734 |
| 56450 | | Shift along axis 336.32371732 |
| 56451 | | |
| 56452 | | |
| 56453 | | > fitmap #40 inMap #1 |
| 56454 | | |
| 56455 | | Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map |
| 56456 | | relion_locres_filtered_20240326_GT.mrc (#1) using 39508 atoms |
| 56457 | | average map value = 0.005223, steps = 104 |
| 56458 | | shifted from previous position = 0.0365 |
| 56459 | | rotated from previous position = 0.0151 degrees |
| 56460 | | atoms outside contour = 24982, contour level = 0.0047281 |
| 56461 | | |
| 56462 | | Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) |
| 56463 | | relative to relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 56464 | | Matrix rotation and translation |
| 56465 | | -0.52041410 0.84082219 0.14895373 220.07025505 |
| 56466 | | 0.84294218 0.53372423 -0.06772691 260.64629599 |
| 56467 | | -0.13644650 0.09031335 -0.98652210 268.85494797 |
| 56468 | | Axis 0.48442493 0.87480870 0.00649820 |
| 56469 | | Axis point 50.38369375 0.00000000 130.77854463 |
| 56470 | | Rotation angle (degrees) 170.61187337 |
| 56471 | | Shift along axis 336.37023767 |
| 56472 | | |
| 56473 | | |
| 56474 | | > fitmap #40 inMap #1 |
| 56475 | | |
| 56476 | | Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map |
| 56477 | | relion_locres_filtered_20240326_GT.mrc (#1) using 39508 atoms |
| 56478 | | average map value = 0.005222, steps = 48 |
| 56479 | | shifted from previous position = 0.0459 |
| 56480 | | rotated from previous position = 0.0282 degrees |
| 56481 | | atoms outside contour = 24966, contour level = 0.0047281 |
| 56482 | | |
| 56483 | | Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) |
| 56484 | | relative to relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 56485 | | Matrix rotation and translation |
| 56486 | | -0.52081360 0.84060651 0.14877464 220.02590390 |
| 56487 | | 0.84270437 0.53409979 -0.06772571 260.63740010 |
| 56488 | | -0.13639118 0.09010057 -0.98654921 268.85096863 |
| 56489 | | Axis 0.48422748 0.87491846 0.00643644 |
| 56490 | | Axis point 50.38967324 0.00000000 130.78640422 |
| 56491 | | Rotation angle (degrees) 170.62084158 |
| 56492 | | Shift along axis 336.30950487 |
| 56493 | | |
| 56494 | | |
| 56495 | | > fitmap #40 inMap #1 |
| 56496 | | |
| 56497 | | Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map |
| 56498 | | relion_locres_filtered_20240326_GT.mrc (#1) using 39508 atoms |
| 56499 | | average map value = 0.005222, steps = 48 |
| 56500 | | shifted from previous position = 0.0366 |
| 56501 | | rotated from previous position = 0.0134 degrees |
| 56502 | | atoms outside contour = 24967, contour level = 0.0047281 |
| 56503 | | |
| 56504 | | Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) |
| 56505 | | relative to relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 56506 | | Matrix rotation and translation |
| 56507 | | -0.52067236 0.84069681 0.14875876 220.05486438 |
| 56508 | | 0.84276997 0.53397284 -0.06791016 260.65467963 |
| 56509 | | -0.13652500 0.09001047 -0.98653892 268.83774949 |
| 56510 | | Axis 0.48429600 0.87488112 0.00635777 |
| 56511 | | Axis point 50.39301899 0.00000000 130.79007829 |
| 56512 | | Rotation angle (degrees) 170.61652318 |
| 56513 | | Shift along axis 336.32275464 |
| 56514 | | |
| 56515 | | |
| 56516 | | > fitmap #40 inMap #1 |
| 56517 | | |
| 56518 | | Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map |
| 56519 | | relion_locres_filtered_20240326_GT.mrc (#1) using 39508 atoms |
| 56520 | | average map value = 0.005223, steps = 44 |
| 56521 | | shifted from previous position = 0.0138 |
| 56522 | | rotated from previous position = 0.018 degrees |
| 56523 | | atoms outside contour = 24974, contour level = 0.0047281 |
| 56524 | | |
| 56525 | | Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) |
| 56526 | | relative to relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 56527 | | Matrix rotation and translation |
| 56528 | | -0.52048878 0.84078702 0.14889135 220.06131970 |
| 56529 | | 0.84289793 0.53379198 -0.06774370 260.65567170 |
| 56530 | | -0.13643503 0.09024038 -0.98653037 268.84933649 |
| 56531 | | Axis 0.48438915 0.87482870 0.00647220 |
| 56532 | | Axis point 50.37990075 0.00000000 130.78014813 |
| 56533 | | Rotation angle (degrees) 170.61454145 |
| 56534 | | Shift along axis 336.36442614 |
| 56535 | | |
| 56536 | | |
| 56537 | | > show #!1 models |
| 56538 | | |
| 56539 | | > hide #!1 models |
| 56540 | | |
| 56541 | | > hide #!4 models |
| 56542 | | |
| 56543 | | > show #!4 models |
| 56544 | | |
| 56545 | | > view matrix models |
| 56546 | | > #40,-0.53175,0.83455,0.14409,280.1,0.83762,0.54337,-0.055977,340.95,-0.12501,0.090928,-0.98798,350.27 |
| 56547 | | |
| 56548 | | > view matrix models |
| 56549 | | > #40,-0.53175,0.83455,0.14409,281.03,0.83762,0.54337,-0.055977,340.26,-0.12501,0.090928,-0.98798,350.34 |
| 56550 | | |
| 56551 | | > ui mousemode right "rotate selected models" |
| 56552 | | |
| 56553 | | > view matrix models |
| 56554 | | > #40,-0.41151,0.87987,0.23768,281.72,0.86546,0.459,-0.20074,339.93,-0.28572,0.12309,-0.95037,349.89 |
| 56555 | | |
| 56556 | | > ui mousemode right "translate selected models" |
| 56557 | | |
| 56558 | | > view matrix models |
| 56559 | | > #40,-0.41151,0.87987,0.23768,280.57,0.86546,0.459,-0.20074,340.91,-0.28572,0.12309,-0.95037,350.32 |
| 56560 | | |
| 56561 | | > ui mousemode right "rotate selected models" |
| 56562 | | |
| 56563 | | > view matrix models |
| 56564 | | > #40,-0.61633,0.72128,0.31606,282.47,0.75468,0.65564,-0.024568,340.07,-0.22494,0.22338,-0.94842,349.41 |
| 56565 | | |
| 56566 | | > ui mousemode right "translate selected models" |
| 56567 | | |
| 56568 | | > view matrix models |
| 56569 | | > #40,-0.61633,0.72128,0.31606,282.55,0.75468,0.65564,-0.024568,340.73,-0.22494,0.22338,-0.94842,347.75 |
| 56570 | | |
| 56571 | | > ui tool show Matchmaker |
| 56572 | | |
| 56573 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 56574 | | QTBUG which explains how to reproduce. |
| 56575 | | |
| 56576 | | > matchmaker #!40 to #4 |
| 56577 | | |
| 56578 | | Parameters |
| 56579 | | --- |
| 56580 | | Chain pairing | bb |
| 56581 | | Alignment algorithm | Needleman-Wunsch |
| 56582 | | Similarity matrix | BLOSUM-62 |
| 56583 | | SS fraction | 0.3 |
| 56584 | | Gap open (HH/SS/other) | 18/18/6 |
| 56585 | | Gap extend | 1 |
| 56586 | | SS matrix | | | H | S | O |
| 56587 | | ---|---|---|--- |
| 56588 | | H | 6 | -9 | -6 |
| 56589 | | S | | 6 | -6 |
| 56590 | | O | | | 4 |
| 56591 | | Iteration cutoff | 2 |
| 56592 | | |
| 56593 | | Matchmaker CopB_Q9JIF7_P395-L953.pdb, chain A (#4) with |
| 56594 | | fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif, chain B (#40), sequence |
| 56595 | | alignment score = 4110.5 |
| 56596 | | RMSD between 179 pruned atom pairs is 1.370 angstroms; (across all 520 pairs: |
| 56597 | | 5.457) |
| 56598 | | |
| 56599 | | |
| 56600 | | > ui mousemode right "rotate selected models" |
| 56601 | | |
| 56602 | | > view matrix models |
| 56603 | | > #40,-0.31935,0.83114,0.45521,287.02,0.88268,0.43568,-0.17625,341.17,-0.34481,0.34552,-0.87277,346.76 |
| 56604 | | |
| 56605 | | > view matrix models |
| 56606 | | > #40,-0.44367,0.86607,0.23039,284.23,0.80522,0.49809,-0.32175,338.94,-0.39341,0.042765,-0.91837,349.54 |
| 56607 | | |
| 56608 | | > ui mousemode right "translate selected models" |
| 56609 | | |
| 56610 | | > view matrix models |
| 56611 | | > #40,-0.44367,0.86607,0.23039,282.32,0.80522,0.49809,-0.32175,339.86,-0.39341,0.042765,-0.91837,348.1 |
| 56612 | | |
| 56613 | | > fitmap #40 inMap #1 |
| 56614 | | |
| 56615 | | Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map |
| 56616 | | relion_locres_filtered_20240326_GT.mrc (#1) using 39508 atoms |
| 56617 | | average map value = 0.005223, steps = 164 |
| 56618 | | shifted from previous position = 4.58 |
| 56619 | | rotated from previous position = 16.7 degrees |
| 56620 | | atoms outside contour = 24975, contour level = 0.0047281 |
| 56621 | | |
| 56622 | | Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) |
| 56623 | | relative to relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 56624 | | Matrix rotation and translation |
| 56625 | | -0.52048952 0.84078158 0.14891953 220.04518033 |
| 56626 | | 0.84289479 0.53379676 -0.06774517 260.61986334 |
| 56627 | | -0.13645165 0.09026284 -0.98652602 268.86066498 |
| 56628 | | Axis 0.48438709 0.87482980 0.00647824 |
| 56629 | | Axis point 50.38454975 0.00000000 130.78449689 |
| 56630 | | Rotation angle (degrees) 170.61306625 |
| 56631 | | Shift along axis 336.32681054 |
| 56632 | | |
| 56633 | | |
| 56634 | | > fitmap #40 inMap #1 |
| 56635 | | |
| 56636 | | Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map |
| 56637 | | relion_locres_filtered_20240326_GT.mrc (#1) using 39508 atoms |
| 56638 | | average map value = 0.005223, steps = 64 |
| 56639 | | shifted from previous position = 0.0314 |
| 56640 | | rotated from previous position = 0.0123 degrees |
| 56641 | | atoms outside contour = 24976, contour level = 0.0047281 |
| 56642 | | |
| 56643 | | Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) |
| 56644 | | relative to relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 56645 | | Matrix rotation and translation |
| 56646 | | -0.52035216 0.84085379 0.14899177 220.06715093 |
| 56647 | | 0.84299036 0.53365933 -0.06763871 260.64221906 |
| 56648 | | -0.13638511 0.09040267 -0.98652242 268.86235387 |
| 56649 | | Axis 0.48445775 0.87479014 0.00654940 |
| 56650 | | Axis point 50.37588260 0.00000000 130.77563938 |
| 56651 | | Rotation angle (degrees) 170.61244765 |
| 56652 | | Shift along axis 336.38136726 |
| 56653 | | |
| 56654 | | |
| 56655 | | > fitmap #40 inMap #1 |
| 56656 | | |
| 56657 | | Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map |
| 56658 | | relion_locres_filtered_20240326_GT.mrc (#1) using 39508 atoms |
| 56659 | | average map value = 0.005223, steps = 44 |
| 56660 | | shifted from previous position = 0.00595 |
| 56661 | | rotated from previous position = 0.00214 degrees |
| 56662 | | atoms outside contour = 24974, contour level = 0.0047281 |
| 56663 | | |
| 56664 | | Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) |
| 56665 | | relative to relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 56666 | | Matrix rotation and translation |
| 56667 | | -0.52032365 0.84086898 0.14900562 220.06753255 |
| 56668 | | 0.84300489 0.53363422 -0.06765573 260.63688843 |
| 56669 | | -0.13640410 0.09040958 -0.98651916 268.86496746 |
| 56670 | | Axis 0.48447124 0.87478269 0.00654655 |
| 56671 | | Axis point 50.37676888 0.00000000 130.77712244 |
| 56672 | | Rotation angle (degrees) 170.61127680 |
| 56673 | | Shift along axis 336.37716843 |
| 56674 | | |
| 56675 | | |
| 56676 | | > fitmap #40 inMap #1 |
| 56677 | | |
| 56678 | | Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map |
| 56679 | | relion_locres_filtered_20240326_GT.mrc (#1) using 39508 atoms |
| 56680 | | average map value = 0.005223, steps = 48 |
| 56681 | | shifted from previous position = 0.0189 |
| 56682 | | rotated from previous position = 0.00916 degrees |
| 56683 | | atoms outside contour = 24967, contour level = 0.0047281 |
| 56684 | | |
| 56685 | | Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) |
| 56686 | | relative to relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 56687 | | Matrix rotation and translation |
| 56688 | | -0.52027091 0.84090187 0.14900419 220.05680972 |
| 56689 | | 0.84301710 0.53359531 -0.06781028 260.63941243 |
| 56690 | | -0.13652973 0.09033336 -0.98650876 268.84978446 |
| 56691 | | Axis 0.48449382 0.87477068 0.00648028 |
| 56692 | | Axis point 50.37255935 0.00000000 130.77855079 |
| 56693 | | Rotation angle (degrees) 170.60702404 |
| 56694 | | Shift along axis 336.35810393 |
| 56695 | | |
| 56696 | | |
| 56697 | | > fitmap #40 inMap #1 |
| 56698 | | |
| 56699 | | Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map |
| 56700 | | relion_locres_filtered_20240326_GT.mrc (#1) using 39508 atoms |
| 56701 | | average map value = 0.005223, steps = 80 |
| 56702 | | shifted from previous position = 0.0104 |
| 56703 | | rotated from previous position = 0.00932 degrees |
| 56704 | | atoms outside contour = 24970, contour level = 0.0047281 |
| 56705 | | |
| 56706 | | Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) |
| 56707 | | relative to relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 56708 | | Matrix rotation and translation |
| 56709 | | -0.52038816 0.84083756 0.14895765 220.05287043 |
| 56710 | | 0.84296038 0.53369740 -0.06771195 260.64877964 |
| 56711 | | -0.13643306 0.09032890 -0.98652254 268.84767937 |
| 56712 | | Axis 0.48443866 0.87480103 0.00650702 |
| 56713 | | Axis point 50.37095373 0.00000000 130.77458825 |
| 56714 | | Rotation angle (degrees) 170.61210637 |
| 56715 | | Shift along axis 336.36733609 |
| 56716 | | |
| 56717 | | |
| 56718 | | > fitmap #40 inMap #1 |
| 56719 | | |
| 56720 | | Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map |
| 56721 | | relion_locres_filtered_20240326_GT.mrc (#1) using 39508 atoms |
| 56722 | | average map value = 0.005222, steps = 60 |
| 56723 | | shifted from previous position = 0.012 |
| 56724 | | rotated from previous position = 0.0197 degrees |
| 56725 | | atoms outside contour = 24967, contour level = 0.0047281 |
| 56726 | | |
| 56727 | | Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) |
| 56728 | | relative to relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 56729 | | Matrix rotation and translation |
| 56730 | | -0.52065246 0.84069698 0.14882751 220.04216754 |
| 56731 | | 0.84279516 0.53395016 -0.06777583 260.64388132 |
| 56732 | | -0.13644540 0.09014345 -0.98653780 268.84741201 |
| 56733 | | Axis 0.48430666 0.87487465 0.00643470 |
| 56734 | | Axis point 50.38648022 0.00000000 130.78444062 |
| 56735 | | Rotation angle (degrees) 170.61681330 |
| 56736 | | Shift along axis 336.32856452 |
| 56737 | | |
| 56738 | | |
| 56739 | | > view matrix models |
| 56740 | | > #40,-0.53191,0.83446,0.14403,279.19,0.83752,0.54353,-0.05601,338.7,-0.12502,0.090833,-0.98799,349.49 |
| 56741 | | |
| 56742 | | > view matrix models |
| 56743 | | > #40,-0.53191,0.83446,0.14403,281.55,0.83752,0.54353,-0.05601,343.34,-0.12502,0.090833,-0.98799,350.66 |
| 56744 | | |
| 56745 | | > ui mousemode right "rotate selected models" |
| 56746 | | |
| 56747 | | > view matrix models |
| 56748 | | > #40,-0.53273,0.81883,0.21381,282.36,0.8282,0.55639,-0.067245,343.07,-0.17402,0.14125,-0.97456,350.1 |
| 56749 | | |
| 56750 | | > view matrix models |
| 56751 | | > #40,-0.59069,0.78688,0.17862,282.23,0.75978,0.61694,-0.20523,340.96,-0.27169,0.01448,-0.96228,351.34 |
| 56752 | | |
| 56753 | | > view matrix models |
| 56754 | | > #40,-0.60784,0.77483,0.17371,282.27,0.75759,0.63141,-0.16548,341.16,-0.2379,0.031016,-0.97079,351.17 |
| 56755 | | |
| 56756 | | > ui mousemode right "translate selected models" |
| 56757 | | |
| 56758 | | > view matrix models |
| 56759 | | > #40,-0.60784,0.77483,0.17371,283.1,0.75759,0.63141,-0.16548,341.45,-0.2379,0.031016,-0.97079,350.66 |
| 56760 | | |
| 56761 | | > hide #!4 models |
| 56762 | | |
| 56763 | | > select subtract #40 |
| 56764 | | |
| 56765 | | 2 models selected |
| 56766 | | |
| 56767 | | > show #!1 models |
| 56768 | | |
| 56769 | | > select add #40 |
| 56770 | | |
| 56771 | | 39508 atoms, 40254 bonds, 5000 residues, 1 model selected |
| 56772 | | |
| 56773 | | > view matrix models |
| 56774 | | > #40,-0.60784,0.77483,0.17371,282.46,0.75759,0.63141,-0.16548,341.97,-0.2379,0.031016,-0.97079,350.98 |
| 56775 | | |
| 56776 | | > select subtract #40 |
| 56777 | | |
| 56778 | | 2 models selected |
| 56779 | | |
| 56780 | | > hide #!1 models |
| 56781 | | |
| 56782 | | > show #!15 models |
| 56783 | | |
| 56784 | | > hide #!15 models |
| 56785 | | |
| 56786 | | > show #!16 models |
| 56787 | | |
| 56788 | | > fitmap #40 inMap #1 |
| 56789 | | |
| 56790 | | Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map |
| 56791 | | relion_locres_filtered_20240326_GT.mrc (#1) using 39508 atoms |
| 56792 | | average map value = 0.005223, steps = 144 |
| 56793 | | shifted from previous position = 8 |
| 56794 | | rotated from previous position = 9.35 degrees |
| 56795 | | atoms outside contour = 24973, contour level = 0.0047281 |
| 56796 | | |
| 56797 | | Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) |
| 56798 | | relative to relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 56799 | | Matrix rotation and translation |
| 56800 | | -0.52035327 0.84085371 0.14898840 220.06435873 |
| 56801 | | 0.84298688 0.53366200 -0.06766092 260.64248984 |
| 56802 | | -0.13640238 0.09038768 -0.98652140 268.85959648 |
| 56803 | | Axis 0.48445666 0.87479082 0.00653869 |
| 56804 | | Axis point 50.37526868 0.00000000 130.77574819 |
| 56805 | | Rotation angle (degrees) 170.61199384 |
| 56806 | | Shift along axis 336.37729411 |
| 56807 | | |
| 56808 | | |
| 56809 | | > fitmap #40 inMap #1 |
| 56810 | | |
| 56811 | | Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map |
| 56812 | | relion_locres_filtered_20240326_GT.mrc (#1) using 39508 atoms |
| 56813 | | average map value = 0.005223, steps = 48 |
| 56814 | | shifted from previous position = 0.0189 |
| 56815 | | rotated from previous position = 0.0144 degrees |
| 56816 | | atoms outside contour = 24978, contour level = 0.0047281 |
| 56817 | | |
| 56818 | | Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) |
| 56819 | | relative to relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 56820 | | Matrix rotation and translation |
| 56821 | | -0.52020195 0.84092692 0.14910355 220.06127059 |
| 56822 | | 0.84308960 0.53351511 -0.06753935 260.63173968 |
| 56823 | | -0.13634465 0.09057354 -0.98651234 268.87432330 |
| 56824 | | Axis 0.48453259 0.87474811 0.00662749 |
| 56825 | | Axis point 50.36493224 0.00000000 130.77083377 |
| 56826 | | Rotation angle (degrees) 170.60962523 |
| 56827 | | Shift along axis 336.39593915 |
| 56828 | | |
| 56829 | | |
| 56830 | | > show #!1 models |
| 56831 | | |
| 56832 | | > hide #!1 models |
| 56833 | | |
| 56834 | | > hide #!16 models |
| 56835 | | |
| 56836 | | > show #!16 models |
| 56837 | | |
| 56838 | | > hide #!16 models |
| 56839 | | |
| 56840 | | > show #!16 models |
| 56841 | | |
| 56842 | | > hide #!16 models |
| 56843 | | |
| 56844 | | > hide #!40 models |
| 56845 | | |
| 56846 | | > show #!40 models |
| 56847 | | |
| 56848 | | > show #!1 models |
| 56849 | | |
| 56850 | | > hide #!1 models |
| 56851 | | |
| 56852 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 56853 | | > dataset/Chimera sessions/20240710_leaf_fitting_v43_labelled.cxs" |
| 56854 | | |
| 56855 | | > hide #!40 models |
| 56856 | | |
| 56857 | | > close #11 |
| 56858 | | |
| 56859 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 56860 | | > dataset/Structure files/alphafold/GOLPH3-Q9H4A6-human.pdb" |
| 56861 | | |
| 56862 | | GOLPH3-Q9H4A6-human.pdb title: |
| 56863 | | Alphafold monomer V2.0 prediction for golgi phosphoprotein 3 (Q9H4A6) [more |
| 56864 | | info...] |
| 56865 | | |
| 56866 | | Chain information for GOLPH3-Q9H4A6-human.pdb #11 |
| 56867 | | --- |
| 56868 | | Chain | Description | UniProt |
| 56869 | | A | golgi phosphoprotein 3 | GOLP3_HUMAN 1-298 |
| 56870 | | |
| 56871 | | |
| 56872 | | > ui tool show Matchmaker |
| 56873 | | |
| 56874 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 56875 | | QTBUG which explains how to reproduce. |
| 56876 | | |
| 56877 | | > matchmaker #11 to #24 |
| 56878 | | |
| 56879 | | Parameters |
| 56880 | | --- |
| 56881 | | Chain pairing | bb |
| 56882 | | Alignment algorithm | Needleman-Wunsch |
| 56883 | | Similarity matrix | BLOSUM-62 |
| 56884 | | SS fraction | 0.3 |
| 56885 | | Gap open (HH/SS/other) | 18/18/6 |
| 56886 | | Gap extend | 1 |
| 56887 | | SS matrix | | | H | S | O |
| 56888 | | ---|---|---|--- |
| 56889 | | H | 6 | -9 | -6 |
| 56890 | | S | | 6 | -6 |
| 56891 | | O | | | 4 |
| 56892 | | Iteration cutoff | 2 |
| 56893 | | |
| 56894 | | Matchmaker 3kn1_Golph3_xtal.cif, chain A (#24) with GOLPH3-Q9H4A6-human.pdb, |
| 56895 | | chain A (#11), sequence alignment score = 1244.7 |
| 56896 | | RMSD between 221 pruned atom pairs is 0.675 angstroms; (across all 239 pairs: |
| 56897 | | 1.219) |
| 56898 | | |
| 56899 | | |
| 56900 | | > color #11 #b21effff |
| 56901 | | |
| 56902 | | > show #!24 models |
| 56903 | | |
| 56904 | | > ui mousemode right select |
| 56905 | | |
| 56906 | | Drag select of 30 residues |
| 56907 | | |
| 56908 | | > delete sel |
| 56909 | | |
| 56910 | | > show #!1 models |
| 56911 | | |
| 56912 | | > hide #!1 models |
| 56913 | | |
| 56914 | | Drag select of 13 residues |
| 56915 | | |
| 56916 | | > delete sel |
| 56917 | | |
| 56918 | | > show #!1 models |
| 56919 | | |
| 56920 | | > hide #!1 models |
| 56921 | | |
| 56922 | | Drag select of 2 residues |
| 56923 | | |
| 56924 | | > select up |
| 56925 | | |
| 56926 | | 147 atoms, 146 bonds, 18 residues, 1 model selected |
| 56927 | | |
| 56928 | | > select down |
| 56929 | | |
| 56930 | | 19 atoms, 2 residues, 1 model selected |
| 56931 | | |
| 56932 | | > delete sel |
| 56933 | | |
| 56934 | | > show #!1 models |
| 56935 | | |
| 56936 | | > hide #!1 models |
| 56937 | | |
| 56938 | | Drag select of 1 residues |
| 56939 | | |
| 56940 | | > delete sel |
| 56941 | | |
| 56942 | | > show #!1 models |
| 56943 | | |
| 56944 | | > hide #!1 models |
| 56945 | | |
| 56946 | | > hide #11 models |
| 56947 | | |
| 56948 | | > show #11 models |
| 56949 | | |
| 56950 | | > hide #!24 models |
| 56951 | | |
| 56952 | | > show #!24 models |
| 56953 | | |
| 56954 | | > show #!1 models |
| 56955 | | |
| 56956 | | > hide #!1 models |
| 56957 | | |
| 56958 | | > rename #11 GOLPH3-Q9H4A6-human_Q47-.pdb |
| 56959 | | |
| 56960 | | > rename #11 GOLPH3-Q9H4A6-human_Q47-K298.pdb |
| 56961 | | |
| 56962 | | > show #!1 models |
| 56963 | | |
| 56964 | | > hide #11 models |
| 56965 | | |
| 56966 | | > show #11 models |
| 56967 | | |
| 56968 | | > hide #!24 models |
| 56969 | | |
| 56970 | | > show #!24 models |
| 56971 | | |
| 56972 | | > hide #!24 models |
| 56973 | | |
| 56974 | | > show #!24 models |
| 56975 | | |
| 56976 | | > hide #11 models |
| 56977 | | |
| 56978 | | > hide #!24 models |
| 56979 | | |
| 56980 | | > show #11 models |
| 56981 | | |
| 56982 | | > hide #11 models |
| 56983 | | |
| 56984 | | > close #5 |
| 56985 | | |
| 56986 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 56987 | | > dataset/Structure files/alphafold/Arf1-P84077-human.pdb" |
| 56988 | | |
| 56989 | | Arf1-P84077-human.pdb title: |
| 56990 | | Alphafold monomer V2.0 prediction for adp-ribosylation factor 1 (P84077) [more |
| 56991 | | info...] |
| 56992 | | |
| 56993 | | Chain information for Arf1-P84077-human.pdb #5 |
| 56994 | | --- |
| 56995 | | Chain | Description | UniProt |
| 56996 | | A | adp-ribosylation factor 1 | ARF1_HUMAN 1-181 |
| 56997 | | |
| 56998 | | |
| 56999 | | > color #5 #ff269dff |
| 57000 | | |
| 57001 | | > close #6 |
| 57002 | | |
| 57003 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 57004 | | > dataset/Structure files/alphafold/Arf1-P84077-human.pdb" |
| 57005 | | |
| 57006 | | Arf1-P84077-human.pdb title: |
| 57007 | | Alphafold monomer V2.0 prediction for adp-ribosylation factor 1 (P84077) [more |
| 57008 | | info...] |
| 57009 | | |
| 57010 | | Chain information for Arf1-P84077-human.pdb #6 |
| 57011 | | --- |
| 57012 | | Chain | Description | UniProt |
| 57013 | | A | adp-ribosylation factor 1 | ARF1_HUMAN 1-181 |
| 57014 | | |
| 57015 | | |
| 57016 | | > color #6 #ff15a8ff |
| 57017 | | |
| 57018 | | > show #!26.1 models |
| 57019 | | |
| 57020 | | > hide #!26.1 models |
| 57021 | | |
| 57022 | | > show #!26.1 models |
| 57023 | | |
| 57024 | | > show #!35 models |
| 57025 | | |
| 57026 | | > show #!36 models |
| 57027 | | |
| 57028 | | > show #!37 models |
| 57029 | | |
| 57030 | | > hide #6 models |
| 57031 | | |
| 57032 | | > hide #5 models |
| 57033 | | |
| 57034 | | > ui tool show Matchmaker |
| 57035 | | |
| 57036 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 57037 | | QTBUG which explains how to reproduce. |
| 57038 | | |
| 57039 | | > matchmaker #5 to #26.1 |
| 57040 | | |
| 57041 | | Parameters |
| 57042 | | --- |
| 57043 | | Chain pairing | bb |
| 57044 | | Alignment algorithm | Needleman-Wunsch |
| 57045 | | Similarity matrix | BLOSUM-62 |
| 57046 | | SS fraction | 0.3 |
| 57047 | | Gap open (HH/SS/other) | 18/18/6 |
| 57048 | | Gap extend | 1 |
| 57049 | | SS matrix | | | H | S | O |
| 57050 | | ---|---|---|--- |
| 57051 | | H | 6 | -9 | -6 |
| 57052 | | S | | 6 | -6 |
| 57053 | | O | | | 4 |
| 57054 | | Iteration cutoff | 2 |
| 57055 | | |
| 57056 | | Matchmaker 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A, chain A (#26.1) with |
| 57057 | | Arf1-P84077-human.pdb, chain A (#5), sequence alignment score = 714.3 |
| 57058 | | RMSD between 158 pruned atom pairs is 0.857 angstroms; (across all 159 pairs: |
| 57059 | | 0.877) |
| 57060 | | |
| 57061 | | |
| 57062 | | > show #5 models |
| 57063 | | |
| 57064 | | > ui tool show Matchmaker |
| 57065 | | |
| 57066 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 57067 | | QTBUG which explains how to reproduce. |
| 57068 | | |
| 57069 | | > matchmaker #6 to #35 |
| 57070 | | |
| 57071 | | Parameters |
| 57072 | | --- |
| 57073 | | Chain pairing | bb |
| 57074 | | Alignment algorithm | Needleman-Wunsch |
| 57075 | | Similarity matrix | BLOSUM-62 |
| 57076 | | SS fraction | 0.3 |
| 57077 | | Gap open (HH/SS/other) | 18/18/6 |
| 57078 | | Gap extend | 1 |
| 57079 | | SS matrix | | | H | S | O |
| 57080 | | ---|---|---|--- |
| 57081 | | H | 6 | -9 | -6 |
| 57082 | | S | | 6 | -6 |
| 57083 | | O | | | 4 |
| 57084 | | Iteration cutoff | 2 |
| 57085 | | |
| 57086 | | Matchmaker copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A, chain A (#35) |
| 57087 | | with Arf1-P84077-human.pdb, chain A (#6), sequence alignment score = 714.3 |
| 57088 | | RMSD between 158 pruned atom pairs is 0.857 angstroms; (across all 159 pairs: |
| 57089 | | 0.877) |
| 57090 | | |
| 57091 | | |
| 57092 | | > hide #5 models |
| 57093 | | |
| 57094 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 57095 | | > dataset/Structure files/alphafold/Arf1-P84077-human.pdb" |
| 57096 | | |
| 57097 | | Arf1-P84077-human.pdb title: |
| 57098 | | Alphafold monomer V2.0 prediction for adp-ribosylation factor 1 (P84077) [more |
| 57099 | | info...] |
| 57100 | | |
| 57101 | | Chain information for Arf1-P84077-human.pdb #22 |
| 57102 | | --- |
| 57103 | | Chain | Description | UniProt |
| 57104 | | A | adp-ribosylation factor 1 | ARF1_HUMAN 1-181 |
| 57105 | | |
| 57106 | | |
| 57107 | | > color #22 #ff15a8ff |
| 57108 | | |
| 57109 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 57110 | | > dataset/Structure files/alphafold/Arf1-P84077-human.pdb" |
| 57111 | | |
| 57112 | | Arf1-P84077-human.pdb title: |
| 57113 | | Alphafold monomer V2.0 prediction for adp-ribosylation factor 1 (P84077) [more |
| 57114 | | info...] |
| 57115 | | |
| 57116 | | Chain information for Arf1-P84077-human.pdb #23 |
| 57117 | | --- |
| 57118 | | Chain | Description | UniProt |
| 57119 | | A | adp-ribosylation factor 1 | ARF1_HUMAN 1-181 |
| 57120 | | |
| 57121 | | |
| 57122 | | > color #23 #ff00b2ff |
| 57123 | | |
| 57124 | | > select add #22 |
| 57125 | | |
| 57126 | | 1457 atoms, 1483 bonds, 181 residues, 1 model selected |
| 57127 | | |
| 57128 | | > select subtract #22 |
| 57129 | | |
| 57130 | | Nothing selected |
| 57131 | | |
| 57132 | | > ui tool show Matchmaker |
| 57133 | | |
| 57134 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 57135 | | QTBUG which explains how to reproduce. |
| 57136 | | |
| 57137 | | > matchmaker #22 to #36 |
| 57138 | | |
| 57139 | | Parameters |
| 57140 | | --- |
| 57141 | | Chain pairing | bb |
| 57142 | | Alignment algorithm | Needleman-Wunsch |
| 57143 | | Similarity matrix | BLOSUM-62 |
| 57144 | | SS fraction | 0.3 |
| 57145 | | Gap open (HH/SS/other) | 18/18/6 |
| 57146 | | Gap extend | 1 |
| 57147 | | SS matrix | | | H | S | O |
| 57148 | | ---|---|---|--- |
| 57149 | | H | 6 | -9 | -6 |
| 57150 | | S | | 6 | -6 |
| 57151 | | O | | | 4 |
| 57152 | | Iteration cutoff | 2 |
| 57153 | | |
| 57154 | | Matchmaker copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A, chain A (#36) |
| 57155 | | with Arf1-P84077-human.pdb, chain A (#22), sequence alignment score = 714.3 |
| 57156 | | RMSD between 158 pruned atom pairs is 0.857 angstroms; (across all 159 pairs: |
| 57157 | | 0.877) |
| 57158 | | |
| 57159 | | |
| 57160 | | > ui tool show Matchmaker |
| 57161 | | |
| 57162 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 57163 | | QTBUG which explains how to reproduce. |
| 57164 | | |
| 57165 | | > matchmaker #23 to #37 |
| 57166 | | |
| 57167 | | Parameters |
| 57168 | | --- |
| 57169 | | Chain pairing | bb |
| 57170 | | Alignment algorithm | Needleman-Wunsch |
| 57171 | | Similarity matrix | BLOSUM-62 |
| 57172 | | SS fraction | 0.3 |
| 57173 | | Gap open (HH/SS/other) | 18/18/6 |
| 57174 | | Gap extend | 1 |
| 57175 | | SS matrix | | | H | S | O |
| 57176 | | ---|---|---|--- |
| 57177 | | H | 6 | -9 | -6 |
| 57178 | | S | | 6 | -6 |
| 57179 | | O | | | 4 |
| 57180 | | Iteration cutoff | 2 |
| 57181 | | |
| 57182 | | Matchmaker copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A, chain A (#37) |
| 57183 | | with Arf1-P84077-human.pdb, chain A (#23), sequence alignment score = 714.3 |
| 57184 | | RMSD between 158 pruned atom pairs is 0.857 angstroms; (across all 159 pairs: |
| 57185 | | 0.877) |
| 57186 | | |
| 57187 | | |
| 57188 | | > hide #22 models |
| 57189 | | |
| 57190 | | > hide #23 models |
| 57191 | | |
| 57192 | | > hide #!26.1 models |
| 57193 | | |
| 57194 | | > hide #!35 models |
| 57195 | | |
| 57196 | | > hide #!36 models |
| 57197 | | |
| 57198 | | > hide #!37 models |
| 57199 | | |
| 57200 | | > show #!26.1 models |
| 57201 | | |
| 57202 | | > show #5 models |
| 57203 | | |
| 57204 | | > hide #!1 models |
| 57205 | | |
| 57206 | | > show #!1 models |
| 57207 | | |
| 57208 | | > ui tool show "Side View" |
| 57209 | | |
| 57210 | | > volume #1 level 0.004728 |
| 57211 | | |
| 57212 | | > hide #!1 models |
| 57213 | | |
| 57214 | | > hide #5 models |
| 57215 | | |
| 57216 | | > show #5 models |
| 57217 | | |
| 57218 | | > hide #5 models |
| 57219 | | |
| 57220 | | > show #6 models |
| 57221 | | |
| 57222 | | > hide #6 models |
| 57223 | | |
| 57224 | | > show #5 models |
| 57225 | | |
| 57226 | | > show #!1 models |
| 57227 | | |
| 57228 | | > hide #5 models |
| 57229 | | |
| 57230 | | > hide #!26.1 models |
| 57231 | | |
| 57232 | | > show #6 models |
| 57233 | | |
| 57234 | | > show #!35 models |
| 57235 | | |
| 57236 | | > hide #!35 models |
| 57237 | | |
| 57238 | | > show #!36 models |
| 57239 | | |
| 57240 | | > hide #6 models |
| 57241 | | |
| 57242 | | > show #22 models |
| 57243 | | |
| 57244 | | > hide #22 models |
| 57245 | | |
| 57246 | | > show #23 models |
| 57247 | | |
| 57248 | | > hide #!36 models |
| 57249 | | |
| 57250 | | > show #!37 models |
| 57251 | | |
| 57252 | | > hide #!37 models |
| 57253 | | |
| 57254 | | > show #5 models |
| 57255 | | |
| 57256 | | > hide #23 models |
| 57257 | | |
| 57258 | | > fitmap #5 inMap #1 |
| 57259 | | |
| 57260 | | Fit molecule Arf1-P84077-human.pdb (#5) to map |
| 57261 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1457 atoms |
| 57262 | | average map value = 0.008207, steps = 56 |
| 57263 | | shifted from previous position = 1.94 |
| 57264 | | rotated from previous position = 3.57 degrees |
| 57265 | | atoms outside contour = 426, contour level = 0.0047281 |
| 57266 | | |
| 57267 | | Position of Arf1-P84077-human.pdb (#5) relative to |
| 57268 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 57269 | | Matrix rotation and translation |
| 57270 | | -0.18942851 0.67637478 -0.71178227 323.61574599 |
| 57271 | | 0.98186050 0.12444879 -0.14304705 261.78874814 |
| 57272 | | -0.00817297 -0.72596809 -0.68767982 255.09048932 |
| 57273 | | Axis -0.60505182 -0.73032205 0.31708359 |
| 57274 | | Axis point -8.53082974 0.00000000 208.70218842 |
| 57275 | | Rotation angle (degrees) 151.20274669 |
| 57276 | | Shift along axis -306.10938398 |
| 57277 | | |
| 57278 | | |
| 57279 | | > hide #!25 models |
| 57280 | | |
| 57281 | | > hide #!26 models |
| 57282 | | |
| 57283 | | > hide #!27 models |
| 57284 | | |
| 57285 | | > hide #!32 models |
| 57286 | | |
| 57287 | | > hide #5 models |
| 57288 | | |
| 57289 | | > show #!30 models |
| 57290 | | |
| 57291 | | > show #!2 models |
| 57292 | | |
| 57293 | | > show #27.2 models |
| 57294 | | |
| 57295 | | > show #27.1 models |
| 57296 | | |
| 57297 | | > show #32.2 models |
| 57298 | | |
| 57299 | | > show #32.1 models |
| 57300 | | |
| 57301 | | > show #!4 models |
| 57302 | | |
| 57303 | | > show #!26.1 models |
| 57304 | | |
| 57305 | | > show #!35 models |
| 57306 | | |
| 57307 | | > show #!36 models |
| 57308 | | |
| 57309 | | > show #!37 models |
| 57310 | | |
| 57311 | | > show #!40 models |
| 57312 | | |
| 57313 | | > show #28 models |
| 57314 | | |
| 57315 | | > show #26.3 models |
| 57316 | | |
| 57317 | | > show #!29 models |
| 57318 | | |
| 57319 | | > show #!26.2 models |
| 57320 | | |
| 57321 | | > show #!24 models |
| 57322 | | |
| 57323 | | > show #!18 models |
| 57324 | | |
| 57325 | | > show #!19 models |
| 57326 | | |
| 57327 | | > show #!20 models |
| 57328 | | |
| 57329 | | > hide #!20 models |
| 57330 | | |
| 57331 | | > show #!20 models |
| 57332 | | |
| 57333 | | > hide #!20 models |
| 57334 | | |
| 57335 | | > show #!21 models |
| 57336 | | |
| 57337 | | > hide #!21 models |
| 57338 | | |
| 57339 | | > show #!13 models |
| 57340 | | |
| 57341 | | > show #!9 models |
| 57342 | | |
| 57343 | | > volume #1 level 0.004557 |
| 57344 | | |
| 57345 | | > hide #!1 models |
| 57346 | | |
| 57347 | | > show #!1 models |
| 57348 | | |
| 57349 | | > hide #!4 models |
| 57350 | | |
| 57351 | | > show #!4 models |
| 57352 | | |
| 57353 | | > show #!16 models |
| 57354 | | |
| 57355 | | > hide #!4 models |
| 57356 | | |
| 57357 | | > hide #!16 models |
| 57358 | | |
| 57359 | | > show #!4 models |
| 57360 | | |
| 57361 | | > volume #1 level 0.004045 |
| 57362 | | |
| 57363 | | > view orient |
| 57364 | | |
| 57365 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 57366 | | > dataset/Chimera sessions/20240710_leaf_fitting_xtal_alphafold_fitting.cxs" |
| 57367 | | |
| 57368 | | > hide #!1 models |
| 57369 | | |
| 57370 | | > show #25.1 models |
| 57371 | | |
| 57372 | | > hide #25.1 models |
| 57373 | | |
| 57374 | | > show #25.1 models |
| 57375 | | |
| 57376 | | > hide #25.1 models |
| 57377 | | |
| 57378 | | > show #25.1 models |
| 57379 | | |
| 57380 | | > hide #25.1 models |
| 57381 | | |
| 57382 | | > show #25.1 models |
| 57383 | | |
| 57384 | | > hide #25.1 models |
| 57385 | | |
| 57386 | | > show #25.1 models |
| 57387 | | |
| 57388 | | > hide #25.1 models |
| 57389 | | |
| 57390 | | > show #25.1 models |
| 57391 | | |
| 57392 | | > hide #25.1 models |
| 57393 | | |
| 57394 | | > show #!25.2 models |
| 57395 | | |
| 57396 | | > hide #!25.2 models |
| 57397 | | |
| 57398 | | > show #!25.2 models |
| 57399 | | |
| 57400 | | > hide #!25.2 models |
| 57401 | | |
| 57402 | | > show #25.3 models |
| 57403 | | |
| 57404 | | > hide #25.3 models |
| 57405 | | |
| 57406 | | > show #25.3 models |
| 57407 | | |
| 57408 | | > hide #25.3 models |
| 57409 | | |
| 57410 | | > show #!25.6 models |
| 57411 | | |
| 57412 | | > hide #!25.6 models |
| 57413 | | |
| 57414 | | > show #!25.6 models |
| 57415 | | |
| 57416 | | > hide #!25.6 models |
| 57417 | | |
| 57418 | | > show #!1 models |
| 57419 | | |
| 57420 | | > view orient |
| 57421 | | |
| 57422 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 57423 | | > dataset/Chimera sessions/20240710_leaf_fitting_xtal_alphafold_fitting.cxs" |
| 57424 | | |
| 57425 | | > hide #!2 models |
| 57426 | | |
| 57427 | | > hide #!4 models |
| 57428 | | |
| 57429 | | > hide #!9 models |
| 57430 | | |
| 57431 | | > show #!9 models |
| 57432 | | |
| 57433 | | > show #!3 models |
| 57434 | | |
| 57435 | | > show #!7 models |
| 57436 | | |
| 57437 | | > show #5 models |
| 57438 | | |
| 57439 | | > show #6 models |
| 57440 | | |
| 57441 | | > show #!15 models |
| 57442 | | |
| 57443 | | > show #!16 models |
| 57444 | | |
| 57445 | | > show #11 models |
| 57446 | | |
| 57447 | | > show #10 models |
| 57448 | | |
| 57449 | | > show #12 models |
| 57450 | | |
| 57451 | | > hide #!24 models |
| 57452 | | |
| 57453 | | > hide #!26.1 models |
| 57454 | | |
| 57455 | | > show #23 models |
| 57456 | | |
| 57457 | | > show #22 models |
| 57458 | | |
| 57459 | | > hide #!26.2 models |
| 57460 | | |
| 57461 | | > hide #26.3 models |
| 57462 | | |
| 57463 | | > hide #27.1 models |
| 57464 | | |
| 57465 | | > hide #27.2 models |
| 57466 | | |
| 57467 | | > hide #28 models |
| 57468 | | |
| 57469 | | > hide #!29 models |
| 57470 | | |
| 57471 | | > hide #!30 models |
| 57472 | | |
| 57473 | | > hide #32.1 models |
| 57474 | | |
| 57475 | | > hide #32.2 models |
| 57476 | | |
| 57477 | | > hide #!35 models |
| 57478 | | |
| 57479 | | > hide #!36 models |
| 57480 | | |
| 57481 | | > hide #!37 models |
| 57482 | | |
| 57483 | | > show #!14 models |
| 57484 | | |
| 57485 | | > show #!17 models |
| 57486 | | |
| 57487 | | > show #!20 models |
| 57488 | | |
| 57489 | | > show #!21 models |
| 57490 | | |
| 57491 | | > hide #!13 models |
| 57492 | | |
| 57493 | | > show #!13 models |
| 57494 | | |
| 57495 | | > hide #!21 models |
| 57496 | | |
| 57497 | | > show #!21 models |
| 57498 | | |
| 57499 | | > hide #!9 models |
| 57500 | | |
| 57501 | | > show #!9 models |
| 57502 | | |
| 57503 | | > color #5 #ff00b2ff |
| 57504 | | |
| 57505 | | > color #22 #ff3cb7ff |
| 57506 | | |
| 57507 | | > color #26.1 #ff00bcff |
| 57508 | | |
| 57509 | | > color #35 #ff00c6ff |
| 57510 | | |
| 57511 | | > color #36 #fe00cfff |
| 57512 | | |
| 57513 | | > color #37 #fd00d7ff |
| 57514 | | |
| 57515 | | > view orient |
| 57516 | | |
| 57517 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 57518 | | > dataset/Chimera sessions/20240710_leaf_fitting_alphafold_only_fitting.cxs" |
| 57519 | | |
| 57520 | | > hide #!1 models |
| 57521 | | |
| 57522 | | > show #25.1 models |
| 57523 | | |
| 57524 | | > hide #25.1 models |
| 57525 | | |
| 57526 | | > show #!25.2 models |
| 57527 | | |
| 57528 | | > hide #!25.2 models |
| 57529 | | |
| 57530 | | > show #25.3 models |
| 57531 | | |
| 57532 | | > hide #25.3 models |
| 57533 | | |
| 57534 | | > show #25.3 models |
| 57535 | | |
| 57536 | | > hide #25.3 models |
| 57537 | | |
| 57538 | | > show #!25.6 models |
| 57539 | | |
| 57540 | | > hide #!25.6 models |
| 57541 | | |
| 57542 | | > close #25 |
| 57543 | | |
| 57544 | | > show #!1 models |
| 57545 | | |
| 57546 | | > view orient |
| 57547 | | |
| 57548 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 57549 | | > dataset/Chimera sessions/20240710_leaf_fitting_alphafold_only_fitting.cxs" |
| 57550 | | |
| 57551 | | ——— End of log from Wed Jul 10 16:07:37 2024 ——— |
| 57552 | | |
| 57553 | | opened ChimeraX session |
| 57554 | | |
| 57555 | | > show #8 models |
| 57556 | | |
| 57557 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 57558 | | > dataset/Chimera sessions/20240710_leaf_fitting_alphafold_only_fitting.cxs" |
| 57559 | | |
| 57560 | | ——— End of log from Wed Jul 10 16:36:09 2024 ——— |
| 57561 | | |
| 57562 | | opened ChimeraX session |
| 57563 | | |
| 57564 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 57565 | | > dataset/Structure files/alphafold 3 /GT 20240604 |
| 57566 | | > /fold_2024_06_04_12_31/fold_2024_06_04_12_31_model_0.cif" |
| 57567 | | |
| 57568 | | Chain information for fold_2024_06_04_12_31_model_0.cif #25 |
| 57569 | | --- |
| 57570 | | Chain | Description |
| 57571 | | A | . |
| 57572 | | B | . |
| 57573 | | C | . |
| 57574 | | D | . |
| 57575 | | E | . |
| 57576 | | F | . |
| 57577 | | G H | . |
| 57578 | | |
| 57579 | | |
| 57580 | | > select add #25 |
| 57581 | | |
| 57582 | | 39611 atoms, 40368 bonds, 5006 residues, 1 model selected |
| 57583 | | |
| 57584 | | > hide sel atoms |
| 57585 | | |
| 57586 | | > show sel cartoons |
| 57587 | | |
| 57588 | | > ui mousemode right "translate selected models" |
| 57589 | | |
| 57590 | | > view matrix models #25,1,0,0,374.94,0,1,0,307.54,0,0,1,48.791 |
| 57591 | | |
| 57592 | | > view matrix models #25,1,0,0,363.27,0,1,0,224.54,0,0,1,363.61 |
| 57593 | | |
| 57594 | | > view matrix models #25,1,0,0,182.77,0,1,0,315.74,0,0,1,357.5 |
| 57595 | | |
| 57596 | | > color #25/A blue |
| 57597 | | |
| 57598 | | > color #25/H deep pink |
| 57599 | | |
| 57600 | | > color #25/G deep pink |
| 57601 | | |
| 57602 | | > color #25/F yellow |
| 57603 | | |
| 57604 | | > color #25/B dark green |
| 57605 | | |
| 57606 | | > color #25/C cyan |
| 57607 | | |
| 57608 | | > color #25/D chocolate |
| 57609 | | |
| 57610 | | > color #25/E lime green |
| 57611 | | |
| 57612 | | > color #25/C cyan |
| 57613 | | |
| 57614 | | > select subtract #25 |
| 57615 | | |
| 57616 | | Nothing selected |
| 57617 | | |
| 57618 | | > select #25/A |
| 57619 | | |
| 57620 | | 9742 atoms, 9961 bonds, 1224 residues, 1 model selected |
| 57621 | | |
| 57622 | | > cartoon hide sel |
| 57623 | | |
| 57624 | | > select #25/B |
| 57625 | | |
| 57626 | | 7501 atoms, 7619 bonds, 953 residues, 1 model selected |
| 57627 | | |
| 57628 | | > cartoon hide sel |
| 57629 | | |
| 57630 | | > select #25/C |
| 57631 | | |
| 57632 | | 7214 atoms, 7373 bonds, 905 residues, 1 model selected |
| 57633 | | |
| 57634 | | > cartoon hide sel |
| 57635 | | |
| 57636 | | > select #25/H |
| 57637 | | |
| 57638 | | 1445 atoms, 1472 bonds, 181 residues, 1 model selected |
| 57639 | | |
| 57640 | | > cartoon hide sel |
| 57641 | | |
| 57642 | | > select #25/G |
| 57643 | | |
| 57644 | | 1445 atoms, 1472 bonds, 181 residues, 1 model selected |
| 57645 | | |
| 57646 | | > cartoon hide sel |
| 57647 | | |
| 57648 | | > select #25/F |
| 57649 | | |
| 57650 | | 1420 atoms, 1441 bonds, 177 residues, 1 model selected |
| 57651 | | |
| 57652 | | > cartoon hide sel |
| 57653 | | |
| 57654 | | > select #25/D |
| 57655 | | |
| 57656 | | 4014 atoms, 4083 bonds, 511 residues, 1 model selected |
| 57657 | | |
| 57658 | | > cartoon hide sel |
| 57659 | | |
| 57660 | | > select #25/E |
| 57661 | | |
| 57662 | | 6830 atoms, 6947 bonds, 874 residues, 1 model selected |
| 57663 | | |
| 57664 | | > cartoon hide sel |
| 57665 | | |
| 57666 | | > select #25/B |
| 57667 | | |
| 57668 | | 7501 atoms, 7619 bonds, 953 residues, 1 model selected |
| 57669 | | |
| 57670 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 57671 | | > dataset/Structure files/alphafold 3 /GT 20240604 |
| 57672 | | > /fold_2024_06_04_12_31/20240710_leaf_fitting_alphafold_only_withAF3.cxs" |
| 57673 | | |
| 57674 | | > select add #25 |
| 57675 | | |
| 57676 | | 39611 atoms, 40368 bonds, 5006 residues, 1 model selected |
| 57677 | | |
| 57678 | | > select subtract #25 |
| 57679 | | |
| 57680 | | Nothing selected |
| 57681 | | |
| 57682 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 57683 | | QTBUG which explains how to reproduce. |
| 57684 | | |
| 57685 | | > hide #25 models |
| 57686 | | |
| 57687 | | > show #25 models |
| 57688 | | |
| 57689 | | > hide #25 models |
| 57690 | | |
| 57691 | | > show #25 models |
| 57692 | | |
| 57693 | | > select #25/B |
| 57694 | | |
| 57695 | | 7501 atoms, 7619 bonds, 953 residues, 1 model selected |
| 57696 | | |
| 57697 | | > cartoon sel |
| 57698 | | |
| 57699 | | > ui tool show Matchmaker |
| 57700 | | |
| 57701 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 57702 | | QTBUG which explains how to reproduce. |
| 57703 | | |
| 57704 | | > matchmaker #25 to #4 |
| 57705 | | |
| 57706 | | Parameters |
| 57707 | | --- |
| 57708 | | Chain pairing | bb |
| 57709 | | Alignment algorithm | Needleman-Wunsch |
| 57710 | | Similarity matrix | BLOSUM-62 |
| 57711 | | SS fraction | 0.3 |
| 57712 | | Gap open (HH/SS/other) | 18/18/6 |
| 57713 | | Gap extend | 1 |
| 57714 | | SS matrix | | | H | S | O |
| 57715 | | ---|---|---|--- |
| 57716 | | H | 6 | -9 | -6 |
| 57717 | | S | | 6 | -6 |
| 57718 | | O | | | 4 |
| 57719 | | Iteration cutoff | 2 |
| 57720 | | |
| 57721 | | Matchmaker CopB_Q9JIF7_P395-L953.pdb, chain A (#4) with |
| 57722 | | fold_2024_06_04_12_31_model_0.cif, chain B (#25), sequence alignment score = |
| 57723 | | 4122.5 |
| 57724 | | RMSD between 165 pruned atom pairs is 1.015 angstroms; (across all 520 pairs: |
| 57725 | | 5.012) |
| 57726 | | |
| 57727 | | |
| 57728 | | > select add #25 |
| 57729 | | |
| 57730 | | 39611 atoms, 40368 bonds, 5006 residues, 1 model selected |
| 57731 | | |
| 57732 | | > select subtract #25 |
| 57733 | | |
| 57734 | | Nothing selected |
| 57735 | | |
| 57736 | | > select add #25 |
| 57737 | | |
| 57738 | | 39611 atoms, 40368 bonds, 5006 residues, 1 model selected |
| 57739 | | |
| 57740 | | > select subtract #25 |
| 57741 | | |
| 57742 | | Nothing selected |
| 57743 | | |
| 57744 | | > hide #!3 models |
| 57745 | | |
| 57746 | | > hide #5 models |
| 57747 | | |
| 57748 | | > hide #6 models |
| 57749 | | |
| 57750 | | > hide #!7 models |
| 57751 | | |
| 57752 | | > hide #8 models |
| 57753 | | |
| 57754 | | > hide #!9 models |
| 57755 | | |
| 57756 | | > hide #10 models |
| 57757 | | |
| 57758 | | > show #!4 models |
| 57759 | | |
| 57760 | | > hide #11 models |
| 57761 | | |
| 57762 | | > hide #12 models |
| 57763 | | |
| 57764 | | > hide #!14 models |
| 57765 | | |
| 57766 | | > hide #!13 models |
| 57767 | | |
| 57768 | | > hide #!4 models |
| 57769 | | |
| 57770 | | > hide #!17 models |
| 57771 | | |
| 57772 | | > hide #!18 models |
| 57773 | | |
| 57774 | | > hide #!19 models |
| 57775 | | |
| 57776 | | > hide #!20 models |
| 57777 | | |
| 57778 | | > hide #!21 models |
| 57779 | | |
| 57780 | | > hide #23 models |
| 57781 | | |
| 57782 | | > hide #22 models |
| 57783 | | |
| 57784 | | > hide #!1 models |
| 57785 | | |
| 57786 | | > hide #!40 models |
| 57787 | | |
| 57788 | | > hide #!16 models |
| 57789 | | |
| 57790 | | > show #!16 models |
| 57791 | | |
| 57792 | | > hide #!16 models |
| 57793 | | |
| 57794 | | > hide #!15 models |
| 57795 | | |
| 57796 | | > show #!15 models |
| 57797 | | |
| 57798 | | > hide #!15 models |
| 57799 | | |
| 57800 | | > show #!15 models |
| 57801 | | |
| 57802 | | > hide #!15 models |
| 57803 | | |
| 57804 | | > show #!15 models |
| 57805 | | |
| 57806 | | > hide #!15 models |
| 57807 | | |
| 57808 | | > show #!15 models |
| 57809 | | |
| 57810 | | > hide #!15 models |
| 57811 | | |
| 57812 | | > hide #25 models |
| 57813 | | |
| 57814 | | > show #25 models |
| 57815 | | |
| 57816 | | > show #!1 models |
| 57817 | | |
| 57818 | | > show #!16 models |
| 57819 | | |
| 57820 | | > hide #!16 models |
| 57821 | | |
| 57822 | | > show #!16 models |
| 57823 | | |
| 57824 | | > hide #!16 models |
| 57825 | | |
| 57826 | | > show #!16 models |
| 57827 | | |
| 57828 | | > hide #!1 models |
| 57829 | | |
| 57830 | | > show #!1 models |
| 57831 | | |
| 57832 | | > hide #!16 models |
| 57833 | | |
| 57834 | | > show #!16 models |
| 57835 | | |
| 57836 | | > hide #!16 models |
| 57837 | | |
| 57838 | | > show #!16 models |
| 57839 | | |
| 57840 | | > hide #!16 models |
| 57841 | | |
| 57842 | | > show #!16 models |
| 57843 | | |
| 57844 | | > hide #!16 models |
| 57845 | | |
| 57846 | | > show #!16 models |
| 57847 | | |
| 57848 | | > hide #!16 models |
| 57849 | | |
| 57850 | | > volume #1 level 0.003845 |
| 57851 | | |
| 57852 | | > ui tool show Matchmaker |
| 57853 | | |
| 57854 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 57855 | | QTBUG which explains how to reproduce. |
| 57856 | | |
| 57857 | | > matchmaker #25 to #15 |
| 57858 | | |
| 57859 | | Parameters |
| 57860 | | --- |
| 57861 | | Chain pairing | bb |
| 57862 | | Alignment algorithm | Needleman-Wunsch |
| 57863 | | Similarity matrix | BLOSUM-62 |
| 57864 | | SS fraction | 0.3 |
| 57865 | | Gap open (HH/SS/other) | 18/18/6 |
| 57866 | | Gap extend | 1 |
| 57867 | | SS matrix | | | H | S | O |
| 57868 | | ---|---|---|--- |
| 57869 | | H | 6 | -9 | -6 |
| 57870 | | S | | 6 | -6 |
| 57871 | | O | | | 4 |
| 57872 | | Iteration cutoff | 2 |
| 57873 | | |
| 57874 | | Matchmaker CopB_ Q9JIF7_G23-F394.pdb, chain A (#15) with |
| 57875 | | fold_2024_06_04_12_31_model_0.cif, chain B (#25), sequence alignment score = |
| 57876 | | 3974.9 |
| 57877 | | RMSD between 223 pruned atom pairs is 0.851 angstroms; (across all 372 pairs: |
| 57878 | | 3.614) |
| 57879 | | |
| 57880 | | |
| 57881 | | > show #!15 models |
| 57882 | | |
| 57883 | | > hide #!15 models |
| 57884 | | |
| 57885 | | > show #!15 models |
| 57886 | | |
| 57887 | | > hide #25 models |
| 57888 | | |
| 57889 | | > show #25 models |
| 57890 | | |
| 57891 | | > hide #!1 models |
| 57892 | | |
| 57893 | | > show #!1 models |
| 57894 | | |
| 57895 | | > show #!16 models |
| 57896 | | |
| 57897 | | > hide #!16 models |
| 57898 | | |
| 57899 | | > show #!16 models |
| 57900 | | |
| 57901 | | > hide #!16 models |
| 57902 | | |
| 57903 | | > hide #!1 models |
| 57904 | | |
| 57905 | | > show #!1 models |
| 57906 | | |
| 57907 | | > hide #!1 models |
| 57908 | | |
| 57909 | | > show #!1 models |
| 57910 | | |
| 57911 | | > show #!2 models |
| 57912 | | |
| 57913 | | > hide #!2 models |
| 57914 | | |
| 57915 | | > show #!3 models |
| 57916 | | |
| 57917 | | > hide #!3 models |
| 57918 | | |
| 57919 | | > show #!4 models |
| 57920 | | |
| 57921 | | > hide #!4 models |
| 57922 | | |
| 57923 | | > show #!4 models |
| 57924 | | |
| 57925 | | > hide #!4 models |
| 57926 | | |
| 57927 | | > show #!16 models |
| 57928 | | |
| 57929 | | > hide #!16 models |
| 57930 | | |
| 57931 | | > show #!16 models |
| 57932 | | |
| 57933 | | > hide #!16 models |
| 57934 | | |
| 57935 | | > hide #!1 models |
| 57936 | | |
| 57937 | | > show #!16 models |
| 57938 | | |
| 57939 | | > show #!1 models |
| 57940 | | |
| 57941 | | > show #!13 models |
| 57942 | | |
| 57943 | | > hide #!13 models |
| 57944 | | |
| 57945 | | > show #!18 models |
| 57946 | | |
| 57947 | | > hide #!18 models |
| 57948 | | |
| 57949 | | > hide #!16 models |
| 57950 | | |
| 57951 | | > show #!16 models |
| 57952 | | |
| 57953 | | > hide #!1 models |
| 57954 | | |
| 57955 | | > hide #!16 models |
| 57956 | | |
| 57957 | | > show #!1 models |
| 57958 | | |
| 57959 | | > show #!13 models |
| 57960 | | |
| 57961 | | > hide #!13 models |
| 57962 | | |
| 57963 | | > show #!13 models |
| 57964 | | |
| 57965 | | > show #!7 models |
| 57966 | | |
| 57967 | | > hide #!1 models |
| 57968 | | |
| 57969 | | > hide #!7 models |
| 57970 | | |
| 57971 | | > hide #!13 models |
| 57972 | | |
| 57973 | | > show #!13 models |
| 57974 | | |
| 57975 | | > hide #!13 models |
| 57976 | | |
| 57977 | | > show #!1 models |
| 57978 | | |
| 57979 | | > hide #!1 models |
| 57980 | | |
| 57981 | | > show #!17 models |
| 57982 | | |
| 57983 | | > show #!14 models |
| 57984 | | |
| 57985 | | > show #!7 models |
| 57986 | | |
| 57987 | | > show #!3 models |
| 57988 | | |
| 57989 | | > show #5 models |
| 57990 | | |
| 57991 | | > show #6 models |
| 57992 | | |
| 57993 | | > show #8 models |
| 57994 | | |
| 57995 | | > show #!1 models |
| 57996 | | |
| 57997 | | > hide #!1 models |
| 57998 | | |
| 57999 | | > hide #8 models |
| 58000 | | |
| 58001 | | > show #8 models |
| 58002 | | |
| 58003 | | > show #11 models |
| 58004 | | |
| 58005 | | > show #10 models |
| 58006 | | |
| 58007 | | > show #!9 models |
| 58008 | | |
| 58009 | | > show #!18 models |
| 58010 | | |
| 58011 | | > show #!19 models |
| 58012 | | |
| 58013 | | > show #!13 models |
| 58014 | | |
| 58015 | | > show #!20 models |
| 58016 | | |
| 58017 | | > show #!21 models |
| 58018 | | |
| 58019 | | > show #22 models |
| 58020 | | |
| 58021 | | > show #23 models |
| 58022 | | |
| 58023 | | > hide #!21 models |
| 58024 | | |
| 58025 | | > hide #!20 models |
| 58026 | | |
| 58027 | | > hide #!19 models |
| 58028 | | |
| 58029 | | > hide #!18 models |
| 58030 | | |
| 58031 | | > hide #!17 models |
| 58032 | | |
| 58033 | | > hide #22 models |
| 58034 | | |
| 58035 | | > hide #23 models |
| 58036 | | |
| 58037 | | > hide #!14 models |
| 58038 | | |
| 58039 | | > hide #!13 models |
| 58040 | | |
| 58041 | | > hide #11 models |
| 58042 | | |
| 58043 | | > hide #10 models |
| 58044 | | |
| 58045 | | > hide #!9 models |
| 58046 | | |
| 58047 | | > hide #8 models |
| 58048 | | |
| 58049 | | > hide #!7 models |
| 58050 | | |
| 58051 | | > hide #6 models |
| 58052 | | |
| 58053 | | > hide #5 models |
| 58054 | | |
| 58055 | | > hide #!3 models |
| 58056 | | |
| 58057 | | > select #25/D |
| 58058 | | |
| 58059 | | 4014 atoms, 4083 bonds, 511 residues, 1 model selected |
| 58060 | | |
| 58061 | | > cartoon sel |
| 58062 | | |
| 58063 | | > select add #25 |
| 58064 | | |
| 58065 | | 39611 atoms, 40368 bonds, 5006 residues, 1 model selected |
| 58066 | | |
| 58067 | | > select subtract #25 |
| 58068 | | |
| 58069 | | Nothing selected |
| 58070 | | |
| 58071 | | > show #8 models |
| 58072 | | |
| 58073 | | > hide #8 models |
| 58074 | | |
| 58075 | | > show #8 models |
| 58076 | | |
| 58077 | | > hide #8 models |
| 58078 | | |
| 58079 | | > show #8 models |
| 58080 | | |
| 58081 | | > hide #8 models |
| 58082 | | |
| 58083 | | > show #!1 models |
| 58084 | | |
| 58085 | | > volume #1 level 0.005446 |
| 58086 | | |
| 58087 | | > volume #1 level 0.004645 |
| 58088 | | |
| 58089 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 58090 | | > dataset/Structure files/alphafold 3 /GT 20240604 |
| 58091 | | > /fold_2024_06_04_12_31/20240710_leaf_fitting_alphafold_only_withAF3_v2.cxs" |
| 58092 | | |
| 58093 | | ——— End of log from Wed Jul 10 17:31:38 2024 ——— |
| 58094 | | |
| 58095 | | opened ChimeraX session |
| 58096 | | |
| 58097 | | > split #25 chains |
| 58098 | | |
| 58099 | | Split fold_2024_06_04_12_31_model_0.cif (#25) into 8 models |
| 58100 | | Chain information for fold_2024_06_04_12_31_model_0.cif A #25.1 |
| 58101 | | --- |
| 58102 | | Chain | Description |
| 58103 | | A | No description available |
| 58104 | | |
| 58105 | | Chain information for fold_2024_06_04_12_31_model_0.cif B #25.2 |
| 58106 | | --- |
| 58107 | | Chain | Description |
| 58108 | | B | No description available |
| 58109 | | |
| 58110 | | Chain information for fold_2024_06_04_12_31_model_0.cif C #25.3 |
| 58111 | | --- |
| 58112 | | Chain | Description |
| 58113 | | C | No description available |
| 58114 | | |
| 58115 | | Chain information for fold_2024_06_04_12_31_model_0.cif D #25.4 |
| 58116 | | --- |
| 58117 | | Chain | Description |
| 58118 | | D | No description available |
| 58119 | | |
| 58120 | | Chain information for fold_2024_06_04_12_31_model_0.cif E #25.5 |
| 58121 | | --- |
| 58122 | | Chain | Description |
| 58123 | | E | No description available |
| 58124 | | |
| 58125 | | Chain information for fold_2024_06_04_12_31_model_0.cif F #25.6 |
| 58126 | | --- |
| 58127 | | Chain | Description |
| 58128 | | F | No description available |
| 58129 | | |
| 58130 | | Chain information for fold_2024_06_04_12_31_model_0.cif G #25.7 |
| 58131 | | --- |
| 58132 | | Chain | Description |
| 58133 | | G | No description available |
| 58134 | | |
| 58135 | | Chain information for fold_2024_06_04_12_31_model_0.cif H #25.8 |
| 58136 | | --- |
| 58137 | | Chain | Description |
| 58138 | | H | No description available |
| 58139 | | |
| 58140 | | |
| 58141 | | > hide #!1 models |
| 58142 | | |
| 58143 | | > hide #!15 models |
| 58144 | | |
| 58145 | | > hide #25.1 models |
| 58146 | | |
| 58147 | | > show #25.1 models |
| 58148 | | |
| 58149 | | > hide #25.1 models |
| 58150 | | |
| 58151 | | > show #25.1 models |
| 58152 | | |
| 58153 | | > select add #25.1 |
| 58154 | | |
| 58155 | | 9742 atoms, 9961 bonds, 1224 residues, 1 model selected |
| 58156 | | |
| 58157 | | > cartoon sel |
| 58158 | | |
| 58159 | | > select subtract #25.1 |
| 58160 | | |
| 58161 | | Nothing selected |
| 58162 | | |
| 58163 | | > select add #25.2 |
| 58164 | | |
| 58165 | | 7501 atoms, 7619 bonds, 953 residues, 1 model selected |
| 58166 | | |
| 58167 | | > select subtract #25.2 |
| 58168 | | |
| 58169 | | Nothing selected |
| 58170 | | |
| 58171 | | > select add #25.3 |
| 58172 | | |
| 58173 | | 7214 atoms, 7373 bonds, 905 residues, 1 model selected |
| 58174 | | |
| 58175 | | > cartoon sel |
| 58176 | | |
| 58177 | | > select subtract #25.3 |
| 58178 | | |
| 58179 | | Nothing selected |
| 58180 | | |
| 58181 | | > select add #25.4 |
| 58182 | | |
| 58183 | | 4014 atoms, 4083 bonds, 511 residues, 1 model selected |
| 58184 | | |
| 58185 | | > select subtract #25.4 |
| 58186 | | |
| 58187 | | Nothing selected |
| 58188 | | |
| 58189 | | > select add #25.5 |
| 58190 | | |
| 58191 | | 6830 atoms, 6947 bonds, 874 residues, 1 model selected |
| 58192 | | |
| 58193 | | > cartoon sel |
| 58194 | | |
| 58195 | | > select subtract #25.5 |
| 58196 | | |
| 58197 | | Nothing selected |
| 58198 | | |
| 58199 | | > select add #25.6 |
| 58200 | | |
| 58201 | | 1420 atoms, 1441 bonds, 177 residues, 1 model selected |
| 58202 | | |
| 58203 | | > cartoon sel |
| 58204 | | |
| 58205 | | > select subtract #25.6 |
| 58206 | | |
| 58207 | | Nothing selected |
| 58208 | | |
| 58209 | | > select add #25.7 |
| 58210 | | |
| 58211 | | 1445 atoms, 1472 bonds, 181 residues, 1 model selected |
| 58212 | | |
| 58213 | | > cartoon sel |
| 58214 | | |
| 58215 | | > select subtract #25.7 |
| 58216 | | |
| 58217 | | Nothing selected |
| 58218 | | |
| 58219 | | > select add #25.8 |
| 58220 | | |
| 58221 | | 1445 atoms, 1472 bonds, 181 residues, 1 model selected |
| 58222 | | |
| 58223 | | > cartoon sel |
| 58224 | | |
| 58225 | | > select subtract #25.8 |
| 58226 | | |
| 58227 | | Nothing selected |
| 58228 | | |
| 58229 | | > hide #25.8 models |
| 58230 | | |
| 58231 | | > show #25.8 models |
| 58232 | | |
| 58233 | | > select add #26 |
| 58234 | | |
| 58235 | | 4503 atoms, 4577 bonds, 5 pseudobonds, 565 residues, 6 models selected |
| 58236 | | |
| 58237 | | > cartoon #25#!26-27,32 |
| 58238 | | |
| 58239 | | > select subtract #26 |
| 58240 | | |
| 58241 | | Nothing selected |
| 58242 | | |
| 58243 | | > hide #!26 models |
| 58244 | | |
| 58245 | | > show #!26 models |
| 58246 | | |
| 58247 | | > show #!26.1 models |
| 58248 | | |
| 58249 | | > hide #!26.1 models |
| 58250 | | |
| 58251 | | > show #!1 models |
| 58252 | | |
| 58253 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 58254 | | QTBUG which explains how to reproduce. |
| 58255 | | |
| 58256 | | > rename #25 2024_06_04_12_31_AF3_model_0.cif |
| 58257 | | |
| 58258 | | > rename #25.1 "2024_06_04_12_31_model_0_CopA.cif A" |
| 58259 | | |
| 58260 | | > rename #25.2 "2024_06_04_12_31_model_0_CopB.cif B" |
| 58261 | | |
| 58262 | | > rename #25.3 "2024_06_04_12_31_model_0_CopBprime.cif C" |
| 58263 | | |
| 58264 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 58265 | | > dataset/Structure files/alphafold 3 /GT 20240604 |
| 58266 | | > /fold_2024_06_04_12_31/20240710_leaf_fitting_alphafold_only_withAF3_v3.cxs" |
| 58267 | | |
| 58268 | | > show #!16 models |
| 58269 | | |
| 58270 | | > hide #!16 models |
| 58271 | | |
| 58272 | | > ui tool show "Fit in Map" |
| 58273 | | |
| 58274 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 58275 | | QTBUG which explains how to reproduce. |
| 58276 | | |
| 58277 | | > fitmap #25.2 inMap #1 |
| 58278 | | |
| 58279 | | Fit molecule 2024_06_04_12_31_model_0_CopB.cif B (#25.2) to map |
| 58280 | | relion_locres_filtered_20240326_GT.mrc (#1) using 7501 atoms |
| 58281 | | average map value = 0.008543, steps = 92 |
| 58282 | | shifted from previous position = 4.83 |
| 58283 | | rotated from previous position = 8.42 degrees |
| 58284 | | atoms outside contour = 3060, contour level = 0.0046452 |
| 58285 | | |
| 58286 | | Position of 2024_06_04_12_31_model_0_CopB.cif B (#25.2) relative to |
| 58287 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 58288 | | Matrix rotation and translation |
| 58289 | | 0.81836991 -0.03043632 0.57388528 219.84667924 |
| 58290 | | 0.54622648 0.35157960 -0.76028180 252.72686731 |
| 58291 | | -0.17862618 0.93566309 0.30434729 262.25133331 |
| 58292 | | Axis 0.87287250 0.38730419 0.29679803 |
| 58293 | | Axis point 0.00000000 -34.12525913 174.24483479 |
| 58294 | | Rotation angle (degrees) 76.28170258 |
| 58295 | | Shift along axis 367.61597236 |
| 58296 | | |
| 58297 | | |
| 58298 | | > show #!16 models |
| 58299 | | |
| 58300 | | > hide #!1 models |
| 58301 | | |
| 58302 | | > hide #!16 models |
| 58303 | | |
| 58304 | | > show #!1 models |
| 58305 | | |
| 58306 | | > fitmap #25.3 inMap #1 |
| 58307 | | |
| 58308 | | Fit molecule 2024_06_04_12_31_model_0_CopBprime.cif C (#25.3) to map |
| 58309 | | relion_locres_filtered_20240326_GT.mrc (#1) using 7214 atoms |
| 58310 | | average map value = 0.008369, steps = 160 |
| 58311 | | shifted from previous position = 6.47 |
| 58312 | | rotated from previous position = 12.7 degrees |
| 58313 | | atoms outside contour = 2796, contour level = 0.0046452 |
| 58314 | | |
| 58315 | | Position of 2024_06_04_12_31_model_0_CopBprime.cif C (#25.3) relative to |
| 58316 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 58317 | | Matrix rotation and translation |
| 58318 | | 0.84345587 0.00482068 0.53717683 223.29518155 |
| 58319 | | 0.47339236 0.46600929 -0.74748579 248.12832786 |
| 58320 | | -0.25393278 0.88476670 0.39077620 257.93229712 |
| 58321 | | Axis 0.87127387 0.42228340 0.25011710 |
| 58322 | | Axis point 0.00000000 -68.12363713 175.06688149 |
| 58323 | | Rotation angle (degrees) 69.50530340 |
| 58324 | | Shift along axis 363.84501176 |
| 58325 | | |
| 58326 | | |
| 58327 | | > fitmap #25.4 inMap #1 |
| 58328 | | |
| 58329 | | Fit molecule fold_2024_06_04_12_31_model_0.cif D (#25.4) to map |
| 58330 | | relion_locres_filtered_20240326_GT.mrc (#1) using 4014 atoms |
| 58331 | | average map value = 0.004982, steps = 256 |
| 58332 | | shifted from previous position = 4.02 |
| 58333 | | rotated from previous position = 10.1 degrees |
| 58334 | | atoms outside contour = 2765, contour level = 0.0046452 |
| 58335 | | |
| 58336 | | Position of fold_2024_06_04_12_31_model_0.cif D (#25.4) relative to |
| 58337 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 58338 | | Matrix rotation and translation |
| 58339 | | 0.80534835 0.02456211 0.59229278 219.83833435 |
| 58340 | | 0.54486002 0.36295360 -0.75590492 251.11971251 |
| 58341 | | -0.23354142 0.93148343 0.27892117 259.71968287 |
| 58342 | | Axis 0.86561293 0.42364448 0.26690750 |
| 58343 | | Axis point 0.00000000 -45.73336002 165.62858715 |
| 58344 | | Rotation angle (degrees) 77.07875382 |
| 58345 | | Shift along axis 366.00151472 |
| 58346 | | |
| 58347 | | |
| 58348 | | > hide #25.8 models |
| 58349 | | |
| 58350 | | > show #25.8 models |
| 58351 | | |
| 58352 | | > hide #25.7 models |
| 58353 | | |
| 58354 | | > show #25.7 models |
| 58355 | | |
| 58356 | | > hide #25.7 models |
| 58357 | | |
| 58358 | | > show #25.7 models |
| 58359 | | |
| 58360 | | > fitmap #25.7 inMap #1 |
| 58361 | | |
| 58362 | | Fit molecule fold_2024_06_04_12_31_model_0.cif G (#25.7) to map |
| 58363 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1445 atoms |
| 58364 | | average map value = 0.007837, steps = 72 |
| 58365 | | shifted from previous position = 6.15 |
| 58366 | | rotated from previous position = 14.8 degrees |
| 58367 | | atoms outside contour = 505, contour level = 0.0046452 |
| 58368 | | |
| 58369 | | Position of fold_2024_06_04_12_31_model_0.cif G (#25.7) relative to |
| 58370 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 58371 | | Matrix rotation and translation |
| 58372 | | 0.83207671 0.08557782 0.54801896 221.29669356 |
| 58373 | | 0.47205720 0.40949785 -0.78068784 251.64545733 |
| 58374 | | -0.29122215 0.90828847 0.30033600 256.11679191 |
| 58375 | | Axis 0.87730649 0.43592777 0.20074934 |
| 58376 | | Axis point 0.00000000 -68.21876802 175.56477609 |
| 58377 | | Rotation angle (degrees) 74.27888041 |
| 58378 | | Shift along axis 355.25954487 |
| 58379 | | |
| 58380 | | |
| 58381 | | > hide #25.3 models |
| 58382 | | |
| 58383 | | > show #!3 models |
| 58384 | | |
| 58385 | | > show #!7 models |
| 58386 | | |
| 58387 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 58388 | | > dataset/Structure files/alphafold 3 /GT 20240604 |
| 58389 | | > /fold_2024_06_04_12_31/20240710_leaf_fitting_alphafold_only_withAF3_v4.cxs" |
| 58390 | | |
| 58391 | | ——— End of log from Wed Jul 10 18:08:13 2024 ——— |
| 58392 | | |
| 58393 | | opened ChimeraX session |
| 58394 | | |
| 58395 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 58396 | | > dataset/Structure files/alphafold 3 /GT 20240604 /fold_2024_06_04_12_31 |
| 58397 | | > (1)/fold_2024_06_04_12_31_summary_confidences_0.json" |
| 58398 | | |
| 58399 | | Failed opening file /Users/becca/Desktop/Postdoc/COPI notebooks and |
| 58400 | | resources/COPI-Golph3 dataset/Structure files/alphafold 3 /GT 20240604 |
| 58401 | | /fold_2024_06_04_12_31 (1)/fold_2024_06_04_12_31_summary_confidences_0.json: |
| 58402 | | expected str, bytes or os.PathLike object, not NoneType |
| 58403 | | |
| 58404 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 58405 | | > dataset/Structure files/alphafold 3 /GT 20240604 /fold_2024_06_04_12_31 |
| 58406 | | > (1)/fold_2024_06_04_12_31_summary_confidences_0.json" |
| 58407 | | |
| 58408 | | Failed opening file /Users/becca/Desktop/Postdoc/COPI notebooks and |
| 58409 | | resources/COPI-Golph3 dataset/Structure files/alphafold 3 /GT 20240604 |
| 58410 | | /fold_2024_06_04_12_31 (1)/fold_2024_06_04_12_31_summary_confidences_0.json: |
| 58411 | | expected str, bytes or os.PathLike object, not NoneType |
| 58412 | | |
| 58413 | | > ui tool show "Fit in Map" |
| 58414 | | |
| 58415 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 58416 | | QTBUG which explains how to reproduce. |
| 58417 | | |
| 58418 | | > fitmap #25.1 inMap #1 |
| 58419 | | |
| 58420 | | Fit molecule 2024_06_04_12_31_model_0_CopA.cif A (#25.1) to map |
| 58421 | | relion_locres_filtered_20240326_GT.mrc (#1) using 9742 atoms |
| 58422 | | average map value = 0.005669, steps = 116 |
| 58423 | | shifted from previous position = 9.72 |
| 58424 | | rotated from previous position = 11.3 degrees |
| 58425 | | atoms outside contour = 5635, contour level = 0.0046452 |
| 58426 | | |
| 58427 | | Position of 2024_06_04_12_31_model_0_CopA.cif A (#25.1) relative to |
| 58428 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 58429 | | Matrix rotation and translation |
| 58430 | | 0.75553140 0.04537000 0.65353950 219.16243552 |
| 58431 | | 0.61538755 0.29295285 -0.73176279 259.39055669 |
| 58432 | | -0.22465634 0.95504984 0.19341494 257.39821799 |
| 58433 | | Axis 0.84964385 0.44234533 0.28711660 |
| 58434 | | Axis point -0.00000000 -26.88413277 153.85341339 |
| 58435 | | Rotation angle (degrees) 83.05309036 |
| 58436 | | Shift along axis 374.85351736 |
| 58437 | | |
| 58438 | | |
| 58439 | | > show #25.3 models |
| 58440 | | |
| 58441 | | > fitmap #25.3 inMap #1 |
| 58442 | | |
| 58443 | | Fit molecule 2024_06_04_12_31_model_0_CopBprime.cif C (#25.3) to map |
| 58444 | | relion_locres_filtered_20240326_GT.mrc (#1) using 7214 atoms |
| 58445 | | average map value = 0.008368, steps = 48 |
| 58446 | | shifted from previous position = 0.0306 |
| 58447 | | rotated from previous position = 0.0358 degrees |
| 58448 | | atoms outside contour = 2792, contour level = 0.0046452 |
| 58449 | | |
| 58450 | | Position of 2024_06_04_12_31_model_0_CopBprime.cif C (#25.3) relative to |
| 58451 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 58452 | | Matrix rotation and translation |
| 58453 | | 0.84321152 0.00513755 0.53755738 223.25372064 |
| 58454 | | 0.47367936 0.46575275 -0.74746387 248.14694008 |
| 58455 | | -0.25420896 0.88489998 0.39029453 257.93051862 |
| 58456 | | Axis 0.87116267 0.42255119 0.25005218 |
| 58457 | | Axis point 0.00000000 -68.10469645 174.97857555 |
| 58458 | | Rotation angle (degrees) 69.53535083 |
| 58459 | | Shift along axis 363.84118025 |
| 58460 | | |
| 58461 | | |
| 58462 | | > fitmap #25.5 inMap #1 |
| 58463 | | |
| 58464 | | Fit molecule fold_2024_06_04_12_31_model_0.cif E (#25.5) to map |
| 58465 | | relion_locres_filtered_20240326_GT.mrc (#1) using 6830 atoms |
| 58466 | | average map value = 0.00533, steps = 144 |
| 58467 | | shifted from previous position = 18.8 |
| 58468 | | rotated from previous position = 32.2 degrees |
| 58469 | | atoms outside contour = 3946, contour level = 0.0046452 |
| 58470 | | |
| 58471 | | Position of fold_2024_06_04_12_31_model_0.cif E (#25.5) relative to |
| 58472 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 58473 | | Matrix rotation and translation |
| 58474 | | 0.92680175 -0.00991127 0.37542014 203.02780080 |
| 58475 | | 0.37483013 -0.03749334 -0.92633505 259.56425147 |
| 58476 | | 0.02325691 0.99924773 -0.03103385 251.03464453 |
| 58477 | | Axis 0.96521787 0.17652538 0.19285553 |
| 58478 | | Axis point 0.00000000 17.09180671 205.76151029 |
| 58479 | | Rotation angle (degrees) 94.06354038 |
| 58480 | | Shift along axis 290.19915859 |
| 58481 | | |
| 58482 | | |
| 58483 | | > fitmap #25.6 inMap #1 |
| 58484 | | |
| 58485 | | Fit molecule fold_2024_06_04_12_31_model_0.cif F (#25.6) to map |
| 58486 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1420 atoms |
| 58487 | | average map value = 0.006566, steps = 156 |
| 58488 | | shifted from previous position = 14.5 |
| 58489 | | rotated from previous position = 50.9 degrees |
| 58490 | | atoms outside contour = 670, contour level = 0.0046452 |
| 58491 | | |
| 58492 | | Position of fold_2024_06_04_12_31_model_0.cif F (#25.6) relative to |
| 58493 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 58494 | | Matrix rotation and translation |
| 58495 | | 0.91730136 0.38762874 0.09111629 227.23819734 |
| 58496 | | -0.16863333 0.58545743 -0.79297062 293.42586081 |
| 58497 | | -0.36072292 0.71202778 0.60240802 274.50516754 |
| 58498 | | Axis 0.90286439 0.27106310 -0.33370748 |
| 58499 | | Axis point 0.00000000 -237.05848562 427.95408374 |
| 58500 | | Rotation angle (degrees) 56.45557375 |
| 58501 | | Shift along axis 193.09777338 |
| 58502 | | |
| 58503 | | |
| 58504 | | > volume #1 level 0.007361 |
| 58505 | | |
| 58506 | | > select add #25.8 |
| 58507 | | |
| 58508 | | 1445 atoms, 1472 bonds, 181 residues, 1 model selected |
| 58509 | | |
| 58510 | | > ui mousemode right "translate selected models" |
| 58511 | | |
| 58512 | | > view matrix models |
| 58513 | | > #25.8,0.74055,-0.13166,0.65898,273.87,0.65555,0.35719,-0.66533,308.82,-0.14779,0.92471,0.35082,357.56 |
| 58514 | | |
| 58515 | | > view matrix models |
| 58516 | | > #25.8,0.74055,-0.13166,0.65898,290.35,0.65555,0.35719,-0.66533,310.7,-0.14779,0.92471,0.35082,354.71 |
| 58517 | | |
| 58518 | | > fitmap #25.6 inMap #1 |
| 58519 | | |
| 58520 | | Fit molecule fold_2024_06_04_12_31_model_0.cif F (#25.6) to map |
| 58521 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1420 atoms |
| 58522 | | average map value = 0.006567, steps = 28 |
| 58523 | | shifted from previous position = 0.0442 |
| 58524 | | rotated from previous position = 0.0449 degrees |
| 58525 | | atoms outside contour = 875, contour level = 0.0073613 |
| 58526 | | |
| 58527 | | Position of fold_2024_06_04_12_31_model_0.cif F (#25.6) relative to |
| 58528 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 58529 | | Matrix rotation and translation |
| 58530 | | 0.91700642 0.38823271 0.09151274 227.23927269 |
| 58531 | | -0.16874008 0.58547245 -0.79293682 293.39526347 |
| 58532 | | -0.36142220 0.71168629 0.60239241 274.54257906 |
| 58533 | | Axis 0.90253319 0.27168852 -0.33409458 |
| 58534 | | Axis point 0.00000000 -237.32869351 427.92431869 |
| 58535 | | Rotation angle (degrees) 56.46573103 |
| 58536 | | Shift along axis 193.07992175 |
| 58537 | | |
| 58538 | | |
| 58539 | | > fitmap #25.8 inMap #1 |
| 58540 | | |
| 58541 | | Fit molecule fold_2024_06_04_12_31_model_0.cif H (#25.8) to map |
| 58542 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1445 atoms |
| 58543 | | average map value = 0.008109, steps = 468 |
| 58544 | | shifted from previous position = 13.3 |
| 58545 | | rotated from previous position = 60.9 degrees |
| 58546 | | atoms outside contour = 833, contour level = 0.0073613 |
| 58547 | | |
| 58548 | | Position of fold_2024_06_04_12_31_model_0.cif H (#25.8) relative to |
| 58549 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 58550 | | Matrix rotation and translation |
| 58551 | | 0.12575643 -0.88575141 0.44679946 228.82969252 |
| 58552 | | 0.99073145 0.08881934 -0.10277317 179.18096389 |
| 58553 | | 0.05134705 0.45558267 0.88871138 240.16932217 |
| 58554 | | Axis 0.27955096 0.19799041 0.93949511 |
| 58555 | | Axis point 14.33554481 141.59673741 0.00000000 |
| 58556 | | Rotation angle (degrees) 87.03972432 |
| 58557 | | Shift along axis 325.08357550 |
| 58558 | | |
| 58559 | | |
| 58560 | | > view matrix models |
| 58561 | | > #25.8,0.11366,-0.88418,0.45312,290.07,0.99167,0.073124,-0.10606,260.62,0.060642,0.4614,0.88512,318.11 |
| 58562 | | |
| 58563 | | > view matrix models |
| 58564 | | > #25.8,0.11366,-0.88418,0.45312,294.87,0.99167,0.073124,-0.10606,262.05,0.060642,0.4614,0.88512,317.92 |
| 58565 | | |
| 58566 | | > ui mousemode right "rotate selected models" |
| 58567 | | |
| 58568 | | > view matrix models |
| 58569 | | > #25.8,-0.66494,-0.24529,-0.70547,392.21,-0.019471,-0.93852,0.34468,260.9,-0.74664,0.24292,0.61928,357.82 |
| 58570 | | |
| 58571 | | > ui mousemode right "translate selected models" |
| 58572 | | |
| 58573 | | > view matrix models |
| 58574 | | > #25.8,-0.66494,-0.24529,-0.70547,406.09,-0.019471,-0.93852,0.34468,256.15,-0.74664,0.24292,0.61928,359.03 |
| 58575 | | |
| 58576 | | > fitmap #25.8 inMap #1 |
| 58577 | | |
| 58578 | | Fit molecule fold_2024_06_04_12_31_model_0.cif H (#25.8) to map |
| 58579 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1445 atoms |
| 58580 | | average map value = 0.01011, steps = 148 |
| 58581 | | shifted from previous position = 4.47 |
| 58582 | | rotated from previous position = 45.9 degrees |
| 58583 | | atoms outside contour = 599, contour level = 0.0073613 |
| 58584 | | |
| 58585 | | Position of fold_2024_06_04_12_31_model_0.cif H (#25.8) relative to |
| 58586 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 58587 | | Matrix rotation and translation |
| 58588 | | -0.98716163 -0.15525535 -0.03751933 340.31636141 |
| 58589 | | 0.09860749 -0.77717312 0.62151308 169.78952644 |
| 58590 | | -0.12565225 0.60983417 0.78250483 262.93874124 |
| 58591 | | Axis -0.04341926 0.32765622 0.94379880 |
| 58592 | | Axis point 173.51910029 51.88093325 0.00000000 |
| 58593 | | Rotation angle (degrees) 172.27087505 |
| 58594 | | Shift along axis 289.01757907 |
| 58595 | | |
| 58596 | | |
| 58597 | | > select subtract #25.8 |
| 58598 | | |
| 58599 | | Nothing selected |
| 58600 | | |
| 58601 | | > fitmap #25.7 inMap #1 |
| 58602 | | |
| 58603 | | Fit molecule fold_2024_06_04_12_31_model_0.cif G (#25.7) to map |
| 58604 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1445 atoms |
| 58605 | | average map value = 0.007837, steps = 60 |
| 58606 | | shifted from previous position = 0.0106 |
| 58607 | | rotated from previous position = 0.0255 degrees |
| 58608 | | atoms outside contour = 805, contour level = 0.0073613 |
| 58609 | | |
| 58610 | | Position of fold_2024_06_04_12_31_model_0.cif G (#25.7) relative to |
| 58611 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 58612 | | Matrix rotation and translation |
| 58613 | | 0.83215962 0.08563418 0.54788425 221.30652905 |
| 58614 | | 0.47179779 0.40985808 -0.78065563 251.64999561 |
| 58615 | | -0.29140559 0.90812067 0.30066533 256.11008960 |
| 58616 | | Axis 0.87730176 0.43600237 0.20060799 |
| 58617 | | Axis point 0.00000000 -68.32153315 175.59524077 |
| 58618 | | Rotation angle (degrees) 74.25588981 |
| 58619 | | Shift along axis 355.25032939 |
| 58620 | | |
| 58621 | | |
| 58622 | | > fitmap #25.7 inMap #1 |
| 58623 | | |
| 58624 | | Fit molecule fold_2024_06_04_12_31_model_0.cif G (#25.7) to map |
| 58625 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1445 atoms |
| 58626 | | average map value = 0.007837, steps = 48 |
| 58627 | | shifted from previous position = 0.026 |
| 58628 | | rotated from previous position = 0.0382 degrees |
| 58629 | | atoms outside contour = 804, contour level = 0.0073613 |
| 58630 | | |
| 58631 | | Position of fold_2024_06_04_12_31_model_0.cif G (#25.7) relative to |
| 58632 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 58633 | | Matrix rotation and translation |
| 58634 | | 0.83221936 0.08509556 0.54787744 221.30074730 |
| 58635 | | 0.47184021 0.41022785 -0.78043573 251.66017447 |
| 58636 | | -0.29116620 0.90800433 0.30124805 256.12289313 |
| 58637 | | Axis 0.87725727 0.43593915 0.20093965 |
| 58638 | | Axis point 0.00000000 -68.30458057 175.60720654 |
| 58639 | | Rotation angle (degrees) 74.22575907 |
| 58640 | | Shift along axis 355.31145663 |
| 58641 | | |
| 58642 | | |
| 58643 | | > select add #25.5 |
| 58644 | | |
| 58645 | | 6830 atoms, 6947 bonds, 874 residues, 1 model selected |
| 58646 | | |
| 58647 | | > select add #25 |
| 58648 | | |
| 58649 | | 39611 atoms, 40368 bonds, 5006 residues, 9 models selected |
| 58650 | | |
| 58651 | | > select subtract #25 |
| 58652 | | |
| 58653 | | Nothing selected |
| 58654 | | |
| 58655 | | > ui tool show Matchmaker |
| 58656 | | |
| 58657 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 58658 | | QTBUG which explains how to reproduce. |
| 58659 | | |
| 58660 | | > matchmaker #25.5 to #9 |
| 58661 | | |
| 58662 | | Parameters |
| 58663 | | --- |
| 58664 | | Chain pairing | bb |
| 58665 | | Alignment algorithm | Needleman-Wunsch |
| 58666 | | Similarity matrix | BLOSUM-62 |
| 58667 | | SS fraction | 0.3 |
| 58668 | | Gap open (HH/SS/other) | 18/18/6 |
| 58669 | | Gap extend | 1 |
| 58670 | | SS matrix | | | H | S | O |
| 58671 | | ---|---|---|--- |
| 58672 | | H | 6 | -9 | -6 |
| 58673 | | S | | 6 | -6 |
| 58674 | | O | | | 4 |
| 58675 | | Iteration cutoff | 2 |
| 58676 | | |
| 58677 | | Matchmaker CopG_Q9QZE5_L311-T583, chain A (#9) with |
| 58678 | | fold_2024_06_04_12_31_model_0.cif E, chain E (#25.5), sequence alignment score |
| 58679 | | = 3514.8 |
| 58680 | | RMSD between 175 pruned atom pairs is 0.803 angstroms; (across all 277 pairs: |
| 58681 | | 3.261) |
| 58682 | | |
| 58683 | | |
| 58684 | | > ui tool show Matchmaker |
| 58685 | | |
| 58686 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 58687 | | QTBUG which explains how to reproduce. |
| 58688 | | |
| 58689 | | > matchmaker #25.6 to #10 |
| 58690 | | |
| 58691 | | Parameters |
| 58692 | | --- |
| 58693 | | Chain pairing | bb |
| 58694 | | Alignment algorithm | Needleman-Wunsch |
| 58695 | | Similarity matrix | BLOSUM-62 |
| 58696 | | SS fraction | 0.3 |
| 58697 | | Gap open (HH/SS/other) | 18/18/6 |
| 58698 | | Gap extend | 1 |
| 58699 | | SS matrix | | | H | S | O |
| 58700 | | ---|---|---|--- |
| 58701 | | H | 6 | -9 | -6 |
| 58702 | | S | | 6 | -6 |
| 58703 | | O | | | 4 |
| 58704 | | Iteration cutoff | 2 |
| 58705 | | |
| 58706 | | Matchmaker CopZ1_P61924_M1-V153.pdb, chain A (#10) with |
| 58707 | | fold_2024_06_04_12_31_model_0.cif F, chain F (#25.6), sequence alignment score |
| 58708 | | = 834 |
| 58709 | | RMSD between 140 pruned atom pairs is 0.442 angstroms; (across all 153 pairs: |
| 58710 | | 2.101) |
| 58711 | | |
| 58712 | | |
| 58713 | | > hide #25.8 models |
| 58714 | | |
| 58715 | | > hide #25.7 models |
| 58716 | | |
| 58717 | | > hide #25.6 models |
| 58718 | | |
| 58719 | | > hide #25.5 models |
| 58720 | | |
| 58721 | | > hide #25.4 models |
| 58722 | | |
| 58723 | | > hide #25.3 models |
| 58724 | | |
| 58725 | | > hide #25.2 models |
| 58726 | | |
| 58727 | | > hide #!7 models |
| 58728 | | |
| 58729 | | > hide #!3 models |
| 58730 | | |
| 58731 | | > hide #!1 models |
| 58732 | | |
| 58733 | | > hide #25.1 models |
| 58734 | | |
| 58735 | | > show #25.1 models |
| 58736 | | |
| 58737 | | > combine #25.1 |
| 58738 | | |
| 58739 | | > hide #33 models |
| 58740 | | |
| 58741 | | > show #!1 models |
| 58742 | | |
| 58743 | | > hide #!1 models |
| 58744 | | |
| 58745 | | > ui mousemode right select |
| 58746 | | |
| 58747 | | Drag select of 373 residues |
| 58748 | | |
| 58749 | | > select up |
| 58750 | | |
| 58751 | | 3070 atoms, 3133 bonds, 393 residues, 1 model selected |
| 58752 | | |
| 58753 | | > delete sel |
| 58754 | | |
| 58755 | | Drag select of 16 residues, 2 pseudobonds |
| 58756 | | |
| 58757 | | > select up |
| 58758 | | |
| 58759 | | 416 atoms, 427 bonds, 2 pseudobonds, 54 residues, 2 models selected |
| 58760 | | |
| 58761 | | > delete sel |
| 58762 | | |
| 58763 | | > show #!1 models |
| 58764 | | |
| 58765 | | > fitmap #25.1 inMap #1 |
| 58766 | | |
| 58767 | | Fit molecule 2024_06_04_12_31_model_0_CopA.cif A (#25.1) to map |
| 58768 | | relion_locres_filtered_20240326_GT.mrc (#1) using 6256 atoms |
| 58769 | | average map value = 0.008111, steps = 48 |
| 58770 | | shifted from previous position = 0.31 |
| 58771 | | rotated from previous position = 0.572 degrees |
| 58772 | | atoms outside contour = 3215, contour level = 0.0073613 |
| 58773 | | |
| 58774 | | Position of 2024_06_04_12_31_model_0_CopA.cif A (#25.1) relative to |
| 58775 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 58776 | | Matrix rotation and translation |
| 58777 | | 0.76006059 0.04278394 0.64844231 218.74194091 |
| 58778 | | 0.60950045 0.29920371 -0.73415689 259.35375027 |
| 58779 | | -0.22542647 0.95322960 0.20133612 257.86149366 |
| 58780 | | Axis 0.85094793 0.44069147 0.28579477 |
| 58781 | | Axis point -0.00000000 -28.07039157 155.48469352 |
| 58782 | | Rotation angle (degrees) 82.51305906 |
| 58783 | | Shift along axis 374.12845394 |
| 58784 | | |
| 58785 | | |
| 58786 | | > fitmap #25.1 inMap #1 |
| 58787 | | |
| 58788 | | Fit molecule 2024_06_04_12_31_model_0_CopA.cif A (#25.1) to map |
| 58789 | | relion_locres_filtered_20240326_GT.mrc (#1) using 6256 atoms |
| 58790 | | average map value = 0.008111, steps = 44 |
| 58791 | | shifted from previous position = 0.0292 |
| 58792 | | rotated from previous position = 0.00608 degrees |
| 58793 | | atoms outside contour = 3212, contour level = 0.0073613 |
| 58794 | | |
| 58795 | | Position of 2024_06_04_12_31_model_0_CopA.cif A (#25.1) relative to |
| 58796 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 58797 | | Matrix rotation and translation |
| 58798 | | 0.76009501 0.04286795 0.64839642 218.76025174 |
| 58799 | | 0.60943303 0.29922890 -0.73420259 259.36442844 |
| 58800 | | -0.22549271 0.95321792 0.20131725 257.87889146 |
| 58801 | | Axis 0.85096738 0.44070292 0.28571918 |
| 58802 | | Axis point 0.00000000 -28.09786587 155.50118606 |
| 58803 | | Rotation angle (degrees) 82.51188250 |
| 58804 | | Shift along axis 374.14144497 |
| 58805 | | |
| 58806 | | |
| 58807 | | > hide #!1 models |
| 58808 | | |
| 58809 | | > show #!1 models |
| 58810 | | |
| 58811 | | > hide #!1 models |
| 58812 | | |
| 58813 | | > close #33 |
| 58814 | | |
| 58815 | | > select clear |
| 58816 | | |
| 58817 | | Drag select of 153 residues |
| 58818 | | |
| 58819 | | > select up |
| 58820 | | |
| 58821 | | 1269 atoms, 1286 bonds, 160 residues, 1 model selected |
| 58822 | | |
| 58823 | | > select down |
| 58824 | | |
| 58825 | | 1219 atoms, 153 residues, 1 model selected |
| 58826 | | |
| 58827 | | > select up |
| 58828 | | |
| 58829 | | 1269 atoms, 1286 bonds, 160 residues, 1 model selected |
| 58830 | | |
| 58831 | | > select clear |
| 58832 | | |
| 58833 | | Drag select of 164 residues |
| 58834 | | |
| 58835 | | > select down |
| 58836 | | |
| 58837 | | 1309 atoms, 164 residues, 1 model selected |
| 58838 | | |
| 58839 | | > select clear |
| 58840 | | |
| 58841 | | Drag select of 57 residues |
| 58842 | | Drag select of 120 residues |
| 58843 | | |
| 58844 | | > select up |
| 58845 | | |
| 58846 | | 1073 atoms, 1086 bonds, 133 residues, 1 model selected |
| 58847 | | Drag select of 161 residues |
| 58848 | | Drag select of 157 residues |
| 58849 | | [Repeated 1 time(s)] |
| 58850 | | |
| 58851 | | > combine sel |
| 58852 | | |
| 58853 | | > hide #!33 models |
| 58854 | | |
| 58855 | | > delete sel |
| 58856 | | |
| 58857 | | > fitmap #25.1 inMap #1 |
| 58858 | | |
| 58859 | | Fit molecule 2024_06_04_12_31_model_0_CopA.cif A (#25.1) to map |
| 58860 | | relion_locres_filtered_20240326_GT.mrc (#1) using 5009 atoms |
| 58861 | | average map value = 0.008583, steps = 68 |
| 58862 | | shifted from previous position = 0.841 |
| 58863 | | rotated from previous position = 2.63 degrees |
| 58864 | | atoms outside contour = 2386, contour level = 0.0073613 |
| 58865 | | |
| 58866 | | Position of 2024_06_04_12_31_model_0_CopA.cif A (#25.1) relative to |
| 58867 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 58868 | | Matrix rotation and translation |
| 58869 | | 0.72960486 0.04624134 0.68230381 220.93350354 |
| 58870 | | 0.64220662 0.29658780 -0.70682836 260.25489256 |
| 58871 | | -0.23504768 0.95388543 0.18669540 256.90234719 |
| 58872 | | Axis 0.83510136 0.46129651 0.29968524 |
| 58873 | | Axis point 0.00000000 -25.87166094 144.93945606 |
| 58874 | | Rotation angle (degrees) 83.88963054 |
| 58875 | | Shift along axis 381.54638528 |
| 58876 | | |
| 58877 | | |
| 58878 | | > show #!1 models |
| 58879 | | |
| 58880 | | > show #!33 models |
| 58881 | | |
| 58882 | | > hide #!1 models |
| 58883 | | |
| 58884 | | > hide #!25.1 models |
| 58885 | | |
| 58886 | | > show #!25.1 models |
| 58887 | | |
| 58888 | | > hide #!25.1 models |
| 58889 | | |
| 58890 | | Drag select of 605 residues |
| 58891 | | |
| 58892 | | > delete sel |
| 58893 | | |
| 58894 | | Drag select of 11 residues, 1 pseudobonds |
| 58895 | | Drag select of 12 residues |
| 58896 | | |
| 58897 | | > select up |
| 58898 | | |
| 58899 | | 139 atoms, 140 bonds, 17 residues, 1 model selected |
| 58900 | | |
| 58901 | | > select clear |
| 58902 | | |
| 58903 | | Drag select of 14 residues, 1 pseudobonds |
| 58904 | | |
| 58905 | | > delete sel |
| 58906 | | |
| 58907 | | > select clear |
| 58908 | | |
| 58909 | | [Repeated 1 time(s)] |
| 58910 | | |
| 58911 | | > fitmap #33 inMap #1 |
| 58912 | | |
| 58913 | | Fit molecule copy of 2024_06_04_12_31_model_0_CopA.cif A (#33) to map |
| 58914 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1255 atoms |
| 58915 | | average map value = 0.01015, steps = 68 |
| 58916 | | shifted from previous position = 6.46 |
| 58917 | | rotated from previous position = 7.67 degrees |
| 58918 | | atoms outside contour = 557, contour level = 0.0073613 |
| 58919 | | |
| 58920 | | Position of copy of 2024_06_04_12_31_model_0_CopA.cif A (#33) relative to |
| 58921 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 58922 | | Matrix rotation and translation |
| 58923 | | 0.83497221 0.02462714 0.54974076 216.64059216 |
| 58924 | | 0.51007972 0.34023297 -0.78997481 253.86750709 |
| 58925 | | -0.20649476 0.94001863 0.27152327 263.80669951 |
| 58926 | | Axis 0.88741727 0.38791850 0.24901771 |
| 58927 | | Axis point 0.00000000 -44.20380174 183.25726602 |
| 58928 | | Rotation angle (degrees) 77.09329231 |
| 58929 | | Shift along axis 356.42304552 |
| 58930 | | |
| 58931 | | |
| 58932 | | > show #!1 models |
| 58933 | | |
| 58934 | | > show #!25.1 models |
| 58935 | | |
| 58936 | | > hide #!1 models |
| 58937 | | |
| 58938 | | > rename #25.1 "2024_06_04_12_31_model_0_CopA_M1-L620.cif A" |
| 58939 | | |
| 58940 | | > rename #33 "2024_06_04_12_31_model_0_CopA_L620-.cif A" |
| 58941 | | |
| 58942 | | > rename #33 "2024_06_04_12_31_model_0_CopA_L620-T777.cif A" |
| 58943 | | |
| 58944 | | > show #!17 models |
| 58945 | | |
| 58946 | | > show #!14 models |
| 58947 | | |
| 58948 | | > hide #!17 models |
| 58949 | | |
| 58950 | | > hide #!14 models |
| 58951 | | |
| 58952 | | > hide #!25.1 models |
| 58953 | | |
| 58954 | | > hide #!33 models |
| 58955 | | |
| 58956 | | > show #25.2 models |
| 58957 | | |
| 58958 | | > show #!16 models |
| 58959 | | |
| 58960 | | > show #!15 models |
| 58961 | | |
| 58962 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 58963 | | > dataset/Structure files/alphafold 3 /GT 20240604 |
| 58964 | | > /fold_2024_06_04_12_31/20240710_leaf_fitting_alphafold_only_withAF3_v5.cxs" |
| 58965 | | |
| 58966 | | ——— End of log from Fri Jul 12 14:16:12 2024 ——— |
| 58967 | | |
| 58968 | | opened ChimeraX session |
| 58969 | | |
| 58970 | | > show #!1 models |
| 58971 | | |
| 58972 | | > hide #!16 models |
| 58973 | | |
| 58974 | | > show #!16 models |
| 58975 | | |
| 58976 | | > hide #!15 models |
| 58977 | | |
| 58978 | | > hide #!16 models |
| 58979 | | |
| 58980 | | > show #!25.1 models |
| 58981 | | |
| 58982 | | > show #25.3 models |
| 58983 | | |
| 58984 | | > show #25.4 models |
| 58985 | | |
| 58986 | | > show #25.5 models |
| 58987 | | |
| 58988 | | > show #25.6 models |
| 58989 | | |
| 58990 | | > show #25.7 models |
| 58991 | | |
| 58992 | | > show #25.8 models |
| 58993 | | |
| 58994 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 58995 | | > dataset/Structure files/alphafold 3 /GT 20240604 |
| 58996 | | > /fold_2024_06_04_12_31/20240711_leaf_fitting_alphafold_only_withAF3_v6.cxs" |
| 58997 | | |
| 58998 | | > show #!30 models |
| 58999 | | |
| 59000 | | > hide #!30 models |
| 59001 | | |
| 59002 | | > show #27.2 models |
| 59003 | | |
| 59004 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 59005 | | > dataset/Structure files/alphafold 3 /GT 20240604 |
| 59006 | | > /fold_2024_06_04_12_31/20240711_leaf_fitting_alphafold_only_withAF3_v6.cxs" |
| 59007 | | |
| 59008 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 59009 | | > dataset/Structure files/alphafold 3 |
| 59010 | | > /fold_20240711_copi_golph3/fold_20240711_copi_golph3_full_data_0.json" |
| 59011 | | |
| 59012 | | Traceback (most recent call last): |
| 59013 | | File |
| 59014 | | "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 59015 | | packages/chimerax/open_command/dialog.py", line 334, in _qt_safe |
| 59016 | | run(session, "open " + " ".join([FileNameArg.unparse(p) for p in paths]) + ("" |
| 59017 | | File |
| 59018 | | "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 59019 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 59020 | | results = command.run(text, log=log, return_json=return_json) |
| 59021 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 59022 | | File |
| 59023 | | "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 59024 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 59025 | | result = ci.function(session, **kw_args) |
| 59026 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 59027 | | File |
| 59028 | | "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 59029 | | packages/chimerax/open_command/cmd.py", line 131, in cmd_open |
| 59030 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 59031 | | log=log)[0] |
| 59032 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 59033 | | File |
| 59034 | | "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 59035 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 59036 | | result = ci.function(session, **kw_args) |
| 59037 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 59038 | | File |
| 59039 | | "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 59040 | | packages/chimerax/open_command/cmd.py", line 213, in provider_open |
| 59041 | | models, status = collated_open(session, None, [data], data_format, |
| 59042 | | _add_models, |
| 59043 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 59044 | | File |
| 59045 | | "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 59046 | | packages/chimerax/open_command/cmd.py", line 513, in collated_open |
| 59047 | | return remember_data_format() |
| 59048 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 59049 | | File |
| 59050 | | "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 59051 | | packages/chimerax/open_command/cmd.py", line 484, in remember_data_format |
| 59052 | | models, status = func(*func_args, **func_kw) |
| 59053 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 59054 | | File |
| 59055 | | "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 59056 | | packages/chimerax/alphafold/__init__.py", line 129, in open |
| 59057 | | structs = [m for m in session.models.list(type = AtomicStructure) |
| 59058 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 59059 | | File |
| 59060 | | "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 59061 | | packages/chimerax/alphafold/__init__.py", line 130, in <listcomp> |
| 59062 | | if hasattr(m, 'filename') and dirname(m.filename) == dirname(path)] |
| 59063 | | ^^^^^^^^^^^^^^^^^^^ |
| 59064 | | File "<frozen posixpath>", line 152, in dirname |
| 59065 | | TypeError: expected str, bytes or os.PathLike object, not NoneType |
| 59066 | | |
| 59067 | | TypeError: expected str, bytes or os.PathLike object, not NoneType |
| 59068 | | |
| 59069 | | File "", line 152, in dirname |
| 59070 | | |
| 59071 | | See log for complete Python traceback. |
| 59072 | | |
| 59073 | | |
| 59074 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 59075 | | > dataset/Structure files/alphafold 3 |
| 59076 | | > /fold_20240711_copi_golph3/fold_20240711_copi_golph3_model_0.cif" |
| 59077 | | |
| 59078 | | Chain information for fold_20240711_copi_golph3_model_0.cif #34 |
| 59079 | | --- |
| 59080 | | Chain | Description |
| 59081 | | A | . |
| 59082 | | B C | . |
| 59083 | | D | . |
| 59084 | | E | . |
| 59085 | | F | . |
| 59086 | | G | . |
| 59087 | | H | . |
| 59088 | | I | . |
| 59089 | | |
| 59090 | | |
| 59091 | | > select add #34 |
| 59092 | | |
| 59093 | | 35468 atoms, 36117 bonds, 4477 residues, 1 model selected |
| 59094 | | |
| 59095 | | > hide sel atoms |
| 59096 | | |
| 59097 | | > show sel cartoons |
| 59098 | | |
| 59099 | | > ui mousemode right "translate selected models" |
| 59100 | | |
| 59101 | | > view matrix models #34,1,0,0,383.59,0,1,0,259.53,0,0,1,227.72 |
| 59102 | | |
| 59103 | | > view matrix models #34,1,0,0,320.11,0,1,0,310.5,0,0,1,342.85 |
| 59104 | | |
| 59105 | | > select subtract #34 |
| 59106 | | |
| 59107 | | Nothing selected |
| 59108 | | |
| 59109 | | > ui tool show Matchmaker |
| 59110 | | |
| 59111 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 59112 | | QTBUG which explains how to reproduce. |
| 59113 | | |
| 59114 | | > matchmaker #34 to #2 |
| 59115 | | |
| 59116 | | Parameters |
| 59117 | | --- |
| 59118 | | Chain pairing | bb |
| 59119 | | Alignment algorithm | Needleman-Wunsch |
| 59120 | | Similarity matrix | BLOSUM-62 |
| 59121 | | SS fraction | 0.3 |
| 59122 | | Gap open (HH/SS/other) | 18/18/6 |
| 59123 | | Gap extend | 1 |
| 59124 | | SS matrix | | | H | S | O |
| 59125 | | ---|---|---|--- |
| 59126 | | H | 6 | -9 | -6 |
| 59127 | | S | | 6 | -6 |
| 59128 | | O | | | 4 |
| 59129 | | Iteration cutoff | 2 |
| 59130 | | |
| 59131 | | Matchmaker CopA-Q8CIE6_E320-V642.pdb, chain A (#2) with |
| 59132 | | fold_20240711_copi_golph3_model_0.cif, chain D (#34), sequence alignment score |
| 59133 | | = 3817.3 |
| 59134 | | RMSD between 298 pruned atom pairs is 0.587 angstroms; (across all 324 pairs: |
| 59135 | | 1.078) |
| 59136 | | |
| 59137 | | |
| 59138 | | > hide #!25 models |
| 59139 | | |
| 59140 | | > hide #27.2 models |
| 59141 | | |
| 59142 | | > ui tool show "Fit in Map" |
| 59143 | | |
| 59144 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 59145 | | QTBUG which explains how to reproduce. |
| 59146 | | |
| 59147 | | > fitmap #34 inMap #1 |
| 59148 | | |
| 59149 | | Fit molecule fold_20240711_copi_golph3_model_0.cif (#34) to map |
| 59150 | | relion_locres_filtered_20240326_GT.mrc (#1) using 35468 atoms |
| 59151 | | average map value = 0.00656, steps = 116 |
| 59152 | | shifted from previous position = 6.74 |
| 59153 | | rotated from previous position = 3.63 degrees |
| 59154 | | atoms outside contour = 22252, contour level = 0.0073613 |
| 59155 | | |
| 59156 | | Position of fold_20240711_copi_golph3_model_0.cif (#34) relative to |
| 59157 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 59158 | | Matrix rotation and translation |
| 59159 | | 0.58546173 0.33589766 0.73783964 228.27558541 |
| 59160 | | -0.09809695 -0.87408690 0.47576158 252.58695297 |
| 59161 | | 0.80474316 -0.35092001 -0.47879389 262.95256421 |
| 59162 | | Axis -0.88313937 -0.07147266 -0.46363403 |
| 59163 | | Axis point 0.00000000 131.76923686 39.45816280 |
| 59164 | | Rotation angle (degrees) 152.09313163 |
| 59165 | | Shift along axis -341.56597663 |
| 59166 | | |
| 59167 | | |
| 59168 | | > split chains #34 |
| 59169 | | |
| 59170 | | Expected a keyword |
| 59171 | | |
| 59172 | | > split #34 chains |
| 59173 | | |
| 59174 | | Split fold_20240711_copi_golph3_model_0.cif (#34) into 9 models |
| 59175 | | Chain information for fold_20240711_copi_golph3_model_0.cif A #34.1 |
| 59176 | | --- |
| 59177 | | Chain | Description |
| 59178 | | A | No description available |
| 59179 | | |
| 59180 | | Chain information for fold_20240711_copi_golph3_model_0.cif B #34.2 |
| 59181 | | --- |
| 59182 | | Chain | Description |
| 59183 | | B | No description available |
| 59184 | | |
| 59185 | | Chain information for fold_20240711_copi_golph3_model_0.cif C #34.3 |
| 59186 | | --- |
| 59187 | | Chain | Description |
| 59188 | | C | No description available |
| 59189 | | |
| 59190 | | Chain information for fold_20240711_copi_golph3_model_0.cif D #34.4 |
| 59191 | | --- |
| 59192 | | Chain | Description |
| 59193 | | D | No description available |
| 59194 | | |
| 59195 | | Chain information for fold_20240711_copi_golph3_model_0.cif E #34.5 |
| 59196 | | --- |
| 59197 | | Chain | Description |
| 59198 | | E | No description available |
| 59199 | | |
| 59200 | | Chain information for fold_20240711_copi_golph3_model_0.cif F #34.6 |
| 59201 | | --- |
| 59202 | | Chain | Description |
| 59203 | | F | No description available |
| 59204 | | |
| 59205 | | Chain information for fold_20240711_copi_golph3_model_0.cif G #34.7 |
| 59206 | | --- |
| 59207 | | Chain | Description |
| 59208 | | G | No description available |
| 59209 | | |
| 59210 | | Chain information for fold_20240711_copi_golph3_model_0.cif H #34.8 |
| 59211 | | --- |
| 59212 | | Chain | Description |
| 59213 | | H | No description available |
| 59214 | | |
| 59215 | | Chain information for fold_20240711_copi_golph3_model_0.cif I #34.9 |
| 59216 | | --- |
| 59217 | | Chain | Description |
| 59218 | | I | No description available |
| 59219 | | |
| 59220 | | |
| 59221 | | > hide #34.1 models |
| 59222 | | |
| 59223 | | > hide #34.2 models |
| 59224 | | |
| 59225 | | > hide #34.3 models |
| 59226 | | |
| 59227 | | > hide #34.4 models |
| 59228 | | |
| 59229 | | > hide #34.5 models |
| 59230 | | |
| 59231 | | > hide #34.6 models |
| 59232 | | |
| 59233 | | > hide #34.7 models |
| 59234 | | |
| 59235 | | > hide #34.8 models |
| 59236 | | |
| 59237 | | > hide #34.9 models |
| 59238 | | |
| 59239 | | > show #34.1 models |
| 59240 | | |
| 59241 | | > color #34.1 #b21effff |
| 59242 | | |
| 59243 | | > fitmap #34.1 inMap #1 |
| 59244 | | |
| 59245 | | Fit molecule fold_20240711_copi_golph3_model_0.cif A (#34.1) to map |
| 59246 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2371 atoms |
| 59247 | | average map value = 0.00748, steps = 68 |
| 59248 | | shifted from previous position = 6.3 |
| 59249 | | rotated from previous position = 8.74 degrees |
| 59250 | | atoms outside contour = 1259, contour level = 0.0073613 |
| 59251 | | |
| 59252 | | Position of fold_20240711_copi_golph3_model_0.cif A (#34.1) relative to |
| 59253 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 59254 | | Matrix rotation and translation |
| 59255 | | 0.52771432 0.46260878 0.71239786 230.68377417 |
| 59256 | | 0.01556661 -0.84381163 0.53641367 257.97236074 |
| 59257 | | 0.84927927 -0.27198355 -0.45249273 263.23110022 |
| 59258 | | Axis -0.86565399 -0.14657638 -0.47870506 |
| 59259 | | Axis point -0.00000000 122.22516554 38.53470155 |
| 59260 | | Rotation angle (degrees) 152.16489046 |
| 59261 | | Shift along axis -363.51504457 |
| 59262 | | |
| 59263 | | |
| 59264 | | > hide #34.1 models |
| 59265 | | |
| 59266 | | > show #34.2 models |
| 59267 | | |
| 59268 | | > color #34.2 #ff009eff |
| 59269 | | |
| 59270 | | > fitmap #34.2 inMap #1 |
| 59271 | | |
| 59272 | | Fit molecule fold_20240711_copi_golph3_model_0.cif B (#34.2) to map |
| 59273 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1457 atoms |
| 59274 | | average map value = 0.007695, steps = 80 |
| 59275 | | shifted from previous position = 6.24 |
| 59276 | | rotated from previous position = 5.68 degrees |
| 59277 | | atoms outside contour = 834, contour level = 0.0073613 |
| 59278 | | |
| 59279 | | Position of fold_20240711_copi_golph3_model_0.cif B (#34.2) relative to |
| 59280 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 59281 | | Matrix rotation and translation |
| 59282 | | 0.64416681 0.35711118 0.67640278 226.66433422 |
| 59283 | | -0.02970052 -0.87197447 0.48864957 253.33862049 |
| 59284 | | 0.76430818 -0.33486135 -0.55109063 256.83042733 |
| 59285 | | Axis -0.90092929 -0.09616940 -0.42317592 |
| 59286 | | Axis point 0.00000000 129.89043181 45.52689960 |
| 59287 | | Rotation angle (degrees) 152.80410812 |
| 59288 | | Shift along axis -337.25641452 |
| 59289 | | |
| 59290 | | |
| 59291 | | > hide #34.2 models |
| 59292 | | |
| 59293 | | > show #34.3 models |
| 59294 | | |
| 59295 | | > color #34.3 #ff00a9ff |
| 59296 | | |
| 59297 | | > fitmap #34.3 inMap #1 |
| 59298 | | |
| 59299 | | Fit molecule fold_20240711_copi_golph3_model_0.cif C (#34.3) to map |
| 59300 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1457 atoms |
| 59301 | | average map value = 0.007717, steps = 120 |
| 59302 | | shifted from previous position = 16.1 |
| 59303 | | rotated from previous position = 2.93 degrees |
| 59304 | | atoms outside contour = 821, contour level = 0.0073613 |
| 59305 | | |
| 59306 | | Position of fold_20240711_copi_golph3_model_0.cif C (#34.3) relative to |
| 59307 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 59308 | | Matrix rotation and translation |
| 59309 | | 0.55724589 0.30890177 0.77075075 216.26500571 |
| 59310 | | -0.12170943 -0.88781537 0.44381380 253.82096759 |
| 59311 | | 0.82137923 -0.34112105 -0.45713520 251.42339780 |
| 59312 | | Axis -0.87533713 -0.05645945 -0.48020542 |
| 59313 | | Axis point 0.00000000 132.87199639 34.54285231 |
| 59314 | | Rotation angle (degrees) 153.36139527 |
| 59315 | | Shift along axis -324.37025870 |
| 59316 | | |
| 59317 | | |
| 59318 | | > hide #34.3 models |
| 59319 | | |
| 59320 | | > show #34.3 models |
| 59321 | | |
| 59322 | | > hide #34.3 models |
| 59323 | | |
| 59324 | | > show #34.4 models |
| 59325 | | |
| 59326 | | > color #34.4 #0024ffff |
| 59327 | | |
| 59328 | | > fitmap #34.4 inMap #1 |
| 59329 | | |
| 59330 | | Fit molecule fold_20240711_copi_golph3_model_0.cif D (#34.4) to map |
| 59331 | | relion_locres_filtered_20240326_GT.mrc (#1) using 7166 atoms |
| 59332 | | average map value = 0.007568, steps = 68 |
| 59333 | | shifted from previous position = 3.39 |
| 59334 | | rotated from previous position = 1.98 degrees |
| 59335 | | atoms outside contour = 3864, contour level = 0.0073613 |
| 59336 | | |
| 59337 | | Position of fold_20240711_copi_golph3_model_0.cif D (#34.4) relative to |
| 59338 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 59339 | | Matrix rotation and translation |
| 59340 | | 0.56992681 0.36183288 0.73774006 227.91110670 |
| 59341 | | -0.07205669 -0.87235986 0.48352467 256.55796769 |
| 59342 | | 0.81852994 -0.32873278 -0.47110879 263.77891615 |
| 59343 | | Axis -0.87866866 -0.08739536 -0.46936494 |
| 59344 | | Axis point 0.00000000 131.04482198 39.47393179 |
| 59345 | | Rotation angle (degrees) 152.47024536 |
| 59346 | | Shift along axis -346.48889708 |
| 59347 | | |
| 59348 | | |
| 59349 | | > fitmap #34.4 inMap #1 |
| 59350 | | |
| 59351 | | Fit molecule fold_20240711_copi_golph3_model_0.cif D (#34.4) to map |
| 59352 | | relion_locres_filtered_20240326_GT.mrc (#1) using 7166 atoms |
| 59353 | | average map value = 0.007567, steps = 44 |
| 59354 | | shifted from previous position = 0.0262 |
| 59355 | | rotated from previous position = 0.00836 degrees |
| 59356 | | atoms outside contour = 3859, contour level = 0.0073613 |
| 59357 | | |
| 59358 | | Position of fold_20240711_copi_golph3_model_0.cif D (#34.4) relative to |
| 59359 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 59360 | | Matrix rotation and translation |
| 59361 | | 0.56999916 0.36178137 0.73770943 227.93094964 |
| 59362 | | -0.07197947 -0.87240559 0.48345366 256.54968376 |
| 59363 | | 0.81848635 -0.32866811 -0.47122963 263.79414942 |
| 59364 | | Axis -0.87869372 -0.08739844 -0.46931745 |
| 59365 | | Axis point 0.00000000 131.03935522 39.49351975 |
| 59366 | | Rotation angle (degrees) 152.47608536 |
| 59367 | | Shift along axis -346.50673304 |
| 59368 | | |
| 59369 | | |
| 59370 | | > hide #34.4 models |
| 59371 | | |
| 59372 | | > show #34.5 models |
| 59373 | | |
| 59374 | | > fitmap #34.5 inMap #1 |
| 59375 | | |
| 59376 | | Fit molecule fold_20240711_copi_golph3_model_0.cif E (#34.5) to map |
| 59377 | | relion_locres_filtered_20240326_GT.mrc (#1) using 7501 atoms |
| 59378 | | average map value = 0.008391, steps = 104 |
| 59379 | | shifted from previous position = 1.23 |
| 59380 | | rotated from previous position = 1.02 degrees |
| 59381 | | atoms outside contour = 4038, contour level = 0.0073613 |
| 59382 | | |
| 59383 | | Position of fold_20240711_copi_golph3_model_0.cif E (#34.5) relative to |
| 59384 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 59385 | | Matrix rotation and translation |
| 59386 | | 0.58719953 0.35086370 0.72944594 227.28064832 |
| 59387 | | -0.08423493 -0.86979043 0.48617805 251.90546793 |
| 59388 | | 0.80504732 -0.34692835 -0.48118555 262.65301991 |
| 59389 | | Axis -0.88354151 -0.08017819 -0.46143890 |
| 59390 | | Axis point 0.00000000 130.49029375 40.15321991 |
| 59391 | | Rotation angle (degrees) 151.87098420 |
| 59392 | | Shift along axis -342.20753257 |
| 59393 | | |
| 59394 | | |
| 59395 | | > fitmap #34.5 inMap #1 |
| 59396 | | |
| 59397 | | Fit molecule fold_20240711_copi_golph3_model_0.cif E (#34.5) to map |
| 59398 | | relion_locres_filtered_20240326_GT.mrc (#1) using 7501 atoms |
| 59399 | | average map value = 0.008391, steps = 76 |
| 59400 | | shifted from previous position = 0.0209 |
| 59401 | | rotated from previous position = 0.00496 degrees |
| 59402 | | atoms outside contour = 4035, contour level = 0.0073613 |
| 59403 | | |
| 59404 | | Position of fold_20240711_copi_golph3_model_0.cif E (#34.5) relative to |
| 59405 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 59406 | | Matrix rotation and translation |
| 59407 | | 0.58722470 0.35088756 0.72941420 227.26576357 |
| 59408 | | -0.08415396 -0.86980219 0.48617103 251.91606564 |
| 59409 | | 0.80503743 -0.34687473 -0.48124075 262.66279930 |
| 59410 | | Axis -0.88355045 -0.08020801 -0.46141659 |
| 59411 | | Axis point 0.00000000 130.49372789 40.16867906 |
| 59412 | | Rotation angle (degrees) 151.87352378 |
| 59413 | | Shift along axis -342.20342816 |
| 59414 | | |
| 59415 | | |
| 59416 | | > fitmap #34.5 inMap #1 |
| 59417 | | |
| 59418 | | Fit molecule fold_20240711_copi_golph3_model_0.cif E (#34.5) to map |
| 59419 | | relion_locres_filtered_20240326_GT.mrc (#1) using 7501 atoms |
| 59420 | | average map value = 0.008391, steps = 80 |
| 59421 | | shifted from previous position = 0.011 |
| 59422 | | rotated from previous position = 0.0181 degrees |
| 59423 | | atoms outside contour = 4035, contour level = 0.0073613 |
| 59424 | | |
| 59425 | | Position of fold_20240711_copi_golph3_model_0.cif E (#34.5) relative to |
| 59426 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 59427 | | Matrix rotation and translation |
| 59428 | | 0.58741011 0.35090953 0.72925432 227.26213947 |
| 59429 | | -0.08392848 -0.86983144 0.48615767 251.91860141 |
| 59430 | | 0.80492569 -0.34677914 -0.48149648 262.64949044 |
| 59431 | | Axis -0.88360949 -0.08027493 -0.46129189 |
| 59432 | | Axis point 0.00000000 130.48784527 40.19498052 |
| 59433 | | Rotation angle (degrees) 151.87957518 |
| 59434 | | Shift along axis -342.19181048 |
| 59435 | | |
| 59436 | | |
| 59437 | | > fitmap #34.5 inMap #1 |
| 59438 | | |
| 59439 | | Fit molecule fold_20240711_copi_golph3_model_0.cif E (#34.5) to map |
| 59440 | | relion_locres_filtered_20240326_GT.mrc (#1) using 7501 atoms |
| 59441 | | average map value = 0.008392, steps = 96 |
| 59442 | | shifted from previous position = 0.0102 |
| 59443 | | rotated from previous position = 0.00763 degrees |
| 59444 | | atoms outside contour = 4036, contour level = 0.0073613 |
| 59445 | | |
| 59446 | | Position of fold_20240711_copi_golph3_model_0.cif E (#34.5) relative to |
| 59447 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 59448 | | Matrix rotation and translation |
| 59449 | | 0.58750289 0.35083317 0.72921632 227.26656106 |
| 59450 | | -0.08398670 -0.86983061 0.48614910 251.92182627 |
| 59451 | | 0.80485191 -0.34685847 -0.48156267 262.64059694 |
| 59452 | | Axis -0.88363648 -0.08023260 -0.46124755 |
| 59453 | | Axis point 0.00000000 130.49742196 40.19320920 |
| 59454 | | Rotation angle (degrees) 151.87790907 |
| 59455 | | Shift along axis -342.17569793 |
| 59456 | | |
| 59457 | | |
| 59458 | | > color #34.5 #0a6f00ff |
| 59459 | | |
| 59460 | | > show #32.1 models |
| 59461 | | |
| 59462 | | > hide #32.1 models |
| 59463 | | |
| 59464 | | > show #32.1 models |
| 59465 | | |
| 59466 | | > hide #32.1 models |
| 59467 | | |
| 59468 | | > hide #34.5 models |
| 59469 | | |
| 59470 | | > show #34.6 models |
| 59471 | | |
| 59472 | | > color #34.6 cyan |
| 59473 | | |
| 59474 | | > fitmap #34.6 inMap #1 |
| 59475 | | |
| 59476 | | Fit molecule fold_20240711_copi_golph3_model_0.cif F (#34.6) to map |
| 59477 | | relion_locres_filtered_20240326_GT.mrc (#1) using 7214 atoms |
| 59478 | | average map value = 0.008416, steps = 88 |
| 59479 | | shifted from previous position = 2.83 |
| 59480 | | rotated from previous position = 5.13 degrees |
| 59481 | | atoms outside contour = 3516, contour level = 0.0073613 |
| 59482 | | |
| 59483 | | Position of fold_20240711_copi_golph3_model_0.cif F (#34.6) relative to |
| 59484 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 59485 | | Matrix rotation and translation |
| 59486 | | 0.58316797 0.35661943 0.72988883 229.42465943 |
| 59487 | | -0.01511797 -0.89356886 0.44867152 249.28076519 |
| 59488 | | 0.81221092 -0.27268529 -0.51570938 258.75772005 |
| 59489 | | Axis -0.88437088 -0.10092544 -0.45574357 |
| 59490 | | Axis point 0.00000000 123.73222530 44.42705025 |
| 59491 | | Rotation angle (degrees) 155.93102330 |
| 59492 | | Shift along axis -345.98242545 |
| 59493 | | |
| 59494 | | |
| 59495 | | > hide #34.6 models |
| 59496 | | |
| 59497 | | > show #34.7 models |
| 59498 | | |
| 59499 | | > fitmap #34.7 inMap #1 |
| 59500 | | |
| 59501 | | Fit molecule fold_20240711_copi_golph3_model_0.cif G (#34.7) to map |
| 59502 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2130 atoms |
| 59503 | | average map value = 0.007774, steps = 60 |
| 59504 | | shifted from previous position = 3.19 |
| 59505 | | rotated from previous position = 3.76 degrees |
| 59506 | | atoms outside contour = 1200, contour level = 0.0073613 |
| 59507 | | |
| 59508 | | Position of fold_20240711_copi_golph3_model_0.cif G (#34.7) relative to |
| 59509 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 59510 | | Matrix rotation and translation |
| 59511 | | 0.60590881 0.38239877 0.69759995 225.80992915 |
| 59512 | | -0.05307526 -0.85551020 0.51505855 251.49460333 |
| 59513 | | 0.79376163 -0.34910382 -0.49806526 260.96610639 |
| 59514 | | Axis -0.88864344 -0.09888587 -0.44781069 |
| 59515 | | Axis point 0.00000000 128.89841076 41.81263691 |
| 59516 | | Rotation angle (degrees) 150.90719891 |
| 59517 | | Shift along axis -342.39718752 |
| 59518 | | |
| 59519 | | |
| 59520 | | > fitmap #34.7 inMap #1 |
| 59521 | | |
| 59522 | | Fit molecule fold_20240711_copi_golph3_model_0.cif G (#34.7) to map |
| 59523 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2130 atoms |
| 59524 | | average map value = 0.007775, steps = 44 |
| 59525 | | shifted from previous position = 0.0414 |
| 59526 | | rotated from previous position = 0.0326 degrees |
| 59527 | | atoms outside contour = 1203, contour level = 0.0073613 |
| 59528 | | |
| 59529 | | Position of fold_20240711_copi_golph3_model_0.cif G (#34.7) relative to |
| 59530 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 59531 | | Matrix rotation and translation |
| 59532 | | 0.60610451 0.38203307 0.69763032 225.82071776 |
| 59533 | | -0.05295935 -0.85576756 0.51464279 251.53576995 |
| 59534 | | 0.79361996 -0.34887336 -0.49845235 260.95147721 |
| 59535 | | Axis -0.88871636 -0.09879093 -0.44768692 |
| 59536 | | Axis point 0.00000000 128.92145471 41.84455385 |
| 59537 | | Rotation angle (degrees) 150.93364992 |
| 59538 | | Shift along axis -342.36458246 |
| 59539 | | |
| 59540 | | |
| 59541 | | > color #34.7 #bf6300ff |
| 59542 | | |
| 59543 | | > hide #34.7 models |
| 59544 | | |
| 59545 | | > show #34.8 models |
| 59546 | | |
| 59547 | | > fitmap #34.8 inMap #1 |
| 59548 | | |
| 59549 | | Fit molecule fold_20240711_copi_golph3_model_0.cif H (#34.8) to map |
| 59550 | | relion_locres_filtered_20240326_GT.mrc (#1) using 4752 atoms |
| 59551 | | average map value = 0.007743, steps = 128 |
| 59552 | | shifted from previous position = 7.22 |
| 59553 | | rotated from previous position = 9.05 degrees |
| 59554 | | atoms outside contour = 2924, contour level = 0.0073613 |
| 59555 | | |
| 59556 | | Position of fold_20240711_copi_golph3_model_0.cif H (#34.8) relative to |
| 59557 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 59558 | | Matrix rotation and translation |
| 59559 | | 0.60711318 0.39430654 0.68988111 230.62646417 |
| 59560 | | -0.16058066 -0.78940106 0.59250301 257.81976511 |
| 59561 | | 0.77822069 -0.47049795 -0.41593778 262.55156168 |
| 59562 | | Axis -0.88409384 -0.07347169 -0.46149756 |
| 59563 | | Axis point 0.00000000 138.94204460 27.13554287 |
| 59564 | | Rotation angle (degrees) 143.04546715 |
| 59565 | | Shift along axis -344.00479526 |
| 59566 | | |
| 59567 | | |
| 59568 | | > color #34.8 #24fa00ff |
| 59569 | | |
| 59570 | | > hide #34.8 models |
| 59571 | | |
| 59572 | | > color #34.9 #eff0f0ff |
| 59573 | | |
| 59574 | | > color #34.9 #fffa00ff |
| 59575 | | |
| 59576 | | > show #34.9 models |
| 59577 | | |
| 59578 | | > fitmap #34.9 inMap #1 |
| 59579 | | |
| 59580 | | Fit molecule fold_20240711_copi_golph3_model_0.cif I (#34.9) to map |
| 59581 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1420 atoms |
| 59582 | | average map value = 0.007202, steps = 180 |
| 59583 | | shifted from previous position = 14.7 |
| 59584 | | rotated from previous position = 20.8 degrees |
| 59585 | | atoms outside contour = 883, contour level = 0.0073613 |
| 59586 | | |
| 59587 | | Position of fold_20240711_copi_golph3_model_0.cif I (#34.9) relative to |
| 59588 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 59589 | | Matrix rotation and translation |
| 59590 | | 0.74653717 0.33711316 0.57361745 245.26298776 |
| 59591 | | 0.15110497 -0.92551307 0.34726481 263.21012299 |
| 59592 | | 0.64795798 -0.17256964 -0.74186938 278.68417065 |
| 59593 | | Axis -0.93311848 -0.13344349 -0.33389029 |
| 59594 | | Axis point 0.00000000 126.20926941 79.04979370 |
| 59595 | | Rotation angle (degrees) 163.82650418 |
| 59596 | | Shift along axis -357.03304509 |
| 59597 | | |
| 59598 | | |
| 59599 | | > hide #!1 models |
| 59600 | | |
| 59601 | | > show #10 models |
| 59602 | | |
| 59603 | | > hide #10 models |
| 59604 | | |
| 59605 | | > show #10 models |
| 59606 | | |
| 59607 | | > hide #34.9 models |
| 59608 | | |
| 59609 | | > show #34.9 models |
| 59610 | | |
| 59611 | | > select add #34.9 |
| 59612 | | |
| 59613 | | 1420 atoms, 1441 bonds, 177 residues, 1 model selected |
| 59614 | | |
| 59615 | | > view matrix models |
| 59616 | | > #34.9,0.74828,0.34766,0.56499,301.82,0.15396,-0.91943,0.36186,343.01,0.64527,-0.18378,-0.74152,352.83 |
| 59617 | | |
| 59618 | | > ui mousemode right "rotate selected models" |
| 59619 | | |
| 59620 | | > view matrix models |
| 59621 | | > #34.9,0.37364,0.83003,0.41405,310.38,0.82373,-0.091695,-0.55951,370.79,-0.42645,0.55013,-0.71799,360.84 |
| 59622 | | |
| 59623 | | > view matrix models |
| 59624 | | > #34.9,-0.78088,0.59563,0.18825,341.65,0.61218,0.66973,0.42035,317.47,0.12429,0.44349,-0.88762,361.96 |
| 59625 | | |
| 59626 | | > view matrix models |
| 59627 | | > #34.9,-0.35045,0.13998,0.92606,302.58,-0.5316,0.78433,-0.31973,370.91,-0.77109,-0.60434,-0.20046,351.51 |
| 59628 | | |
| 59629 | | > view matrix models |
| 59630 | | > #34.9,0.10437,0.19584,0.97507,292.62,-0.42105,0.89692,-0.13507,358.86,-0.90101,-0.39645,0.17607,332.6 |
| 59631 | | |
| 59632 | | > fitmap #34.9 inMap #1 |
| 59633 | | |
| 59634 | | Fit molecule fold_20240711_copi_golph3_model_0.cif I (#34.9) to map |
| 59635 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1420 atoms |
| 59636 | | average map value = 0.007558, steps = 172 |
| 59637 | | shifted from previous position = 5.84 |
| 59638 | | rotated from previous position = 30.3 degrees |
| 59639 | | atoms outside contour = 803, contour level = 0.0073613 |
| 59640 | | |
| 59641 | | Position of fold_20240711_copi_golph3_model_0.cif I (#34.9) relative to |
| 59642 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 59643 | | Matrix rotation and translation |
| 59644 | | -0.26830525 0.10951105 0.95708913 240.47366535 |
| 59645 | | -0.09219807 0.98603763 -0.13866968 276.40976195 |
| 59646 | | -0.95891177 -0.12544757 -0.25446237 278.46557109 |
| 59647 | | Axis 0.00686280 0.99448069 -0.10469506 |
| 59648 | | Axis point 235.50650213 0.00000000 62.60461133 |
| 59649 | | Rotation angle (degrees) 105.56699787 |
| 59650 | | Shift along axis 247.38052555 |
| 59651 | | |
| 59652 | | |
| 59653 | | > view matrix models |
| 59654 | | > #34.9,0.71072,-0.27814,0.64615,307.37,0.22556,-0.77992,-0.58383,387.44,0.66633,0.56068,-0.49157,335.49 |
| 59655 | | |
| 59656 | | > view matrix models |
| 59657 | | > #34.9,0.32684,-0.94017,0.096226,347.28,0.89604,0.2759,-0.34783,355,0.30047,0.19991,0.93261,273.29 |
| 59658 | | |
| 59659 | | > view matrix models |
| 59660 | | > #34.9,-0.062416,-0.94261,-0.32802,374.51,0.92237,0.071062,-0.37971,358.21,0.38123,-0.32626,0.865,280.61 |
| 59661 | | |
| 59662 | | > color #34.9 #73fdffff |
| 59663 | | |
| 59664 | | > view matrix models |
| 59665 | | > #34.9,-0.87509,-0.19817,0.44153,341.08,0.23219,0.62855,0.7423,307.09,-0.42462,0.7521,-0.50403,350.92 |
| 59666 | | |
| 59667 | | > view matrix models |
| 59668 | | > #34.9,-0.45011,0.72378,0.52301,321.45,0.70663,0.64679,-0.28695,351.21,-0.54596,0.24041,-0.80257,372.75 |
| 59669 | | |
| 59670 | | > view matrix models |
| 59671 | | > #34.9,-0.6968,0.27512,0.6624,322.65,0.50668,0.84247,0.18309,328.8,-0.50768,0.4632,-0.72643,366.17 |
| 59672 | | |
| 59673 | | > fitmap #34.9 inMap #1 |
| 59674 | | |
| 59675 | | Fit molecule fold_20240711_copi_golph3_model_0.cif I (#34.9) to map |
| 59676 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1420 atoms |
| 59677 | | average map value = 0.007908, steps = 88 |
| 59678 | | shifted from previous position = 2.18 |
| 59679 | | rotated from previous position = 14 degrees |
| 59680 | | atoms outside contour = 732, contour level = 0.0073613 |
| 59681 | | |
| 59682 | | Position of fold_20240711_copi_golph3_model_0.cif I (#34.9) relative to |
| 59683 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 59684 | | Matrix rotation and translation |
| 59685 | | -0.67161254 0.33110185 0.66280324 259.75065098 |
| 59686 | | 0.40793397 0.91203340 -0.04224840 265.74184674 |
| 59687 | | -0.61848723 0.24200541 -0.74760077 294.34280962 |
| 59688 | | Axis 0.21621363 0.97459545 0.05844127 |
| 59689 | | Axis point 153.26883916 0.00000000 103.06975835 |
| 59690 | | Rotation angle (degrees) 138.90231543 |
| 59691 | | Shift along axis 332.35419188 |
| 59692 | | |
| 59693 | | |
| 59694 | | > view matrix models |
| 59695 | | > #34.9,-0.3835,-0.29515,0.87511,313.33,-0.093113,0.95509,0.28132,333.04,-0.91884,0.0264,-0.39375,360.07 |
| 59696 | | |
| 59697 | | > fitmap #34.9 inMap #1 |
| 59698 | | |
| 59699 | | Fit molecule fold_20240711_copi_golph3_model_0.cif I (#34.9) to map |
| 59700 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1420 atoms |
| 59701 | | average map value = 0.007916, steps = 232 |
| 59702 | | shifted from previous position = 7.32 |
| 59703 | | rotated from previous position = 23.5 degrees |
| 59704 | | atoms outside contour = 740, contour level = 0.0073613 |
| 59705 | | |
| 59706 | | Position of fold_20240711_copi_golph3_model_0.cif I (#34.9) relative to |
| 59707 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 59708 | | Matrix rotation and translation |
| 59709 | | -0.17303343 -0.17503221 0.96923843 241.59813206 |
| 59710 | | 0.25142938 0.94362700 0.21529357 259.75433651 |
| 59711 | | -0.95228287 0.28094801 -0.11927077 273.76469403 |
| 59712 | | Axis 0.03333776 0.97570281 0.21654705 |
| 59713 | | Axis point 204.14769021 0.00000000 8.83996268 |
| 59714 | | Rotation angle (degrees) 100.04017117 |
| 59715 | | Shift along axis 320.78031311 |
| 59716 | | |
| 59717 | | |
| 59718 | | > view matrix models |
| 59719 | | > #34.9,-0.95748,-0.19083,-0.21639,375.58,0.28844,-0.6501,-0.70297,397.03,-0.0065236,-0.73549,0.6775,306.16 |
| 59720 | | |
| 59721 | | > view matrix models |
| 59722 | | > #34.9,-0.90104,-0.29832,-0.31485,380.71,0.43099,-0.5344,-0.72709,394.92,0.048654,-0.79084,0.61009,309.24 |
| 59723 | | |
| 59724 | | > view matrix models |
| 59725 | | > #34.9,-0.88531,-0.33626,-0.32118,381.16,0.45673,-0.49906,-0.73643,394.65,0.087344,-0.79867,0.5954,309.46 |
| 59726 | | |
| 59727 | | > ui mousemode right "translate selected models" |
| 59728 | | |
| 59729 | | > view matrix models |
| 59730 | | > #34.9,-0.88531,-0.33626,-0.32118,372.76,0.45673,-0.49906,-0.73643,381.8,0.087344,-0.79867,0.5954,309.71 |
| 59731 | | |
| 59732 | | > fitmap #34.9 inMap #1 |
| 59733 | | |
| 59734 | | Fit molecule fold_20240711_copi_golph3_model_0.cif I (#34.9) to map |
| 59735 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1420 atoms |
| 59736 | | average map value = 0.007313, steps = 212 |
| 59737 | | shifted from previous position = 10 |
| 59738 | | rotated from previous position = 15.2 degrees |
| 59739 | | atoms outside contour = 862, contour level = 0.0073613 |
| 59740 | | |
| 59741 | | Position of fold_20240711_copi_golph3_model_0.cif I (#34.9) relative to |
| 59742 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 59743 | | Matrix rotation and translation |
| 59744 | | -0.77843807 -0.55264862 -0.29768046 310.77651000 |
| 59745 | | 0.54683725 -0.36417671 -0.75388614 313.10382630 |
| 59746 | | 0.30822585 -0.74963644 0.58569788 232.63476634 |
| 59747 | | Axis 0.00338515 -0.48264302 0.87581063 |
| 59748 | | Axis point 86.62936034 283.23574831 0.00000000 |
| 59749 | | Rotation angle (degrees) 141.11964909 |
| 59750 | | Shift along axis 53.67864989 |
| 59751 | | |
| 59752 | | |
| 59753 | | > view matrix models |
| 59754 | | > #34.9,-0.78344,-0.55233,-0.28489,371.74,0.53391,-0.36355,-0.7634,381.48,0.31807,-0.75018,0.57971,303.13 |
| 59755 | | |
| 59756 | | > ui mousemode right "rotate selected models" |
| 59757 | | |
| 59758 | | > view matrix models |
| 59759 | | > #34.9,-0.62244,-0.50088,0.6014,324.37,-0.021401,0.77901,0.62665,309.13,-0.78238,0.37718,-0.4956,362.76 |
| 59760 | | |
| 59761 | | > view matrix models |
| 59762 | | > #34.9,-0.76847,-0.46048,0.44431,334.08,-0.21176,0.83825,0.50249,317.67,-0.60383,0.29206,-0.74168,373.19 |
| 59763 | | |
| 59764 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 59765 | | QTBUG which explains how to reproduce. |
| 59766 | | |
| 59767 | | > ui mousemode right "translate selected models" |
| 59768 | | |
| 59769 | | > view matrix models |
| 59770 | | > #34.9,-0.76847,-0.46048,0.44431,340.36,-0.21176,0.83825,0.50249,331.15,-0.60383,0.29206,-0.74168,369.61 |
| 59771 | | |
| 59772 | | > view matrix models |
| 59773 | | > #34.9,-0.76847,-0.46048,0.44431,336.23,-0.21176,0.83825,0.50249,331.27,-0.60383,0.29206,-0.74168,369.31 |
| 59774 | | |
| 59775 | | > ui mousemode right "rotate selected models" |
| 59776 | | |
| 59777 | | > view matrix models |
| 59778 | | > #34.9,-0.48926,-0.34807,0.79967,313.05,0.28899,0.80041,0.5252,322.84,-0.82287,0.48805,-0.29102,348.16 |
| 59779 | | |
| 59780 | | > ui mousemode right "translate selected models" |
| 59781 | | |
| 59782 | | > view matrix models |
| 59783 | | > #34.9,-0.48926,-0.34807,0.79967,317.57,0.28899,0.80041,0.5252,328.11,-0.82287,0.48805,-0.29102,351.95 |
| 59784 | | |
| 59785 | | > view matrix models |
| 59786 | | > #34.9,-0.48926,-0.34807,0.79967,319.73,0.28899,0.80041,0.5252,325.65,-0.82287,0.48805,-0.29102,352.6 |
| 59787 | | |
| 59788 | | > fitmap #34.9 inMap #1 |
| 59789 | | |
| 59790 | | Fit molecule fold_20240711_copi_golph3_model_0.cif I (#34.9) to map |
| 59791 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1420 atoms |
| 59792 | | average map value = 0.007916, steps = 120 |
| 59793 | | shifted from previous position = 3.53 |
| 59794 | | rotated from previous position = 23.8 degrees |
| 59795 | | atoms outside contour = 739, contour level = 0.0073613 |
| 59796 | | |
| 59797 | | Position of fold_20240711_copi_golph3_model_0.cif I (#34.9) relative to |
| 59798 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 59799 | | Matrix rotation and translation |
| 59800 | | -0.17363841 -0.17473580 0.96918372 241.60893560 |
| 59801 | | 0.25146371 0.94364305 0.21518312 259.77002142 |
| 59802 | | -0.95216369 0.28107859 -0.11991297 273.77647355 |
| 59803 | | Axis 0.03346386 0.97572269 0.21643797 |
| 59804 | | Axis point 204.09647485 0.00000000 8.93729259 |
| 59805 | | Rotation angle (degrees) 100.07599094 |
| 59806 | | Shift along axis 320.80429641 |
| 59807 | | |
| 59808 | | |
| 59809 | | > select subtract #34.9 |
| 59810 | | |
| 59811 | | Nothing selected |
| 59812 | | |
| 59813 | | > show #!1 models |
| 59814 | | |
| 59815 | | > hide #34.9 models |
| 59816 | | |
| 59817 | | > show #34.9 models |
| 59818 | | |
| 59819 | | > hide #34.9 models |
| 59820 | | |
| 59821 | | > show #34.9 models |
| 59822 | | |
| 59823 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 59824 | | QTBUG which explains how to reproduce. |
| 59825 | | |
| 59826 | | > color #34.9 #fffa00ff |
| 59827 | | |
| 59828 | | > hide #34.9 models |
| 59829 | | |
| 59830 | | > ui tool show Matchmaker |
| 59831 | | |
| 59832 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 59833 | | QTBUG which explains how to reproduce. |
| 59834 | | |
| 59835 | | > matchmaker #34.9 & sel to #10 & sel |
| 59836 | | |
| 59837 | | No 'to' model specified |
| 59838 | | |
| 59839 | | > ui tool show Matchmaker |
| 59840 | | |
| 59841 | | > matchmaker #34.9 & sel to #10 |
| 59842 | | |
| 59843 | | No molecules/chains to match specified |
| 59844 | | |
| 59845 | | > ui tool show Matchmaker |
| 59846 | | |
| 59847 | | > show #34.8 models |
| 59848 | | |
| 59849 | | > show #34.6 models |
| 59850 | | |
| 59851 | | > show #34.7 models |
| 59852 | | |
| 59853 | | > show #34.5 models |
| 59854 | | |
| 59855 | | > show #34.4 models |
| 59856 | | |
| 59857 | | > show #34.3 models |
| 59858 | | |
| 59859 | | > show #34.2 models |
| 59860 | | |
| 59861 | | > show #34.1 models |
| 59862 | | |
| 59863 | | > ui tool show Matchmaker |
| 59864 | | |
| 59865 | | > matchmaker #34.9 to #10 |
| 59866 | | |
| 59867 | | Parameters |
| 59868 | | --- |
| 59869 | | Chain pairing | bb |
| 59870 | | Alignment algorithm | Needleman-Wunsch |
| 59871 | | Similarity matrix | BLOSUM-62 |
| 59872 | | SS fraction | 0.3 |
| 59873 | | Gap open (HH/SS/other) | 18/18/6 |
| 59874 | | Gap extend | 1 |
| 59875 | | SS matrix | | | H | S | O |
| 59876 | | ---|---|---|--- |
| 59877 | | H | 6 | -9 | -6 |
| 59878 | | S | | 6 | -6 |
| 59879 | | O | | | 4 |
| 59880 | | Iteration cutoff | 2 |
| 59881 | | |
| 59882 | | Matchmaker CopZ1_P61924_M1-V153.pdb, chain A (#10) with |
| 59883 | | fold_20240711_copi_golph3_model_0.cif I, chain I (#34.9), sequence alignment |
| 59884 | | score = 834 |
| 59885 | | RMSD between 144 pruned atom pairs is 0.487 angstroms; (across all 153 pairs: |
| 59886 | | 1.639) |
| 59887 | | |
| 59888 | | |
| 59889 | | > show #34.9 models |
| 59890 | | |
| 59891 | | > hide #34.9 models |
| 59892 | | |
| 59893 | | > show #34.9 models |
| 59894 | | |
| 59895 | | > hide #!1 models |
| 59896 | | |
| 59897 | | > hide #10 models |
| 59898 | | |
| 59899 | | > ui tool show Matchmaker |
| 59900 | | |
| 59901 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 59902 | | QTBUG which explains how to reproduce. |
| 59903 | | |
| 59904 | | > show #5 models |
| 59905 | | |
| 59906 | | > hide #5 models |
| 59907 | | |
| 59908 | | > show #5 models |
| 59909 | | |
| 59910 | | > hide #5 models |
| 59911 | | |
| 59912 | | > show #6 models |
| 59913 | | |
| 59914 | | > hide #6 models |
| 59915 | | |
| 59916 | | > show #6 models |
| 59917 | | |
| 59918 | | > hide #6 models |
| 59919 | | |
| 59920 | | > show #6 models |
| 59921 | | |
| 59922 | | > hide #34.2 models |
| 59923 | | |
| 59924 | | > show #34.2 models |
| 59925 | | |
| 59926 | | > ui tool show Matchmaker |
| 59927 | | |
| 59928 | | > matchmaker #34.2 to #6 |
| 59929 | | |
| 59930 | | Parameters |
| 59931 | | --- |
| 59932 | | Chain pairing | bb |
| 59933 | | Alignment algorithm | Needleman-Wunsch |
| 59934 | | Similarity matrix | BLOSUM-62 |
| 59935 | | SS fraction | 0.3 |
| 59936 | | Gap open (HH/SS/other) | 18/18/6 |
| 59937 | | Gap extend | 1 |
| 59938 | | SS matrix | | | H | S | O |
| 59939 | | ---|---|---|--- |
| 59940 | | H | 6 | -9 | -6 |
| 59941 | | S | | 6 | -6 |
| 59942 | | O | | | 4 |
| 59943 | | Iteration cutoff | 2 |
| 59944 | | |
| 59945 | | Matchmaker Arf1-P84077-human.pdb, chain A (#6) with |
| 59946 | | fold_20240711_copi_golph3_model_0.cif B, chain B (#34.2), sequence alignment |
| 59947 | | score = 902.5 |
| 59948 | | RMSD between 160 pruned atom pairs is 0.730 angstroms; (across all 181 pairs: |
| 59949 | | 6.148) |
| 59950 | | |
| 59951 | | |
| 59952 | | > hide #34.3 models |
| 59953 | | |
| 59954 | | > show #34.3 models |
| 59955 | | |
| 59956 | | > hide #6 models |
| 59957 | | |
| 59958 | | > show #22 models |
| 59959 | | |
| 59960 | | > hide #22 models |
| 59961 | | |
| 59962 | | > show #22 models |
| 59963 | | |
| 59964 | | > hide #22 models |
| 59965 | | |
| 59966 | | > show #23 models |
| 59967 | | |
| 59968 | | > hide #23 models |
| 59969 | | |
| 59970 | | > show #23 models |
| 59971 | | |
| 59972 | | > hide #23 models |
| 59973 | | |
| 59974 | | > show #23 models |
| 59975 | | |
| 59976 | | > hide #23 models |
| 59977 | | |
| 59978 | | > ui tool show Matchmaker |
| 59979 | | |
| 59980 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 59981 | | QTBUG which explains how to reproduce. |
| 59982 | | |
| 59983 | | > matchmaker #34.3 to #23 |
| 59984 | | |
| 59985 | | Parameters |
| 59986 | | --- |
| 59987 | | Chain pairing | bb |
| 59988 | | Alignment algorithm | Needleman-Wunsch |
| 59989 | | Similarity matrix | BLOSUM-62 |
| 59990 | | SS fraction | 0.3 |
| 59991 | | Gap open (HH/SS/other) | 18/18/6 |
| 59992 | | Gap extend | 1 |
| 59993 | | SS matrix | | | H | S | O |
| 59994 | | ---|---|---|--- |
| 59995 | | H | 6 | -9 | -6 |
| 59996 | | S | | 6 | -6 |
| 59997 | | O | | | 4 |
| 59998 | | Iteration cutoff | 2 |
| 59999 | | |
| 60000 | | Matchmaker Arf1-P84077-human.pdb, chain A (#23) with |
| 60001 | | fold_20240711_copi_golph3_model_0.cif C, chain C (#34.3), sequence alignment |
| 60002 | | score = 902.5 |
| 60003 | | RMSD between 157 pruned atom pairs is 0.695 angstroms; (across all 181 pairs: |
| 60004 | | 6.432) |
| 60005 | | |
| 60006 | | |
| 60007 | | > hide #34.3 models |
| 60008 | | |
| 60009 | | > show #34.3 models |
| 60010 | | |
| 60011 | | > show #!1 models |
| 60012 | | |
| 60013 | | > fitmap #34.3 inMap #1 |
| 60014 | | |
| 60015 | | Fit molecule fold_20240711_copi_golph3_model_0.cif C (#34.3) to map |
| 60016 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1457 atoms |
| 60017 | | average map value = 0.01001, steps = 68 |
| 60018 | | shifted from previous position = 0.227 |
| 60019 | | rotated from previous position = 2.22 degrees |
| 60020 | | atoms outside contour = 623, contour level = 0.0073613 |
| 60021 | | |
| 60022 | | Position of fold_20240711_copi_golph3_model_0.cif C (#34.3) relative to |
| 60023 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 60024 | | Matrix rotation and translation |
| 60025 | | -0.54968172 0.35481834 -0.75627637 335.66728281 |
| 60026 | | 0.52670407 0.84989962 0.01592060 166.85451496 |
| 60027 | | 0.64840792 -0.38958258 -0.65405855 271.13399774 |
| 60028 | | Axis -0.27545663 -0.95419623 0.11676126 |
| 60029 | | Axis point 75.48007854 0.00000000 209.04048356 |
| 60030 | | Rotation angle (degrees) 132.60345266 |
| 60031 | | Shift along axis -220.01578155 |
| 60032 | | |
| 60033 | | |
| 60034 | | > fitmap #34.3 inMap #1 |
| 60035 | | |
| 60036 | | Fit molecule fold_20240711_copi_golph3_model_0.cif C (#34.3) to map |
| 60037 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1457 atoms |
| 60038 | | average map value = 0.01001, steps = 84 |
| 60039 | | shifted from previous position = 0.0284 |
| 60040 | | rotated from previous position = 0.0625 degrees |
| 60041 | | atoms outside contour = 624, contour level = 0.0073613 |
| 60042 | | |
| 60043 | | Position of fold_20240711_copi_golph3_model_0.cif C (#34.3) relative to |
| 60044 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 60045 | | Matrix rotation and translation |
| 60046 | | -0.54962853 0.35489903 -0.75627717 335.67547785 |
| 60047 | | 0.52746175 0.84944131 0.01528258 166.85707183 |
| 60048 | | 0.64783684 -0.39050754 -0.65407285 271.22274561 |
| 60049 | | Axis -0.27572382 -0.95405890 0.11725188 |
| 60050 | | Axis point 75.43029175 0.00000000 209.10692899 |
| 60051 | | Rotation angle (degrees) 132.61977887 |
| 60052 | | Shift along axis -219.94382110 |
| 60053 | | |
| 60054 | | |
| 60055 | | > hide #!1 models |
| 60056 | | |
| 60057 | | > show #!1 models |
| 60058 | | |
| 60059 | | > show #!40 models |
| 60060 | | |
| 60061 | | > hide #!40 models |
| 60062 | | |
| 60063 | | > show #!40 models |
| 60064 | | |
| 60065 | | > hide #!40 models |
| 60066 | | |
| 60067 | | > show #!40 models |
| 60068 | | |
| 60069 | | > hide #!40 models |
| 60070 | | |
| 60071 | | > hide #34.1 models |
| 60072 | | |
| 60073 | | > show #34.1 models |
| 60074 | | |
| 60075 | | > hide #34.5 models |
| 60076 | | |
| 60077 | | > show #34.5 models |
| 60078 | | |
| 60079 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 60080 | | > dataset/Structure files/alphafold 3 |
| 60081 | | > /fold_20240711_copi_golph3/20240711_leaf_fitting_alphafold_withGolph3AF3_v1.cxs" |
| 60082 | | |
| 60083 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 60084 | | > dataset/Structure files/alphafold 3 |
| 60085 | | > /fold_20240711_copi_golph3/20240711_leaf_fitting_alphafold_withGolph3AF3_v2.cxs" |
| 60086 | | |
| 60087 | | ——— End of log from Sat Jul 13 09:14:12 2024 ——— |
| 60088 | | |
| 60089 | | opened ChimeraX session |
| 60090 | | |
| 60091 | | > hide #!1 models |
| 60092 | | |
| 60093 | | > show #!1 models |
| 60094 | | |
| 60095 | | > hide #34.1 models |
| 60096 | | |
| 60097 | | > show #34.1 models |
| 60098 | | |
| 60099 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 60100 | | QTBUG which explains how to reproduce. |
| 60101 | | |
| 60102 | | > hide #34.1 models |
| 60103 | | |
| 60104 | | > hide #34.2 models |
| 60105 | | |
| 60106 | | > show #34.2 models |
| 60107 | | |
| 60108 | | > hide #34.2 models |
| 60109 | | |
| 60110 | | > show #34.2 models |
| 60111 | | |
| 60112 | | > ui tool show "Fit in Map" |
| 60113 | | |
| 60114 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 60115 | | QTBUG which explains how to reproduce. |
| 60116 | | |
| 60117 | | > fitmap #34.2 inMap #1 |
| 60118 | | |
| 60119 | | Fit molecule fold_20240711_copi_golph3_model_0.cif B (#34.2) to map |
| 60120 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1457 atoms |
| 60121 | | average map value = 0.007695, steps = 64 |
| 60122 | | shifted from previous position = 0.248 |
| 60123 | | rotated from previous position = 2.71 degrees |
| 60124 | | atoms outside contour = 834, contour level = 0.0073613 |
| 60125 | | |
| 60126 | | Position of fold_20240711_copi_golph3_model_0.cif B (#34.2) relative to |
| 60127 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 60128 | | Matrix rotation and translation |
| 60129 | | 0.64432560 0.35698285 0.67631928 226.65167399 |
| 60130 | | -0.03018417 -0.87180479 0.48892261 253.33060500 |
| 60131 | | 0.76415537 -0.33543949 -0.55095092 256.82984099 |
| 60132 | | Axis -0.90096298 -0.09599795 -0.42314311 |
| 60133 | | Axis point 0.00000000 129.93033443 45.49616360 |
| 60134 | | Rotation angle (degrees) 152.77477596 |
| 60135 | | Shift along axis -337.19976560 |
| 60136 | | |
| 60137 | | |
| 60138 | | > fitmap #34.2 inMap #1 |
| 60139 | | |
| 60140 | | Fit molecule fold_20240711_copi_golph3_model_0.cif B (#34.2) to map |
| 60141 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1457 atoms |
| 60142 | | average map value = 0.007695, steps = 48 |
| 60143 | | shifted from previous position = 0.0361 |
| 60144 | | rotated from previous position = 0.046 degrees |
| 60145 | | atoms outside contour = 835, contour level = 0.0073613 |
| 60146 | | |
| 60147 | | Position of fold_20240711_copi_golph3_model_0.cif B (#34.2) relative to |
| 60148 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 60149 | | Matrix rotation and translation |
| 60150 | | 0.64411089 0.35714951 0.67643580 226.66372194 |
| 60151 | | -0.02956162 -0.87202532 0.48856725 253.34453506 |
| 60152 | | 0.76436070 -0.33468803 -0.55112308 256.83246742 |
| 60153 | | Axis -0.90091671 -0.09621926 -0.42319136 |
| 60154 | | Axis point 0.00000000 129.88083392 45.53649969 |
| 60155 | | Rotation angle (degrees) 152.81283600 |
| 60156 | | Shift along axis -337.27104026 |
| 60157 | | |
| 60158 | | |
| 60159 | | > fitmap #34.2 inMap #1 |
| 60160 | | |
| 60161 | | Fit molecule fold_20240711_copi_golph3_model_0.cif B (#34.2) to map |
| 60162 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1457 atoms |
| 60163 | | average map value = 0.007695, steps = 48 |
| 60164 | | shifted from previous position = 0.0337 |
| 60165 | | rotated from previous position = 0.0592 degrees |
| 60166 | | atoms outside contour = 833, contour level = 0.0073613 |
| 60167 | | |
| 60168 | | Position of fold_20240711_copi_golph3_model_0.cif B (#34.2) relative to |
| 60169 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 60170 | | Matrix rotation and translation |
| 60171 | | 0.64471671 0.35650419 0.67619903 226.68116161 |
| 60172 | | -0.03020175 -0.87201891 0.48853954 253.32157186 |
| 60173 | | 0.76382473 -0.33539200 -0.55143811 256.79928251 |
| 60174 | | Axis -0.90108643 -0.09583118 -0.42291799 |
| 60175 | | Axis point 0.00000000 129.94286445 45.52854398 |
| 60176 | | Rotation angle (degrees) 152.79420692 |
| 60177 | | Shift along axis -337.14046055 |
| 60178 | | |
| 60179 | | |
| 60180 | | > fitmap #34.2 inMap #1 |
| 60181 | | |
| 60182 | | Fit molecule fold_20240711_copi_golph3_model_0.cif B (#34.2) to map |
| 60183 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1457 atoms |
| 60184 | | average map value = 0.007695, steps = 60 |
| 60185 | | shifted from previous position = 0.00222 |
| 60186 | | rotated from previous position = 0.0189 degrees |
| 60187 | | atoms outside contour = 834, contour level = 0.0073613 |
| 60188 | | |
| 60189 | | Position of fold_20240711_copi_golph3_model_0.cif B (#34.2) relative to |
| 60190 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 60191 | | Matrix rotation and translation |
| 60192 | | 0.64456528 0.35676967 0.67620337 226.66616982 |
| 60193 | | -0.03015048 -0.87189761 0.48875914 253.32836692 |
| 60194 | | 0.76395454 -0.33542503 -0.55123816 256.81153638 |
| 60195 | | Axis -0.90103727 -0.09593375 -0.42299948 |
| 60196 | | Axis point 0.00000000 129.93692500 45.51545932 |
| 60197 | | Rotation angle (degrees) 152.78356795 |
| 60198 | | Shift along axis -337.16855269 |
| 60199 | | |
| 60200 | | |
| 60201 | | > fitmap #34.2 inMap #1 |
| 60202 | | |
| 60203 | | Fit molecule fold_20240711_copi_golph3_model_0.cif B (#34.2) to map |
| 60204 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1457 atoms |
| 60205 | | average map value = 0.007695, steps = 60 |
| 60206 | | shifted from previous position = 0.0325 |
| 60207 | | rotated from previous position = 0.0426 degrees |
| 60208 | | atoms outside contour = 833, contour level = 0.0073613 |
| 60209 | | |
| 60210 | | Position of fold_20240711_copi_golph3_model_0.cif B (#34.2) relative to |
| 60211 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 60212 | | Matrix rotation and translation |
| 60213 | | 0.64429202 0.35689581 0.67639720 226.67538323 |
| 60214 | | -0.02964787 -0.87211347 0.48840464 253.33933408 |
| 60215 | | 0.76420469 -0.33472894 -0.55131455 256.81639486 |
| 60216 | | Axis -0.90097264 -0.09611094 -0.42309691 |
| 60217 | | Axis point 0.00000000 129.89157565 45.54507875 |
| 60218 | | Rotation angle (degrees) 152.81901251 |
| 60219 | | Shift along axis -337.23522198 |
| 60220 | | |
| 60221 | | |
| 60222 | | > fitmap #34.2 inMap #1 |
| 60223 | | |
| 60224 | | Fit molecule fold_20240711_copi_golph3_model_0.cif B (#34.2) to map |
| 60225 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1457 atoms |
| 60226 | | average map value = 0.007695, steps = 60 |
| 60227 | | shifted from previous position = 0.0297 |
| 60228 | | rotated from previous position = 0.0339 degrees |
| 60229 | | atoms outside contour = 833, contour level = 0.0073613 |
| 60230 | | |
| 60231 | | Position of fold_20240711_copi_golph3_model_0.cif B (#34.2) relative to |
| 60232 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 60233 | | Matrix rotation and translation |
| 60234 | | 0.64458822 0.35669011 0.67622348 226.67106189 |
| 60235 | | -0.03003524 -0.87199842 0.48858637 253.33241227 |
| 60236 | | 0.76393973 -0.33524755 -0.55136663 256.80741557 |
| 60237 | | Axis -0.90104970 -0.09593767 -0.42297210 |
| 60238 | | Axis point 0.00000000 129.93127775 45.53111558 |
| 60239 | | Rotation angle (degrees) 152.79649635 |
| 60240 | | Shift along axis -337.16838500 |
| 60241 | | |
| 60242 | | |
| 60243 | | > fitmap #34.2 inMap #1 |
| 60244 | | |
| 60245 | | Fit molecule fold_20240711_copi_golph3_model_0.cif B (#34.2) to map |
| 60246 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1457 atoms |
| 60247 | | average map value = 0.007695, steps = 48 |
| 60248 | | shifted from previous position = 0.0372 |
| 60249 | | rotated from previous position = 0.0454 degrees |
| 60250 | | atoms outside contour = 833, contour level = 0.0073613 |
| 60251 | | |
| 60252 | | Position of fold_20240711_copi_golph3_model_0.cif B (#34.2) relative to |
| 60253 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 60254 | | Matrix rotation and translation |
| 60255 | | 0.64422597 0.35682412 0.67649793 226.68001862 |
| 60256 | | -0.02956760 -0.87222125 0.48821701 253.33910120 |
| 60257 | | 0.76426348 -0.33452450 -0.55135714 256.81707073 |
| 60258 | | Axis -0.90095922 -0.09610938 -0.42312583 |
| 60259 | | Axis point 0.00000000 129.88181796 45.55489965 |
| 60260 | | Rotation angle (degrees) 152.83258813 |
| 60261 | | Shift along axis -337.24365378 |
| 60262 | | |
| 60263 | | |
| 60264 | | > hide #34.2 models |
| 60265 | | |
| 60266 | | > show #34.2 models |
| 60267 | | |
| 60268 | | > hide #34.2 models |
| 60269 | | |
| 60270 | | > hide #34.3 models |
| 60271 | | |
| 60272 | | > show #34.3 models |
| 60273 | | |
| 60274 | | > fitmap #34.3 inMap #1 |
| 60275 | | |
| 60276 | | Fit molecule fold_20240711_copi_golph3_model_0.cif C (#34.3) to map |
| 60277 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1457 atoms |
| 60278 | | average map value = 0.01001, steps = 48 |
| 60279 | | shifted from previous position = 0.0376 |
| 60280 | | rotated from previous position = 0.0533 degrees |
| 60281 | | atoms outside contour = 623, contour level = 0.0073613 |
| 60282 | | |
| 60283 | | Position of fold_20240711_copi_golph3_model_0.cif C (#34.3) relative to |
| 60284 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 60285 | | Matrix rotation and translation |
| 60286 | | -0.54976862 0.35490996 -0.75617021 335.66204339 |
| 60287 | | 0.52683519 0.84981999 0.01583258 166.86602425 |
| 60288 | | 0.64822770 -0.38967282 -0.65418342 271.14642081 |
| 60289 | | Axis -0.27550830 -0.95417543 0.11680936 |
| 60290 | | Axis point 75.48209689 0.00000000 209.03180877 |
| 60291 | | Rotation angle (degrees) 132.61479508 |
| 60292 | | Shift along axis -220.02469949 |
| 60293 | | |
| 60294 | | |
| 60295 | | > fitmap #34.3 inMap #1 |
| 60296 | | |
| 60297 | | Fit molecule fold_20240711_copi_golph3_model_0.cif C (#34.3) to map |
| 60298 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1457 atoms |
| 60299 | | average map value = 0.01001, steps = 48 |
| 60300 | | shifted from previous position = 0.0359 |
| 60301 | | rotated from previous position = 0.0719 degrees |
| 60302 | | atoms outside contour = 625, contour level = 0.0073613 |
| 60303 | | |
| 60304 | | Position of fold_20240711_copi_golph3_model_0.cif C (#34.3) relative to |
| 60305 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 60306 | | Matrix rotation and translation |
| 60307 | | -0.54966200 0.35546795 -0.75598559 335.64620514 |
| 60308 | | 0.52641333 0.85005967 0.01695742 166.82818569 |
| 60309 | | 0.64866068 -0.38864005 -0.65436857 271.11571830 |
| 60310 | | Axis -0.27554310 -0.95424807 0.11613194 |
| 60311 | | Axis point 75.51025450 0.00000000 208.94253072 |
| 60312 | | Rotation angle (degrees) 132.60852240 |
| 60313 | | Shift along axis -220.19527612 |
| 60314 | | |
| 60315 | | |
| 60316 | | > fitmap #34.3 inMap #1 |
| 60317 | | |
| 60318 | | Fit molecule fold_20240711_copi_golph3_model_0.cif C (#34.3) to map |
| 60319 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1457 atoms |
| 60320 | | average map value = 0.01001, steps = 48 |
| 60321 | | shifted from previous position = 0.0259 |
| 60322 | | rotated from previous position = 0.0904 degrees |
| 60323 | | atoms outside contour = 624, contour level = 0.0073613 |
| 60324 | | |
| 60325 | | Position of fold_20240711_copi_golph3_model_0.cif C (#34.3) relative to |
| 60326 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 60327 | | Matrix rotation and translation |
| 60328 | | -0.54960161 0.35507513 -0.75621407 335.66385777 |
| 60329 | | 0.52722425 0.84958042 0.01573838 166.84432392 |
| 60330 | | 0.64805298 -0.39004456 -0.65413499 271.19599798 |
| 60331 | | Axis -0.27570103 -0.95410091 0.11696324 |
| 60332 | | Axis point 75.44482347 0.00000000 209.06469932 |
| 60333 | | Rotation angle (degrees) 132.61573417 |
| 60334 | | Shift along axis -220.00922798 |
| 60335 | | |
| 60336 | | |
| 60337 | | > hide #34.3 models |
| 60338 | | |
| 60339 | | > show #34.3 models |
| 60340 | | |
| 60341 | | > hide #34.3 models |
| 60342 | | |
| 60343 | | > show #34.2 models |
| 60344 | | |
| 60345 | | > show #34.3 models |
| 60346 | | |
| 60347 | | > hide #34.4 models |
| 60348 | | |
| 60349 | | > show #34.4 models |
| 60350 | | |
| 60351 | | > combine #34.4 |
| 60352 | | |
| 60353 | | > hide #38 models |
| 60354 | | |
| 60355 | | > show #38 models |
| 60356 | | |
| 60357 | | > combine #34.4 |
| 60358 | | |
| 60359 | | > hide #34.4 models |
| 60360 | | |
| 60361 | | > hide #34.9 models |
| 60362 | | |
| 60363 | | > hide #34.8 models |
| 60364 | | |
| 60365 | | > hide #34.7 models |
| 60366 | | |
| 60367 | | > hide #34.6 models |
| 60368 | | |
| 60369 | | > hide #34.5 models |
| 60370 | | |
| 60371 | | > hide #34.3 models |
| 60372 | | |
| 60373 | | > hide #34.2 models |
| 60374 | | |
| 60375 | | > hide #39 models |
| 60376 | | |
| 60377 | | > hide #!34 models |
| 60378 | | |
| 60379 | | > show #!34 models |
| 60380 | | |
| 60381 | | > hide #!1 models |
| 60382 | | |
| 60383 | | > hide #38 models |
| 60384 | | |
| 60385 | | > show #38 models |
| 60386 | | |
| 60387 | | > ui mousemode right select |
| 60388 | | |
| 60389 | | > show #!1 models |
| 60390 | | |
| 60391 | | > hide #!1 models |
| 60392 | | |
| 60393 | | Drag select of 119 residues |
| 60394 | | |
| 60395 | | > select clear |
| 60396 | | |
| 60397 | | Drag select of 302 residues |
| 60398 | | |
| 60399 | | > select up |
| 60400 | | |
| 60401 | | 2380 atoms, 2423 bonds, 306 residues, 1 model selected |
| 60402 | | |
| 60403 | | > delete sel |
| 60404 | | |
| 60405 | | Drag select of 2 residues |
| 60406 | | |
| 60407 | | > delete sel |
| 60408 | | |
| 60409 | | > select #38/D:592 |
| 60410 | | |
| 60411 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 60412 | | |
| 60413 | | > delete sel |
| 60414 | | |
| 60415 | | > show #!1 models |
| 60416 | | |
| 60417 | | > fitmap #34.3 inMap #1 |
| 60418 | | |
| 60419 | | Fit molecule fold_20240711_copi_golph3_model_0.cif C (#34.3) to map |
| 60420 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1457 atoms |
| 60421 | | average map value = 0.01001, steps = 48 |
| 60422 | | shifted from previous position = 0.00549 |
| 60423 | | rotated from previous position = 0.0119 degrees |
| 60424 | | atoms outside contour = 624, contour level = 0.0073613 |
| 60425 | | |
| 60426 | | Position of fold_20240711_copi_golph3_model_0.cif C (#34.3) relative to |
| 60427 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 60428 | | Matrix rotation and translation |
| 60429 | | -0.54954249 0.35524480 -0.75617735 335.65186462 |
| 60430 | | 0.52738295 0.84948061 0.01580877 166.84331501 |
| 60431 | | 0.64797398 -0.39010744 -0.65417574 271.20127937 |
| 60432 | | Axis -0.27580563 -0.95407086 0.11696174 |
| 60433 | | Axis point 75.43022439 0.00000000 209.05503117 |
| 60434 | | Rotation angle (degrees) 132.61890471 |
| 60435 | | Shift along axis -220.03484367 |
| 60436 | | |
| 60437 | | |
| 60438 | | > fitmap #38 inMap #1 |
| 60439 | | |
| 60440 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif D (#38) to map |
| 60441 | | relion_locres_filtered_20240326_GT.mrc (#1) using 4763 atoms |
| 60442 | | average map value = 0.008699, steps = 68 |
| 60443 | | shifted from previous position = 1.24 |
| 60444 | | rotated from previous position = 1.92 degrees |
| 60445 | | atoms outside contour = 2233, contour level = 0.0073613 |
| 60446 | | |
| 60447 | | Position of copy of fold_20240711_copi_golph3_model_0.cif D (#38) relative to |
| 60448 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 60449 | | Matrix rotation and translation |
| 60450 | | 0.57954569 0.37609347 0.72296646 229.39627935 |
| 60451 | | -0.04018189 -0.87287444 0.48628760 258.29327164 |
| 60452 | | 0.81394853 -0.31087604 -0.49075847 263.86207894 |
| 60453 | | Axis -0.88191705 -0.10065517 -0.46053323 |
| 60454 | | Axis point -0.00000000 129.97172556 41.82519965 |
| 60455 | | Rotation angle (degrees) 153.13118000 |
| 60456 | | Shift along axis -349.82429832 |
| 60457 | | |
| 60458 | | |
| 60459 | | > rename #38 20240711_copi_golph3_alpha_M1-T591.cif |
| 60460 | | |
| 60461 | | > hide #38 models |
| 60462 | | |
| 60463 | | > show #38 models |
| 60464 | | |
| 60465 | | > show #39 models |
| 60466 | | |
| 60467 | | > hide #!1 models |
| 60468 | | |
| 60469 | | > hide #38 models |
| 60470 | | |
| 60471 | | Drag select of 244 residues |
| 60472 | | |
| 60473 | | > select up |
| 60474 | | |
| 60475 | | 2232 atoms, 2269 bonds, 277 residues, 1 model selected |
| 60476 | | |
| 60477 | | > select clear |
| 60478 | | |
| 60479 | | Drag select of 312 residues |
| 60480 | | Drag select of 574 residues |
| 60481 | | |
| 60482 | | > select up |
| 60483 | | |
| 60484 | | 4763 atoms, 4880 bonds, 591 residues, 1 model selected |
| 60485 | | |
| 60486 | | > delete sel |
| 60487 | | |
| 60488 | | > show #!31 models |
| 60489 | | |
| 60490 | | > hide #!31 models |
| 60491 | | |
| 60492 | | > show #!1 models |
| 60493 | | |
| 60494 | | > fitmap #38 inMap #1 |
| 60495 | | |
| 60496 | | Fit molecule 20240711_copi_golph3_alpha_M1-T591.cif (#38) to map |
| 60497 | | relion_locres_filtered_20240326_GT.mrc (#1) using 4763 atoms |
| 60498 | | average map value = 0.008699, steps = 28 |
| 60499 | | shifted from previous position = 0.0348 |
| 60500 | | rotated from previous position = 0.0398 degrees |
| 60501 | | atoms outside contour = 2232, contour level = 0.0073613 |
| 60502 | | |
| 60503 | | Position of 20240711_copi_golph3_alpha_M1-T591.cif (#38) relative to |
| 60504 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 60505 | | Matrix rotation and translation |
| 60506 | | 0.57899303 0.37617952 0.72336439 229.39426216 |
| 60507 | | -0.04035202 -0.87289350 0.48623930 258.30795598 |
| 60508 | | 0.81433334 -0.31071838 -0.49021965 263.89271024 |
| 60509 | | Axis -0.88175253 -0.10064788 -0.46084974 |
| 60510 | | Axis point 0.00000000 129.96471515 41.78394361 |
| 60511 | | Rotation angle (degrees) 153.13326520 |
| 60512 | | Shift along axis -349.88200523 |
| 60513 | | |
| 60514 | | |
| 60515 | | > fitmap #39 inMap #1 |
| 60516 | | |
| 60517 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif D (#39) to map |
| 60518 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2403 atoms |
| 60519 | | average map value = 0.007323, steps = 68 |
| 60520 | | shifted from previous position = 2.94 |
| 60521 | | rotated from previous position = 3.87 degrees |
| 60522 | | atoms outside contour = 1477, contour level = 0.0073613 |
| 60523 | | |
| 60524 | | Position of copy of fold_20240711_copi_golph3_model_0.cif D (#39) relative to |
| 60525 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 60526 | | Matrix rotation and translation |
| 60527 | | 0.58533449 0.32440303 0.74306541 225.71515771 |
| 60528 | | -0.13492540 -0.86471675 0.48379755 254.86013275 |
| 60529 | | 0.79948650 -0.38344179 -0.46237833 264.73941481 |
| 60530 | | Axis -0.88224604 -0.05739740 -0.46727664 |
| 60531 | | Axis point 0.00000000 136.02553898 37.53416349 |
| 60532 | | Rotation angle (degrees) 150.56109739 |
| 60533 | | Shift along axis -337.47115908 |
| 60534 | | |
| 60535 | | |
| 60536 | | > fitmap #39 inMap #1 |
| 60537 | | |
| 60538 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif D (#39) to map |
| 60539 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2403 atoms |
| 60540 | | average map value = 0.007323, steps = 44 |
| 60541 | | shifted from previous position = 0.017 |
| 60542 | | rotated from previous position = 0.048 degrees |
| 60543 | | atoms outside contour = 1476, contour level = 0.0073613 |
| 60544 | | |
| 60545 | | Position of copy of fold_20240711_copi_golph3_model_0.cif D (#39) relative to |
| 60546 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 60547 | | Matrix rotation and translation |
| 60548 | | 0.58552841 0.32361096 0.74325799 225.72064463 |
| 60549 | | -0.13536426 -0.86496102 0.48323798 254.83332258 |
| 60550 | | 0.79927029 -0.38356014 -0.46265389 264.72247172 |
| 60551 | | Axis -0.88231571 -0.05701505 -0.46719189 |
| 60552 | | Axis point 0.00000000 136.05872535 37.55009384 |
| 60553 | | Rotation angle (degrees) 150.58009941 |
| 60554 | | Shift along axis -337.36239934 |
| 60555 | | |
| 60556 | | |
| 60557 | | > hide #!1 models |
| 60558 | | |
| 60559 | | > rename #39 20240711_copi_golph3_alpha_I592-G900.cif |
| 60560 | | |
| 60561 | | > hide #39 models |
| 60562 | | |
| 60563 | | > show #34.6 models |
| 60564 | | |
| 60565 | | > show #!1 models |
| 60566 | | |
| 60567 | | > fitmap #34.6 inMap #1 |
| 60568 | | |
| 60569 | | Fit molecule fold_20240711_copi_golph3_model_0.cif F (#34.6) to map |
| 60570 | | relion_locres_filtered_20240326_GT.mrc (#1) using 7214 atoms |
| 60571 | | average map value = 0.008416, steps = 108 |
| 60572 | | shifted from previous position = 0.0102 |
| 60573 | | rotated from previous position = 0.00668 degrees |
| 60574 | | atoms outside contour = 3515, contour level = 0.0073613 |
| 60575 | | |
| 60576 | | Position of fold_20240711_copi_golph3_model_0.cif F (#34.6) relative to |
| 60577 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 60578 | | Matrix rotation and translation |
| 60579 | | 0.58320062 0.35669686 0.72982490 229.42488060 |
| 60580 | | -0.01510074 -0.89352030 0.44876880 249.27477617 |
| 60581 | | 0.81218779 -0.27274314 -0.51571521 258.76540818 |
| 60582 | | Axis -0.88437810 -0.10095458 -0.45572310 |
| 60583 | | Axis point 0.00000000 123.72961750 44.43035142 |
| 60584 | | Rotation angle (degrees) 155.92572855 |
| 60585 | | Shift along axis -345.98914492 |
| 60586 | | |
| 60587 | | |
| 60588 | | > hide #34.6 models |
| 60589 | | |
| 60590 | | > show #34.6 models |
| 60591 | | |
| 60592 | | > hide #!34 models |
| 60593 | | |
| 60594 | | > combine #34.6 |
| 60595 | | |
| 60596 | | [Repeated 1 time(s)] |
| 60597 | | |
| 60598 | | > hide #34.6 models |
| 60599 | | |
| 60600 | | > hide #42 models |
| 60601 | | |
| 60602 | | > hide #!1 models |
| 60603 | | |
| 60604 | | Drag select of 111 residues |
| 60605 | | |
| 60606 | | > select clear |
| 60607 | | |
| 60608 | | Drag select of 253 residues |
| 60609 | | |
| 60610 | | > select up |
| 60611 | | |
| 60612 | | 1997 atoms, 2033 bonds, 254 residues, 1 model selected |
| 60613 | | |
| 60614 | | > delete sel |
| 60615 | | |
| 60616 | | Drag select of 64 residues |
| 60617 | | |
| 60618 | | > delete sel |
| 60619 | | |
| 60620 | | > select #41/F:587 |
| 60621 | | |
| 60622 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 60623 | | |
| 60624 | | > delete sel |
| 60625 | | |
| 60626 | | > show #!1 models |
| 60627 | | |
| 60628 | | > fitmap #41 inMap #1 |
| 60629 | | |
| 60630 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif F (#41) to map |
| 60631 | | relion_locres_filtered_20240326_GT.mrc (#1) using 4686 atoms |
| 60632 | | average map value = 0.01004, steps = 64 |
| 60633 | | shifted from previous position = 0.573 |
| 60634 | | rotated from previous position = 1.59 degrees |
| 60635 | | atoms outside contour = 1755, contour level = 0.0073613 |
| 60636 | | |
| 60637 | | Position of copy of fold_20240711_copi_golph3_model_0.cif F (#41) relative to |
| 60638 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 60639 | | Matrix rotation and translation |
| 60640 | | 0.59294693 0.33291104 0.73320132 230.49160519 |
| 60641 | | -0.03655337 -0.89846921 0.43751220 249.48414209 |
| 60642 | | 0.80441146 -0.28622249 -0.52057554 258.88679735 |
| 60643 | | Axis -0.88725580 -0.08729940 -0.45294144 |
| 60644 | | Axis point 0.00000000 125.81112779 44.24040475 |
| 60645 | | Rotation angle (degrees) 155.93014878 |
| 60646 | | Shift along axis -343.54539036 |
| 60647 | | |
| 60648 | | |
| 60649 | | > fitmap #41 inMap #1 |
| 60650 | | |
| 60651 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif F (#41) to map |
| 60652 | | relion_locres_filtered_20240326_GT.mrc (#1) using 4686 atoms |
| 60653 | | average map value = 0.01004, steps = 28 |
| 60654 | | shifted from previous position = 0.0225 |
| 60655 | | rotated from previous position = 0.0138 degrees |
| 60656 | | atoms outside contour = 1751, contour level = 0.0073613 |
| 60657 | | |
| 60658 | | Position of copy of fold_20240711_copi_golph3_model_0.cif F (#41) relative to |
| 60659 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 60660 | | Matrix rotation and translation |
| 60661 | | 0.59310238 0.33298355 0.73304264 230.46604751 |
| 60662 | | -0.03651740 -0.89840571 0.43764559 249.47016786 |
| 60663 | | 0.80429848 -0.28633746 -0.52068687 258.88830934 |
| 60664 | | Axis -0.88729822 -0.08732963 -0.45285251 |
| 60665 | | Axis point 0.00000000 125.81086103 44.25740174 |
| 60666 | | Rotation angle (degrees) 155.92258977 |
| 60667 | | Shift along axis -343.51647395 |
| 60668 | | |
| 60669 | | |
| 60670 | | > hide #!1 models |
| 60671 | | |
| 60672 | | > rename #41 20240711_copi_golph3_betaprime_M1-S586.cif |
| 60673 | | |
| 60674 | | > fitmap #41 inMap #1 |
| 60675 | | |
| 60676 | | Fit molecule 20240711_copi_golph3_betaprime_M1-S586.cif (#41) to map |
| 60677 | | relion_locres_filtered_20240326_GT.mrc (#1) using 4686 atoms |
| 60678 | | average map value = 0.01004, steps = 44 |
| 60679 | | shifted from previous position = 0.008 |
| 60680 | | rotated from previous position = 0.00435 degrees |
| 60681 | | atoms outside contour = 1755, contour level = 0.0073613 |
| 60682 | | |
| 60683 | | Position of 20240711_copi_golph3_betaprime_M1-S586.cif (#41) relative to |
| 60684 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 60685 | | Matrix rotation and translation |
| 60686 | | 0.59312402 0.33303985 0.73299956 230.45895672 |
| 60687 | | -0.03648900 -0.89837760 0.43770565 249.47227469 |
| 60688 | | 0.80428381 -0.28636016 -0.52069705 258.89564102 |
| 60689 | | Axis -0.88730336 -0.08735498 -0.45283756 |
| 60690 | | Axis point 0.00000000 125.81189319 44.26297894 |
| 60691 | | Rotation angle (degrees) 155.91981153 |
| 60692 | | Shift along axis -343.51732333 |
| 60693 | | |
| 60694 | | |
| 60695 | | > hide #41 models |
| 60696 | | |
| 60697 | | > show #42 models |
| 60698 | | |
| 60699 | | Drag select of 251 residues |
| 60700 | | |
| 60701 | | > select up |
| 60702 | | |
| 60703 | | 2195 atoms, 2246 bonds, 274 residues, 1 model selected |
| 60704 | | |
| 60705 | | > delete sel |
| 60706 | | |
| 60707 | | Drag select of 125 residues, 4 pseudobonds |
| 60708 | | Drag select of 222 residues, 4 pseudobonds |
| 60709 | | |
| 60710 | | > select up |
| 60711 | | |
| 60712 | | 2116 atoms, 2152 bonds, 4 pseudobonds, 264 residues, 2 models selected |
| 60713 | | |
| 60714 | | > delete sel |
| 60715 | | |
| 60716 | | Drag select of 26 residues, 3 pseudobonds |
| 60717 | | |
| 60718 | | > delete sel |
| 60719 | | |
| 60720 | | Drag select of 14 residues, 2 pseudobonds |
| 60721 | | |
| 60722 | | > delete sel |
| 60723 | | |
| 60724 | | Drag select of 2 residues, 1 pseudobonds |
| 60725 | | |
| 60726 | | > delete sel |
| 60727 | | |
| 60728 | | Drag select of 5 residues, 2 pseudobonds |
| 60729 | | |
| 60730 | | > select up |
| 60731 | | |
| 60732 | | 48 atoms, 47 bonds, 2 pseudobonds, 6 residues, 2 models selected |
| 60733 | | |
| 60734 | | > delete sel |
| 60735 | | |
| 60736 | | Undo failed, probably because structures have been modified. |
| 60737 | | |
| 60738 | | > close #42 |
| 60739 | | |
| 60740 | | > combine #34.6 |
| 60741 | | |
| 60742 | | Drag select of 302 residues |
| 60743 | | |
| 60744 | | > delete sel |
| 60745 | | |
| 60746 | | Drag select of 270 residues |
| 60747 | | |
| 60748 | | > select up |
| 60749 | | |
| 60750 | | 2254 atoms, 2303 bonds, 282 residues, 1 model selected |
| 60751 | | Drag select of 285 residues |
| 60752 | | |
| 60753 | | > select clear |
| 60754 | | |
| 60755 | | Drag select of 285 residues |
| 60756 | | |
| 60757 | | > select clear |
| 60758 | | |
| 60759 | | Drag select of 283 residues |
| 60760 | | |
| 60761 | | > select up |
| 60762 | | |
| 60763 | | 2262 atoms, 2312 bonds, 284 residues, 1 model selected |
| 60764 | | |
| 60765 | | > delete sel |
| 60766 | | |
| 60767 | | > fitmap #42 inMap #1 |
| 60768 | | |
| 60769 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif F (#42) to map |
| 60770 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2528 atoms |
| 60771 | | average map value = 0.007568, steps = 84 |
| 60772 | | shifted from previous position = 5.8 |
| 60773 | | rotated from previous position = 6.74 degrees |
| 60774 | | atoms outside contour = 1450, contour level = 0.0073613 |
| 60775 | | |
| 60776 | | Position of copy of fold_20240711_copi_golph3_model_0.cif F (#42) relative to |
| 60777 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 60778 | | Matrix rotation and translation |
| 60779 | | 0.59124018 0.34103418 0.73084249 226.71930924 |
| 60780 | | -0.11694607 -0.86036468 0.49608088 254.82904919 |
| 60781 | | 0.79797160 -0.37877210 -0.46879956 265.13169213 |
| 60782 | | Axis -0.88390636 -0.06782379 -0.46271965 |
| 60783 | | Axis point 0.00000000 134.83865586 38.51143168 |
| 60784 | | Rotation angle (degrees) 150.33824374 |
| 60785 | | Shift along axis -340.36375630 |
| 60786 | | |
| 60787 | | |
| 60788 | | > show #!1 models |
| 60789 | | |
| 60790 | | > show #39 models |
| 60791 | | |
| 60792 | | > hide #42 models |
| 60793 | | |
| 60794 | | > hide #39 models |
| 60795 | | |
| 60796 | | > rename #42 "20240711_copi_golph3_betaprime_L587-D905.cif F" |
| 60797 | | |
| 60798 | | > rename #42 20240711_copi_golph3_betaprime_L587-D905.cif |
| 60799 | | |
| 60800 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 60801 | | > dataset/Chimera sessions/20240715_leaf_fitting_AF3_only.cxs" |
| 60802 | | |
| 60803 | | > show #34.5 models |
| 60804 | | |
| 60805 | | > combine #34.5 |
| 60806 | | |
| 60807 | | [Repeated 1 time(s)] |
| 60808 | | |
| 60809 | | > hide #34.5 models |
| 60810 | | |
| 60811 | | > fitmap #43 inMap #1 |
| 60812 | | |
| 60813 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#43) to map |
| 60814 | | relion_locres_filtered_20240326_GT.mrc (#1) using 7501 atoms |
| 60815 | | average map value = 0.008391, steps = 60 |
| 60816 | | shifted from previous position = 0.0202 |
| 60817 | | rotated from previous position = 0.0157 degrees |
| 60818 | | atoms outside contour = 4035, contour level = 0.0073613 |
| 60819 | | |
| 60820 | | Position of copy of fold_20240711_copi_golph3_model_0.cif E (#43) relative to |
| 60821 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 60822 | | Matrix rotation and translation |
| 60823 | | 0.58728190 0.35087602 0.72937370 227.26547074 |
| 60824 | | -0.08402593 -0.86984861 0.48611011 251.91658958 |
| 60825 | | 0.80500908 -0.34676997 -0.48136366 262.66211508 |
| 60826 | | Axis -0.88357135 -0.08023875 -0.46137123 |
| 60827 | | Axis point 0.00000000 130.48829569 40.18584814 |
| 60828 | | Rotation angle (degrees) 151.88033864 |
| 60829 | | Shift along axis -342.20347384 |
| 60830 | | |
| 60831 | | |
| 60832 | | > fitmap #44 inMap #1 |
| 60833 | | |
| 60834 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#44) to map |
| 60835 | | relion_locres_filtered_20240326_GT.mrc (#1) using 7501 atoms |
| 60836 | | average map value = 0.008391, steps = 60 |
| 60837 | | shifted from previous position = 0.0202 |
| 60838 | | rotated from previous position = 0.0157 degrees |
| 60839 | | atoms outside contour = 4035, contour level = 0.0073613 |
| 60840 | | |
| 60841 | | Position of copy of fold_20240711_copi_golph3_model_0.cif E (#44) relative to |
| 60842 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 60843 | | Matrix rotation and translation |
| 60844 | | 0.58728190 0.35087602 0.72937370 227.26547074 |
| 60845 | | -0.08402593 -0.86984861 0.48611011 251.91658958 |
| 60846 | | 0.80500908 -0.34676997 -0.48136366 262.66211508 |
| 60847 | | Axis -0.88357135 -0.08023875 -0.46137123 |
| 60848 | | Axis point 0.00000000 130.48829569 40.18584814 |
| 60849 | | Rotation angle (degrees) 151.88033864 |
| 60850 | | Shift along axis -342.20347384 |
| 60851 | | |
| 60852 | | |
| 60853 | | > fitmap #44 inMap #1 |
| 60854 | | |
| 60855 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#44) to map |
| 60856 | | relion_locres_filtered_20240326_GT.mrc (#1) using 7501 atoms |
| 60857 | | average map value = 0.008391, steps = 80 |
| 60858 | | shifted from previous position = 0.0251 |
| 60859 | | rotated from previous position = 0.0158 degrees |
| 60860 | | atoms outside contour = 4039, contour level = 0.0073613 |
| 60861 | | |
| 60862 | | Position of copy of fold_20240711_copi_golph3_model_0.cif E (#44) relative to |
| 60863 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 60864 | | Matrix rotation and translation |
| 60865 | | 0.58724649 0.35080437 0.72943667 227.28192342 |
| 60866 | | -0.08428861 -0.86979335 0.48616351 251.91497901 |
| 60867 | | 0.80500745 -0.34698102 -0.48121428 262.64428639 |
| 60868 | | Axis -0.88355512 -0.08014329 -0.46141889 |
| 60869 | | Axis point 0.00000000 130.50051036 40.14821271 |
| 60870 | | Rotation angle (degrees) 151.87005385 |
| 60871 | | Shift along axis -342.19444001 |
| 60872 | | |
| 60873 | | |
| 60874 | | > hide #!1 models |
| 60875 | | |
| 60876 | | > hide #44 models |
| 60877 | | |
| 60878 | | > show #!1 models |
| 60879 | | |
| 60880 | | > hide #!1 models |
| 60881 | | |
| 60882 | | > show #!1 models |
| 60883 | | |
| 60884 | | > hide #!1 models |
| 60885 | | |
| 60886 | | Drag select of 121 residues |
| 60887 | | |
| 60888 | | > select up |
| 60889 | | |
| 60890 | | 1052 atoms, 1068 bonds, 132 residues, 1 model selected |
| 60891 | | |
| 60892 | | > delete sel |
| 60893 | | |
| 60894 | | Drag select of 88 residues, 1 pseudobonds |
| 60895 | | |
| 60896 | | > delete sel |
| 60897 | | |
| 60898 | | > fitmap #43 inMap #1 |
| 60899 | | |
| 60900 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#43) to map |
| 60901 | | relion_locres_filtered_20240326_GT.mrc (#1) using 5728 atoms |
| 60902 | | average map value = 0.008372, steps = 76 |
| 60903 | | shifted from previous position = 1.66 |
| 60904 | | rotated from previous position = 2.84 degrees |
| 60905 | | atoms outside contour = 2966, contour level = 0.0073613 |
| 60906 | | |
| 60907 | | Position of copy of fold_20240711_copi_golph3_model_0.cif E (#43) relative to |
| 60908 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 60909 | | Matrix rotation and translation |
| 60910 | | 0.57378754 0.34816301 0.74131665 228.20919476 |
| 60911 | | -0.12686471 -0.85643528 0.50042378 253.80233981 |
| 60912 | | 0.80911878 -0.38118385 -0.44724229 263.79645345 |
| 60913 | | Axis -0.87832859 -0.06754995 -0.47326091 |
| 60914 | | Axis point 0.00000000 133.71094787 35.07949807 |
| 60915 | | Rotation angle (degrees) 149.87642729 |
| 60916 | | Shift along axis -342.43154616 |
| 60917 | | |
| 60918 | | |
| 60919 | | > show #!1 models |
| 60920 | | |
| 60921 | | > fitmap #43 inMap #1 |
| 60922 | | |
| 60923 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#43) to map |
| 60924 | | relion_locres_filtered_20240326_GT.mrc (#1) using 5728 atoms |
| 60925 | | average map value = 0.008372, steps = 76 |
| 60926 | | shifted from previous position = 1.66 |
| 60927 | | rotated from previous position = 2.84 degrees |
| 60928 | | atoms outside contour = 2966, contour level = 0.0073613 |
| 60929 | | |
| 60930 | | Position of copy of fold_20240711_copi_golph3_model_0.cif E (#43) relative to |
| 60931 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 60932 | | Matrix rotation and translation |
| 60933 | | 0.57378754 0.34816301 0.74131665 228.20919476 |
| 60934 | | -0.12686471 -0.85643528 0.50042378 253.80233981 |
| 60935 | | 0.80911878 -0.38118385 -0.44724229 263.79645345 |
| 60936 | | Axis -0.87832859 -0.06754995 -0.47326091 |
| 60937 | | Axis point 0.00000000 133.71094787 35.07949807 |
| 60938 | | Rotation angle (degrees) 149.87642729 |
| 60939 | | Shift along axis -342.43154616 |
| 60940 | | |
| 60941 | | |
| 60942 | | > fitmap #43 inMap #1 |
| 60943 | | |
| 60944 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#43) to map |
| 60945 | | relion_locres_filtered_20240326_GT.mrc (#1) using 5728 atoms |
| 60946 | | average map value = 0.008372, steps = 76 |
| 60947 | | shifted from previous position = 1.66 |
| 60948 | | rotated from previous position = 2.84 degrees |
| 60949 | | atoms outside contour = 2966, contour level = 0.0073613 |
| 60950 | | |
| 60951 | | Position of copy of fold_20240711_copi_golph3_model_0.cif E (#43) relative to |
| 60952 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 60953 | | Matrix rotation and translation |
| 60954 | | 0.57378754 0.34816301 0.74131665 228.20919476 |
| 60955 | | -0.12686471 -0.85643528 0.50042378 253.80233981 |
| 60956 | | 0.80911878 -0.38118385 -0.44724229 263.79645345 |
| 60957 | | Axis -0.87832859 -0.06754995 -0.47326091 |
| 60958 | | Axis point 0.00000000 133.71094787 35.07949807 |
| 60959 | | Rotation angle (degrees) 149.87642729 |
| 60960 | | Shift along axis -342.43154616 |
| 60961 | | |
| 60962 | | |
| 60963 | | > hide #!1 models |
| 60964 | | |
| 60965 | | Drag select of 28 residues |
| 60966 | | |
| 60967 | | > select up |
| 60968 | | |
| 60969 | | 283 atoms, 287 bonds, 34 residues, 1 model selected |
| 60970 | | |
| 60971 | | > delete sel |
| 60972 | | |
| 60973 | | Drag select of 63 residues |
| 60974 | | |
| 60975 | | > select up |
| 60976 | | |
| 60977 | | 676 atoms, 679 bonds, 88 residues, 1 model selected |
| 60978 | | |
| 60979 | | > delete sel |
| 60980 | | |
| 60981 | | Drag select of 9 residues, 1 pseudobonds |
| 60982 | | |
| 60983 | | > select up |
| 60984 | | |
| 60985 | | 278 atoms, 279 bonds, 1 pseudobond, 34 residues, 2 models selected |
| 60986 | | Drag select of 59 residues, 2 pseudobonds |
| 60987 | | |
| 60988 | | > select up |
| 60989 | | |
| 60990 | | 678 atoms, 684 bonds, 2 pseudobonds, 85 residues, 2 models selected |
| 60991 | | |
| 60992 | | > delete sel |
| 60993 | | |
| 60994 | | Drag select of 3 residues |
| 60995 | | |
| 60996 | | > delete sel |
| 60997 | | |
| 60998 | | > show #!1 models |
| 60999 | | |
| 61000 | | > fitmap #43 inMap #1 |
| 61001 | | |
| 61002 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#43) to map |
| 61003 | | relion_locres_filtered_20240326_GT.mrc (#1) using 4069 atoms |
| 61004 | | average map value = 0.008155, steps = 68 |
| 61005 | | shifted from previous position = 1.4 |
| 61006 | | rotated from previous position = 0.816 degrees |
| 61007 | | atoms outside contour = 2109, contour level = 0.0073613 |
| 61008 | | |
| 61009 | | Position of copy of fold_20240711_copi_golph3_model_0.cif E (#43) relative to |
| 61010 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 61011 | | Matrix rotation and translation |
| 61012 | | 0.57410381 0.34312327 0.74341861 228.36549375 |
| 61013 | | -0.14054360 -0.85318371 0.50231968 255.37589611 |
| 61014 | | 0.80663022 -0.39286637 -0.44159224 264.01600817 |
| 61015 | | Axis -0.87810302 -0.06200532 -0.47443695 |
| 61016 | | Axis point 0.00000000 135.52919165 33.77725227 |
| 61017 | | Rotation angle (degrees) 149.35433730 |
| 61018 | | Shift along axis -341.62204503 |
| 61019 | | |
| 61020 | | |
| 61021 | | > show #34.5 models |
| 61022 | | |
| 61023 | | > hide #34.5 models |
| 61024 | | |
| 61025 | | > show #34.5 models |
| 61026 | | |
| 61027 | | > hide #34.5 models |
| 61028 | | |
| 61029 | | > show #34.5 models |
| 61030 | | |
| 61031 | | > hide #34.5 models |
| 61032 | | |
| 61033 | | > show #!16 models |
| 61034 | | |
| 61035 | | > hide #!16 models |
| 61036 | | |
| 61037 | | > show #!16 models |
| 61038 | | |
| 61039 | | > hide #!16 models |
| 61040 | | |
| 61041 | | > show #44 models |
| 61042 | | |
| 61043 | | > hide #!43 models |
| 61044 | | |
| 61045 | | > hide #44 models |
| 61046 | | |
| 61047 | | > show #!43 models |
| 61048 | | |
| 61049 | | > hide #!1 models |
| 61050 | | |
| 61051 | | Drag select of 211 residues |
| 61052 | | |
| 61053 | | > select up |
| 61054 | | |
| 61055 | | 1801 atoms, 1824 bonds, 229 residues, 1 model selected |
| 61056 | | |
| 61057 | | > delete sel |
| 61058 | | |
| 61059 | | > show #!1 models |
| 61060 | | |
| 61061 | | > fitmap #43 inMap #1 |
| 61062 | | |
| 61063 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#43) to map |
| 61064 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2268 atoms |
| 61065 | | average map value = 0.008066, steps = 88 |
| 61066 | | shifted from previous position = 0.913 |
| 61067 | | rotated from previous position = 3.83 degrees |
| 61068 | | atoms outside contour = 1095, contour level = 0.0073613 |
| 61069 | | |
| 61070 | | Position of copy of fold_20240711_copi_golph3_model_0.cif E (#43) relative to |
| 61071 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 61072 | | Matrix rotation and translation |
| 61073 | | 0.54911717 0.39741492 0.73520862 228.50766833 |
| 61074 | | -0.09014896 -0.84640556 0.52485312 256.86574974 |
| 61075 | | 0.83086912 -0.35448415 -0.42894929 265.00653117 |
| 61076 | | Axis -0.87062947 -0.09471321 -0.48273568 |
| 61077 | | Axis point 0.00000000 130.86457817 34.34641142 |
| 61078 | | Rotation angle (degrees) 149.66859034 |
| 61079 | | Shift along axis -351.20219705 |
| 61080 | | |
| 61081 | | |
| 61082 | | > hide #!1 models |
| 61083 | | |
| 61084 | | Drag select of 51 residues |
| 61085 | | |
| 61086 | | > delete sel |
| 61087 | | |
| 61088 | | > show #!1 models |
| 61089 | | |
| 61090 | | > fitmap #43 inMap #1 |
| 61091 | | |
| 61092 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#43) to map |
| 61093 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1872 atoms |
| 61094 | | average map value = 0.008979, steps = 52 |
| 61095 | | shifted from previous position = 0.229 |
| 61096 | | rotated from previous position = 2.06 degrees |
| 61097 | | atoms outside contour = 765, contour level = 0.0073613 |
| 61098 | | |
| 61099 | | Position of copy of fold_20240711_copi_golph3_model_0.cif E (#43) relative to |
| 61100 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 61101 | | Matrix rotation and translation |
| 61102 | | 0.55235724 0.42748288 0.71565345 229.23148406 |
| 61103 | | -0.07113425 -0.83119930 0.55140515 257.71360793 |
| 61104 | | 0.83056691 -0.35548010 -0.42871028 265.08311295 |
| 61105 | | Axis -0.87093274 -0.11035784 -0.47884999 |
| 61106 | | Axis point 0.00000000 129.66425331 34.28845360 |
| 61107 | | Rotation angle (degrees) 148.62479341 |
| 61108 | | Shift along axis -355.02096685 |
| 61109 | | |
| 61110 | | |
| 61111 | | > fitmap #43 inMap #1 |
| 61112 | | |
| 61113 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#43) to map |
| 61114 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1872 atoms |
| 61115 | | average map value = 0.008979, steps = 48 |
| 61116 | | shifted from previous position = 0.00726 |
| 61117 | | rotated from previous position = 0.0577 degrees |
| 61118 | | atoms outside contour = 758, contour level = 0.0073613 |
| 61119 | | |
| 61120 | | Position of copy of fold_20240711_copi_golph3_model_0.cif E (#43) relative to |
| 61121 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 61122 | | Matrix rotation and translation |
| 61123 | | 0.55317939 0.42734298 0.71510178 229.23855785 |
| 61124 | | -0.07089502 -0.83113817 0.55152810 257.71998380 |
| 61125 | | 0.83004004 -0.35579113 -0.42947201 265.06819269 |
| 61126 | | Axis -0.87118278 -0.11036053 -0.47839432 |
| 61127 | | Axis point 0.00000000 129.69838305 34.35730714 |
| 61128 | | Rotation angle (degrees) 148.61810567 |
| 61129 | | Shift along axis -354.95791509 |
| 61130 | | |
| 61131 | | |
| 61132 | | > hide #!1 models |
| 61133 | | |
| 61134 | | > show #!1 models |
| 61135 | | |
| 61136 | | > fitmap #43 inMap #1 |
| 61137 | | |
| 61138 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#43) to map |
| 61139 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1872 atoms |
| 61140 | | average map value = 0.008979, steps = 60 |
| 61141 | | shifted from previous position = 0.0302 |
| 61142 | | rotated from previous position = 0.0163 degrees |
| 61143 | | atoms outside contour = 756, contour level = 0.0073613 |
| 61144 | | |
| 61145 | | Position of copy of fold_20240711_copi_golph3_model_0.cif E (#43) relative to |
| 61146 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 61147 | | Matrix rotation and translation |
| 61148 | | 0.55302467 0.42752497 0.71511266 229.26901259 |
| 61149 | | -0.07069298 -0.83113550 0.55155805 257.73333941 |
| 61150 | | 0.83016035 -0.35557865 -0.42941543 265.07013834 |
| 61151 | | Axis -0.87113844 -0.11048221 -0.47844697 |
| 61152 | | Axis point 0.00000000 129.67681632 34.35014664 |
| 61153 | | Rotation angle (degrees) 148.62335798 |
| 61154 | | Shift along axis -355.02200355 |
| 61155 | | |
| 61156 | | |
| 61157 | | > fitmap #43 inMap #1 |
| 61158 | | |
| 61159 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#43) to map |
| 61160 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1872 atoms |
| 61161 | | average map value = 0.008979, steps = 44 |
| 61162 | | shifted from previous position = 0.00905 |
| 61163 | | rotated from previous position = 0.0364 degrees |
| 61164 | | atoms outside contour = 761, contour level = 0.0073613 |
| 61165 | | |
| 61166 | | Position of copy of fold_20240711_copi_golph3_model_0.cif E (#43) relative to |
| 61167 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 61168 | | Matrix rotation and translation |
| 61169 | | 0.55251064 0.42761388 0.71545675 229.26676177 |
| 61170 | | -0.07087587 -0.83115833 0.55150017 257.73181508 |
| 61171 | | 0.83048697 -0.35541834 -0.42891632 265.07188309 |
| 61172 | | Axis -0.87098068 -0.11047200 -0.47873645 |
| 61173 | | Axis point 0.00000000 129.65750307 34.29851952 |
| 61174 | | Rotation angle (degrees) 148.62543510 |
| 61175 | | Shift along axis -355.05864186 |
| 61176 | | |
| 61177 | | |
| 61178 | | > hide #!43 models |
| 61179 | | |
| 61180 | | > show #44 models |
| 61181 | | |
| 61182 | | > hide #!1 models |
| 61183 | | |
| 61184 | | Drag select of 123 residues |
| 61185 | | |
| 61186 | | > select up |
| 61187 | | |
| 61188 | | 1033 atoms, 1050 bonds, 133 residues, 1 model selected |
| 61189 | | |
| 61190 | | > delete sel |
| 61191 | | |
| 61192 | | Drag select of 107 residues, 1 pseudobonds |
| 61193 | | |
| 61194 | | > select up |
| 61195 | | |
| 61196 | | 934 atoms, 947 bonds, 1 pseudobond, 123 residues, 2 models selected |
| 61197 | | |
| 61198 | | > select clear |
| 61199 | | |
| 61200 | | Drag select of 107 residues, 1 pseudobonds |
| 61201 | | |
| 61202 | | > select up |
| 61203 | | |
| 61204 | | 934 atoms, 947 bonds, 1 pseudobond, 123 residues, 2 models selected |
| 61205 | | |
| 61206 | | > select clear |
| 61207 | | |
| 61208 | | Drag select of 108 residues, 1 pseudobonds |
| 61209 | | |
| 61210 | | > select up |
| 61211 | | |
| 61212 | | 934 atoms, 947 bonds, 1 pseudobond, 123 residues, 2 models selected |
| 61213 | | |
| 61214 | | > select down |
| 61215 | | |
| 61216 | | 823 atoms, 1 pseudobond, 108 residues, 2 models selected |
| 61217 | | |
| 61218 | | > select clear |
| 61219 | | |
| 61220 | | Drag select of 111 residues, 1 pseudobonds |
| 61221 | | |
| 61222 | | > select clear |
| 61223 | | |
| 61224 | | Drag select of 106 residues, 1 pseudobonds |
| 61225 | | |
| 61226 | | > select up |
| 61227 | | |
| 61228 | | 6468 atoms, 6566 bonds, 1 pseudobond, 820 residues, 2 models selected |
| 61229 | | |
| 61230 | | > select down |
| 61231 | | |
| 61232 | | 804 atoms, 1 pseudobond, 106 residues, 2 models selected |
| 61233 | | |
| 61234 | | > select clear |
| 61235 | | |
| 61236 | | Drag select of 108 residues, 1 pseudobonds |
| 61237 | | |
| 61238 | | > select clear |
| 61239 | | |
| 61240 | | Drag select of 2 residues |
| 61241 | | |
| 61242 | | > select clear |
| 61243 | | |
| 61244 | | > select #44/E:710 |
| 61245 | | |
| 61246 | | 5 atoms, 4 bonds, 1 residue, 1 model selected |
| 61247 | | |
| 61248 | | > select #44/E:710 |
| 61249 | | |
| 61250 | | 5 atoms, 4 bonds, 1 residue, 1 model selected |
| 61251 | | |
| 61252 | | > select clear |
| 61253 | | |
| 61254 | | > select #44/E:711 |
| 61255 | | |
| 61256 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 61257 | | |
| 61258 | | > select #44/E:735 |
| 61259 | | |
| 61260 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 61261 | | |
| 61262 | | > select #44/E:736 |
| 61263 | | |
| 61264 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 61265 | | |
| 61266 | | > select clear |
| 61267 | | |
| 61268 | | Drag select of 109 residues, 1 pseudobonds |
| 61269 | | |
| 61270 | | > delete sel |
| 61271 | | |
| 61272 | | > select clear |
| 61273 | | |
| 61274 | | > select #44/E:711 |
| 61275 | | |
| 61276 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 61277 | | |
| 61278 | | > select clear |
| 61279 | | |
| 61280 | | > select #44/E:711 |
| 61281 | | |
| 61282 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 61283 | | |
| 61284 | | > show #!43 models |
| 61285 | | |
| 61286 | | > select #43/E:711 |
| 61287 | | |
| 61288 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 61289 | | |
| 61290 | | > select #44/E:455 |
| 61291 | | |
| 61292 | | 12 atoms, 12 bonds, 1 residue, 1 model selected |
| 61293 | | |
| 61294 | | > select clear |
| 61295 | | |
| 61296 | | > select #44/E:710 |
| 61297 | | |
| 61298 | | 5 atoms, 4 bonds, 1 residue, 1 model selected |
| 61299 | | |
| 61300 | | > select #44/E:455 |
| 61301 | | |
| 61302 | | 12 atoms, 12 bonds, 1 residue, 1 model selected |
| 61303 | | |
| 61304 | | > select #44/E:711 |
| 61305 | | |
| 61306 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 61307 | | |
| 61308 | | > delete sel |
| 61309 | | |
| 61310 | | > hide #!43 models |
| 61311 | | |
| 61312 | | > show #!1 models |
| 61313 | | |
| 61314 | | > fitmap #44 inMap #1 |
| 61315 | | |
| 61316 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#44) to map |
| 61317 | | relion_locres_filtered_20240326_GT.mrc (#1) using 5629 atoms |
| 61318 | | average map value = 0.009299, steps = 68 |
| 61319 | | shifted from previous position = 0.65 |
| 61320 | | rotated from previous position = 1.89 degrees |
| 61321 | | atoms outside contour = 2810, contour level = 0.0073613 |
| 61322 | | |
| 61323 | | Position of copy of fold_20240711_copi_golph3_model_0.cif E (#44) relative to |
| 61324 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 61325 | | Matrix rotation and translation |
| 61326 | | 0.59210262 0.37757492 0.71193516 226.72867709 |
| 61327 | | -0.07064798 -0.85572262 0.51258917 251.65532078 |
| 61328 | | 0.80275983 -0.35380217 -0.48000071 262.28033527 |
| 61329 | | Axis -0.88435515 -0.09270784 -0.45751637 |
| 61330 | | Axis point 0.00000000 129.47464566 39.97365136 |
| 61331 | | Rotation angle (degrees) 150.66970068 |
| 61332 | | Shift along axis -343.83664119 |
| 61333 | | |
| 61334 | | |
| 61335 | | > hide #!1 models |
| 61336 | | |
| 61337 | | > show #!1 models |
| 61338 | | |
| 61339 | | > hide #!1 models |
| 61340 | | |
| 61341 | | Drag select of 168 residues |
| 61342 | | |
| 61343 | | > select up |
| 61344 | | |
| 61345 | | 1391 atoms, 1419 bonds, 172 residues, 1 model selected |
| 61346 | | |
| 61347 | | > delete sel |
| 61348 | | |
| 61349 | | > show #!1 models |
| 61350 | | |
| 61351 | | > fitmap #44 inMap #1 |
| 61352 | | |
| 61353 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#44) to map |
| 61354 | | relion_locres_filtered_20240326_GT.mrc (#1) using 4238 atoms |
| 61355 | | average map value = 0.00908, steps = 52 |
| 61356 | | shifted from previous position = 0.889 |
| 61357 | | rotated from previous position = 0.581 degrees |
| 61358 | | atoms outside contour = 2177, contour level = 0.0073613 |
| 61359 | | |
| 61360 | | Position of copy of fold_20240711_copi_golph3_model_0.cif E (#44) relative to |
| 61361 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 61362 | | Matrix rotation and translation |
| 61363 | | 0.59156554 0.37098251 0.71583670 226.98938097 |
| 61364 | | -0.08051789 -0.85623010 0.51028118 251.70697815 |
| 61365 | | 0.80222633 -0.35950243 -0.47664549 263.22862441 |
| 61366 | | Axis -0.88411669 -0.08781323 -0.45894064 |
| 61367 | | Axis point 0.00000000 130.27549443 39.75547073 |
| 61368 | | Rotation angle (degrees) 150.53484706 |
| 61369 | | Shift along axis -343.59461614 |
| 61370 | | |
| 61371 | | |
| 61372 | | > fitmap #44 inMap #1 |
| 61373 | | |
| 61374 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#44) to map |
| 61375 | | relion_locres_filtered_20240326_GT.mrc (#1) using 4238 atoms |
| 61376 | | average map value = 0.00908, steps = 64 |
| 61377 | | shifted from previous position = 0.0343 |
| 61378 | | rotated from previous position = 0.0182 degrees |
| 61379 | | atoms outside contour = 2174, contour level = 0.0073613 |
| 61380 | | |
| 61381 | | Position of copy of fold_20240711_copi_golph3_model_0.cif E (#44) relative to |
| 61382 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 61383 | | Matrix rotation and translation |
| 61384 | | 0.59182015 0.37092770 0.71565463 226.99041357 |
| 61385 | | -0.08049239 -0.85619924 0.51033699 251.73479534 |
| 61386 | | 0.80204107 -0.35963246 -0.47685911 263.24852963 |
| 61387 | | Axis -0.88419130 -0.08779865 -0.45879969 |
| 61388 | | Axis point 0.00000000 130.30411815 39.78107646 |
| 61389 | | Rotation angle (degrees) 150.53066235 |
| 61390 | | Shift along axis -343.58326437 |
| 61391 | | |
| 61392 | | |
| 61393 | | > hide #!1 models |
| 61394 | | |
| 61395 | | Drag select of 47 residues |
| 61396 | | |
| 61397 | | > select up |
| 61398 | | |
| 61399 | | 382 atoms, 388 bonds, 48 residues, 1 model selected |
| 61400 | | |
| 61401 | | > delete sel |
| 61402 | | |
| 61403 | | > show #!1 models |
| 61404 | | |
| 61405 | | > fitmap #44 inMap #1 |
| 61406 | | |
| 61407 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#44) to map |
| 61408 | | relion_locres_filtered_20240326_GT.mrc (#1) using 3856 atoms |
| 61409 | | average map value = 0.009018, steps = 48 |
| 61410 | | shifted from previous position = 0.371 |
| 61411 | | rotated from previous position = 0.406 degrees |
| 61412 | | atoms outside contour = 1995, contour level = 0.0073613 |
| 61413 | | |
| 61414 | | Position of copy of fold_20240711_copi_golph3_model_0.cif E (#44) relative to |
| 61415 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 61416 | | Matrix rotation and translation |
| 61417 | | 0.58961576 0.36849782 0.71872291 227.35977820 |
| 61418 | | -0.08716202 -0.85562984 0.51019639 252.02457887 |
| 61419 | | 0.80296702 -0.36346517 -0.47237383 263.49807121 |
| 61420 | | Axis -0.88342999 -0.08518605 -0.46075458 |
| 61421 | | Axis point 0.00000000 130.78947771 39.10958282 |
| 61422 | | Rotation angle (degrees) 150.36510653 |
| 61423 | | Shift along axis -343.73336977 |
| 61424 | | |
| 61425 | | |
| 61426 | | > fitmap #44 inMap #1 |
| 61427 | | |
| 61428 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#44) to map |
| 61429 | | relion_locres_filtered_20240326_GT.mrc (#1) using 3856 atoms |
| 61430 | | average map value = 0.009019, steps = 48 |
| 61431 | | shifted from previous position = 0.0432 |
| 61432 | | rotated from previous position = 0.0409 degrees |
| 61433 | | atoms outside contour = 1998, contour level = 0.0073613 |
| 61434 | | |
| 61435 | | Position of copy of fold_20240711_copi_golph3_model_0.cif E (#44) relative to |
| 61436 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 61437 | | Matrix rotation and translation |
| 61438 | | 0.58981753 0.36878021 0.71841245 227.31394980 |
| 61439 | | -0.08648174 -0.85567229 0.51024096 251.99800272 |
| 61440 | | 0.80289239 -0.36307862 -0.47279776 263.47390004 |
| 61441 | | Axis -0.88349987 -0.08546473 -0.46056894 |
| 61442 | | Axis point 0.00000000 130.74073406 39.17680080 |
| 61443 | | Rotation angle (degrees) 150.38044106 |
| 61444 | | Shift along axis -343.71668325 |
| 61445 | | |
| 61446 | | |
| 61447 | | > fitmap #44 inMap #1 |
| 61448 | | |
| 61449 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#44) to map |
| 61450 | | relion_locres_filtered_20240326_GT.mrc (#1) using 3856 atoms |
| 61451 | | average map value = 0.009018, steps = 28 |
| 61452 | | shifted from previous position = 0.0289 |
| 61453 | | rotated from previous position = 0.0173 degrees |
| 61454 | | atoms outside contour = 1995, contour level = 0.0073613 |
| 61455 | | |
| 61456 | | Position of copy of fold_20240711_copi_golph3_model_0.cif E (#44) relative to |
| 61457 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 61458 | | Matrix rotation and translation |
| 61459 | | 0.58978570 0.36861431 0.71852371 227.34342395 |
| 61460 | | -0.08678141 -0.85566478 0.51020268 252.00086481 |
| 61461 | | 0.80288344 -0.36326474 -0.47266998 263.48577416 |
| 61462 | | Axis -0.88348680 -0.08532741 -0.46061948 |
| 61463 | | Axis point 0.00000000 130.76047116 39.15273292 |
| 61464 | | Rotation angle (degrees) 150.37444458 |
| 61465 | | Shift along axis -343.72417541 |
| 61466 | | |
| 61467 | | |
| 61468 | | > hide #!1 models |
| 61469 | | |
| 61470 | | Drag select of 8 residues |
| 61471 | | |
| 61472 | | > select up |
| 61473 | | |
| 61474 | | 137 atoms, 138 bonds, 17 residues, 1 model selected |
| 61475 | | |
| 61476 | | > delete sel |
| 61477 | | |
| 61478 | | > show #!1 models |
| 61479 | | |
| 61480 | | > fitmap #44 inMap #1 |
| 61481 | | |
| 61482 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#44) to map |
| 61483 | | relion_locres_filtered_20240326_GT.mrc (#1) using 3719 atoms |
| 61484 | | average map value = 0.008983, steps = 40 |
| 61485 | | shifted from previous position = 0.186 |
| 61486 | | rotated from previous position = 0.311 degrees |
| 61487 | | atoms outside contour = 1911, contour level = 0.0073613 |
| 61488 | | |
| 61489 | | Position of copy of fold_20240711_copi_golph3_model_0.cif E (#44) relative to |
| 61490 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 61491 | | Matrix rotation and translation |
| 61492 | | 0.58940097 0.36876303 0.71876305 227.50271713 |
| 61493 | | -0.09114214 -0.85369825 0.51273034 252.22456685 |
| 61494 | | 0.80268276 -0.36771336 -0.46956073 263.59943137 |
| 61495 | | Axis -0.88321410 -0.08418377 -0.46135231 |
| 61496 | | Axis point 0.00000000 131.13925552 38.63367265 |
| 61497 | | Rotation angle (degrees) 150.10370783 |
| 61498 | | Shift along axis -343.77902715 |
| 61499 | | |
| 61500 | | |
| 61501 | | > fitmap #44 inMap #1 |
| 61502 | | |
| 61503 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#44) to map |
| 61504 | | relion_locres_filtered_20240326_GT.mrc (#1) using 3719 atoms |
| 61505 | | average map value = 0.008983, steps = 44 |
| 61506 | | shifted from previous position = 0.0333 |
| 61507 | | rotated from previous position = 0.0452 degrees |
| 61508 | | atoms outside contour = 1912, contour level = 0.0073613 |
| 61509 | | |
| 61510 | | Position of copy of fold_20240711_copi_golph3_model_0.cif E (#44) relative to |
| 61511 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 61512 | | Matrix rotation and translation |
| 61513 | | 0.58963985 0.36910282 0.71839262 227.46618481 |
| 61514 | | -0.09039832 -0.85371832 0.51282860 252.19550746 |
| 61515 | | 0.80259142 -0.36732566 -0.47002007 263.57825436 |
| 61516 | | Axis -0.88329455 -0.08449921 -0.46114057 |
| 61517 | | Axis point 0.00000000 131.08567575 38.70544988 |
| 61518 | | Rotation angle (degrees) 150.11753520 |
| 61519 | | Shift along axis -343.77658925 |
| 61520 | | |
| 61521 | | |
| 61522 | | > fitmap #44 inMap #1 |
| 61523 | | |
| 61524 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#44) to map |
| 61525 | | relion_locres_filtered_20240326_GT.mrc (#1) using 3719 atoms |
| 61526 | | average map value = 0.008982, steps = 40 |
| 61527 | | shifted from previous position = 0.0258 |
| 61528 | | rotated from previous position = 0.0554 degrees |
| 61529 | | atoms outside contour = 1912, contour level = 0.0073613 |
| 61530 | | |
| 61531 | | Position of copy of fold_20240711_copi_golph3_model_0.cif E (#44) relative to |
| 61532 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 61533 | | Matrix rotation and translation |
| 61534 | | 0.58941028 0.36871102 0.71878209 227.49719093 |
| 61535 | | -0.09133467 -0.85364409 0.51278626 252.22381797 |
| 61536 | | 0.80265403 -0.36789122 -0.46947050 263.59906269 |
| 61537 | | Axis -0.88321180 -0.08411329 -0.46136956 |
| 61538 | | Axis point 0.00000000 131.15350539 38.61823818 |
| 61539 | | Rotation angle (degrees) 150.09487469 |
| 61540 | | Shift along axis -343.76016394 |
| 61541 | | |
| 61542 | | |
| 61543 | | > hide #!1 models |
| 61544 | | |
| 61545 | | Drag select of 7 residues |
| 61546 | | |
| 61547 | | > select up |
| 61548 | | |
| 61549 | | 76 atoms, 77 bonds, 9 residues, 1 model selected |
| 61550 | | |
| 61551 | | > delete sel |
| 61552 | | |
| 61553 | | > show #!1 models |
| 61554 | | |
| 61555 | | > fitmap #44 inMap #1 |
| 61556 | | |
| 61557 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#44) to map |
| 61558 | | relion_locres_filtered_20240326_GT.mrc (#1) using 3643 atoms |
| 61559 | | average map value = 0.009033, steps = 60 |
| 61560 | | shifted from previous position = 0.0939 |
| 61561 | | rotated from previous position = 0.254 degrees |
| 61562 | | atoms outside contour = 1868, contour level = 0.0073613 |
| 61563 | | |
| 61564 | | Position of copy of fold_20240711_copi_golph3_model_0.cif E (#44) relative to |
| 61565 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 61566 | | Matrix rotation and translation |
| 61567 | | 0.58721603 0.36738063 0.72125502 227.63928427 |
| 61568 | | -0.09498580 -0.85363227 0.51214221 252.38642438 |
| 61569 | | 0.80383769 -0.36924710 -0.46637062 263.59994149 |
| 61570 | | Axis -0.88251536 -0.08268817 -0.46295713 |
| 61571 | | Axis point 0.00000000 131.35972548 38.14252414 |
| 61572 | | Rotation angle (degrees) 150.04219923 |
| 61573 | | Shift along axis -343.80001020 |
| 61574 | | |
| 61575 | | |
| 61576 | | > hide #!1 models |
| 61577 | | |
| 61578 | | Drag select of 7 residues |
| 61579 | | |
| 61580 | | > select up |
| 61581 | | |
| 61582 | | 70 atoms, 70 bonds, 8 residues, 1 model selected |
| 61583 | | |
| 61584 | | > delete sel |
| 61585 | | |
| 61586 | | > fitmap #44 inMap #1 |
| 61587 | | |
| 61588 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#44) to map |
| 61589 | | relion_locres_filtered_20240326_GT.mrc (#1) using 3573 atoms |
| 61590 | | average map value = 0.009065, steps = 60 |
| 61591 | | shifted from previous position = 0.0944 |
| 61592 | | rotated from previous position = 0.254 degrees |
| 61593 | | atoms outside contour = 1823, contour level = 0.0073613 |
| 61594 | | |
| 61595 | | Position of copy of fold_20240711_copi_golph3_model_0.cif E (#44) relative to |
| 61596 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 61597 | | Matrix rotation and translation |
| 61598 | | 0.58804387 0.36337399 0.72260899 227.63918544 |
| 61599 | | -0.09818317 -0.85472554 0.50971003 252.52385510 |
| 61600 | | 0.80284772 -0.37067990 -0.46693891 263.68704248 |
| 61601 | | Axis -0.88279454 -0.08045790 -0.46281782 |
| 61602 | | Axis point 0.00000000 131.74225731 38.14775838 |
| 61603 | | Rotation angle (degrees) 150.09006364 |
| 61604 | | Shift along axis -343.31522855 |
| 61605 | | |
| 61606 | | |
| 61607 | | > show #!1 models |
| 61608 | | |
| 61609 | | > hide #!1 models |
| 61610 | | |
| 61611 | | Drag select of 15 residues |
| 61612 | | |
| 61613 | | > select up |
| 61614 | | |
| 61615 | | 118 atoms, 119 bonds, 17 residues, 1 model selected |
| 61616 | | |
| 61617 | | > delete sel |
| 61618 | | |
| 61619 | | > show #!1 models |
| 61620 | | |
| 61621 | | > fitmap #44 inMap #1 |
| 61622 | | |
| 61623 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#44) to map |
| 61624 | | relion_locres_filtered_20240326_GT.mrc (#1) using 3455 atoms |
| 61625 | | average map value = 0.008967, steps = 40 |
| 61626 | | shifted from previous position = 0.17 |
| 61627 | | rotated from previous position = 0.499 degrees |
| 61628 | | atoms outside contour = 1784, contour level = 0.0073613 |
| 61629 | | |
| 61630 | | Position of copy of fold_20240711_copi_golph3_model_0.cif E (#44) relative to |
| 61631 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 61632 | | Matrix rotation and translation |
| 61633 | | 0.58481873 0.36251496 0.72565140 227.88550631 |
| 61634 | | -0.10569784 -0.85289709 0.51126757 252.84421015 |
| 61635 | | 0.80424811 -0.37569864 -0.46047314 263.73281084 |
| 61636 | | Axis -0.88164404 -0.07812509 -0.46540333 |
| 61637 | | Axis point 0.00000000 132.22551733 37.13312945 |
| 61638 | | Rotation angle (degrees) 149.80010785 |
| 61639 | | Shift along axis -343.40950360 |
| 61640 | | |
| 61641 | | |
| 61642 | | > fitmap #44 inMap #1 |
| 61643 | | |
| 61644 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#44) to map |
| 61645 | | relion_locres_filtered_20240326_GT.mrc (#1) using 3455 atoms |
| 61646 | | average map value = 0.008967, steps = 28 |
| 61647 | | shifted from previous position = 0.00479 |
| 61648 | | rotated from previous position = 0.0195 degrees |
| 61649 | | atoms outside contour = 1783, contour level = 0.0073613 |
| 61650 | | |
| 61651 | | Position of copy of fold_20240711_copi_golph3_model_0.cif E (#44) relative to |
| 61652 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 61653 | | Matrix rotation and translation |
| 61654 | | 0.58487473 0.36266704 0.72553026 227.88007614 |
| 61655 | | -0.10536217 -0.85292825 0.51128486 252.83430841 |
| 61656 | | 0.80425143 -0.37548104 -0.46064480 263.72708147 |
| 61657 | | Axis -0.88166605 -0.07826844 -0.46533754 |
| 61658 | | Axis point 0.00000000 132.19898703 37.16183201 |
| 61659 | | Rotation angle (degrees) 149.80847079 |
| 61660 | | Shift along axis -343.42518480 |
| 61661 | | |
| 61662 | | |
| 61663 | | > hide #!1 models |
| 61664 | | |
| 61665 | | Drag select of 24 residues |
| 61666 | | |
| 61667 | | > select clear |
| 61668 | | |
| 61669 | | Drag select of 14 residues |
| 61670 | | |
| 61671 | | > select up |
| 61672 | | |
| 61673 | | 127 atoms, 128 bonds, 17 residues, 1 model selected |
| 61674 | | |
| 61675 | | > select up |
| 61676 | | |
| 61677 | | 3455 atoms, 3497 bonds, 439 residues, 1 model selected |
| 61678 | | |
| 61679 | | > select down |
| 61680 | | |
| 61681 | | 127 atoms, 128 bonds, 17 residues, 1 model selected |
| 61682 | | |
| 61683 | | > select clear |
| 61684 | | |
| 61685 | | Drag select of 12 residues |
| 61686 | | |
| 61687 | | > select up |
| 61688 | | |
| 61689 | | 144 atoms, 145 bonds, 20 residues, 1 model selected |
| 61690 | | |
| 61691 | | > delete sel |
| 61692 | | |
| 61693 | | > show #!1 models |
| 61694 | | |
| 61695 | | > fitmap #44 inMap #1 |
| 61696 | | |
| 61697 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#44) to map |
| 61698 | | relion_locres_filtered_20240326_GT.mrc (#1) using 3311 atoms |
| 61699 | | average map value = 0.008976, steps = 44 |
| 61700 | | shifted from previous position = 0.294 |
| 61701 | | rotated from previous position = 0.626 degrees |
| 61702 | | atoms outside contour = 1710, contour level = 0.0073613 |
| 61703 | | |
| 61704 | | Position of copy of fold_20240711_copi_golph3_model_0.cif E (#44) relative to |
| 61705 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 61706 | | Matrix rotation and translation |
| 61707 | | 0.58670575 0.35271088 0.72895226 227.91230109 |
| 61708 | | -0.11307811 -0.85566093 0.50503239 253.22324625 |
| 61709 | | 0.80186639 -0.37873396 -0.46213731 263.98791614 |
| 61710 | | Axis -0.88230346 -0.07279344 -0.46501798 |
| 61711 | | Axis point 0.00000000 133.15706792 37.19930453 |
| 61712 | | Rotation angle (degrees) 149.94513746 |
| 61713 | | Shift along axis -342.27992947 |
| 61714 | | |
| 61715 | | |
| 61716 | | > fitmap #44 inMap #1 |
| 61717 | | |
| 61718 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#44) to map |
| 61719 | | relion_locres_filtered_20240326_GT.mrc (#1) using 3311 atoms |
| 61720 | | average map value = 0.008976, steps = 28 |
| 61721 | | shifted from previous position = 0.034 |
| 61722 | | rotated from previous position = 0.014 degrees |
| 61723 | | atoms outside contour = 1710, contour level = 0.0073613 |
| 61724 | | |
| 61725 | | Position of copy of fold_20240711_copi_golph3_model_0.cif E (#44) relative to |
| 61726 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 61727 | | Matrix rotation and translation |
| 61728 | | 0.58675841 0.35280118 0.72886617 227.88952369 |
| 61729 | | -0.11284029 -0.85569344 0.50503050 253.19118511 |
| 61730 | | 0.80186136 -0.37857636 -0.46227513 263.97734405 |
| 61731 | | Axis -0.88232341 -0.07288916 -0.46496512 |
| 61732 | | Axis point 0.00000000 133.12775430 37.22686107 |
| 61733 | | Rotation angle (degrees) 149.95186985 |
| 61734 | | Shift along axis -342.26741368 |
| 61735 | | |
| 61736 | | |
| 61737 | | > hide #!1 models |
| 61738 | | |
| 61739 | | Drag select of 16 residues |
| 61740 | | |
| 61741 | | > select up |
| 61742 | | |
| 61743 | | 155 atoms, 154 bonds, 19 residues, 1 model selected |
| 61744 | | |
| 61745 | | > delete sel |
| 61746 | | |
| 61747 | | > show #!1 models |
| 61748 | | |
| 61749 | | > fitmap #44 inMap #1 |
| 61750 | | |
| 61751 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#44) to map |
| 61752 | | relion_locres_filtered_20240326_GT.mrc (#1) using 3156 atoms |
| 61753 | | average map value = 0.008983, steps = 48 |
| 61754 | | shifted from previous position = 0.199 |
| 61755 | | rotated from previous position = 0.616 degrees |
| 61756 | | atoms outside contour = 1643, contour level = 0.0073613 |
| 61757 | | |
| 61758 | | Position of copy of fold_20240711_copi_golph3_model_0.cif E (#44) relative to |
| 61759 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 61760 | | Matrix rotation and translation |
| 61761 | | 0.58674709 0.34943351 0.73049577 228.00257976 |
| 61762 | | -0.12309162 -0.85313185 0.50696598 253.65282207 |
| 61763 | | 0.80036011 -0.38737872 -0.45756030 264.14363985 |
| 61764 | | Axis -0.88207505 -0.06890586 -0.46604248 |
| 61765 | | Axis point 0.00000000 134.11030158 36.32607643 |
| 61766 | | Rotation angle (degrees) 149.53878453 |
| 61767 | | Shift along axis -341.69570906 |
| 61768 | | |
| 61769 | | |
| 61770 | | > fitmap #44 inMap #1 |
| 61771 | | |
| 61772 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#44) to map |
| 61773 | | relion_locres_filtered_20240326_GT.mrc (#1) using 3156 atoms |
| 61774 | | average map value = 0.008984, steps = 28 |
| 61775 | | shifted from previous position = 0.0368 |
| 61776 | | rotated from previous position = 0.0358 degrees |
| 61777 | | atoms outside contour = 1640, contour level = 0.0073613 |
| 61778 | | |
| 61779 | | Position of copy of fold_20240711_copi_golph3_model_0.cif E (#44) relative to |
| 61780 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 61781 | | Matrix rotation and translation |
| 61782 | | 0.58674017 0.34919477 0.73061548 228.01580783 |
| 61783 | | -0.12369875 -0.85300580 0.50703030 253.70390106 |
| 61784 | | 0.80027157 -0.38787127 -0.45729781 264.15982126 |
| 61785 | | Axis -0.88206005 -0.06865655 -0.46610766 |
| 61786 | | Axis point 0.00000000 134.18067121 36.27293002 |
| 61787 | | Rotation angle (degrees) 149.51722667 |
| 61788 | | Shift along axis -341.66898578 |
| 61789 | | |
| 61790 | | |
| 61791 | | > hide #!1 models |
| 61792 | | |
| 61793 | | Drag select of 13 residues |
| 61794 | | |
| 61795 | | > fitmap sel inMap #1 |
| 61796 | | |
| 61797 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#44) to map |
| 61798 | | relion_locres_filtered_20240326_GT.mrc (#1) using 98 atoms |
| 61799 | | average map value = 0.01059, steps = 64 |
| 61800 | | shifted from previous position = 5.08 |
| 61801 | | rotated from previous position = 17.1 degrees |
| 61802 | | atoms outside contour = 33, contour level = 0.0073613 |
| 61803 | | |
| 61804 | | Position of copy of fold_20240711_copi_golph3_model_0.cif E (#44) relative to |
| 61805 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 61806 | | Matrix rotation and translation |
| 61807 | | 0.52262471 0.58169356 0.62329449 222.36519551 |
| 61808 | | -0.10358496 -0.68234325 0.72365589 255.15673104 |
| 61809 | | 0.84624676 -0.44276438 -0.29635473 268.14156148 |
| 61810 | | Axis -0.85073322 -0.16261111 -0.49981058 |
| 61811 | | Axis point 0.00000000 126.34776879 23.08470181 |
| 61812 | | Rotation angle (degrees) 136.72204990 |
| 61813 | | Shift along axis -364.68476855 |
| 61814 | | |
| 61815 | | |
| 61816 | | > show #!1 models |
| 61817 | | |
| 61818 | | > fitmap sel inMap #1 |
| 61819 | | |
| 61820 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#44) to map |
| 61821 | | relion_locres_filtered_20240326_GT.mrc (#1) using 98 atoms |
| 61822 | | average map value = 0.01059, steps = 64 |
| 61823 | | shifted from previous position = 5.08 |
| 61824 | | rotated from previous position = 17.1 degrees |
| 61825 | | atoms outside contour = 33, contour level = 0.0073613 |
| 61826 | | |
| 61827 | | Position of copy of fold_20240711_copi_golph3_model_0.cif E (#44) relative to |
| 61828 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 61829 | | Matrix rotation and translation |
| 61830 | | 0.52262471 0.58169356 0.62329449 222.36519551 |
| 61831 | | -0.10358496 -0.68234325 0.72365589 255.15673104 |
| 61832 | | 0.84624676 -0.44276438 -0.29635473 268.14156148 |
| 61833 | | Axis -0.85073322 -0.16261111 -0.49981058 |
| 61834 | | Axis point 0.00000000 126.34776879 23.08470181 |
| 61835 | | Rotation angle (degrees) 136.72204990 |
| 61836 | | Shift along axis -364.68476855 |
| 61837 | | |
| 61838 | | |
| 61839 | | > hide #!1 models |
| 61840 | | |
| 61841 | | Drag select of 51 residues |
| 61842 | | |
| 61843 | | > delete sel |
| 61844 | | |
| 61845 | | > show #!1 models |
| 61846 | | |
| 61847 | | > fitmap #44 inMap #1 |
| 61848 | | |
| 61849 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#44) to map |
| 61850 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2760 atoms |
| 61851 | | average map value = 0.009631, steps = 40 |
| 61852 | | shifted from previous position = 0.152 |
| 61853 | | rotated from previous position = 0.785 degrees |
| 61854 | | atoms outside contour = 1317, contour level = 0.0073613 |
| 61855 | | |
| 61856 | | Position of copy of fold_20240711_copi_golph3_model_0.cif E (#44) relative to |
| 61857 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 61858 | | Matrix rotation and translation |
| 61859 | | 0.59165911 0.34960901 0.72643860 227.97227162 |
| 61860 | | -0.13150098 -0.84715870 0.51481029 254.04935900 |
| 61861 | | 0.79539109 -0.40011959 -0.45525523 264.34118038 |
| 61862 | | Axis -0.88312792 -0.06655578 -0.46438713 |
| 61863 | | Axis point 0.00000000 135.18775272 35.66164218 |
| 61864 | | Rotation angle (degrees) 148.80145452 |
| 61865 | | Shift along axis -340.99377341 |
| 61866 | | |
| 61867 | | |
| 61868 | | > fitmap #44 inMap #1 |
| 61869 | | |
| 61870 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#44) to map |
| 61871 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2760 atoms |
| 61872 | | average map value = 0.009632, steps = 44 |
| 61873 | | shifted from previous position = 0.0176 |
| 61874 | | rotated from previous position = 0.0174 degrees |
| 61875 | | atoms outside contour = 1318, contour level = 0.0073613 |
| 61876 | | |
| 61877 | | Position of copy of fold_20240711_copi_golph3_model_0.cif E (#44) relative to |
| 61878 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 61879 | | Matrix rotation and translation |
| 61880 | | 0.59142336 0.34972639 0.72657406 227.98648145 |
| 61881 | | -0.13155370 -0.84713303 0.51483906 254.06420020 |
| 61882 | | 0.79555769 -0.40007135 -0.45500646 264.34597440 |
| 61883 | | Axis -0.88305467 -0.06658173 -0.46452268 |
| 61884 | | Axis point 0.00000000 135.18357708 35.63165379 |
| 61885 | | Rotation angle (degrees) 148.79931483 |
| 61886 | | Shift along axis -341.03526101 |
| 61887 | | |
| 61888 | | |
| 61889 | | > hide #!1 models |
| 61890 | | |
| 61891 | | > combine #34.5 |
| 61892 | | |
| 61893 | | > hide #!44 models |
| 61894 | | |
| 61895 | | > rename #43 20240711_copi_golph3_beta_S711-L953.cif |
| 61896 | | |
| 61897 | | > rename #44 "20240711_copi_golph3_beta_H311-E659.cif E" |
| 61898 | | |
| 61899 | | > hide #45 models |
| 61900 | | |
| 61901 | | > show #45 models |
| 61902 | | |
| 61903 | | Drag select of 119 residues |
| 61904 | | |
| 61905 | | > select up |
| 61906 | | |
| 61907 | | 983 atoms, 1001 bonds, 126 residues, 1 model selected |
| 61908 | | |
| 61909 | | > delete sel |
| 61910 | | |
| 61911 | | Drag select of 125 residues, 1 pseudobonds |
| 61912 | | |
| 61913 | | > select up |
| 61914 | | |
| 61915 | | 984 atoms, 997 bonds, 1 pseudobond, 130 residues, 2 models selected |
| 61916 | | |
| 61917 | | > select clear |
| 61918 | | |
| 61919 | | Drag select of 98 residues, 1 pseudobonds |
| 61920 | | |
| 61921 | | > select up |
| 61922 | | |
| 61923 | | 854 atoms, 864 bonds, 1 pseudobond, 113 residues, 2 models selected |
| 61924 | | |
| 61925 | | > delete sel |
| 61926 | | |
| 61927 | | Drag select of 3 residues |
| 61928 | | |
| 61929 | | > delete sel |
| 61930 | | |
| 61931 | | > select #45/E:711 |
| 61932 | | |
| 61933 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 61934 | | |
| 61935 | | > delete sel |
| 61936 | | |
| 61937 | | > select clear |
| 61938 | | |
| 61939 | | [Repeated 1 time(s)] |
| 61940 | | |
| 61941 | | > show #!1 models |
| 61942 | | |
| 61943 | | > fitmap #45 inMap #1 |
| 61944 | | |
| 61945 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#45) to map |
| 61946 | | relion_locres_filtered_20240326_GT.mrc (#1) using 5629 atoms |
| 61947 | | average map value = 0.009299, steps = 84 |
| 61948 | | shifted from previous position = 0.657 |
| 61949 | | rotated from previous position = 1.9 degrees |
| 61950 | | atoms outside contour = 2808, contour level = 0.0073613 |
| 61951 | | |
| 61952 | | Position of copy of fold_20240711_copi_golph3_model_0.cif E (#45) relative to |
| 61953 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 61954 | | Matrix rotation and translation |
| 61955 | | 0.59225848 0.37767571 0.71175203 226.72630080 |
| 61956 | | -0.07049743 -0.85566692 0.51270288 251.66003249 |
| 61957 | | 0.80265809 -0.35382932 -0.48015082 262.27101331 |
| 61958 | | Axis -0.88440020 -0.09278056 -0.45741453 |
| 61959 | | Axis point 0.00000000 129.47368947 39.98608571 |
| 61960 | | Rotation angle (degrees) 150.66610695 |
| 61961 | | Shift along axis -343.83251595 |
| 61962 | | |
| 61963 | | |
| 61964 | | > fitmap #45 inMap #1 |
| 61965 | | |
| 61966 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#45) to map |
| 61967 | | relion_locres_filtered_20240326_GT.mrc (#1) using 5629 atoms |
| 61968 | | average map value = 0.009298, steps = 80 |
| 61969 | | shifted from previous position = 0.0192 |
| 61970 | | rotated from previous position = 0.00781 degrees |
| 61971 | | atoms outside contour = 2811, contour level = 0.0073613 |
| 61972 | | |
| 61973 | | Position of copy of fold_20240711_copi_golph3_model_0.cif E (#45) relative to |
| 61974 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 61975 | | Matrix rotation and translation |
| 61976 | | 0.59223513 0.37773154 0.71174183 226.71200459 |
| 61977 | | -0.07036932 -0.85569058 0.51268098 251.64790293 |
| 61978 | | 0.80268656 -0.35371247 -0.48018932 262.26276156 |
| 61979 | | Axis -0.88439596 -0.09283444 -0.45741179 |
| 61980 | | Axis point 0.00000000 129.45801962 39.99582134 |
| 61981 | | Rotation angle (degrees) 150.67110775 |
| 61982 | | Shift along axis -343.82685295 |
| 61983 | | |
| 61984 | | |
| 61985 | | > hide #!1 models |
| 61986 | | |
| 61987 | | Drag select of 311 residues |
| 61988 | | |
| 61989 | | > select up |
| 61990 | | |
| 61991 | | 2750 atoms, 2784 bonds, 348 residues, 1 model selected |
| 61992 | | |
| 61993 | | > delete sel |
| 61994 | | |
| 61995 | | > show #!1 models |
| 61996 | | |
| 61997 | | > fitmap #45 inMap #1 |
| 61998 | | |
| 61999 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#45) to map |
| 62000 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2879 atoms |
| 62001 | | average map value = 0.01059, steps = 52 |
| 62002 | | shifted from previous position = 1.26 |
| 62003 | | rotated from previous position = 0.253 degrees |
| 62004 | | atoms outside contour = 1288, contour level = 0.0073613 |
| 62005 | | |
| 62006 | | Position of copy of fold_20240711_copi_golph3_model_0.cif E (#45) relative to |
| 62007 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 62008 | | Matrix rotation and translation |
| 62009 | | 0.59321265 0.38003875 0.70969663 225.96482374 |
| 62010 | | -0.07094065 -0.85345417 0.51631716 250.99038089 |
| 62011 | | 0.80191407 -0.35663221 -0.47931961 261.53126127 |
| 62012 | | Axis -0.88455702 -0.09344367 -0.45697610 |
| 62013 | | Axis point 0.00000000 129.20184570 39.73542944 |
| 62014 | | Rotation angle (degrees) 150.43314979 |
| 62015 | | Shift along axis -342.84576864 |
| 62016 | | |
| 62017 | | |
| 62018 | | > fitmap #45 inMap #1 |
| 62019 | | |
| 62020 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#45) to map |
| 62021 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2879 atoms |
| 62022 | | average map value = 0.01059, steps = 40 |
| 62023 | | shifted from previous position = 0.0535 |
| 62024 | | rotated from previous position = 0.101 degrees |
| 62025 | | atoms outside contour = 1290, contour level = 0.0073613 |
| 62026 | | |
| 62027 | | Position of copy of fold_20240711_copi_golph3_model_0.cif E (#45) relative to |
| 62028 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 62029 | | Matrix rotation and translation |
| 62030 | | 0.59430648 0.37945725 0.70909238 225.97131630 |
| 62031 | | -0.07012750 -0.85388494 0.51571567 251.02518193 |
| 62032 | | 0.80117535 -0.35622004 -0.48085896 261.42747744 |
| 62033 | | Axis -0.88491636 -0.09345382 -0.45627779 |
| 62034 | | Axis point 0.00000000 129.21745407 39.86020483 |
| 62035 | | Rotation angle (degrees) 150.48406493 |
| 62036 | | Shift along axis -342.70852907 |
| 62037 | | |
| 62038 | | |
| 62039 | | > fitmap #45 inMap #1 |
| 62040 | | |
| 62041 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#45) to map |
| 62042 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2879 atoms |
| 62043 | | average map value = 0.01059, steps = 44 |
| 62044 | | shifted from previous position = 0.0151 |
| 62045 | | rotated from previous position = 0.0169 degrees |
| 62046 | | atoms outside contour = 1288, contour level = 0.0073613 |
| 62047 | | |
| 62048 | | Position of copy of fold_20240711_copi_golph3_model_0.cif E (#45) relative to |
| 62049 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 62050 | | Matrix rotation and translation |
| 62051 | | 0.59421798 0.37952808 0.70912864 225.97949150 |
| 62052 | | -0.07032210 -0.85377549 0.51587034 251.02058532 |
| 62053 | | 0.80122393 -0.35640685 -0.48063954 261.44695153 |
| 62054 | | Axis -0.88488174 -0.09342609 -0.45635060 |
| 62055 | | Axis point 0.00000000 129.22398147 39.83839206 |
| 62056 | | Rotation angle (degrees) 150.47009089 |
| 62057 | | Shift along axis -342.72846959 |
| 62058 | | |
| 62059 | | |
| 62060 | | > fitmap #45 inMap #1 |
| 62061 | | |
| 62062 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#45) to map |
| 62063 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2879 atoms |
| 62064 | | average map value = 0.01059, steps = 40 |
| 62065 | | shifted from previous position = 0.00768 |
| 62066 | | rotated from previous position = 0.029 degrees |
| 62067 | | atoms outside contour = 1287, contour level = 0.0073613 |
| 62068 | | |
| 62069 | | Position of copy of fold_20240711_copi_golph3_model_0.cif E (#45) relative to |
| 62070 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 62071 | | Matrix rotation and translation |
| 62072 | | 0.59398329 0.37942187 0.70938205 225.98517523 |
| 62073 | | -0.07074672 -0.85373977 0.51587140 251.00885385 |
| 62074 | | 0.80136056 -0.35660544 -0.48026431 261.46806297 |
| 62075 | | Axis -0.88480505 -0.09327818 -0.45652953 |
| 62076 | | Axis point 0.00000000 129.23630835 39.79919946 |
| 62077 | | Rotation angle (degrees) 150.45984747 |
| 62078 | | Shift along axis -342.73436402 |
| 62079 | | |
| 62080 | | |
| 62081 | | > fitmap #45 inMap #1 |
| 62082 | | |
| 62083 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#45) to map |
| 62084 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2879 atoms |
| 62085 | | average map value = 0.01059, steps = 48 |
| 62086 | | shifted from previous position = 0.0372 |
| 62087 | | rotated from previous position = 0.0583 degrees |
| 62088 | | atoms outside contour = 1291, contour level = 0.0073613 |
| 62089 | | |
| 62090 | | Position of copy of fold_20240711_copi_golph3_model_0.cif E (#45) relative to |
| 62091 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 62092 | | Matrix rotation and translation |
| 62093 | | 0.59328440 0.37979142 0.70976904 225.97057232 |
| 62094 | | -0.07111790 -0.85353201 0.51616407 250.97978551 |
| 62095 | | 0.80184528 -0.35670937 -0.47937727 261.52731805 |
| 62096 | | Axis -0.88458081 -0.09331121 -0.45695712 |
| 62097 | | Axis point 0.00000000 129.21347923 39.73550342 |
| 62098 | | Rotation angle (degrees) 150.43685085 |
| 62099 | | Shift along axis -342.81522902 |
| 62100 | | |
| 62101 | | |
| 62102 | | > fitmap #45 inMap #1 |
| 62103 | | |
| 62104 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#45) to map |
| 62105 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2879 atoms |
| 62106 | | average map value = 0.01059, steps = 40 |
| 62107 | | shifted from previous position = 0.0196 |
| 62108 | | rotated from previous position = 0.0316 degrees |
| 62109 | | atoms outside contour = 1289, contour level = 0.0073613 |
| 62110 | | |
| 62111 | | Position of copy of fold_20240711_copi_golph3_model_0.cif E (#45) relative to |
| 62112 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 62113 | | Matrix rotation and translation |
| 62114 | | 0.59366012 0.37940807 0.70965990 225.98643656 |
| 62115 | | -0.07121481 -0.85364606 0.51596207 250.98998086 |
| 62116 | | 0.80155855 -0.35684440 -0.47975615 261.50442466 |
| 62117 | | Axis -0.88469823 -0.09315074 -0.45676250 |
| 62118 | | Axis point 0.00000000 129.24460273 39.75420461 |
| 62119 | | Rotation angle (degrees) 150.44365724 |
| 62120 | | Shift along axis -342.75511812 |
| 62121 | | |
| 62122 | | |
| 62123 | | > fitmap #45 inMap #1 |
| 62124 | | |
| 62125 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#45) to map |
| 62126 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2879 atoms |
| 62127 | | average map value = 0.01059, steps = 28 |
| 62128 | | shifted from previous position = 0.00929 |
| 62129 | | rotated from previous position = 0.0509 degrees |
| 62130 | | atoms outside contour = 1287, contour level = 0.0073613 |
| 62131 | | |
| 62132 | | Position of copy of fold_20240711_copi_golph3_model_0.cif E (#45) relative to |
| 62133 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 62134 | | Matrix rotation and translation |
| 62135 | | 0.59406746 0.37908202 0.70949325 225.99557899 |
| 62136 | | -0.07075223 -0.85395714 0.51551075 250.99082556 |
| 62137 | | 0.80129768 -0.35644639 -0.48048724 261.46701123 |
| 62138 | | Axis -0.88484216 -0.09316104 -0.45648151 |
| 62139 | | Axis point 0.00000000 129.23418246 39.82618575 |
| 62140 | | Rotation angle (degrees) 150.48054736 |
| 62141 | | Shift along axis -342.70783910 |
| 62142 | | |
| 62143 | | |
| 62144 | | > fitmap #45 inMap #1 |
| 62145 | | |
| 62146 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#45) to map |
| 62147 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2879 atoms |
| 62148 | | average map value = 0.01059, steps = 28 |
| 62149 | | shifted from previous position = 0.0463 |
| 62150 | | rotated from previous position = 0.0829 degrees |
| 62151 | | atoms outside contour = 1289, contour level = 0.0073613 |
| 62152 | | |
| 62153 | | Position of copy of fold_20240711_copi_golph3_model_0.cif E (#45) relative to |
| 62154 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 62155 | | Matrix rotation and translation |
| 62156 | | 0.59463580 0.37964339 0.70871656 225.96009472 |
| 62157 | | -0.06946606 -0.85393703 0.51571893 251.03681805 |
| 62158 | | 0.80098860 -0.35589669 -0.48140920 261.39286546 |
| 62159 | | Axis -0.88502478 -0.09369157 -0.45601866 |
| 62160 | | Axis point 0.00000000 129.19288135 39.91860954 |
| 62161 | | Rotation angle (degrees) 150.49994385 |
| 62162 | | Shift along axis -342.70034326 |
| 62163 | | |
| 62164 | | |
| 62165 | | > hide #!1 models |
| 62166 | | |
| 62167 | | > show #!1 models |
| 62168 | | |
| 62169 | | > hide #!1 models |
| 62170 | | |
| 62171 | | > show #!44 models |
| 62172 | | |
| 62173 | | > show #!43 models |
| 62174 | | |
| 62175 | | > show #34.5 models |
| 62176 | | |
| 62177 | | > hide #34.5 models |
| 62178 | | |
| 62179 | | > show #34.5 models |
| 62180 | | |
| 62181 | | > hide #34.5 models |
| 62182 | | |
| 62183 | | > show #!1 models |
| 62184 | | |
| 62185 | | > hide #!1 models |
| 62186 | | |
| 62187 | | > hide #!44 models |
| 62188 | | |
| 62189 | | > hide #!43 models |
| 62190 | | |
| 62191 | | > rename #45 20240711_copi_golph3_beta_.cif |
| 62192 | | |
| 62193 | | > rename #44 20240711_copi_golph3_beta_H311-E659.cif |
| 62194 | | |
| 62195 | | > rename #45 20240711_copi_golph3_beta_M1-H311_.cif |
| 62196 | | |
| 62197 | | > rename #45 20240711_copi_golph3_beta_M1-H311_K660-.cif |
| 62198 | | |
| 62199 | | > rename #45 20240711_copi_golph3_beta_M1-H311_K660-A710.cif |
| 62200 | | |
| 62201 | | > hide #!45 models |
| 62202 | | |
| 62203 | | > show #!43 models |
| 62204 | | |
| 62205 | | > hide #!43 models |
| 62206 | | |
| 62207 | | > show #!44 models |
| 62208 | | |
| 62209 | | > hide #!44 models |
| 62210 | | |
| 62211 | | > show #34.7 models |
| 62212 | | |
| 62213 | | > show #!1 models |
| 62214 | | |
| 62215 | | > fitmap #45 inMap #1 |
| 62216 | | |
| 62217 | | Fit molecule 20240711_copi_golph3_beta_M1-H311_K660-A710.cif (#45) to map |
| 62218 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2879 atoms |
| 62219 | | average map value = 0.01059, steps = 40 |
| 62220 | | shifted from previous position = 0.0532 |
| 62221 | | rotated from previous position = 0.117 degrees |
| 62222 | | atoms outside contour = 1289, contour level = 0.0073613 |
| 62223 | | |
| 62224 | | Position of 20240711_copi_golph3_beta_M1-H311_K660-A710.cif (#45) relative to |
| 62225 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 62226 | | Matrix rotation and translation |
| 62227 | | 0.59367617 0.37945842 0.70961956 225.98435835 |
| 62228 | | -0.07111226 -0.85364991 0.51596985 250.98930930 |
| 62229 | | 0.80155577 -0.35678165 -0.47980746 261.50161854 |
| 62230 | | Axis -0.88470437 -0.09319534 -0.45674152 |
| 62231 | | Axis point 0.00000000 129.23778490 39.76170662 |
| 62232 | | Rotation angle (degrees) 150.44592891 |
| 62233 | | Shift along axis -342.75902783 |
| 62234 | | |
| 62235 | | |
| 62236 | | > fitmap #45 inMap #1 |
| 62237 | | |
| 62238 | | Fit molecule 20240711_copi_golph3_beta_M1-H311_K660-A710.cif (#45) to map |
| 62239 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2879 atoms |
| 62240 | | average map value = 0.01059, steps = 40 |
| 62241 | | shifted from previous position = 0.00742 |
| 62242 | | rotated from previous position = 0.0217 degrees |
| 62243 | | atoms outside contour = 1288, contour level = 0.0073613 |
| 62244 | | |
| 62245 | | Position of 20240711_copi_golph3_beta_M1-H311_K660-A710.cif (#45) relative to |
| 62246 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 62247 | | Matrix rotation and translation |
| 62248 | | 0.59385384 0.37940106 0.70950155 225.98248456 |
| 62249 | | -0.07085124 -0.85375028 0.51583967 250.98962919 |
| 62250 | | 0.80144726 -0.35660244 -0.48012184 261.48337883 |
| 62251 | | Axis -0.88476585 -0.09324450 -0.45661237 |
| 62252 | | Axis point 0.00000000 129.22894867 39.79401808 |
| 62253 | | Rotation angle (degrees) 150.45970162 |
| 62254 | | Shift along axis -342.74153332 |
| 62255 | | |
| 62256 | | |
| 62257 | | > fitmap #45 inMap #1 |
| 62258 | | |
| 62259 | | Fit molecule 20240711_copi_golph3_beta_M1-H311_K660-A710.cif (#45) to map |
| 62260 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2879 atoms |
| 62261 | | average map value = 0.01059, steps = 44 |
| 62262 | | shifted from previous position = 0.0064 |
| 62263 | | rotated from previous position = 0.0264 degrees |
| 62264 | | atoms outside contour = 1288, contour level = 0.0073613 |
| 62265 | | |
| 62266 | | Position of 20240711_copi_golph3_beta_M1-H311_K660-A710.cif (#45) relative to |
| 62267 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 62268 | | Matrix rotation and translation |
| 62269 | | 0.59360615 0.37954711 0.70963069 225.97882798 |
| 62270 | | -0.07109608 -0.85361527 0.51602937 250.98864595 |
| 62271 | | 0.80160906 -0.35677017 -0.47972697 261.50497336 |
| 62272 | | Axis -0.88468172 -0.09323055 -0.45677819 |
| 62273 | | Axis point 0.00000000 129.23274682 39.75680712 |
| 62274 | | Rotation angle (degrees) 150.44330889 |
| 62275 | | Shift along axis -342.76891558 |
| 62276 | | |
| 62277 | | |
| 62278 | | > show #!40 models |
| 62279 | | |
| 62280 | | > hide #!1 models |
| 62281 | | |
| 62282 | | > hide #34.7 models |
| 62283 | | |
| 62284 | | > show #!43 models |
| 62285 | | |
| 62286 | | > hide #!40 models |
| 62287 | | |
| 62288 | | > show #!40 models |
| 62289 | | |
| 62290 | | > hide #!40 models |
| 62291 | | |
| 62292 | | > show #!40 models |
| 62293 | | |
| 62294 | | > hide #!40 models |
| 62295 | | |
| 62296 | | > show #!40 models |
| 62297 | | |
| 62298 | | > fitmap #40 inMap #1 |
| 62299 | | |
| 62300 | | Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map |
| 62301 | | relion_locres_filtered_20240326_GT.mrc (#1) using 39508 atoms |
| 62302 | | average map value = 0.005223, steps = 144 |
| 62303 | | shifted from previous position = 8 |
| 62304 | | rotated from previous position = 9.35 degrees |
| 62305 | | atoms outside contour = 28718, contour level = 0.0073613 |
| 62306 | | |
| 62307 | | Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) |
| 62308 | | relative to relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 62309 | | Matrix rotation and translation |
| 62310 | | -0.52035327 0.84085371 0.14898840 220.06435873 |
| 62311 | | 0.84298688 0.53366200 -0.06766092 260.64248984 |
| 62312 | | -0.13640238 0.09038768 -0.98652140 268.85959648 |
| 62313 | | Axis 0.48445666 0.87479082 0.00653869 |
| 62314 | | Axis point 50.37526868 0.00000000 130.77574819 |
| 62315 | | Rotation angle (degrees) 170.61199384 |
| 62316 | | Shift along axis 336.37729411 |
| 62317 | | |
| 62318 | | |
| 62319 | | > show #!1 models |
| 62320 | | |
| 62321 | | > hide #!40 models |
| 62322 | | |
| 62323 | | > show #!40 models |
| 62324 | | |
| 62325 | | > hide #!40 models |
| 62326 | | |
| 62327 | | > show #!40 models |
| 62328 | | |
| 62329 | | > hide #!40 models |
| 62330 | | |
| 62331 | | > show #34.1 models |
| 62332 | | |
| 62333 | | > hide #!43 models |
| 62334 | | |
| 62335 | | > show #!43 models |
| 62336 | | |
| 62337 | | > hide #!43 models |
| 62338 | | |
| 62339 | | > show #!43 models |
| 62340 | | |
| 62341 | | > show #!40 models |
| 62342 | | |
| 62343 | | > hide #!40 models |
| 62344 | | |
| 62345 | | > show #!40 models |
| 62346 | | |
| 62347 | | > hide #!43 models |
| 62348 | | |
| 62349 | | > hide #!40 models |
| 62350 | | |
| 62351 | | > show #!40 models |
| 62352 | | |
| 62353 | | > hide #!40 models |
| 62354 | | |
| 62355 | | > show #!40 models |
| 62356 | | |
| 62357 | | > hide #!40 models |
| 62358 | | |
| 62359 | | > hide #34.1 models |
| 62360 | | |
| 62361 | | > hide #!1 models |
| 62362 | | |
| 62363 | | > show #34.7 models |
| 62364 | | |
| 62365 | | > combine #34.7 |
| 62366 | | |
| 62367 | | > hide #46 models |
| 62368 | | |
| 62369 | | > show #46 models |
| 62370 | | |
| 62371 | | > hide #46 models |
| 62372 | | |
| 62373 | | > show #46 models |
| 62374 | | |
| 62375 | | > fitmap #46 inMap #1 |
| 62376 | | |
| 62377 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif G (#46) to map |
| 62378 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2130 atoms |
| 62379 | | average map value = 0.007774, steps = 64 |
| 62380 | | shifted from previous position = 0.0353 |
| 62381 | | rotated from previous position = 0.0322 degrees |
| 62382 | | atoms outside contour = 1201, contour level = 0.0073613 |
| 62383 | | |
| 62384 | | Position of copy of fold_20240711_copi_golph3_model_0.cif G (#46) relative to |
| 62385 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 62386 | | Matrix rotation and translation |
| 62387 | | 0.60593369 0.38236496 0.69759688 225.81172809 |
| 62388 | | -0.05311428 -0.85550993 0.51505498 251.49986226 |
| 62389 | | 0.79374003 -0.34914152 -0.49807324 260.96387774 |
| 62390 | | Axis -0.88865037 -0.09886368 -0.44780184 |
| 62391 | | Axis point 0.00000000 128.90476162 41.80977945 |
| 62392 | | Rotation angle (degrees) 150.90618802 |
| 62393 | | Shift along axis -342.39198394 |
| 62394 | | |
| 62395 | | |
| 62396 | | > show #!1 models |
| 62397 | | |
| 62398 | | > hide #!1 models |
| 62399 | | |
| 62400 | | > rename #46 20240711_copi_golph3_delta.cif |
| 62401 | | |
| 62402 | | > rename #46 20240711_copi_golph3_delta_M1-S273.cif |
| 62403 | | |
| 62404 | | > show #!45 models |
| 62405 | | |
| 62406 | | > hide #!45 models |
| 62407 | | |
| 62408 | | > show #!45 models |
| 62409 | | |
| 62410 | | > show #!1 models |
| 62411 | | |
| 62412 | | > hide #34.7 models |
| 62413 | | |
| 62414 | | > hide #46 models |
| 62415 | | |
| 62416 | | > hide #!45 models |
| 62417 | | |
| 62418 | | > hide #!1 models |
| 62419 | | |
| 62420 | | > combine #34.8 |
| 62421 | | |
| 62422 | | [Repeated 2 time(s)] |
| 62423 | | |
| 62424 | | > hide #48 models |
| 62425 | | |
| 62426 | | > hide #49 models |
| 62427 | | |
| 62428 | | > fitmap #47 inMap #1 |
| 62429 | | |
| 62430 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif H (#47) to map |
| 62431 | | relion_locres_filtered_20240326_GT.mrc (#1) using 4752 atoms |
| 62432 | | average map value = 0.007743, steps = 124 |
| 62433 | | shifted from previous position = 0.0191 |
| 62434 | | rotated from previous position = 0.0392 degrees |
| 62435 | | atoms outside contour = 2924, contour level = 0.0073613 |
| 62436 | | |
| 62437 | | Position of copy of fold_20240711_copi_golph3_model_0.cif H (#47) relative to |
| 62438 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 62439 | | Matrix rotation and translation |
| 62440 | | 0.60757687 0.39435331 0.68944602 230.62659179 |
| 62441 | | -0.16054833 -0.78913935 0.59286029 257.82317050 |
| 62442 | | 0.77786540 -0.47089761 -0.41615005 262.55404626 |
| 62443 | | Axis -0.88422199 -0.07349639 -0.46124803 |
| 62444 | | Axis point 0.00000000 138.97213742 27.15377344 |
| 62445 | | Rotation angle (degrees) 143.02102194 |
| 62446 | | Shift along axis -343.97671300 |
| 62447 | | |
| 62448 | | Drag select of 5 residues |
| 62449 | | |
| 62450 | | > select up |
| 62451 | | |
| 62452 | | 227 atoms, 230 bonds, 31 residues, 1 model selected |
| 62453 | | |
| 62454 | | > delete sel |
| 62455 | | |
| 62456 | | Drag select of 54 residues |
| 62457 | | |
| 62458 | | > select up |
| 62459 | | |
| 62460 | | 479 atoms, 486 bonds, 60 residues, 1 model selected |
| 62461 | | |
| 62462 | | > delete sel |
| 62463 | | |
| 62464 | | > show #!1 models |
| 62465 | | |
| 62466 | | > fitmap #47 inMap #1 |
| 62467 | | |
| 62468 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif H (#47) to map |
| 62469 | | relion_locres_filtered_20240326_GT.mrc (#1) using 4046 atoms |
| 62470 | | average map value = 0.007971, steps = 104 |
| 62471 | | shifted from previous position = 0.284 |
| 62472 | | rotated from previous position = 0.641 degrees |
| 62473 | | atoms outside contour = 2487, contour level = 0.0073613 |
| 62474 | | |
| 62475 | | Position of copy of fold_20240711_copi_golph3_model_0.cif H (#47) relative to |
| 62476 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 62477 | | Matrix rotation and translation |
| 62478 | | 0.60948011 0.40184910 0.68341151 230.98340907 |
| 62479 | | -0.15038863 -0.78776834 0.59733098 257.45116911 |
| 62480 | | 0.77840687 -0.46683868 -0.41969560 262.45085439 |
| 62481 | | Axis -0.88482933 -0.07898616 -0.45917127 |
| 62482 | | Axis point 0.00000000 138.04760312 27.81377692 |
| 62483 | | Rotation angle (degrees) 143.03394478 |
| 62484 | | Shift along axis -345.22586461 |
| 62485 | | |
| 62486 | | |
| 62487 | | > hide #!1 models |
| 62488 | | |
| 62489 | | Drag select of 103 residues |
| 62490 | | |
| 62491 | | > select down |
| 62492 | | |
| 62493 | | 819 atoms, 103 residues, 1 model selected |
| 62494 | | |
| 62495 | | > select up |
| 62496 | | |
| 62497 | | 859 atoms, 872 bonds, 108 residues, 1 model selected |
| 62498 | | |
| 62499 | | > delete sel |
| 62500 | | |
| 62501 | | > fitmap #47 inMap #1 |
| 62502 | | |
| 62503 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif H (#47) to map |
| 62504 | | relion_locres_filtered_20240326_GT.mrc (#1) using 3187 atoms |
| 62505 | | average map value = 0.007182, steps = 116 |
| 62506 | | shifted from previous position = 2.92 |
| 62507 | | rotated from previous position = 6.31 degrees |
| 62508 | | atoms outside contour = 2018, contour level = 0.0073613 |
| 62509 | | |
| 62510 | | Position of copy of fold_20240711_copi_golph3_model_0.cif H (#47) relative to |
| 62511 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 62512 | | Matrix rotation and translation |
| 62513 | | 0.66603189 0.42601441 0.61230160 234.45007200 |
| 62514 | | -0.06317257 -0.78569984 0.61537386 254.56011043 |
| 62515 | | 0.74324340 -0.44853928 -0.49638872 264.42690822 |
| 62516 | | Axis -0.90293190 -0.11112893 -0.41516785 |
| 62517 | | Axis point 0.00000000 134.36385127 39.39423841 |
| 62518 | | Rotation angle (degrees) 143.90373958 |
| 62519 | | Shift along axis -349.76299266 |
| 62520 | | |
| 62521 | | |
| 62522 | | > show #!1 models |
| 62523 | | |
| 62524 | | > hide #!1 models |
| 62525 | | |
| 62526 | | Drag select of 69 residues |
| 62527 | | |
| 62528 | | > select up |
| 62529 | | |
| 62530 | | 709 atoms, 716 bonds, 91 residues, 1 model selected |
| 62531 | | Drag select of 93 residues |
| 62532 | | |
| 62533 | | > select up |
| 62534 | | |
| 62535 | | 826 atoms, 833 bonds, 108 residues, 1 model selected |
| 62536 | | |
| 62537 | | > delete sel |
| 62538 | | |
| 62539 | | > select clear |
| 62540 | | |
| 62541 | | Drag select of 2 residues |
| 62542 | | |
| 62543 | | > delete sel |
| 62544 | | |
| 62545 | | Drag select of 22 residues |
| 62546 | | |
| 62547 | | > select up |
| 62548 | | |
| 62549 | | 180 atoms, 182 bonds, 23 residues, 1 model selected |
| 62550 | | |
| 62551 | | > delete sel |
| 62552 | | |
| 62553 | | > show #!1 models |
| 62554 | | |
| 62555 | | > fitmap #47 inMap #1 |
| 62556 | | |
| 62557 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif H (#47) to map |
| 62558 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2162 atoms |
| 62559 | | average map value = 0.0089, steps = 104 |
| 62560 | | shifted from previous position = 7.41 |
| 62561 | | rotated from previous position = 15.8 degrees |
| 62562 | | atoms outside contour = 1181, contour level = 0.0073613 |
| 62563 | | |
| 62564 | | Position of copy of fold_20240711_copi_golph3_model_0.cif H (#47) relative to |
| 62565 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 62566 | | Matrix rotation and translation |
| 62567 | | 0.81943643 0.23081206 0.52464247 241.33474078 |
| 62568 | | -0.08568686 -0.85571732 0.51029955 263.44202167 |
| 62569 | | 0.56672894 -0.46311301 -0.68142839 275.80845765 |
| 62570 | | Axis -0.95019103 -0.04108247 -0.30894859 |
| 62571 | | Axis point 0.00000000 151.92138588 62.40884770 |
| 62572 | | Rotation angle (degrees) 149.18822401 |
| 62573 | | Shift along axis -325.34758904 |
| 62574 | | |
| 62575 | | |
| 62576 | | > hide #!1 models |
| 62577 | | |
| 62578 | | > show #!21 models |
| 62579 | | |
| 62580 | | > hide #!21 models |
| 62581 | | |
| 62582 | | > show #!18 models |
| 62583 | | |
| 62584 | | > hide #!18 models |
| 62585 | | |
| 62586 | | > show #!29 models |
| 62587 | | |
| 62588 | | > hide #!29 models |
| 62589 | | |
| 62590 | | > show #!26.2 models |
| 62591 | | |
| 62592 | | > ui tool show Matchmaker |
| 62593 | | |
| 62594 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 62595 | | QTBUG which explains how to reproduce. |
| 62596 | | |
| 62597 | | > matchmaker #!47 to #26.2 |
| 62598 | | |
| 62599 | | Parameters |
| 62600 | | --- |
| 62601 | | Chain pairing | bb |
| 62602 | | Alignment algorithm | Needleman-Wunsch |
| 62603 | | Similarity matrix | BLOSUM-62 |
| 62604 | | SS fraction | 0.3 |
| 62605 | | Gap open (HH/SS/other) | 18/18/6 |
| 62606 | | Gap extend | 1 |
| 62607 | | SS matrix | | | H | S | O |
| 62608 | | ---|---|---|--- |
| 62609 | | H | 6 | -9 | -6 |
| 62610 | | S | | 6 | -6 |
| 62611 | | O | | | 4 |
| 62612 | | Iteration cutoff | 2 |
| 62613 | | |
| 62614 | | Matchmaker 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B, chain B (#26.2) with |
| 62615 | | copy of fold_20240711_copi_golph3_model_0.cif H, chain H (#47), sequence |
| 62616 | | alignment score = 1218.4 |
| 62617 | | RMSD between 231 pruned atom pairs is 0.343 angstroms; (across all 249 pairs: |
| 62618 | | 2.083) |
| 62619 | | |
| 62620 | | |
| 62621 | | > hide #!47 models |
| 62622 | | |
| 62623 | | > show #!47 models |
| 62624 | | |
| 62625 | | > show #!1 models |
| 62626 | | |
| 62627 | | > hide #!1 models |
| 62628 | | |
| 62629 | | > show #!1 models |
| 62630 | | |
| 62631 | | > hide #!1 models |
| 62632 | | |
| 62633 | | > show #!1 models |
| 62634 | | |
| 62635 | | > hide #!1 models |
| 62636 | | |
| 62637 | | > show #48 models |
| 62638 | | |
| 62639 | | > hide #!47 models |
| 62640 | | |
| 62641 | | > hide #48 models |
| 62642 | | |
| 62643 | | > show #34.8 models |
| 62644 | | |
| 62645 | | > hide #34.8 models |
| 62646 | | |
| 62647 | | > show #!29 models |
| 62648 | | |
| 62649 | | > hide #!29 models |
| 62650 | | |
| 62651 | | > hide #!26.2 models |
| 62652 | | |
| 62653 | | > show #!26.2 models |
| 62654 | | |
| 62655 | | > show #!47 models |
| 62656 | | |
| 62657 | | > hide #!47 models |
| 62658 | | |
| 62659 | | > show #!47 models |
| 62660 | | |
| 62661 | | > hide #!47 models |
| 62662 | | |
| 62663 | | > show #!47 models |
| 62664 | | |
| 62665 | | > hide #!47 models |
| 62666 | | |
| 62667 | | > show #!47 models |
| 62668 | | |
| 62669 | | > hide #!47 models |
| 62670 | | |
| 62671 | | > show #!47 models |
| 62672 | | |
| 62673 | | > hide #!26.2 models |
| 62674 | | |
| 62675 | | > fitmap #47 inMap #1 |
| 62676 | | |
| 62677 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif H (#47) to map |
| 62678 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2162 atoms |
| 62679 | | average map value = 0.01194, steps = 48 |
| 62680 | | shifted from previous position = 0.11 |
| 62681 | | rotated from previous position = 0.562 degrees |
| 62682 | | atoms outside contour = 875, contour level = 0.0073613 |
| 62683 | | |
| 62684 | | Position of copy of fold_20240711_copi_golph3_model_0.cif H (#47) relative to |
| 62685 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 62686 | | Matrix rotation and translation |
| 62687 | | 0.70971931 0.58971035 0.38540915 247.36545771 |
| 62688 | | 0.22219868 -0.70653520 0.67188969 250.98140616 |
| 62689 | | 0.66852543 -0.39121568 -0.63247453 271.39793443 |
| 62690 | | Axis -0.91653394 -0.24408275 -0.31684246 |
| 62691 | | Axis point 0.00000000 119.21261675 65.09791303 |
| 62692 | | Rotation angle (degrees) 144.55229672 |
| 62693 | | Shift along axis -373.96945993 |
| 62694 | | |
| 62695 | | |
| 62696 | | > fitmap #47 inMap #1 |
| 62697 | | |
| 62698 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif H (#47) to map |
| 62699 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2162 atoms |
| 62700 | | average map value = 0.01194, steps = 40 |
| 62701 | | shifted from previous position = 0.00676 |
| 62702 | | rotated from previous position = 0.0205 degrees |
| 62703 | | atoms outside contour = 878, contour level = 0.0073613 |
| 62704 | | |
| 62705 | | Position of copy of fold_20240711_copi_golph3_model_0.cif H (#47) relative to |
| 62706 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 62707 | | Matrix rotation and translation |
| 62708 | | 0.70954007 0.58999755 0.38529961 247.37542938 |
| 62709 | | 0.22244451 -0.70636110 0.67199140 250.96234102 |
| 62710 | | 0.66863393 -0.39109704 -0.63243321 271.38651874 |
| 62711 | | Axis -0.91647918 -0.24426002 -0.31686424 |
| 62712 | | Axis point 0.00000000 119.17339623 65.09831713 |
| 62713 | | Rotation angle (degrees) 144.55050910 |
| 62714 | | Shift along axis -374.00718183 |
| 62715 | | |
| 62716 | | |
| 62717 | | > show #!26.2 models |
| 62718 | | |
| 62719 | | > hide #!26.2 models |
| 62720 | | |
| 62721 | | > show #!26.2 models |
| 62722 | | |
| 62723 | | > hide #!26.2 models |
| 62724 | | |
| 62725 | | > show #!26.2 models |
| 62726 | | |
| 62727 | | > hide #!26.2 models |
| 62728 | | |
| 62729 | | > show #!26.2 models |
| 62730 | | |
| 62731 | | > hide #!26.2 models |
| 62732 | | |
| 62733 | | > show #!1 models |
| 62734 | | |
| 62735 | | > hide #!1 models |
| 62736 | | |
| 62737 | | > ui tool show Matchmaker |
| 62738 | | |
| 62739 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 62740 | | QTBUG which explains how to reproduce. |
| 62741 | | |
| 62742 | | > matchmaker #48 to #47 |
| 62743 | | |
| 62744 | | Parameters |
| 62745 | | --- |
| 62746 | | Chain pairing | bb |
| 62747 | | Alignment algorithm | Needleman-Wunsch |
| 62748 | | Similarity matrix | BLOSUM-62 |
| 62749 | | SS fraction | 0.3 |
| 62750 | | Gap open (HH/SS/other) | 18/18/6 |
| 62751 | | Gap extend | 1 |
| 62752 | | SS matrix | | | H | S | O |
| 62753 | | ---|---|---|--- |
| 62754 | | H | 6 | -9 | -6 |
| 62755 | | S | | 6 | -6 |
| 62756 | | O | | | 4 |
| 62757 | | Iteration cutoff | 2 |
| 62758 | | |
| 62759 | | Matchmaker copy of fold_20240711_copi_golph3_model_0.cif H, chain H (#47) with |
| 62760 | | copy of fold_20240711_copi_golph3_model_0.cif H, chain H (#48), sequence |
| 62761 | | alignment score = 2607.1 |
| 62762 | | RMSD between 277 pruned atom pairs is 0.000 angstroms; (across all 277 pairs: |
| 62763 | | 0.000) |
| 62764 | | |
| 62765 | | |
| 62766 | | > show #48 models |
| 62767 | | |
| 62768 | | > show #!1 models |
| 62769 | | |
| 62770 | | > hide #!1 models |
| 62771 | | |
| 62772 | | > hide #!47 models |
| 62773 | | |
| 62774 | | > show #!47 models |
| 62775 | | |
| 62776 | | > hide #48 models |
| 62777 | | |
| 62778 | | > show #48 models |
| 62779 | | |
| 62780 | | > show #!1 models |
| 62781 | | |
| 62782 | | > hide #!1 models |
| 62783 | | |
| 62784 | | > hide #!47 models |
| 62785 | | |
| 62786 | | > show #!47 models |
| 62787 | | |
| 62788 | | > hide #!47 models |
| 62789 | | |
| 62790 | | > show #!47 models |
| 62791 | | |
| 62792 | | Drag select of 86 residues |
| 62793 | | |
| 62794 | | > delete sel |
| 62795 | | |
| 62796 | | > hide #!47 models |
| 62797 | | |
| 62798 | | > show #!47 models |
| 62799 | | |
| 62800 | | Drag select of 151 residues, 2 pseudobonds |
| 62801 | | |
| 62802 | | > delete sel |
| 62803 | | |
| 62804 | | Drag select of 1 pseudobonds |
| 62805 | | |
| 62806 | | > delete sel |
| 62807 | | |
| 62808 | | [Repeated 1 time(s)] |
| 62809 | | |
| 62810 | | > select add #48 |
| 62811 | | |
| 62812 | | 2885 atoms, 2926 bonds, 2 pseudobonds, 372 residues, 2 models selected |
| 62813 | | |
| 62814 | | > select subtract #48 |
| 62815 | | |
| 62816 | | Nothing selected |
| 62817 | | Drag select of 20 residues, 2 pseudobonds |
| 62818 | | |
| 62819 | | > \ |
| 62820 | | |
| 62821 | | Unknown command: \ |
| 62822 | | |
| 62823 | | > delete sel |
| 62824 | | |
| 62825 | | > select clear |
| 62826 | | |
| 62827 | | [Repeated 1 time(s)]Drag select of 1 pseudobonds |
| 62828 | | |
| 62829 | | > delete sel |
| 62830 | | |
| 62831 | | > close #48 |
| 62832 | | |
| 62833 | | > combine #34.8 |
| 62834 | | |
| 62835 | | > ui tool show Matchmaker |
| 62836 | | |
| 62837 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 62838 | | QTBUG which explains how to reproduce. |
| 62839 | | |
| 62840 | | > matchmaker #48 to #47 |
| 62841 | | |
| 62842 | | Parameters |
| 62843 | | --- |
| 62844 | | Chain pairing | bb |
| 62845 | | Alignment algorithm | Needleman-Wunsch |
| 62846 | | Similarity matrix | BLOSUM-62 |
| 62847 | | SS fraction | 0.3 |
| 62848 | | Gap open (HH/SS/other) | 18/18/6 |
| 62849 | | Gap extend | 1 |
| 62850 | | SS matrix | | | H | S | O |
| 62851 | | ---|---|---|--- |
| 62852 | | H | 6 | -9 | -6 |
| 62853 | | S | | 6 | -6 |
| 62854 | | O | | | 4 |
| 62855 | | Iteration cutoff | 2 |
| 62856 | | |
| 62857 | | Matchmaker copy of fold_20240711_copi_golph3_model_0.cif H, chain H (#47) with |
| 62858 | | copy of fold_20240711_copi_golph3_model_0.cif H, chain H (#48), sequence |
| 62859 | | alignment score = 2607.1 |
| 62860 | | RMSD between 277 pruned atom pairs is 0.000 angstroms; (across all 277 pairs: |
| 62861 | | 0.000) |
| 62862 | | |
| 62863 | | Drag select of 6 residues |
| 62864 | | |
| 62865 | | > select up |
| 62866 | | |
| 62867 | | 227 atoms, 230 bonds, 31 residues, 1 model selected |
| 62868 | | |
| 62869 | | > delete sel |
| 62870 | | |
| 62871 | | Drag select of 28 residues |
| 62872 | | |
| 62873 | | > delete sel |
| 62874 | | |
| 62875 | | Drag select of 119 residues |
| 62876 | | |
| 62877 | | > select up |
| 62878 | | |
| 62879 | | 4305 atoms, 4371 bonds, 550 residues, 1 model selected |
| 62880 | | |
| 62881 | | > select down |
| 62882 | | |
| 62883 | | 947 atoms, 119 residues, 1 model selected |
| 62884 | | |
| 62885 | | > delete sel |
| 62886 | | |
| 62887 | | > hide #!47 models |
| 62888 | | |
| 62889 | | > show #!47 models |
| 62890 | | |
| 62891 | | Drag select of 38 residues |
| 62892 | | |
| 62893 | | > select up |
| 62894 | | |
| 62895 | | 334 atoms, 339 bonds, 41 residues, 1 model selected |
| 62896 | | |
| 62897 | | > delete sel |
| 62898 | | |
| 62899 | | Drag select of 57 residues |
| 62900 | | |
| 62901 | | > select up |
| 62902 | | |
| 62903 | | 542 atoms, 545 bonds, 72 residues, 1 model selected |
| 62904 | | |
| 62905 | | > delete sel |
| 62906 | | |
| 62907 | | > hide #!47 models |
| 62908 | | |
| 62909 | | > show #!47 models |
| 62910 | | |
| 62911 | | > hide #!47 models |
| 62912 | | |
| 62913 | | > show #!47 models |
| 62914 | | |
| 62915 | | > hide #48 models |
| 62916 | | |
| 62917 | | > show #48 models |
| 62918 | | |
| 62919 | | > hide #48 models |
| 62920 | | |
| 62921 | | > show #48 models |
| 62922 | | |
| 62923 | | Drag select of 6 residues |
| 62924 | | |
| 62925 | | > select up |
| 62926 | | |
| 62927 | | 140 atoms, 141 bonds, 18 residues, 1 model selected |
| 62928 | | |
| 62929 | | > delete sel |
| 62930 | | |
| 62931 | | > hide #!47 models |
| 62932 | | |
| 62933 | | > show #!47 models |
| 62934 | | |
| 62935 | | > hide #48 models |
| 62936 | | |
| 62937 | | > show #48 models |
| 62938 | | |
| 62939 | | > hide #48 models |
| 62940 | | |
| 62941 | | > show #46 models |
| 62942 | | |
| 62943 | | > hide #!47 models |
| 62944 | | |
| 62945 | | > hide #46 models |
| 62946 | | |
| 62947 | | > show #46 models |
| 62948 | | |
| 62949 | | > hide #46 models |
| 62950 | | |
| 62951 | | > show #!47 models |
| 62952 | | |
| 62953 | | > show #48 models |
| 62954 | | |
| 62955 | | > hide #48 models |
| 62956 | | |
| 62957 | | > hide #!47 models |
| 62958 | | |
| 62959 | | > show #!47 models |
| 62960 | | |
| 62961 | | > show #48 models |
| 62962 | | |
| 62963 | | > hide #48 models |
| 62964 | | |
| 62965 | | > show #48 models |
| 62966 | | |
| 62967 | | > close #47 |
| 62968 | | |
| 62969 | | > combine #34.8 |
| 62970 | | |
| 62971 | | > hide #47 models |
| 62972 | | |
| 62973 | | > show #!1 models |
| 62974 | | |
| 62975 | | > fitmap #48 inMap #1 |
| 62976 | | |
| 62977 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif H (#48) to map |
| 62978 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2342 atoms |
| 62979 | | average map value = 0.01138, steps = 60 |
| 62980 | | shifted from previous position = 0.0651 |
| 62981 | | rotated from previous position = 0.195 degrees |
| 62982 | | atoms outside contour = 1014, contour level = 0.0073613 |
| 62983 | | |
| 62984 | | Position of copy of fold_20240711_copi_golph3_model_0.cif H (#48) relative to |
| 62985 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 62986 | | Matrix rotation and translation |
| 62987 | | 0.71115890 0.58912332 0.38364923 247.39861189 |
| 62988 | | 0.22410392 -0.70720387 0.67055210 250.94518669 |
| 62989 | | 0.66635610 -0.39089180 -0.63495917 271.61936050 |
| 62990 | | Axis -0.91700758 -0.24423744 -0.31534927 |
| 62991 | | Axis point 0.00000000 119.24873787 65.52138932 |
| 62992 | | Rotation angle (degrees) 144.63703576 |
| 62993 | | Shift along axis -373.81158195 |
| 62994 | | |
| 62995 | | |
| 62996 | | > fitmap #48 inMap #1 |
| 62997 | | |
| 62998 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif H (#48) to map |
| 62999 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2342 atoms |
| 63000 | | average map value = 0.01138, steps = 40 |
| 63001 | | shifted from previous position = 0.0265 |
| 63002 | | rotated from previous position = 0.0312 degrees |
| 63003 | | atoms outside contour = 1014, contour level = 0.0073613 |
| 63004 | | |
| 63005 | | Position of copy of fold_20240711_copi_golph3_model_0.cif H (#48) relative to |
| 63006 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 63007 | | Matrix rotation and translation |
| 63008 | | 0.71140727 0.58868677 0.38385881 247.37086149 |
| 63009 | | 0.22374794 -0.70750308 0.67035532 250.99066812 |
| 63010 | | 0.66621060 -0.39100802 -0.63504028 271.62910057 |
| 63011 | | Axis -0.91708532 -0.24396987 -0.31533033 |
| 63012 | | Axis point 0.00000000 119.31297346 65.51699851 |
| 63013 | | Rotation angle (degrees) 144.64356816 |
| 63014 | | Shift along axis -373.74723998 |
| 63015 | | |
| 63016 | | |
| 63017 | | > fitmap #48 inMap #1 |
| 63018 | | |
| 63019 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif H (#48) to map |
| 63020 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2342 atoms |
| 63021 | | average map value = 0.01138, steps = 28 |
| 63022 | | shifted from previous position = 0.0378 |
| 63023 | | rotated from previous position = 0.0647 degrees |
| 63024 | | atoms outside contour = 1014, contour level = 0.0073613 |
| 63025 | | |
| 63026 | | Position of copy of fold_20240711_copi_golph3_model_0.cif H (#48) relative to |
| 63027 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 63028 | | Matrix rotation and translation |
| 63029 | | 0.71085766 0.58959184 0.38348773 247.41765408 |
| 63030 | | 0.22438320 -0.70685733 0.67082405 250.91144646 |
| 63031 | | 0.66658350 -0.39081221 -0.63476945 271.59805846 |
| 63032 | | Axis -0.91691149 -0.24450348 -0.31542253 |
| 63033 | | Axis point 0.00000000 119.19010859 65.50641851 |
| 63034 | | Rotation angle (degrees) 144.62540379 |
| 63035 | | Shift along axis -373.87695812 |
| 63036 | | |
| 63037 | | |
| 63038 | | > fitmap #48 inMap #1 |
| 63039 | | |
| 63040 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif H (#48) to map |
| 63041 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2342 atoms |
| 63042 | | average map value = 0.01138, steps = 36 |
| 63043 | | shifted from previous position = 0.0123 |
| 63044 | | rotated from previous position = 0.0407 degrees |
| 63045 | | atoms outside contour = 1014, contour level = 0.0073613 |
| 63046 | | |
| 63047 | | Position of copy of fold_20240711_copi_golph3_model_0.cif H (#48) relative to |
| 63048 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 63049 | | Matrix rotation and translation |
| 63050 | | 0.71124414 0.58902886 0.38363626 247.39861223 |
| 63051 | | 0.22405044 -0.70725020 0.67052111 250.94807788 |
| 63052 | | 0.66628311 -0.39095033 -0.63499973 271.62700923 |
| 63053 | | Axis -0.91703322 -0.24418608 -0.31531450 |
| 63054 | | Axis point 0.00000000 119.26151546 65.52755174 |
| 63055 | | Rotation angle (degrees) 144.63711740 |
| 63056 | | Shift along axis -373.79870608 |
| 63057 | | |
| 63058 | | |
| 63059 | | > hide #!1 models |
| 63060 | | |
| 63061 | | Drag select of 1 residues |
| 63062 | | |
| 63063 | | > delete |
| 63064 | | |
| 63065 | | Missing or invalid "atoms" argument: empty atom specifier |
| 63066 | | |
| 63067 | | > delete sel |
| 63068 | | |
| 63069 | | > show #!1 models |
| 63070 | | |
| 63071 | | > hide #!1 models |
| 63072 | | |
| 63073 | | > rename #48 20240711_copi_golph3_gamma1_M1-.cif |
| 63074 | | |
| 63075 | | > rename #48 20240711_copi_golph3_gamma1_M1-P299.cif |
| 63076 | | |
| 63077 | | > hide #48 models |
| 63078 | | |
| 63079 | | > show #48 models |
| 63080 | | |
| 63081 | | > show #47 models |
| 63082 | | |
| 63083 | | > hide #47 models |
| 63084 | | |
| 63085 | | > show #49 models |
| 63086 | | |
| 63087 | | > hide #49 models |
| 63088 | | |
| 63089 | | > show #47 models |
| 63090 | | |
| 63091 | | > hide #48 models |
| 63092 | | |
| 63093 | | > fitmap #47 inMap #1 |
| 63094 | | |
| 63095 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif H (#47) to map |
| 63096 | | relion_locres_filtered_20240326_GT.mrc (#1) using 4752 atoms |
| 63097 | | average map value = 0.007743, steps = 124 |
| 63098 | | shifted from previous position = 0.0191 |
| 63099 | | rotated from previous position = 0.0392 degrees |
| 63100 | | atoms outside contour = 2924, contour level = 0.0073613 |
| 63101 | | |
| 63102 | | Position of copy of fold_20240711_copi_golph3_model_0.cif H (#47) relative to |
| 63103 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 63104 | | Matrix rotation and translation |
| 63105 | | 0.60757687 0.39435331 0.68944602 230.62659179 |
| 63106 | | -0.16054833 -0.78913935 0.59286029 257.82317050 |
| 63107 | | 0.77786540 -0.47089761 -0.41615005 262.55404626 |
| 63108 | | Axis -0.88422199 -0.07349639 -0.46124803 |
| 63109 | | Axis point 0.00000000 138.97213742 27.15377344 |
| 63110 | | Rotation angle (degrees) 143.02102194 |
| 63111 | | Shift along axis -343.97671300 |
| 63112 | | |
| 63113 | | |
| 63114 | | > show #49 models |
| 63115 | | |
| 63116 | | > fitmap #47 inMap #1 |
| 63117 | | |
| 63118 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif H (#47) to map |
| 63119 | | relion_locres_filtered_20240326_GT.mrc (#1) using 4752 atoms |
| 63120 | | average map value = 0.007743, steps = 104 |
| 63121 | | shifted from previous position = 0.00703 |
| 63122 | | rotated from previous position = 0.0108 degrees |
| 63123 | | atoms outside contour = 2927, contour level = 0.0073613 |
| 63124 | | |
| 63125 | | Position of copy of fold_20240711_copi_golph3_model_0.cif H (#47) relative to |
| 63126 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 63127 | | Matrix rotation and translation |
| 63128 | | 0.60743054 0.39443811 0.68952644 230.63380408 |
| 63129 | | -0.16056711 -0.78913122 0.59286602 257.82805616 |
| 63130 | | 0.77797580 -0.47084019 -0.41600861 262.54601287 |
| 63131 | | Axis -0.88417588 -0.07352104 -0.46133249 |
| 63132 | | Axis point 0.00000000 138.96283890 27.13220472 |
| 63133 | | Rotation angle (degrees) 143.02086830 |
| 63134 | | Shift along axis -343.99763979 |
| 63135 | | |
| 63136 | | |
| 63137 | | > hide #49 models |
| 63138 | | |
| 63139 | | Drag select of 50 residues |
| 63140 | | |
| 63141 | | > select up |
| 63142 | | |
| 63143 | | 618 atoms, 629 bonds, 78 residues, 1 model selected |
| 63144 | | |
| 63145 | | > delete sel |
| 63146 | | |
| 63147 | | Drag select of 83 residues |
| 63148 | | |
| 63149 | | > select up |
| 63150 | | |
| 63151 | | 690 atoms, 696 bonds, 90 residues, 1 model selected |
| 63152 | | |
| 63153 | | > delete sel |
| 63154 | | |
| 63155 | | > show #!1 models |
| 63156 | | |
| 63157 | | > fitmap #47 inMap #1 |
| 63158 | | |
| 63159 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif H (#47) to map |
| 63160 | | relion_locres_filtered_20240326_GT.mrc (#1) using 3444 atoms |
| 63161 | | average map value = 0.008708, steps = 68 |
| 63162 | | shifted from previous position = 0.469 |
| 63163 | | rotated from previous position = 2.57 degrees |
| 63164 | | atoms outside contour = 1900, contour level = 0.0073613 |
| 63165 | | |
| 63166 | | Position of copy of fold_20240711_copi_golph3_model_0.cif H (#47) relative to |
| 63167 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 63168 | | Matrix rotation and translation |
| 63169 | | 0.62018224 0.35375614 0.70016468 228.85507380 |
| 63170 | | -0.18985557 -0.79832412 0.57151856 259.33965078 |
| 63171 | | 0.76113655 -0.48737583 -0.42794386 263.29720774 |
| 63172 | | Axis -0.88845160 -0.05115766 -0.45611035 |
| 63173 | | Axis point 0.00000000 143.49126811 27.87004377 |
| 63174 | | Rotation angle (degrees) 143.42166543 |
| 63175 | | Shift along axis -336.68644741 |
| 63176 | | |
| 63177 | | |
| 63178 | | > fitmap #47 inMap #1 |
| 63179 | | |
| 63180 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif H (#47) to map |
| 63181 | | relion_locres_filtered_20240326_GT.mrc (#1) using 3444 atoms |
| 63182 | | average map value = 0.008708, steps = 96 |
| 63183 | | shifted from previous position = 0.029 |
| 63184 | | rotated from previous position = 0.0136 degrees |
| 63185 | | atoms outside contour = 1901, contour level = 0.0073613 |
| 63186 | | |
| 63187 | | Position of copy of fold_20240711_copi_golph3_model_0.cif H (#47) relative to |
| 63188 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 63189 | | Matrix rotation and translation |
| 63190 | | 0.62021708 0.35362394 0.70020060 228.82245994 |
| 63191 | | -0.18978418 -0.79845951 0.57135311 259.34581465 |
| 63192 | | 0.76112597 -0.48724996 -0.42810599 263.30010916 |
| 63193 | | Axis -0.88847111 -0.05113383 -0.45607502 |
| 63194 | | Axis point 0.00000000 143.49650857 27.90034895 |
| 63195 | | Rotation angle (degrees) 143.43429526 |
| 63196 | | Shift along axis -336.64809142 |
| 63197 | | |
| 63198 | | |
| 63199 | | > hide #!1 models |
| 63200 | | |
| 63201 | | Drag select of 65 residues |
| 63202 | | |
| 63203 | | > select up |
| 63204 | | |
| 63205 | | 597 atoms, 608 bonds, 74 residues, 1 model selected |
| 63206 | | |
| 63207 | | > delete sel |
| 63208 | | |
| 63209 | | Drag select of 21 residues |
| 63210 | | |
| 63211 | | > delete sel |
| 63212 | | |
| 63213 | | Drag select of 17 residues |
| 63214 | | |
| 63215 | | > delete sel |
| 63216 | | |
| 63217 | | Drag select of 18 residues |
| 63218 | | |
| 63219 | | > delete sel |
| 63220 | | |
| 63221 | | > select #47/H:299 |
| 63222 | | |
| 63223 | | 7 atoms, 7 bonds, 1 residue, 1 model selected |
| 63224 | | |
| 63225 | | > delete sel |
| 63226 | | |
| 63227 | | > fitmap #47 inMap #1 |
| 63228 | | |
| 63229 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif H (#47) to map |
| 63230 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2419 atoms |
| 63231 | | average map value = 0.01024, steps = 44 |
| 63232 | | shifted from previous position = 0.284 |
| 63233 | | rotated from previous position = 1.02 degrees |
| 63234 | | atoms outside contour = 1151, contour level = 0.0073613 |
| 63235 | | |
| 63236 | | Position of copy of fold_20240711_copi_golph3_model_0.cif H (#47) relative to |
| 63237 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 63238 | | Matrix rotation and translation |
| 63239 | | 0.62119616 0.36398811 0.69399423 228.98038917 |
| 63240 | | -0.19221934 -0.78776013 0.58522278 259.54027074 |
| 63241 | | 0.75971512 -0.49693726 -0.41938801 263.08595483 |
| 63242 | | Axis -0.88810416 -0.05393564 -0.45646682 |
| 63243 | | Axis point 0.00000000 143.67946123 26.52760116 |
| 63244 | | Rotation angle (degrees) 142.46449868 |
| 63245 | | Shift along axis -337.44691426 |
| 63246 | | |
| 63247 | | |
| 63248 | | > fitmap #47 inMap #1 |
| 63249 | | |
| 63250 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif H (#47) to map |
| 63251 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2419 atoms |
| 63252 | | average map value = 0.01024, steps = 60 |
| 63253 | | shifted from previous position = 0.0143 |
| 63254 | | rotated from previous position = 0.00854 degrees |
| 63255 | | atoms outside contour = 1148, contour level = 0.0073613 |
| 63256 | | |
| 63257 | | Position of copy of fold_20240711_copi_golph3_model_0.cif H (#47) relative to |
| 63258 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 63259 | | Matrix rotation and translation |
| 63260 | | 0.62131237 0.36393339 0.69391889 228.97598227 |
| 63261 | | -0.19220002 -0.78775480 0.58523631 259.54869305 |
| 63262 | | 0.75962496 -0.49698578 -0.41949380 263.07832863 |
| 63263 | | Axis -0.88814013 -0.05392258 -0.45639837 |
| 63264 | | Axis point 0.00000000 143.69008420 26.53435500 |
| 63265 | | Rotation angle (degrees) 142.46375765 |
| 63266 | | Shift along axis -337.42681283 |
| 63267 | | |
| 63268 | | |
| 63269 | | > show #!1 models |
| 63270 | | |
| 63271 | | > hide #!1 models |
| 63272 | | |
| 63273 | | > hide #47 models |
| 63274 | | |
| 63275 | | > show #47 models |
| 63276 | | |
| 63277 | | Drag select of 52 residues |
| 63278 | | |
| 63279 | | > select up |
| 63280 | | |
| 63281 | | 459 atoms, 467 bonds, 61 residues, 1 model selected |
| 63282 | | |
| 63283 | | > delete sel |
| 63284 | | |
| 63285 | | Drag select of 100 residues |
| 63286 | | |
| 63287 | | > delete sel |
| 63288 | | |
| 63289 | | > fitmap #47 inMap #1 |
| 63290 | | |
| 63291 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif H (#47) to map |
| 63292 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1163 atoms |
| 63293 | | average map value = 0.01156, steps = 68 |
| 63294 | | shifted from previous position = 0.58 |
| 63295 | | rotated from previous position = 3.44 degrees |
| 63296 | | atoms outside contour = 468, contour level = 0.0073613 |
| 63297 | | |
| 63298 | | Position of copy of fold_20240711_copi_golph3_model_0.cif H (#47) relative to |
| 63299 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 63300 | | Matrix rotation and translation |
| 63301 | | 0.63759665 0.40239523 0.65692358 230.93358222 |
| 63302 | | -0.14062120 -0.77761789 0.61281000 258.39112625 |
| 63303 | | 0.75742735 -0.48310299 -0.43922126 263.51570190 |
| 63304 | | Axis -0.89302698 -0.08189754 -0.44248798 |
| 63305 | | Axis point 0.00000000 139.97272064 30.35060145 |
| 63306 | | Rotation angle (degrees) 142.15013070 |
| 63307 | | Shift along axis -343.99404715 |
| 63308 | | |
| 63309 | | |
| 63310 | | > show #!1 models |
| 63311 | | |
| 63312 | | > fitmap #47 inMap #1 |
| 63313 | | |
| 63314 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif H (#47) to map |
| 63315 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1163 atoms |
| 63316 | | average map value = 0.01156, steps = 44 |
| 63317 | | shifted from previous position = 0.0398 |
| 63318 | | rotated from previous position = 0.0682 degrees |
| 63319 | | atoms outside contour = 469, contour level = 0.0073613 |
| 63320 | | |
| 63321 | | Position of copy of fold_20240711_copi_golph3_model_0.cif H (#47) relative to |
| 63322 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 63323 | | Matrix rotation and translation |
| 63324 | | 0.63844248 0.40177726 0.65648019 230.94848014 |
| 63325 | | -0.14041420 -0.77782291 0.61259723 258.41035864 |
| 63326 | | 0.75675297 -0.48328724 -0.44017996 263.52900178 |
| 63327 | | Axis -0.89330160 -0.08173657 -0.44196310 |
| 63328 | | Axis point 0.00000000 140.03543333 30.45542839 |
| 63329 | | Rotation angle (degrees) 142.16497515 |
| 63330 | | Shift along axis -343.89831746 |
| 63331 | | |
| 63332 | | |
| 63333 | | > hide #!1 models |
| 63334 | | |
| 63335 | | > rename #47 20240711_copi_golph3_gamma1_K300-F448.cif |
| 63336 | | |
| 63337 | | > show #!29 models |
| 63338 | | |
| 63339 | | > hide #!29 models |
| 63340 | | |
| 63341 | | > show #!29 models |
| 63342 | | |
| 63343 | | > hide #!29 models |
| 63344 | | |
| 63345 | | > show #!26.2 models |
| 63346 | | |
| 63347 | | > hide #!26.2 models |
| 63348 | | |
| 63349 | | > hide #47 models |
| 63350 | | |
| 63351 | | > show #47 models |
| 63352 | | |
| 63353 | | > show #48 models |
| 63354 | | |
| 63355 | | > hide #48 models |
| 63356 | | |
| 63357 | | > show #48 models |
| 63358 | | |
| 63359 | | > hide #48 models |
| 63360 | | |
| 63361 | | > hide #47 models |
| 63362 | | |
| 63363 | | > show #49 models |
| 63364 | | |
| 63365 | | Drag select of 144 residues |
| 63366 | | |
| 63367 | | > select up |
| 63368 | | |
| 63369 | | 1164 atoms, 1180 bonds, 148 residues, 1 model selected |
| 63370 | | |
| 63371 | | > delete sel |
| 63372 | | |
| 63373 | | Drag select of 113 residues |
| 63374 | | |
| 63375 | | > select up |
| 63376 | | |
| 63377 | | 1009 atoms, 1027 bonds, 128 residues, 1 model selected |
| 63378 | | |
| 63379 | | > delete sel |
| 63380 | | |
| 63381 | | Drag select of 109 residues |
| 63382 | | |
| 63383 | | > select up |
| 63384 | | |
| 63385 | | 851 atoms, 860 bonds, 114 residues, 1 model selected |
| 63386 | | |
| 63387 | | > delete sel |
| 63388 | | |
| 63389 | | > fitmap #49 inMap #1 |
| 63390 | | |
| 63391 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif H (#49) to map |
| 63392 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1728 atoms |
| 63393 | | average map value = 0.01048, steps = 52 |
| 63394 | | shifted from previous position = 1.15 |
| 63395 | | rotated from previous position = 3.81 degrees |
| 63396 | | atoms outside contour = 801, contour level = 0.0073613 |
| 63397 | | |
| 63398 | | Position of copy of fold_20240711_copi_golph3_model_0.cif H (#49) relative to |
| 63399 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 63400 | | Matrix rotation and translation |
| 63401 | | 0.61805201 0.33351201 0.71188584 227.92732460 |
| 63402 | | -0.18854207 -0.81623462 0.54608876 258.90803305 |
| 63403 | | 0.76319303 -0.47173168 -0.44159440 264.15773596 |
| 63404 | | Axis -0.88889010 -0.04480796 -0.45592394 |
| 63405 | | Axis point 0.00000000 143.45556759 30.46288448 |
| 63406 | | Rotation angle (degrees) 145.07363431 |
| 63407 | | Shift along axis -334.63931738 |
| 63408 | | |
| 63409 | | |
| 63410 | | > show #!1 models |
| 63411 | | |
| 63412 | | > hide #!1 models |
| 63413 | | |
| 63414 | | Drag select of 21 residues |
| 63415 | | |
| 63416 | | > select up |
| 63417 | | |
| 63418 | | 300 atoms, 303 bonds, 36 residues, 1 model selected |
| 63419 | | |
| 63420 | | > delete sel |
| 63421 | | |
| 63422 | | Drag select of 4 residues |
| 63423 | | |
| 63424 | | > delete sel |
| 63425 | | |
| 63426 | | > select clear |
| 63427 | | |
| 63428 | | Drag select of 4 residues, 1 pseudobonds |
| 63429 | | |
| 63430 | | > delete sel |
| 63431 | | |
| 63432 | | Drag select of 11 residues |
| 63433 | | |
| 63434 | | > delete sel |
| 63435 | | |
| 63436 | | > select #49/H:447 |
| 63437 | | |
| 63438 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 63439 | | |
| 63440 | | > delete sel |
| 63441 | | |
| 63442 | | > select #49/H:448 |
| 63443 | | |
| 63444 | | 11 atoms, 11 bonds, 1 residue, 1 model selected |
| 63445 | | |
| 63446 | | > delete sel |
| 63447 | | |
| 63448 | | > rename #49 20240711_copi_golph3_gammm1_T449-.cif |
| 63449 | | |
| 63450 | | > rename #49 20240711_copi_golph3_gammm1_T449-R609.cif |
| 63451 | | |
| 63452 | | > show #!1 models |
| 63453 | | |
| 63454 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 63455 | | > dataset/Chimera sessions/20240715_leaf_fitting_AF3_only_v2.cxs" |
| 63456 | | |
| 63457 | | > hide #!1 models |
| 63458 | | |
| 63459 | | > hide #!49 models |
| 63460 | | |
| 63461 | | > show #48 models |
| 63462 | | |
| 63463 | | > hide #48 models |
| 63464 | | |
| 63465 | | > show #47 models |
| 63466 | | |
| 63467 | | > hide #47 models |
| 63468 | | |
| 63469 | | > show #!49 models |
| 63470 | | |
| 63471 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 63472 | | > dataset/Chimera sessions/20240715_leaf_fitting_AF3_only_v2.cxs" |
| 63473 | | |
| 63474 | | > fitmap #49 inMap #1 |
| 63475 | | |
| 63476 | | Fit molecule 20240711_copi_golph3_gammm1_T449-R609.cif (#49) to map |
| 63477 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1264 atoms |
| 63478 | | average map value = 0.009619, steps = 80 |
| 63479 | | shifted from previous position = 0.462 |
| 63480 | | rotated from previous position = 0.922 degrees |
| 63481 | | atoms outside contour = 624, contour level = 0.0073613 |
| 63482 | | |
| 63483 | | Position of 20240711_copi_golph3_gammm1_T449-R609.cif (#49) relative to |
| 63484 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 63485 | | Matrix rotation and translation |
| 63486 | | 0.61374753 0.32116926 0.72122415 227.71817899 |
| 63487 | | -0.19898081 -0.82110208 0.53497477 259.15238914 |
| 63488 | | 0.76401611 -0.47184921 -0.44004285 264.55513680 |
| 63489 | | Axis -0.88780842 -0.03773356 -0.45866370 |
| 63490 | | Axis point 0.00000000 144.29403366 30.27810400 |
| 63491 | | Rotation angle (degrees) 145.45678076 |
| 63492 | | Shift along axis -333.29069740 |
| 63493 | | |
| 63494 | | |
| 63495 | | > hide #!49 models |
| 63496 | | |
| 63497 | | > show #34.1 models |
| 63498 | | |
| 63499 | | > fitmap #34.1 inMap #1 |
| 63500 | | |
| 63501 | | Fit molecule fold_20240711_copi_golph3_model_0.cif A (#34.1) to map |
| 63502 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2371 atoms |
| 63503 | | average map value = 0.00748, steps = 40 |
| 63504 | | shifted from previous position = 0.0303 |
| 63505 | | rotated from previous position = 0.0201 degrees |
| 63506 | | atoms outside contour = 1257, contour level = 0.0073613 |
| 63507 | | |
| 63508 | | Position of fold_20240711_copi_golph3_model_0.cif A (#34.1) relative to |
| 63509 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 63510 | | Matrix rotation and translation |
| 63511 | | 0.52743413 0.46261732 0.71259978 230.64249169 |
| 63512 | | 0.01546111 -0.84383896 0.53637372 257.96942955 |
| 63513 | | 0.84945523 -0.27188422 -0.45222204 263.21843979 |
| 63514 | | Axis -0.86556951 -0.14655953 -0.47886295 |
| 63515 | | Axis point 0.00000000 122.21935439 38.51117125 |
| 63516 | | Rotation angle (degrees) 152.16715037 |
| 63517 | | Shift along axis -363.49054517 |
| 63518 | | |
| 63519 | | |
| 63520 | | > hide #34.1 models |
| 63521 | | |
| 63522 | | > show #34.2 models |
| 63523 | | |
| 63524 | | > fitmap #34.2 inMap #1 |
| 63525 | | |
| 63526 | | Fit molecule fold_20240711_copi_golph3_model_0.cif B (#34.2) to map |
| 63527 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1457 atoms |
| 63528 | | average map value = 0.007695, steps = 48 |
| 63529 | | shifted from previous position = 0.00177 |
| 63530 | | rotated from previous position = 0.00707 degrees |
| 63531 | | atoms outside contour = 833, contour level = 0.0073613 |
| 63532 | | |
| 63533 | | Position of fold_20240711_copi_golph3_model_0.cif B (#34.2) relative to |
| 63534 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 63535 | | Matrix rotation and translation |
| 63536 | | 0.64422761 0.35685772 0.67647864 226.67911377 |
| 63537 | | -0.02945305 -0.87224662 0.48817861 253.34478005 |
| 63538 | | 0.76426651 -0.33442250 -0.55141481 256.81467971 |
| 63539 | | Axis -0.90096195 -0.09615053 -0.42311066 |
| 63540 | | Axis point 0.00000000 129.87656483 45.56303427 |
| 63541 | | Rotation angle (degrees) 152.83769521 |
| 63542 | | Shift along axis -337.24952092 |
| 63543 | | |
| 63544 | | |
| 63545 | | > show #34.3 models |
| 63546 | | |
| 63547 | | > fitmap #34.3 inMap #1 |
| 63548 | | |
| 63549 | | Fit molecule fold_20240711_copi_golph3_model_0.cif C (#34.3) to map |
| 63550 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1457 atoms |
| 63551 | | average map value = 0.01001, steps = 48 |
| 63552 | | shifted from previous position = 0.0263 |
| 63553 | | rotated from previous position = 0.0703 degrees |
| 63554 | | atoms outside contour = 625, contour level = 0.0073613 |
| 63555 | | |
| 63556 | | Position of fold_20240711_copi_golph3_model_0.cif C (#34.3) relative to |
| 63557 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 63558 | | Matrix rotation and translation |
| 63559 | | -0.54970504 0.35440909 -0.75645130 335.69327096 |
| 63560 | | 0.52748818 0.84943598 0.01465384 166.87860828 |
| 63561 | | 0.64775041 -0.39096383 -0.65388584 271.22208974 |
| 63562 | | Axis -0.27558852 -0.95405575 0.11759501 |
| 63563 | | Axis point 75.42683569 0.00000000 209.16244404 |
| 63564 | | Rotation angle (degrees) 132.61568455 |
| 63565 | | Shift along axis -219.83034570 |
| 63566 | | |
| 63567 | | |
| 63568 | | > hide #34.3 models |
| 63569 | | |
| 63570 | | > show #34.9 models |
| 63571 | | |
| 63572 | | > fitmap #34.9 inMap #1 |
| 63573 | | |
| 63574 | | Fit molecule fold_20240711_copi_golph3_model_0.cif I (#34.9) to map |
| 63575 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1420 atoms |
| 63576 | | average map value = 0.009574, steps = 48 |
| 63577 | | shifted from previous position = 0.145 |
| 63578 | | rotated from previous position = 1.13 degrees |
| 63579 | | atoms outside contour = 675, contour level = 0.0073613 |
| 63580 | | |
| 63581 | | Position of fold_20240711_copi_golph3_model_0.cif I (#34.9) relative to |
| 63582 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 63583 | | Matrix rotation and translation |
| 63584 | | 0.73435854 0.57870236 0.35471269 247.45554258 |
| 63585 | | 0.24940833 -0.71608940 0.65192901 251.86879523 |
| 63586 | | 0.63127886 -0.39028134 -0.67019956 274.80631520 |
| 63587 | | Axis -0.92440250 -0.24530409 -0.29207178 |
| 63588 | | Axis point 0.00000000 120.90579003 71.44053765 |
| 63589 | | Rotation angle (degrees) 145.68647177 |
| 63590 | | Shift along axis -370.79613621 |
| 63591 | | |
| 63592 | | |
| 63593 | | > fitmap #34.9 inMap #1 |
| 63594 | | |
| 63595 | | Fit molecule fold_20240711_copi_golph3_model_0.cif I (#34.9) to map |
| 63596 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1420 atoms |
| 63597 | | average map value = 0.009573, steps = 28 |
| 63598 | | shifted from previous position = 0.0418 |
| 63599 | | rotated from previous position = 0.0849 degrees |
| 63600 | | atoms outside contour = 674, contour level = 0.0073613 |
| 63601 | | |
| 63602 | | Position of fold_20240711_copi_golph3_model_0.cif I (#34.9) relative to |
| 63603 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 63604 | | Matrix rotation and translation |
| 63605 | | 0.73385633 0.57878680 0.35561316 247.42525713 |
| 63606 | | 0.24844240 -0.71590736 0.65249752 251.87628137 |
| 63607 | | 0.63224303 -0.39049005 -0.66916833 274.71078782 |
| 63608 | | Axis -0.92423836 -0.24513422 -0.29273309 |
| 63609 | | Axis point 0.00000000 120.90736206 71.25729870 |
| 63610 | | Rotation angle (degrees) 145.65035277 |
| 63611 | | Shift along axis -370.84034745 |
| 63612 | | |
| 63613 | | |
| 63614 | | > hide #34.2 models |
| 63615 | | |
| 63616 | | > show #34.1 models |
| 63617 | | |
| 63618 | | > show #34.2 models |
| 63619 | | |
| 63620 | | > show #34.3 models |
| 63621 | | |
| 63622 | | > show #34.4 models |
| 63623 | | |
| 63624 | | > show #34.5 models |
| 63625 | | |
| 63626 | | > show #34.6 models |
| 63627 | | |
| 63628 | | > show #34.7 models |
| 63629 | | |
| 63630 | | > show #34.8 models |
| 63631 | | |
| 63632 | | > show #38 models |
| 63633 | | |
| 63634 | | > show #39 models |
| 63635 | | |
| 63636 | | > show #!40 models |
| 63637 | | |
| 63638 | | > hide #!40 models |
| 63639 | | |
| 63640 | | > show #41 models |
| 63641 | | |
| 63642 | | > show #42 models |
| 63643 | | |
| 63644 | | > show #!43 models |
| 63645 | | |
| 63646 | | > show #!44 models |
| 63647 | | |
| 63648 | | > show #!45 models |
| 63649 | | |
| 63650 | | > show #46 models |
| 63651 | | |
| 63652 | | > show #47 models |
| 63653 | | |
| 63654 | | > show #48 models |
| 63655 | | |
| 63656 | | > show #!49 models |
| 63657 | | |
| 63658 | | > show #!1 models |
| 63659 | | |
| 63660 | | > hide #34.4 models |
| 63661 | | |
| 63662 | | > hide #34.5 models |
| 63663 | | |
| 63664 | | > hide #34.6 models |
| 63665 | | |
| 63666 | | > hide #34.7 models |
| 63667 | | |
| 63668 | | > hide #34.8 models |
| 63669 | | |
| 63670 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 63671 | | > dataset/Chimera sessions/20240715_leaf_fitting_AF3_only_v3.cxs" |
| 63672 | | |
| 63673 | | > volume #1 level 0.00566 |
| 63674 | | |
| 63675 | | > movie record |
| 63676 | | |
| 63677 | | > turn y 2 180 |
| 63678 | | |
| 63679 | | > wait 180 |
| 63680 | | |
| 63681 | | > movie encode /Users/becca/Desktop/movie1.mp4 |
| 63682 | | |
| 63683 | | Movie saved to /Users/becca/Desktop/movie1.mp4 |
| 63684 | | |
| 63685 | | |
| 63686 | | > volume #1 level 0.004904 |
| 63687 | | |
| 63688 | | > volume #1 level 0.00755 |
| 63689 | | |
| 63690 | | > volume #1 level 0.005849 |
| 63691 | | |
| 63692 | | > hide #42 models |
| 63693 | | |
| 63694 | | > show #42 models |
| 63695 | | |
| 63696 | | > hide #41 models |
| 63697 | | |
| 63698 | | > show #41 models |
| 63699 | | |
| 63700 | | > hide #47 models |
| 63701 | | |
| 63702 | | > show #47 models |
| 63703 | | |
| 63704 | | > hide #!1 models |
| 63705 | | |
| 63706 | | > show #34.8 models |
| 63707 | | |
| 63708 | | > hide #34.8 models |
| 63709 | | |
| 63710 | | > show #34.8 models |
| 63711 | | |
| 63712 | | > hide #34.8 models |
| 63713 | | |
| 63714 | | > show #34.8 models |
| 63715 | | |
| 63716 | | > hide #34.8 models |
| 63717 | | |
| 63718 | | > show #34.8 models |
| 63719 | | |
| 63720 | | > hide #34.8 models |
| 63721 | | |
| 63722 | | > show #34.8 models |
| 63723 | | |
| 63724 | | > hide #34.8 models |
| 63725 | | |
| 63726 | | > show #!1 models |
| 63727 | | |
| 63728 | | > show #!40 models |
| 63729 | | |
| 63730 | | > hide #!40 models |
| 63731 | | |
| 63732 | | > show #!40 models |
| 63733 | | |
| 63734 | | > hide #!40 models |
| 63735 | | |
| 63736 | | > show #23 models |
| 63737 | | |
| 63738 | | > hide #23 models |
| 63739 | | |
| 63740 | | > show #22 models |
| 63741 | | |
| 63742 | | > hide #22 models |
| 63743 | | |
| 63744 | | > show #22 models |
| 63745 | | |
| 63746 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 63747 | | > dataset/Chimera sessions/20240715_leaf_fitting_AF3_only_v4.cxs" |
| 63748 | | |
| 63749 | | ——— End of log from Wed Jul 24 16:40:43 2024 ——— |
| 63750 | | |
| 63751 | | opened ChimeraX session |
| 63752 | | |
| 63753 | | > hide #!49 models |
| 63754 | | |
| 63755 | | > hide #48 models |
| 63756 | | |
| 63757 | | > hide #47 models |
| 63758 | | |
| 63759 | | > hide #46 models |
| 63760 | | |
| 63761 | | > show #46 models |
| 63762 | | |
| 63763 | | > show #47 models |
| 63764 | | |
| 63765 | | > show #48 models |
| 63766 | | |
| 63767 | | > hide #48 models |
| 63768 | | |
| 63769 | | > show #!49 models |
| 63770 | | |
| 63771 | | > show #48 models |
| 63772 | | |
| 63773 | | > hide #34.9 models |
| 63774 | | |
| 63775 | | > show #34.9 models |
| 63776 | | |
| 63777 | | > hide #38 models |
| 63778 | | |
| 63779 | | > show #38 models |
| 63780 | | |
| 63781 | | > hide #38 models |
| 63782 | | |
| 63783 | | > show #38 models |
| 63784 | | |
| 63785 | | > ui tool show "Fit in Map" |
| 63786 | | |
| 63787 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 63788 | | QTBUG which explains how to reproduce. |
| 63789 | | |
| 63790 | | > fitmap #38 inMap #1 |
| 63791 | | |
| 63792 | | Fit molecule 20240711_copi_golph3_alpha_M1-T591.cif (#38) to map |
| 63793 | | relion_locres_filtered_20240326_GT.mrc (#1) using 4763 atoms |
| 63794 | | average map value = 0.008699, steps = 44 |
| 63795 | | shifted from previous position = 0.0233 |
| 63796 | | rotated from previous position = 0.0214 degrees |
| 63797 | | atoms outside contour = 1803, contour level = 0.0058489 |
| 63798 | | |
| 63799 | | Position of 20240711_copi_golph3_alpha_M1-T591.cif (#38) relative to |
| 63800 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 63801 | | Matrix rotation and translation |
| 63802 | | 0.57928342 0.37611015 0.72316794 229.39206867 |
| 63803 | | -0.04023814 -0.87290909 0.48622075 258.29781268 |
| 63804 | | 0.81413243 -0.31075855 -0.49052779 263.87511201 |
| 63805 | | Axis -0.88184067 -0.10065027 -0.46068054 |
| 63806 | | Axis point 0.00000000 129.96605027 41.81021370 |
| 63807 | | Rotation angle (degrees) 153.13537908 |
| 63808 | | Shift along axis -349.84712980 |
| 63809 | | |
| 63810 | | |
| 63811 | | > hide #39 models |
| 63812 | | |
| 63813 | | > show #39 models |
| 63814 | | |
| 63815 | | > combine #34.9 |
| 63816 | | |
| 63817 | | > hide #34.9 models |
| 63818 | | |
| 63819 | | > hide #!49 models |
| 63820 | | |
| 63821 | | > hide #48 models |
| 63822 | | |
| 63823 | | > hide #47 models |
| 63824 | | |
| 63825 | | > hide #46 models |
| 63826 | | |
| 63827 | | > hide #!45 models |
| 63828 | | |
| 63829 | | > hide #!44 models |
| 63830 | | |
| 63831 | | > hide #!43 models |
| 63832 | | |
| 63833 | | > hide #42 models |
| 63834 | | |
| 63835 | | > hide #41 models |
| 63836 | | |
| 63837 | | > hide #39 models |
| 63838 | | |
| 63839 | | > hide #38 models |
| 63840 | | |
| 63841 | | > hide #34.3 models |
| 63842 | | |
| 63843 | | > hide #34.2 models |
| 63844 | | |
| 63845 | | > hide #34.1 models |
| 63846 | | |
| 63847 | | > fitmap #50 inMap #1 |
| 63848 | | |
| 63849 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif I (#50) to map |
| 63850 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1420 atoms |
| 63851 | | average map value = 0.009574, steps = 28 |
| 63852 | | shifted from previous position = 0.0408 |
| 63853 | | rotated from previous position = 0.068 degrees |
| 63854 | | atoms outside contour = 589, contour level = 0.0058489 |
| 63855 | | |
| 63856 | | Position of copy of fold_20240711_copi_golph3_model_0.cif I (#50) relative to |
| 63857 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 63858 | | Matrix rotation and translation |
| 63859 | | 0.73431871 0.57860445 0.35495479 247.44441726 |
| 63860 | | 0.24911606 -0.71613386 0.65199192 251.87236537 |
| 63861 | | 0.63144057 -0.39034494 -0.67001016 274.79529283 |
| 63862 | | Axis -0.92438844 -0.24519930 -0.29220425 |
| 63863 | | Axis point 0.00000000 120.91785184 71.40627014 |
| 63864 | | Rotation angle (degrees) 145.68113010 |
| 63865 | | Shift along axis -370.79003714 |
| 63866 | | |
| 63867 | | |
| 63868 | | > fitmap #50 inMap #1 |
| 63869 | | |
| 63870 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif I (#50) to map |
| 63871 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1420 atoms |
| 63872 | | average map value = 0.009573, steps = 28 |
| 63873 | | shifted from previous position = 0.0372 |
| 63874 | | rotated from previous position = 0.0715 degrees |
| 63875 | | atoms outside contour = 588, contour level = 0.0058489 |
| 63876 | | |
| 63877 | | Position of copy of fold_20240711_copi_golph3_model_0.cif I (#50) relative to |
| 63878 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 63879 | | Matrix rotation and translation |
| 63880 | | 0.73383141 0.57880777 0.35563043 247.42412190 |
| 63881 | | 0.24841612 -0.71588088 0.65253657 251.87349377 |
| 63882 | | 0.63228227 -0.39050751 -0.66912106 274.71167249 |
| 63883 | | Axis -0.92422993 -0.24513816 -0.29275642 |
| 63884 | | Axis point 0.00000000 120.90618853 71.25299813 |
| 63885 | | Rotation angle (degrees) 145.64787358 |
| 63886 | | Shift along axis -370.84418966 |
| 63887 | | |
| 63888 | | |
| 63889 | | > fitmap #50 inMap #1 |
| 63890 | | |
| 63891 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif I (#50) to map |
| 63892 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1420 atoms |
| 63893 | | average map value = 0.009574, steps = 28 |
| 63894 | | shifted from previous position = 0.0348 |
| 63895 | | rotated from previous position = 0.0675 degrees |
| 63896 | | atoms outside contour = 590, contour level = 0.0058489 |
| 63897 | | |
| 63898 | | Position of copy of fold_20240711_copi_golph3_model_0.cif I (#50) relative to |
| 63899 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 63900 | | Matrix rotation and translation |
| 63901 | | 0.73429425 0.57859687 0.35501774 247.44244987 |
| 63902 | | 0.24906331 -0.71614294 0.65200210 251.87347979 |
| 63903 | | 0.63148983 -0.39033950 -0.66996690 274.79017546 |
| 63904 | | Axis -0.92438098 -0.24518406 -0.29224062 |
| 63905 | | Axis point 0.00000000 120.91792431 71.39713333 |
| 63906 | | Rotation angle (degrees) 145.68063673 |
| 63907 | | Shift along axis -370.79130830 |
| 63908 | | |
| 63909 | | |
| 63910 | | > fitmap #50 inMap #1 |
| 63911 | | |
| 63912 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif I (#50) to map |
| 63913 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1420 atoms |
| 63914 | | average map value = 0.009573, steps = 28 |
| 63915 | | shifted from previous position = 0.0362 |
| 63916 | | rotated from previous position = 0.0737 degrees |
| 63917 | | atoms outside contour = 588, contour level = 0.0058489 |
| 63918 | | |
| 63919 | | Position of copy of fold_20240711_copi_golph3_model_0.cif I (#50) relative to |
| 63920 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 63921 | | Matrix rotation and translation |
| 63922 | | 0.73379774 0.57879982 0.35571284 247.42116016 |
| 63923 | | 0.24833408 -0.71588294 0.65256554 251.87411343 |
| 63924 | | 0.63235358 -0.39051550 -0.66904901 274.70620339 |
| 63925 | | Axis -0.92421916 -0.24511679 -0.29280829 |
| 63926 | | Axis point 0.00000000 120.90704736 71.24013812 |
| 63927 | | Rotation angle (degrees) 145.64603009 |
| 63928 | | Shift along axis -370.84620633 |
| 63929 | | |
| 63930 | | |
| 63931 | | > fitmap #50 inMap #1 |
| 63932 | | |
| 63933 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif I (#50) to map |
| 63934 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1420 atoms |
| 63935 | | average map value = 0.009574, steps = 28 |
| 63936 | | shifted from previous position = 0.0359 |
| 63937 | | rotated from previous position = 0.0685 degrees |
| 63938 | | atoms outside contour = 590, contour level = 0.0058489 |
| 63939 | | |
| 63940 | | Position of copy of fold_20240711_copi_golph3_model_0.cif I (#50) relative to |
| 63941 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 63942 | | Matrix rotation and translation |
| 63943 | | 0.73426229 0.57859784 0.35508226 247.44015914 |
| 63944 | | 0.24900080 -0.71613881 0.65203051 251.87330676 |
| 63945 | | 0.63155164 -0.39034565 -0.66990505 274.78627468 |
| 63946 | | Axis -0.92437078 -0.24517082 -0.29228400 |
| 63947 | | Axis point 0.00000000 120.91787349 71.38689486 |
| 63948 | | Rotation angle (degrees) 145.67890818 |
| 63949 | | Shift along axis -370.79406718 |
| 63950 | | |
| 63951 | | |
| 63952 | | > fitmap #50 inMap #1 |
| 63953 | | |
| 63954 | | Fit molecule copy of fold_20240711_copi_golph3_model_0.cif I (#50) to map |
| 63955 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1420 atoms |
| 63956 | | average map value = 0.009573, steps = 28 |
| 63957 | | shifted from previous position = 0.0374 |
| 63958 | | rotated from previous position = 0.0746 degrees |
| 63959 | | atoms outside contour = 588, contour level = 0.0058489 |
| 63960 | | |
| 63961 | | Position of copy of fold_20240711_copi_golph3_model_0.cif I (#50) relative to |
| 63962 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 63963 | | Matrix rotation and translation |
| 63964 | | 0.73376385 0.57879138 0.35579647 247.41816530 |
| 63965 | | 0.24825171 -0.71588596 0.65259357 251.87483810 |
| 63966 | | 0.63242524 -0.39052249 -0.66897719 274.70055088 |
| 63967 | | Axis -0.92420837 -0.24509508 -0.29286054 |
| 63968 | | Axis point 0.00000000 120.90789483 71.22715847 |
| 63969 | | Rotation angle (degrees) 145.64425753 |
| 63970 | | Shift along axis -370.84817350 |
| 63971 | | |
| 63972 | | |
| 63973 | | > rename #50 20240711_copi_golph3_zeta1.cif |
| 63974 | | |
| 63975 | | > hide #!1 models |
| 63976 | | |
| 63977 | | > show #!1 models |
| 63978 | | |
| 63979 | | > hide #!1 models |
| 63980 | | |
| 63981 | | > show #!1 models |
| 63982 | | |
| 63983 | | > show #!18 models |
| 63984 | | |
| 63985 | | > hide #!18 models |
| 63986 | | |
| 63987 | | > show #!19 models |
| 63988 | | |
| 63989 | | > hide #!19 models |
| 63990 | | |
| 63991 | | > show #!20 models |
| 63992 | | |
| 63993 | | > hide #!20 models |
| 63994 | | |
| 63995 | | > show #!49 models |
| 63996 | | |
| 63997 | | > show #48 models |
| 63998 | | |
| 63999 | | > hide #!1 models |
| 64000 | | |
| 64001 | | > ui mousemode right select |
| 64002 | | |
| 64003 | | Drag select of 16 residues |
| 64004 | | |
| 64005 | | > select up |
| 64006 | | |
| 64007 | | 149 atoms, 150 bonds, 18 residues, 1 model selected |
| 64008 | | |
| 64009 | | > delete sel |
| 64010 | | |
| 64011 | | Drag select of 7 residues |
| 64012 | | |
| 64013 | | > delete sel |
| 64014 | | |
| 64015 | | Drag select of 1 residues |
| 64016 | | |
| 64017 | | > delete sel |
| 64018 | | |
| 64019 | | Drag select of 1 residues |
| 64020 | | |
| 64021 | | > delete sel |
| 64022 | | |
| 64023 | | > show #!1 models |
| 64024 | | |
| 64025 | | > hide #!1 models |
| 64026 | | |
| 64027 | | > show #12 models |
| 64028 | | |
| 64029 | | > hide #12 models |
| 64030 | | |
| 64031 | | > show #10 models |
| 64032 | | |
| 64033 | | > hide #10 models |
| 64034 | | |
| 64035 | | > show #26.3 models |
| 64036 | | |
| 64037 | | > hide #26.3 models |
| 64038 | | |
| 64039 | | > show #26.3 models |
| 64040 | | |
| 64041 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 64042 | | > dataset/Chimera sessions/20240805_leaf_fitting_AF3_update_v1.cxs" |
| 64043 | | |
| 64044 | | > hide #50 models |
| 64045 | | |
| 64046 | | > show #50 models |
| 64047 | | |
| 64048 | | > hide #26.3 models |
| 64049 | | |
| 64050 | | > hide #50 models |
| 64051 | | |
| 64052 | | > hide #!49 models |
| 64053 | | |
| 64054 | | > hide #48 models |
| 64055 | | |
| 64056 | | > show #34.2 models |
| 64057 | | |
| 64058 | | > hide #34.2 models |
| 64059 | | |
| 64060 | | > show #!1 models |
| 64061 | | |
| 64062 | | > combine #34.2 |
| 64063 | | |
| 64064 | | > combine #34.3 |
| 64065 | | |
| 64066 | | > show #34.2 models |
| 64067 | | |
| 64068 | | > hide #34.2 models |
| 64069 | | |
| 64070 | | > show #34.2 models |
| 64071 | | |
| 64072 | | > show #34.3 models |
| 64073 | | |
| 64074 | | > hide #34.3 models |
| 64075 | | |
| 64076 | | > hide #34.2 models |
| 64077 | | |
| 64078 | | > show #34.2 models |
| 64079 | | |
| 64080 | | > show #34.3 models |
| 64081 | | |
| 64082 | | > hide #51 models |
| 64083 | | |
| 64084 | | > hide #52 models |
| 64085 | | |
| 64086 | | > hide #34.3 models |
| 64087 | | |
| 64088 | | > hide #34.2 models |
| 64089 | | |
| 64090 | | > hide #22 models |
| 64091 | | |
| 64092 | | > show #51 models |
| 64093 | | |
| 64094 | | > show #52 models |
| 64095 | | |
| 64096 | | > rename #51 20240711_copi_golph3_Arf1_.cif |
| 64097 | | |
| 64098 | | > rename #52 20240711_copi_golph3_Arf1_.cif |
| 64099 | | |
| 64100 | | > hide #52 models |
| 64101 | | |
| 64102 | | > show #52 models |
| 64103 | | |
| 64104 | | > show #!49 models |
| 64105 | | |
| 64106 | | > show #48 models |
| 64107 | | |
| 64108 | | > hide #48 models |
| 64109 | | |
| 64110 | | > hide #!49 models |
| 64111 | | |
| 64112 | | > show #!45 models |
| 64113 | | |
| 64114 | | > show #!44 models |
| 64115 | | |
| 64116 | | > hide #!45 models |
| 64117 | | |
| 64118 | | > hide #!44 models |
| 64119 | | |
| 64120 | | > hide #51 models |
| 64121 | | |
| 64122 | | > show #51 models |
| 64123 | | |
| 64124 | | > hide #51 models |
| 64125 | | |
| 64126 | | > show #51 models |
| 64127 | | |
| 64128 | | > hide #51 models |
| 64129 | | |
| 64130 | | > rename #51 20240711_copi_golph3_beta_Arf1_.cif |
| 64131 | | |
| 64132 | | > rename #52 20240711_copi_golph3_gamma_Arf1_.cif |
| 64133 | | |
| 64134 | | > hide #52 models |
| 64135 | | |
| 64136 | | > show #52 models |
| 64137 | | |
| 64138 | | > hide #52 models |
| 64139 | | |
| 64140 | | > show #51 models |
| 64141 | | |
| 64142 | | > combine #34.2 |
| 64143 | | |
| 64144 | | > hide #51 models |
| 64145 | | |
| 64146 | | > show #!37 models |
| 64147 | | |
| 64148 | | > hide #!37 models |
| 64149 | | |
| 64150 | | > show #!36 models |
| 64151 | | |
| 64152 | | > hide #!36 models |
| 64153 | | |
| 64154 | | > show #!36 models |
| 64155 | | |
| 64156 | | > hide #!36 models |
| 64157 | | |
| 64158 | | > ui tool show Matchmaker |
| 64159 | | |
| 64160 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 64161 | | QTBUG which explains how to reproduce. |
| 64162 | | |
| 64163 | | > show #!36 models |
| 64164 | | |
| 64165 | | > hide #!36 models |
| 64166 | | |
| 64167 | | > matchmaker #53 to #36 |
| 64168 | | |
| 64169 | | Parameters |
| 64170 | | --- |
| 64171 | | Chain pairing | bb |
| 64172 | | Alignment algorithm | Needleman-Wunsch |
| 64173 | | Similarity matrix | BLOSUM-62 |
| 64174 | | SS fraction | 0.3 |
| 64175 | | Gap open (HH/SS/other) | 18/18/6 |
| 64176 | | Gap extend | 1 |
| 64177 | | SS matrix | | | H | S | O |
| 64178 | | ---|---|---|--- |
| 64179 | | H | 6 | -9 | -6 |
| 64180 | | S | | 6 | -6 |
| 64181 | | O | | | 4 |
| 64182 | | Iteration cutoff | 2 |
| 64183 | | |
| 64184 | | Matchmaker copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A, chain A (#36) |
| 64185 | | with copy of fold_20240711_copi_golph3_model_0.cif B, chain B (#53), sequence |
| 64186 | | alignment score = 717.9 |
| 64187 | | RMSD between 159 pruned atom pairs is 0.586 angstroms; (across all 159 pairs: |
| 64188 | | 0.586) |
| 64189 | | |
| 64190 | | |
| 64191 | | > show #!37 models |
| 64192 | | |
| 64193 | | > hide #!37 models |
| 64194 | | |
| 64195 | | > show #!36 models |
| 64196 | | |
| 64197 | | > hide #!36 models |
| 64198 | | |
| 64199 | | > show #!36 models |
| 64200 | | |
| 64201 | | > hide #!36 models |
| 64202 | | |
| 64203 | | > hide #53 models |
| 64204 | | |
| 64205 | | > rename #53 20240711_copi_golph3_third_Arf1.cif |
| 64206 | | |
| 64207 | | > show #51 models |
| 64208 | | |
| 64209 | | > fitmap #51 inMap #1 |
| 64210 | | |
| 64211 | | Fit molecule 20240711_copi_golph3_beta_Arf1_.cif (#51) to map |
| 64212 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1457 atoms |
| 64213 | | average map value = 0.007696, steps = 48 |
| 64214 | | shifted from previous position = 0.00615 |
| 64215 | | rotated from previous position = 0.0275 degrees |
| 64216 | | atoms outside contour = 688, contour level = 0.0058489 |
| 64217 | | |
| 64218 | | Position of 20240711_copi_golph3_beta_Arf1_.cif (#51) relative to |
| 64219 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 64220 | | Matrix rotation and translation |
| 64221 | | 0.64457520 0.35659608 0.67628548 226.70008894 |
| 64222 | | -0.02948840 -0.87231016 0.48806293 253.33598453 |
| 64223 | | 0.76397202 -0.33453583 -0.55175404 256.79298601 |
| 64224 | | Axis -0.90106555 -0.09605086 -0.42291265 |
| 64225 | | Axis point 0.00000000 129.88971353 45.58172879 |
| 64226 | | Rotation angle (degrees) 152.84115898 |
| 64227 | | Shift along axis -337.20578188 |
| 64228 | | |
| 64229 | | |
| 64230 | | > fitmap #51 inMap #1 |
| 64231 | | |
| 64232 | | Fit molecule 20240711_copi_golph3_beta_Arf1_.cif (#51) to map |
| 64233 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1457 atoms |
| 64234 | | average map value = 0.007695, steps = 64 |
| 64235 | | shifted from previous position = 0.00981 |
| 64236 | | rotated from previous position = 0.0296 degrees |
| 64237 | | atoms outside contour = 688, contour level = 0.0058489 |
| 64238 | | |
| 64239 | | Position of 20240711_copi_golph3_beta_Arf1_.cif (#51) relative to |
| 64240 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 64241 | | Matrix rotation and translation |
| 64242 | | 0.64420575 0.35687129 0.67649230 226.67308114 |
| 64243 | | -0.02949189 -0.87222673 0.48821180 253.34669641 |
| 64244 | | 0.76428344 -0.33445989 -0.55136867 256.81918555 |
| 64245 | | Axis -0.90095431 -0.09614504 -0.42312818 |
| 64246 | | Axis point 0.00000000 129.88010697 45.56012856 |
| 64247 | | Rotation angle (degrees) 152.83492327 |
| 64248 | | Shift along axis -337.24755383 |
| 64249 | | |
| 64250 | | |
| 64251 | | > show #52 models |
| 64252 | | |
| 64253 | | > fitmap #52 inMap #1 |
| 64254 | | |
| 64255 | | Fit molecule 20240711_copi_golph3_gamma_Arf1_.cif (#52) to map |
| 64256 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1457 atoms |
| 64257 | | average map value = 0.01001, steps = 84 |
| 64258 | | shifted from previous position = 0.027 |
| 64259 | | rotated from previous position = 0.0679 degrees |
| 64260 | | atoms outside contour = 497, contour level = 0.0058489 |
| 64261 | | |
| 64262 | | Position of 20240711_copi_golph3_gamma_Arf1_.cif (#52) relative to |
| 64263 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 64264 | | Matrix rotation and translation |
| 64265 | | -0.54981633 0.35457906 -0.75629075 335.68690009 |
| 64266 | | 0.52678693 0.84985645 0.01547717 166.87961505 |
| 64267 | | 0.64822645 -0.38989448 -0.65405257 271.15412697 |
| 64268 | | Axis -0.27539685 -0.95418515 0.11699266 |
| 64269 | | Axis point 75.48645841 0.00000000 209.07432900 |
| 64270 | | Rotation angle (degrees) 132.61013952 |
| 64271 | | Shift along axis -219.95812251 |
| 64272 | | |
| 64273 | | |
| 64274 | | > show #53 models |
| 64275 | | |
| 64276 | | > fitmap #53 inMap #1 |
| 64277 | | |
| 64278 | | Fit molecule 20240711_copi_golph3_third_Arf1.cif (#53) to map |
| 64279 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1457 atoms |
| 64280 | | average map value = 0.00665, steps = 44 |
| 64281 | | shifted from previous position = 0.31 |
| 64282 | | rotated from previous position = 2.81 degrees |
| 64283 | | atoms outside contour = 711, contour level = 0.0058489 |
| 64284 | | |
| 64285 | | Position of 20240711_copi_golph3_third_Arf1.cif (#53) relative to |
| 64286 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 64287 | | Matrix rotation and translation |
| 64288 | | 0.73474151 0.66767249 0.11986808 227.72567702 |
| 64289 | | 0.67552614 -0.70407307 -0.21896472 323.51774462 |
| 64290 | | -0.06180084 0.24185649 -0.96834193 187.17487412 |
| 64291 | | Axis 0.93019969 0.36671135 0.01585314 |
| 64292 | | Axis point 0.00000000 104.57055845 105.25607505 |
| 64293 | | Rotation angle (degrees) 165.65853934 |
| 64294 | | Shift along axis 333.43529205 |
| 64295 | | |
| 64296 | | |
| 64297 | | > fitmap #53 inMap #1 |
| 64298 | | |
| 64299 | | Fit molecule 20240711_copi_golph3_third_Arf1.cif (#53) to map |
| 64300 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1457 atoms |
| 64301 | | average map value = 0.00665, steps = 40 |
| 64302 | | shifted from previous position = 0.0136 |
| 64303 | | rotated from previous position = 0.0308 degrees |
| 64304 | | atoms outside contour = 713, contour level = 0.0058489 |
| 64305 | | |
| 64306 | | Position of 20240711_copi_golph3_third_Arf1.cif (#53) relative to |
| 64307 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 64308 | | Matrix rotation and translation |
| 64309 | | 0.73476750 0.66754990 0.12039046 227.72558336 |
| 64310 | | 0.67553483 -0.70406983 -0.21894833 323.51171062 |
| 64311 | | -0.06139564 0.24220407 -0.96828083 187.19776419 |
| 64312 | | Axis 0.93020512 0.36668652 0.01610666 |
| 64313 | | Axis point 0.00000000 104.56609656 105.24562509 |
| 64314 | | Rotation angle (degrees) 165.64809683 |
| 64315 | | Shift along axis 333.47401758 |
| 64316 | | |
| 64317 | | |
| 64318 | | > fitmap #53 inMap #1 |
| 64319 | | |
| 64320 | | Fit molecule 20240711_copi_golph3_third_Arf1.cif (#53) to map |
| 64321 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1457 atoms |
| 64322 | | average map value = 0.006651, steps = 28 |
| 64323 | | shifted from previous position = 0.0356 |
| 64324 | | rotated from previous position = 0.0154 degrees |
| 64325 | | atoms outside contour = 710, contour level = 0.0058489 |
| 64326 | | |
| 64327 | | Position of 20240711_copi_golph3_third_Arf1.cif (#53) relative to |
| 64328 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 64329 | | Matrix rotation and translation |
| 64330 | | 0.73472974 0.66763686 0.12013838 227.74881556 |
| 64331 | | 0.67555870 -0.70405152 -0.21893356 323.53092283 |
| 64332 | | -0.06158450 0.24201753 -0.96831548 187.18349736 |
| 64333 | | Axis 0.93019581 0.36671541 0.01598621 |
| 64334 | | Axis point 0.00000000 104.57069352 105.24747902 |
| 64335 | | Rotation angle (degrees) 165.65434959 |
| 64336 | | Shift along axis 333.48712519 |
| 64337 | | |
| 64338 | | |
| 64339 | | > fitmap #53 inMap #1 |
| 64340 | | |
| 64341 | | Fit molecule 20240711_copi_golph3_third_Arf1.cif (#53) to map |
| 64342 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1457 atoms |
| 64343 | | average map value = 0.00665, steps = 40 |
| 64344 | | shifted from previous position = 0.0139 |
| 64345 | | rotated from previous position = 0.0172 degrees |
| 64346 | | atoms outside contour = 711, contour level = 0.0058489 |
| 64347 | | |
| 64348 | | Position of 20240711_copi_golph3_third_Arf1.cif (#53) relative to |
| 64349 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 64350 | | Matrix rotation and translation |
| 64351 | | 0.73469719 0.66763496 0.12034777 227.73810152 |
| 64352 | | 0.67562058 -0.70405850 -0.21872005 323.53156953 |
| 64353 | | -0.06129328 0.24200244 -0.96833773 187.20374727 |
| 64354 | | Axis 0.93018806 0.36672909 0.01612277 |
| 64355 | | Axis point 0.00000000 104.57889965 105.23349404 |
| 64356 | | Rotation angle (degrees) 165.66149440 |
| 64357 | | Shift along axis 333.50594426 |
| 64358 | | |
| 64359 | | |
| 64360 | | > fitmap #53 inMap #1 |
| 64361 | | |
| 64362 | | Fit molecule 20240711_copi_golph3_third_Arf1.cif (#53) to map |
| 64363 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1457 atoms |
| 64364 | | average map value = 0.00665, steps = 40 |
| 64365 | | shifted from previous position = 0.00406 |
| 64366 | | rotated from previous position = 0.0122 degrees |
| 64367 | | atoms outside contour = 710, contour level = 0.0058489 |
| 64368 | | |
| 64369 | | Position of 20240711_copi_golph3_third_Arf1.cif (#53) relative to |
| 64370 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 64371 | | Matrix rotation and translation |
| 64372 | | 0.73468704 0.66761159 0.12053931 227.74415717 |
| 64373 | | 0.67563895 -0.70401573 -0.21880095 323.53301656 |
| 64374 | | -0.06121248 0.24219128 -0.96829562 187.20665379 |
| 64375 | | Axis 0.93018391 0.36673632 0.01619750 |
| 64376 | | Axis point 0.00000000 104.57131692 105.23348164 |
| 64377 | | Rotation angle (degrees) 165.65285419 |
| 64378 | | Shift along axis 333.52753885 |
| 64379 | | |
| 64380 | | |
| 64381 | | > hide #53 models |
| 64382 | | |
| 64383 | | > hide #52 models |
| 64384 | | |
| 64385 | | > hide #51 models |
| 64386 | | |
| 64387 | | > show #51 models |
| 64388 | | |
| 64389 | | > hide #!1 models |
| 64390 | | |
| 64391 | | Drag select of 14 residues |
| 64392 | | |
| 64393 | | > delete sel |
| 64394 | | |
| 64395 | | > show #!1 models |
| 64396 | | |
| 64397 | | > show #53 models |
| 64398 | | |
| 64399 | | > fitmap #51 inMap #1 |
| 64400 | | |
| 64401 | | Fit molecule 20240711_copi_golph3_beta_Arf1_.cif (#51) to map |
| 64402 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1350 atoms |
| 64403 | | average map value = 0.007965, steps = 44 |
| 64404 | | shifted from previous position = 0.1 |
| 64405 | | rotated from previous position = 1.93 degrees |
| 64406 | | atoms outside contour = 589, contour level = 0.0058489 |
| 64407 | | |
| 64408 | | Position of 20240711_copi_golph3_beta_Arf1_.cif (#51) relative to |
| 64409 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 64410 | | Matrix rotation and translation |
| 64411 | | 0.62705671 0.37531487 0.68259697 225.36835982 |
| 64412 | | -0.03832747 -0.86035100 0.50825895 253.00409308 |
| 64413 | | 0.77803013 -0.34486940 -0.52510400 258.42181793 |
| 64414 | | Axis -0.89528843 -0.10014929 -0.43408380 |
| 64415 | | Axis point 0.00000000 129.63459702 43.56218732 |
| 64416 | | Rotation angle (degrees) 151.54590708 |
| 64417 | | Shift along axis -339.28459171 |
| 64418 | | |
| 64419 | | |
| 64420 | | > fitmap #51 inMap #1 |
| 64421 | | |
| 64422 | | Fit molecule 20240711_copi_golph3_beta_Arf1_.cif (#51) to map |
| 64423 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1350 atoms |
| 64424 | | average map value = 0.007965, steps = 48 |
| 64425 | | shifted from previous position = 0.00646 |
| 64426 | | rotated from previous position = 0.023 degrees |
| 64427 | | atoms outside contour = 589, contour level = 0.0058489 |
| 64428 | | |
| 64429 | | Position of 20240711_copi_golph3_beta_Arf1_.cif (#51) relative to |
| 64430 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 64431 | | Matrix rotation and translation |
| 64432 | | 0.62729835 0.37514040 0.68247084 225.37847302 |
| 64433 | | -0.03855985 -0.86029805 0.50833100 252.99193667 |
| 64434 | | 0.77782383 -0.34519117 -0.52519820 258.41030972 |
| 64435 | | Axis -0.89535433 -0.10002635 -0.43397620 |
| 64436 | | Axis point 0.00000000 129.65621524 43.55537227 |
| 64437 | | Rotation angle (degrees) 151.53386009 |
| 64438 | | Shift along axis -339.24337871 |
| 64439 | | |
| 64440 | | |
| 64441 | | > fitmap #51 inMap #1 |
| 64442 | | |
| 64443 | | Fit molecule 20240711_copi_golph3_beta_Arf1_.cif (#51) to map |
| 64444 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1350 atoms |
| 64445 | | average map value = 0.007965, steps = 48 |
| 64446 | | shifted from previous position = 0.0346 |
| 64447 | | rotated from previous position = 0.0831 degrees |
| 64448 | | atoms outside contour = 588, contour level = 0.0058489 |
| 64449 | | |
| 64450 | | Position of 20240711_copi_golph3_beta_Arf1_.cif (#51) relative to |
| 64451 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 64452 | | Matrix rotation and translation |
| 64453 | | 0.62745791 0.37612970 0.68177930 225.39126078 |
| 64454 | | -0.03718967 -0.86011531 0.50874215 253.06743887 |
| 64455 | | 0.77776185 -0.34456943 -0.52569802 258.38364351 |
| 64456 | | Axis -0.89540639 -0.10071747 -0.43370887 |
| 64457 | | Axis point 0.00000000 129.60201318 43.61261413 |
| 64458 | | Rotation angle (degrees) 151.54332975 |
| 64459 | | Shift along axis -339.36836705 |
| 64460 | | |
| 64461 | | |
| 64462 | | > fitmap #51 inMap #1 |
| 64463 | | |
| 64464 | | Fit molecule 20240711_copi_golph3_beta_Arf1_.cif (#51) to map |
| 64465 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1350 atoms |
| 64466 | | average map value = 0.007965, steps = 44 |
| 64467 | | shifted from previous position = 0.00857 |
| 64468 | | rotated from previous position = 0.0157 degrees |
| 64469 | | atoms outside contour = 587, contour level = 0.0058489 |
| 64470 | | |
| 64471 | | Position of 20240711_copi_golph3_beta_Arf1_.cif (#51) relative to |
| 64472 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 64473 | | Matrix rotation and translation |
| 64474 | | 0.62730945 0.37603713 0.68196696 225.39058721 |
| 64475 | | -0.03722893 -0.86021603 0.50856896 253.06736810 |
| 64476 | | 0.77787972 -0.34441902 -0.52562219 258.39662102 |
| 64477 | | Axis -0.89536738 -0.10067804 -0.43379855 |
| 64478 | | Axis point 0.00000000 129.59805167 43.61433360 |
| 64479 | | Rotation angle (degrees) 151.55375336 |
| 64480 | | Shift along axis -339.37778698 |
| 64481 | | |
| 64482 | | |
| 64483 | | > fitmap #51 inMap #1 |
| 64484 | | |
| 64485 | | Fit molecule 20240711_copi_golph3_beta_Arf1_.cif (#51) to map |
| 64486 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1350 atoms |
| 64487 | | average map value = 0.007965, steps = 28 |
| 64488 | | shifted from previous position = 0.0306 |
| 64489 | | rotated from previous position = 0.0409 degrees |
| 64490 | | atoms outside contour = 589, contour level = 0.0058489 |
| 64491 | | |
| 64492 | | Position of 20240711_copi_golph3_beta_Arf1_.cif (#51) relative to |
| 64493 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 64494 | | Matrix rotation and translation |
| 64495 | | 0.62735278 0.37558998 0.68217348 225.37506975 |
| 64496 | | -0.03793517 -0.86022217 0.50850638 253.03260293 |
| 64497 | | 0.77781065 -0.34489126 -0.52541470 258.40373752 |
| 64498 | | Axis -0.89537305 -0.10034121 -0.43386489 |
| 64499 | | Axis point 0.00000000 129.63520070 43.58472205 |
| 64500 | | Rotation angle (degrees) 151.53904146 |
| 64501 | | Shift along axis -339.29667052 |
| 64502 | | |
| 64503 | | |
| 64504 | | > fitmap #51 inMap #1 |
| 64505 | | |
| 64506 | | Fit molecule 20240711_copi_golph3_beta_Arf1_.cif (#51) to map |
| 64507 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1350 atoms |
| 64508 | | average map value = 0.007965, steps = 40 |
| 64509 | | shifted from previous position = 0.0063 |
| 64510 | | rotated from previous position = 0.0343 degrees |
| 64511 | | atoms outside contour = 589, contour level = 0.0058489 |
| 64512 | | |
| 64513 | | Position of 20240711_copi_golph3_beta_Arf1_.cif (#51) relative to |
| 64514 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 64515 | | Matrix rotation and translation |
| 64516 | | 0.62699890 0.37538872 0.68260947 225.35986129 |
| 64517 | | -0.03823037 -0.86035812 0.50825421 253.01464233 |
| 64518 | | 0.77808150 -0.34477124 -0.52509235 258.42330346 |
| 64519 | | Axis -0.89527282 -0.10020043 -0.43410420 |
| 64520 | | Axis point 0.00000000 129.63081003 43.56565676 |
| 64521 | | Rotation angle (degrees) 151.54911088 |
| 64522 | | Shift along axis -339.29337407 |
| 64523 | | |
| 64524 | | |
| 64525 | | > volume #1 level 0.006237 |
| 64526 | | |
| 64527 | | > hide #!1 models |
| 64528 | | |
| 64529 | | Drag select of 14 residues |
| 64530 | | |
| 64531 | | > delete sel |
| 64532 | | |
| 64533 | | > fitmap #53 inMap #1 |
| 64534 | | |
| 64535 | | Fit molecule 20240711_copi_golph3_third_Arf1.cif (#53) to map |
| 64536 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1350 atoms |
| 64537 | | average map value = 0.006839, steps = 60 |
| 64538 | | shifted from previous position = 0.0556 |
| 64539 | | rotated from previous position = 0.867 degrees |
| 64540 | | atoms outside contour = 667, contour level = 0.0062369 |
| 64541 | | |
| 64542 | | Position of 20240711_copi_golph3_third_Arf1.cif (#53) relative to |
| 64543 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 64544 | | Matrix rotation and translation |
| 64545 | | 0.73564428 0.66850898 0.10919360 227.56125236 |
| 64546 | | 0.67445861 -0.70797958 -0.20945285 323.63792784 |
| 64547 | | -0.06271427 0.22772935 -0.97170276 187.16264710 |
| 64548 | | Axis 0.93056255 0.36591386 0.01266407 |
| 64549 | | Axis point 0.00000000 105.36896352 104.95840087 |
| 64550 | | Rotation angle (degrees) 166.41414785 |
| 64551 | | Shift along axis 332.55382421 |
| 64552 | | |
| 64553 | | |
| 64554 | | > fitmap #53 inMap #1 |
| 64555 | | |
| 64556 | | Fit molecule 20240711_copi_golph3_third_Arf1.cif (#53) to map |
| 64557 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1350 atoms |
| 64558 | | average map value = 0.006838, steps = 44 |
| 64559 | | shifted from previous position = 0.0062 |
| 64560 | | rotated from previous position = 0.0283 degrees |
| 64561 | | atoms outside contour = 666, contour level = 0.0062369 |
| 64562 | | |
| 64563 | | Position of 20240711_copi_golph3_third_Arf1.cif (#53) relative to |
| 64564 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 64565 | | Matrix rotation and translation |
| 64566 | | 0.73571781 0.66850697 0.10870938 227.55121537 |
| 64567 | | 0.67435081 -0.70809718 -0.20940241 323.63220049 |
| 64568 | | -0.06301016 0.22736934 -0.97176793 187.14580120 |
| 64569 | | Axis 0.93058458 0.36586515 0.01245087 |
| 64570 | | Axis point 0.00000000 105.38345388 104.96517112 |
| 64571 | | Rotation angle (degrees) 166.42747489 |
| 64572 | | Shift along axis 332.49152464 |
| 64573 | | |
| 64574 | | |
| 64575 | | > fitmap #53 inMap #1 |
| 64576 | | |
| 64577 | | Fit molecule 20240711_copi_golph3_third_Arf1.cif (#53) to map |
| 64578 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1350 atoms |
| 64579 | | average map value = 0.006838, steps = 40 |
| 64580 | | shifted from previous position = 0.0168 |
| 64581 | | rotated from previous position = 0.0486 degrees |
| 64582 | | atoms outside contour = 665, contour level = 0.0062369 |
| 64583 | | |
| 64584 | | Position of 20240711_copi_golph3_third_Arf1.cif (#53) relative to |
| 64585 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 64586 | | Matrix rotation and translation |
| 64587 | | 0.73590946 0.66841543 0.10797257 227.53734802 |
| 64588 | | 0.67407145 -0.70824781 -0.20979208 323.59975740 |
| 64589 | | -0.06375693 0.22716920 -0.97176602 187.10118130 |
| 64590 | | Axis 0.93063601 0.36574786 0.01204613 |
| 64591 | | Axis point 0.00000000 105.37700519 105.00023128 |
| 64592 | | Rotation angle (degrees) 166.42223682 |
| 64593 | | Shift along axis 332.36421596 |
| 64594 | | |
| 64595 | | |
| 64596 | | > fitmap #53 inMap #1 |
| 64597 | | |
| 64598 | | Fit molecule 20240711_copi_golph3_third_Arf1.cif (#53) to map |
| 64599 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1350 atoms |
| 64600 | | average map value = 0.006839, steps = 44 |
| 64601 | | shifted from previous position = 0.0167 |
| 64602 | | rotated from previous position = 0.0249 degrees |
| 64603 | | atoms outside contour = 666, contour level = 0.0062369 |
| 64604 | | |
| 64605 | | Position of 20240711_copi_golph3_third_Arf1.cif (#53) relative to |
| 64606 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 64607 | | Matrix rotation and translation |
| 64608 | | 0.73578108 0.66850477 0.10829395 227.54808611 |
| 64609 | | 0.67424697 -0.70815872 -0.20952865 323.62383235 |
| 64610 | | -0.06338160 0.22718408 -0.97178710 187.12517723 |
| 64611 | | Axis 0.93060214 0.36582774 0.01223620 |
| 64612 | | Axis point 0.00000000 105.38408978 104.98039973 |
| 64613 | | Rotation angle (degrees) 166.42960463 |
| 64614 | | Shift along axis 332.43701163 |
| 64615 | | |
| 64616 | | |
| 64617 | | > show #!1 models |
| 64618 | | |
| 64619 | | > show #52 models |
| 64620 | | |
| 64621 | | > hide #!1 models |
| 64622 | | |
| 64623 | | Drag select of 12 residues |
| 64624 | | |
| 64625 | | > select up |
| 64626 | | |
| 64627 | | 103 atoms, 105 bonds, 13 residues, 1 model selected |
| 64628 | | |
| 64629 | | > delete sel |
| 64630 | | |
| 64631 | | Drag select of 1 residues |
| 64632 | | |
| 64633 | | > delete sel |
| 64634 | | |
| 64635 | | > fitmap #52 inMap #1 |
| 64636 | | |
| 64637 | | Fit molecule 20240711_copi_golph3_gamma_Arf1_.cif (#52) to map |
| 64638 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1350 atoms |
| 64639 | | average map value = 0.01044, steps = 96 |
| 64640 | | shifted from previous position = 0.0478 |
| 64641 | | rotated from previous position = 1.37 degrees |
| 64642 | | atoms outside contour = 447, contour level = 0.0062369 |
| 64643 | | |
| 64644 | | Position of 20240711_copi_golph3_gamma_Arf1_.cif (#52) relative to |
| 64645 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 64646 | | Matrix rotation and translation |
| 64647 | | -0.55739175 0.36533697 -0.74554901 335.06611515 |
| 64648 | | 0.54035502 0.84139599 0.00832090 166.90426300 |
| 64649 | | 0.63034189 -0.39822315 -0.66639885 272.90142887 |
| 64650 | | Axis -0.28128070 -0.95195479 0.12109191 |
| 64651 | | Axis point 75.64388097 0.00000000 208.37368288 |
| 64652 | | Rotation angle (degrees) 133.72496068 |
| 64653 | | Shift along axis -220.08678665 |
| 64654 | | |
| 64655 | | |
| 64656 | | > fitmap #52 inMap #1 |
| 64657 | | |
| 64658 | | Fit molecule 20240711_copi_golph3_gamma_Arf1_.cif (#52) to map |
| 64659 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1350 atoms |
| 64660 | | average map value = 0.01044, steps = 64 |
| 64661 | | shifted from previous position = 0.0226 |
| 64662 | | rotated from previous position = 0.0378 degrees |
| 64663 | | atoms outside contour = 443, contour level = 0.0062369 |
| 64664 | | |
| 64665 | | Position of 20240711_copi_golph3_gamma_Arf1_.cif (#52) relative to |
| 64666 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 64667 | | Matrix rotation and translation |
| 64668 | | -0.55693555 0.36555126 -0.74578487 335.05111132 |
| 64669 | | 0.54036894 0.84138141 0.00887302 166.86167507 |
| 64670 | | 0.63073307 -0.39805728 -0.66612776 272.87607279 |
| 64671 | | Axis -0.28141528 -0.95193988 0.12089630 |
| 64672 | | Axis point 75.59745709 0.00000000 208.37065311 |
| 64673 | | Rotation angle (degrees) 133.69671413 |
| 64674 | | Shift along axis -220.14107742 |
| 64675 | | |
| 64676 | | |
| 64677 | | > show #!1 models |
| 64678 | | |
| 64679 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 64680 | | > dataset/Chimera sessions/20240805_leaf_fitting_AF3_update_v1.cxs" |
| 64681 | | |
| 64682 | | > hide #51 models |
| 64683 | | |
| 64684 | | > hide #52 models |
| 64685 | | |
| 64686 | | > hide #53 models |
| 64687 | | |
| 64688 | | > show #50 models |
| 64689 | | |
| 64690 | | > hide #50 models |
| 64691 | | |
| 64692 | | > show #50 models |
| 64693 | | |
| 64694 | | > hide #50 models |
| 64695 | | |
| 64696 | | > combine #34.1 |
| 64697 | | |
| 64698 | | [Repeated 1 time(s)] |
| 64699 | | |
| 64700 | | > rename #54 "20240711_copi_golph3_model_0.cif A" |
| 64701 | | |
| 64702 | | > rename #54 "20240711_copi_golph3_golph3_M1-.cif A" |
| 64703 | | |
| 64704 | | > rename #55 20240711_copi_golph3_golph3_.cif |
| 64705 | | |
| 64706 | | > rename #54 20240711_copi_golph3_golph3_M1-.cif |
| 64707 | | |
| 64708 | | > hide #55 models |
| 64709 | | |
| 64710 | | > show #55 models |
| 64711 | | |
| 64712 | | > hide #55 models |
| 64713 | | |
| 64714 | | > show #!45 models |
| 64715 | | |
| 64716 | | > show #!44 models |
| 64717 | | |
| 64718 | | > show #!43 models |
| 64719 | | |
| 64720 | | > show #!40 models |
| 64721 | | |
| 64722 | | > hide #!1 models |
| 64723 | | |
| 64724 | | > show #55 models |
| 64725 | | |
| 64726 | | > hide #55 models |
| 64727 | | |
| 64728 | | > show #55 models |
| 64729 | | |
| 64730 | | > hide #55 models |
| 64731 | | |
| 64732 | | Drag select of 197 residues |
| 64733 | | |
| 64734 | | > select up |
| 64735 | | |
| 64736 | | 1963 atoms, 1993 bonds, 243 residues, 1 model selected |
| 64737 | | |
| 64738 | | > delete sel |
| 64739 | | |
| 64740 | | Drag select of 2 residues, 1 pseudobonds |
| 64741 | | |
| 64742 | | > delete sel |
| 64743 | | |
| 64744 | | > select add #54 |
| 64745 | | |
| 64746 | | 392 atoms, 391 bonds, 53 residues, 1 model selected |
| 64747 | | |
| 64748 | | > select subtract #54 |
| 64749 | | |
| 64750 | | Nothing selected |
| 64751 | | |
| 64752 | | > select add #54 |
| 64753 | | |
| 64754 | | 392 atoms, 391 bonds, 53 residues, 1 model selected |
| 64755 | | |
| 64756 | | > select subtract #54 |
| 64757 | | |
| 64758 | | Nothing selected |
| 64759 | | |
| 64760 | | > hide #!54 models |
| 64761 | | |
| 64762 | | > hide #!45 models |
| 64763 | | |
| 64764 | | > show #!45 models |
| 64765 | | |
| 64766 | | > hide #!45 models |
| 64767 | | |
| 64768 | | > hide #!44 models |
| 64769 | | |
| 64770 | | > hide #!43 models |
| 64771 | | |
| 64772 | | > show #!43 models |
| 64773 | | |
| 64774 | | > hide #!43 models |
| 64775 | | |
| 64776 | | > show #!43 models |
| 64777 | | |
| 64778 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 64779 | | > dataset/Chimera sessions/20240805_leaf_fitting_AF3_update_v1.cxs" |
| 64780 | | |
| 64781 | | > ui tool show Matchmaker |
| 64782 | | |
| 64783 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 64784 | | QTBUG which explains how to reproduce. |
| 64785 | | |
| 64786 | | > matchmaker #!40 to #43 |
| 64787 | | |
| 64788 | | Parameters |
| 64789 | | --- |
| 64790 | | Chain pairing | bb |
| 64791 | | Alignment algorithm | Needleman-Wunsch |
| 64792 | | Similarity matrix | BLOSUM-62 |
| 64793 | | SS fraction | 0.3 |
| 64794 | | Gap open (HH/SS/other) | 18/18/6 |
| 64795 | | Gap extend | 1 |
| 64796 | | SS matrix | | | H | S | O |
| 64797 | | ---|---|---|--- |
| 64798 | | H | 6 | -9 | -6 |
| 64799 | | S | | 6 | -6 |
| 64800 | | O | | | 4 |
| 64801 | | Iteration cutoff | 2 |
| 64802 | | |
| 64803 | | Matchmaker 20240711_copi_golph3_beta_S711-L953.cif, chain E (#43) with |
| 64804 | | fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif, chain B (#40), sequence |
| 64805 | | alignment score = 3704.9 |
| 64806 | | RMSD between 224 pruned atom pairs is 1.090 angstroms; (across all 243 pairs: |
| 64807 | | 1.912) |
| 64808 | | |
| 64809 | | |
| 64810 | | > show #!54 models |
| 64811 | | |
| 64812 | | > hide #!40 models |
| 64813 | | |
| 64814 | | > show #!40 models |
| 64815 | | |
| 64816 | | > hide #!40 models |
| 64817 | | |
| 64818 | | > show #!40 models |
| 64819 | | |
| 64820 | | > select add #40 |
| 64821 | | |
| 64822 | | 39508 atoms, 40254 bonds, 5000 residues, 1 model selected |
| 64823 | | Drag select of 3 residues |
| 64824 | | |
| 64825 | | > select add #40 |
| 64826 | | |
| 64827 | | 39524 atoms, 40254 bonds, 5002 residues, 3 models selected |
| 64828 | | |
| 64829 | | > ui mousemode right "translate selected models" |
| 64830 | | |
| 64831 | | > view matrix models |
| 64832 | | > #40,-0.63005,0.76404,0.13884,282.83,0.76732,0.64002,-0.040012,341.37,-0.11943,0.081328,-0.98951,347.6,#54,0.53204,0.47156,0.70325,293.71,0.013564,-0.8352,0.54978,332.87,0.84661,-0.28297,-0.45076,340.97 |
| 64833 | | |
| 64834 | | > view matrix models |
| 64835 | | > #40,-0.63005,0.76404,0.13884,284.05,0.76732,0.64002,-0.040012,341.21,-0.11943,0.081328,-0.98951,346.63,#54,0.53204,0.47156,0.70325,294.93,0.013564,-0.8352,0.54978,332.72,0.84661,-0.28297,-0.45076,339.99 |
| 64836 | | |
| 64837 | | > ui mousemode right "rotate selected models" |
| 64838 | | |
| 64839 | | > view matrix models |
| 64840 | | > #40,-0.43737,0.7871,0.43495,284.57,0.88971,0.44911,0.081929,343.29,-0.13085,0.42281,-0.89672,343.66,#54,0.2348,0.40499,0.88366,295.58,-0.22418,-0.862,0.45463,333.83,0.94584,-0.30485,-0.11161,338.75 |
| 64841 | | |
| 64842 | | > hide #!43 models |
| 64843 | | |
| 64844 | | > select subtract #40 |
| 64845 | | |
| 64846 | | 16 atoms, 2 residues, 3 models selected |
| 64847 | | |
| 64848 | | > select add #40 |
| 64849 | | |
| 64850 | | 39524 atoms, 40254 bonds, 5002 residues, 2 models selected |
| 64851 | | |
| 64852 | | > show #!43 models |
| 64853 | | |
| 64854 | | > hide #!43 models |
| 64855 | | |
| 64856 | | > show #!43 models |
| 64857 | | |
| 64858 | | > ui tool show Matchmaker |
| 64859 | | |
| 64860 | | > matchmaker #!40 to #43 |
| 64861 | | |
| 64862 | | Parameters |
| 64863 | | --- |
| 64864 | | Chain pairing | bb |
| 64865 | | Alignment algorithm | Needleman-Wunsch |
| 64866 | | Similarity matrix | BLOSUM-62 |
| 64867 | | SS fraction | 0.3 |
| 64868 | | Gap open (HH/SS/other) | 18/18/6 |
| 64869 | | Gap extend | 1 |
| 64870 | | SS matrix | | | H | S | O |
| 64871 | | ---|---|---|--- |
| 64872 | | H | 6 | -9 | -6 |
| 64873 | | S | | 6 | -6 |
| 64874 | | O | | | 4 |
| 64875 | | Iteration cutoff | 2 |
| 64876 | | |
| 64877 | | Matchmaker 20240711_copi_golph3_beta_S711-L953.cif, chain E (#43) with |
| 64878 | | fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif, chain B (#40), sequence |
| 64879 | | alignment score = 3704.9 |
| 64880 | | RMSD between 224 pruned atom pairs is 1.090 angstroms; (across all 243 pairs: |
| 64881 | | 1.912) |
| 64882 | | |
| 64883 | | |
| 64884 | | > select subtract #40 |
| 64885 | | |
| 64886 | | 16 atoms, 2 residues, 3 models selected |
| 64887 | | |
| 64888 | | > select add #54 |
| 64889 | | |
| 64890 | | 392 atoms, 391 bonds, 53 residues, 1 model selected |
| 64891 | | |
| 64892 | | > select subtract #54 |
| 64893 | | |
| 64894 | | Nothing selected |
| 64895 | | |
| 64896 | | > select add #54 |
| 64897 | | |
| 64898 | | 392 atoms, 391 bonds, 53 residues, 1 model selected |
| 64899 | | |
| 64900 | | > ui tool show Matchmaker |
| 64901 | | |
| 64902 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 64903 | | QTBUG which explains how to reproduce. |
| 64904 | | |
| 64905 | | > matchmaker #!54 to #40 |
| 64906 | | |
| 64907 | | Parameters |
| 64908 | | --- |
| 64909 | | Chain pairing | bb |
| 64910 | | Alignment algorithm | Needleman-Wunsch |
| 64911 | | Similarity matrix | BLOSUM-62 |
| 64912 | | SS fraction | 0.3 |
| 64913 | | Gap open (HH/SS/other) | 18/18/6 |
| 64914 | | Gap extend | 1 |
| 64915 | | SS matrix | | | H | S | O |
| 64916 | | ---|---|---|--- |
| 64917 | | H | 6 | -9 | -6 |
| 64918 | | S | | 6 | -6 |
| 64919 | | O | | | 4 |
| 64920 | | Iteration cutoff | 2 |
| 64921 | | |
| 64922 | | Matchmaker fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif, chain H (#40) |
| 64923 | | with 20240711_copi_golph3_golph3_M1-.cif, chain A (#54), sequence alignment |
| 64924 | | score = 198 |
| 64925 | | RMSD between 18 pruned atom pairs is 0.685 angstroms; (across all 47 pairs: |
| 64926 | | 13.519) |
| 64927 | | |
| 64928 | | |
| 64929 | | > view matrix models |
| 64930 | | > #54,-0.7223,0.66641,-0.1849,309.42,-0.25424,-0.5045,-0.82513,354.87,-0.64316,-0.54898,0.53382,337.9 |
| 64931 | | |
| 64932 | | > view matrix models |
| 64933 | | > #54,0.28193,0.78651,0.54948,302.7,-0.88272,-0.011762,0.46975,337.54,0.37592,-0.61747,0.69095,338.3 |
| 64934 | | |
| 64935 | | > ui mousemode right "translate selected models" |
| 64936 | | |
| 64937 | | > view matrix models |
| 64938 | | > #54,0.28193,0.78651,0.54948,304.53,-0.88272,-0.011762,0.46975,356.14,0.37592,-0.61747,0.69095,316.77 |
| 64939 | | |
| 64940 | | > ui mousemode right select |
| 64941 | | |
| 64942 | | > select subtract #54 |
| 64943 | | |
| 64944 | | Nothing selected |
| 64945 | | Drag select of 22 residues |
| 64946 | | |
| 64947 | | > delete sel |
| 64948 | | |
| 64949 | | > ui tool show Matchmaker |
| 64950 | | |
| 64951 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 64952 | | QTBUG which explains how to reproduce. |
| 64953 | | |
| 64954 | | > matchmaker #!54 to #40 |
| 64955 | | |
| 64956 | | Parameters |
| 64957 | | --- |
| 64958 | | Chain pairing | bb |
| 64959 | | Alignment algorithm | Needleman-Wunsch |
| 64960 | | Similarity matrix | BLOSUM-62 |
| 64961 | | SS fraction | 0.3 |
| 64962 | | Gap open (HH/SS/other) | 18/18/6 |
| 64963 | | Gap extend | 1 |
| 64964 | | SS matrix | | | H | S | O |
| 64965 | | ---|---|---|--- |
| 64966 | | H | 6 | -9 | -6 |
| 64967 | | S | | 6 | -6 |
| 64968 | | O | | | 4 |
| 64969 | | Iteration cutoff | 2 |
| 64970 | | |
| 64971 | | Matchmaker fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif, chain H (#40) |
| 64972 | | with 20240711_copi_golph3_golph3_M1-.cif, chain A (#54), sequence alignment |
| 64973 | | score = 188.4 |
| 64974 | | RMSD between 13 pruned atom pairs is 1.080 angstroms; (across all 31 pairs: |
| 64975 | | 10.676) |
| 64976 | | |
| 64977 | | |
| 64978 | | > hide #!54 models |
| 64979 | | |
| 64980 | | > show #!54 models |
| 64981 | | |
| 64982 | | > hide #!54 models |
| 64983 | | |
| 64984 | | > show #!54 models |
| 64985 | | |
| 64986 | | > show #!1 models |
| 64987 | | |
| 64988 | | > hide #!40 models |
| 64989 | | |
| 64990 | | > volume #1 level 0.005461 |
| 64991 | | |
| 64992 | | > hide #!1 models |
| 64993 | | |
| 64994 | | > fitmap #54 inMap #1 |
| 64995 | | |
| 64996 | | Fit molecule 20240711_copi_golph3_golph3_M1-.cif (#54) to map |
| 64997 | | relion_locres_filtered_20240326_GT.mrc (#1) using 229 atoms |
| 64998 | | average map value = 0.01065, steps = 468 |
| 64999 | | shifted from previous position = 13.9 |
| 65000 | | rotated from previous position = 160 degrees |
| 65001 | | atoms outside contour = 75, contour level = 0.0054608 |
| 65002 | | |
| 65003 | | Position of 20240711_copi_golph3_golph3_M1-.cif (#54) relative to |
| 65004 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 65005 | | Matrix rotation and translation |
| 65006 | | 0.50958231 0.51380053 0.69017018 237.15892878 |
| 65007 | | -0.26830832 0.85702309 -0.43991143 297.92467750 |
| 65008 | | -0.81751851 0.03899268 0.57458077 262.58133868 |
| 65009 | | Axis 0.27137979 0.85435943 -0.44319632 |
| 65010 | | Axis point 414.93124846 0.00000000 30.84815820 |
| 65011 | | Rotation angle (degrees) 61.92719804 |
| 65012 | | Shift along axis 202.51981387 |
| 65013 | | |
| 65014 | | |
| 65015 | | > show #!40 models |
| 65016 | | |
| 65017 | | > hide #!54 models |
| 65018 | | |
| 65019 | | > hide #!43 models |
| 65020 | | |
| 65021 | | > hide #!40 models |
| 65022 | | |
| 65023 | | > show #!43 models |
| 65024 | | |
| 65025 | | > show #!40 models |
| 65026 | | |
| 65027 | | > hide #!43 models |
| 65028 | | |
| 65029 | | > hide #!40 models |
| 65030 | | |
| 65031 | | > show #!44 models |
| 65032 | | |
| 65033 | | > show #!43 models |
| 65034 | | |
| 65035 | | > hide #!44 models |
| 65036 | | |
| 65037 | | > show #!54 models |
| 65038 | | |
| 65039 | | > ui mousemode right "translate selected models" |
| 65040 | | |
| 65041 | | > show #!1 models |
| 65042 | | |
| 65043 | | > select add #54 |
| 65044 | | |
| 65045 | | 229 atoms, 228 bonds, 31 residues, 1 model selected |
| 65046 | | |
| 65047 | | > ui mousemode right "rotate selected models" |
| 65048 | | |
| 65049 | | > view matrix models |
| 65050 | | > #54,0.53997,0.59854,0.59176,294.71,-0.11296,-0.64517,0.75564,334.85,0.83407,-0.47487,-0.28076,338.78 |
| 65051 | | |
| 65052 | | > view matrix models |
| 65053 | | > #54,0.65695,0.31239,0.68617,291.47,-0.33645,-0.693,0.63761,335.1,0.6747,-0.64974,-0.35016,337.55 |
| 65054 | | |
| 65055 | | > hide #!1 models |
| 65056 | | |
| 65057 | | > view matrix models |
| 65058 | | > #54,0.22732,0.11704,0.96676,286.7,-0.70153,-0.66886,0.24592,338.13,0.67541,-0.73412,-0.069938,334.41 |
| 65059 | | |
| 65060 | | > ui tool show Matchmaker |
| 65061 | | |
| 65062 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 65063 | | QTBUG which explains how to reproduce. |
| 65064 | | |
| 65065 | | > matchmaker #!54 to #40 |
| 65066 | | |
| 65067 | | Parameters |
| 65068 | | --- |
| 65069 | | Chain pairing | bb |
| 65070 | | Alignment algorithm | Needleman-Wunsch |
| 65071 | | Similarity matrix | BLOSUM-62 |
| 65072 | | SS fraction | 0.3 |
| 65073 | | Gap open (HH/SS/other) | 18/18/6 |
| 65074 | | Gap extend | 1 |
| 65075 | | SS matrix | | | H | S | O |
| 65076 | | ---|---|---|--- |
| 65077 | | H | 6 | -9 | -6 |
| 65078 | | S | | 6 | -6 |
| 65079 | | O | | | 4 |
| 65080 | | Iteration cutoff | 2 |
| 65081 | | |
| 65082 | | Matchmaker fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif, chain H (#40) |
| 65083 | | with 20240711_copi_golph3_golph3_M1-.cif, chain A (#54), sequence alignment |
| 65084 | | score = 188.4 |
| 65085 | | RMSD between 13 pruned atom pairs is 1.080 angstroms; (across all 31 pairs: |
| 65086 | | 10.676) |
| 65087 | | |
| 65088 | | |
| 65089 | | > select subtract #54 |
| 65090 | | |
| 65091 | | Nothing selected |
| 65092 | | |
| 65093 | | > show #!1 models |
| 65094 | | |
| 65095 | | > show #!40 models |
| 65096 | | |
| 65097 | | > hide #!1 models |
| 65098 | | |
| 65099 | | > hide #!40 models |
| 65100 | | |
| 65101 | | > show #!40 models |
| 65102 | | |
| 65103 | | > hide #!43 models |
| 65104 | | |
| 65105 | | > ui mousemode right select |
| 65106 | | |
| 65107 | | Drag select of 3 residues |
| 65108 | | |
| 65109 | | > select up |
| 65110 | | |
| 65111 | | 99 atoms, 98 bonds, 14 residues, 2 models selected |
| 65112 | | |
| 65113 | | > select clear |
| 65114 | | |
| 65115 | | Drag select of 19 residues |
| 65116 | | |
| 65117 | | > select up |
| 65118 | | |
| 65119 | | 163 atoms, 162 bonds, 22 residues, 2 models selected |
| 65120 | | |
| 65121 | | > delete sel |
| 65122 | | |
| 65123 | | > show #!43 models |
| 65124 | | |
| 65125 | | > hide #!43 models |
| 65126 | | |
| 65127 | | > show #!43 models |
| 65128 | | |
| 65129 | | > hide #!43 models |
| 65130 | | |
| 65131 | | > show #!43 models |
| 65132 | | |
| 65133 | | > ui tool show Matchmaker |
| 65134 | | |
| 65135 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 65136 | | QTBUG which explains how to reproduce. |
| 65137 | | |
| 65138 | | > matchmaker #!40 to #43 |
| 65139 | | |
| 65140 | | Parameters |
| 65141 | | --- |
| 65142 | | Chain pairing | bb |
| 65143 | | Alignment algorithm | Needleman-Wunsch |
| 65144 | | Similarity matrix | BLOSUM-62 |
| 65145 | | SS fraction | 0.3 |
| 65146 | | Gap open (HH/SS/other) | 18/18/6 |
| 65147 | | Gap extend | 1 |
| 65148 | | SS matrix | | | H | S | O |
| 65149 | | ---|---|---|--- |
| 65150 | | H | 6 | -9 | -6 |
| 65151 | | S | | 6 | -6 |
| 65152 | | O | | | 4 |
| 65153 | | Iteration cutoff | 2 |
| 65154 | | |
| 65155 | | Matchmaker 20240711_copi_golph3_beta_S711-L953.cif, chain E (#43) with |
| 65156 | | fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif, chain B (#40), sequence |
| 65157 | | alignment score = 3682.1 |
| 65158 | | RMSD between 205 pruned atom pairs is 1.038 angstroms; (across all 221 pairs: |
| 65159 | | 1.606) |
| 65160 | | |
| 65161 | | |
| 65162 | | > hide #!43 models |
| 65163 | | |
| 65164 | | Drag select of 7 residues |
| 65165 | | |
| 65166 | | > select up |
| 65167 | | |
| 65168 | | 7344 atoms, 7463 bonds, 931 residues, 2 models selected |
| 65169 | | |
| 65170 | | > select down |
| 65171 | | |
| 65172 | | 60 atoms, 7 residues, 2 models selected |
| 65173 | | |
| 65174 | | > delete sel |
| 65175 | | |
| 65176 | | > show #!43 models |
| 65177 | | |
| 65178 | | > hide #!40 models |
| 65179 | | |
| 65180 | | > show #!40 models |
| 65181 | | |
| 65182 | | > hide #!43 models |
| 65183 | | |
| 65184 | | > show #!43 models |
| 65185 | | |
| 65186 | | > hide #!43 models |
| 65187 | | |
| 65188 | | Drag select of 9 residues |
| 65189 | | |
| 65190 | | > select up |
| 65191 | | |
| 65192 | | 170 atoms, 172 bonds, 21 residues, 2 models selected |
| 65193 | | |
| 65194 | | > delete sel |
| 65195 | | |
| 65196 | | > ui tool show Matchmaker |
| 65197 | | |
| 65198 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 65199 | | QTBUG which explains how to reproduce. |
| 65200 | | |
| 65201 | | > matchmaker #!40 to #43 |
| 65202 | | |
| 65203 | | Parameters |
| 65204 | | --- |
| 65205 | | Chain pairing | bb |
| 65206 | | Alignment algorithm | Needleman-Wunsch |
| 65207 | | Similarity matrix | BLOSUM-62 |
| 65208 | | SS fraction | 0.3 |
| 65209 | | Gap open (HH/SS/other) | 18/18/6 |
| 65210 | | Gap extend | 1 |
| 65211 | | SS matrix | | | H | S | O |
| 65212 | | ---|---|---|--- |
| 65213 | | H | 6 | -9 | -6 |
| 65214 | | S | | 6 | -6 |
| 65215 | | O | | | 4 |
| 65216 | | Iteration cutoff | 2 |
| 65217 | | |
| 65218 | | Matchmaker 20240711_copi_golph3_beta_S711-L953.cif, chain E (#43) with |
| 65219 | | fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif, chain B (#40), sequence |
| 65220 | | alignment score = 3640.1 |
| 65221 | | RMSD between 175 pruned atom pairs is 0.948 angstroms; (across all 193 pairs: |
| 65222 | | 1.612) |
| 65223 | | |
| 65224 | | |
| 65225 | | > show #!43 models |
| 65226 | | |
| 65227 | | > hide #!43 models |
| 65228 | | |
| 65229 | | Drag select of 5 residues |
| 65230 | | |
| 65231 | | > select up |
| 65232 | | |
| 65233 | | 63 atoms, 64 bonds, 9 residues, 2 models selected |
| 65234 | | |
| 65235 | | > delete sel |
| 65236 | | |
| 65237 | | > select #40/B:914 |
| 65238 | | |
| 65239 | | 7 atoms, 7 bonds, 1 residue, 1 model selected |
| 65240 | | |
| 65241 | | > delete sel |
| 65242 | | |
| 65243 | | > select #40/B:912 |
| 65244 | | |
| 65245 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 65246 | | |
| 65247 | | > select #40/B:913 |
| 65248 | | |
| 65249 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 65250 | | |
| 65251 | | > delete sel |
| 65252 | | |
| 65253 | | Drag select of 13 residues |
| 65254 | | |
| 65255 | | > select up |
| 65256 | | |
| 65257 | | 207 atoms, 209 bonds, 26 residues, 2 models selected |
| 65258 | | |
| 65259 | | > delete sel |
| 65260 | | |
| 65261 | | Drag select of 6 residues |
| 65262 | | |
| 65263 | | > select up |
| 65264 | | |
| 65265 | | 63 atoms, 63 bonds, 9 residues, 2 models selected |
| 65266 | | |
| 65267 | | > delete sel |
| 65268 | | |
| 65269 | | > ui tool show Matchmaker |
| 65270 | | |
| 65271 | | > show #!43 models |
| 65272 | | |
| 65273 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 65274 | | QTBUG which explains how to reproduce. |
| 65275 | | |
| 65276 | | > hide #!43 models |
| 65277 | | |
| 65278 | | > show #!43 models |
| 65279 | | |
| 65280 | | > matchmaker #!40 to #43 |
| 65281 | | |
| 65282 | | Parameters |
| 65283 | | --- |
| 65284 | | Chain pairing | bb |
| 65285 | | Alignment algorithm | Needleman-Wunsch |
| 65286 | | Similarity matrix | BLOSUM-62 |
| 65287 | | SS fraction | 0.3 |
| 65288 | | Gap open (HH/SS/other) | 18/18/6 |
| 65289 | | Gap extend | 1 |
| 65290 | | SS matrix | | | H | S | O |
| 65291 | | ---|---|---|--- |
| 65292 | | H | 6 | -9 | -6 |
| 65293 | | S | | 6 | -6 |
| 65294 | | O | | | 4 |
| 65295 | | Iteration cutoff | 2 |
| 65296 | | |
| 65297 | | Matchmaker 20240711_copi_golph3_beta_S711-L953.cif, chain E (#43) with |
| 65298 | | fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif, chain B (#40), sequence |
| 65299 | | alignment score = 3556.1 |
| 65300 | | RMSD between 139 pruned atom pairs is 0.782 angstroms; (across all 147 pairs: |
| 65301 | | 1.500) |
| 65302 | | |
| 65303 | | |
| 65304 | | > select add #40 |
| 65305 | | |
| 65306 | | 38766 atoms, 39496 bonds, 3 pseudobonds, 4904 residues, 2 models selected |
| 65307 | | |
| 65308 | | > ui mousemode right "translate selected models" |
| 65309 | | |
| 65310 | | > view matrix models |
| 65311 | | > #40,-0.66043,0.73847,0.13602,283.55,0.7459,0.66603,0.0056796,340.95,-0.0864,0.10521,-0.99069,347.42 |
| 65312 | | |
| 65313 | | > ui mousemode right "rotate selected models" |
| 65314 | | |
| 65315 | | > view matrix models |
| 65316 | | > #40,-0.75937,0.64372,0.09483,283.83,0.63647,0.76515,-0.097246,338.49,-0.13516,-0.013489,-0.99073,348.53 |
| 65317 | | |
| 65318 | | > ui mousemode right "translate selected models" |
| 65319 | | |
| 65320 | | > view matrix models |
| 65321 | | > #40,-0.75937,0.64372,0.09483,283.83,0.63647,0.76515,-0.097246,338.96,-0.13516,-0.013489,-0.99073,347.45 |
| 65322 | | |
| 65323 | | > view matrix models |
| 65324 | | > #40,-0.75937,0.64372,0.09483,286.4,0.63647,0.76515,-0.097246,338.89,-0.13516,-0.013489,-0.99073,347.57 |
| 65325 | | |
| 65326 | | > ui mousemode right "rotate selected models" |
| 65327 | | |
| 65328 | | > view matrix models |
| 65329 | | > #40,-0.53707,0.84336,-0.017352,284.75,0.82966,0.52441,-0.19145,342.43,-0.15236,-0.11722,-0.98135,348.76 |
| 65330 | | |
| 65331 | | > view matrix models |
| 65332 | | > #40,-0.7265,0.67539,-0.1267,284.95,0.66634,0.64734,-0.37007,338.91,-0.16792,-0.35327,-0.92033,351.84 |
| 65333 | | |
| 65334 | | > view matrix models |
| 65335 | | > #40,-0.52618,0.83563,-0.15768,284.1,0.8447,0.49222,-0.21024,342.8,-0.09807,-0.24381,-0.96485,350.71 |
| 65336 | | |
| 65337 | | > view matrix models |
| 65338 | | > #40,-0.55523,0.74609,-0.36752,283.79,0.81558,0.40187,-0.41632,342.51,-0.16292,-0.5309,-0.83163,354.51 |
| 65339 | | |
| 65340 | | > view matrix models |
| 65341 | | > #40,-0.59018,0.77596,0.22264,286.61,0.78627,0.61504,-0.059293,341.84,-0.18294,0.14006,-0.9731,345.54 |
| 65342 | | |
| 65343 | | > view matrix models |
| 65344 | | > #40,-0.56806,0.78726,0.23987,286.71,0.8054,0.59172,-0.034679,342.38,-0.16924,0.17349,-0.97019,345.24 |
| 65345 | | |
| 65346 | | > ui mousemode right "translate selected models" |
| 65347 | | |
| 65348 | | > view matrix models |
| 65349 | | > #40,-0.56806,0.78726,0.23987,284.52,0.8054,0.59172,-0.034679,341.56,-0.16924,0.17349,-0.97019,347.55 |
| 65350 | | |
| 65351 | | > view matrix models |
| 65352 | | > #40,-0.56806,0.78726,0.23987,283.34,0.8054,0.59172,-0.034679,342.14,-0.16924,0.17349,-0.97019,346.83 |
| 65353 | | |
| 65354 | | > select subtract #40 |
| 65355 | | |
| 65356 | | 2 models selected |
| 65357 | | |
| 65358 | | > ui tool show Matchmaker |
| 65359 | | |
| 65360 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 65361 | | QTBUG which explains how to reproduce. |
| 65362 | | |
| 65363 | | > matchmaker #!54 to #40 |
| 65364 | | |
| 65365 | | Parameters |
| 65366 | | --- |
| 65367 | | Chain pairing | bb |
| 65368 | | Alignment algorithm | Needleman-Wunsch |
| 65369 | | Similarity matrix | BLOSUM-62 |
| 65370 | | SS fraction | 0.3 |
| 65371 | | Gap open (HH/SS/other) | 18/18/6 |
| 65372 | | Gap extend | 1 |
| 65373 | | SS matrix | | | H | S | O |
| 65374 | | ---|---|---|--- |
| 65375 | | H | 6 | -9 | -6 |
| 65376 | | S | | 6 | -6 |
| 65377 | | O | | | 4 |
| 65378 | | Iteration cutoff | 2 |
| 65379 | | |
| 65380 | | Matchmaker fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif, chain H (#40) |
| 65381 | | with 20240711_copi_golph3_golph3_M1-.cif, chain A (#54), sequence alignment |
| 65382 | | score = 188.4 |
| 65383 | | RMSD between 13 pruned atom pairs is 1.080 angstroms; (across all 31 pairs: |
| 65384 | | 10.676) |
| 65385 | | |
| 65386 | | |
| 65387 | | > hide #!40 models |
| 65388 | | |
| 65389 | | > show #!40 models |
| 65390 | | |
| 65391 | | > hide #!40 models |
| 65392 | | |
| 65393 | | > show #!40 models |
| 65394 | | |
| 65395 | | > hide #!40 models |
| 65396 | | |
| 65397 | | > show #!40 models |
| 65398 | | |
| 65399 | | > hide #!40 models |
| 65400 | | |
| 65401 | | > show #!40 models |
| 65402 | | |
| 65403 | | > hide #!40 models |
| 65404 | | |
| 65405 | | > show #!40 models |
| 65406 | | |
| 65407 | | > hide #!40 models |
| 65408 | | |
| 65409 | | > show #!1 models |
| 65410 | | |
| 65411 | | > hide #!1 models |
| 65412 | | |
| 65413 | | > show #55 models |
| 65414 | | |
| 65415 | | > hide #!54 models |
| 65416 | | |
| 65417 | | > show #!54 models |
| 65418 | | |
| 65419 | | > hide #!54 models |
| 65420 | | |
| 65421 | | > show #!1 models |
| 65422 | | |
| 65423 | | > hide #!1 models |
| 65424 | | |
| 65425 | | > hide #!43 models |
| 65426 | | |
| 65427 | | > ui mousemode right select |
| 65428 | | |
| 65429 | | Drag select of 18 residues |
| 65430 | | |
| 65431 | | > select up |
| 65432 | | |
| 65433 | | 225 atoms, 224 bonds, 30 residues, 1 model selected |
| 65434 | | |
| 65435 | | > delete sel |
| 65436 | | |
| 65437 | | Drag select of 21 residues |
| 65438 | | |
| 65439 | | > select up |
| 65440 | | |
| 65441 | | 167 atoms, 166 bonds, 23 residues, 1 model selected |
| 65442 | | |
| 65443 | | > delete sel |
| 65444 | | |
| 65445 | | > select #55/A:54 |
| 65446 | | |
| 65447 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 65448 | | |
| 65449 | | > delete sel |
| 65450 | | |
| 65451 | | > show #!1 models |
| 65452 | | |
| 65453 | | > fitmap #55 inMap #1 |
| 65454 | | |
| 65455 | | Fit molecule 20240711_copi_golph3_golph3_.cif (#55) to map |
| 65456 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1971 atoms |
| 65457 | | average map value = 0.008364, steps = 44 |
| 65458 | | shifted from previous position = 0.155 |
| 65459 | | rotated from previous position = 0.745 degrees |
| 65460 | | atoms outside contour = 620, contour level = 0.0054608 |
| 65461 | | |
| 65462 | | Position of 20240711_copi_golph3_golph3_.cif (#55) relative to |
| 65463 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 65464 | | Matrix rotation and translation |
| 65465 | | 0.52149365 0.47001719 0.71212935 230.49002012 |
| 65466 | | 0.01135098 -0.83835072 0.54501305 257.47176105 |
| 65467 | | 0.85317966 -0.27613748 -0.44252974 262.84155594 |
| 65468 | | Axis -0.86338510 -0.14830501 -0.48225698 |
| 65469 | | Axis point -0.00000000 121.73438799 37.23458310 |
| 65470 | | Rotation angle (degrees) 151.60540101 |
| 65471 | | Shift along axis -363.94317469 |
| 65472 | | |
| 65473 | | |
| 65474 | | > fitmap #55 inMap #1 |
| 65475 | | |
| 65476 | | Fit molecule 20240711_copi_golph3_golph3_.cif (#55) to map |
| 65477 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1971 atoms |
| 65478 | | average map value = 0.008363, steps = 40 |
| 65479 | | shifted from previous position = 0.0326 |
| 65480 | | rotated from previous position = 0.0372 degrees |
| 65481 | | atoms outside contour = 617, contour level = 0.0054608 |
| 65482 | | |
| 65483 | | Position of 20240711_copi_golph3_golph3_.cif (#55) relative to |
| 65484 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 65485 | | Matrix rotation and translation |
| 65486 | | 0.52173357 0.47042314 0.71168543 230.53965220 |
| 65487 | | 0.01161038 -0.83806431 0.54544790 257.46018997 |
| 65488 | | 0.85302947 -0.27631555 -0.44270808 262.85484380 |
| 65489 | | Axis -0.86344537 -0.14851337 -0.48208491 |
| 65490 | | Axis point 0.00000000 121.71304452 37.24831631 |
| 65491 | | Rotation angle (degrees) 151.58444406 |
| 65492 | | Shift along axis -364.01303162 |
| 65493 | | |
| 65494 | | |
| 65495 | | > hide #!1 models |
| 65496 | | |
| 65497 | | > show #!54 models |
| 65498 | | |
| 65499 | | > show #!43 models |
| 65500 | | |
| 65501 | | > show #34.1 models |
| 65502 | | |
| 65503 | | > hide #!43 models |
| 65504 | | |
| 65505 | | > show #41 models |
| 65506 | | |
| 65507 | | > show #!43 models |
| 65508 | | |
| 65509 | | > show #!44 models |
| 65510 | | |
| 65511 | | > show #42 models |
| 65512 | | |
| 65513 | | > show #39 models |
| 65514 | | |
| 65515 | | > show #38 models |
| 65516 | | |
| 65517 | | > show #!45 models |
| 65518 | | |
| 65519 | | > show #46 models |
| 65520 | | |
| 65521 | | > show #47 models |
| 65522 | | |
| 65523 | | > show #48 models |
| 65524 | | |
| 65525 | | > show #!49 models |
| 65526 | | |
| 65527 | | > show #50 models |
| 65528 | | |
| 65529 | | > show #51 models |
| 65530 | | |
| 65531 | | > show #52 models |
| 65532 | | |
| 65533 | | > show #53 models |
| 65534 | | |
| 65535 | | > show #!1 models |
| 65536 | | |
| 65537 | | > hide #34.1 models |
| 65538 | | |
| 65539 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 65540 | | > dataset/Chimera sessions/20240805_leaf_fitting_AF3_update_v2.cxs" |
| 65541 | | |
| 65542 | | > hide #41 models |
| 65543 | | |
| 65544 | | > hide #42 models |
| 65545 | | |
| 65546 | | > hide #!43 models |
| 65547 | | |
| 65548 | | > hide #!44 models |
| 65549 | | |
| 65550 | | > hide #!45 models |
| 65551 | | |
| 65552 | | > hide #46 models |
| 65553 | | |
| 65554 | | > hide #47 models |
| 65555 | | |
| 65556 | | > hide #48 models |
| 65557 | | |
| 65558 | | > hide #!49 models |
| 65559 | | |
| 65560 | | > hide #50 models |
| 65561 | | |
| 65562 | | > hide #51 models |
| 65563 | | |
| 65564 | | > hide #53 models |
| 65565 | | |
| 65566 | | > hide #52 models |
| 65567 | | |
| 65568 | | > hide #!54 models |
| 65569 | | |
| 65570 | | > hide #55 models |
| 65571 | | |
| 65572 | | > hide #!1 models |
| 65573 | | |
| 65574 | | Drag select of 10 residues |
| 65575 | | |
| 65576 | | > select up |
| 65577 | | |
| 65578 | | 74 atoms, 75 bonds, 11 residues, 1 model selected |
| 65579 | | |
| 65580 | | > delete sel |
| 65581 | | |
| 65582 | | > hide #39 models |
| 65583 | | |
| 65584 | | > show #39 models |
| 65585 | | |
| 65586 | | > hide #38 models |
| 65587 | | |
| 65588 | | > fitmap #39 inMap #1 |
| 65589 | | |
| 65590 | | Fit molecule 20240711_copi_golph3_alpha_I592-G900.cif (#39) to map |
| 65591 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2329 atoms |
| 65592 | | average map value = 0.00752, steps = 44 |
| 65593 | | shifted from previous position = 0.0203 |
| 65594 | | rotated from previous position = 0.018 degrees |
| 65595 | | atoms outside contour = 1192, contour level = 0.0054608 |
| 65596 | | |
| 65597 | | Position of 20240711_copi_golph3_alpha_I592-G900.cif (#39) relative to |
| 65598 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 65599 | | Matrix rotation and translation |
| 65600 | | 0.58557972 0.32386603 0.74310644 225.70705057 |
| 65601 | | -0.13511522 -0.86489862 0.48341933 254.83102732 |
| 65602 | | 0.79927484 -0.38348555 -0.46270787 264.72353564 |
| 65603 | | Axis -0.88232925 -0.05716777 -0.46714766 |
| 65604 | | Axis point 0.00000000 136.04140665 37.56516457 |
| 65605 | | Rotation angle (degrees) 150.57661567 |
| 65606 | | Shift along axis -337.38103518 |
| 65607 | | |
| 65608 | | Drag select of 9 residues |
| 65609 | | |
| 65610 | | > delete sel |
| 65611 | | |
| 65612 | | > fitmap #39 inMap #1 |
| 65613 | | |
| 65614 | | Fit molecule 20240711_copi_golph3_alpha_I592-G900.cif (#39) to map |
| 65615 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2256 atoms |
| 65616 | | average map value = 0.007692, steps = 44 |
| 65617 | | shifted from previous position = 0.0477 |
| 65618 | | rotated from previous position = 0.0822 degrees |
| 65619 | | atoms outside contour = 1123, contour level = 0.0054608 |
| 65620 | | |
| 65621 | | Position of 20240711_copi_golph3_alpha_I592-G900.cif (#39) relative to |
| 65622 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 65623 | | Matrix rotation and translation |
| 65624 | | 0.58606274 0.32257416 0.74328755 225.67480968 |
| 65625 | | -0.13550295 -0.86540137 0.48241001 254.81278925 |
| 65626 | | 0.79885507 -0.38344018 -0.46346975 264.68459062 |
| 65627 | | Axis -0.88250171 -0.05663616 -0.46688658 |
| 65628 | | Axis point 0.00000000 136.09588960 37.63718480 |
| 65629 | | Rotation angle (degrees) 150.62222794 |
| 65630 | | Shift along axis -337.16770619 |
| 65631 | | |
| 65632 | | |
| 65633 | | > fitmap #39 inMap #1 |
| 65634 | | |
| 65635 | | Fit molecule 20240711_copi_golph3_alpha_I592-G900.cif (#39) to map |
| 65636 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2256 atoms |
| 65637 | | average map value = 0.007693, steps = 44 |
| 65638 | | shifted from previous position = 0.036 |
| 65639 | | rotated from previous position = 0.0445 degrees |
| 65640 | | atoms outside contour = 1120, contour level = 0.0054608 |
| 65641 | | |
| 65642 | | Position of 20240711_copi_golph3_alpha_I592-G900.cif (#39) relative to |
| 65643 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 65644 | | Matrix rotation and translation |
| 65645 | | 0.58571763 0.32326751 0.74325835 225.67941678 |
| 65646 | | -0.13520957 -0.86519945 0.48285431 254.80826181 |
| 65647 | | 0.79915782 -0.38331193 -0.46305371 264.72109065 |
| 65648 | | Axis -0.88238808 -0.05694638 -0.46706358 |
| 65649 | | Axis point 0.00000000 136.05210514 37.61678218 |
| 65650 | | Rotation angle (degrees) 150.60629759 |
| 65651 | | Shift along axis -337.28881532 |
| 65652 | | |
| 65653 | | |
| 65654 | | > fitmap #39 inMap #1 |
| 65655 | | |
| 65656 | | Fit molecule 20240711_copi_golph3_alpha_I592-G900.cif (#39) to map |
| 65657 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2256 atoms |
| 65658 | | average map value = 0.007693, steps = 48 |
| 65659 | | shifted from previous position = 0.0158 |
| 65660 | | rotated from previous position = 0.0402 degrees |
| 65661 | | atoms outside contour = 1121, contour level = 0.0054608 |
| 65662 | | |
| 65663 | | Position of 20240711_copi_golph3_alpha_I592-G900.cif (#39) relative to |
| 65664 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 65665 | | Matrix rotation and translation |
| 65666 | | 0.58587561 0.32288083 0.74330191 225.68344466 |
| 65667 | | -0.13585522 -0.86509142 0.48286664 254.79486458 |
| 65668 | | 0.79893249 -0.38388123 -0.46297092 264.71592302 |
| 65669 | | Axis -0.88242423 -0.05663674 -0.46703294 |
| 65670 | | Axis point 0.00000000 136.10226685 37.58138913 |
| 65671 | | Rotation angle (degrees) 150.58594517 |
| 65672 | | Shift along axis -337.21034398 |
| 65673 | | |
| 65674 | | |
| 65675 | | > fitmap #39 inMap #1 |
| 65676 | | |
| 65677 | | Fit molecule 20240711_copi_golph3_alpha_I592-G900.cif (#39) to map |
| 65678 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2256 atoms |
| 65679 | | average map value = 0.007693, steps = 48 |
| 65680 | | shifted from previous position = 0.00851 |
| 65681 | | rotated from previous position = 0.0433 degrees |
| 65682 | | atoms outside contour = 1121, contour level = 0.0054608 |
| 65683 | | |
| 65684 | | Position of 20240711_copi_golph3_alpha_I592-G900.cif (#39) relative to |
| 65685 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 65686 | | Matrix rotation and translation |
| 65687 | | 0.58579119 0.32343012 0.74312963 225.68292591 |
| 65688 | | -0.13514934 -0.86509974 0.48304978 254.81625439 |
| 65689 | | 0.79911410 -0.38339978 -0.46305644 264.72194129 |
| 65690 | | Axis -0.88240463 -0.05701539 -0.46702388 |
| 65691 | | Axis point 0.00000000 136.05373122 37.61313871 |
| 65692 | | Rotation angle (degrees) 150.59634525 |
| 65693 | | Shift along axis -337.30357599 |
| 65694 | | |
| 65695 | | Drag select of 5 residues |
| 65696 | | |
| 65697 | | > select up |
| 65698 | | |
| 65699 | | 229 atoms, 232 bonds, 31 residues, 1 model selected |
| 65700 | | |
| 65701 | | > delete sel |
| 65702 | | |
| 65703 | | > fitmap #39 inMap #1 |
| 65704 | | |
| 65705 | | Fit molecule 20240711_copi_golph3_alpha_I592-G900.cif (#39) to map |
| 65706 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2027 atoms |
| 65707 | | average map value = 0.008501, steps = 44 |
| 65708 | | shifted from previous position = 0.0433 |
| 65709 | | rotated from previous position = 0.229 degrees |
| 65710 | | atoms outside contour = 896, contour level = 0.0054608 |
| 65711 | | |
| 65712 | | Position of 20240711_copi_golph3_alpha_I592-G900.cif (#39) relative to |
| 65713 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 65714 | | Matrix rotation and translation |
| 65715 | | 0.58769912 0.32000785 0.74310479 225.59331066 |
| 65716 | | -0.13607732 -0.86627875 0.48067046 254.70507979 |
| 65717 | | 0.79755421 -0.38360932 -0.46556544 264.58615592 |
| 65718 | | Axis -0.88304153 -0.05563140 -0.46598585 |
| 65719 | | Axis point 0.00000000 136.18804161 37.84144087 |
| 65720 | | Rotation angle (degrees) 150.70038215 |
| 65721 | | Shift along axis -336.67126673 |
| 65722 | | |
| 65723 | | |
| 65724 | | > fitmap #39 inMap #1 |
| 65725 | | |
| 65726 | | Fit molecule 20240711_copi_golph3_alpha_I592-G900.cif (#39) to map |
| 65727 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2027 atoms |
| 65728 | | average map value = 0.0085, steps = 44 |
| 65729 | | shifted from previous position = 0.0109 |
| 65730 | | rotated from previous position = 0.0851 degrees |
| 65731 | | atoms outside contour = 898, contour level = 0.0054608 |
| 65732 | | |
| 65733 | | Position of 20240711_copi_golph3_alpha_I592-G900.cif (#39) relative to |
| 65734 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 65735 | | Matrix rotation and translation |
| 65736 | | 0.58870044 0.31899070 0.74274943 225.56253675 |
| 65737 | | -0.13658149 -0.86638189 0.48034146 254.67400066 |
| 65738 | | 0.79672912 -0.38422305 -0.46647118 264.52906130 |
| 65739 | | Axis -0.88334458 -0.05515223 -0.46546813 |
| 65740 | | Axis point 0.00000000 136.26566156 37.89878558 |
| 65741 | | Rotation angle (degrees) 150.70082407 |
| 65742 | | Shift along axis -336.42513097 |
| 65743 | | |
| 65744 | | Drag select of 7 residues |
| 65745 | | |
| 65746 | | > delete sel |
| 65747 | | |
| 65748 | | Drag select of 4 residues |
| 65749 | | |
| 65750 | | > delete sel |
| 65751 | | |
| 65752 | | Drag select of 4 residues |
| 65753 | | |
| 65754 | | > delete sel |
| 65755 | | |
| 65756 | | Drag select of 4 residues |
| 65757 | | |
| 65758 | | > select up |
| 65759 | | |
| 65760 | | 61 atoms, 60 bonds, 10 residues, 1 model selected |
| 65761 | | |
| 65762 | | > select clear |
| 65763 | | |
| 65764 | | Drag select of 6 residues |
| 65765 | | |
| 65766 | | > delete sel |
| 65767 | | |
| 65768 | | Drag select of 3 residues |
| 65769 | | |
| 65770 | | > delete sel |
| 65771 | | |
| 65772 | | > select #39/D:825 |
| 65773 | | |
| 65774 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 65775 | | |
| 65776 | | > delete sel |
| 65777 | | |
| 65778 | | > fitmap #39 inMap #1 |
| 65779 | | |
| 65780 | | Fit molecule 20240711_copi_golph3_alpha_I592-G900.cif (#39) to map |
| 65781 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1856 atoms |
| 65782 | | average map value = 0.009053, steps = 48 |
| 65783 | | shifted from previous position = 0.123 |
| 65784 | | rotated from previous position = 1.09 degrees |
| 65785 | | atoms outside contour = 737, contour level = 0.0054608 |
| 65786 | | |
| 65787 | | Position of 20240711_copi_golph3_alpha_I592-G900.cif (#39) relative to |
| 65788 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 65789 | | Matrix rotation and translation |
| 65790 | | 0.60090436 0.30593525 0.73845621 225.14344658 |
| 65791 | | -0.13729666 -0.87061879 0.47241141 254.16814824 |
| 65792 | | 0.78744116 -0.38526165 -0.48115474 263.62381403 |
| 65793 | | Axis -0.88724197 -0.05067374 -0.45851266 |
| 65794 | | Axis point 0.00000000 136.73303752 39.17666397 |
| 65795 | | Rotation angle (degrees) 151.09645074 |
| 65796 | | Shift along axis -333.51122226 |
| 65797 | | |
| 65798 | | |
| 65799 | | > show #!1 models |
| 65800 | | |
| 65801 | | > fitmap #39 inMap #1 |
| 65802 | | |
| 65803 | | Fit molecule 20240711_copi_golph3_alpha_I592-G900.cif (#39) to map |
| 65804 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1856 atoms |
| 65805 | | average map value = 0.009053, steps = 44 |
| 65806 | | shifted from previous position = 0.0157 |
| 65807 | | rotated from previous position = 0.0987 degrees |
| 65808 | | atoms outside contour = 737, contour level = 0.0054608 |
| 65809 | | |
| 65810 | | Position of 20240711_copi_golph3_alpha_I592-G900.cif (#39) relative to |
| 65811 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 65812 | | Matrix rotation and translation |
| 65813 | | 0.60197049 0.30463672 0.73812465 225.11508006 |
| 65814 | | -0.13793837 -0.87080078 0.47188876 254.14705450 |
| 65815 | | 0.78651417 -0.38587882 -0.48217528 263.55192322 |
| 65816 | | Axis -0.88756662 -0.05007058 -0.45795025 |
| 65817 | | Axis point 0.00000000 136.82747679 39.23508340 |
| 65818 | | Rotation angle (degrees) 151.10453619 |
| 65819 | | Shift along axis -333.22359063 |
| 65820 | | |
| 65821 | | |
| 65822 | | > show #38 models |
| 65823 | | |
| 65824 | | > show #41 models |
| 65825 | | |
| 65826 | | > show #42 models |
| 65827 | | |
| 65828 | | Drag select of 1 relion_locres_filtered_20240326_GT.mrc , 12 residues |
| 65829 | | |
| 65830 | | > select clear |
| 65831 | | |
| 65832 | | Drag select of 12 residues |
| 65833 | | |
| 65834 | | > select up |
| 65835 | | |
| 65836 | | 104 atoms, 103 bonds, 13 residues, 1 model selected |
| 65837 | | |
| 65838 | | > delete sel |
| 65839 | | |
| 65840 | | Drag select of 5 residues |
| 65841 | | |
| 65842 | | > select up |
| 65843 | | |
| 65844 | | 58 atoms, 57 bonds, 7 residues, 1 model selected |
| 65845 | | |
| 65846 | | > delete sel |
| 65847 | | |
| 65848 | | Drag select of 11 residues |
| 65849 | | |
| 65850 | | > select down |
| 65851 | | |
| 65852 | | 87 atoms, 11 residues, 1 model selected |
| 65853 | | |
| 65854 | | > select up |
| 65855 | | |
| 65856 | | 357 atoms, 363 bonds, 47 residues, 1 model selected |
| 65857 | | |
| 65858 | | > delete sel |
| 65859 | | |
| 65860 | | > hide #!1 models |
| 65861 | | |
| 65862 | | > show #34.6 models |
| 65863 | | |
| 65864 | | > hide #34.6 models |
| 65865 | | |
| 65866 | | > hide #42 models |
| 65867 | | |
| 65868 | | > hide #41 models |
| 65869 | | |
| 65870 | | > show #34.6 models |
| 65871 | | |
| 65872 | | > hide #34.6 models |
| 65873 | | |
| 65874 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 65875 | | > dataset/Chimera sessions/20240805_leaf_fitting_AF3_final.cxs" |
| 65876 | | |
| 65877 | | > show #41 models |
| 65878 | | |
| 65879 | | > show #42 models |
| 65880 | | |
| 65881 | | > show #!1 models |
| 65882 | | |
| 65883 | | > show #!43 models |
| 65884 | | |
| 65885 | | > show #!44 models |
| 65886 | | |
| 65887 | | > show #!45 models |
| 65888 | | |
| 65889 | | > hide #!44 models |
| 65890 | | |
| 65891 | | > hide #!43 models |
| 65892 | | |
| 65893 | | > show #!44 models |
| 65894 | | |
| 65895 | | > hide #!1 models |
| 65896 | | |
| 65897 | | > show #!1 models |
| 65898 | | |
| 65899 | | > hide #!1 models |
| 65900 | | |
| 65901 | | Drag select of 8 residues |
| 65902 | | |
| 65903 | | > select up |
| 65904 | | |
| 65905 | | 334 atoms, 338 bonds, 44 residues, 1 model selected |
| 65906 | | |
| 65907 | | > select down |
| 65908 | | |
| 65909 | | 60 atoms, 8 residues, 1 model selected |
| 65910 | | |
| 65911 | | > hide #41 models |
| 65912 | | |
| 65913 | | > hide #42 models |
| 65914 | | |
| 65915 | | > select add #44 |
| 65916 | | |
| 65917 | | 2760 atoms, 2795 bonds, 349 residues, 1 model selected |
| 65918 | | |
| 65919 | | > select subtract #44 |
| 65920 | | |
| 65921 | | Nothing selected |
| 65922 | | Drag select of 27 residues |
| 65923 | | |
| 65924 | | > delete sel |
| 65925 | | |
| 65926 | | > select #44/E:535 |
| 65927 | | |
| 65928 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 65929 | | |
| 65930 | | > select #44/E:507 |
| 65931 | | |
| 65932 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 65933 | | |
| 65934 | | > select clear |
| 65935 | | |
| 65936 | | > select #44/E:535 |
| 65937 | | |
| 65938 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 65939 | | |
| 65940 | | > delete sel |
| 65941 | | |
| 65942 | | > select #44/E:507 |
| 65943 | | |
| 65944 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 65945 | | |
| 65946 | | > delete sel |
| 65947 | | |
| 65948 | | > select #44/E:506 |
| 65949 | | |
| 65950 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 65951 | | |
| 65952 | | > delete sel |
| 65953 | | |
| 65954 | | > select #44/E:505 |
| 65955 | | |
| 65956 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 65957 | | |
| 65958 | | > delete sel |
| 65959 | | |
| 65960 | | > select #44/E:504 |
| 65961 | | |
| 65962 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 65963 | | |
| 65964 | | > delete sel |
| 65965 | | |
| 65966 | | > select #44/E:503 |
| 65967 | | |
| 65968 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 65969 | | |
| 65970 | | > delete sel |
| 65971 | | |
| 65972 | | > select #44/E:502 |
| 65973 | | |
| 65974 | | 7 atoms, 7 bonds, 1 residue, 1 model selected |
| 65975 | | |
| 65976 | | > delete sel |
| 65977 | | |
| 65978 | | > select #44/E:501 |
| 65979 | | |
| 65980 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 65981 | | |
| 65982 | | > delete sel |
| 65983 | | |
| 65984 | | > select #44/E:500 |
| 65985 | | |
| 65986 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 65987 | | |
| 65988 | | > delete sel |
| 65989 | | |
| 65990 | | > show #!1 models |
| 65991 | | |
| 65992 | | > hide #!1 models |
| 65993 | | |
| 65994 | | > show #!1 models |
| 65995 | | |
| 65996 | | > show #41 models |
| 65997 | | |
| 65998 | | > show #42 models |
| 65999 | | |
| 66000 | | > show #!43 models |
| 66001 | | |
| 66002 | | > fitmap #38 inMap #1 |
| 66003 | | |
| 66004 | | Fit molecule 20240711_copi_golph3_alpha_M1-T591.cif (#38) to map |
| 66005 | | relion_locres_filtered_20240326_GT.mrc (#1) using 4763 atoms |
| 66006 | | average map value = 0.008699, steps = 28 |
| 66007 | | shifted from previous position = 0.0236 |
| 66008 | | rotated from previous position = 0.0106 degrees |
| 66009 | | atoms outside contour = 1690, contour level = 0.0054608 |
| 66010 | | |
| 66011 | | Position of 20240711_copi_golph3_alpha_M1-T591.cif (#38) relative to |
| 66012 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 66013 | | Matrix rotation and translation |
| 66014 | | 0.57925682 0.37627919 0.72310131 229.40958245 |
| 66015 | | -0.04014637 -0.87283727 0.48635724 258.31641239 |
| 66016 | | 0.81415588 -0.31075565 -0.49049070 263.88915314 |
| 66017 | | Axis -0.88182995 -0.10073184 -0.46068322 |
| 66018 | | Axis point -0.00000000 129.96563876 41.80706218 |
| 66019 | | Rotation angle (degrees) 153.13016134 |
| 66020 | | Shift along axis -349.89023416 |
| 66021 | | |
| 66022 | | |
| 66023 | | > fitmap #39 inMap #1 |
| 66024 | | |
| 66025 | | Fit molecule 20240711_copi_golph3_alpha_I592-G900.cif (#39) to map |
| 66026 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1856 atoms |
| 66027 | | average map value = 0.009052, steps = 44 |
| 66028 | | shifted from previous position = 0.0187 |
| 66029 | | rotated from previous position = 0.0387 degrees |
| 66030 | | atoms outside contour = 737, contour level = 0.0054608 |
| 66031 | | |
| 66032 | | Position of 20240711_copi_golph3_alpha_I592-G900.cif (#39) relative to |
| 66033 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 66034 | | Matrix rotation and translation |
| 66035 | | 0.60146802 0.30500027 0.73838408 225.11946579 |
| 66036 | | -0.13791350 -0.87073810 0.47201169 254.14091566 |
| 66037 | | 0.78690284 -0.38573307 -0.48165747 263.58198922 |
| 66038 | | Axis -0.88741319 -0.05019697 -0.45823366 |
| 66039 | | Axis point 0.00000000 136.79731935 39.19893697 |
| 66040 | | Rotation angle (degrees) 151.09991048 |
| 66041 | | Shift along axis -333.31322885 |
| 66042 | | |
| 66043 | | |
| 66044 | | > fitmap #41 inMap #1 |
| 66045 | | |
| 66046 | | Fit molecule 20240711_copi_golph3_betaprime_M1-S586.cif (#41) to map |
| 66047 | | relion_locres_filtered_20240326_GT.mrc (#1) using 4686 atoms |
| 66048 | | average map value = 0.01004, steps = 28 |
| 66049 | | shifted from previous position = 0.0318 |
| 66050 | | rotated from previous position = 0.0303 degrees |
| 66051 | | atoms outside contour = 1305, contour level = 0.0054608 |
| 66052 | | |
| 66053 | | Position of 20240711_copi_golph3_betaprime_M1-S586.cif (#41) relative to |
| 66054 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 66055 | | Matrix rotation and translation |
| 66056 | | 0.59284247 0.33283311 0.73332116 230.50393053 |
| 66057 | | -0.03649999 -0.89855685 0.43733664 249.48895575 |
| 66058 | | 0.80449087 -0.28603795 -0.52055426 258.87555685 |
| 66059 | | Axis -0.88723039 -0.08729077 -0.45299289 |
| 66060 | | Axis point 0.00000000 125.80360538 44.23524482 |
| 66061 | | Rotation angle (degrees) 155.94214965 |
| 66062 | | Shift along axis -343.55696233 |
| 66063 | | |
| 66064 | | |
| 66065 | | > fitmap #42 inMap #1 |
| 66066 | | |
| 66067 | | Fit molecule 20240711_copi_golph3_betaprime_L587-D905.cif (#42) to map |
| 66068 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2009 atoms |
| 66069 | | average map value = 0.009611, steps = 44 |
| 66070 | | shifted from previous position = 0.0988 |
| 66071 | | rotated from previous position = 0.255 degrees |
| 66072 | | atoms outside contour = 808, contour level = 0.0054608 |
| 66073 | | |
| 66074 | | Position of 20240711_copi_golph3_betaprime_L587-D905.cif (#42) relative to |
| 66075 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 66076 | | Matrix rotation and translation |
| 66077 | | 0.59344452 0.33741789 0.73073440 226.60067008 |
| 66078 | | -0.11753036 -0.86182622 0.49339860 254.74842883 |
| 66079 | | 0.79624759 -0.37868817 -0.47178920 265.07497120 |
| 66080 | | Axis -0.88464715 -0.06645675 -0.46150072 |
| 66081 | | Axis point 0.00000000 134.99509957 38.84469376 |
| 66082 | | Rotation angle (degrees) 150.46857105 |
| 66083 | | Shift along axis -339.72367958 |
| 66084 | | |
| 66085 | | |
| 66086 | | > fitmap #43 inMap #1 |
| 66087 | | |
| 66088 | | Fit molecule 20240711_copi_golph3_beta_S711-L953.cif (#43) to map |
| 66089 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1872 atoms |
| 66090 | | average map value = 0.008979, steps = 48 |
| 66091 | | shifted from previous position = 0.0388 |
| 66092 | | rotated from previous position = 0.0207 degrees |
| 66093 | | atoms outside contour = 594, contour level = 0.0054608 |
| 66094 | | |
| 66095 | | Position of 20240711_copi_golph3_beta_S711-L953.cif (#43) relative to |
| 66096 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 66097 | | Matrix rotation and translation |
| 66098 | | 0.55236813 0.42744455 0.71566794 229.22862876 |
| 66099 | | -0.07118249 -0.83120460 0.55139094 257.71229740 |
| 66100 | | 0.83055554 -0.35551381 -0.42870436 265.08166205 |
| 66101 | | Axis -0.87093568 -0.11033100 -0.47885082 |
| 66102 | | Axis point 0.00000000 129.66807422 34.28649497 |
| 66103 | | Rotation angle (degrees) 148.62415981 |
| 66104 | | Shift along axis -355.01161890 |
| 66105 | | |
| 66106 | | |
| 66107 | | > fitmap #44 inMap #1 |
| 66108 | | |
| 66109 | | Fit molecule 20240711_copi_golph3_beta_H311-E659.cif (#44) to map |
| 66110 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2488 atoms |
| 66111 | | average map value = 0.01049, steps = 48 |
| 66112 | | shifted from previous position = 0.0818 |
| 66113 | | rotated from previous position = 0.312 degrees |
| 66114 | | atoms outside contour = 856, contour level = 0.0054608 |
| 66115 | | |
| 66116 | | Position of 20240711_copi_golph3_beta_H311-E659.cif (#44) relative to |
| 66117 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 66118 | | Matrix rotation and translation |
| 66119 | | 0.59143363 0.34566993 0.72850433 227.95503666 |
| 66120 | | -0.13172257 -0.84990236 0.51021089 253.99753634 |
| 66121 | | 0.79552211 -0.39771634 -0.45712830 264.39375573 |
| 66122 | | Axis -0.88322158 -0.06519415 -0.46440215 |
| 66123 | | Axis point 0.00000000 135.21602975 35.96393996 |
| 66124 | | Rotation angle (degrees) 149.07029165 |
| 66125 | | Shift along axis -340.67899136 |
| 66126 | | |
| 66127 | | |
| 66128 | | > fitmap #44 inMap #1 |
| 66129 | | |
| 66130 | | Fit molecule 20240711_copi_golph3_beta_H311-E659.cif (#44) to map |
| 66131 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2488 atoms |
| 66132 | | average map value = 0.01049, steps = 28 |
| 66133 | | shifted from previous position = 0.039 |
| 66134 | | rotated from previous position = 0.00945 degrees |
| 66135 | | atoms outside contour = 854, contour level = 0.0054608 |
| 66136 | | |
| 66137 | | Position of 20240711_copi_golph3_beta_H311-E659.cif (#44) relative to |
| 66138 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 66139 | | Matrix rotation and translation |
| 66140 | | 0.59149766 0.34577423 0.72840284 227.92948108 |
| 66141 | | -0.13166947 -0.84983342 0.51033941 254.02784025 |
| 66142 | | 0.79548329 -0.39777299 -0.45714657 264.39514247 |
| 66143 | | Axis -0.88323725 -0.06524297 -0.46436549 |
| 66144 | | Axis point 0.00000000 135.23245815 35.96762681 |
| 66145 | | Rotation angle (degrees) 149.06389878 |
| 66146 | | Shift along axis -340.66532049 |
| 66147 | | |
| 66148 | | |
| 66149 | | > fitmap #44 inMap #1 |
| 66150 | | |
| 66151 | | Fit molecule 20240711_copi_golph3_beta_H311-E659.cif (#44) to map |
| 66152 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2488 atoms |
| 66153 | | average map value = 0.01049, steps = 40 |
| 66154 | | shifted from previous position = 0.0274 |
| 66155 | | rotated from previous position = 0.041 degrees |
| 66156 | | atoms outside contour = 857, contour level = 0.0054608 |
| 66157 | | |
| 66158 | | Position of 20240711_copi_golph3_beta_H311-E659.cif (#44) relative to |
| 66159 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 66160 | | Matrix rotation and translation |
| 66161 | | 0.59164557 0.34604757 0.72815287 227.92017434 |
| 66162 | | -0.13097253 -0.84993837 0.51034396 253.97764784 |
| 66163 | | 0.79548835 -0.39731077 -0.45753955 264.38682197 |
| 66164 | | Axis -0.88329404 -0.06552825 -0.46421728 |
| 66165 | | Axis point 0.00000000 135.16371112 36.03866076 |
| 66166 | | Rotation angle (degrees) 149.08340997 |
| 66167 | | Shift along axis -340.69617475 |
| 66168 | | |
| 66169 | | |
| 66170 | | > fitmap #45 inMap #1 |
| 66171 | | |
| 66172 | | Fit molecule 20240711_copi_golph3_beta_M1-H311_K660-A710.cif (#45) to map |
| 66173 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2879 atoms |
| 66174 | | average map value = 0.01059, steps = 28 |
| 66175 | | shifted from previous position = 0.0124 |
| 66176 | | rotated from previous position = 0.0648 degrees |
| 66177 | | atoms outside contour = 1088, contour level = 0.0054608 |
| 66178 | | |
| 66179 | | Position of 20240711_copi_golph3_beta_M1-H311_K660-A710.cif (#45) relative to |
| 66180 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 66181 | | Matrix rotation and translation |
| 66182 | | 0.59421777 0.37915482 0.70932846 225.99164989 |
| 66183 | | -0.07052607 -0.85395625 0.51554321 250.98951359 |
| 66184 | | 0.80120616 -0.35637109 -0.48069568 261.45591263 |
| 66185 | | Axis -0.88488945 -0.09324495 -0.45637269 |
| 66186 | | Axis point 0.00000000 129.22523857 39.84864996 |
| 66187 | | Rotation angle (degrees) 150.48387508 |
| 66188 | | Shift along axis -342.70247180 |
| 66189 | | |
| 66190 | | |
| 66191 | | > show #46 models |
| 66192 | | |
| 66193 | | > hide #!1 models |
| 66194 | | |
| 66195 | | > hide #38 models |
| 66196 | | |
| 66197 | | > hide #39 models |
| 66198 | | |
| 66199 | | > hide #41 models |
| 66200 | | |
| 66201 | | > hide #42 models |
| 66202 | | |
| 66203 | | > hide #!43 models |
| 66204 | | |
| 66205 | | > hide #!44 models |
| 66206 | | |
| 66207 | | > hide #!45 models |
| 66208 | | |
| 66209 | | Drag select of 4 residues |
| 66210 | | |
| 66211 | | > delete sel |
| 66212 | | |
| 66213 | | Drag select of 23 residues |
| 66214 | | |
| 66215 | | > delete sel |
| 66216 | | |
| 66217 | | > show #!1 models |
| 66218 | | |
| 66219 | | Drag select of 9 residues |
| 66220 | | |
| 66221 | | > delete sel |
| 66222 | | |
| 66223 | | > hide #!1 models |
| 66224 | | |
| 66225 | | Drag select of 7 residues |
| 66226 | | |
| 66227 | | > delete sel |
| 66228 | | |
| 66229 | | > show #!1 models |
| 66230 | | |
| 66231 | | > hide #!1 models |
| 66232 | | |
| 66233 | | Drag select of 18 residues |
| 66234 | | |
| 66235 | | > delete sel |
| 66236 | | |
| 66237 | | > show #!1 models |
| 66238 | | |
| 66239 | | > show #!45 models |
| 66240 | | |
| 66241 | | > select clear |
| 66242 | | |
| 66243 | | > select #46/G:179 |
| 66244 | | |
| 66245 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 66246 | | |
| 66247 | | > delete sel |
| 66248 | | |
| 66249 | | > select #46/G:178 |
| 66250 | | |
| 66251 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 66252 | | |
| 66253 | | > delete sel |
| 66254 | | |
| 66255 | | > fitmap #46 inMap #1 |
| 66256 | | |
| 66257 | | Fit molecule 20240711_copi_golph3_delta_M1-S273.cif (#46) to map |
| 66258 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1687 atoms |
| 66259 | | average map value = 0.00921, steps = 40 |
| 66260 | | shifted from previous position = 0.0802 |
| 66261 | | rotated from previous position = 0.432 degrees |
| 66262 | | atoms outside contour = 625, contour level = 0.0054608 |
| 66263 | | |
| 66264 | | Position of 20240711_copi_golph3_delta_M1-S273.cif (#46) relative to |
| 66265 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 66266 | | Matrix rotation and translation |
| 66267 | | 0.60555376 0.37694317 0.70086981 225.92253777 |
| 66268 | | -0.05371617 -0.85933682 0.50858116 251.52404936 |
| 66269 | | 0.79398943 -0.34562128 -0.50012670 260.89204460 |
| 66270 | | Axis -0.88873380 -0.09688401 -0.44806887 |
| 66271 | | Axis point 0.00000000 128.95140527 42.03723196 |
| 66272 | | Rotation angle (degrees) 151.27718631 |
| 66273 | | Shift along axis -342.05125874 |
| 66274 | | |
| 66275 | | |
| 66276 | | > fitmap #46 inMap #1 |
| 66277 | | |
| 66278 | | Fit molecule 20240711_copi_golph3_delta_M1-S273.cif (#46) to map |
| 66279 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1687 atoms |
| 66280 | | average map value = 0.00921, steps = 36 |
| 66281 | | shifted from previous position = 0.0026 |
| 66282 | | rotated from previous position = 0.0212 degrees |
| 66283 | | atoms outside contour = 625, contour level = 0.0054608 |
| 66284 | | |
| 66285 | | Position of 20240711_copi_golph3_delta_M1-S273.cif (#46) relative to |
| 66286 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 66287 | | Matrix rotation and translation |
| 66288 | | 0.60557554 0.37667940 0.70099279 225.92943929 |
| 66289 | | -0.05370995 -0.85952398 0.50826545 251.52366578 |
| 66290 | | 0.79397324 -0.34544341 -0.50027527 260.88843027 |
| 66291 | | Axis -0.88875022 -0.09679693 -0.44805513 |
| 66292 | | Axis point 0.00000000 128.95257916 42.05397738 |
| 66293 | | Rotation angle (degrees) 151.29590684 |
| 66294 | | Shift along axis -342.03395646 |
| 66295 | | |
| 66296 | | |
| 66297 | | > fitmap #46 inMap #1 |
| 66298 | | |
| 66299 | | Fit molecule 20240711_copi_golph3_delta_M1-S273.cif (#46) to map |
| 66300 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1687 atoms |
| 66301 | | average map value = 0.00921, steps = 40 |
| 66302 | | shifted from previous position = 0.034 |
| 66303 | | rotated from previous position = 0.0445 degrees |
| 66304 | | atoms outside contour = 621, contour level = 0.0054608 |
| 66305 | | |
| 66306 | | Position of 20240711_copi_golph3_delta_M1-S273.cif (#46) relative to |
| 66307 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 66308 | | Matrix rotation and translation |
| 66309 | | 0.60573039 0.37695519 0.70071070 225.92868374 |
| 66310 | | -0.05399153 -0.85915229 0.50886369 251.48998984 |
| 66311 | | 0.79383601 -0.34606664 -0.50006226 260.88507598 |
| 66312 | | Axis -0.88877335 -0.09681175 -0.44800605 |
| 66313 | | Axis point 0.00000000 128.96117324 42.01611838 |
| 66314 | | Rotation angle (degrees) 151.25182612 |
| 66315 | | Shift along axis -342.02467069 |
| 66316 | | |
| 66317 | | |
| 66318 | | > select #46/G:223 |
| 66319 | | |
| 66320 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 66321 | | |
| 66322 | | > delete sel |
| 66323 | | |
| 66324 | | > fitmap #46 inMap #1 |
| 66325 | | |
| 66326 | | Fit molecule 20240711_copi_golph3_delta_M1-S273.cif (#46) to map |
| 66327 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1681 atoms |
| 66328 | | average map value = 0.009232, steps = 44 |
| 66329 | | shifted from previous position = 0.0363 |
| 66330 | | rotated from previous position = 0.0461 degrees |
| 66331 | | atoms outside contour = 619, contour level = 0.0054608 |
| 66332 | | |
| 66333 | | Position of 20240711_copi_golph3_delta_M1-S273.cif (#46) relative to |
| 66334 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 66335 | | Matrix rotation and translation |
| 66336 | | 0.60565962 0.37737338 0.70054676 225.91375703 |
| 66337 | | -0.05319936 -0.85921597 0.50883961 251.54232654 |
| 66338 | | 0.79394349 -0.34545224 -0.50031639 260.88614007 |
| 66339 | | Axis -0.88876437 -0.09716549 -0.44794728 |
| 66340 | | Axis point 0.00000000 128.92911445 42.06422472 |
| 66341 | | Rotation angle (degrees) 151.27497962 |
| 66342 | | Shift along axis -342.08856667 |
| 66343 | | |
| 66344 | | |
| 66345 | | > fitmap #46 inMap #1 |
| 66346 | | |
| 66347 | | Fit molecule 20240711_copi_golph3_delta_M1-S273.cif (#46) to map |
| 66348 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1681 atoms |
| 66349 | | average map value = 0.009232, steps = 36 |
| 66350 | | shifted from previous position = 0.0019 |
| 66351 | | rotated from previous position = 0.0132 degrees |
| 66352 | | atoms outside contour = 619, contour level = 0.0054608 |
| 66353 | | |
| 66354 | | Position of 20240711_copi_golph3_delta_M1-S273.cif (#46) relative to |
| 66355 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 66356 | | Matrix rotation and translation |
| 66357 | | 0.60565255 0.37723336 0.70062827 225.91751968 |
| 66358 | | -0.05316674 -0.85933407 0.50864355 251.54284148 |
| 66359 | | 0.79395106 -0.34531138 -0.50040160 260.88418454 |
| 66360 | | Axis -0.88876887 -0.09712736 -0.44794661 |
| 66361 | | Axis point 0.00000000 128.92708608 42.07511626 |
| 66362 | | Rotation angle (degrees) 151.28752213 |
| 66363 | | Shift along axis -342.08233740 |
| 66364 | | |
| 66365 | | |
| 66366 | | > hide #!1 models |
| 66367 | | |
| 66368 | | > show #34.7 models |
| 66369 | | |
| 66370 | | > hide #34.7 models |
| 66371 | | |
| 66372 | | > show #47 models |
| 66373 | | |
| 66374 | | > hide #47 models |
| 66375 | | |
| 66376 | | > show #48 models |
| 66377 | | |
| 66378 | | > hide #48 models |
| 66379 | | |
| 66380 | | > show #!49 models |
| 66381 | | |
| 66382 | | > hide #!49 models |
| 66383 | | |
| 66384 | | > show #!1 models |
| 66385 | | |
| 66386 | | > hide #!1 models |
| 66387 | | |
| 66388 | | > show #!44 models |
| 66389 | | |
| 66390 | | > show #!43 models |
| 66391 | | |
| 66392 | | > show #38 models |
| 66393 | | |
| 66394 | | > show #39 models |
| 66395 | | |
| 66396 | | > show #41 models |
| 66397 | | |
| 66398 | | > show #42 models |
| 66399 | | |
| 66400 | | > show #47 models |
| 66401 | | |
| 66402 | | > show #48 models |
| 66403 | | |
| 66404 | | > show #!49 models |
| 66405 | | |
| 66406 | | > show #50 models |
| 66407 | | |
| 66408 | | > show #51 models |
| 66409 | | |
| 66410 | | > show #52 models |
| 66411 | | |
| 66412 | | > show #53 models |
| 66413 | | |
| 66414 | | > show #!54 models |
| 66415 | | |
| 66416 | | > show #55 models |
| 66417 | | |
| 66418 | | > show #!1 models |
| 66419 | | |
| 66420 | | > hide #!1 models |
| 66421 | | |
| 66422 | | > hide #55 models |
| 66423 | | |
| 66424 | | > hide #!54 models |
| 66425 | | |
| 66426 | | > hide #53 models |
| 66427 | | |
| 66428 | | > hide #52 models |
| 66429 | | |
| 66430 | | > hide #51 models |
| 66431 | | |
| 66432 | | > hide #50 models |
| 66433 | | |
| 66434 | | > hide #!46 models |
| 66435 | | |
| 66436 | | > hide #!45 models |
| 66437 | | |
| 66438 | | > hide #!44 models |
| 66439 | | |
| 66440 | | > hide #!43 models |
| 66441 | | |
| 66442 | | > hide #42 models |
| 66443 | | |
| 66444 | | > hide #41 models |
| 66445 | | |
| 66446 | | Drag select of 12 residues |
| 66447 | | |
| 66448 | | > delete sel |
| 66449 | | |
| 66450 | | Drag select of 6 residues |
| 66451 | | |
| 66452 | | > delete sel |
| 66453 | | |
| 66454 | | Drag select of 8 residues |
| 66455 | | |
| 66456 | | > delete sel |
| 66457 | | |
| 66458 | | > select #49/H:583 |
| 66459 | | |
| 66460 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 66461 | | |
| 66462 | | > delete sel |
| 66463 | | |
| 66464 | | > show #41 models |
| 66465 | | |
| 66466 | | > show #42 models |
| 66467 | | |
| 66468 | | > show #!43 models |
| 66469 | | |
| 66470 | | > show #!44 models |
| 66471 | | |
| 66472 | | > show #!45 models |
| 66473 | | |
| 66474 | | > show #!46 models |
| 66475 | | |
| 66476 | | > show #50 models |
| 66477 | | |
| 66478 | | > show #51 models |
| 66479 | | |
| 66480 | | > show #52 models |
| 66481 | | |
| 66482 | | > show #53 models |
| 66483 | | |
| 66484 | | > show #!54 models |
| 66485 | | |
| 66486 | | > show #55 models |
| 66487 | | |
| 66488 | | > show #!1 models |
| 66489 | | |
| 66490 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 66491 | | > dataset/Chimera sessions/20240805_leaf_fitting_AF3_final.cxs" |
| 66492 | | |
| 66493 | | > fitmap #38 inMap #1 |
| 66494 | | |
| 66495 | | Fit molecule 20240711_copi_golph3_alpha_M1-T591.cif (#38) to map |
| 66496 | | relion_locres_filtered_20240326_GT.mrc (#1) using 4763 atoms |
| 66497 | | average map value = 0.008699, steps = 44 |
| 66498 | | shifted from previous position = 0.0236 |
| 66499 | | rotated from previous position = 0.0107 degrees |
| 66500 | | atoms outside contour = 1689, contour level = 0.0054608 |
| 66501 | | |
| 66502 | | Position of 20240711_copi_golph3_alpha_M1-T591.cif (#38) relative to |
| 66503 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 66504 | | Matrix rotation and translation |
| 66505 | | 0.57928803 0.37610754 0.72316561 229.39213966 |
| 66506 | | -0.04023911 -0.87290929 0.48622030 258.29778260 |
| 66507 | | 0.81412910 -0.31076114 -0.49053167 263.87493687 |
| 66508 | | Axis -0.88184203 -0.10064906 -0.46067820 |
| 66509 | | Axis point 0.00000000 129.96633324 41.81045087 |
| 66510 | | Rotation angle (degrees) 153.13534603 |
| 66511 | | Shift along axis -349.84648868 |
| 66512 | | |
| 66513 | | |
| 66514 | | > fitmap #39 inMap #1 |
| 66515 | | |
| 66516 | | Fit molecule 20240711_copi_golph3_alpha_I592-G900.cif (#39) to map |
| 66517 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1856 atoms |
| 66518 | | average map value = 0.009052, steps = 28 |
| 66519 | | shifted from previous position = 0.0199 |
| 66520 | | rotated from previous position = 0.0556 degrees |
| 66521 | | atoms outside contour = 735, contour level = 0.0054608 |
| 66522 | | |
| 66523 | | Position of 20240711_copi_golph3_alpha_I592-G900.cif (#39) relative to |
| 66524 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 66525 | | Matrix rotation and translation |
| 66526 | | 0.60219289 0.30452316 0.73799009 225.08404402 |
| 66527 | | -0.13785076 -0.87084661 0.47182979 254.13974261 |
| 66528 | | 0.78635926 -0.38586504 -0.48243889 263.52424373 |
| 66529 | | Axis -0.88763619 -0.05005770 -0.45781680 |
| 66530 | | Axis point 0.00000000 136.82920972 39.25982451 |
| 66531 | | Rotation angle (degrees) 151.10969654 |
| 66532 | | Shift along axis -333.16021952 |
| 66533 | | |
| 66534 | | |
| 66535 | | > fitmap #41 inMap #1 |
| 66536 | | |
| 66537 | | Fit molecule 20240711_copi_golph3_betaprime_M1-S586.cif (#41) to map |
| 66538 | | relion_locres_filtered_20240326_GT.mrc (#1) using 4686 atoms |
| 66539 | | average map value = 0.01004, steps = 40 |
| 66540 | | shifted from previous position = 0.0209 |
| 66541 | | rotated from previous position = 0.0155 degrees |
| 66542 | | atoms outside contour = 1306, contour level = 0.0054608 |
| 66543 | | |
| 66544 | | Position of 20240711_copi_golph3_betaprime_M1-S586.cif (#41) relative to |
| 66545 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 66546 | | Matrix rotation and translation |
| 66547 | | 0.59295682 0.33298464 0.73315990 230.47565312 |
| 66548 | | -0.03646127 -0.89845596 0.43754710 249.47671776 |
| 66549 | | 0.80440835 -0.28617848 -0.52060454 258.88405677 |
| 66550 | | Axis -0.88725890 -0.08734777 -0.45292605 |
| 66551 | | Axis point 0.00000000 125.80239586 44.24867975 |
| 66552 | | Rotation angle (degrees) 155.93056047 |
| 66553 | | Shift along axis -343.53814387 |
| 66554 | | |
| 66555 | | |
| 66556 | | > fitmap #42 inMap #1 |
| 66557 | | |
| 66558 | | Fit molecule 20240711_copi_golph3_betaprime_L587-D905.cif (#42) to map |
| 66559 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2009 atoms |
| 66560 | | average map value = 0.009612, steps = 40 |
| 66561 | | shifted from previous position = 0.0365 |
| 66562 | | rotated from previous position = 0.0376 degrees |
| 66563 | | atoms outside contour = 806, contour level = 0.0054608 |
| 66564 | | |
| 66565 | | Position of 20240711_copi_golph3_betaprime_L587-D905.cif (#42) relative to |
| 66566 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 66567 | | Matrix rotation and translation |
| 66568 | | 0.59391500 0.33716394 0.73046934 226.60180837 |
| 66569 | | -0.11776757 -0.86173358 0.49350384 254.76376583 |
| 66570 | | 0.79586165 -0.37912493 -0.47208952 265.08713080 |
| 66571 | | Axis -0.88478071 -0.06630295 -0.46126674 |
| 66572 | | Axis point 0.00000000 135.04800086 38.86518440 |
| 66573 | | Rotation angle (degrees) 150.45330024 |
| 66574 | | Shift along axis -339.66037675 |
| 66575 | | |
| 66576 | | |
| 66577 | | > fitmap #43 inMap #1 |
| 66578 | | |
| 66579 | | Fit molecule 20240711_copi_golph3_beta_S711-L953.cif (#43) to map |
| 66580 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1872 atoms |
| 66581 | | average map value = 0.008979, steps = 48 |
| 66582 | | shifted from previous position = 0.00928 |
| 66583 | | rotated from previous position = 0.058 degrees |
| 66584 | | atoms outside contour = 595, contour level = 0.0054608 |
| 66585 | | |
| 66586 | | Position of 20240711_copi_golph3_beta_S711-L953.cif (#43) relative to |
| 66587 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 66588 | | Matrix rotation and translation |
| 66589 | | 0.55318541 0.42731135 0.71511601 229.23248395 |
| 66590 | | -0.07089264 -0.83116159 0.55149311 257.71582932 |
| 66591 | | 0.83003622 -0.35577440 -0.42949324 265.07353083 |
| 66592 | | Axis -0.87118608 -0.11034991 -0.47839074 |
| 66593 | | Axis point 0.00000000 129.69852811 34.36494916 |
| 66594 | | Rotation angle (degrees) 148.62023071 |
| 66595 | | Shift along axis -354.95179266 |
| 66596 | | |
| 66597 | | |
| 66598 | | > fitmap #44 inMap #1 |
| 66599 | | |
| 66600 | | Fit molecule 20240711_copi_golph3_beta_H311-E659.cif (#44) to map |
| 66601 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2488 atoms |
| 66602 | | average map value = 0.01049, steps = 44 |
| 66603 | | shifted from previous position = 0.00269 |
| 66604 | | rotated from previous position = 0.0158 degrees |
| 66605 | | atoms outside contour = 858, contour level = 0.0054608 |
| 66606 | | |
| 66607 | | Position of 20240711_copi_golph3_beta_H311-E659.cif (#44) relative to |
| 66608 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 66609 | | Matrix rotation and translation |
| 66610 | | 0.59165406 0.34602484 0.72815677 227.91923540 |
| 66611 | | -0.13120248 -0.84983644 0.51045464 253.98345606 |
| 66612 | | 0.79544414 -0.39754854 -0.45740986 264.38893676 |
| 66613 | | Axis -0.88328859 -0.06545590 -0.46423786 |
| 66614 | | Axis point 0.00000000 135.18382181 36.01531658 |
| 66615 | | Rotation angle (degrees) 149.07002452 |
| 66616 | | Shift along axis -340.68253036 |
| 66617 | | |
| 66618 | | |
| 66619 | | > fitmap #45 inMap #1 |
| 66620 | | |
| 66621 | | Fit molecule 20240711_copi_golph3_beta_M1-H311_K660-A710.cif (#45) to map |
| 66622 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2879 atoms |
| 66623 | | average map value = 0.01059, steps = 28 |
| 66624 | | shifted from previous position = 0.013 |
| 66625 | | rotated from previous position = 0.0445 degrees |
| 66626 | | atoms outside contour = 1087, contour level = 0.0054608 |
| 66627 | | |
| 66628 | | Position of 20240711_copi_golph3_beta_M1-H311_K660-A710.cif (#45) relative to |
| 66629 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 66630 | | Matrix rotation and translation |
| 66631 | | 0.59382688 0.37913834 0.70966454 225.99540182 |
| 66632 | | -0.07111890 -0.85383085 0.51566945 250.98421627 |
| 66633 | | 0.80144354 -0.35668894 -0.48006380 261.49180825 |
| 66634 | | Axis -0.88475932 -0.09308367 -0.45665783 |
| 66635 | | Axis point 0.00000000 129.24450465 39.78412987 |
| 66636 | | Rotation angle (degrees) 150.46257765 |
| 66637 | | Shift along axis -342.72635212 |
| 66638 | | |
| 66639 | | |
| 66640 | | > fitmap #46 inMap #1 |
| 66641 | | |
| 66642 | | Fit molecule 20240711_copi_golph3_delta_M1-S273.cif (#46) to map |
| 66643 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1681 atoms |
| 66644 | | average map value = 0.009232, steps = 36 |
| 66645 | | shifted from previous position = 0.00229 |
| 66646 | | rotated from previous position = 0.00138 degrees |
| 66647 | | atoms outside contour = 619, contour level = 0.0054608 |
| 66648 | | |
| 66649 | | Position of 20240711_copi_golph3_delta_M1-S273.cif (#46) relative to |
| 66650 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 66651 | | Matrix rotation and translation |
| 66652 | | 0.60565582 0.37721154 0.70063719 225.91936681 |
| 66653 | | -0.05317775 -0.85934408 0.50862547 251.54408309 |
| 66654 | | 0.79394783 -0.34531029 -0.50040748 260.88506982 |
| 66655 | | Axis -0.88877025 -0.09711704 -0.44794611 |
| 66656 | | Axis point 0.00000000 128.92865681 42.07546274 |
| 66657 | | Rotation angle (degrees) 151.28827510 |
| 66658 | | Shift along axis -342.08208254 |
| 66659 | | |
| 66660 | | |
| 66661 | | > fitmap #47 inMap #1 |
| 66662 | | |
| 66663 | | Fit molecule 20240711_copi_golph3_gamma1_K300-F448.cif (#47) to map |
| 66664 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1163 atoms |
| 66665 | | average map value = 0.01156, steps = 28 |
| 66666 | | shifted from previous position = 0.0359 |
| 66667 | | rotated from previous position = 0.0812 degrees |
| 66668 | | atoms outside contour = 406, contour level = 0.0054608 |
| 66669 | | |
| 66670 | | Position of 20240711_copi_golph3_gamma1_K300-F448.cif (#47) relative to |
| 66671 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 66672 | | Matrix rotation and translation |
| 66673 | | 0.63735883 0.40216824 0.65729326 230.92053426 |
| 66674 | | -0.14074376 -0.77789273 0.61243292 258.40212385 |
| 66675 | | 0.75760472 -0.48284946 -0.43919413 263.51538032 |
| 66676 | | Axis -0.89296796 -0.08178249 -0.44262834 |
| 66677 | | Axis point 0.00000000 139.97276575 30.34735340 |
| 66678 | | Rotation angle (degrees) 142.17280564 |
| 66679 | | Shift along axis -343.97678385 |
| 66680 | | |
| 66681 | | |
| 66682 | | > fitmap #48 inMap #1 |
| 66683 | | |
| 66684 | | Fit molecule 20240711_copi_golph3_gamma1_M1-P299.cif (#48) to map |
| 66685 | | relion_locres_filtered_20240326_GT.mrc (#1) using 2333 atoms |
| 66686 | | average map value = 0.0114, steps = 40 |
| 66687 | | shifted from previous position = 0.0337 |
| 66688 | | rotated from previous position = 0.107 degrees |
| 66689 | | atoms outside contour = 861, contour level = 0.0054608 |
| 66690 | | |
| 66691 | | Position of 20240711_copi_golph3_gamma1_M1-P299.cif (#48) relative to |
| 66692 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 66693 | | Matrix rotation and translation |
| 66694 | | 0.71018130 0.58934449 0.38511764 247.34816708 |
| 66695 | | 0.22353933 -0.70748588 0.67044306 250.99527366 |
| 66696 | | 0.66758722 -0.39004718 -0.63418491 271.51829102 |
| 66697 | | Axis -0.91672557 -0.24417677 -0.31621502 |
| 66698 | | Axis point 0.00000000 119.18898752 65.35215486 |
| 66699 | | Rotation angle (degrees) 144.66106725 |
| 66700 | | Shift along axis -373.89576549 |
| 66701 | | |
| 66702 | | |
| 66703 | | > fitmap #49 inMap #1 |
| 66704 | | |
| 66705 | | Fit molecule 20240711_copi_golph3_gammm1_T449-R609.cif (#49) to map |
| 66706 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1064 atoms |
| 66707 | | average map value = 0.01126, steps = 48 |
| 66708 | | shifted from previous position = 0.0682 |
| 66709 | | rotated from previous position = 0.523 degrees |
| 66710 | | atoms outside contour = 327, contour level = 0.0054608 |
| 66711 | | |
| 66712 | | Position of 20240711_copi_golph3_gammm1_T449-R609.cif (#49) relative to |
| 66713 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 66714 | | Matrix rotation and translation |
| 66715 | | 0.61465895 0.32811241 0.71731208 227.85211531 |
| 66716 | | -0.19740465 -0.81645485 0.54261669 259.14664332 |
| 66717 | | 0.76369220 -0.47512495 -0.43707037 264.40938172 |
| 66718 | | Axis -0.88781089 -0.04045897 -0.45842654 |
| 66719 | | Axis point 0.00000000 144.12846306 29.79812316 |
| 66720 | | Rotation angle (degrees) 145.02808860 |
| 66721 | | Shift along axis -333.98667268 |
| 66722 | | |
| 66723 | | |
| 66724 | | > fitmap #49 inMap #1 |
| 66725 | | |
| 66726 | | Fit molecule 20240711_copi_golph3_gammm1_T449-R609.cif (#49) to map |
| 66727 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1064 atoms |
| 66728 | | average map value = 0.01126, steps = 44 |
| 66729 | | shifted from previous position = 0.0321 |
| 66730 | | rotated from previous position = 0.0462 degrees |
| 66731 | | atoms outside contour = 324, contour level = 0.0054608 |
| 66732 | | |
| 66733 | | Position of 20240711_copi_golph3_gammm1_T449-R609.cif (#49) relative to |
| 66734 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 66735 | | Matrix rotation and translation |
| 66736 | | 0.61502244 0.32743635 0.71730944 227.85342077 |
| 66737 | | -0.19788856 -0.81649374 0.54238187 259.17556224 |
| 66738 | | 0.76327421 -0.47552436 -0.43736606 264.41457129 |
| 66739 | | Axis -0.88792245 -0.04009519 -0.45824240 |
| 66740 | | Axis point 0.00000000 144.20961212 29.80746923 |
| 66741 | | Rotation angle (degrees) 145.02664345 |
| 66742 | | Shift along axis -333.87382959 |
| 66743 | | |
| 66744 | | |
| 66745 | | > fitmap #50 inMap #1 |
| 66746 | | |
| 66747 | | Fit molecule 20240711_copi_golph3_zeta1.cif (#50) to map |
| 66748 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1200 atoms |
| 66749 | | average map value = 0.01052, steps = 56 |
| 66750 | | shifted from previous position = 0.0555 |
| 66751 | | rotated from previous position = 0.263 degrees |
| 66752 | | atoms outside contour = 378, contour level = 0.0054608 |
| 66753 | | |
| 66754 | | Position of 20240711_copi_golph3_zeta1.cif (#50) relative to |
| 66755 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 66756 | | Matrix rotation and translation |
| 66757 | | 0.73251414 0.58212836 0.35291585 247.54139535 |
| 66758 | | 0.25167844 -0.71327099 0.65414252 251.74744250 |
| 66759 | | 0.63251956 -0.39034733 -0.66899025 274.75204630 |
| 66760 | | Axis -0.92380856 -0.24729804 -0.29226944 |
| 66761 | | Axis point 0.00000000 120.61570766 71.40135804 |
| 66762 | | Rotation angle (degrees) 145.57567415 |
| 66763 | | Shift along axis -371.23913687 |
| 66764 | | |
| 66765 | | |
| 66766 | | > fitmap #51 inMap #1 |
| 66767 | | |
| 66768 | | Fit molecule 20240711_copi_golph3_beta_Arf1_.cif (#51) to map |
| 66769 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1350 atoms |
| 66770 | | average map value = 0.007965, steps = 44 |
| 66771 | | shifted from previous position = 0.0233 |
| 66772 | | rotated from previous position = 0.0494 degrees |
| 66773 | | atoms outside contour = 559, contour level = 0.0054608 |
| 66774 | | |
| 66775 | | Position of 20240711_copi_golph3_beta_Arf1_.cif (#51) relative to |
| 66776 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 66777 | | Matrix rotation and translation |
| 66778 | | 0.62732550 0.37583357 0.68206440 225.38688247 |
| 66779 | | -0.03751618 -0.86023530 0.50851526 253.05396861 |
| 66780 | | 0.77785298 -0.34459304 -0.52554770 258.39723144 |
| 66781 | | Axis -0.89537005 -0.10053381 -0.43382649 |
| 66782 | | Axis point 0.00000000 129.61295180 43.60190483 |
| 66783 | | Rotation angle (degrees) 151.54946723 |
| 66784 | | Shift along axis -339.34470784 |
| 66785 | | |
| 66786 | | |
| 66787 | | > fitmap #50 inMap #1 |
| 66788 | | |
| 66789 | | Fit molecule 20240711_copi_golph3_zeta1.cif (#50) to map |
| 66790 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1200 atoms |
| 66791 | | average map value = 0.01052, steps = 40 |
| 66792 | | shifted from previous position = 0.00431 |
| 66793 | | rotated from previous position = 0.0156 degrees |
| 66794 | | atoms outside contour = 378, contour level = 0.0054608 |
| 66795 | | |
| 66796 | | Position of 20240711_copi_golph3_zeta1.cif (#50) relative to |
| 66797 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 66798 | | Matrix rotation and translation |
| 66799 | | 0.73264141 0.58211201 0.35267856 247.55303951 |
| 66800 | | 0.25173348 -0.71318961 0.65421007 251.74165773 |
| 66801 | | 0.63235023 -0.39052039 -0.66904932 274.76063038 |
| 66802 | | Axis -0.92384305 -0.24731042 -0.29214991 |
| 66803 | | Axis point 0.00000000 120.62565732 71.41736433 |
| 66804 | | Rotation angle (degrees) 145.56809476 |
| 66805 | | Shift along axis -371.22978396 |
| 66806 | | |
| 66807 | | |
| 66808 | | > fitmap #51 inMap #1 |
| 66809 | | |
| 66810 | | Fit molecule 20240711_copi_golph3_beta_Arf1_.cif (#51) to map |
| 66811 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1350 atoms |
| 66812 | | average map value = 0.007965, steps = 40 |
| 66813 | | shifted from previous position = 0.0158 |
| 66814 | | rotated from previous position = 0.0445 degrees |
| 66815 | | atoms outside contour = 559, contour level = 0.0054608 |
| 66816 | | |
| 66817 | | Position of 20240711_copi_golph3_beta_Arf1_.cif (#51) relative to |
| 66818 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 66819 | | Matrix rotation and translation |
| 66820 | | 0.62717948 0.37536024 0.68245922 225.37524868 |
| 66821 | | -0.03825161 -0.86031031 0.50833354 253.00868258 |
| 66822 | | 0.77793490 -0.34492153 -0.52521084 258.41418396 |
| 66823 | | Axis -0.89532324 -0.10018293 -0.43400422 |
| 66824 | | Axis point 0.00000000 129.63691056 43.56713286 |
| 66825 | | Rotation angle (degrees) 151.54250251 |
| 66826 | | Shift along axis -339.28369878 |
| 66827 | | |
| 66828 | | |
| 66829 | | > fitmap #52 inMap #1 |
| 66830 | | |
| 66831 | | Fit molecule 20240711_copi_golph3_gamma_Arf1_.cif (#52) to map |
| 66832 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1350 atoms |
| 66833 | | average map value = 0.01044, steps = 84 |
| 66834 | | shifted from previous position = 0.032 |
| 66835 | | rotated from previous position = 0.0719 degrees |
| 66836 | | atoms outside contour = 392, contour level = 0.0054608 |
| 66837 | | |
| 66838 | | Position of 20240711_copi_golph3_gamma_Arf1_.cif (#52) relative to |
| 66839 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 66840 | | Matrix rotation and translation |
| 66841 | | -0.55783285 0.36551831 -0.74513010 335.04867435 |
| 66842 | | 0.54045417 0.84133441 0.00810603 166.90739297 |
| 66843 | | 0.62986650 -0.39818686 -0.66686987 272.93165463 |
| 66844 | | Axis -0.28128830 -0.95194984 0.12111314 |
| 66845 | | Axis point 75.68867820 0.00000000 208.33038989 |
| 66846 | | Rotation angle (degrees) 133.76357273 |
| 66847 | | Shift along axis -220.07712654 |
| 66848 | | |
| 66849 | | |
| 66850 | | > fitmap #53 inMap #1 |
| 66851 | | |
| 66852 | | Fit molecule 20240711_copi_golph3_third_Arf1.cif (#53) to map |
| 66853 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1350 atoms |
| 66854 | | average map value = 0.006839, steps = 48 |
| 66855 | | shifted from previous position = 0.00299 |
| 66856 | | rotated from previous position = 0.0179 degrees |
| 66857 | | atoms outside contour = 557, contour level = 0.0054608 |
| 66858 | | |
| 66859 | | Position of 20240711_copi_golph3_third_Arf1.cif (#53) relative to |
| 66860 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 66861 | | Matrix rotation and translation |
| 66862 | | 0.73571856 0.66852635 0.10858508 227.55132607 |
| 66863 | | 0.67433984 -0.70810015 -0.20942768 323.63250252 |
| 66864 | | -0.06311881 0.22730308 -0.97177638 187.14042400 |
| 66865 | | Axis 0.93058498 0.36586629 0.01238737 |
| 66866 | | Axis point 0.00000000 105.38358680 104.96924755 |
| 66867 | | Rotation angle (degrees) 166.42877878 |
| 66868 | | Shift along axis 332.48024794 |
| 66869 | | |
| 66870 | | |
| 66871 | | > fitmap #55 inMap #1 |
| 66872 | | |
| 66873 | | Fit molecule 20240711_copi_golph3_golph3_.cif (#55) to map |
| 66874 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1971 atoms |
| 66875 | | average map value = 0.008363, steps = 44 |
| 66876 | | shifted from previous position = 0.0108 |
| 66877 | | rotated from previous position = 0.00908 degrees |
| 66878 | | atoms outside contour = 616, contour level = 0.0054608 |
| 66879 | | |
| 66880 | | Position of 20240711_copi_golph3_golph3_.cif (#55) relative to |
| 66881 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 66882 | | Matrix rotation and translation |
| 66883 | | 0.52175848 0.47050138 0.71161545 230.53217799 |
| 66884 | | 0.01176338 -0.83804772 0.54547012 257.45975389 |
| 66885 | | 0.85301214 -0.27623265 -0.44279319 262.85417733 |
| 66886 | | Axis -0.86345476 -0.14858128 -0.48204718 |
| 66887 | | Axis point 0.00000000 121.70495834 37.26275203 |
| 66888 | | Rotation angle (degrees) 151.58706973 |
| 66889 | | Shift along axis -364.01592063 |
| 66890 | | |
| 66891 | | |
| 66892 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 66893 | | > dataset/Chimera sessions/20240805_leaf_fitting_AF3_final.cxs" |
| 66894 | | |
| 66895 | | > hide #!43 models |
| 66896 | | |
| 66897 | | > show #!43 models |
| 66898 | | |
| 66899 | | > hide #!43 models |
| 66900 | | |
| 66901 | | > show #!43 models |
| 66902 | | |
| 66903 | | > hide #!43 models |
| 66904 | | |
| 66905 | | > show #!43 models |
| 66906 | | |
| 66907 | | > show #!26.2 models |
| 66908 | | |
| 66909 | | > hide #!26.2 models |
| 66910 | | |
| 66911 | | > show #!29 models |
| 66912 | | |
| 66913 | | > hide #!29 models |
| 66914 | | |
| 66915 | | > show #!21 models |
| 66916 | | |
| 66917 | | > hide #!21 models |
| 66918 | | |
| 66919 | | > show #!20 models |
| 66920 | | |
| 66921 | | > hide #!20 models |
| 66922 | | |
| 66923 | | > show #!19 models |
| 66924 | | |
| 66925 | | > show #!18 models |
| 66926 | | |
| 66927 | | > hide #!19 models |
| 66928 | | |
| 66929 | | > hide #!18 models |
| 66930 | | |
| 66931 | | > show #!13 models |
| 66932 | | |
| 66933 | | > hide #!1 models |
| 66934 | | |
| 66935 | | > show #!1 models |
| 66936 | | |
| 66937 | | > hide #!1 models |
| 66938 | | |
| 66939 | | > hide #41 models |
| 66940 | | |
| 66941 | | > hide #42 models |
| 66942 | | |
| 66943 | | > hide #47 models |
| 66944 | | |
| 66945 | | > show #47 models |
| 66946 | | |
| 66947 | | > hide #!54 models |
| 66948 | | |
| 66949 | | > hide #55 models |
| 66950 | | |
| 66951 | | > hide #38 models |
| 66952 | | |
| 66953 | | > hide #39 models |
| 66954 | | |
| 66955 | | > hide #53 models |
| 66956 | | |
| 66957 | | > show #53 models |
| 66958 | | |
| 66959 | | > hide #52 models |
| 66960 | | |
| 66961 | | > show #52 models |
| 66962 | | |
| 66963 | | > hide #52 models |
| 66964 | | |
| 66965 | | > show #52 models |
| 66966 | | |
| 66967 | | > hide #51 models |
| 66968 | | |
| 66969 | | > hide #!13 models |
| 66970 | | |
| 66971 | | > hide #!43 models |
| 66972 | | |
| 66973 | | > show #!1 models |
| 66974 | | |
| 66975 | | > hide #!1 models |
| 66976 | | |
| 66977 | | > show #!1 models |
| 66978 | | |
| 66979 | | > show #38 models |
| 66980 | | |
| 66981 | | > show #39 models |
| 66982 | | |
| 66983 | | > show #41 models |
| 66984 | | |
| 66985 | | > show #42 models |
| 66986 | | |
| 66987 | | > show #!43 models |
| 66988 | | |
| 66989 | | > show #51 models |
| 66990 | | |
| 66991 | | > show #!54 models |
| 66992 | | |
| 66993 | | > show #55 models |
| 66994 | | |
| 66995 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 66996 | | > dataset/Chimera sessions/20240805_leaf_fitting_AF3_final.cxs" |
| 66997 | | |
| 66998 | | [Repeated 1 time(s)] |
| 66999 | | |
| 67000 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and |
| 67001 | | > resources/Processing/Reference structures/emd_3720_2017_leaf.map" |
| 67002 | | |
| 67003 | | Opened emd_3720_2017_leaf.map as #56, grid size 128,128,128, pixel 1.78, shown |
| 67004 | | at level 0.226, step 1, values float32 |
| 67005 | | |
| 67006 | | > color #56 #ebebebff models |
| 67007 | | |
| 67008 | | > select add #56 |
| 67009 | | |
| 67010 | | 2 models selected |
| 67011 | | |
| 67012 | | > volume #56 level 0.1086 |
| 67013 | | |
| 67014 | | > ui mousemode right "translate selected models" |
| 67015 | | |
| 67016 | | > view matrix models #56,1,0,0,51.457,0,1,0,21.433,0,0,1,260.83 |
| 67017 | | |
| 67018 | | > view matrix models #56,1,0,0,189.96,0,1,0,166,0,0,1,244.2 |
| 67019 | | |
| 67020 | | > view matrix models #56,1,0,0,216.08,0,1,0,189.21,0,0,1,215.66 |
| 67021 | | |
| 67022 | | > ui mousemode right "rotate selected models" |
| 67023 | | |
| 67024 | | > view matrix models |
| 67025 | | > #56,-0.87728,0.47929,0.025732,368.35,-0.21391,-0.43841,0.87295,282.24,0.42968,0.76032,0.48713,136.71 |
| 67026 | | |
| 67027 | | > fitmap #56 inMap #1 |
| 67028 | | |
| 67029 | | Fit map emd_3720_2017_leaf.map in map relion_locres_filtered_20240326_GT.mrc |
| 67030 | | using 99958 points |
| 67031 | | correlation = 0.5332, correlation about mean = 0.05426, overlap = 74.42 |
| 67032 | | steps = 144, shift = 15.2, angle = 12.9 degrees |
| 67033 | | |
| 67034 | | Position of emd_3720_2017_leaf.map (#56) relative to |
| 67035 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 67036 | | Matrix rotation and translation |
| 67037 | | -0.90915636 0.40926168 0.07706874 310.78139643 |
| 67038 | | -0.21592730 -0.62148653 0.75308027 244.94933932 |
| 67039 | | 0.35610408 0.66802647 0.65339920 44.26322602 |
| 67040 | | Axis -0.12328500 -0.40446016 -0.90620792 |
| 67041 | | Axis point 169.37967541 84.23413949 0.00000000 |
| 67042 | | Rotation angle (degrees) 159.82138625 |
| 67043 | | Shift along axis -177.49862073 |
| 67044 | | |
| 67045 | | |
| 67046 | | > ui mousemode right "rotate selected models" |
| 67047 | | |
| 67048 | | > view matrix models |
| 67049 | | > #56,0.028586,0.99946,0.016018,204.25,-0.69926,0.0085431,0.71482,305.01,0.7143,-0.031634,0.69912,158.33 |
| 67050 | | |
| 67051 | | > fitmap #56 inMap #1 |
| 67052 | | |
| 67053 | | Fit map emd_3720_2017_leaf.map in map relion_locres_filtered_20240326_GT.mrc |
| 67054 | | using 99958 points |
| 67055 | | correlation = 0.5732, correlation about mean = 0.05181, overlap = 74.18 |
| 67056 | | steps = 216, shift = 16.7, angle = 26.2 degrees |
| 67057 | | |
| 67058 | | Position of emd_3720_2017_leaf.map (#56) relative to |
| 67059 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 67060 | | Matrix rotation and translation |
| 67061 | | 0.14815005 0.98893922 -0.00712591 129.99058546 |
| 67062 | | -0.92169370 0.14068110 0.36151011 287.97813152 |
| 67063 | | 0.35851401 -0.04698983 0.93234096 80.90258523 |
| 67064 | | Axis -0.20551046 -0.18394820 -0.96121200 |
| 67065 | | Axis point 206.90335990 79.49737141 0.00000000 |
| 67066 | | Rotation angle (degrees) 83.65090012 |
| 67067 | | Shift along axis -157.45201883 |
| 67068 | | |
| 67069 | | |
| 67070 | | > view matrix models |
| 67071 | | > #56,0.81181,0.50827,0.28746,140.28,-0.55069,0.50271,0.66635,242.95,0.19417,-0.69925,0.688,282.81 |
| 67072 | | |
| 67073 | | > fitmap #56 inMap #1 |
| 67074 | | |
| 67075 | | Fit map emd_3720_2017_leaf.map in map relion_locres_filtered_20240326_GT.mrc |
| 67076 | | using 99958 points |
| 67077 | | correlation = 0.5782, correlation about mean = 0.05654, overlap = 72.54 |
| 67078 | | steps = 184, shift = 11.1, angle = 13.7 degrees |
| 67079 | | |
| 67080 | | Position of emd_3720_2017_leaf.map (#56) relative to |
| 67081 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 67082 | | Matrix rotation and translation |
| 67083 | | 0.79081078 0.58143750 0.19117727 89.38509923 |
| 67084 | | -0.58500230 0.62618736 0.51542379 168.56102034 |
| 67085 | | 0.17997393 -0.51944183 0.83533799 176.11718788 |
| 67086 | | Axis -0.66364076 0.00718450 -0.74801693 |
| 67087 | | Axis point 203.46435974 136.15873957 0.00000000 |
| 67088 | | Rotation angle (degrees) 51.23202796 |
| 67089 | | Shift along axis -189.84720692 |
| 67090 | | |
| 67091 | | |
| 67092 | | > view matrix models |
| 67093 | | > #56,-0.83504,0.54577,0.069577,354.99,-0.34302,-0.61532,0.70973,342.82,0.43016,0.56879,0.70103,110.03 |
| 67094 | | |
| 67095 | | > fitmap #56 inMap #1 |
| 67096 | | |
| 67097 | | Fit map emd_3720_2017_leaf.map in map relion_locres_filtered_20240326_GT.mrc |
| 67098 | | using 99958 points |
| 67099 | | correlation = 0.5284, correlation about mean = 0.07061, overlap = 73.11 |
| 67100 | | steps = 124, shift = 3.19, angle = 3.81 degrees |
| 67101 | | |
| 67102 | | Position of emd_3720_2017_leaf.map (#56) relative to |
| 67103 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 67104 | | Matrix rotation and translation |
| 67105 | | -0.87267930 0.47932627 0.09315128 299.02701674 |
| 67106 | | -0.27622892 -0.64192017 0.71528740 259.36655497 |
| 67107 | | 0.40265173 0.59848543 0.69259423 35.62977534 |
| 67108 | | Axis -0.14161228 -0.37524252 -0.91604531 |
| 67109 | | Axis point 169.69435247 90.03733869 0.00000000 |
| 67110 | | Rotation angle (degrees) 155.64427649 |
| 67111 | | Shift along axis -172.30974707 |
| 67112 | | |
| 67113 | | |
| 67114 | | > view matrix models |
| 67115 | | > #56,-0.31115,0.95004,0.024789,250.19,-0.80196,-0.27647,0.52955,373.37,0.50994,0.14489,0.84792,135.75 |
| 67116 | | |
| 67117 | | > ui mousemode right "translate selected models" |
| 67118 | | |
| 67119 | | > view matrix models |
| 67120 | | > #56,-0.31115,0.95004,0.024789,225.77,-0.80196,-0.27647,0.52955,368.63,0.50994,0.14489,0.84792,152.32 |
| 67121 | | |
| 67122 | | > fitmap #56 inMap #1 |
| 67123 | | |
| 67124 | | Fit map emd_3720_2017_leaf.map in map relion_locres_filtered_20240326_GT.mrc |
| 67125 | | using 99958 points |
| 67126 | | correlation = 0.6869, correlation about mean = 0.2749, overlap = 157.2 |
| 67127 | | steps = 236, shift = 22.7, angle = 34.9 degrees |
| 67128 | | |
| 67129 | | Position of emd_3720_2017_leaf.map (#56) relative to |
| 67130 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 67131 | | Matrix rotation and translation |
| 67132 | | -0.53804556 0.84152368 -0.04842391 217.98901816 |
| 67133 | | -0.84278716 -0.53807848 0.01346669 404.62940756 |
| 67134 | | -0.01472333 0.04805674 0.99873609 145.40110324 |
| 67135 | | Axis 0.02052818 -0.02000031 -0.99958921 |
| 67136 | | Axis point 220.49314606 140.31883812 0.00000000 |
| 67137 | | Rotation angle (degrees) 122.59477625 |
| 67138 | | Shift along axis -148.95916903 |
| 67139 | | |
| 67140 | | |
| 67141 | | > select subtract #56 |
| 67142 | | |
| 67143 | | Nothing selected |
| 67144 | | |
| 67145 | | > volume #56 level 0.1553 |
| 67146 | | |
| 67147 | | > fitmap #56 inMap #1 |
| 67148 | | |
| 67149 | | Fit map emd_3720_2017_leaf.map in map relion_locres_filtered_20240326_GT.mrc |
| 67150 | | using 58464 points |
| 67151 | | correlation = 0.7124, correlation about mean = 0.2183, overlap = 126.6 |
| 67152 | | steps = 48, shift = 0.054, angle = 0.0916 degrees |
| 67153 | | |
| 67154 | | Position of emd_3720_2017_leaf.map (#56) relative to |
| 67155 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 67156 | | Matrix rotation and translation |
| 67157 | | -0.53769722 0.84167956 -0.04957021 218.02664044 |
| 67158 | | -0.84301410 -0.53769614 0.01449435 404.48271442 |
| 67159 | | -0.01445412 0.04958195 0.99866546 145.17220156 |
| 67160 | | Axis 0.02081826 -0.02083516 -0.99956615 |
| 67161 | | Axis point 220.50989620 140.13520956 0.00000000 |
| 67162 | | Rotation angle (degrees) 122.57233532 |
| 67163 | | Shift along axis -148.99774609 |
| 67164 | | |
| 67165 | | |
| 67166 | | > open "/Users/becca/Desktop/Postdoc/Structure files/COPI |
| 67167 | | > structures/5nzr_COPI_coat_leaf_2017.cif" |
| 67168 | | |
| 67169 | | 5nzr_COPI_coat_leaf_2017.cif title: |
| 67170 | | The structure of the COPI coat leaf [more info...] |
| 67171 | | |
| 67172 | | Chain information for 5nzr_COPI_coat_leaf_2017.cif #57 |
| 67173 | | --- |
| 67174 | | Chain | Description | UniProt |
| 67175 | | A | Coatomer subunit alpha | COPA_MOUSE 1-1224 |
| 67176 | | B | Coatomer subunit beta | COPB_MOUSE 16-968 |
| 67177 | | C | Coatomer subunit beta' | COPB2_MOUSE 1-905 |
| 67178 | | D | Coatomer subunit delta | COPD_MOUSE 1-511 |
| 67179 | | F M R | ADP-ribosylation factor 1 | ARF1_YEAST 1-181 |
| 67180 | | G K | Coatomer subunit gamma-1 | COPG1_MOUSE 1-874 |
| 67181 | | L Z | Coatomer subunit zeta-1 | COPZ1_MOUSE 1-177 |
| 67182 | | |
| 67183 | | |
| 67184 | | > select add #57 |
| 67185 | | |
| 67186 | | 18970 atoms, 18952 bonds, 7 pseudobonds, 4746 residues, 2 models selected |
| 67187 | | |
| 67188 | | > hide sel atoms |
| 67189 | | |
| 67190 | | > show sel cartoons |
| 67191 | | |
| 67192 | | > view matrix models #57,1,0,0,121.05,0,1,0,117.63,0,0,1,248.75 |
| 67193 | | |
| 67194 | | > view matrix models #57,1,0,0,188.14,0,1,0,202.34,0,0,1,265.38 |
| 67195 | | |
| 67196 | | > ui mousemode right "rotate selected models" |
| 67197 | | |
| 67198 | | > view matrix models |
| 67199 | | > #57,-0.53664,0.8067,-0.24751,289.81,-0.76516,-0.58887,-0.2603,504.63,-0.35574,0.049695,0.93326,306.25 |
| 67200 | | |
| 67201 | | > ui mousemode right "translate selected models" |
| 67202 | | |
| 67203 | | > view matrix models |
| 67204 | | > #57,-0.53664,0.8067,-0.24751,305.82,-0.76516,-0.58887,-0.2603,520.33,-0.35574,0.049695,0.93326,310.17 |
| 67205 | | |
| 67206 | | > view matrix models |
| 67207 | | > #57,-0.53664,0.8067,-0.24751,316.06,-0.76516,-0.58887,-0.2603,517.32,-0.35574,0.049695,0.93326,286.43 |
| 67208 | | |
| 67209 | | > fitmap #57 inMap #1 |
| 67210 | | |
| 67211 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif (#57) to map |
| 67212 | | relion_locres_filtered_20240326_GT.mrc (#1) using 18970 atoms |
| 67213 | | average map value = 0.01164, steps = 192 |
| 67214 | | shifted from previous position = 19.8 |
| 67215 | | rotated from previous position = 19.8 degrees |
| 67216 | | atoms outside contour = 5803, contour level = 0.0054608 |
| 67217 | | |
| 67218 | | Position of 5nzr_COPI_coat_leaf_2017.cif (#57) relative to |
| 67219 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 67220 | | Matrix rotation and translation |
| 67221 | | -0.53780069 0.84149893 -0.05147785 218.34726608 |
| 67222 | | -0.84289565 -0.53793379 0.01241606 404.81621695 |
| 67223 | | -0.01724357 0.05006782 0.99859695 145.66655773 |
| 67224 | | Axis 0.02234309 -0.02031511 -0.99954394 |
| 67225 | | Axis point 220.87010415 140.20104413 0.00000000 |
| 67226 | | Rotation angle (degrees) 122.58626121 |
| 67227 | | Shift along axis -148.94545734 |
| 67228 | | |
| 67229 | | |
| 67230 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 67231 | | QTBUG which explains how to reproduce. |
| 67232 | | |
| 67233 | | > fitmap #57 inMap #56 |
| 67234 | | |
| 67235 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif (#57) to map emd_3720_2017_leaf.map |
| 67236 | | (#56) using 18970 atoms |
| 67237 | | average map value = 0.2037, steps = 48 |
| 67238 | | shifted from previous position = 0.242 |
| 67239 | | rotated from previous position = 0.13 degrees |
| 67240 | | atoms outside contour = 4747, contour level = 0.15531 |
| 67241 | | |
| 67242 | | Position of 5nzr_COPI_coat_leaf_2017.cif (#57) relative to |
| 67243 | | emd_3720_2017_leaf.map (#56) coordinates: |
| 67244 | | Matrix rotation and translation |
| 67245 | | 0.99999980 0.00000142 0.00063110 -0.06591244 |
| 67246 | | -0.00000152 0.99999999 0.00016366 -0.04258127 |
| 67247 | | -0.00063110 -0.00016366 0.99999979 0.08970355 |
| 67248 | | Axis -0.25102649 0.96797759 -0.00225653 |
| 67249 | | Axis point 142.01093826 0.00000000 114.37935577 |
| 67250 | | Rotation angle (degrees) 0.03735560 |
| 67251 | | Shift along axis -0.02487437 |
| 67252 | | |
| 67253 | | |
| 67254 | | > fitmap #57 inMap #56 |
| 67255 | | |
| 67256 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif (#57) to map emd_3720_2017_leaf.map |
| 67257 | | (#56) using 18970 atoms |
| 67258 | | average map value = 0.2037, steps = 40 |
| 67259 | | shifted from previous position = 0.0347 |
| 67260 | | rotated from previous position = 0.00433 degrees |
| 67261 | | atoms outside contour = 4741, contour level = 0.15531 |
| 67262 | | |
| 67263 | | Position of 5nzr_COPI_coat_leaf_2017.cif (#57) relative to |
| 67264 | | emd_3720_2017_leaf.map (#56) coordinates: |
| 67265 | | Matrix rotation and translation |
| 67266 | | 0.99999980 0.00003994 0.00063608 -0.06331889 |
| 67267 | | -0.00004000 1.00000000 0.00009884 0.00276701 |
| 67268 | | -0.00063608 -0.00009886 0.99999980 0.09022728 |
| 67269 | | Axis -0.15326201 0.98624069 -0.06196826 |
| 67270 | | Axis point 142.48451750 0.00000000 97.94240538 |
| 67271 | | Rotation angle (degrees) 0.03695303 |
| 67272 | | Shift along axis 0.00684209 |
| 67273 | | |
| 67274 | | |
| 67275 | | > select subtract #57 |
| 67276 | | |
| 67277 | | Nothing selected |
| 67278 | | |
| 67279 | | > hide #!1 models |
| 67280 | | |
| 67281 | | > hide #!57 models |
| 67282 | | |
| 67283 | | > show #!57 models |
| 67284 | | |
| 67285 | | > hide #!57 models |
| 67286 | | |
| 67287 | | > show #!57 models |
| 67288 | | |
| 67289 | | > hide #55 models |
| 67290 | | |
| 67291 | | > hide #!54 models |
| 67292 | | |
| 67293 | | > hide #53 models |
| 67294 | | |
| 67295 | | > hide #52 models |
| 67296 | | |
| 67297 | | > hide #51 models |
| 67298 | | |
| 67299 | | > hide #50 models |
| 67300 | | |
| 67301 | | > hide #!49 models |
| 67302 | | |
| 67303 | | > hide #48 models |
| 67304 | | |
| 67305 | | > hide #47 models |
| 67306 | | |
| 67307 | | > hide #!46 models |
| 67308 | | |
| 67309 | | > hide #!45 models |
| 67310 | | |
| 67311 | | > hide #!44 models |
| 67312 | | |
| 67313 | | > hide #!43 models |
| 67314 | | |
| 67315 | | > hide #42 models |
| 67316 | | |
| 67317 | | > hide #41 models |
| 67318 | | |
| 67319 | | > hide #39 models |
| 67320 | | |
| 67321 | | > hide #38 models |
| 67322 | | |
| 67323 | | > hide #!56 models |
| 67324 | | |
| 67325 | | > show #38 models |
| 67326 | | |
| 67327 | | > show #39 models |
| 67328 | | |
| 67329 | | > show #!56 models |
| 67330 | | |
| 67331 | | > hide #!56 models |
| 67332 | | |
| 67333 | | > show #!56 models |
| 67334 | | |
| 67335 | | > show #!1 models |
| 67336 | | |
| 67337 | | > hide #!1 models |
| 67338 | | |
| 67339 | | > hide #!56 models |
| 67340 | | |
| 67341 | | > hide #38 models |
| 67342 | | |
| 67343 | | > hide #39 models |
| 67344 | | |
| 67345 | | > show #41 models |
| 67346 | | |
| 67347 | | > show #42 models |
| 67348 | | |
| 67349 | | > show #!1 models |
| 67350 | | |
| 67351 | | > hide #!1 models |
| 67352 | | |
| 67353 | | > hide #41 models |
| 67354 | | |
| 67355 | | > hide #42 models |
| 67356 | | |
| 67357 | | > show #!43 models |
| 67358 | | |
| 67359 | | > show #!44 models |
| 67360 | | |
| 67361 | | > show #!45 models |
| 67362 | | |
| 67363 | | > show #!56 models |
| 67364 | | |
| 67365 | | > color #56 #ebebeb68 models |
| 67366 | | |
| 67367 | | > color #56 #ebebeb69 models |
| 67368 | | |
| 67369 | | > show #!1 models |
| 67370 | | |
| 67371 | | > color #1 #76d6ffff models |
| 67372 | | |
| 67373 | | > color #1 #76d6ffa1 models |
| 67374 | | |
| 67375 | | > hide #!1 models |
| 67376 | | |
| 67377 | | > hide #!56 models |
| 67378 | | |
| 67379 | | > show #!1 models |
| 67380 | | |
| 67381 | | > show #41 models |
| 67382 | | |
| 67383 | | > show #42 models |
| 67384 | | |
| 67385 | | > show #39 models |
| 67386 | | |
| 67387 | | > show #38 models |
| 67388 | | |
| 67389 | | > show #!46 models |
| 67390 | | |
| 67391 | | > show #47 models |
| 67392 | | |
| 67393 | | > show #48 models |
| 67394 | | |
| 67395 | | > show #!49 models |
| 67396 | | |
| 67397 | | > show #!56 models |
| 67398 | | |
| 67399 | | > hide #!1 models |
| 67400 | | |
| 67401 | | > hide #!56 models |
| 67402 | | |
| 67403 | | > hide #!49 models |
| 67404 | | |
| 67405 | | > hide #48 models |
| 67406 | | |
| 67407 | | > hide #47 models |
| 67408 | | |
| 67409 | | > hide #!46 models |
| 67410 | | |
| 67411 | | > hide #!45 models |
| 67412 | | |
| 67413 | | > hide #!44 models |
| 67414 | | |
| 67415 | | > hide #!43 models |
| 67416 | | |
| 67417 | | > hide #42 models |
| 67418 | | |
| 67419 | | > hide #41 models |
| 67420 | | |
| 67421 | | > hide #39 models |
| 67422 | | |
| 67423 | | > hide #38 models |
| 67424 | | |
| 67425 | | > show #!43 models |
| 67426 | | |
| 67427 | | > show #!44 models |
| 67428 | | |
| 67429 | | > show #!45 models |
| 67430 | | |
| 67431 | | > hide #!45 models |
| 67432 | | |
| 67433 | | > show #!45 models |
| 67434 | | |
| 67435 | | > hide #!45 models |
| 67436 | | |
| 67437 | | > hide #!44 models |
| 67438 | | |
| 67439 | | > hide #!43 models |
| 67440 | | |
| 67441 | | > show #!46 models |
| 67442 | | |
| 67443 | | > show #!1 models |
| 67444 | | |
| 67445 | | > volume #1 level 0.003895 |
| 67446 | | |
| 67447 | | > hide #!1 models |
| 67448 | | |
| 67449 | | > show #!56 models |
| 67450 | | |
| 67451 | | > hide #!56 models |
| 67452 | | |
| 67453 | | > show #!1 models |
| 67454 | | |
| 67455 | | > show #!56 models |
| 67456 | | |
| 67457 | | > hide #!56 models |
| 67458 | | |
| 67459 | | > hide #!1 models |
| 67460 | | |
| 67461 | | > hide #!46 models |
| 67462 | | |
| 67463 | | > show #47 models |
| 67464 | | |
| 67465 | | > show #48 models |
| 67466 | | |
| 67467 | | > show #!49 models |
| 67468 | | |
| 67469 | | > hide #!49 models |
| 67470 | | |
| 67471 | | > hide #48 models |
| 67472 | | |
| 67473 | | > hide #47 models |
| 67474 | | |
| 67475 | | > show #50 models |
| 67476 | | |
| 67477 | | > hide #50 models |
| 67478 | | |
| 67479 | | > show #!54 models |
| 67480 | | |
| 67481 | | > hide #!54 models |
| 67482 | | |
| 67483 | | > show #!54 models |
| 67484 | | |
| 67485 | | > show #55 models |
| 67486 | | |
| 67487 | | > show #38 models |
| 67488 | | |
| 67489 | | > show #39 models |
| 67490 | | |
| 67491 | | > show #50 models |
| 67492 | | |
| 67493 | | > show #41 models |
| 67494 | | |
| 67495 | | > hide #41 models |
| 67496 | | |
| 67497 | | > show #42 models |
| 67498 | | |
| 67499 | | > hide #42 models |
| 67500 | | |
| 67501 | | > show #!44 models |
| 67502 | | |
| 67503 | | > hide #!44 models |
| 67504 | | |
| 67505 | | > show #!45 models |
| 67506 | | |
| 67507 | | > hide #!45 models |
| 67508 | | |
| 67509 | | > show #!43 models |
| 67510 | | |
| 67511 | | > hide #!43 models |
| 67512 | | |
| 67513 | | > show #!43 models |
| 67514 | | |
| 67515 | | > hide #!43 models |
| 67516 | | |
| 67517 | | > show #41 models |
| 67518 | | |
| 67519 | | > hide #41 models |
| 67520 | | |
| 67521 | | > show #47 models |
| 67522 | | |
| 67523 | | > show #48 models |
| 67524 | | |
| 67525 | | > show #!43 models |
| 67526 | | |
| 67527 | | > show #!44 models |
| 67528 | | |
| 67529 | | > hide #48 models |
| 67530 | | |
| 67531 | | > hide #47 models |
| 67532 | | |
| 67533 | | > hide #!44 models |
| 67534 | | |
| 67535 | | > hide #!43 models |
| 67536 | | |
| 67537 | | > hide #38 models |
| 67538 | | |
| 67539 | | > hide #39 models |
| 67540 | | |
| 67541 | | > hide #50 models |
| 67542 | | |
| 67543 | | > hide #!54 models |
| 67544 | | |
| 67545 | | > hide #55 models |
| 67546 | | |
| 67547 | | > hide #!57 models |
| 67548 | | |
| 67549 | | > show #!56 models |
| 67550 | | |
| 67551 | | > show #!1 models |
| 67552 | | |
| 67553 | | > volume #1 level 0.005983 |
| 67554 | | |
| 67555 | | > hide #!1 models |
| 67556 | | |
| 67557 | | > show #!1 models |
| 67558 | | |
| 67559 | | > hide #!1 models |
| 67560 | | |
| 67561 | | > show #!1 models |
| 67562 | | |
| 67563 | | > hide #!1 models |
| 67564 | | |
| 67565 | | > show #!1 models |
| 67566 | | |
| 67567 | | > hide #!1 models |
| 67568 | | |
| 67569 | | > show #!1 models |
| 67570 | | |
| 67571 | | > color #1 darkgrey models |
| 67572 | | |
| 67573 | | > hide #!56 models |
| 67574 | | |
| 67575 | | > show #55 models |
| 67576 | | |
| 67577 | | > show #!54 models |
| 67578 | | |
| 67579 | | > show #53 models |
| 67580 | | |
| 67581 | | > show #52 models |
| 67582 | | |
| 67583 | | > show #51 models |
| 67584 | | |
| 67585 | | > show #50 models |
| 67586 | | |
| 67587 | | > show #!49 models |
| 67588 | | |
| 67589 | | > show #48 models |
| 67590 | | |
| 67591 | | > show #47 models |
| 67592 | | |
| 67593 | | > show #!46 models |
| 67594 | | |
| 67595 | | > show #!45 models |
| 67596 | | |
| 67597 | | > show #!44 models |
| 67598 | | |
| 67599 | | > show #!43 models |
| 67600 | | |
| 67601 | | > show #42 models |
| 67602 | | |
| 67603 | | > show #41 models |
| 67604 | | |
| 67605 | | > show #39 models |
| 67606 | | |
| 67607 | | > show #38 models |
| 67608 | | |
| 67609 | | > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 67610 | | > dataset/Chimera sessions/20240805_leaf_fitting_AF3_final_with_2017comp.cxs" |
| 67611 | | |
| 67612 | | > hide #!43 models |
| 67613 | | |
| 67614 | | > show #!43 models |
| 67615 | | |
| 67616 | | > hide #!43 models |
| 67617 | | |
| 67618 | | > show #!43 models |
| 67619 | | |
| 67620 | | > hide #!43 models |
| 67621 | | |
| 67622 | | > show #!43 models |
| 67623 | | |
| 67624 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 67625 | | > paper/Chimera sessions/20240805_COPI_leaf_fitting_AF3_final.cxs" |
| 67626 | | |
| 67627 | | > volume #1 level 0.006 |
| 67628 | | |
| 67629 | | > save /Users/becca/Desktop/image1.png supersample 3 |
| 67630 | | |
| 67631 | | > volume #1 level 0.004985 |
| 67632 | | |
| 67633 | | > volume #1 level 0.005 |
| 67634 | | |
| 67635 | | > save /Users/becca/Desktop/image2.png supersample 3 |
| 67636 | | |
| 67637 | | > volume #1 level 0.0006 |
| 67638 | | |
| 67639 | | > volume #1 level 0.006 |
| 67640 | | |
| 67641 | | > volume #1 level 0.007 |
| 67642 | | |
| 67643 | | > volume #1 level 0.005 |
| 67644 | | |
| 67645 | | > save /Users/becca/Desktop/image3.png supersample 3 |
| 67646 | | |
| 67647 | | > save /Users/becca/Desktop/image4.png supersample 3 |
| 67648 | | |
| 67649 | | > volume #1 level 0.007 |
| 67650 | | |
| 67651 | | > volume #1 level 0.008 |
| 67652 | | |
| 67653 | | > save /Users/becca/Desktop/image5.png supersample 3 |
| 67654 | | |
| 67655 | | > save /Users/becca/Desktop/image6.png supersample 3 |
| 67656 | | |
| 67657 | | > lighting flat |
| 67658 | | |
| 67659 | | [Repeated 1 time(s)] |
| 67660 | | |
| 67661 | | > lighting simple |
| 67662 | | |
| 67663 | | > graphics silhouettes false |
| 67664 | | |
| 67665 | | > graphics silhouettes true |
| 67666 | | |
| 67667 | | > graphics silhouettes false |
| 67668 | | |
| 67669 | | > graphics silhouettes true |
| 67670 | | |
| 67671 | | > graphics silhouettes false |
| 67672 | | |
| 67673 | | > lighting shadows true |
| 67674 | | |
| 67675 | | > lighting shadows false |
| 67676 | | |
| 67677 | | > graphics silhouettes true |
| 67678 | | |
| 67679 | | > lighting soft |
| 67680 | | |
| 67681 | | > lighting full |
| 67682 | | |
| 67683 | | > graphics silhouettes false |
| 67684 | | |
| 67685 | | > lighting shadows false |
| 67686 | | |
| 67687 | | > lighting simple |
| 67688 | | |
| 67689 | | > set bgColor white |
| 67690 | | |
| 67691 | | > surface dust #1 size 17.1 |
| 67692 | | |
| 67693 | | > volume #!1 style surface |
| 67694 | | |
| 67695 | | > volume #!1 style mesh |
| 67696 | | |
| 67697 | | [Repeated 1 time(s)] |
| 67698 | | |
| 67699 | | > volume #!1 style surface |
| 67700 | | |
| 67701 | | > volume #!1 showOutlineBox true |
| 67702 | | |
| 67703 | | > volume #!1 showOutlineBox false |
| 67704 | | |
| 67705 | | > volume #!1 showOutlineBox true |
| 67706 | | |
| 67707 | | > volume #!1 showOutlineBox false |
| 67708 | | |
| 67709 | | > set bgColor white |
| 67710 | | |
| 67711 | | > lighting simple |
| 67712 | | |
| 67713 | | > save /Users/becca/Desktop/image1.png supersample 3 |
| 67714 | | |
| 67715 | | > graphics silhouettes true |
| 67716 | | |
| 67717 | | > save /Users/becca/Desktop/image1.png supersample 3 |
| 67718 | | |
| 67719 | | [Repeated 1 time(s)] |
| 67720 | | |
| 67721 | | > volume #1 level 0.005 |
| 67722 | | |
| 67723 | | > save /Users/becca/Desktop/image1.png supersample 3 |
| 67724 | | |
| 67725 | | [Repeated 1 time(s)] |
| 67726 | | |
| 67727 | | > volume #1 level 0.008 |
| 67728 | | |
| 67729 | | > save /Users/becca/Desktop/image1.png supersample 3 |
| 67730 | | |
| 67731 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 67732 | | > dataset/Structure files/relion_locres_filtered_20240326_GT.mrc" |
| 67733 | | |
| 67734 | | Opened relion_locres_filtered_20240326_GT.mrc as #58, grid size 292,292,292, |
| 67735 | | pixel 1.71, shown at level 0.00473, step 2, values float32 |
| 67736 | | |
| 67737 | | > select add #58 |
| 67738 | | |
| 67739 | | 2 models selected |
| 67740 | | |
| 67741 | | > view matrix models #58,1,0,0,64.329,0,1,0,76.949,0,0,1,20.463 |
| 67742 | | |
| 67743 | | > view matrix models #58,1,0,0,68.607,0,1,0,91.17,0,0,1,74.656 |
| 67744 | | |
| 67745 | | > fitmap #58 inMap #1 |
| 67746 | | |
| 67747 | | Fit map relion_locres_filtered_20240326_GT.mrc in map |
| 67748 | | relion_locres_filtered_20240326_GT.mrc using 30918 points |
| 67749 | | correlation = 0.6038, correlation about mean = 0.1653, overlap = 1.453 |
| 67750 | | steps = 84, shift = 5.22, angle = 2.66 degrees |
| 67751 | | |
| 67752 | | Position of relion_locres_filtered_20240326_GT.mrc (#58) relative to |
| 67753 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 67754 | | Matrix rotation and translation |
| 67755 | | 0.99895433 -0.00859686 -0.04490377 18.37182947 |
| 67756 | | 0.00961465 0.99970062 0.02249936 1.28166739 |
| 67757 | | 0.04469690 -0.02290757 0.99873792 -9.26075418 |
| 67758 | | Axis -0.44478721 -0.87769046 0.17839225 |
| 67759 | | Axis point 171.87024853 0.00000000 296.68672427 |
| 67760 | | Rotation angle (degrees) 2.92584492 |
| 67761 | | Shift along axis -10.94850867 |
| 67762 | | |
| 67763 | | |
| 67764 | | > view matrix models |
| 67765 | | > #58,0.999,-0.021218,-0.039478,80.16,0.021704,0.99969,0.011922,65.861,0.039213,-0.012766,0.99915,66.634 |
| 67766 | | |
| 67767 | | > fitmap #58 inMap #1 |
| 67768 | | |
| 67769 | | Fit map relion_locres_filtered_20240326_GT.mrc in map |
| 67770 | | relion_locres_filtered_20240326_GT.mrc using 30918 points |
| 67771 | | correlation = 1, correlation about mean = 1, overlap = 3.367 |
| 67772 | | steps = 124, shift = 2.8, angle = 2.92 degrees |
| 67773 | | |
| 67774 | | Position of relion_locres_filtered_20240326_GT.mrc (#58) relative to |
| 67775 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 67776 | | Matrix rotation and translation |
| 67777 | | 0.99999999 -0.00010768 -0.00013271 0.06368984 |
| 67778 | | 0.00010767 0.99999999 -0.00005201 -0.02406001 |
| 67779 | | 0.00013271 0.00005200 0.99999999 -0.05210822 |
| 67780 | | Axis 0.29111674 -0.74291984 0.60276128 |
| 67781 | | Axis point 415.41817640 0.00000000 468.90051984 |
| 67782 | | Rotation angle (degrees) 0.01023486 |
| 67783 | | Shift along axis 0.00500702 |
| 67784 | | |
| 67785 | | |
| 67786 | | > volume #58 level 0.008 |
| 67787 | | |
| 67788 | | > color #58 silver models |
| 67789 | | |
| 67790 | | > color #58 white models |
| 67791 | | |
| 67792 | | > ui tool show "Color Zone" |
| 67793 | | |
| 67794 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 67795 | | QTBUG which explains how to reproduce. |
| 67796 | | |
| 67797 | | [Repeated 1 time(s)] |
| 67798 | | |
| 67799 | | > color zone #58 near #38 distance 10.26 |
| 67800 | | |
| 67801 | | > hide #!1 models |
| 67802 | | |
| 67803 | | > select subtract #58 |
| 67804 | | |
| 67805 | | Nothing selected |
| 67806 | | |
| 67807 | | > color zone #58 near #38 distance 10.93 |
| 67808 | | |
| 67809 | | > color zone #58 near #38 distance 4.35 |
| 67810 | | |
| 67811 | | > color zone #58 near #38 distance 5.21 |
| 67812 | | |
| 67813 | | > color zone #58 near #38 distance 5.14 |
| 67814 | | |
| 67815 | | > color zone #58 near #39 distance 5.14 |
| 67816 | | |
| 67817 | | > volume splitbyzone #58 |
| 67818 | | |
| 67819 | | Opened relion_locres_filtered_20240326_GT.mrc 0 as #59.1, grid size |
| 67820 | | 292,292,292, pixel 1.71, shown at level 0.008, step 1, values float32 |
| 67821 | | Opened relion_locres_filtered_20240326_GT.mrc 1 as #59.2, grid size |
| 67822 | | 292,292,292, pixel 1.71, shown at level 0.008, step 1, values float32 |
| 67823 | | |
| 67824 | | > hide #!59.2 models |
| 67825 | | |
| 67826 | | > show #!59.2 models |
| 67827 | | |
| 67828 | | > hide #!59.1 models |
| 67829 | | |
| 67830 | | > show #!59.1 models |
| 67831 | | |
| 67832 | | > hide #!59.2 models |
| 67833 | | |
| 67834 | | > show #!59.2 models |
| 67835 | | |
| 67836 | | > color zone #58 near #38 distance 5.14 |
| 67837 | | |
| 67838 | | [Repeated 1 time(s)] |
| 67839 | | |
| 67840 | | > color zone #59.1 near #38 distance 10.26 |
| 67841 | | |
| 67842 | | [Repeated 1 time(s)] |
| 67843 | | |
| 67844 | | > color zone #59.1 near #41 distance 9.26 |
| 67845 | | |
| 67846 | | > color zone #59.1 near #41 distance 9.16 |
| 67847 | | |
| 67848 | | > color zone #59.1 near #41 distance 9.06 |
| 67849 | | |
| 67850 | | > color zone #59.1 near #41 distance 8.96 |
| 67851 | | |
| 67852 | | > color zone #59.1 near #41 distance 8.86 |
| 67853 | | |
| 67854 | | > color zone #59.1 near #41 distance 8.76 |
| 67855 | | |
| 67856 | | > color zone #59.1 near #41 distance 8.66 |
| 67857 | | |
| 67858 | | > color zone #59.1 near #41 distance 8.56 |
| 67859 | | |
| 67860 | | > color zone #59.1 near #41 distance 8.46 |
| 67861 | | |
| 67862 | | > color zone #59.1 near #41 distance 8.36 |
| 67863 | | |
| 67864 | | > color zone #59.1 near #41 distance 8.26 |
| 67865 | | |
| 67866 | | > color zone #59.1 near #41 distance 8.16 |
| 67867 | | |
| 67868 | | > color zone #59.1 near #41 distance 8.06 |
| 67869 | | |
| 67870 | | > color zone #59.1 near #41 distance 7.96 |
| 67871 | | |
| 67872 | | > color zone #59.1 near #38 distance 7.96 |
| 67873 | | |
| 67874 | | > help help:user/tools/colorzone.html |
| 67875 | | |
| 67876 | | > close #59.1 |
| 67877 | | |
| 67878 | | > close #59 |
| 67879 | | |
| 67880 | | > show #!58 models |
| 67881 | | |
| 67882 | | > color zone #58 near #38 distance 5.14 |
| 67883 | | |
| 67884 | | > color zone #58 near #39 distance 5.14 |
| 67885 | | |
| 67886 | | > combine #38 #39 #41 #42 #43 #44 #45 #46 #47 #48 #49 #50 #51 #52 #53 #54 #55 |
| 67887 | | |
| 67888 | | Remapping chain ID 'D' in 20240711_copi_golph3_alpha_I592-G900.cif #39 to 'E' |
| 67889 | | Remapping chain ID 'F' in 20240711_copi_golph3_betaprime_L587-D905.cif #42 to |
| 67890 | | 'G' |
| 67891 | | Remapping chain ID 'E' in 20240711_copi_golph3_beta_S711-L953.cif #43 to 'H' |
| 67892 | | Remapping chain ID 'E' in 20240711_copi_golph3_beta_H311-E659.cif #44 to 'I' |
| 67893 | | Remapping chain ID 'E' in 20240711_copi_golph3_beta_M1-H311_K660-A710.cif #45 |
| 67894 | | to 'J' |
| 67895 | | Remapping chain ID 'G' in 20240711_copi_golph3_delta_M1-S273.cif #46 to 'K' |
| 67896 | | Remapping chain ID 'H' in 20240711_copi_golph3_gamma1_K300-F448.cif #47 to 'L' |
| 67897 | | Remapping chain ID 'H' in 20240711_copi_golph3_gamma1_M1-P299.cif #48 to 'M' |
| 67898 | | Remapping chain ID 'H' in 20240711_copi_golph3_gammm1_T449-R609.cif #49 to 'N' |
| 67899 | | Remapping chain ID 'I' in 20240711_copi_golph3_zeta1.cif #50 to 'O' |
| 67900 | | Remapping chain ID 'B' in 20240711_copi_golph3_third_Arf1.cif #53 to 'P' |
| 67901 | | Remapping chain ID 'A' in 20240711_copi_golph3_golph3_.cif #55 to 'Q' |
| 67902 | | |
| 67903 | | > hide #!59 models |
| 67904 | | |
| 67905 | | > show #!59 models |
| 67906 | | |
| 67907 | | > hide #55 models |
| 67908 | | |
| 67909 | | > hide #!54 models |
| 67910 | | |
| 67911 | | > hide #53 models |
| 67912 | | |
| 67913 | | > hide #52 models |
| 67914 | | |
| 67915 | | > hide #51 models |
| 67916 | | |
| 67917 | | > hide #50 models |
| 67918 | | |
| 67919 | | > hide #!49 models |
| 67920 | | |
| 67921 | | > hide #48 models |
| 67922 | | |
| 67923 | | > hide #47 models |
| 67924 | | |
| 67925 | | > hide #!46 models |
| 67926 | | |
| 67927 | | > hide #!45 models |
| 67928 | | |
| 67929 | | > hide #!44 models |
| 67930 | | |
| 67931 | | > hide #!43 models |
| 67932 | | |
| 67933 | | > hide #42 models |
| 67934 | | |
| 67935 | | > hide #41 models |
| 67936 | | |
| 67937 | | > hide #39 models |
| 67938 | | |
| 67939 | | > hide #38 models |
| 67940 | | |
| 67941 | | > hide #!58 models |
| 67942 | | |
| 67943 | | > color zone #58 near #59 distance 5.14 |
| 67944 | | |
| 67945 | | > show #!58 models |
| 67946 | | |
| 67947 | | > hide #!59 models |
| 67948 | | |
| 67949 | | > color zone #58 near #59 distance 4.97 |
| 67950 | | |
| 67951 | | > color zone #58 near #59 distance 4.45 |
| 67952 | | |
| 67953 | | > surface dust #58 size 17.1 |
| 67954 | | |
| 67955 | | > color zone #58 near #59 distance 4.31 |
| 67956 | | |
| 67957 | | > color zone #58 near #59 distance 4.7 |
| 67958 | | |
| 67959 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 67960 | | QTBUG which explains how to reproduce. |
| 67961 | | |
| 67962 | | > volume #58 step 1 |
| 67963 | | |
| 67964 | | > volume #58 level 0.005 |
| 67965 | | |
| 67966 | | > color zone #58 near #59 distance 5.19 |
| 67967 | | |
| 67968 | | > set bgColor white |
| 67969 | | |
| 67970 | | > save /Users/becca/Desktop/image1.png supersample 3 |
| 67971 | | |
| 67972 | | > lighting simple |
| 67973 | | |
| 67974 | | > graphics silhouettes false |
| 67975 | | |
| 67976 | | > graphics silhouettes true |
| 67977 | | |
| 67978 | | > volume #58 level 0.008 |
| 67979 | | |
| 67980 | | > save /Users/becca/Desktop/image1.png supersample 3 |
| 67981 | | |
| 67982 | | > volume #58 level 0.005 |
| 67983 | | |
| 67984 | | > color zone #58 near #59 distance 5.43 |
| 67985 | | |
| 67986 | | > color zone #58 near #59 distance 6.99 |
| 67987 | | |
| 67988 | | > save /Users/becca/Desktop/image1.png supersample 3 |
| 67989 | | |
| 67990 | | > volume #58 level 0.008 |
| 67991 | | |
| 67992 | | > save /Users/becca/Desktop/image1.png supersample 3 |
| 67993 | | |
| 67994 | | > hide #!58 models |
| 67995 | | |
| 67996 | | > show #!59 models |
| 67997 | | |
| 67998 | | > rename #59 combined_model_COPI_GOLPH3 |
| 67999 | | |
| 68000 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 68001 | | > paper/Chimera sessions/20240806_COPI_leaf_AF3_for_figs_v1.cxs" |
| 68002 | | |
| 68003 | | > show #!1 models |
| 68004 | | |
| 68005 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 68006 | | > paper/Chimera sessions/20240806_COPI_leaf_AF3_for_figs_v1.cxs" |
| 68007 | | |
| 68008 | | > hide #!59 models |
| 68009 | | |
| 68010 | | > show #!58 models |
| 68011 | | |
| 68012 | | > hide #!1 models |
| 68013 | | |
| 68014 | | > volume #58 level 0.005 |
| 68015 | | |
| 68016 | | > ui mousemode right "map eraser" |
| 68017 | | |
| 68018 | | > volume erase #58 center 281.84,261.87,305.71 radius 22.725 |
| 68019 | | |
| 68020 | | Opened relion_locres_filtered_20240326_GT.mrc copy as #61, grid size |
| 68021 | | 292,292,292, pixel 1.71, shown at step 1, values float32 |
| 68022 | | |
| 68023 | | > surface dust #61 size 17.1 |
| 68024 | | |
| 68025 | | > color zone #61 near #59 distance 10.26 |
| 68026 | | |
| 68027 | | > color zone #61 near #59 distance 10.16 |
| 68028 | | |
| 68029 | | > color zone #61 near #59 distance 6.84 |
| 68030 | | |
| 68031 | | > save /Users/becca/Desktop/image1.png supersample 3 |
| 68032 | | |
| 68033 | | > volume #61 level 0.008 |
| 68034 | | |
| 68035 | | > save /Users/becca/Desktop/image2.png supersample 3 |
| 68036 | | |
| 68037 | | > volume #61 level 0.005 |
| 68038 | | |
| 68039 | | > save /Users/becca/Desktop/image3.png supersample 3 |
| 68040 | | |
| 68041 | | > volume #61 level 0.008 |
| 68042 | | |
| 68043 | | > save /Users/becca/Desktop/image4.png supersample 3 |
| 68044 | | |
| 68045 | | > color zone #61 near #59 distance 4.76 |
| 68046 | | |
| 68047 | | > color zone #61 near #59 distance 4.4 |
| 68048 | | |
| 68049 | | > color zone #61 near #59 distance 5.99 |
| 68050 | | |
| 68051 | | > save /Users/becca/Desktop/image5.png supersample 3 |
| 68052 | | |
| 68053 | | > hide #!61 models |
| 68054 | | |
| 68055 | | > show #!1 models |
| 68056 | | |
| 68057 | | > color #1 #a9a9a9a0 models |
| 68058 | | |
| 68059 | | > hide #!1 models |
| 68060 | | |
| 68061 | | > color #1 #a9a9a9a1 models |
| 68062 | | |
| 68063 | | > show #!1 models |
| 68064 | | |
| 68065 | | > show #!57 models |
| 68066 | | |
| 68067 | | > hide #!57 models |
| 68068 | | |
| 68069 | | > show #!59 models |
| 68070 | | |
| 68071 | | > hide #!1 models |
| 68072 | | |
| 68073 | | > show #!1 models |
| 68074 | | |
| 68075 | | > hide #!1 models |
| 68076 | | |
| 68077 | | > ui mousemode right select |
| 68078 | | |
| 68079 | | > select #59/O:73 |
| 68080 | | |
| 68081 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 68082 | | |
| 68083 | | > show sel atoms |
| 68084 | | |
| 68085 | | > style sel stick |
| 68086 | | |
| 68087 | | Changed 8 atom styles |
| 68088 | | |
| 68089 | | > select #59/O:74 |
| 68090 | | |
| 68091 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 68092 | | |
| 68093 | | > show sel atoms |
| 68094 | | |
| 68095 | | > style sel stick |
| 68096 | | |
| 68097 | | Changed 8 atom styles |
| 68098 | | |
| 68099 | | > select #59/O:72 |
| 68100 | | |
| 68101 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 68102 | | |
| 68103 | | > show sel atoms |
| 68104 | | |
| 68105 | | > show sel cartoons |
| 68106 | | |
| 68107 | | > style sel stick |
| 68108 | | |
| 68109 | | Changed 6 atom styles |
| 68110 | | |
| 68111 | | > show #!1 models |
| 68112 | | |
| 68113 | | > hide #!1 models |
| 68114 | | |
| 68115 | | > select #59/O:108 |
| 68116 | | |
| 68117 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 68118 | | |
| 68119 | | > show sel atoms |
| 68120 | | |
| 68121 | | > style sel stick |
| 68122 | | |
| 68123 | | Changed 8 atom styles |
| 68124 | | |
| 68125 | | > select #59/O:107 |
| 68126 | | |
| 68127 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 68128 | | |
| 68129 | | > style sel stick |
| 68130 | | |
| 68131 | | Changed 9 atom styles |
| 68132 | | |
| 68133 | | > show sel atoms |
| 68134 | | |
| 68135 | | > select #59/O:109 |
| 68136 | | |
| 68137 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 68138 | | |
| 68139 | | > select #59/O:108 |
| 68140 | | |
| 68141 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 68142 | | |
| 68143 | | > select #59/O:108 |
| 68144 | | |
| 68145 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 68146 | | |
| 68147 | | > select #59/O:109 |
| 68148 | | |
| 68149 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 68150 | | |
| 68151 | | > show sel atoms |
| 68152 | | |
| 68153 | | > style sel stick |
| 68154 | | |
| 68155 | | Changed 7 atom styles |
| 68156 | | |
| 68157 | | > select #59/O:106 |
| 68158 | | |
| 68159 | | 11 atoms, 10 bonds, 1 residue, 1 model selected |
| 68160 | | |
| 68161 | | > show sel atoms |
| 68162 | | |
| 68163 | | > style sel stick |
| 68164 | | |
| 68165 | | Changed 11 atom styles |
| 68166 | | |
| 68167 | | > show #!1 models |
| 68168 | | |
| 68169 | | > hide #!1 models |
| 68170 | | |
| 68171 | | > show #!1 models |
| 68172 | | |
| 68173 | | > hide #!1 models |
| 68174 | | |
| 68175 | | > show #!1 models |
| 68176 | | |
| 68177 | | > hide #!1 models |
| 68178 | | |
| 68179 | | > select #59/Q:223 |
| 68180 | | |
| 68181 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 68182 | | |
| 68183 | | > show sel atoms |
| 68184 | | |
| 68185 | | > style sel stick |
| 68186 | | |
| 68187 | | Changed 8 atom styles |
| 68188 | | |
| 68189 | | > select clear |
| 68190 | | |
| 68191 | | > select #59/Q:224 |
| 68192 | | |
| 68193 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 68194 | | |
| 68195 | | > show sel atoms |
| 68196 | | |
| 68197 | | > style sel stick |
| 68198 | | |
| 68199 | | Changed 9 atom styles |
| 68200 | | |
| 68201 | | > select #59/Q:225 |
| 68202 | | |
| 68203 | | 14 atoms, 15 bonds, 1 residue, 1 model selected |
| 68204 | | |
| 68205 | | > show sel atoms |
| 68206 | | |
| 68207 | | > style sel stick |
| 68208 | | |
| 68209 | | Changed 14 atom styles |
| 68210 | | |
| 68211 | | > select #59/Q:259 |
| 68212 | | |
| 68213 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 68214 | | |
| 68215 | | > show sel atoms |
| 68216 | | |
| 68217 | | > style sel stick |
| 68218 | | |
| 68219 | | Changed 9 atom styles |
| 68220 | | |
| 68221 | | > select #59/Q:263 |
| 68222 | | |
| 68223 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 68224 | | |
| 68225 | | > show sel atoms |
| 68226 | | |
| 68227 | | > style sel stick |
| 68228 | | |
| 68229 | | Changed 8 atom styles |
| 68230 | | |
| 68231 | | > show #!1 models |
| 68232 | | |
| 68233 | | > hide #!1 models |
| 68234 | | |
| 68235 | | > show #!1 models |
| 68236 | | |
| 68237 | | > hide #!1 models |
| 68238 | | |
| 68239 | | > show #!1 models |
| 68240 | | |
| 68241 | | > hide #!1 models |
| 68242 | | |
| 68243 | | > select #59/Q:225 |
| 68244 | | |
| 68245 | | 14 atoms, 15 bonds, 1 residue, 1 model selected |
| 68246 | | |
| 68247 | | > select #59/Q:226 |
| 68248 | | |
| 68249 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 68250 | | |
| 68251 | | > show sel atoms |
| 68252 | | |
| 68253 | | > style sel stick |
| 68254 | | |
| 68255 | | Changed 7 atom styles |
| 68256 | | |
| 68257 | | > select clear |
| 68258 | | |
| 68259 | | > select #59/Q:225 |
| 68260 | | |
| 68261 | | 14 atoms, 15 bonds, 1 residue, 1 model selected |
| 68262 | | |
| 68263 | | > select #59/Q:226@CB |
| 68264 | | |
| 68265 | | 1 atom, 1 residue, 1 model selected |
| 68266 | | |
| 68267 | | > select #59/Q:226@CA |
| 68268 | | |
| 68269 | | 1 atom, 1 residue, 1 model selected |
| 68270 | | |
| 68271 | | > select #59/Q:226 |
| 68272 | | |
| 68273 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 68274 | | |
| 68275 | | > select #59/O:107@NZ |
| 68276 | | |
| 68277 | | 1 atom, 1 residue, 1 model selected |
| 68278 | | |
| 68279 | | > select #59/Q:259 |
| 68280 | | |
| 68281 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 68282 | | |
| 68283 | | > select #59/O:106@CG |
| 68284 | | |
| 68285 | | 1 atom, 1 residue, 1 model selected |
| 68286 | | |
| 68287 | | > select clear |
| 68288 | | |
| 68289 | | [Repeated 1 time(s)] |
| 68290 | | |
| 68291 | | > select #59/O:106 |
| 68292 | | |
| 68293 | | 11 atoms, 10 bonds, 1 residue, 1 model selected |
| 68294 | | |
| 68295 | | > hide sel atoms |
| 68296 | | |
| 68297 | | > select #59/O:108@CB |
| 68298 | | |
| 68299 | | 1 atom, 1 residue, 1 model selected |
| 68300 | | |
| 68301 | | > hide sel atoms |
| 68302 | | |
| 68303 | | > undo |
| 68304 | | |
| 68305 | | > select #59/O:107 |
| 68306 | | |
| 68307 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 68308 | | |
| 68309 | | > select #59/O:108 |
| 68310 | | |
| 68311 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 68312 | | |
| 68313 | | > hide sel atoms |
| 68314 | | |
| 68315 | | > select clear |
| 68316 | | |
| 68317 | | > select #59/Q:263 |
| 68318 | | |
| 68319 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 68320 | | |
| 68321 | | > hide sel atoms |
| 68322 | | |
| 68323 | | > show #!1 models |
| 68324 | | |
| 68325 | | > select #59/M:12 |
| 68326 | | |
| 68327 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 68328 | | |
| 68329 | | > select #59/M:1 |
| 68330 | | |
| 68331 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 68332 | | |
| 68333 | | > hide sel cartoons |
| 68334 | | |
| 68335 | | > select #59/M:3 |
| 68336 | | |
| 68337 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 68338 | | |
| 68339 | | > select #59/M:2 |
| 68340 | | |
| 68341 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 68342 | | |
| 68343 | | > hide sel atoms |
| 68344 | | |
| 68345 | | [Repeated 1 time(s)] |
| 68346 | | |
| 68347 | | > select #59/M:3 |
| 68348 | | |
| 68349 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 68350 | | |
| 68351 | | > select #59/M:2 |
| 68352 | | |
| 68353 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 68354 | | |
| 68355 | | > hide sel cartoons |
| 68356 | | |
| 68357 | | > select clear |
| 68358 | | |
| 68359 | | > select #59/M:3 |
| 68360 | | |
| 68361 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 68362 | | |
| 68363 | | > hide sel cartoons |
| 68364 | | |
| 68365 | | > select clear |
| 68366 | | |
| 68367 | | > select #59/M:4 |
| 68368 | | |
| 68369 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 68370 | | |
| 68371 | | > hide sel cartoons |
| 68372 | | |
| 68373 | | > select clear |
| 68374 | | |
| 68375 | | > select #59/M:5 |
| 68376 | | |
| 68377 | | 11 atoms, 11 bonds, 1 residue, 1 model selected |
| 68378 | | |
| 68379 | | > hide sel cartoons |
| 68380 | | |
| 68381 | | > select #59/M:16 |
| 68382 | | |
| 68383 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 68384 | | |
| 68385 | | > select #59/M:6 |
| 68386 | | |
| 68387 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 68388 | | |
| 68389 | | > hide sel atoms |
| 68390 | | |
| 68391 | | > hide sel cartoons |
| 68392 | | |
| 68393 | | > select #59/M:7 |
| 68394 | | |
| 68395 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 68396 | | |
| 68397 | | > hide sel cartoons |
| 68398 | | |
| 68399 | | > select #59/M:8 |
| 68400 | | |
| 68401 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 68402 | | |
| 68403 | | > hide sel cartoons |
| 68404 | | |
| 68405 | | > select #1 |
| 68406 | | |
| 68407 | | 2 models selected |
| 68408 | | |
| 68409 | | > select #59/M:9 |
| 68410 | | |
| 68411 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 68412 | | |
| 68413 | | > hide sel cartoons |
| 68414 | | |
| 68415 | | > select #1 |
| 68416 | | |
| 68417 | | 2 models selected |
| 68418 | | |
| 68419 | | > select #1 |
| 68420 | | |
| 68421 | | 2 models selected |
| 68422 | | |
| 68423 | | > select clear |
| 68424 | | |
| 68425 | | > select #1 |
| 68426 | | |
| 68427 | | 2 models selected |
| 68428 | | |
| 68429 | | > select clear |
| 68430 | | |
| 68431 | | > select #59/M:10 |
| 68432 | | |
| 68433 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 68434 | | |
| 68435 | | > hide sel cartoons |
| 68436 | | |
| 68437 | | > select clear |
| 68438 | | |
| 68439 | | > select #59/M:11 |
| 68440 | | |
| 68441 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 68442 | | |
| 68443 | | > hide sel cartoons |
| 68444 | | |
| 68445 | | > select #59/M:12 |
| 68446 | | |
| 68447 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 68448 | | |
| 68449 | | > hide sel cartoons |
| 68450 | | |
| 68451 | | > select #59/M:13 |
| 68452 | | |
| 68453 | | 4 atoms, 3 bonds, 1 residue, 1 model selected |
| 68454 | | |
| 68455 | | > hide sel cartoons |
| 68456 | | |
| 68457 | | > select #59/M:14 |
| 68458 | | |
| 68459 | | 4 atoms, 3 bonds, 1 residue, 1 model selected |
| 68460 | | |
| 68461 | | > hide sel cartoons |
| 68462 | | |
| 68463 | | > select #59/M:15 |
| 68464 | | |
| 68465 | | 4 atoms, 3 bonds, 1 residue, 1 model selected |
| 68466 | | |
| 68467 | | > hide sel cartoons |
| 68468 | | |
| 68469 | | > select #59/M:16 |
| 68470 | | |
| 68471 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 68472 | | |
| 68473 | | > hide sel cartoons |
| 68474 | | |
| 68475 | | > select #59/K:255 |
| 68476 | | |
| 68477 | | 4 atoms, 3 bonds, 1 residue, 1 model selected |
| 68478 | | |
| 68479 | | > delete sel |
| 68480 | | |
| 68481 | | > select #59/K:254 |
| 68482 | | |
| 68483 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 68484 | | |
| 68485 | | > delete sel |
| 68486 | | |
| 68487 | | > select #59/K:253 |
| 68488 | | |
| 68489 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 68490 | | |
| 68491 | | > delete sel |
| 68492 | | |
| 68493 | | > select #59/K:252 |
| 68494 | | |
| 68495 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 68496 | | |
| 68497 | | > delete sel |
| 68498 | | |
| 68499 | | > select #59/K:251 |
| 68500 | | |
| 68501 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 68502 | | |
| 68503 | | > delete sel |
| 68504 | | |
| 68505 | | > select #59/K:250 |
| 68506 | | |
| 68507 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 68508 | | |
| 68509 | | > delete sel |
| 68510 | | |
| 68511 | | > select #59/K:249 |
| 68512 | | |
| 68513 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 68514 | | |
| 68515 | | > delete sel |
| 68516 | | |
| 68517 | | > select #59/K:248 |
| 68518 | | |
| 68519 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 68520 | | |
| 68521 | | > delete sel |
| 68522 | | |
| 68523 | | > select #59/K:247 |
| 68524 | | |
| 68525 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 68526 | | |
| 68527 | | > delete sel |
| 68528 | | |
| 68529 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 68530 | | > paper/Chimera sessions/20240806_COPI_leaf_AF3_for_figs_v2.cxs" |
| 68531 | | |
| 68532 | | > show #!61 models |
| 68533 | | |
| 68534 | | > hide #!1 models |
| 68535 | | |
| 68536 | | > color zone #61 near #59 distance 5.86 |
| 68537 | | |
| 68538 | | > color zone #61 near #59 distance 5.55 |
| 68539 | | |
| 68540 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 68541 | | > paper/Chimera sessions/20240806_COPI_leaf_AF3_for_figs_v2.cxs" |
| 68542 | | |
| 68543 | | ——— End of log from Tue Aug 6 15:17:45 2024 ——— |
| 68544 | | |
| 68545 | | opened ChimeraX session |
| 68546 | | |
| 68547 | | > hide #!61 models |
| 68548 | | |
| 68549 | | > show #!61 models |
| 68550 | | |
| 68551 | | > hide #!59 models |
| 68552 | | |
| 68553 | | > show #!59 models |
| 68554 | | |
| 68555 | | > hide #!61 models |
| 68556 | | |
| 68557 | | > show #!58 models |
| 68558 | | |
| 68559 | | > hide #!58 models |
| 68560 | | |
| 68561 | | > show #!58 models |
| 68562 | | |
| 68563 | | > show #!61 models |
| 68564 | | |
| 68565 | | > hide #!61 models |
| 68566 | | |
| 68567 | | > show #!61 models |
| 68568 | | |
| 68569 | | > hide #!61 models |
| 68570 | | |
| 68571 | | > show #!56 models |
| 68572 | | |
| 68573 | | > hide #!56 models |
| 68574 | | |
| 68575 | | > show #!57 models |
| 68576 | | |
| 68577 | | > close #61 |
| 68578 | | |
| 68579 | | > combine #1 |
| 68580 | | |
| 68581 | | No structures specified |
| 68582 | | |
| 68583 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 68584 | | > dataset/Structure files/relion_locres_filtered_20240326_GT.mrc" |
| 68585 | | |
| 68586 | | Opened relion_locres_filtered_20240326_GT.mrc as #60, grid size 292,292,292, |
| 68587 | | pixel 1.71, shown at level 0.00473, step 2, values float32 |
| 68588 | | |
| 68589 | | > select add #60 |
| 68590 | | |
| 68591 | | 2 models selected |
| 68592 | | |
| 68593 | | > ui mousemode right "translate selected models" |
| 68594 | | |
| 68595 | | > view matrix models #60,1,0,0,94.293,0,1,0,59.794,0,0,1,17.203 |
| 68596 | | |
| 68597 | | > view matrix models #60,1,0,0,87.011,0,1,0,46.591,0,0,1,75.712 |
| 68598 | | |
| 68599 | | > view matrix models #60,1,0,0,62.484,0,1,0,72.607,0,0,1,72.836 |
| 68600 | | |
| 68601 | | > ui tool show "Fit in Map" |
| 68602 | | |
| 68603 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 68604 | | QTBUG which explains how to reproduce. |
| 68605 | | |
| 68606 | | [Repeated 1 time(s)] |
| 68607 | | |
| 68608 | | > fitmap #60 inMap #1 |
| 68609 | | |
| 68610 | | Fit map relion_locres_filtered_20240326_GT.mrc in map |
| 68611 | | relion_locres_filtered_20240326_GT.mrc using 30918 points |
| 68612 | | correlation = 1, correlation about mean = 1, overlap = 3.365 |
| 68613 | | steps = 92, shift = 5.1, angle = 0.971 degrees |
| 68614 | | |
| 68615 | | Position of relion_locres_filtered_20240326_GT.mrc (#60) relative to |
| 68616 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 68617 | | Matrix rotation and translation |
| 68618 | | 0.99999999 0.00004012 -0.00014956 0.04461249 |
| 68619 | | -0.00004012 1.00000000 0.00001176 -0.00027160 |
| 68620 | | 0.00014956 -0.00001176 0.99999999 -0.04335390 |
| 68621 | | Axis -0.07572659 -0.96307673 -0.25835770 |
| 68622 | | Axis point 275.92599265 0.00000000 302.35452588 |
| 68623 | | Rotation angle (degrees) 0.00889794 |
| 68624 | | Shift along axis 0.00808403 |
| 68625 | | |
| 68626 | | |
| 68627 | | > select subtract #60 |
| 68628 | | |
| 68629 | | Nothing selected |
| 68630 | | |
| 68631 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 68632 | | QTBUG which explains how to reproduce. |
| 68633 | | |
| 68634 | | > volume #60 step 1 |
| 68635 | | |
| 68636 | | > volume #60 level 0.005 |
| 68637 | | |
| 68638 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 68639 | | > paper/Chimera sessions/20240808_COPI_leaf_AF3_for_figs_v5.cxs" |
| 68640 | | |
| 68641 | | > color #24 #98fcffff |
| 68642 | | |
| 68643 | | > color #24 label_red |
| 68644 | | |
| 68645 | | Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero', |
| 68646 | | 'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', |
| 68647 | | 'fromcartoons', 'fromribbons', or 'random' or a keyword |
| 68648 | | |
| 68649 | | > color #24 alphav1 |
| 68650 | | |
| 68651 | | Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero', |
| 68652 | | 'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', |
| 68653 | | 'fromcartoons', 'fromribbons', or 'random' or a keyword |
| 68654 | | |
| 68655 | | > color name label_red #E32723 |
| 68656 | | |
| 68657 | | Color 'label_red' is opaque: rgb(89%, 15.3%, 13.7%) hex: #e32723 |
| 68658 | | |
| 68659 | | |
| 68660 | | |
| 68661 | | > color name label_purple #6C4896 |
| 68662 | | |
| 68663 | | Color 'label_purple' is opaque: rgb(42.4%, 28.2%, 58.8%) hex: #6c4896 |
| 68664 | | |
| 68665 | | |
| 68666 | | |
| 68667 | | > color name arf1v2 #EB70A8 |
| 68668 | | |
| 68669 | | Color 'arf1v2' is opaque: rgb(92.2%, 43.9%, 65.9%) hex: #eb70a8 |
| 68670 | | |
| 68671 | | |
| 68672 | | |
| 68673 | | > color name alphav1 #5786F5 |
| 68674 | | |
| 68675 | | Color 'alphav1' is opaque: rgb(34.1%, 52.5%, 96.1%) hex: #5786f5 |
| 68676 | | |
| 68677 | | |
| 68678 | | |
| 68679 | | > color name alphav2 #2A4B9B |
| 68680 | | |
| 68681 | | Color 'alphav2' is opaque: rgb(16.5%, 29.4%, 60.8%) hex: #2a4b9b |
| 68682 | | |
| 68683 | | |
| 68684 | | |
| 68685 | | > color name betapv1 #53EAF3 |
| 68686 | | |
| 68687 | | Color 'betapv1' is opaque: rgb(32.5%, 91.8%, 95.3%) hex: #53eaf3 |
| 68688 | | |
| 68689 | | |
| 68690 | | |
| 68691 | | > color name betapv2 #759ED9 |
| 68692 | | |
| 68693 | | Color 'betapv2' is opaque: rgb(45.9%, 62%, 85.1%) hex: #759ed9 |
| 68694 | | |
| 68695 | | |
| 68696 | | |
| 68697 | | > color name betav1 #37863D |
| 68698 | | |
| 68699 | | Color 'betav1' is opaque: rgb(21.6%, 52.5%, 23.9%) hex: #37863d |
| 68700 | | |
| 68701 | | |
| 68702 | | |
| 68703 | | > color name betav2 #207B35 |
| 68704 | | |
| 68705 | | Color 'betav2' is opaque: rgb(12.5%, 48.2%, 20.8%) hex: #207b35 |
| 68706 | | |
| 68707 | | |
| 68708 | | |
| 68709 | | > color name deltav1 #CE8041 |
| 68710 | | |
| 68711 | | Color 'deltav1' is opaque: rgb(80.8%, 50.2%, 25.5%) hex: #ce8041 |
| 68712 | | |
| 68713 | | |
| 68714 | | |
| 68715 | | > color name deltav2 #E97408 |
| 68716 | | |
| 68717 | | Color 'deltav2' is opaque: rgb(91.4%, 45.5%, 3.14%) hex: #e97408 |
| 68718 | | |
| 68719 | | |
| 68720 | | |
| 68721 | | > color name epsilonv1 #F06969 |
| 68722 | | |
| 68723 | | Color 'epsilonv1' is opaque: rgb(94.1%, 41.2%, 41.2%) hex: #f06969 |
| 68724 | | |
| 68725 | | |
| 68726 | | |
| 68727 | | > color name gammav1 #2AFF3C |
| 68728 | | |
| 68729 | | Color 'gammav1' is opaque: rgb(16.5%, 100%, 23.5%) hex: #2aff3c |
| 68730 | | |
| 68731 | | |
| 68732 | | |
| 68733 | | > color name gammav2 #61B230 |
| 68734 | | |
| 68735 | | Color 'gammav2' is opaque: rgb(38%, 69.8%, 18.8%) hex: #61b230 |
| 68736 | | |
| 68737 | | |
| 68738 | | |
| 68739 | | > color name zetav1 #E0C819 |
| 68740 | | |
| 68741 | | Color 'zetav1' is opaque: rgb(87.8%, 78.4%, 9.8%) hex: #e0c819 |
| 68742 | | |
| 68743 | | |
| 68744 | | |
| 68745 | | > color name zetav2 #EFE30C |
| 68746 | | |
| 68747 | | Color 'zetav2' is opaque: rgb(93.7%, 89%, 4.71%) hex: #efe30c |
| 68748 | | |
| 68749 | | |
| 68750 | | |
| 68751 | | > color name arf1v1 #FF76AF |
| 68752 | | |
| 68753 | | Color 'arf1v1' is opaque: rgb(100%, 46.3%, 68.6%) hex: #ff76af |
| 68754 | | |
| 68755 | | |
| 68756 | | |
| 68757 | | > color #24 label_red |
| 68758 | | |
| 68759 | | > color #60 white models |
| 68760 | | |
| 68761 | | > color #56 white models |
| 68762 | | |
| 68763 | | > hide #!57 models |
| 68764 | | |
| 68765 | | > hide #!58 models |
| 68766 | | |
| 68767 | | > hide #!59 models |
| 68768 | | |
| 68769 | | > color #38 alphav1 |
| 68770 | | |
| 68771 | | > show #38 models |
| 68772 | | |
| 68773 | | > hide #!60 models |
| 68774 | | |
| 68775 | | > show #39 models |
| 68776 | | |
| 68777 | | > show #41 models |
| 68778 | | |
| 68779 | | > show #42 models |
| 68780 | | |
| 68781 | | > show #!43 models |
| 68782 | | |
| 68783 | | > show #!44 models |
| 68784 | | |
| 68785 | | > show #!45 models |
| 68786 | | |
| 68787 | | > show #!46 models |
| 68788 | | |
| 68789 | | > show #48 models |
| 68790 | | |
| 68791 | | > show #47 models |
| 68792 | | |
| 68793 | | > show #!49 models |
| 68794 | | |
| 68795 | | > show #50 models |
| 68796 | | |
| 68797 | | > show #51 models |
| 68798 | | |
| 68799 | | > show #52 models |
| 68800 | | |
| 68801 | | > show #53 models |
| 68802 | | |
| 68803 | | > show #!54 models |
| 68804 | | |
| 68805 | | > color #39 alphav1 |
| 68806 | | |
| 68807 | | > color #41 betapv1 |
| 68808 | | |
| 68809 | | > color #42 betapv1 |
| 68810 | | |
| 68811 | | > color #43 betav1 |
| 68812 | | |
| 68813 | | > color #44 betav1 |
| 68814 | | |
| 68815 | | > color #45 betav1 |
| 68816 | | |
| 68817 | | > color #46 deltav1 |
| 68818 | | |
| 68819 | | > color #47 gammav1 |
| 68820 | | |
| 68821 | | > color #47 gammav2 |
| 68822 | | |
| 68823 | | > color #48 gammav2 |
| 68824 | | |
| 68825 | | > color #49 gammav2 |
| 68826 | | |
| 68827 | | > color #43 betav2 |
| 68828 | | |
| 68829 | | > color #44 betav2 |
| 68830 | | |
| 68831 | | > color #45 betav2 |
| 68832 | | |
| 68833 | | > color #50 zetav1 |
| 68834 | | |
| 68835 | | > color #51 arf1v1 |
| 68836 | | |
| 68837 | | > color #52 arf1v1 |
| 68838 | | |
| 68839 | | > color #53 arf1v1 |
| 68840 | | |
| 68841 | | > color #47 #acacacff |
| 68842 | | |
| 68843 | | > color #47 gammav2 |
| 68844 | | |
| 68845 | | > color #47 #61db30ff |
| 68846 | | |
| 68847 | | > color #47 #61c730ff |
| 68848 | | |
| 68849 | | > color #47 #58c730ff |
| 68850 | | |
| 68851 | | > color #47 #58de30ff |
| 68852 | | |
| 68853 | | > color name gammav3 #58DE30 |
| 68854 | | |
| 68855 | | Color 'gammav3' is opaque: rgb(34.5%, 87.1%, 18.8%) hex: #58de30 |
| 68856 | | |
| 68857 | | |
| 68858 | | |
| 68859 | | > color #48 gammav3 |
| 68860 | | |
| 68861 | | > color #49 gammav3 |
| 68862 | | |
| 68863 | | > color #51 arf1v2 |
| 68864 | | |
| 68865 | | > color #52 arf1v2 |
| 68866 | | |
| 68867 | | > color #53 arf1v2 |
| 68868 | | |
| 68869 | | > color #38 alphav1 |
| 68870 | | |
| 68871 | | > color #38 alphav2 |
| 68872 | | |
| 68873 | | > color #39 alphav2 |
| 68874 | | |
| 68875 | | > color #54 label_purple |
| 68876 | | |
| 68877 | | > color #55 label_purple |
| 68878 | | |
| 68879 | | > show #55 models |
| 68880 | | |
| 68881 | | > color #11 #801effff |
| 68882 | | |
| 68883 | | > color #11 #801ed1ff |
| 68884 | | |
| 68885 | | > color name label_purplev2 #7F1ED1 |
| 68886 | | |
| 68887 | | Color 'label_purplev2' is opaque: rgb(49.8%, 11.8%, 82%) hex: #7f1ed1 |
| 68888 | | |
| 68889 | | |
| 68890 | | |
| 68891 | | > color #54 label_purplev2 |
| 68892 | | |
| 68893 | | > color #55 label_purplev2 |
| 68894 | | |
| 68895 | | > combine #38 #39 #40 #41 #42 #43 #44 #45 #46 #47 #48 #49 #50 #51 #52 #53 #54 |
| 68896 | | > #55 |
| 68897 | | |
| 68898 | | Remapping chain ID 'D' in 20240711_copi_golph3_alpha_I592-G900.cif #39 to 'E' |
| 68899 | | Remapping chain ID 'D' in fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif |
| 68900 | | #40 to 'I' |
| 68901 | | Remapping chain ID 'E' in fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif |
| 68902 | | #40 to 'J' |
| 68903 | | Remapping chain ID 'F' in 20240711_copi_golph3_betaprime_M1-S586.cif #41 to |
| 68904 | | 'K' |
| 68905 | | Remapping chain ID 'F' in 20240711_copi_golph3_betaprime_L587-D905.cif #42 to |
| 68906 | | 'L' |
| 68907 | | Remapping chain ID 'E' in 20240711_copi_golph3_beta_S711-L953.cif #43 to 'M' |
| 68908 | | Remapping chain ID 'E' in 20240711_copi_golph3_beta_H311-E659.cif #44 to 'N' |
| 68909 | | Remapping chain ID 'E' in 20240711_copi_golph3_beta_M1-H311_K660-A710.cif #45 |
| 68910 | | to 'O' |
| 68911 | | Remapping chain ID 'G' in 20240711_copi_golph3_delta_M1-S273.cif #46 to 'P' |
| 68912 | | Remapping chain ID 'H' in 20240711_copi_golph3_gamma1_K300-F448.cif #47 to 'Q' |
| 68913 | | Remapping chain ID 'H' in 20240711_copi_golph3_gamma1_M1-P299.cif #48 to 'R' |
| 68914 | | Remapping chain ID 'H' in 20240711_copi_golph3_gammm1_T449-R609.cif #49 to 'S' |
| 68915 | | Remapping chain ID 'I' in 20240711_copi_golph3_zeta1.cif #50 to 'T' |
| 68916 | | Remapping chain ID 'B' in 20240711_copi_golph3_beta_Arf1_.cif #51 to 'U' |
| 68917 | | Remapping chain ID 'C' in 20240711_copi_golph3_gamma_Arf1_.cif #52 to 'V' |
| 68918 | | Remapping chain ID 'B' in 20240711_copi_golph3_third_Arf1.cif #53 to 'W' |
| 68919 | | Remapping chain ID 'A' in 20240711_copi_golph3_golph3_M1-.cif #54 to 'X' |
| 68920 | | Remapping chain ID 'A' in 20240711_copi_golph3_golph3_.cif #55 to 'Y' |
| 68921 | | |
| 68922 | | > hide #38 models |
| 68923 | | |
| 68924 | | > hide #39 models |
| 68925 | | |
| 68926 | | > hide #41 models |
| 68927 | | |
| 68928 | | > hide #42 models |
| 68929 | | |
| 68930 | | > hide #!43 models |
| 68931 | | |
| 68932 | | > hide #!44 models |
| 68933 | | |
| 68934 | | > hide #!45 models |
| 68935 | | |
| 68936 | | > hide #!46 models |
| 68937 | | |
| 68938 | | > hide #47 models |
| 68939 | | |
| 68940 | | > hide #48 models |
| 68941 | | |
| 68942 | | > hide #!49 models |
| 68943 | | |
| 68944 | | > hide #50 models |
| 68945 | | |
| 68946 | | > hide #51 models |
| 68947 | | |
| 68948 | | > hide #52 models |
| 68949 | | |
| 68950 | | > hide #53 models |
| 68951 | | |
| 68952 | | > hide #!54 models |
| 68953 | | |
| 68954 | | > hide #55 models |
| 68955 | | |
| 68956 | | > rename #59 combined_model_COPI_GOLPH3_colorset1 |
| 68957 | | |
| 68958 | | > rename #58 relion_locres_filtered_20240326_GT_colorset1.mrc |
| 68959 | | |
| 68960 | | > ui tool show "Color Zone" |
| 68961 | | |
| 68962 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 68963 | | QTBUG which explains how to reproduce. |
| 68964 | | |
| 68965 | | > show #!60 models |
| 68966 | | |
| 68967 | | > color zone #60 near #61 distance 10.26 |
| 68968 | | |
| 68969 | | > color zone #60 near #61 distance 10.73 |
| 68970 | | |
| 68971 | | > color zone #60 near #61 distance 4.91 |
| 68972 | | |
| 68973 | | > volume #60 level 0.01316 |
| 68974 | | |
| 68975 | | > close #61 |
| 68976 | | |
| 68977 | | > combine #38 #39 #41 #42 #43 #44 #45 #46 #47 #48 #49 #50 #51 #52 #53 #54 #55 |
| 68978 | | |
| 68979 | | Remapping chain ID 'D' in 20240711_copi_golph3_alpha_I592-G900.cif #39 to 'E' |
| 68980 | | Remapping chain ID 'F' in 20240711_copi_golph3_betaprime_L587-D905.cif #42 to |
| 68981 | | 'G' |
| 68982 | | Remapping chain ID 'E' in 20240711_copi_golph3_beta_S711-L953.cif #43 to 'H' |
| 68983 | | Remapping chain ID 'E' in 20240711_copi_golph3_beta_H311-E659.cif #44 to 'I' |
| 68984 | | Remapping chain ID 'E' in 20240711_copi_golph3_beta_M1-H311_K660-A710.cif #45 |
| 68985 | | to 'J' |
| 68986 | | Remapping chain ID 'G' in 20240711_copi_golph3_delta_M1-S273.cif #46 to 'K' |
| 68987 | | Remapping chain ID 'H' in 20240711_copi_golph3_gamma1_K300-F448.cif #47 to 'L' |
| 68988 | | Remapping chain ID 'H' in 20240711_copi_golph3_gamma1_M1-P299.cif #48 to 'M' |
| 68989 | | Remapping chain ID 'H' in 20240711_copi_golph3_gammm1_T449-R609.cif #49 to 'N' |
| 68990 | | Remapping chain ID 'I' in 20240711_copi_golph3_zeta1.cif #50 to 'O' |
| 68991 | | Remapping chain ID 'B' in 20240711_copi_golph3_third_Arf1.cif #53 to 'P' |
| 68992 | | Remapping chain ID 'A' in 20240711_copi_golph3_golph3_.cif #55 to 'Q' |
| 68993 | | |
| 68994 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 68995 | | QTBUG which explains how to reproduce. |
| 68996 | | |
| 68997 | | > color zone #60 near #61 distance 4.91 |
| 68998 | | |
| 68999 | | > hide #!60 models |
| 69000 | | |
| 69001 | | > ui mousemode right select |
| 69002 | | |
| 69003 | | > select #61/K:255 |
| 69004 | | |
| 69005 | | 4 atoms, 3 bonds, 1 residue, 1 model selected |
| 69006 | | |
| 69007 | | > delete sel |
| 69008 | | |
| 69009 | | > select #61/K:254 |
| 69010 | | |
| 69011 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 69012 | | |
| 69013 | | > delete sel |
| 69014 | | |
| 69015 | | > select #61/K:252 |
| 69016 | | |
| 69017 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 69018 | | |
| 69019 | | > select #61/K:253 |
| 69020 | | |
| 69021 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 69022 | | |
| 69023 | | > delete sel |
| 69024 | | |
| 69025 | | > select clear |
| 69026 | | |
| 69027 | | > select #61/K:252 |
| 69028 | | |
| 69029 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 69030 | | |
| 69031 | | > delete sel |
| 69032 | | |
| 69033 | | > select #61/K:251 |
| 69034 | | |
| 69035 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 69036 | | |
| 69037 | | > delete sel |
| 69038 | | |
| 69039 | | > select #61/K:250 |
| 69040 | | |
| 69041 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 69042 | | |
| 69043 | | > delete sel |
| 69044 | | |
| 69045 | | > select #61/K:249 |
| 69046 | | |
| 69047 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 69048 | | |
| 69049 | | > delete sel |
| 69050 | | |
| 69051 | | > select #61/K:248 |
| 69052 | | |
| 69053 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 69054 | | |
| 69055 | | > delete sel |
| 69056 | | |
| 69057 | | > show #!60 models |
| 69058 | | |
| 69059 | | > color single #60 |
| 69060 | | |
| 69061 | | > color zone #60 near #61 distance 4.91 |
| 69062 | | |
| 69063 | | > volume #60 level 0.008979 |
| 69064 | | |
| 69065 | | > color zone #60 near #61 distance 4.85 |
| 69066 | | |
| 69067 | | > color zone #60 near #61 distance 6.64 |
| 69068 | | |
| 69069 | | > color #1 #ebebebff models |
| 69070 | | |
| 69071 | | > color #1 #d6d6d6ff models |
| 69072 | | |
| 69073 | | > volume #60 level 0.008 |
| 69074 | | |
| 69075 | | > hide #!61 models |
| 69076 | | |
| 69077 | | > rename #61 combine_model_COPI_GOLPH3_colorset2 |
| 69078 | | |
| 69079 | | > rename #60 relion_locres_filtered_20240326_GT_colorset2.mrc |
| 69080 | | |
| 69081 | | > save /Users/becca/Desktop/image1.png supersample 3 |
| 69082 | | |
| 69083 | | > color #1 #d6d6d6cc models |
| 69084 | | |
| 69085 | | > color #1 #d6d6d69a models |
| 69086 | | |
| 69087 | | > color #1 #d6d6d699 models |
| 69088 | | |
| 69089 | | > show #!1 models |
| 69090 | | |
| 69091 | | > hide #!60 models |
| 69092 | | |
| 69093 | | > show #!61 models |
| 69094 | | |
| 69095 | | > save /Users/becca/Desktop/image2.png supersample 3 |
| 69096 | | |
| 69097 | | > save /Users/becca/Desktop/image3.png supersample 3 |
| 69098 | | |
| 69099 | | > hide #!61 models |
| 69100 | | |
| 69101 | | > show #!60 models |
| 69102 | | |
| 69103 | | > hide #!1 models |
| 69104 | | |
| 69105 | | > save /Users/becca/Desktop/image4.png supersample 3 |
| 69106 | | |
| 69107 | | > color #60 #ffffffb9 models |
| 69108 | | |
| 69109 | | > color #60 #ffffffb7 models |
| 69110 | | |
| 69111 | | > color zone #60 near #61 distance 6.64 |
| 69112 | | |
| 69113 | | > color #60 #ffffffb8 models |
| 69114 | | |
| 69115 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 69116 | | > paper/Chimera sessions/20240808_COPI_leaf_AF3_for_figs_v6.cxs" |
| 69117 | | |
| 69118 | | > hide #!60 models |
| 69119 | | |
| 69120 | | > show #!61 models |
| 69121 | | |
| 69122 | | > color #61/chain Q label_purple |
| 69123 | | |
| 69124 | | Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero', |
| 69125 | | 'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', |
| 69126 | | 'fromcartoons', 'fromribbons', or 'random' or a keyword |
| 69127 | | |
| 69128 | | > color #61/chainQ label_purple |
| 69129 | | |
| 69130 | | > color #61/chainP label_purple |
| 69131 | | |
| 69132 | | > color #61/chainP blue |
| 69133 | | |
| 69134 | | > color #61/P blue |
| 69135 | | |
| 69136 | | > undo |
| 69137 | | |
| 69138 | | > color #61/Q label_purple |
| 69139 | | |
| 69140 | | > color #61/R label_purple |
| 69141 | | |
| 69142 | | > color #61/p label_purple |
| 69143 | | |
| 69144 | | > undo |
| 69145 | | |
| 69146 | | > color #61/o label_purple |
| 69147 | | |
| 69148 | | > undo |
| 69149 | | |
| 69150 | | > color #61/a label_purple |
| 69151 | | |
| 69152 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 69153 | | > dataset/Structure files/relion_locres_filtered_20240326_GT.mrc" |
| 69154 | | |
| 69155 | | Opened relion_locres_filtered_20240326_GT_colorset2.mrc as #62, grid size |
| 69156 | | 292,292,292, pixel 1.71, shown at level 0.00473, step 2, values float32 |
| 69157 | | |
| 69158 | | > color #62 white models |
| 69159 | | |
| 69160 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 69161 | | QTBUG which explains how to reproduce. |
| 69162 | | |
| 69163 | | > volume #62 step 1 |
| 69164 | | |
| 69165 | | > volume #62 level 0.008 |
| 69166 | | |
| 69167 | | > select add #62 |
| 69168 | | |
| 69169 | | 2 models selected |
| 69170 | | |
| 69171 | | > show #!60 models |
| 69172 | | |
| 69173 | | > ui mousemode right "translate selected models" |
| 69174 | | |
| 69175 | | > view matrix models #62,1,0,0,82.731,0,1,0,56.524,0,0,1,33.509 |
| 69176 | | |
| 69177 | | > view matrix models #62,1,0,0,79.094,0,1,0,68.742,0,0,1,76.061 |
| 69178 | | |
| 69179 | | > view matrix models #62,1,0,0,75.329,0,1,0,66.28,0,0,1,82.958 |
| 69180 | | |
| 69181 | | > view matrix models #62,1,0,0,62.569,0,1,0,73.325,0,0,1,77.393 |
| 69182 | | |
| 69183 | | > fitmap #62 inMap #1 |
| 69184 | | |
| 69185 | | Fit map relion_locres_filtered_20240326_GT_colorset2.mrc in map |
| 69186 | | relion_locres_filtered_20240326_GT.mrc using 67258 points |
| 69187 | | correlation = 1, correlation about mean = 1, overlap = 21.45 |
| 69188 | | steps = 52, shift = 2.4, angle = 0.977 degrees |
| 69189 | | |
| 69190 | | Position of relion_locres_filtered_20240326_GT_colorset2.mrc (#62) relative to |
| 69191 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 69192 | | Matrix rotation and translation |
| 69193 | | 1.00000000 -0.00001875 -0.00002627 0.01893074 |
| 69194 | | 0.00001875 1.00000000 -0.00002003 -0.00224731 |
| 69195 | | 0.00002628 0.00002003 1.00000000 0.00132667 |
| 69196 | | Axis 0.52718994 -0.69167549 0.49361502 |
| 69197 | | Axis point 178.51353821 0.00000000 475.91658522 |
| 69198 | | Rotation angle (degrees) 0.00217651 |
| 69199 | | Shift along axis 0.01218937 |
| 69200 | | |
| 69201 | | |
| 69202 | | > select subtract #62 |
| 69203 | | |
| 69204 | | Nothing selected |
| 69205 | | |
| 69206 | | > color zone #62 near #61 distance 10.26 |
| 69207 | | |
| 69208 | | > hide #!60 models |
| 69209 | | |
| 69210 | | > hide #!61 models |
| 69211 | | |
| 69212 | | > surface dust #62 size 17.1 |
| 69213 | | |
| 69214 | | > show #!60 models |
| 69215 | | |
| 69216 | | > surface dust #60 size 17.1 |
| 69217 | | |
| 69218 | | > surface dust #62 size 17.1 |
| 69219 | | |
| 69220 | | > hide #!62 models |
| 69221 | | |
| 69222 | | > hide #!60 models |
| 69223 | | |
| 69224 | | > show #!62 models |
| 69225 | | |
| 69226 | | > save /Users/becca/Desktop/image5.png supersample 3 |
| 69227 | | |
| 69228 | | > hide #!62 models |
| 69229 | | |
| 69230 | | > show #!61 models |
| 69231 | | |
| 69232 | | > show #!1 models |
| 69233 | | |
| 69234 | | > save /Users/becca/Desktop/image6.png supersample 3 |
| 69235 | | |
| 69236 | | > hide #!1 models |
| 69237 | | |
| 69238 | | > show #!1 models |
| 69239 | | |
| 69240 | | > save /Users/becca/Desktop/image7.png supersample 3 |
| 69241 | | |
| 69242 | | > hide #!1 models |
| 69243 | | |
| 69244 | | > hide #!61 models |
| 69245 | | |
| 69246 | | > show #!62 models |
| 69247 | | |
| 69248 | | > save /Users/becca/Desktop/image8.png supersample 3 |
| 69249 | | |
| 69250 | | > save /Users/becca/Desktop/image9.png supersample 3 |
| 69251 | | |
| 69252 | | > hide #!62 models |
| 69253 | | |
| 69254 | | > show #!61 models |
| 69255 | | |
| 69256 | | > show #!1 models |
| 69257 | | |
| 69258 | | > save /Users/becca/Desktop/image10.png supersample 3 |
| 69259 | | |
| 69260 | | > hide #!1 models |
| 69261 | | |
| 69262 | | > color #61/b gammav2 |
| 69263 | | |
| 69264 | | > color #61/c gammav2 |
| 69265 | | |
| 69266 | | > color #61/d gammav2 |
| 69267 | | |
| 69268 | | > color #61/e gammav2 |
| 69269 | | |
| 69270 | | > color #61/f gammav2 |
| 69271 | | |
| 69272 | | > color #61/g gammav2 |
| 69273 | | |
| 69274 | | > color #61/f betapv2 |
| 69275 | | |
| 69276 | | > color #61/g betapv2 |
| 69277 | | |
| 69278 | | > color #61/h gammav2 |
| 69279 | | |
| 69280 | | > color #61/i gammav2 |
| 69281 | | |
| 69282 | | > color #61/j gammav2 |
| 69283 | | |
| 69284 | | > color #61/k gammav2 |
| 69285 | | |
| 69286 | | > color #61/l gammav2 |
| 69287 | | |
| 69288 | | > color #61/m gammav2 |
| 69289 | | |
| 69290 | | > color #61/n gammav2 |
| 69291 | | |
| 69292 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 69293 | | > dataset/Structure files/relion_locres_filtered_20240326_GT.mrc" |
| 69294 | | |
| 69295 | | Opened relion_locres_filtered_20240326_GT_colorset2.mrc as #63, grid size |
| 69296 | | 292,292,292, pixel 1.71, shown at level 0.00473, step 2, values float32 |
| 69297 | | |
| 69298 | | > color #63 white models |
| 69299 | | |
| 69300 | | > select add #63 |
| 69301 | | |
| 69302 | | 2 models selected |
| 69303 | | |
| 69304 | | > view matrix models #63,1,0,0,75.253,0,1,0,55.49,0,0,1,11.12 |
| 69305 | | |
| 69306 | | > view matrix models #63,1,0,0,90.631,0,1,0,59.745,0,0,1,63.045 |
| 69307 | | |
| 69308 | | > view matrix models #63,1,0,0,68.515,0,1,0,55.118,0,0,1,78.162 |
| 69309 | | |
| 69310 | | > view matrix models #63,1,0,0,66.634,0,1,0,67.567,0,0,1,67.24 |
| 69311 | | |
| 69312 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 69313 | | QTBUG which explains how to reproduce. |
| 69314 | | |
| 69315 | | > volume #63 step 1 |
| 69316 | | |
| 69317 | | > volume #63 level 0.008 |
| 69318 | | |
| 69319 | | > fitmap #63 inMap #1 |
| 69320 | | |
| 69321 | | Fit map relion_locres_filtered_20240326_GT_colorset2.mrc in map |
| 69322 | | relion_locres_filtered_20240326_GT.mrc using 67258 points |
| 69323 | | correlation = 0.5415, correlation about mean = 0.1363, overlap = 7.061 |
| 69324 | | steps = 116, shift = 7.07, angle = 5.74 degrees |
| 69325 | | |
| 69326 | | Position of relion_locres_filtered_20240326_GT_colorset2.mrc (#63) relative to |
| 69327 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 69328 | | Matrix rotation and translation |
| 69329 | | 0.99362306 0.08167924 -0.07772850 -0.92565197 |
| 69330 | | -0.08058175 0.99660031 0.01715800 10.92285128 |
| 69331 | | 0.07886570 -0.01078508 0.99682691 -23.17442071 |
| 69332 | | Axis -0.12297538 -0.68915930 -0.71409839 |
| 69333 | | Axis point 213.07603457 14.21459699 0.00000000 |
| 69334 | | Rotation angle (degrees) 6.52360209 |
| 69335 | | Shift along axis 9.13506435 |
| 69336 | | |
| 69337 | | |
| 69338 | | > show #!1 models |
| 69339 | | |
| 69340 | | > view matrix models |
| 69341 | | > #63,0.99499,0.069158,-0.072244,60.427,-0.06889,0.99761,0.0061881,84.855,0.072498,-0.0011802,0.99737,52.494 |
| 69342 | | |
| 69343 | | > view matrix models |
| 69344 | | > #63,0.99499,0.069158,-0.072244,61.276,-0.06889,0.99761,0.0061881,84.838,0.072498,-0.0011802,0.99737,55.066 |
| 69345 | | |
| 69346 | | > show #!60 models |
| 69347 | | |
| 69348 | | > hide #!60 models |
| 69349 | | |
| 69350 | | > show #!60 models |
| 69351 | | |
| 69352 | | > hide #!60 models |
| 69353 | | |
| 69354 | | > show #!60 models |
| 69355 | | |
| 69356 | | > hide #!60 models |
| 69357 | | |
| 69358 | | > hide #!61 models |
| 69359 | | |
| 69360 | | > fitmap #63 inMap #1 |
| 69361 | | |
| 69362 | | Fit map relion_locres_filtered_20240326_GT_colorset2.mrc in map |
| 69363 | | relion_locres_filtered_20240326_GT.mrc using 67258 points |
| 69364 | | correlation = 0.5415, correlation about mean = 0.1362, overlap = 7.06 |
| 69365 | | steps = 64, shift = 3.65, angle = 0.0144 degrees |
| 69366 | | |
| 69367 | | Position of relion_locres_filtered_20240326_GT_colorset2.mrc (#63) relative to |
| 69368 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 69369 | | Matrix rotation and translation |
| 69370 | | 0.99360075 0.08181777 -0.07786785 -0.90541724 |
| 69371 | | -0.08073064 0.99659074 0.01701358 11.00212074 |
| 69372 | | 0.07899439 -0.01061838 0.99681851 -23.23121300 |
| 69373 | | Axis -0.12141808 -0.68927119 -0.71425687 |
| 69374 | | Axis point 213.54257878 14.23471065 0.00000000 |
| 69375 | | Rotation angle (degrees) 6.53375156 |
| 69376 | | Shift along axis 9.11954274 |
| 69377 | | |
| 69378 | | |
| 69379 | | > view matrix models |
| 69380 | | > #63,0.99497,0.069297,-0.072381,72.42,-0.069041,0.9976,0.006042,87.797,0.072626,-0.0010144,0.99736,54.674 |
| 69381 | | |
| 69382 | | > fitmap #63 inMap #1 |
| 69383 | | |
| 69384 | | Fit map relion_locres_filtered_20240326_GT_colorset2.mrc in map |
| 69385 | | relion_locres_filtered_20240326_GT.mrc using 67258 points |
| 69386 | | correlation = 1, correlation about mean = 1, overlap = 21.46 |
| 69387 | | steps = 152, shift = 9.34, angle = 6.54 degrees |
| 69388 | | |
| 69389 | | Position of relion_locres_filtered_20240326_GT_colorset2.mrc (#63) relative to |
| 69390 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 69391 | | Matrix rotation and translation |
| 69392 | | 1.00000000 -0.00003458 0.00000150 0.00697228 |
| 69393 | | 0.00003458 1.00000000 -0.00002441 0.00466924 |
| 69394 | | -0.00000150 0.00002441 1.00000000 -0.01150830 |
| 69395 | | Axis 0.57631042 0.03541164 0.81646330 |
| 69396 | | Axis point -140.35346721 288.49393815 0.00000000 |
| 69397 | | Rotation angle (degrees) 0.00242674 |
| 69398 | | Shift along axis -0.00521256 |
| 69399 | | |
| 69400 | | |
| 69401 | | > select subtract #63 |
| 69402 | | |
| 69403 | | Nothing selected |
| 69404 | | |
| 69405 | | > hide #!1 models |
| 69406 | | |
| 69407 | | > show #!62 models |
| 69408 | | |
| 69409 | | > hide #!62 models |
| 69410 | | |
| 69411 | | > show #!60 models |
| 69412 | | |
| 69413 | | > hide #!60 models |
| 69414 | | |
| 69415 | | > show #!61 models |
| 69416 | | |
| 69417 | | > hide #!61 models |
| 69418 | | |
| 69419 | | > color zone #63 near #61 distance 10.26 |
| 69420 | | |
| 69421 | | > color zone #63 near #61 distance 10.66 |
| 69422 | | |
| 69423 | | > color zone #63 near #61 distance 8.31 |
| 69424 | | |
| 69425 | | > surface dust #63 size 17.1 |
| 69426 | | |
| 69427 | | > show #!62 models |
| 69428 | | |
| 69429 | | > hide #!62 models |
| 69430 | | |
| 69431 | | > show #!62 models |
| 69432 | | |
| 69433 | | > hide #!62 models |
| 69434 | | |
| 69435 | | > show #!62 models |
| 69436 | | |
| 69437 | | > hide #!62 models |
| 69438 | | |
| 69439 | | > save /Users/becca/Desktop/image1.png supersample 3 |
| 69440 | | |
| 69441 | | > hide #!63 models |
| 69442 | | |
| 69443 | | > show #!61 models |
| 69444 | | |
| 69445 | | > show #!1 models |
| 69446 | | |
| 69447 | | > save /Users/becca/Desktop/image2.png supersample 3 |
| 69448 | | |
| 69449 | | > save /Users/becca/Desktop/image3.png supersample 3 |
| 69450 | | |
| 69451 | | > hide #!1 models |
| 69452 | | |
| 69453 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 69454 | | QTBUG which explains how to reproduce. |
| 69455 | | |
| 69456 | | > hide #!61 models |
| 69457 | | |
| 69458 | | > show #!63 models |
| 69459 | | |
| 69460 | | > save /Users/becca/Desktop/image4.png supersample 3 |
| 69461 | | |
| 69462 | | > save /Users/becca/Desktop/image5.png supersample 3 |
| 69463 | | |
| 69464 | | > hide #!63 models |
| 69465 | | |
| 69466 | | > show #!62 models |
| 69467 | | |
| 69468 | | > hide #!62 models |
| 69469 | | |
| 69470 | | > show #!62 models |
| 69471 | | |
| 69472 | | > hide #!62 models |
| 69473 | | |
| 69474 | | > show #!61 models |
| 69475 | | |
| 69476 | | > show #!1 models |
| 69477 | | |
| 69478 | | > save /Users/becca/Desktop/image6.png supersample 3 |
| 69479 | | |
| 69480 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and |
| 69481 | | > resources/Processing/Files from |
| 69482 | | > csparc/cryosparc_P126_J2191_class_02_final_volume.mrc" |
| 69483 | | |
| 69484 | | Opened cryosparc_P126_J2191_class_02_final_volume.mrc as #64, grid size |
| 69485 | | 180,180,180, pixel 2.42, shown at level 0.333, step 1, values float32 |
| 69486 | | |
| 69487 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and |
| 69488 | | > resources/Processing/Files from |
| 69489 | | > csparc/cryosparc_P126_J2191_class_01_final_volume.mrc" |
| 69490 | | |
| 69491 | | Opened cryosparc_P126_J2191_class_01_final_volume.mrc as #65, grid size |
| 69492 | | 180,180,180, pixel 2.42, shown at level 0.333, step 1, values float32 |
| 69493 | | |
| 69494 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and |
| 69495 | | > resources/Processing/Files from |
| 69496 | | > csparc/cryosparc_P126_J2191_class_00_final_volume.mrc" |
| 69497 | | |
| 69498 | | Opened cryosparc_P126_J2191_class_00_final_volume.mrc as #66, grid size |
| 69499 | | 180,180,180, pixel 2.42, shown at level 0.337, step 1, values float32 |
| 69500 | | |
| 69501 | | > close #66 |
| 69502 | | |
| 69503 | | > close #65 |
| 69504 | | |
| 69505 | | > close #64 |
| 69506 | | |
| 69507 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 69508 | | > paper/Chimera sessions/20240808_COPI_leaf_AF3_for_figs_v7.cxs" |
| 69509 | | |
| 69510 | | ——— End of log from Fri Aug 9 13:21:55 2024 ——— |
| 69511 | | |
| 69512 | | opened ChimeraX session |
| 69513 | | |
| 69514 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 69515 | | > paper/Chimera sessions/20240808_COPI_leaf_AF3_for_figs_v7_with_files.cxs" |
| 69516 | | > includeMaps true |
| 69517 | | |
| 69518 | | ——— End of log from Wed Sep 25 22:56:27 2024 ——— |
| 69519 | | |
| 69520 | | opened ChimeraX session |
| 69521 | | |
| 69522 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 69523 | | QTBUG which explains how to reproduce. |
| 69524 | | |
| 69525 | | > show #!62 models |
| 69526 | | |
| 69527 | | > hide #!1 models |
| 69528 | | |
| 69529 | | > hide #!61 models |
| 69530 | | |
| 69531 | | > hide #!62 models |
| 69532 | | |
| 69533 | | > show #!63 models |
| 69534 | | |
| 69535 | | > save /Users/becca/Desktop/image1.png supersample 3 |
| 69536 | | |
| 69537 | | > save /Users/becca/Desktop/image2.png supersample 3 |
| 69538 | | |
| 69539 | | > hide #!63 models |
| 69540 | | |
| 69541 | | > show #!1 models |
| 69542 | | |
| 69543 | | > show #!61 models |
| 69544 | | |
| 69545 | | > save /Users/becca/Desktop/image3.png supersample 3 |
| 69546 | | |
| 69547 | | > hide #!1 models |
| 69548 | | |
| 69549 | | > ui mousemode right select |
| 69550 | | |
| 69551 | | > select #61/O:72 |
| 69552 | | |
| 69553 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 69554 | | |
| 69555 | | > show sel atoms |
| 69556 | | |
| 69557 | | > style sel stick |
| 69558 | | |
| 69559 | | Changed 6 atom styles |
| 69560 | | |
| 69561 | | > color sel red |
| 69562 | | |
| 69563 | | > select #61/O:73 |
| 69564 | | |
| 69565 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 69566 | | |
| 69567 | | > show sel atoms |
| 69568 | | |
| 69569 | | > style sel stick |
| 69570 | | |
| 69571 | | Changed 8 atom styles |
| 69572 | | |
| 69573 | | > color sel red |
| 69574 | | |
| 69575 | | > select #61/O:74 |
| 69576 | | |
| 69577 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 69578 | | |
| 69579 | | > show sel atoms |
| 69580 | | |
| 69581 | | > style sel stick |
| 69582 | | |
| 69583 | | Changed 8 atom styles |
| 69584 | | |
| 69585 | | > color sel red |
| 69586 | | |
| 69587 | | > select #61/O:56 |
| 69588 | | |
| 69589 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 69590 | | |
| 69591 | | > select clear |
| 69592 | | |
| 69593 | | > select #61/O:21 |
| 69594 | | |
| 69595 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 69596 | | |
| 69597 | | > select #61/O:108 |
| 69598 | | |
| 69599 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 69600 | | |
| 69601 | | > select #61/C:68 |
| 69602 | | |
| 69603 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 69604 | | |
| 69605 | | > select #61/O:107 |
| 69606 | | |
| 69607 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 69608 | | |
| 69609 | | > show sel atoms |
| 69610 | | |
| 69611 | | > style sel stick |
| 69612 | | |
| 69613 | | Changed 9 atom styles |
| 69614 | | |
| 69615 | | > color sel red |
| 69616 | | |
| 69617 | | > select #61/Q:227 |
| 69618 | | |
| 69619 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 69620 | | |
| 69621 | | > show sel atoms |
| 69622 | | |
| 69623 | | > style sel stick |
| 69624 | | |
| 69625 | | Changed 8 atom styles |
| 69626 | | |
| 69627 | | > color sel red |
| 69628 | | |
| 69629 | | > select #61/Q:226 |
| 69630 | | |
| 69631 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 69632 | | |
| 69633 | | > show sel atoms |
| 69634 | | |
| 69635 | | > style sel stick |
| 69636 | | |
| 69637 | | Changed 7 atom styles |
| 69638 | | |
| 69639 | | > color sel red |
| 69640 | | |
| 69641 | | > select #61/Q:225 |
| 69642 | | |
| 69643 | | 14 atoms, 15 bonds, 1 residue, 1 model selected |
| 69644 | | |
| 69645 | | > show sel atoms |
| 69646 | | |
| 69647 | | > style sel stick |
| 69648 | | |
| 69649 | | Changed 14 atom styles |
| 69650 | | |
| 69651 | | > color sel red |
| 69652 | | |
| 69653 | | > select #61/Q:224 |
| 69654 | | |
| 69655 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 69656 | | |
| 69657 | | > show sel atoms |
| 69658 | | |
| 69659 | | > style sel stick |
| 69660 | | |
| 69661 | | Changed 9 atom styles |
| 69662 | | |
| 69663 | | > color sel red |
| 69664 | | |
| 69665 | | > select clear |
| 69666 | | |
| 69667 | | > select #61/Q:260 |
| 69668 | | |
| 69669 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 69670 | | |
| 69671 | | > select #61/Q:259 |
| 69672 | | |
| 69673 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 69674 | | |
| 69675 | | > show sel atoms |
| 69676 | | |
| 69677 | | > style sel stick |
| 69678 | | |
| 69679 | | Changed 9 atom styles |
| 69680 | | |
| 69681 | | > color sel red |
| 69682 | | |
| 69683 | | > show #!1 models |
| 69684 | | |
| 69685 | | > select clear |
| 69686 | | |
| 69687 | | > save /Users/becca/Desktop/image4.png supersample 3 |
| 69688 | | |
| 69689 | | > ui tool show "Side View" |
| 69690 | | |
| 69691 | | > save /Users/becca/Desktop/image5.png supersample 3 |
| 69692 | | |
| 69693 | | > save /Users/becca/Desktop/image6.png supersample 3 |
| 69694 | | |
| 69695 | | > save /Users/becca/Desktop/image7.png supersample 3 |
| 69696 | | |
| 69697 | | > hide #!1 models |
| 69698 | | |
| 69699 | | Drag select of 48 atoms, 66 residues, 43 bonds |
| 69700 | | |
| 69701 | | > hide sel atoms |
| 69702 | | |
| 69703 | | > select clear |
| 69704 | | |
| 69705 | | > select #61/O:74 |
| 69706 | | |
| 69707 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 69708 | | |
| 69709 | | > select #61/O:73 |
| 69710 | | |
| 69711 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 69712 | | |
| 69713 | | > select #61/O:72 |
| 69714 | | |
| 69715 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 69716 | | |
| 69717 | | > color sel zetav2 |
| 69718 | | |
| 69719 | | > select #61/O:73 |
| 69720 | | |
| 69721 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 69722 | | |
| 69723 | | > color sel zetav2 |
| 69724 | | |
| 69725 | | > select #61/O:74 |
| 69726 | | |
| 69727 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 69728 | | |
| 69729 | | > color sel zetav2 |
| 69730 | | |
| 69731 | | > select #61/O:107 |
| 69732 | | |
| 69733 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 69734 | | |
| 69735 | | > color sel zetav2 |
| 69736 | | |
| 69737 | | > select #61/F:177 |
| 69738 | | |
| 69739 | | 7 atoms, 7 bonds, 1 residue, 1 model selected |
| 69740 | | |
| 69741 | | > select #61/Q:259 |
| 69742 | | |
| 69743 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 69744 | | |
| 69745 | | > color sel golph |
| 69746 | | |
| 69747 | | Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero', |
| 69748 | | 'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', |
| 69749 | | 'fromcartoons', 'fromribbons', or 'random' or a keyword |
| 69750 | | |
| 69751 | | > color sel golphv2 |
| 69752 | | |
| 69753 | | Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero', |
| 69754 | | 'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', |
| 69755 | | 'fromcartoons', 'fromribbons', or 'random' or a keyword |
| 69756 | | |
| 69757 | | > color sel golph3v2 |
| 69758 | | |
| 69759 | | Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero', |
| 69760 | | 'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', |
| 69761 | | 'fromcartoons', 'fromribbons', or 'random' or a keyword |
| 69762 | | |
| 69763 | | > color sel golph3 |
| 69764 | | |
| 69765 | | Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero', |
| 69766 | | 'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', |
| 69767 | | 'fromcartoons', 'fromribbons', or 'random' or a keyword |
| 69768 | | |
| 69769 | | > color sel purple |
| 69770 | | |
| 69771 | | > select #61/F:315 |
| 69772 | | |
| 69773 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 69774 | | |
| 69775 | | > color sel golph3 |
| 69776 | | |
| 69777 | | Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero', |
| 69778 | | 'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', |
| 69779 | | 'fromcartoons', 'fromribbons', or 'random' or a keyword |
| 69780 | | |
| 69781 | | > color sel darkred purple |
| 69782 | | |
| 69783 | | Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels', |
| 69784 | | 'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword |
| 69785 | | |
| 69786 | | > color sel purple |
| 69787 | | |
| 69788 | | > undo |
| 69789 | | |
| 69790 | | > select clear |
| 69791 | | |
| 69792 | | [Repeated 2 time(s)] |
| 69793 | | |
| 69794 | | > select #61/Q:224 |
| 69795 | | |
| 69796 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 69797 | | |
| 69798 | | > color sel purple |
| 69799 | | |
| 69800 | | > select #61/Q:225 |
| 69801 | | |
| 69802 | | 14 atoms, 15 bonds, 1 residue, 1 model selected |
| 69803 | | |
| 69804 | | > color sel purple |
| 69805 | | |
| 69806 | | > select #61/Q:226 |
| 69807 | | |
| 69808 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 69809 | | |
| 69810 | | > color sel purple |
| 69811 | | |
| 69812 | | > select #61/Q:227 |
| 69813 | | |
| 69814 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 69815 | | |
| 69816 | | > color sel purple |
| 69817 | | |
| 69818 | | > select #61/Q:189 |
| 69819 | | |
| 69820 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 69821 | | |
| 69822 | | > show sel atoms |
| 69823 | | |
| 69824 | | > show sel cartoons |
| 69825 | | |
| 69826 | | > style sel stick |
| 69827 | | |
| 69828 | | Changed 7 atom styles |
| 69829 | | |
| 69830 | | > color sel red |
| 69831 | | |
| 69832 | | > select #61/Q:190 |
| 69833 | | |
| 69834 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 69835 | | |
| 69836 | | > select #61/Q:191 |
| 69837 | | |
| 69838 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 69839 | | |
| 69840 | | > show sel atoms |
| 69841 | | |
| 69842 | | > style sel stick |
| 69843 | | |
| 69844 | | Changed 9 atom styles |
| 69845 | | |
| 69846 | | > color sel red |
| 69847 | | |
| 69848 | | > select #61/Q:192 |
| 69849 | | |
| 69850 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 69851 | | |
| 69852 | | > select #61/Q:193 |
| 69853 | | |
| 69854 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 69855 | | |
| 69856 | | > select #61/Q:194 |
| 69857 | | |
| 69858 | | 11 atoms, 11 bonds, 1 residue, 1 model selected |
| 69859 | | |
| 69860 | | > select #61/Q:199 |
| 69861 | | |
| 69862 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 69863 | | |
| 69864 | | > select #61/Q:198 |
| 69865 | | |
| 69866 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 69867 | | |
| 69868 | | > select #61/Q:200 |
| 69869 | | |
| 69870 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 69871 | | |
| 69872 | | > show sel atoms |
| 69873 | | |
| 69874 | | > style sel stick |
| 69875 | | |
| 69876 | | Changed 7 atom styles |
| 69877 | | |
| 69878 | | > color sel red |
| 69879 | | |
| 69880 | | > select #61/D:136 |
| 69881 | | |
| 69882 | | 10 atoms, 10 bonds, 1 residue, 1 model selected |
| 69883 | | |
| 69884 | | > show sel atoms |
| 69885 | | |
| 69886 | | > show sel cartoons |
| 69887 | | |
| 69888 | | > style sel stick |
| 69889 | | |
| 69890 | | Changed 10 atom styles |
| 69891 | | |
| 69892 | | > color sel red |
| 69893 | | |
| 69894 | | > select clear |
| 69895 | | |
| 69896 | | > select #61/D:135 |
| 69897 | | |
| 69898 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 69899 | | |
| 69900 | | > show sel atoms |
| 69901 | | |
| 69902 | | > show sel cartoons |
| 69903 | | |
| 69904 | | > style sel stick |
| 69905 | | |
| 69906 | | Changed 8 atom styles |
| 69907 | | |
| 69908 | | > color sel red |
| 69909 | | |
| 69910 | | > select #61/D:137 |
| 69911 | | |
| 69912 | | 12 atoms, 12 bonds, 1 residue, 1 model selected |
| 69913 | | |
| 69914 | | > style sel stick |
| 69915 | | |
| 69916 | | Changed 12 atom styles |
| 69917 | | |
| 69918 | | > show sel atoms |
| 69919 | | |
| 69920 | | > color sel red |
| 69921 | | |
| 69922 | | > select clear |
| 69923 | | |
| 69924 | | > select #61/Q:182 |
| 69925 | | |
| 69926 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 69927 | | |
| 69928 | | > select #61/Q:183 |
| 69929 | | |
| 69930 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 69931 | | |
| 69932 | | > show sel atoms |
| 69933 | | |
| 69934 | | > style sel stick |
| 69935 | | |
| 69936 | | Changed 9 atom styles |
| 69937 | | |
| 69938 | | > color sel red |
| 69939 | | |
| 69940 | | > select clear |
| 69941 | | |
| 69942 | | > select #61/Q:179 |
| 69943 | | |
| 69944 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 69945 | | |
| 69946 | | > show sel atoms |
| 69947 | | |
| 69948 | | > style sel stick |
| 69949 | | |
| 69950 | | Changed 9 atom styles |
| 69951 | | |
| 69952 | | > color sel red |
| 69953 | | |
| 69954 | | > select #61/Q:175 |
| 69955 | | |
| 69956 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 69957 | | |
| 69958 | | > show sel atoms |
| 69959 | | |
| 69960 | | > style sel stick |
| 69961 | | |
| 69962 | | Changed 9 atom styles |
| 69963 | | |
| 69964 | | > color sel red |
| 69965 | | |
| 69966 | | > select #61/Q:56 |
| 69967 | | |
| 69968 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 69969 | | |
| 69970 | | > show sel atoms |
| 69971 | | |
| 69972 | | > style sel stick |
| 69973 | | |
| 69974 | | Changed 9 atom styles |
| 69975 | | |
| 69976 | | > color sel red |
| 69977 | | |
| 69978 | | > select #61/D:312 |
| 69979 | | |
| 69980 | | 4 atoms, 3 bonds, 1 residue, 1 model selected |
| 69981 | | |
| 69982 | | > select clear |
| 69983 | | |
| 69984 | | [Repeated 1 time(s)] |
| 69985 | | |
| 69986 | | > select #61/D:10 |
| 69987 | | |
| 69988 | | 5 atoms, 4 bonds, 1 residue, 1 model selected |
| 69989 | | |
| 69990 | | > select #61/D:312 |
| 69991 | | |
| 69992 | | 4 atoms, 3 bonds, 1 residue, 1 model selected |
| 69993 | | |
| 69994 | | > select #61/D:311 |
| 69995 | | |
| 69996 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 69997 | | |
| 69998 | | > select #61/D:290 |
| 69999 | | |
| 70000 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 70001 | | |
| 70002 | | > show sel atoms |
| 70003 | | |
| 70004 | | > style sel stick |
| 70005 | | |
| 70006 | | Changed 8 atom styles |
| 70007 | | |
| 70008 | | > color sel red |
| 70009 | | |
| 70010 | | > select #61/D:292 |
| 70011 | | |
| 70012 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 70013 | | |
| 70014 | | > show sel atoms |
| 70015 | | |
| 70016 | | > style sel stick |
| 70017 | | |
| 70018 | | Changed 8 atom styles |
| 70019 | | |
| 70020 | | > color sel red |
| 70021 | | |
| 70022 | | > show #!1 models |
| 70023 | | |
| 70024 | | > select clear |
| 70025 | | |
| 70026 | | > save /Users/becca/Desktop/image8.png supersample 3 |
| 70027 | | |
| 70028 | | > save /Users/becca/Desktop/image9.png supersample 3 |
| 70029 | | |
| 70030 | | > hide #!1 models |
| 70031 | | |
| 70032 | | > select #61/D:94 |
| 70033 | | |
| 70034 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 70035 | | |
| 70036 | | > show sel atoms |
| 70037 | | |
| 70038 | | > style sel stick |
| 70039 | | |
| 70040 | | Changed 8 atom styles |
| 70041 | | |
| 70042 | | > color sel red |
| 70043 | | |
| 70044 | | > show #!1 models |
| 70045 | | |
| 70046 | | > select clear |
| 70047 | | |
| 70048 | | > save /Users/becca/Desktop/image10.png supersample 3 |
| 70049 | | |
| 70050 | | > save /Users/becca/Desktop/image11.png supersample 3 |
| 70051 | | |
| 70052 | | > hide #!1 models |
| 70053 | | |
| 70054 | | > select #61/A:11 |
| 70055 | | |
| 70056 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 70057 | | |
| 70058 | | > select #61/A:12 |
| 70059 | | |
| 70060 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 70061 | | |
| 70062 | | > select #61/A:13 |
| 70063 | | |
| 70064 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 70065 | | |
| 70066 | | > select #61/A:15 |
| 70067 | | |
| 70068 | | 11 atoms, 10 bonds, 1 residue, 1 model selected |
| 70069 | | |
| 70070 | | > select #61/A:14 |
| 70071 | | |
| 70072 | | 11 atoms, 10 bonds, 1 residue, 1 model selected |
| 70073 | | |
| 70074 | | > show sel atoms |
| 70075 | | |
| 70076 | | > style sel stick |
| 70077 | | |
| 70078 | | Changed 11 atom styles |
| 70079 | | |
| 70080 | | > color sel red |
| 70081 | | |
| 70082 | | > select #61/L:444 |
| 70083 | | |
| 70084 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 70085 | | |
| 70086 | | > select #61/L:443 |
| 70087 | | |
| 70088 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 70089 | | |
| 70090 | | > select #61/L:444 |
| 70091 | | |
| 70092 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 70093 | | |
| 70094 | | > select #61/L:445 |
| 70095 | | |
| 70096 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 70097 | | |
| 70098 | | > show sel atoms |
| 70099 | | |
| 70100 | | > style sel stick |
| 70101 | | |
| 70102 | | Changed 8 atom styles |
| 70103 | | |
| 70104 | | > color sel red |
| 70105 | | |
| 70106 | | > select #61/L:441 |
| 70107 | | |
| 70108 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 70109 | | |
| 70110 | | > select #61/L:442 |
| 70111 | | |
| 70112 | | 11 atoms, 11 bonds, 1 residue, 1 model selected |
| 70113 | | |
| 70114 | | > select #61/L:440 |
| 70115 | | |
| 70116 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 70117 | | |
| 70118 | | > select #61/C:28 |
| 70119 | | |
| 70120 | | 5 atoms, 4 bonds, 1 residue, 1 model selected |
| 70121 | | |
| 70122 | | > select #61/L:444 |
| 70123 | | |
| 70124 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 70125 | | |
| 70126 | | > select #61/C:31 |
| 70127 | | |
| 70128 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 70129 | | |
| 70130 | | > select #61/L:447 |
| 70131 | | |
| 70132 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 70133 | | |
| 70134 | | > show sel atoms |
| 70135 | | |
| 70136 | | > style sel stick |
| 70137 | | |
| 70138 | | Changed 9 atom styles |
| 70139 | | |
| 70140 | | > color sel red |
| 70141 | | |
| 70142 | | > select clear |
| 70143 | | |
| 70144 | | > show #!1 models |
| 70145 | | |
| 70146 | | > save /Users/becca/Desktop/image12.png supersample 3 |
| 70147 | | |
| 70148 | | > save /Users/becca/Desktop/image13.png supersample 3 |
| 70149 | | |
| 70150 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 70151 | | > paper/Chimera sessions/20241009_COPI_leaf_AF3_for_figs_v8.cxs" |
| 70152 | | |
| 70153 | | ——— End of log from Wed Oct 9 16:21:15 2024 ——— |
| 70154 | | |
| 70155 | | opened ChimeraX session |
| 70156 | | |
| 70157 | | > show #!62 models |
| 70158 | | |
| 70159 | | > hide #!62 models |
| 70160 | | |
| 70161 | | > show #!63 models |
| 70162 | | |
| 70163 | | > hide #!63 models |
| 70164 | | |
| 70165 | | > show #!33 models |
| 70166 | | |
| 70167 | | > hide #!33 models |
| 70168 | | |
| 70169 | | > show #!33 models |
| 70170 | | |
| 70171 | | > hide #!33 models |
| 70172 | | |
| 70173 | | > show #!40 models |
| 70174 | | |
| 70175 | | > hide #!40 models |
| 70176 | | |
| 70177 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 70178 | | > paper/Chimera sessions/20241017_COPI_leaf_all_AF3_results_aligned.cxs" |
| 70179 | | |
| 70180 | | > close #2 |
| 70181 | | |
| 70182 | | > close #5-6#3-4 |
| 70183 | | |
| 70184 | | > close #8#7,9 |
| 70185 | | |
| 70186 | | > close #10-12 |
| 70187 | | |
| 70188 | | > close #13-15 |
| 70189 | | |
| 70190 | | > close #16-18 |
| 70191 | | |
| 70192 | | > close #19-21 |
| 70193 | | |
| 70194 | | > close #22-23 |
| 70195 | | |
| 70196 | | > close #24 |
| 70197 | | |
| 70198 | | > close #26 |
| 70199 | | |
| 70200 | | > close #27 |
| 70201 | | |
| 70202 | | > close #28 |
| 70203 | | |
| 70204 | | > close #29 |
| 70205 | | |
| 70206 | | > close #30 |
| 70207 | | |
| 70208 | | > close #31 |
| 70209 | | |
| 70210 | | > close #32 |
| 70211 | | |
| 70212 | | > close #33 |
| 70213 | | |
| 70214 | | > close #35 |
| 70215 | | |
| 70216 | | > close #36 |
| 70217 | | |
| 70218 | | > close #37 |
| 70219 | | |
| 70220 | | > show #!40 models |
| 70221 | | |
| 70222 | | > hide #!40 models |
| 70223 | | |
| 70224 | | > show #!56 models |
| 70225 | | |
| 70226 | | > hide #!56 models |
| 70227 | | |
| 70228 | | > show #!57 models |
| 70229 | | |
| 70230 | | > hide #!57 models |
| 70231 | | |
| 70232 | | > ui tool show "Side View" |
| 70233 | | |
| 70234 | | > show #!60 models |
| 70235 | | |
| 70236 | | > hide #!60 models |
| 70237 | | |
| 70238 | | > show #!58 models |
| 70239 | | |
| 70240 | | > close #58 |
| 70241 | | |
| 70242 | | > show #!59 models |
| 70243 | | |
| 70244 | | > hide #!1 models |
| 70245 | | |
| 70246 | | > hide #!61 models |
| 70247 | | |
| 70248 | | > hide #!59 models |
| 70249 | | |
| 70250 | | > show #!61 models |
| 70251 | | |
| 70252 | | > hide #!61 models |
| 70253 | | |
| 70254 | | > show #!59 models |
| 70255 | | |
| 70256 | | > close #59 |
| 70257 | | |
| 70258 | | > show #!60 models |
| 70259 | | |
| 70260 | | > hide #!60 models |
| 70261 | | |
| 70262 | | > show #!61 models |
| 70263 | | |
| 70264 | | > show #!62 models |
| 70265 | | |
| 70266 | | > hide #!62 models |
| 70267 | | |
| 70268 | | > show #!63 models |
| 70269 | | |
| 70270 | | > hide #!63 models |
| 70271 | | |
| 70272 | | > hide #!61 models |
| 70273 | | |
| 70274 | | > show #!62 models |
| 70275 | | |
| 70276 | | > hide #!62 models |
| 70277 | | |
| 70278 | | > show #!60 models |
| 70279 | | |
| 70280 | | > hide #!60 models |
| 70281 | | |
| 70282 | | > show #!62 models |
| 70283 | | |
| 70284 | | > hide #!62 models |
| 70285 | | |
| 70286 | | > show #!60 models |
| 70287 | | |
| 70288 | | > hide #!60 models |
| 70289 | | |
| 70290 | | > show #!63 models |
| 70291 | | |
| 70292 | | > hide #!63 models |
| 70293 | | |
| 70294 | | > show #!60 models |
| 70295 | | |
| 70296 | | > close #60 |
| 70297 | | |
| 70298 | | > show #!61 models |
| 70299 | | |
| 70300 | | > hide #!61 models |
| 70301 | | |
| 70302 | | > show #!63 models |
| 70303 | | |
| 70304 | | > hide #!63 models |
| 70305 | | |
| 70306 | | > show #!61 models |
| 70307 | | |
| 70308 | | > hide #!61 models |
| 70309 | | |
| 70310 | | > show #!62 models |
| 70311 | | |
| 70312 | | > show #!63 models |
| 70313 | | |
| 70314 | | > hide #!63 models |
| 70315 | | |
| 70316 | | > close #62 |
| 70317 | | |
| 70318 | | > show #!57 models |
| 70319 | | |
| 70320 | | > show #!56 models |
| 70321 | | |
| 70322 | | > hide #!56 models |
| 70323 | | |
| 70324 | | > select #57/A |
| 70325 | | |
| 70326 | | 3251 atoms, 3250 bonds, 813 residues, 1 model selected |
| 70327 | | |
| 70328 | | > color sel alphav2 |
| 70329 | | |
| 70330 | | > select #57/B |
| 70331 | | |
| 70332 | | 3198 atoms, 3193 bonds, 4 pseudobonds, 800 residues, 2 models selected |
| 70333 | | |
| 70334 | | > color sel betav2 |
| 70335 | | |
| 70336 | | > select #57/C |
| 70337 | | |
| 70338 | | 3371 atoms, 3370 bonds, 843 residues, 1 model selected |
| 70339 | | |
| 70340 | | > color sel betapv2 |
| 70341 | | |
| 70342 | | > select #57/D |
| 70343 | | |
| 70344 | | 706 atoms, 704 bonds, 1 pseudobond, 177 residues, 2 models selected |
| 70345 | | |
| 70346 | | > color sel deltav2 |
| 70347 | | |
| 70348 | | > select #57/G |
| 70349 | | |
| 70350 | | 3190 atoms, 3188 bonds, 1 pseudobond, 798 residues, 2 models selected |
| 70351 | | |
| 70352 | | > color sel gammav2 |
| 70353 | | |
| 70354 | | > select #57/K |
| 70355 | | |
| 70356 | | 2239 atoms, 2237 bonds, 1 pseudobond, 560 residues, 2 models selected |
| 70357 | | |
| 70358 | | > color sel gammav2 |
| 70359 | | |
| 70360 | | > select #57/L |
| 70361 | | |
| 70362 | | 555 atoms, 554 bonds, 139 residues, 1 model selected |
| 70363 | | |
| 70364 | | > color sel zetav2 |
| 70365 | | |
| 70366 | | > select #57/Z |
| 70367 | | |
| 70368 | | 555 atoms, 554 bonds, 139 residues, 1 model selected |
| 70369 | | |
| 70370 | | > color sel zetav2 |
| 70371 | | |
| 70372 | | > select #57/F |
| 70373 | | |
| 70374 | | 635 atoms, 634 bonds, 159 residues, 1 model selected |
| 70375 | | |
| 70376 | | > color sel arf1v2 |
| 70377 | | |
| 70378 | | > select #57/M |
| 70379 | | |
| 70380 | | 635 atoms, 634 bonds, 159 residues, 1 model selected |
| 70381 | | |
| 70382 | | > color sel arf1v2 |
| 70383 | | |
| 70384 | | > select #57/R |
| 70385 | | |
| 70386 | | 635 atoms, 634 bonds, 159 residues, 1 model selected |
| 70387 | | |
| 70388 | | > color sel arf1v2 |
| 70389 | | |
| 70390 | | > select add #57 |
| 70391 | | |
| 70392 | | 18970 atoms, 18952 bonds, 7 pseudobonds, 4746 residues, 2 models selected |
| 70393 | | |
| 70394 | | > select subtract #57 |
| 70395 | | |
| 70396 | | Nothing selected |
| 70397 | | |
| 70398 | | > hide #!57 models |
| 70399 | | |
| 70400 | | > show #!56 models |
| 70401 | | |
| 70402 | | > show #!57 models |
| 70403 | | |
| 70404 | | > hide #!57 models |
| 70405 | | |
| 70406 | | > hide #!56 models |
| 70407 | | |
| 70408 | | > show #!61 models |
| 70409 | | |
| 70410 | | > show #!63 models |
| 70411 | | |
| 70412 | | > hide #!63 models |
| 70413 | | |
| 70414 | | > show #!1 models |
| 70415 | | |
| 70416 | | > show #!40 models |
| 70417 | | |
| 70418 | | > hide #!40 models |
| 70419 | | |
| 70420 | | > hide #!34 models |
| 70421 | | |
| 70422 | | > show #!34 models |
| 70423 | | |
| 70424 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 70425 | | > paper/Chimera sessions/20241017_COPI_leaf_all_AF3_results_aligned.cxs" |
| 70426 | | |
| 70427 | | ——— End of log from Thu Oct 17 14:08:25 2024 ——— |
| 70428 | | |
| 70429 | | opened ChimeraX session |
| 70430 | | |
| 70431 | | > ui tool show "Side View" |
| 70432 | | |
| 70433 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 70434 | | QTBUG which explains how to reproduce. |
| 70435 | | |
| 70436 | | > hide #!61 models |
| 70437 | | |
| 70438 | | > show #!61 models |
| 70439 | | |
| 70440 | | > hide #!61 models |
| 70441 | | |
| 70442 | | > show #!61 models |
| 70443 | | |
| 70444 | | > hide #!61 atoms |
| 70445 | | |
| 70446 | | > show #!57 models |
| 70447 | | |
| 70448 | | > hide #!57 models |
| 70449 | | |
| 70450 | | > show #!57 models |
| 70451 | | |
| 70452 | | > volume #1 level 0.00726 |
| 70453 | | |
| 70454 | | > hide #!57 models |
| 70455 | | |
| 70456 | | > hide #!34 models |
| 70457 | | |
| 70458 | | > show #!34 models |
| 70459 | | |
| 70460 | | > show #34.1 models |
| 70461 | | |
| 70462 | | > show #34.2 models |
| 70463 | | |
| 70464 | | > show #34.3 models |
| 70465 | | |
| 70466 | | > show #34.4 models |
| 70467 | | |
| 70468 | | > show #34.5 models |
| 70469 | | |
| 70470 | | > show #34.6 models |
| 70471 | | |
| 70472 | | > show #34.7 models |
| 70473 | | |
| 70474 | | > show #34.8 models |
| 70475 | | |
| 70476 | | > show #34.9 models |
| 70477 | | |
| 70478 | | > hide #34.9 models |
| 70479 | | |
| 70480 | | > hide #34.7 models |
| 70481 | | |
| 70482 | | > hide #34.8 models |
| 70483 | | |
| 70484 | | > hide #34.6 models |
| 70485 | | |
| 70486 | | > hide #34.5 models |
| 70487 | | |
| 70488 | | > hide #34.4 models |
| 70489 | | |
| 70490 | | > hide #34.3 models |
| 70491 | | |
| 70492 | | > hide #34.2 models |
| 70493 | | |
| 70494 | | > hide #34.1 models |
| 70495 | | |
| 70496 | | > hide #!34 models |
| 70497 | | |
| 70498 | | > color list |
| 70499 | | |
| 70500 | | 19 custom colors: alphav1 |
| 70501 | | |
| 70502 | | , alphav2 |
| 70503 | | |
| 70504 | | , arf1v1 |
| 70505 | | |
| 70506 | | , arf1v2 |
| 70507 | | |
| 70508 | | , betapv1 |
| 70509 | | |
| 70510 | | , betapv2 |
| 70511 | | |
| 70512 | | , betav1 |
| 70513 | | |
| 70514 | | , betav2 |
| 70515 | | |
| 70516 | | , deltav1 |
| 70517 | | |
| 70518 | | , deltav2 |
| 70519 | | |
| 70520 | | , epsilonv1 |
| 70521 | | |
| 70522 | | , gammav1 |
| 70523 | | |
| 70524 | | , gammav2 |
| 70525 | | |
| 70526 | | , gammav3 |
| 70527 | | |
| 70528 | | , label_purple |
| 70529 | | |
| 70530 | | , label_purplev2 |
| 70531 | | |
| 70532 | | , label_red |
| 70533 | | |
| 70534 | | , zetav1 |
| 70535 | | |
| 70536 | | , and zetav2 |
| 70537 | | |
| 70538 | | . |
| 70539 | | 248 builtin colors: alice blue |
| 70540 | | |
| 70541 | | , aliceblue |
| 70542 | | |
| 70543 | | , antique white |
| 70544 | | |
| 70545 | | , antiquewhite |
| 70546 | | |
| 70547 | | , aqua |
| 70548 | | |
| 70549 | | , aquamarine |
| 70550 | | |
| 70551 | | , azure |
| 70552 | | |
| 70553 | | , beige |
| 70554 | | |
| 70555 | | , bisque |
| 70556 | | |
| 70557 | | , black |
| 70558 | | |
| 70559 | | , blanched almond |
| 70560 | | |
| 70561 | | , blanchedalmond |
| 70562 | | |
| 70563 | | , blue |
| 70564 | | |
| 70565 | | , blue violet |
| 70566 | | |
| 70567 | | , blueviolet |
| 70568 | | |
| 70569 | | , brown |
| 70570 | | |
| 70571 | | , burly wood |
| 70572 | | |
| 70573 | | , burlywood |
| 70574 | | |
| 70575 | | , cadet blue |
| 70576 | | |
| 70577 | | , cadetblue |
| 70578 | | |
| 70579 | | , chartreuse |
| 70580 | | |
| 70581 | | , chocolate |
| 70582 | | |
| 70583 | | , coral |
| 70584 | | |
| 70585 | | , cornflower blue |
| 70586 | | |
| 70587 | | , cornflowerblue |
| 70588 | | |
| 70589 | | , cornsilk |
| 70590 | | |
| 70591 | | , crimson |
| 70592 | | |
| 70593 | | , cyan |
| 70594 | | |
| 70595 | | , dark blue |
| 70596 | | |
| 70597 | | , dark cyan |
| 70598 | | |
| 70599 | | , dark goldenrod |
| 70600 | | |
| 70601 | | , dark gray |
| 70602 | | |
| 70603 | | , dark green |
| 70604 | | |
| 70605 | | , dark grey |
| 70606 | | |
| 70607 | | , dark khaki |
| 70608 | | |
| 70609 | | , dark magenta |
| 70610 | | |
| 70611 | | , dark olive green |
| 70612 | | |
| 70613 | | , dark orange |
| 70614 | | |
| 70615 | | , dark orchid |
| 70616 | | |
| 70617 | | , dark red |
| 70618 | | |
| 70619 | | , dark salmon |
| 70620 | | |
| 70621 | | , dark sea green |
| 70622 | | |
| 70623 | | , dark seagreen |
| 70624 | | |
| 70625 | | , dark slate blue |
| 70626 | | |
| 70627 | | , dark slate gray |
| 70628 | | |
| 70629 | | , dark slate grey |
| 70630 | | |
| 70631 | | , dark turquoise |
| 70632 | | |
| 70633 | | , dark violet |
| 70634 | | |
| 70635 | | , darkblue |
| 70636 | | |
| 70637 | | , darkcyan |
| 70638 | | |
| 70639 | | , darkgoldenrod |
| 70640 | | |
| 70641 | | , darkgray |
| 70642 | | |
| 70643 | | , darkgreen |
| 70644 | | |
| 70645 | | , darkgrey |
| 70646 | | |
| 70647 | | , darkkhaki |
| 70648 | | |
| 70649 | | , darkmagenta |
| 70650 | | |
| 70651 | | , darkolivegreen |
| 70652 | | |
| 70653 | | , darkorange |
| 70654 | | |
| 70655 | | , darkorchid |
| 70656 | | |
| 70657 | | , darkred |
| 70658 | | |
| 70659 | | , darksalmon |
| 70660 | | |
| 70661 | | , darkseagreen |
| 70662 | | |
| 70663 | | , darkslateblue |
| 70664 | | |
| 70665 | | , darkslategray |
| 70666 | | |
| 70667 | | , darkslategrey |
| 70668 | | |
| 70669 | | , darkturquoise |
| 70670 | | |
| 70671 | | , darkviolet |
| 70672 | | |
| 70673 | | , deep pink |
| 70674 | | |
| 70675 | | , deep sky blue |
| 70676 | | |
| 70677 | | , deep skyblue |
| 70678 | | |
| 70679 | | , deeppink |
| 70680 | | |
| 70681 | | , deepskyblue |
| 70682 | | |
| 70683 | | , dim gray |
| 70684 | | |
| 70685 | | , dim grey |
| 70686 | | |
| 70687 | | , dimgray |
| 70688 | | |
| 70689 | | , dimgrey |
| 70690 | | |
| 70691 | | , dodger blue |
| 70692 | | |
| 70693 | | , dodgerblue |
| 70694 | | |
| 70695 | | , fire brick |
| 70696 | | |
| 70697 | | , firebrick |
| 70698 | | |
| 70699 | | , floral white |
| 70700 | | |
| 70701 | | , floralwhite |
| 70702 | | |
| 70703 | | , forest green |
| 70704 | | |
| 70705 | | , forestgreen |
| 70706 | | |
| 70707 | | , fuchsia |
| 70708 | | |
| 70709 | | , gainsboro |
| 70710 | | |
| 70711 | | , ghost white |
| 70712 | | |
| 70713 | | , ghostwhite |
| 70714 | | |
| 70715 | | , gold |
| 70716 | | |
| 70717 | | , goldenrod |
| 70718 | | |
| 70719 | | , gray |
| 70720 | | |
| 70721 | | , green |
| 70722 | | |
| 70723 | | , green yellow |
| 70724 | | |
| 70725 | | , greenyellow |
| 70726 | | |
| 70727 | | , grey |
| 70728 | | |
| 70729 | | , honeydew |
| 70730 | | |
| 70731 | | , hot pink |
| 70732 | | |
| 70733 | | , hotpink |
| 70734 | | |
| 70735 | | , indian red |
| 70736 | | |
| 70737 | | , indianred |
| 70738 | | |
| 70739 | | , indigo |
| 70740 | | |
| 70741 | | , ivory |
| 70742 | | |
| 70743 | | , khaki |
| 70744 | | |
| 70745 | | , lavender |
| 70746 | | |
| 70747 | | , lavender blush |
| 70748 | | |
| 70749 | | , lavenderblush |
| 70750 | | |
| 70751 | | , lawn green |
| 70752 | | |
| 70753 | | , lawngreen |
| 70754 | | |
| 70755 | | , lemon chiffon |
| 70756 | | |
| 70757 | | , lemonchiffon |
| 70758 | | |
| 70759 | | , light blue |
| 70760 | | |
| 70761 | | , light coral |
| 70762 | | |
| 70763 | | , light cyan |
| 70764 | | |
| 70765 | | , light goldenrod yellow |
| 70766 | | |
| 70767 | | , light gray |
| 70768 | | |
| 70769 | | , light green |
| 70770 | | |
| 70771 | | , light grey |
| 70772 | | |
| 70773 | | , light pink |
| 70774 | | |
| 70775 | | , light salmon |
| 70776 | | |
| 70777 | | , light sea green |
| 70778 | | |
| 70779 | | , light seagreen |
| 70780 | | |
| 70781 | | , light sky blue |
| 70782 | | |
| 70783 | | , light skyblue |
| 70784 | | |
| 70785 | | , light slate gray |
| 70786 | | |
| 70787 | | , light slate grey |
| 70788 | | |
| 70789 | | , light steel blue |
| 70790 | | |
| 70791 | | , light yellow |
| 70792 | | |
| 70793 | | , lightblue |
| 70794 | | |
| 70795 | | , lightcoral |
| 70796 | | |
| 70797 | | , lightcyan |
| 70798 | | |
| 70799 | | , lightgoldenrodyellow |
| 70800 | | |
| 70801 | | , lightgray |
| 70802 | | |
| 70803 | | , lightgreen |
| 70804 | | |
| 70805 | | , lightgrey |
| 70806 | | |
| 70807 | | , lightpink |
| 70808 | | |
| 70809 | | , lightsalmon |
| 70810 | | |
| 70811 | | , lightseagreen |
| 70812 | | |
| 70813 | | , lightskyblue |
| 70814 | | |
| 70815 | | , lightslategray |
| 70816 | | |
| 70817 | | , lightslategrey |
| 70818 | | |
| 70819 | | , lightsteelblue |
| 70820 | | |
| 70821 | | , lightyellow |
| 70822 | | |
| 70823 | | , lime |
| 70824 | | |
| 70825 | | , lime green |
| 70826 | | |
| 70827 | | , limegreen |
| 70828 | | |
| 70829 | | , linen |
| 70830 | | |
| 70831 | | , magenta |
| 70832 | | |
| 70833 | | , maroon |
| 70834 | | |
| 70835 | | , medium aquamarine |
| 70836 | | |
| 70837 | | , medium blue |
| 70838 | | |
| 70839 | | , medium orchid |
| 70840 | | |
| 70841 | | , medium purple |
| 70842 | | |
| 70843 | | , medium sea green |
| 70844 | | |
| 70845 | | , medium seagreen |
| 70846 | | |
| 70847 | | , medium slate blue |
| 70848 | | |
| 70849 | | , medium spring green |
| 70850 | | |
| 70851 | | , medium turquoise |
| 70852 | | |
| 70853 | | , medium violet red |
| 70854 | | |
| 70855 | | , mediumaquamarine |
| 70856 | | |
| 70857 | | , mediumblue |
| 70858 | | |
| 70859 | | , mediumorchid |
| 70860 | | |
| 70861 | | , mediumpurple |
| 70862 | | |
| 70863 | | , mediumseagreen |
| 70864 | | |
| 70865 | | , mediumslateblue |
| 70866 | | |
| 70867 | | , mediumspringgreen |
| 70868 | | |
| 70869 | | , mediumturquoise |
| 70870 | | |
| 70871 | | , mediumvioletred |
| 70872 | | |
| 70873 | | , midnight blue |
| 70874 | | |
| 70875 | | , midnightblue |
| 70876 | | |
| 70877 | | , mint cream |
| 70878 | | |
| 70879 | | , mintcream |
| 70880 | | |
| 70881 | | , misty rose |
| 70882 | | |
| 70883 | | , mistyrose |
| 70884 | | |
| 70885 | | , moccasin |
| 70886 | | |
| 70887 | | , navajo white |
| 70888 | | |
| 70889 | | , navajowhite |
| 70890 | | |
| 70891 | | , navy |
| 70892 | | |
| 70893 | | , old lace |
| 70894 | | |
| 70895 | | , oldlace |
| 70896 | | |
| 70897 | | , olive |
| 70898 | | |
| 70899 | | , olive drab |
| 70900 | | |
| 70901 | | , olivedrab |
| 70902 | | |
| 70903 | | , orange |
| 70904 | | |
| 70905 | | , orange red |
| 70906 | | |
| 70907 | | , orangered |
| 70908 | | |
| 70909 | | , orchid |
| 70910 | | |
| 70911 | | , pale goldenrod |
| 70912 | | |
| 70913 | | , pale green |
| 70914 | | |
| 70915 | | , pale turquoise |
| 70916 | | |
| 70917 | | , pale violet red |
| 70918 | | |
| 70919 | | , palegoldenrod |
| 70920 | | |
| 70921 | | , palegreen |
| 70922 | | |
| 70923 | | , paleturquoise |
| 70924 | | |
| 70925 | | , palevioletred |
| 70926 | | |
| 70927 | | , papaya whip |
| 70928 | | |
| 70929 | | , papayawhip |
| 70930 | | |
| 70931 | | , peach puff |
| 70932 | | |
| 70933 | | , peachpuff |
| 70934 | | |
| 70935 | | , peru |
| 70936 | | |
| 70937 | | , pink |
| 70938 | | |
| 70939 | | , plum |
| 70940 | | |
| 70941 | | , powder blue |
| 70942 | | |
| 70943 | | , powderblue |
| 70944 | | |
| 70945 | | , purple |
| 70946 | | |
| 70947 | | , rebecca purple |
| 70948 | | |
| 70949 | | , rebeccapurple |
| 70950 | | |
| 70951 | | , red |
| 70952 | | |
| 70953 | | , rosy brown |
| 70954 | | |
| 70955 | | , rosybrown |
| 70956 | | |
| 70957 | | , royal blue |
| 70958 | | |
| 70959 | | , royalblue |
| 70960 | | |
| 70961 | | , saddle brown |
| 70962 | | |
| 70963 | | , saddlebrown |
| 70964 | | |
| 70965 | | , salmon |
| 70966 | | |
| 70967 | | , sandy brown |
| 70968 | | |
| 70969 | | , sandybrown |
| 70970 | | |
| 70971 | | , sea green |
| 70972 | | |
| 70973 | | , seagreen |
| 70974 | | |
| 70975 | | , seashell |
| 70976 | | |
| 70977 | | , sienna |
| 70978 | | |
| 70979 | | , silver |
| 70980 | | |
| 70981 | | , sky blue |
| 70982 | | |
| 70983 | | , skyblue |
| 70984 | | |
| 70985 | | , slate blue |
| 70986 | | |
| 70987 | | , slate gray |
| 70988 | | |
| 70989 | | , slate grey |
| 70990 | | |
| 70991 | | , slateblue |
| 70992 | | |
| 70993 | | , slategray |
| 70994 | | |
| 70995 | | , slategrey |
| 70996 | | |
| 70997 | | , snow |
| 70998 | | |
| 70999 | | , spring green |
| 71000 | | |
| 71001 | | , springgreen |
| 71002 | | |
| 71003 | | , steel blue |
| 71004 | | |
| 71005 | | , steelblue |
| 71006 | | |
| 71007 | | , tan |
| 71008 | | |
| 71009 | | , teal |
| 71010 | | |
| 71011 | | , thistle |
| 71012 | | |
| 71013 | | , tomato |
| 71014 | | |
| 71015 | | , transparent |
| 71016 | | |
| 71017 | | , turquoise |
| 71018 | | |
| 71019 | | , violet |
| 71020 | | |
| 71021 | | , wheat |
| 71022 | | |
| 71023 | | , white |
| 71024 | | |
| 71025 | | , white smoke |
| 71026 | | |
| 71027 | | , whitesmoke |
| 71028 | | |
| 71029 | | , yellow |
| 71030 | | |
| 71031 | | , yellow green |
| 71032 | | |
| 71033 | | , and yellowgreen |
| 71034 | | |
| 71035 | | . |
| 71036 | | |
| 71037 | | > show #!54 models |
| 71038 | | |
| 71039 | | > select add #54 |
| 71040 | | |
| 71041 | | 229 atoms, 228 bonds, 31 residues, 1 model selected |
| 71042 | | |
| 71043 | | > select subtract #54 |
| 71044 | | |
| 71045 | | Nothing selected |
| 71046 | | |
| 71047 | | > show #55 models |
| 71048 | | |
| 71049 | | > hide #55 models |
| 71050 | | |
| 71051 | | > hide #!54 models |
| 71052 | | |
| 71053 | | > select #61/A |
| 71054 | | |
| 71055 | | 229 atoms, 228 bonds, 31 residues, 1 model selected |
| 71056 | | |
| 71057 | | > color sel label_purple |
| 71058 | | |
| 71059 | | > select #61/B |
| 71060 | | |
| 71061 | | 1350 atoms, 1373 bonds, 167 residues, 1 model selected |
| 71062 | | |
| 71063 | | > color sel arf1v2 |
| 71064 | | |
| 71065 | | > select #61/C |
| 71066 | | |
| 71067 | | 1350 atoms, 1373 bonds, 167 residues, 1 model selected |
| 71068 | | |
| 71069 | | > color sel arf1v2 |
| 71070 | | |
| 71071 | | > select #61/C |
| 71072 | | |
| 71073 | | 1350 atoms, 1373 bonds, 167 residues, 1 model selected |
| 71074 | | |
| 71075 | | > select #61/D |
| 71076 | | |
| 71077 | | 4763 atoms, 4880 bonds, 591 residues, 1 model selected |
| 71078 | | |
| 71079 | | > color sel alphav2 |
| 71080 | | |
| 71081 | | > select #61/E |
| 71082 | | |
| 71083 | | 1856 atoms, 1891 bonds, 233 residues, 1 model selected |
| 71084 | | |
| 71085 | | > color sel alphav2 |
| 71086 | | |
| 71087 | | > select #61/E |
| 71088 | | |
| 71089 | | 1856 atoms, 1891 bonds, 233 residues, 1 model selected |
| 71090 | | |
| 71091 | | > select #61/G |
| 71092 | | |
| 71093 | | 2009 atoms, 2048 bonds, 252 residues, 1 model selected |
| 71094 | | |
| 71095 | | > color sel betapv2 |
| 71096 | | |
| 71097 | | > select #61/H |
| 71098 | | |
| 71099 | | 1872 atoms, 1904 bonds, 243 residues, 1 model selected |
| 71100 | | |
| 71101 | | > color sel betav2 |
| 71102 | | |
| 71103 | | > select #61/G |
| 71104 | | |
| 71105 | | 2009 atoms, 2048 bonds, 252 residues, 1 model selected |
| 71106 | | |
| 71107 | | > color sel betapv2 |
| 71108 | | |
| 71109 | | > select #61/F |
| 71110 | | |
| 71111 | | 4686 atoms, 4798 bonds, 586 residues, 1 model selected |
| 71112 | | |
| 71113 | | > color sel betapv2 |
| 71114 | | |
| 71115 | | > select #61/H |
| 71116 | | |
| 71117 | | 1872 atoms, 1904 bonds, 243 residues, 1 model selected |
| 71118 | | |
| 71119 | | > color sel betav2 |
| 71120 | | |
| 71121 | | > select #61/I |
| 71122 | | |
| 71123 | | 2488 atoms, 2518 bonds, 1 pseudobond, 313 residues, 2 models selected |
| 71124 | | |
| 71125 | | > color sel betav2 |
| 71126 | | |
| 71127 | | > select #61/J |
| 71128 | | |
| 71129 | | 2879 atoms, 2928 bonds, 1 pseudobond, 362 residues, 2 models selected |
| 71130 | | |
| 71131 | | > color sel betav2 |
| 71132 | | |
| 71133 | | > select #61/K |
| 71134 | | |
| 71135 | | 1626 atoms, 1645 bonds, 1 pseudobond, 201 residues, 2 models selected |
| 71136 | | |
| 71137 | | > color sel deltav2 |
| 71138 | | |
| 71139 | | > select #61/L |
| 71140 | | |
| 71141 | | 1163 atoms, 1177 bonds, 149 residues, 1 model selected |
| 71142 | | |
| 71143 | | > color sel gammav3 |
| 71144 | | |
| 71145 | | > select #61/M |
| 71146 | | |
| 71147 | | 2333 atoms, 2372 bonds, 299 residues, 1 model selected |
| 71148 | | |
| 71149 | | > color sel gammav3 |
| 71150 | | |
| 71151 | | > select #61/M |
| 71152 | | |
| 71153 | | 2333 atoms, 2372 bonds, 299 residues, 1 model selected |
| 71154 | | |
| 71155 | | > color sel gammav3 |
| 71156 | | |
| 71157 | | > select #61/N |
| 71158 | | |
| 71159 | | 1064 atoms, 1080 bonds, 1 pseudobond, 135 residues, 2 models selected |
| 71160 | | |
| 71161 | | > color sel gammav3 |
| 71162 | | |
| 71163 | | > select #61/O |
| 71164 | | |
| 71165 | | 1200 atoms, 1218 bonds, 150 residues, 1 model selected |
| 71166 | | |
| 71167 | | > color sel zetav2 |
| 71168 | | |
| 71169 | | > select #61/O |
| 71170 | | |
| 71171 | | 1200 atoms, 1218 bonds, 150 residues, 1 model selected |
| 71172 | | |
| 71173 | | > select #61/P |
| 71174 | | |
| 71175 | | 1350 atoms, 1373 bonds, 167 residues, 1 model selected |
| 71176 | | |
| 71177 | | > color sel arf1v2 |
| 71178 | | |
| 71179 | | > select #61/Q |
| 71180 | | |
| 71181 | | 1971 atoms, 2002 bonds, 244 residues, 1 model selected |
| 71182 | | |
| 71183 | | > color sel label_purple |
| 71184 | | |
| 71185 | | > select add #61 |
| 71186 | | |
| 71187 | | 34189 atoms, 34808 bonds, 4 pseudobonds, 4290 residues, 2 models selected |
| 71188 | | |
| 71189 | | > select subtract #61 |
| 71190 | | |
| 71191 | | Nothing selected |
| 71192 | | |
| 71193 | | > show #!63 models |
| 71194 | | |
| 71195 | | > hide #!1 models |
| 71196 | | |
| 71197 | | > hide #!61 models |
| 71198 | | |
| 71199 | | > volume #63 level 0.005298 |
| 71200 | | |
| 71201 | | [Repeated 1 time(s)] |
| 71202 | | |
| 71203 | | > volume #1 level 0.004804 |
| 71204 | | |
| 71205 | | > volume #1 level 0.005 |
| 71206 | | |
| 71207 | | > lighting simple |
| 71208 | | |
| 71209 | | > lighting soft |
| 71210 | | |
| 71211 | | > lighting full |
| 71212 | | |
| 71213 | | > lighting soft |
| 71214 | | |
| 71215 | | > lighting simple |
| 71216 | | |
| 71217 | | > graphics silhouettes false |
| 71218 | | |
| 71219 | | > graphics silhouettes true |
| 71220 | | |
| 71221 | | > lighting shadows true |
| 71222 | | |
| 71223 | | > lighting soft |
| 71224 | | |
| 71225 | | > graphics silhouettes false |
| 71226 | | |
| 71227 | | > lighting simple |
| 71228 | | |
| 71229 | | > graphics silhouettes true |
| 71230 | | |
| 71231 | | > lighting full |
| 71232 | | |
| 71233 | | > lighting simple |
| 71234 | | |
| 71235 | | > show #!61 models |
| 71236 | | |
| 71237 | | > volume #1 level 0.005 |
| 71238 | | |
| 71239 | | > save /Users/becca/Desktop/image1.png supersample 3 |
| 71240 | | |
| 71241 | | > open |
| 71242 | | > /Users/becca/Desktop/Postdoc/Icknield_workshop/My_processing/COPI_Golph/Model/Flexfit_tempy_ref_copi_golph_AF3_aligned/flex_fit_out/final.pdb |
| 71243 | | |
| 71244 | | Chain information for final.pdb #2 |
| 71245 | | --- |
| 71246 | | Chain | Description |
| 71247 | | A | No description available |
| 71248 | | B C | No description available |
| 71249 | | D | No description available |
| 71250 | | E | No description available |
| 71251 | | F | No description available |
| 71252 | | G | No description available |
| 71253 | | H | No description available |
| 71254 | | I | No description available |
| 71255 | | |
| 71256 | | |
| 71257 | | > hide #2#!61 atoms |
| 71258 | | |
| 71259 | | > show #2#!61 cartoons |
| 71260 | | |
| 71261 | | > show #!63 models |
| 71262 | | |
| 71263 | | > hide #!63 models |
| 71264 | | |
| 71265 | | > select add #2 |
| 71266 | | |
| 71267 | | 35468 atoms, 36117 bonds, 4477 residues, 1 model selected |
| 71268 | | |
| 71269 | | > select subtract #2 |
| 71270 | | |
| 71271 | | Nothing selected |
| 71272 | | |
| 71273 | | > hide #2 models |
| 71274 | | |
| 71275 | | > save /Users/becca/Desktop/image2.png supersample 3 |
| 71276 | | |
| 71277 | | > save /Users/becca/Desktop/image3.png supersample 3 |
| 71278 | | |
| 71279 | | > volume #1 level 0.008439 |
| 71280 | | |
| 71281 | | > volume #1 level 0.008 |
| 71282 | | |
| 71283 | | > save /Users/becca/Desktop/image4.png supersample 3 |
| 71284 | | |
| 71285 | | > save /Users/becca/Desktop/image5.png supersample 3 |
| 71286 | | |
| 71287 | | > save /Users/becca/Desktop/image6.png supersample 3 |
| 71288 | | |
| 71289 | | > volume #1 level 0.008 |
| 71290 | | |
| 71291 | | > rename #2 CopI_Golph_AF3_TEMPyReff_FF.pdb |
| 71292 | | |
| 71293 | | > select add #2 |
| 71294 | | |
| 71295 | | 35468 atoms, 36117 bonds, 4477 residues, 1 model selected |
| 71296 | | |
| 71297 | | > show #2 models |
| 71298 | | |
| 71299 | | > ui mousemode right "translate selected models" |
| 71300 | | |
| 71301 | | > view matrix models #2,1,0,0,-31.19,0,1,0,49.912,0,0,1,-16.182 |
| 71302 | | |
| 71303 | | > ui mousemode right "rotate selected models" |
| 71304 | | |
| 71305 | | > view matrix models |
| 71306 | | > #2,0.86751,-0.49534,0.045513,112.21,0.48448,0.86212,0.1484,-68.876,-0.11275,-0.10669,0.98788,40.337 |
| 71307 | | |
| 71308 | | > view matrix models |
| 71309 | | > #2,0.35175,-0.74534,-0.56634,453.85,0.28095,0.66117,-0.69564,245.76,0.89294,0.085576,0.44197,-106.93 |
| 71310 | | |
| 71311 | | > view matrix models |
| 71312 | | > #2,0.35414,-0.41531,-0.83791,440.5,0.025342,0.89991,-0.43533,180.32,0.93485,0.13294,0.32922,-99.832 |
| 71313 | | |
| 71314 | | > view matrix models |
| 71315 | | > #2,0.071998,0.33036,-0.94111,348.01,-0.37176,0.88445,0.28203,94.9,0.92553,0.32956,0.18649,-110.12 |
| 71316 | | |
| 71317 | | > view matrix models |
| 71318 | | > #2,0.35685,-0.71818,-0.59739,453.82,0.25685,0.69027,-0.67643,239.31,0.89816,0.087945,0.43079,-105.89 |
| 71319 | | |
| 71320 | | > view matrix models |
| 71321 | | > #2,0.0056735,-0.99781,-0.065887,470.96,0.78232,0.045468,-0.62121,261.08,0.62285,-0.04802,0.78087,-96.169 |
| 71322 | | |
| 71323 | | > view matrix models |
| 71324 | | > #2,0.37415,-0.55777,-0.74088,446.43,0.04545,0.80897,-0.58608,236.83,0.92625,0.18561,0.32803,-110.62 |
| 71325 | | |
| 71326 | | > view matrix models |
| 71327 | | > #2,0.035147,0.12676,-0.99131,420.41,-0.65475,0.75232,0.072984,248.66,0.75503,0.64649,0.10944,-128.9 |
| 71328 | | |
| 71329 | | > view matrix models |
| 71330 | | > #2,-0.037528,0.19288,-0.9805,418.43,-0.70286,0.69238,0.1631,251.98,0.71034,0.69528,0.10959,-130.48 |
| 71331 | | |
| 71332 | | > view matrix models |
| 71333 | | > #2,-0.068173,0.21783,-0.9736,417.72,-0.71944,0.66536,0.19924,253.4,0.6912,0.71403,0.11136,-131.07 |
| 71334 | | |
| 71335 | | > view matrix models |
| 71336 | | > #2,-0.07803,0.22552,-0.97111,417.51,-0.72434,0.65647,0.21065,253.86,0.68501,0.71985,0.11213,-131.24 |
| 71337 | | |
| 71338 | | > ui mousemode right "translate selected models" |
| 71339 | | |
| 71340 | | > view matrix models |
| 71341 | | > #2,-0.07803,0.22552,-0.97111,605.87,-0.72434,0.65647,0.21065,289.74,0.68501,0.71985,0.11213,-8.4516 |
| 71342 | | |
| 71343 | | > view matrix models |
| 71344 | | > #2,-0.07803,0.22552,-0.97111,534.39,-0.72434,0.65647,0.21065,325.87,0.68501,0.71985,0.11213,2.9277 |
| 71345 | | |
| 71346 | | > view matrix models |
| 71347 | | > #2,-0.07803,0.22552,-0.97111,604.94,-0.72434,0.65647,0.21065,292.49,0.68501,0.71985,0.11213,24.568 |
| 71348 | | |
| 71349 | | > ui mousemode right "rotate selected models" |
| 71350 | | |
| 71351 | | > view matrix models |
| 71352 | | > #2,0.97374,0.14663,0.17415,81.319,-0.18321,0.95879,0.21713,86.78,-0.13513,-0.24334,0.96048,242.57 |
| 71353 | | |
| 71354 | | > ui mousemode right "translate selected models" |
| 71355 | | |
| 71356 | | > view matrix models |
| 71357 | | > #2,0.97374,0.14663,0.17415,29.188,-0.18321,0.95879,0.21713,88.592,-0.13513,-0.24334,0.96048,259.92 |
| 71358 | | |
| 71359 | | > view matrix models |
| 71360 | | > #2,0.97374,0.14663,0.17415,-20.202,-0.18321,0.95879,0.21713,71.59,-0.13513,-0.24334,0.96048,178.44 |
| 71361 | | |
| 71362 | | > ui tool show "Fit in Map" |
| 71363 | | |
| 71364 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 71365 | | QTBUG which explains how to reproduce. |
| 71366 | | |
| 71367 | | > fitmap #2 inMap #1 |
| 71368 | | |
| 71369 | | Fit molecule CopI_Golph_AF3_TEMPyReff_FF.pdb (#2) to map |
| 71370 | | relion_locres_filtered_20240326_GT.mrc (#1) using 35468 atoms |
| 71371 | | average map value = 0.01005, steps = 128 |
| 71372 | | shifted from previous position = 6.59 |
| 71373 | | rotated from previous position = 19.5 degrees |
| 71374 | | atoms outside contour = 17045, contour level = 0.008 |
| 71375 | | |
| 71376 | | Position of CopI_Golph_AF3_TEMPyReff_FF.pdb (#2) relative to |
| 71377 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 71378 | | Matrix rotation and translation |
| 71379 | | 0.99999995 -0.00024332 0.00013426 0.03612248 |
| 71380 | | 0.00024337 0.99999990 -0.00033935 0.03885805 |
| 71381 | | -0.00013417 0.00033938 0.99999992 -0.12979950 |
| 71382 | | Axis 0.77368602 0.30599038 0.55477908 |
| 71383 | | Axis point 0.00000000 329.89751172 143.43354143 |
| 71384 | | Rotation angle (degrees) 0.02513175 |
| 71385 | | Shift along axis -0.03217240 |
| 71386 | | |
| 71387 | | |
| 71388 | | > select subtract #2 |
| 71389 | | |
| 71390 | | Nothing selected |
| 71391 | | |
| 71392 | | > hide #!61 models |
| 71393 | | |
| 71394 | | > color #2/A alphav2 |
| 71395 | | |
| 71396 | | > color #2/A label_purple |
| 71397 | | |
| 71398 | | > color #2/b Arf1 |
| 71399 | | |
| 71400 | | Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero', |
| 71401 | | 'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', |
| 71402 | | 'fromcartoons', 'fromribbons', or 'random' or a keyword |
| 71403 | | |
| 71404 | | > color #2/b arf1v2 |
| 71405 | | |
| 71406 | | > color #2/c arf1v2 |
| 71407 | | |
| 71408 | | > color #2/d alphav2 |
| 71409 | | |
| 71410 | | > color #2/e betapv2 |
| 71411 | | |
| 71412 | | > color #2/e betav2 |
| 71413 | | |
| 71414 | | > color #2/f betapv2 |
| 71415 | | |
| 71416 | | > color #2/g deltav2 |
| 71417 | | |
| 71418 | | > color #2/f gammav3 |
| 71419 | | |
| 71420 | | > color #2/g zetav2 |
| 71421 | | |
| 71422 | | > color #2/g deltav2 |
| 71423 | | |
| 71424 | | > color #2/h red |
| 71425 | | |
| 71426 | | > color #2/h gammav3 |
| 71427 | | |
| 71428 | | > color #2/i gammav3 |
| 71429 | | |
| 71430 | | > color #2/i zetav2 |
| 71431 | | |
| 71432 | | > color #2/j zetav2 |
| 71433 | | |
| 71434 | | > color #2/f betapv2\ |
| 71435 | | |
| 71436 | | Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero', |
| 71437 | | 'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', |
| 71438 | | 'fromcartoons', 'fromribbons', or 'random' or a keyword |
| 71439 | | |
| 71440 | | > color #2/f betapv2 |
| 71441 | | |
| 71442 | | > hide #2 models |
| 71443 | | |
| 71444 | | > show #2 models |
| 71445 | | |
| 71446 | | > hide #2 models |
| 71447 | | |
| 71448 | | > show #2 models |
| 71449 | | |
| 71450 | | > hide #2 models |
| 71451 | | |
| 71452 | | > show #2 models |
| 71453 | | |
| 71454 | | > hide #2 models |
| 71455 | | |
| 71456 | | > show #!61 models |
| 71457 | | |
| 71458 | | > show #2 models |
| 71459 | | |
| 71460 | | > hide #2 models |
| 71461 | | |
| 71462 | | > show #2 models |
| 71463 | | |
| 71464 | | > hide #2 models |
| 71465 | | |
| 71466 | | > show #2 models |
| 71467 | | |
| 71468 | | > hide #!61 models |
| 71469 | | |
| 71470 | | > show #!61 models |
| 71471 | | |
| 71472 | | > hide #!61 models |
| 71473 | | |
| 71474 | | > show #!61 models |
| 71475 | | |
| 71476 | | > hide #2 models |
| 71477 | | |
| 71478 | | > close #2 |
| 71479 | | |
| 71480 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 71481 | | > paper/Figures/2024_Nov/20241113_for_figures.cxs" |
| 71482 | | |
| 71483 | | > volume #1 level 0.005 |
| 71484 | | |
| 71485 | | > volume #1 level 0.006 |
| 71486 | | |
| 71487 | | > volume #1 level 0.0055 |
| 71488 | | |
| 71489 | | > save /Users/becca/Desktop/image1.png supersample 3 |
| 71490 | | |
| 71491 | | [Repeated 1 time(s)] |
| 71492 | | |
| 71493 | | > save /Users/becca/Desktop/image2.png supersample 3 |
| 71494 | | |
| 71495 | | > volume #1 level 0.008 |
| 71496 | | |
| 71497 | | > save /Users/becca/Desktop/image1.png supersample 3 |
| 71498 | | |
| 71499 | | > volume #1 level 0.005298 |
| 71500 | | |
| 71501 | | > volume #1 level 0.0055 |
| 71502 | | |
| 71503 | | > save /Users/becca/Desktop/image2.png supersample 3 |
| 71504 | | |
| 71505 | | > volume #1 level 0.008 |
| 71506 | | |
| 71507 | | > save /Users/becca/Desktop/image3.png supersample 3 |
| 71508 | | |
| 71509 | | > volume #1 level 0.005 |
| 71510 | | |
| 71511 | | > save /Users/becca/Desktop/image4.png supersample 3 |
| 71512 | | |
| 71513 | | > volume #1 level 0.008 |
| 71514 | | |
| 71515 | | > save /Users/becca/Desktop/image5.png supersample 3 |
| 71516 | | |
| 71517 | | > volume #1 level 0.005 |
| 71518 | | |
| 71519 | | > save /Users/becca/Desktop/image6.png supersample 3 |
| 71520 | | |
| 71521 | | > volume #1 level 0.008 |
| 71522 | | |
| 71523 | | > save /Users/becca/Desktop/image7.png supersample 3 |
| 71524 | | |
| 71525 | | > volume #1 level 0.005 |
| 71526 | | |
| 71527 | | > save /Users/becca/Desktop/image1.png supersample 3 |
| 71528 | | |
| 71529 | | > volume #1 level 0.008 |
| 71530 | | |
| 71531 | | > save /Users/becca/Desktop/image1.png supersample 3 |
| 71532 | | |
| 71533 | | [Repeated 2 time(s)] |
| 71534 | | |
| 71535 | | > lighting simple |
| 71536 | | |
| 71537 | | > lighting soft |
| 71538 | | |
| 71539 | | > lighting full |
| 71540 | | |
| 71541 | | > lighting simple |
| 71542 | | |
| 71543 | | > save /Users/becca/Desktop/image1.png supersample 3 |
| 71544 | | |
| 71545 | | > volume #1 level 0.005 |
| 71546 | | |
| 71547 | | > preset "overall look" "publication 1 (silhouettes)" |
| 71548 | | |
| 71549 | | Using preset: Overall Look / Publication 1 (Silhouettes) |
| 71550 | | Preset expands to these ChimeraX commands: |
| 71551 | | |
| 71552 | | |
| 71553 | | |
| 71554 | | set bg white |
| 71555 | | graphics silhouettes t |
| 71556 | | lighting depthCue f |
| 71557 | | |
| 71558 | | |
| 71559 | | |
| 71560 | | > preset "overall look" "publication 2 (depth-cued)" |
| 71561 | | |
| 71562 | | Using preset: Overall Look / Publication 2 (Depth-Cued) |
| 71563 | | Preset expands to these ChimeraX commands: |
| 71564 | | |
| 71565 | | |
| 71566 | | |
| 71567 | | set bg white |
| 71568 | | graphics silhouettes f |
| 71569 | | lighting depthCue t |
| 71570 | | |
| 71571 | | |
| 71572 | | |
| 71573 | | > preset "overall look" "publication 1 (silhouettes)" |
| 71574 | | |
| 71575 | | Using preset: Overall Look / Publication 1 (Silhouettes) |
| 71576 | | Preset expands to these ChimeraX commands: |
| 71577 | | |
| 71578 | | |
| 71579 | | |
| 71580 | | set bg white |
| 71581 | | graphics silhouettes t |
| 71582 | | lighting depthCue f |
| 71583 | | |
| 71584 | | |
| 71585 | | |
| 71586 | | > scene 1 |
| 71587 | | |
| 71588 | | Unknown command: scene 1 |
| 71589 | | |
| 71590 | | > view 1 |
| 71591 | | |
| 71592 | | Expected an objects specifier or a view name or a keyword |
| 71593 | | |
| 71594 | | > view view1 |
| 71595 | | |
| 71596 | | Expected an objects specifier or a view name or a keyword |
| 71597 | | |
| 71598 | | > view save view1 |
| 71599 | | |
| 71600 | | Expected an objects specifier or a view name or a keyword |
| 71601 | | |
| 71602 | | > view name view1 |
| 71603 | | |
| 71604 | | > volume #1 level 0.008 |
| 71605 | | |
| 71606 | | > view name view2 |
| 71607 | | |
| 71608 | | > view name view3 |
| 71609 | | |
| 71610 | | > view name view4 |
| 71611 | | |
| 71612 | | > view name view5 |
| 71613 | | |
| 71614 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 71615 | | > paper/Figures/2024_Nov/20241114.cxs" |
| 71616 | | |
| 71617 | | > view view1 |
| 71618 | | |
| 71619 | | > view view2 |
| 71620 | | |
| 71621 | | > view view1 |
| 71622 | | |
| 71623 | | > volume #1 level 0.005 |
| 71624 | | |
| 71625 | | > cd "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 71626 | | > paper/Figures/2024_Nov" |
| 71627 | | |
| 71628 | | Current working directory is: /Users/becca/Desktop/Postdoc/Grants and paper |
| 71629 | | drafts/Golph3 paper/Figures/2024_Nov |
| 71630 | | |
| 71631 | | > save overview_w_membrane.png supersample 3 transparentBackground true |
| 71632 | | |
| 71633 | | > volume #1 level 0.008 |
| 71634 | | |
| 71635 | | > save overview_wout_membrane.png supersample 3 transparentBackground true |
| 71636 | | |
| 71637 | | > view view1 |
| 71638 | | |
| 71639 | | > view view2 |
| 71640 | | |
| 71641 | | > view view3 |
| 71642 | | |
| 71643 | | > ui mousemode right select |
| 71644 | | |
| 71645 | | > select clear |
| 71646 | | |
| 71647 | | > select #61/M:11 |
| 71648 | | |
| 71649 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 71650 | | Drag select of 2 residues |
| 71651 | | Drag select of 6 residues |
| 71652 | | |
| 71653 | | > select up |
| 71654 | | |
| 71655 | | 180 atoms, 182 bonds, 23 residues, 1 model selected |
| 71656 | | |
| 71657 | | > select down |
| 71658 | | |
| 71659 | | 55 atoms, 6 residues, 1 model selected |
| 71660 | | |
| 71661 | | > delete sel |
| 71662 | | |
| 71663 | | Drag select of 2 residues |
| 71664 | | |
| 71665 | | > select clear |
| 71666 | | |
| 71667 | | Drag select of 2 residues |
| 71668 | | |
| 71669 | | > delete sel |
| 71670 | | |
| 71671 | | > select clear |
| 71672 | | |
| 71673 | | > select #61/M:9 |
| 71674 | | |
| 71675 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 71676 | | |
| 71677 | | > delete sel |
| 71678 | | |
| 71679 | | > select #61/M:10 |
| 71680 | | |
| 71681 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 71682 | | |
| 71683 | | > delete sel |
| 71684 | | |
| 71685 | | > select #61/M:11 |
| 71686 | | |
| 71687 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 71688 | | |
| 71689 | | > delete sel |
| 71690 | | |
| 71691 | | > select #61/M:12 |
| 71692 | | |
| 71693 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 71694 | | |
| 71695 | | > delete sel |
| 71696 | | |
| 71697 | | > select #61/M:13 |
| 71698 | | |
| 71699 | | 4 atoms, 3 bonds, 1 residue, 1 model selected |
| 71700 | | |
| 71701 | | > delete sel |
| 71702 | | |
| 71703 | | > select #61/M:14 |
| 71704 | | |
| 71705 | | 4 atoms, 3 bonds, 1 residue, 1 model selected |
| 71706 | | |
| 71707 | | > delete sel |
| 71708 | | |
| 71709 | | > select clear |
| 71710 | | |
| 71711 | | > select #61/M:15 |
| 71712 | | |
| 71713 | | 4 atoms, 3 bonds, 1 residue, 1 model selected |
| 71714 | | |
| 71715 | | > delete sel |
| 71716 | | |
| 71717 | | > select #61/M:16 |
| 71718 | | |
| 71719 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 71720 | | |
| 71721 | | > delete sel |
| 71722 | | |
| 71723 | | > view 3 |
| 71724 | | |
| 71725 | | Expected an objects specifier or a view name or a keyword |
| 71726 | | |
| 71727 | | > view view3 |
| 71728 | | |
| 71729 | | > select clear |
| 71730 | | |
| 71731 | | > ui mousemode right select |
| 71732 | | |
| 71733 | | > ui mousemode right "translate selected models" |
| 71734 | | |
| 71735 | | > save zoomed_view_no_bkgd.png supersample 3 transparentBackground true |
| 71736 | | |
| 71737 | | > view view4 |
| 71738 | | |
| 71739 | | > save zoomed_view_with_bkgd.png supersample 3 transparentBackground true |
| 71740 | | |
| 71741 | | > view view5 |
| 71742 | | |
| 71743 | | > view view4 |
| 71744 | | |
| 71745 | | > view view5 |
| 71746 | | |
| 71747 | | > save zoomed_view_with_full_bkgd.png supersample 3 transparentBackground true |
| 71748 | | |
| 71749 | | > view view2 |
| 71750 | | |
| 71751 | | > save overview_wout_membrane_v2.png supersample 3 transparentBackground true |
| 71752 | | |
| 71753 | | > color list |
| 71754 | | |
| 71755 | | 19 custom colors: alphav1 |
| 71756 | | |
| 71757 | | , alphav2 |
| 71758 | | |
| 71759 | | , arf1v1 |
| 71760 | | |
| 71761 | | , arf1v2 |
| 71762 | | |
| 71763 | | , betapv1 |
| 71764 | | |
| 71765 | | , betapv2 |
| 71766 | | |
| 71767 | | , betav1 |
| 71768 | | |
| 71769 | | , betav2 |
| 71770 | | |
| 71771 | | , deltav1 |
| 71772 | | |
| 71773 | | , deltav2 |
| 71774 | | |
| 71775 | | , epsilonv1 |
| 71776 | | |
| 71777 | | , gammav1 |
| 71778 | | |
| 71779 | | , gammav2 |
| 71780 | | |
| 71781 | | , gammav3 |
| 71782 | | |
| 71783 | | , label_purple |
| 71784 | | |
| 71785 | | , label_purplev2 |
| 71786 | | |
| 71787 | | , label_red |
| 71788 | | |
| 71789 | | , zetav1 |
| 71790 | | |
| 71791 | | , and zetav2 |
| 71792 | | |
| 71793 | | . |
| 71794 | | 248 builtin colors: alice blue |
| 71795 | | |
| 71796 | | , aliceblue |
| 71797 | | |
| 71798 | | , antique white |
| 71799 | | |
| 71800 | | , antiquewhite |
| 71801 | | |
| 71802 | | , aqua |
| 71803 | | |
| 71804 | | , aquamarine |
| 71805 | | |
| 71806 | | , azure |
| 71807 | | |
| 71808 | | , beige |
| 71809 | | |
| 71810 | | , bisque |
| 71811 | | |
| 71812 | | , black |
| 71813 | | |
| 71814 | | , blanched almond |
| 71815 | | |
| 71816 | | , blanchedalmond |
| 71817 | | |
| 71818 | | , blue |
| 71819 | | |
| 71820 | | , blue violet |
| 71821 | | |
| 71822 | | , blueviolet |
| 71823 | | |
| 71824 | | , brown |
| 71825 | | |
| 71826 | | , burly wood |
| 71827 | | |
| 71828 | | , burlywood |
| 71829 | | |
| 71830 | | , cadet blue |
| 71831 | | |
| 71832 | | , cadetblue |
| 71833 | | |
| 71834 | | , chartreuse |
| 71835 | | |
| 71836 | | , chocolate |
| 71837 | | |
| 71838 | | , coral |
| 71839 | | |
| 71840 | | , cornflower blue |
| 71841 | | |
| 71842 | | , cornflowerblue |
| 71843 | | |
| 71844 | | , cornsilk |
| 71845 | | |
| 71846 | | , crimson |
| 71847 | | |
| 71848 | | , cyan |
| 71849 | | |
| 71850 | | , dark blue |
| 71851 | | |
| 71852 | | , dark cyan |
| 71853 | | |
| 71854 | | , dark goldenrod |
| 71855 | | |
| 71856 | | , dark gray |
| 71857 | | |
| 71858 | | , dark green |
| 71859 | | |
| 71860 | | , dark grey |
| 71861 | | |
| 71862 | | , dark khaki |
| 71863 | | |
| 71864 | | , dark magenta |
| 71865 | | |
| 71866 | | , dark olive green |
| 71867 | | |
| 71868 | | , dark orange |
| 71869 | | |
| 71870 | | , dark orchid |
| 71871 | | |
| 71872 | | , dark red |
| 71873 | | |
| 71874 | | , dark salmon |
| 71875 | | |
| 71876 | | , dark sea green |
| 71877 | | |
| 71878 | | , dark seagreen |
| 71879 | | |
| 71880 | | , dark slate blue |
| 71881 | | |
| 71882 | | , dark slate gray |
| 71883 | | |
| 71884 | | , dark slate grey |
| 71885 | | |
| 71886 | | , dark turquoise |
| 71887 | | |
| 71888 | | , dark violet |
| 71889 | | |
| 71890 | | , darkblue |
| 71891 | | |
| 71892 | | , darkcyan |
| 71893 | | |
| 71894 | | , darkgoldenrod |
| 71895 | | |
| 71896 | | , darkgray |
| 71897 | | |
| 71898 | | , darkgreen |
| 71899 | | |
| 71900 | | , darkgrey |
| 71901 | | |
| 71902 | | , darkkhaki |
| 71903 | | |
| 71904 | | , darkmagenta |
| 71905 | | |
| 71906 | | , darkolivegreen |
| 71907 | | |
| 71908 | | , darkorange |
| 71909 | | |
| 71910 | | , darkorchid |
| 71911 | | |
| 71912 | | , darkred |
| 71913 | | |
| 71914 | | , darksalmon |
| 71915 | | |
| 71916 | | , darkseagreen |
| 71917 | | |
| 71918 | | , darkslateblue |
| 71919 | | |
| 71920 | | , darkslategray |
| 71921 | | |
| 71922 | | , darkslategrey |
| 71923 | | |
| 71924 | | , darkturquoise |
| 71925 | | |
| 71926 | | , darkviolet |
| 71927 | | |
| 71928 | | , deep pink |
| 71929 | | |
| 71930 | | , deep sky blue |
| 71931 | | |
| 71932 | | , deep skyblue |
| 71933 | | |
| 71934 | | , deeppink |
| 71935 | | |
| 71936 | | , deepskyblue |
| 71937 | | |
| 71938 | | , dim gray |
| 71939 | | |
| 71940 | | , dim grey |
| 71941 | | |
| 71942 | | , dimgray |
| 71943 | | |
| 71944 | | , dimgrey |
| 71945 | | |
| 71946 | | , dodger blue |
| 71947 | | |
| 71948 | | , dodgerblue |
| 71949 | | |
| 71950 | | , fire brick |
| 71951 | | |
| 71952 | | , firebrick |
| 71953 | | |
| 71954 | | , floral white |
| 71955 | | |
| 71956 | | , floralwhite |
| 71957 | | |
| 71958 | | , forest green |
| 71959 | | |
| 71960 | | , forestgreen |
| 71961 | | |
| 71962 | | , fuchsia |
| 71963 | | |
| 71964 | | , gainsboro |
| 71965 | | |
| 71966 | | , ghost white |
| 71967 | | |
| 71968 | | , ghostwhite |
| 71969 | | |
| 71970 | | , gold |
| 71971 | | |
| 71972 | | , goldenrod |
| 71973 | | |
| 71974 | | , gray |
| 71975 | | |
| 71976 | | , green |
| 71977 | | |
| 71978 | | , green yellow |
| 71979 | | |
| 71980 | | , greenyellow |
| 71981 | | |
| 71982 | | , grey |
| 71983 | | |
| 71984 | | , honeydew |
| 71985 | | |
| 71986 | | , hot pink |
| 71987 | | |
| 71988 | | , hotpink |
| 71989 | | |
| 71990 | | , indian red |
| 71991 | | |
| 71992 | | , indianred |
| 71993 | | |
| 71994 | | , indigo |
| 71995 | | |
| 71996 | | , ivory |
| 71997 | | |
| 71998 | | , khaki |
| 71999 | | |
| 72000 | | , lavender |
| 72001 | | |
| 72002 | | , lavender blush |
| 72003 | | |
| 72004 | | , lavenderblush |
| 72005 | | |
| 72006 | | , lawn green |
| 72007 | | |
| 72008 | | , lawngreen |
| 72009 | | |
| 72010 | | , lemon chiffon |
| 72011 | | |
| 72012 | | , lemonchiffon |
| 72013 | | |
| 72014 | | , light blue |
| 72015 | | |
| 72016 | | , light coral |
| 72017 | | |
| 72018 | | , light cyan |
| 72019 | | |
| 72020 | | , light goldenrod yellow |
| 72021 | | |
| 72022 | | , light gray |
| 72023 | | |
| 72024 | | , light green |
| 72025 | | |
| 72026 | | , light grey |
| 72027 | | |
| 72028 | | , light pink |
| 72029 | | |
| 72030 | | , light salmon |
| 72031 | | |
| 72032 | | , light sea green |
| 72033 | | |
| 72034 | | , light seagreen |
| 72035 | | |
| 72036 | | , light sky blue |
| 72037 | | |
| 72038 | | , light skyblue |
| 72039 | | |
| 72040 | | , light slate gray |
| 72041 | | |
| 72042 | | , light slate grey |
| 72043 | | |
| 72044 | | , light steel blue |
| 72045 | | |
| 72046 | | , light yellow |
| 72047 | | |
| 72048 | | , lightblue |
| 72049 | | |
| 72050 | | , lightcoral |
| 72051 | | |
| 72052 | | , lightcyan |
| 72053 | | |
| 72054 | | , lightgoldenrodyellow |
| 72055 | | |
| 72056 | | , lightgray |
| 72057 | | |
| 72058 | | , lightgreen |
| 72059 | | |
| 72060 | | , lightgrey |
| 72061 | | |
| 72062 | | , lightpink |
| 72063 | | |
| 72064 | | , lightsalmon |
| 72065 | | |
| 72066 | | , lightseagreen |
| 72067 | | |
| 72068 | | , lightskyblue |
| 72069 | | |
| 72070 | | , lightslategray |
| 72071 | | |
| 72072 | | , lightslategrey |
| 72073 | | |
| 72074 | | , lightsteelblue |
| 72075 | | |
| 72076 | | , lightyellow |
| 72077 | | |
| 72078 | | , lime |
| 72079 | | |
| 72080 | | , lime green |
| 72081 | | |
| 72082 | | , limegreen |
| 72083 | | |
| 72084 | | , linen |
| 72085 | | |
| 72086 | | , magenta |
| 72087 | | |
| 72088 | | , maroon |
| 72089 | | |
| 72090 | | , medium aquamarine |
| 72091 | | |
| 72092 | | , medium blue |
| 72093 | | |
| 72094 | | , medium orchid |
| 72095 | | |
| 72096 | | , medium purple |
| 72097 | | |
| 72098 | | , medium sea green |
| 72099 | | |
| 72100 | | , medium seagreen |
| 72101 | | |
| 72102 | | , medium slate blue |
| 72103 | | |
| 72104 | | , medium spring green |
| 72105 | | |
| 72106 | | , medium turquoise |
| 72107 | | |
| 72108 | | , medium violet red |
| 72109 | | |
| 72110 | | , mediumaquamarine |
| 72111 | | |
| 72112 | | , mediumblue |
| 72113 | | |
| 72114 | | , mediumorchid |
| 72115 | | |
| 72116 | | , mediumpurple |
| 72117 | | |
| 72118 | | , mediumseagreen |
| 72119 | | |
| 72120 | | , mediumslateblue |
| 72121 | | |
| 72122 | | , mediumspringgreen |
| 72123 | | |
| 72124 | | , mediumturquoise |
| 72125 | | |
| 72126 | | , mediumvioletred |
| 72127 | | |
| 72128 | | , midnight blue |
| 72129 | | |
| 72130 | | , midnightblue |
| 72131 | | |
| 72132 | | , mint cream |
| 72133 | | |
| 72134 | | , mintcream |
| 72135 | | |
| 72136 | | , misty rose |
| 72137 | | |
| 72138 | | , mistyrose |
| 72139 | | |
| 72140 | | , moccasin |
| 72141 | | |
| 72142 | | , navajo white |
| 72143 | | |
| 72144 | | , navajowhite |
| 72145 | | |
| 72146 | | , navy |
| 72147 | | |
| 72148 | | , old lace |
| 72149 | | |
| 72150 | | , oldlace |
| 72151 | | |
| 72152 | | , olive |
| 72153 | | |
| 72154 | | , olive drab |
| 72155 | | |
| 72156 | | , olivedrab |
| 72157 | | |
| 72158 | | , orange |
| 72159 | | |
| 72160 | | , orange red |
| 72161 | | |
| 72162 | | , orangered |
| 72163 | | |
| 72164 | | , orchid |
| 72165 | | |
| 72166 | | , pale goldenrod |
| 72167 | | |
| 72168 | | , pale green |
| 72169 | | |
| 72170 | | , pale turquoise |
| 72171 | | |
| 72172 | | , pale violet red |
| 72173 | | |
| 72174 | | , palegoldenrod |
| 72175 | | |
| 72176 | | , palegreen |
| 72177 | | |
| 72178 | | , paleturquoise |
| 72179 | | |
| 72180 | | , palevioletred |
| 72181 | | |
| 72182 | | , papaya whip |
| 72183 | | |
| 72184 | | , papayawhip |
| 72185 | | |
| 72186 | | , peach puff |
| 72187 | | |
| 72188 | | , peachpuff |
| 72189 | | |
| 72190 | | , peru |
| 72191 | | |
| 72192 | | , pink |
| 72193 | | |
| 72194 | | , plum |
| 72195 | | |
| 72196 | | , powder blue |
| 72197 | | |
| 72198 | | , powderblue |
| 72199 | | |
| 72200 | | , purple |
| 72201 | | |
| 72202 | | , rebecca purple |
| 72203 | | |
| 72204 | | , rebeccapurple |
| 72205 | | |
| 72206 | | , red |
| 72207 | | |
| 72208 | | , rosy brown |
| 72209 | | |
| 72210 | | , rosybrown |
| 72211 | | |
| 72212 | | , royal blue |
| 72213 | | |
| 72214 | | , royalblue |
| 72215 | | |
| 72216 | | , saddle brown |
| 72217 | | |
| 72218 | | , saddlebrown |
| 72219 | | |
| 72220 | | , salmon |
| 72221 | | |
| 72222 | | , sandy brown |
| 72223 | | |
| 72224 | | , sandybrown |
| 72225 | | |
| 72226 | | , sea green |
| 72227 | | |
| 72228 | | , seagreen |
| 72229 | | |
| 72230 | | , seashell |
| 72231 | | |
| 72232 | | , sienna |
| 72233 | | |
| 72234 | | , silver |
| 72235 | | |
| 72236 | | , sky blue |
| 72237 | | |
| 72238 | | , skyblue |
| 72239 | | |
| 72240 | | , slate blue |
| 72241 | | |
| 72242 | | , slate gray |
| 72243 | | |
| 72244 | | , slate grey |
| 72245 | | |
| 72246 | | , slateblue |
| 72247 | | |
| 72248 | | , slategray |
| 72249 | | |
| 72250 | | , slategrey |
| 72251 | | |
| 72252 | | , snow |
| 72253 | | |
| 72254 | | , spring green |
| 72255 | | |
| 72256 | | , springgreen |
| 72257 | | |
| 72258 | | , steel blue |
| 72259 | | |
| 72260 | | , steelblue |
| 72261 | | |
| 72262 | | , tan |
| 72263 | | |
| 72264 | | , teal |
| 72265 | | |
| 72266 | | , thistle |
| 72267 | | |
| 72268 | | , tomato |
| 72269 | | |
| 72270 | | , transparent |
| 72271 | | |
| 72272 | | , turquoise |
| 72273 | | |
| 72274 | | , violet |
| 72275 | | |
| 72276 | | , wheat |
| 72277 | | |
| 72278 | | , white |
| 72279 | | |
| 72280 | | , white smoke |
| 72281 | | |
| 72282 | | , whitesmoke |
| 72283 | | |
| 72284 | | , yellow |
| 72285 | | |
| 72286 | | , yellow green |
| 72287 | | |
| 72288 | | , and yellowgreen |
| 72289 | | |
| 72290 | | . |
| 72291 | | |
| 72292 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 72293 | | > paper/Figures/2024_Nov/20241114_v2.cxs" |
| 72294 | | |
| 72295 | | ——— End of log from Thu Nov 14 15:28:36 2024 ——— |
| 72296 | | |
| 72297 | | opened ChimeraX session |
| 72298 | | |
| 72299 | | > select add #38 |
| 72300 | | |
| 72301 | | 4763 atoms, 4880 bonds, 591 residues, 1 model selected |
| 72302 | | |
| 72303 | | > show #38 models |
| 72304 | | |
| 72305 | | > hide #!1 models |
| 72306 | | |
| 72307 | | > hide #!61 models |
| 72308 | | |
| 72309 | | > color sel alphav3 |
| 72310 | | |
| 72311 | | Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero', |
| 72312 | | 'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', |
| 72313 | | 'fromcartoons', 'fromribbons', or 'random' or a keyword |
| 72314 | | |
| 72315 | | > color alphav3 sel |
| 72316 | | |
| 72317 | | Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero', |
| 72318 | | 'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', |
| 72319 | | 'fromcartoons', 'fromribbons', or 'random' or a keyword |
| 72320 | | |
| 72321 | | > color list |
| 72322 | | |
| 72323 | | 19 custom colors: alphav1 |
| 72324 | | |
| 72325 | | , alphav2 |
| 72326 | | |
| 72327 | | , arf1v1 |
| 72328 | | |
| 72329 | | , arf1v2 |
| 72330 | | |
| 72331 | | , betapv1 |
| 72332 | | |
| 72333 | | , betapv2 |
| 72334 | | |
| 72335 | | , betav1 |
| 72336 | | |
| 72337 | | , betav2 |
| 72338 | | |
| 72339 | | , deltav1 |
| 72340 | | |
| 72341 | | , deltav2 |
| 72342 | | |
| 72343 | | , epsilonv1 |
| 72344 | | |
| 72345 | | , gammav1 |
| 72346 | | |
| 72347 | | , gammav2 |
| 72348 | | |
| 72349 | | , gammav3 |
| 72350 | | |
| 72351 | | , label_purple |
| 72352 | | |
| 72353 | | , label_purplev2 |
| 72354 | | |
| 72355 | | , label_red |
| 72356 | | |
| 72357 | | , zetav1 |
| 72358 | | |
| 72359 | | , and zetav2 |
| 72360 | | |
| 72361 | | . |
| 72362 | | 248 builtin colors: alice blue |
| 72363 | | |
| 72364 | | , aliceblue |
| 72365 | | |
| 72366 | | , antique white |
| 72367 | | |
| 72368 | | , antiquewhite |
| 72369 | | |
| 72370 | | , aqua |
| 72371 | | |
| 72372 | | , aquamarine |
| 72373 | | |
| 72374 | | , azure |
| 72375 | | |
| 72376 | | , beige |
| 72377 | | |
| 72378 | | , bisque |
| 72379 | | |
| 72380 | | , black |
| 72381 | | |
| 72382 | | , blanched almond |
| 72383 | | |
| 72384 | | , blanchedalmond |
| 72385 | | |
| 72386 | | , blue |
| 72387 | | |
| 72388 | | , blue violet |
| 72389 | | |
| 72390 | | , blueviolet |
| 72391 | | |
| 72392 | | , brown |
| 72393 | | |
| 72394 | | , burly wood |
| 72395 | | |
| 72396 | | , burlywood |
| 72397 | | |
| 72398 | | , cadet blue |
| 72399 | | |
| 72400 | | , cadetblue |
| 72401 | | |
| 72402 | | , chartreuse |
| 72403 | | |
| 72404 | | , chocolate |
| 72405 | | |
| 72406 | | , coral |
| 72407 | | |
| 72408 | | , cornflower blue |
| 72409 | | |
| 72410 | | , cornflowerblue |
| 72411 | | |
| 72412 | | , cornsilk |
| 72413 | | |
| 72414 | | , crimson |
| 72415 | | |
| 72416 | | , cyan |
| 72417 | | |
| 72418 | | , dark blue |
| 72419 | | |
| 72420 | | , dark cyan |
| 72421 | | |
| 72422 | | , dark goldenrod |
| 72423 | | |
| 72424 | | , dark gray |
| 72425 | | |
| 72426 | | , dark green |
| 72427 | | |
| 72428 | | , dark grey |
| 72429 | | |
| 72430 | | , dark khaki |
| 72431 | | |
| 72432 | | , dark magenta |
| 72433 | | |
| 72434 | | , dark olive green |
| 72435 | | |
| 72436 | | , dark orange |
| 72437 | | |
| 72438 | | , dark orchid |
| 72439 | | |
| 72440 | | , dark red |
| 72441 | | |
| 72442 | | , dark salmon |
| 72443 | | |
| 72444 | | , dark sea green |
| 72445 | | |
| 72446 | | , dark seagreen |
| 72447 | | |
| 72448 | | , dark slate blue |
| 72449 | | |
| 72450 | | , dark slate gray |
| 72451 | | |
| 72452 | | , dark slate grey |
| 72453 | | |
| 72454 | | , dark turquoise |
| 72455 | | |
| 72456 | | , dark violet |
| 72457 | | |
| 72458 | | , darkblue |
| 72459 | | |
| 72460 | | , darkcyan |
| 72461 | | |
| 72462 | | , darkgoldenrod |
| 72463 | | |
| 72464 | | , darkgray |
| 72465 | | |
| 72466 | | , darkgreen |
| 72467 | | |
| 72468 | | , darkgrey |
| 72469 | | |
| 72470 | | , darkkhaki |
| 72471 | | |
| 72472 | | , darkmagenta |
| 72473 | | |
| 72474 | | , darkolivegreen |
| 72475 | | |
| 72476 | | , darkorange |
| 72477 | | |
| 72478 | | , darkorchid |
| 72479 | | |
| 72480 | | , darkred |
| 72481 | | |
| 72482 | | , darksalmon |
| 72483 | | |
| 72484 | | , darkseagreen |
| 72485 | | |
| 72486 | | , darkslateblue |
| 72487 | | |
| 72488 | | , darkslategray |
| 72489 | | |
| 72490 | | , darkslategrey |
| 72491 | | |
| 72492 | | , darkturquoise |
| 72493 | | |
| 72494 | | , darkviolet |
| 72495 | | |
| 72496 | | , deep pink |
| 72497 | | |
| 72498 | | , deep sky blue |
| 72499 | | |
| 72500 | | , deep skyblue |
| 72501 | | |
| 72502 | | , deeppink |
| 72503 | | |
| 72504 | | , deepskyblue |
| 72505 | | |
| 72506 | | , dim gray |
| 72507 | | |
| 72508 | | , dim grey |
| 72509 | | |
| 72510 | | , dimgray |
| 72511 | | |
| 72512 | | , dimgrey |
| 72513 | | |
| 72514 | | , dodger blue |
| 72515 | | |
| 72516 | | , dodgerblue |
| 72517 | | |
| 72518 | | , fire brick |
| 72519 | | |
| 72520 | | , firebrick |
| 72521 | | |
| 72522 | | , floral white |
| 72523 | | |
| 72524 | | , floralwhite |
| 72525 | | |
| 72526 | | , forest green |
| 72527 | | |
| 72528 | | , forestgreen |
| 72529 | | |
| 72530 | | , fuchsia |
| 72531 | | |
| 72532 | | , gainsboro |
| 72533 | | |
| 72534 | | , ghost white |
| 72535 | | |
| 72536 | | , ghostwhite |
| 72537 | | |
| 72538 | | , gold |
| 72539 | | |
| 72540 | | , goldenrod |
| 72541 | | |
| 72542 | | , gray |
| 72543 | | |
| 72544 | | , green |
| 72545 | | |
| 72546 | | , green yellow |
| 72547 | | |
| 72548 | | , greenyellow |
| 72549 | | |
| 72550 | | , grey |
| 72551 | | |
| 72552 | | , honeydew |
| 72553 | | |
| 72554 | | , hot pink |
| 72555 | | |
| 72556 | | , hotpink |
| 72557 | | |
| 72558 | | , indian red |
| 72559 | | |
| 72560 | | , indianred |
| 72561 | | |
| 72562 | | , indigo |
| 72563 | | |
| 72564 | | , ivory |
| 72565 | | |
| 72566 | | , khaki |
| 72567 | | |
| 72568 | | , lavender |
| 72569 | | |
| 72570 | | , lavender blush |
| 72571 | | |
| 72572 | | , lavenderblush |
| 72573 | | |
| 72574 | | , lawn green |
| 72575 | | |
| 72576 | | , lawngreen |
| 72577 | | |
| 72578 | | , lemon chiffon |
| 72579 | | |
| 72580 | | , lemonchiffon |
| 72581 | | |
| 72582 | | , light blue |
| 72583 | | |
| 72584 | | , light coral |
| 72585 | | |
| 72586 | | , light cyan |
| 72587 | | |
| 72588 | | , light goldenrod yellow |
| 72589 | | |
| 72590 | | , light gray |
| 72591 | | |
| 72592 | | , light green |
| 72593 | | |
| 72594 | | , light grey |
| 72595 | | |
| 72596 | | , light pink |
| 72597 | | |
| 72598 | | , light salmon |
| 72599 | | |
| 72600 | | , light sea green |
| 72601 | | |
| 72602 | | , light seagreen |
| 72603 | | |
| 72604 | | , light sky blue |
| 72605 | | |
| 72606 | | , light skyblue |
| 72607 | | |
| 72608 | | , light slate gray |
| 72609 | | |
| 72610 | | , light slate grey |
| 72611 | | |
| 72612 | | , light steel blue |
| 72613 | | |
| 72614 | | , light yellow |
| 72615 | | |
| 72616 | | , lightblue |
| 72617 | | |
| 72618 | | , lightcoral |
| 72619 | | |
| 72620 | | , lightcyan |
| 72621 | | |
| 72622 | | , lightgoldenrodyellow |
| 72623 | | |
| 72624 | | , lightgray |
| 72625 | | |
| 72626 | | , lightgreen |
| 72627 | | |
| 72628 | | , lightgrey |
| 72629 | | |
| 72630 | | , lightpink |
| 72631 | | |
| 72632 | | , lightsalmon |
| 72633 | | |
| 72634 | | , lightseagreen |
| 72635 | | |
| 72636 | | , lightskyblue |
| 72637 | | |
| 72638 | | , lightslategray |
| 72639 | | |
| 72640 | | , lightslategrey |
| 72641 | | |
| 72642 | | , lightsteelblue |
| 72643 | | |
| 72644 | | , lightyellow |
| 72645 | | |
| 72646 | | , lime |
| 72647 | | |
| 72648 | | , lime green |
| 72649 | | |
| 72650 | | , limegreen |
| 72651 | | |
| 72652 | | , linen |
| 72653 | | |
| 72654 | | , magenta |
| 72655 | | |
| 72656 | | , maroon |
| 72657 | | |
| 72658 | | , medium aquamarine |
| 72659 | | |
| 72660 | | , medium blue |
| 72661 | | |
| 72662 | | , medium orchid |
| 72663 | | |
| 72664 | | , medium purple |
| 72665 | | |
| 72666 | | , medium sea green |
| 72667 | | |
| 72668 | | , medium seagreen |
| 72669 | | |
| 72670 | | , medium slate blue |
| 72671 | | |
| 72672 | | , medium spring green |
| 72673 | | |
| 72674 | | , medium turquoise |
| 72675 | | |
| 72676 | | , medium violet red |
| 72677 | | |
| 72678 | | , mediumaquamarine |
| 72679 | | |
| 72680 | | , mediumblue |
| 72681 | | |
| 72682 | | , mediumorchid |
| 72683 | | |
| 72684 | | , mediumpurple |
| 72685 | | |
| 72686 | | , mediumseagreen |
| 72687 | | |
| 72688 | | , mediumslateblue |
| 72689 | | |
| 72690 | | , mediumspringgreen |
| 72691 | | |
| 72692 | | , mediumturquoise |
| 72693 | | |
| 72694 | | , mediumvioletred |
| 72695 | | |
| 72696 | | , midnight blue |
| 72697 | | |
| 72698 | | , midnightblue |
| 72699 | | |
| 72700 | | , mint cream |
| 72701 | | |
| 72702 | | , mintcream |
| 72703 | | |
| 72704 | | , misty rose |
| 72705 | | |
| 72706 | | , mistyrose |
| 72707 | | |
| 72708 | | , moccasin |
| 72709 | | |
| 72710 | | , navajo white |
| 72711 | | |
| 72712 | | , navajowhite |
| 72713 | | |
| 72714 | | , navy |
| 72715 | | |
| 72716 | | , old lace |
| 72717 | | |
| 72718 | | , oldlace |
| 72719 | | |
| 72720 | | , olive |
| 72721 | | |
| 72722 | | , olive drab |
| 72723 | | |
| 72724 | | , olivedrab |
| 72725 | | |
| 72726 | | , orange |
| 72727 | | |
| 72728 | | , orange red |
| 72729 | | |
| 72730 | | , orangered |
| 72731 | | |
| 72732 | | , orchid |
| 72733 | | |
| 72734 | | , pale goldenrod |
| 72735 | | |
| 72736 | | , pale green |
| 72737 | | |
| 72738 | | , pale turquoise |
| 72739 | | |
| 72740 | | , pale violet red |
| 72741 | | |
| 72742 | | , palegoldenrod |
| 72743 | | |
| 72744 | | , palegreen |
| 72745 | | |
| 72746 | | , paleturquoise |
| 72747 | | |
| 72748 | | , palevioletred |
| 72749 | | |
| 72750 | | , papaya whip |
| 72751 | | |
| 72752 | | , papayawhip |
| 72753 | | |
| 72754 | | , peach puff |
| 72755 | | |
| 72756 | | , peachpuff |
| 72757 | | |
| 72758 | | , peru |
| 72759 | | |
| 72760 | | , pink |
| 72761 | | |
| 72762 | | , plum |
| 72763 | | |
| 72764 | | , powder blue |
| 72765 | | |
| 72766 | | , powderblue |
| 72767 | | |
| 72768 | | , purple |
| 72769 | | |
| 72770 | | , rebecca purple |
| 72771 | | |
| 72772 | | , rebeccapurple |
| 72773 | | |
| 72774 | | , red |
| 72775 | | |
| 72776 | | , rosy brown |
| 72777 | | |
| 72778 | | , rosybrown |
| 72779 | | |
| 72780 | | , royal blue |
| 72781 | | |
| 72782 | | , royalblue |
| 72783 | | |
| 72784 | | , saddle brown |
| 72785 | | |
| 72786 | | , saddlebrown |
| 72787 | | |
| 72788 | | , salmon |
| 72789 | | |
| 72790 | | , sandy brown |
| 72791 | | |
| 72792 | | , sandybrown |
| 72793 | | |
| 72794 | | , sea green |
| 72795 | | |
| 72796 | | , seagreen |
| 72797 | | |
| 72798 | | , seashell |
| 72799 | | |
| 72800 | | , sienna |
| 72801 | | |
| 72802 | | , silver |
| 72803 | | |
| 72804 | | , sky blue |
| 72805 | | |
| 72806 | | , skyblue |
| 72807 | | |
| 72808 | | , slate blue |
| 72809 | | |
| 72810 | | , slate gray |
| 72811 | | |
| 72812 | | , slate grey |
| 72813 | | |
| 72814 | | , slateblue |
| 72815 | | |
| 72816 | | , slategray |
| 72817 | | |
| 72818 | | , slategrey |
| 72819 | | |
| 72820 | | , snow |
| 72821 | | |
| 72822 | | , spring green |
| 72823 | | |
| 72824 | | , springgreen |
| 72825 | | |
| 72826 | | , steel blue |
| 72827 | | |
| 72828 | | , steelblue |
| 72829 | | |
| 72830 | | , tan |
| 72831 | | |
| 72832 | | , teal |
| 72833 | | |
| 72834 | | , thistle |
| 72835 | | |
| 72836 | | , tomato |
| 72837 | | |
| 72838 | | , transparent |
| 72839 | | |
| 72840 | | , turquoise |
| 72841 | | |
| 72842 | | , violet |
| 72843 | | |
| 72844 | | , wheat |
| 72845 | | |
| 72846 | | , white |
| 72847 | | |
| 72848 | | , white smoke |
| 72849 | | |
| 72850 | | , whitesmoke |
| 72851 | | |
| 72852 | | , yellow |
| 72853 | | |
| 72854 | | , yellow green |
| 72855 | | |
| 72856 | | , and yellowgreen |
| 72857 | | |
| 72858 | | . |
| 72859 | | |
| 72860 | | > color name alphav3 #57679E |
| 72861 | | |
| 72862 | | Color 'alphav3' is opaque: rgb(34.1%, 40.4%, 62%) hex: #57679e |
| 72863 | | |
| 72864 | | |
| 72865 | | |
| 72866 | | > color name betapv3 #7ACADA |
| 72867 | | |
| 72868 | | Color 'betapv3' is opaque: rgb(47.8%, 79.2%, 85.5%) hex: #7acada |
| 72869 | | |
| 72870 | | |
| 72871 | | |
| 72872 | | > color name betav3 #447A57 |
| 72873 | | |
| 72874 | | Color 'betav3' is opaque: rgb(26.7%, 47.8%, 34.1%) hex: #447a57 |
| 72875 | | |
| 72876 | | |
| 72877 | | |
| 72878 | | > color name gammav3 #ADE57C |
| 72879 | | |
| 72880 | | Color 'gammav3' is opaque: rgb(67.8%, 89.8%, 48.6%) hex: #ade57c |
| 72881 | | |
| 72882 | | |
| 72883 | | |
| 72884 | | > color name deltav3 #E5AF76 |
| 72885 | | |
| 72886 | | Color 'deltav3' is opaque: rgb(89.8%, 68.6%, 46.3%) hex: #e5af76 |
| 72887 | | |
| 72888 | | |
| 72889 | | |
| 72890 | | > color name epsilonv3 #EB8675 |
| 72891 | | |
| 72892 | | Color 'epsilonv3' is opaque: rgb(92.2%, 52.5%, 45.9%) hex: #eb8675 |
| 72893 | | |
| 72894 | | |
| 72895 | | |
| 72896 | | > color name zetav3 #F0E07B |
| 72897 | | |
| 72898 | | Color 'zetav3' is opaque: rgb(94.1%, 87.8%, 48.2%) hex: #f0e07b |
| 72899 | | |
| 72900 | | |
| 72901 | | |
| 72902 | | > color name arf1v3 #EB8BCA |
| 72903 | | |
| 72904 | | Color 'arf1v3' is opaque: rgb(92.2%, 54.5%, 79.2%) hex: #eb8bca |
| 72905 | | |
| 72906 | | |
| 72907 | | |
| 72908 | | > color name label_red_v3 #E51A16 |
| 72909 | | |
| 72910 | | Color 'label_red_v3' is opaque: rgb(89.8%, 10.2%, 8.63%) hex: #e51a16 |
| 72911 | | |
| 72912 | | |
| 72913 | | |
| 72914 | | > color name label_purple_v3 #691099 |
| 72915 | | |
| 72916 | | Color 'label_purple_v3' is opaque: rgb(41.2%, 6.27%, 60%) hex: #691099 |
| 72917 | | |
| 72918 | | |
| 72919 | | |
| 72920 | | > color name lable_purple_v4 #9057AD |
| 72921 | | |
| 72922 | | Color 'lable_purple_v4' is opaque: rgb(56.5%, 34.1%, 67.8%) hex: #9057ad |
| 72923 | | |
| 72924 | | |
| 72925 | | |
| 72926 | | > color name label_purple_v4 #9057AD |
| 72927 | | |
| 72928 | | Color 'label_purple_v4' is opaque: rgb(56.5%, 34.1%, 67.8%) hex: #9057ad |
| 72929 | | |
| 72930 | | |
| 72931 | | |
| 72932 | | > color sel alphav3 |
| 72933 | | |
| 72934 | | > hide #38 models |
| 72935 | | |
| 72936 | | > select subtract #38 |
| 72937 | | |
| 72938 | | Nothing selected |
| 72939 | | |
| 72940 | | > select add #39 |
| 72941 | | |
| 72942 | | 1856 atoms, 1891 bonds, 233 residues, 1 model selected |
| 72943 | | |
| 72944 | | > show #39 models |
| 72945 | | |
| 72946 | | > color sel alphav3 |
| 72947 | | |
| 72948 | | [Repeated 1 time(s)] |
| 72949 | | |
| 72950 | | > select subtract #39 |
| 72951 | | |
| 72952 | | Nothing selected |
| 72953 | | |
| 72954 | | > hide #39 models |
| 72955 | | |
| 72956 | | > show #41 models |
| 72957 | | |
| 72958 | | > select add #41 |
| 72959 | | |
| 72960 | | 4686 atoms, 4798 bonds, 586 residues, 1 model selected |
| 72961 | | |
| 72962 | | > color sel betapv3 |
| 72963 | | |
| 72964 | | > show #42 models |
| 72965 | | |
| 72966 | | > select add #42 |
| 72967 | | |
| 72968 | | 6695 atoms, 6846 bonds, 838 residues, 2 models selected |
| 72969 | | |
| 72970 | | > color sel betapv3 |
| 72971 | | |
| 72972 | | > select subtract #42 |
| 72973 | | |
| 72974 | | 4686 atoms, 4798 bonds, 586 residues, 1 model selected |
| 72975 | | |
| 72976 | | > select subtract #41 |
| 72977 | | |
| 72978 | | Nothing selected |
| 72979 | | |
| 72980 | | > hide #41 models |
| 72981 | | |
| 72982 | | > hide #42 models |
| 72983 | | |
| 72984 | | > show #!43 models |
| 72985 | | |
| 72986 | | > show #!44 models |
| 72987 | | |
| 72988 | | > show #!45 models |
| 72989 | | |
| 72990 | | > select add #45 |
| 72991 | | |
| 72992 | | 2879 atoms, 2928 bonds, 1 pseudobond, 362 residues, 2 models selected |
| 72993 | | |
| 72994 | | > select add #44 |
| 72995 | | |
| 72996 | | 5367 atoms, 5446 bonds, 2 pseudobonds, 675 residues, 4 models selected |
| 72997 | | |
| 72998 | | > select add #43 |
| 72999 | | |
| 73000 | | 7239 atoms, 7350 bonds, 2 pseudobonds, 918 residues, 5 models selected |
| 73001 | | |
| 73002 | | > color sel betav3 |
| 73003 | | |
| 73004 | | > select subtract #45 |
| 73005 | | |
| 73006 | | 4360 atoms, 4422 bonds, 1 pseudobond, 556 residues, 3 models selected |
| 73007 | | |
| 73008 | | > select subtract #44 |
| 73009 | | |
| 73010 | | 1872 atoms, 1904 bonds, 243 residues, 1 model selected |
| 73011 | | |
| 73012 | | > select subtract #43 |
| 73013 | | |
| 73014 | | Nothing selected |
| 73015 | | |
| 73016 | | > hide #!45 models |
| 73017 | | |
| 73018 | | > show #!45 models |
| 73019 | | |
| 73020 | | > hide #!44 models |
| 73021 | | |
| 73022 | | > hide #!43 models |
| 73023 | | |
| 73024 | | > hide #!45 models |
| 73025 | | |
| 73026 | | > show #!46 models |
| 73027 | | |
| 73028 | | > color sel deltav3 |
| 73029 | | |
| 73030 | | > select add #46 |
| 73031 | | |
| 73032 | | 1681 atoms, 1700 bonds, 1 pseudobond, 209 residues, 2 models selected |
| 73033 | | |
| 73034 | | > color sel deltav3 |
| 73035 | | |
| 73036 | | > select subtract #46 |
| 73037 | | |
| 73038 | | Nothing selected |
| 73039 | | |
| 73040 | | > hide #!46 models |
| 73041 | | |
| 73042 | | > show #47 models |
| 73043 | | |
| 73044 | | > show #48 models |
| 73045 | | |
| 73046 | | > show #!49 models |
| 73047 | | |
| 73048 | | > color sel gammav3 |
| 73049 | | |
| 73050 | | > select add #47 |
| 73051 | | |
| 73052 | | 1163 atoms, 1177 bonds, 149 residues, 1 model selected |
| 73053 | | |
| 73054 | | > select add #48 |
| 73055 | | |
| 73056 | | 3496 atoms, 3549 bonds, 448 residues, 2 models selected |
| 73057 | | |
| 73058 | | > select add #49 |
| 73059 | | |
| 73060 | | 4560 atoms, 4629 bonds, 1 pseudobond, 583 residues, 4 models selected |
| 73061 | | |
| 73062 | | > color sel gammav3 |
| 73063 | | |
| 73064 | | > select subtract #49 |
| 73065 | | |
| 73066 | | 3496 atoms, 3549 bonds, 448 residues, 2 models selected |
| 73067 | | |
| 73068 | | > select subtract #48 |
| 73069 | | |
| 73070 | | 1163 atoms, 1177 bonds, 149 residues, 1 model selected |
| 73071 | | |
| 73072 | | > select subtract #47 |
| 73073 | | |
| 73074 | | Nothing selected |
| 73075 | | |
| 73076 | | > hide #47 models |
| 73077 | | |
| 73078 | | > hide #48 models |
| 73079 | | |
| 73080 | | > hide #!49 models |
| 73081 | | |
| 73082 | | > show #50 models |
| 73083 | | |
| 73084 | | > color sel zetav3 |
| 73085 | | |
| 73086 | | > select add #50 |
| 73087 | | |
| 73088 | | 1200 atoms, 1218 bonds, 150 residues, 1 model selected |
| 73089 | | |
| 73090 | | > color sel zetav3 |
| 73091 | | |
| 73092 | | > select subtract #50 |
| 73093 | | |
| 73094 | | Nothing selected |
| 73095 | | |
| 73096 | | > hide #50 models |
| 73097 | | |
| 73098 | | > show #51 models |
| 73099 | | |
| 73100 | | > show #52 models |
| 73101 | | |
| 73102 | | > show #53 models |
| 73103 | | |
| 73104 | | > select add #53 |
| 73105 | | |
| 73106 | | 1350 atoms, 1373 bonds, 167 residues, 1 model selected |
| 73107 | | |
| 73108 | | > select add #52 |
| 73109 | | |
| 73110 | | 2700 atoms, 2746 bonds, 334 residues, 2 models selected |
| 73111 | | |
| 73112 | | > select add #51 |
| 73113 | | |
| 73114 | | 4050 atoms, 4119 bonds, 501 residues, 3 models selected |
| 73115 | | |
| 73116 | | > color sel arf1v3 |
| 73117 | | |
| 73118 | | > select subtract #51 |
| 73119 | | |
| 73120 | | 2700 atoms, 2746 bonds, 334 residues, 2 models selected |
| 73121 | | |
| 73122 | | > select subtract #52 |
| 73123 | | |
| 73124 | | 1350 atoms, 1373 bonds, 167 residues, 1 model selected |
| 73125 | | |
| 73126 | | > select subtract #53 |
| 73127 | | |
| 73128 | | Nothing selected |
| 73129 | | |
| 73130 | | > hide #53 models |
| 73131 | | |
| 73132 | | > hide #52 models |
| 73133 | | |
| 73134 | | > hide #51 models |
| 73135 | | |
| 73136 | | > show #!54 models |
| 73137 | | |
| 73138 | | > show #55 models |
| 73139 | | |
| 73140 | | > color sel label_purple_v3 |
| 73141 | | |
| 73142 | | > select add #54 |
| 73143 | | |
| 73144 | | 229 atoms, 228 bonds, 31 residues, 1 model selected |
| 73145 | | |
| 73146 | | > select add #55 |
| 73147 | | |
| 73148 | | 2200 atoms, 2230 bonds, 275 residues, 2 models selected |
| 73149 | | |
| 73150 | | > color sel label_purple_v3 |
| 73151 | | |
| 73152 | | > select subtract #55 |
| 73153 | | |
| 73154 | | 229 atoms, 228 bonds, 31 residues, 1 model selected |
| 73155 | | |
| 73156 | | > select subtract #54 |
| 73157 | | |
| 73158 | | Nothing selected |
| 73159 | | |
| 73160 | | > hide #!54 models |
| 73161 | | |
| 73162 | | > hide #55 models |
| 73163 | | |
| 73164 | | > show #!57 models |
| 73165 | | |
| 73166 | | > color #57/a alphav3 |
| 73167 | | |
| 73168 | | > color #57/b betav3 |
| 73169 | | |
| 73170 | | > color #57/c betapv3 |
| 73171 | | |
| 73172 | | > color #57/d deltav3 |
| 73173 | | |
| 73174 | | > color #57/e gammav3 |
| 73175 | | |
| 73176 | | > color #57/f gammav3 |
| 73177 | | |
| 73178 | | > color #57/f arf1v3 |
| 73179 | | |
| 73180 | | > color #57/g arf1v3 |
| 73181 | | |
| 73182 | | > color #57/g gammav3 |
| 73183 | | |
| 73184 | | > color #57/h arf1v3 |
| 73185 | | |
| 73186 | | > color #57/i arf1v3 |
| 73187 | | |
| 73188 | | > color #57/j arf1v3 |
| 73189 | | |
| 73190 | | > color #57/k arf1v3 |
| 73191 | | |
| 73192 | | > color #57/k gammav3 |
| 73193 | | |
| 73194 | | > color #57/l zetav3 |
| 73195 | | |
| 73196 | | > color #57/m zetav3 |
| 73197 | | |
| 73198 | | > color #57/m arf1v3 |
| 73199 | | |
| 73200 | | > color #57/n arf1v3 |
| 73201 | | |
| 73202 | | > color #57/o arf1v3 |
| 73203 | | |
| 73204 | | > color #57/p arf1v3 |
| 73205 | | |
| 73206 | | > color #57/q arf1v3 |
| 73207 | | |
| 73208 | | > color #57/r arf1v3 |
| 73209 | | |
| 73210 | | > color #57/a zetav3 |
| 73211 | | |
| 73212 | | > undo |
| 73213 | | |
| 73214 | | > color #57/z zetav3 |
| 73215 | | |
| 73216 | | > hide #!57 models |
| 73217 | | |
| 73218 | | > show #!61 models |
| 73219 | | |
| 73220 | | > color #58/d alphav3 |
| 73221 | | |
| 73222 | | > color #61/d alphav3 |
| 73223 | | |
| 73224 | | > color #61/e alphav3 |
| 73225 | | |
| 73226 | | > color #61/f betapv3 |
| 73227 | | |
| 73228 | | > color #61/g betapv3 |
| 73229 | | |
| 73230 | | > color #61/h betav3 |
| 73231 | | |
| 73232 | | > color #61/i betav3 |
| 73233 | | |
| 73234 | | > color #61/j betav3 |
| 73235 | | |
| 73236 | | > color #61/k deltav3 |
| 73237 | | |
| 73238 | | > color #61/l gammav3 |
| 73239 | | |
| 73240 | | > color #61/m gammav3 |
| 73241 | | |
| 73242 | | > color #61/n gammav3 |
| 73243 | | |
| 73244 | | > color #61/o zetav3 |
| 73245 | | |
| 73246 | | > color #61/p arf1v3 |
| 73247 | | |
| 73248 | | > color #61/q arf1v3 |
| 73249 | | |
| 73250 | | > color #61/q label_purple_v3 |
| 73251 | | |
| 73252 | | > color #61/a label_purple_v3 |
| 73253 | | |
| 73254 | | > color #61/b arf1v3 |
| 73255 | | |
| 73256 | | > color #61/c arf1v3 |
| 73257 | | |
| 73258 | | > show #!63 models |
| 73259 | | |
| 73260 | | > hide #!63 models |
| 73261 | | |
| 73262 | | > show #!63 models |
| 73263 | | |
| 73264 | | > hide #!63 models |
| 73265 | | |
| 73266 | | > ui tool show "Color Zone" |
| 73267 | | |
| 73268 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 73269 | | QTBUG which explains how to reproduce. |
| 73270 | | |
| 73271 | | [Repeated 1 time(s)] |
| 73272 | | |
| 73273 | | > color zone #63 near #61 distance 8.31 |
| 73274 | | |
| 73275 | | > show #!63 models |
| 73276 | | |
| 73277 | | > hide #!63 models |
| 73278 | | |
| 73279 | | > show #!63 models |
| 73280 | | |
| 73281 | | > hide #!63 models |
| 73282 | | |
| 73283 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 73284 | | > paper/Figures/2024_Nov/Figure1/20241114_v3.cxs" |
| 73285 | | |
| 73286 | | > show #!1 models |
| 73287 | | |
| 73288 | | > color #1 #d6d6d680 models |
| 73289 | | |
| 73290 | | > color #1 #d6d6d669 models |
| 73291 | | |
| 73292 | | > view view1 |
| 73293 | | |
| 73294 | | [Repeated 4 time(s)] |
| 73295 | | |
| 73296 | | > view view2 |
| 73297 | | |
| 73298 | | > volume #1 level 0.005 |
| 73299 | | |
| 73300 | | > preset "overall look" "publication 1 (silhouettes)" |
| 73301 | | |
| 73302 | | Using preset: Overall Look / Publication 1 (Silhouettes) |
| 73303 | | Preset expands to these ChimeraX commands: |
| 73304 | | |
| 73305 | | |
| 73306 | | |
| 73307 | | set bg white |
| 73308 | | graphics silhouettes t |
| 73309 | | lighting depthCue f |
| 73310 | | |
| 73311 | | |
| 73312 | | |
| 73313 | | > cd "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 73314 | | > paper/Figures/2024_Nov/Figure1" |
| 73315 | | |
| 73316 | | Current working directory is: /Users/becca/Desktop/Postdoc/Grants and paper |
| 73317 | | drafts/Golph3 paper/Figures/2024_Nov/Figure1 |
| 73318 | | |
| 73319 | | > volume #1 level 0.008 |
| 73320 | | |
| 73321 | | > save overview_wout_membrane_v3.png supersample 3 transparentBackground true |
| 73322 | | |
| 73323 | | > view view2 |
| 73324 | | |
| 73325 | | [Repeated 1 time(s)] |
| 73326 | | |
| 73327 | | > volume #1 level 0.005 |
| 73328 | | |
| 73329 | | > save overview_w_membrane_v2.png supersample 3 transparentBackground true |
| 73330 | | |
| 73331 | | > volume #1 level 0.008 |
| 73332 | | |
| 73333 | | > save overview_w_membrane_v3.png supersample 3 transparentBackground true |
| 73334 | | |
| 73335 | | > view view3 |
| 73336 | | |
| 73337 | | [Repeated 1 time(s)] |
| 73338 | | |
| 73339 | | > save zoomed_view_with_no_bkgd_v2.png supersample 3 transparentBackground |
| 73340 | | > true |
| 73341 | | |
| 73342 | | > view view4 |
| 73343 | | |
| 73344 | | > save zoomed_view_with_bkgd_v2.png supersample 3 transparentBackground true |
| 73345 | | |
| 73346 | | > view view5 |
| 73347 | | |
| 73348 | | > save zoomed_view_with_full_bkgd_v2.png supersample 3 transparentBackground |
| 73349 | | > true |
| 73350 | | |
| 73351 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 73352 | | QTBUG which explains how to reproduce. |
| 73353 | | |
| 73354 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 73355 | | > paper/Figures/2024_Nov/20241122_chimera_for_figures.cxs" |
| 73356 | | |
| 73357 | | ——— End of log from Fri Nov 22 15:12:25 2024 ——— |
| 73358 | | |
| 73359 | | opened ChimeraX session |
| 73360 | | |
| 73361 | | > view view5 |
| 73362 | | |
| 73363 | | > view |
| 73364 | | |
| 73365 | | > view view5 |
| 73366 | | |
| 73367 | | > ui tool show "Side View" |
| 73368 | | |
| 73369 | | > view name view6 |
| 73370 | | |
| 73371 | | > view view6 |
| 73372 | | |
| 73373 | | > hide #!1 models |
| 73374 | | |
| 73375 | | > show #!1 models |
| 73376 | | |
| 73377 | | > hide #!1 models |
| 73378 | | |
| 73379 | | > show #!1 models |
| 73380 | | |
| 73381 | | > hide #!1 models |
| 73382 | | |
| 73383 | | > show #!1 models |
| 73384 | | |
| 73385 | | > view name view7 |
| 73386 | | |
| 73387 | | > view view5 |
| 73388 | | |
| 73389 | | > hide #!1 models |
| 73390 | | |
| 73391 | | > show #!43 models |
| 73392 | | |
| 73393 | | > hide #!43 models |
| 73394 | | |
| 73395 | | > hide #!61 models |
| 73396 | | |
| 73397 | | > show #!43 models |
| 73398 | | |
| 73399 | | > show #!40 models |
| 73400 | | |
| 73401 | | > hide #!43 models |
| 73402 | | |
| 73403 | | > hide #!40 models |
| 73404 | | |
| 73405 | | > show #!61 models |
| 73406 | | |
| 73407 | | > show #!1 models |
| 73408 | | |
| 73409 | | > hide #!1 models |
| 73410 | | |
| 73411 | | > show #!1 models |
| 73412 | | |
| 73413 | | > view view5 |
| 73414 | | |
| 73415 | | > view view6 |
| 73416 | | |
| 73417 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 73418 | | QTBUG which explains how to reproduce. |
| 73419 | | |
| 73420 | | > cd "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 73421 | | > paper/Figures/2024_Nov/Figure1" |
| 73422 | | |
| 73423 | | Current working directory is: /Users/becca/Desktop/Postdoc/Grants and paper |
| 73424 | | drafts/Golph3 paper/Figures/2024_Nov/Figure1 |
| 73425 | | |
| 73426 | | > save zoomed_view_GOLPH3_alpha.png supersample 3 transparentBackground true |
| 73427 | | |
| 73428 | | > hide #!1 models |
| 73429 | | |
| 73430 | | > ui mousemode right select |
| 73431 | | |
| 73432 | | > select #61/D:136 |
| 73433 | | |
| 73434 | | 10 atoms, 10 bonds, 1 residue, 1 model selected |
| 73435 | | |
| 73436 | | > select #61/D:135 |
| 73437 | | |
| 73438 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 73439 | | |
| 73440 | | > select #61/D:136 |
| 73441 | | |
| 73442 | | 10 atoms, 10 bonds, 1 residue, 1 model selected |
| 73443 | | |
| 73444 | | > select clear |
| 73445 | | |
| 73446 | | > select #61/D:135 |
| 73447 | | |
| 73448 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 73449 | | |
| 73450 | | > style sel stick |
| 73451 | | |
| 73452 | | Changed 8 atom styles |
| 73453 | | |
| 73454 | | > show sel atoms |
| 73455 | | |
| 73456 | | > color sel byhetero |
| 73457 | | |
| 73458 | | > select #61/D:136 |
| 73459 | | |
| 73460 | | 10 atoms, 10 bonds, 1 residue, 1 model selected |
| 73461 | | |
| 73462 | | > show sel atoms |
| 73463 | | |
| 73464 | | > color sel byhetero |
| 73465 | | |
| 73466 | | > select #61/D:137 |
| 73467 | | |
| 73468 | | 12 atoms, 12 bonds, 1 residue, 1 model selected |
| 73469 | | |
| 73470 | | > show sel atoms |
| 73471 | | |
| 73472 | | > style sel stick |
| 73473 | | |
| 73474 | | Changed 12 atom styles |
| 73475 | | |
| 73476 | | > color sel byhetero |
| 73477 | | |
| 73478 | | > select clear |
| 73479 | | |
| 73480 | | > select #61/D:94 |
| 73481 | | |
| 73482 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 73483 | | |
| 73484 | | > show sel atoms |
| 73485 | | |
| 73486 | | > style sel stick |
| 73487 | | |
| 73488 | | Changed 8 atom styles |
| 73489 | | |
| 73490 | | > color sel byhetero |
| 73491 | | |
| 73492 | | > select #61/Q:56 |
| 73493 | | |
| 73494 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 73495 | | |
| 73496 | | > show sel atoms |
| 73497 | | |
| 73498 | | > style sel stick |
| 73499 | | |
| 73500 | | Changed 9 atom styles |
| 73501 | | |
| 73502 | | > color sel byhetero |
| 73503 | | |
| 73504 | | > select #61/D:290 |
| 73505 | | |
| 73506 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 73507 | | |
| 73508 | | > color sel byhetero |
| 73509 | | |
| 73510 | | > show sel atoms |
| 73511 | | |
| 73512 | | > style sel stick |
| 73513 | | |
| 73514 | | Changed 8 atom styles |
| 73515 | | |
| 73516 | | > select #61/D:292 |
| 73517 | | |
| 73518 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 73519 | | |
| 73520 | | > select #61/D:291 |
| 73521 | | |
| 73522 | | 10 atoms, 10 bonds, 1 residue, 1 model selected |
| 73523 | | |
| 73524 | | > select clear |
| 73525 | | |
| 73526 | | > select #61/D:292 |
| 73527 | | |
| 73528 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 73529 | | |
| 73530 | | > show sel atoms |
| 73531 | | |
| 73532 | | > style sel stick |
| 73533 | | |
| 73534 | | Changed 8 atom styles |
| 73535 | | |
| 73536 | | > color sel byhetero |
| 73537 | | |
| 73538 | | > select #61/Q:200 |
| 73539 | | |
| 73540 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 73541 | | |
| 73542 | | > show sel atoms |
| 73543 | | |
| 73544 | | > style sel stick |
| 73545 | | |
| 73546 | | Changed 7 atom styles |
| 73547 | | |
| 73548 | | > color sel byhetero |
| 73549 | | |
| 73550 | | > select #61/Q:191 |
| 73551 | | |
| 73552 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 73553 | | |
| 73554 | | > style sel stick |
| 73555 | | |
| 73556 | | Changed 9 atom styles |
| 73557 | | |
| 73558 | | > color sel byhetero |
| 73559 | | |
| 73560 | | > show sel atoms |
| 73561 | | |
| 73562 | | > select #61/Q:189 |
| 73563 | | |
| 73564 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 73565 | | |
| 73566 | | > show sel atoms |
| 73567 | | |
| 73568 | | > style sel stick |
| 73569 | | |
| 73570 | | Changed 7 atom styles |
| 73571 | | |
| 73572 | | > color sel byhetero |
| 73573 | | |
| 73574 | | > select #61/Q:182 |
| 73575 | | |
| 73576 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 73577 | | |
| 73578 | | > select #61/Q:183 |
| 73579 | | |
| 73580 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 73581 | | |
| 73582 | | > color sel byhetero |
| 73583 | | |
| 73584 | | > show sel atoms |
| 73585 | | |
| 73586 | | > style sel stick |
| 73587 | | |
| 73588 | | Changed 9 atom styles |
| 73589 | | |
| 73590 | | > select #61/Q:167 |
| 73591 | | |
| 73592 | | 10 atoms, 10 bonds, 1 residue, 1 model selected |
| 73593 | | |
| 73594 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 73595 | | QTBUG which explains how to reproduce. |
| 73596 | | |
| 73597 | | > select #61/Q:179 |
| 73598 | | |
| 73599 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 73600 | | |
| 73601 | | > show sel atoms |
| 73602 | | |
| 73603 | | > style sel stick |
| 73604 | | |
| 73605 | | Changed 9 atom styles |
| 73606 | | |
| 73607 | | > color sel byhetero |
| 73608 | | |
| 73609 | | > select #61/Q:176 |
| 73610 | | |
| 73611 | | 11 atoms, 10 bonds, 1 residue, 1 model selected |
| 73612 | | |
| 73613 | | > select #61/Q:175 |
| 73614 | | |
| 73615 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 73616 | | |
| 73617 | | > color sel byhetero |
| 73618 | | |
| 73619 | | > show sel atoms |
| 73620 | | |
| 73621 | | > style sel stick |
| 73622 | | |
| 73623 | | Changed 9 atom styles |
| 73624 | | |
| 73625 | | > select clear |
| 73626 | | |
| 73627 | | > view view6 |
| 73628 | | |
| 73629 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 73630 | | QTBUG which explains how to reproduce. |
| 73631 | | |
| 73632 | | > select clear |
| 73633 | | |
| 73634 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 73635 | | QTBUG which explains how to reproduce. |
| 73636 | | |
| 73637 | | > select clear |
| 73638 | | |
| 73639 | | > show #!1 models |
| 73640 | | |
| 73641 | | > hide #!1 models |
| 73642 | | |
| 73643 | | > show #!1 models |
| 73644 | | |
| 73645 | | > hide #!1 models |
| 73646 | | |
| 73647 | | Drag select of 1 residues |
| 73648 | | |
| 73649 | | > select #61/D:243 |
| 73650 | | |
| 73651 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 73652 | | |
| 73653 | | > select clear |
| 73654 | | |
| 73655 | | > show #!1 models |
| 73656 | | |
| 73657 | | > hide #!1 models |
| 73658 | | |
| 73659 | | > show #!1 models |
| 73660 | | |
| 73661 | | > hide #!1 models |
| 73662 | | |
| 73663 | | > show #!1 models |
| 73664 | | |
| 73665 | | > volume #1 level 0.005 |
| 73666 | | |
| 73667 | | > hide #!1 models |
| 73668 | | |
| 73669 | | > volume #1 level 0.008 |
| 73670 | | |
| 73671 | | > select clear |
| 73672 | | |
| 73673 | | > select #61/Q:183 |
| 73674 | | |
| 73675 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 73676 | | |
| 73677 | | > hide sel atoms |
| 73678 | | |
| 73679 | | > select clear |
| 73680 | | |
| 73681 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 73682 | | QTBUG which explains how to reproduce. |
| 73683 | | |
| 73684 | | > select clear |
| 73685 | | |
| 73686 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 73687 | | QTBUG which explains how to reproduce. |
| 73688 | | |
| 73689 | | > select clear |
| 73690 | | |
| 73691 | | > select #61/D:135 |
| 73692 | | |
| 73693 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 73694 | | |
| 73695 | | > view name view8 |
| 73696 | | |
| 73697 | | > select clear |
| 73698 | | |
| 73699 | | > select #61/D:135 |
| 73700 | | |
| 73701 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 73702 | | |
| 73703 | | > hide sel atoms |
| 73704 | | |
| 73705 | | > view view8 |
| 73706 | | |
| 73707 | | > select clear |
| 73708 | | |
| 73709 | | > select #61/D:211 |
| 73710 | | |
| 73711 | | 5 atoms, 4 bonds, 1 residue, 1 model selected |
| 73712 | | |
| 73713 | | > select clear |
| 73714 | | |
| 73715 | | > view name view9 |
| 73716 | | |
| 73717 | | > view view9 |
| 73718 | | |
| 73719 | | > view view8 |
| 73720 | | |
| 73721 | | > show #!1 models |
| 73722 | | |
| 73723 | | > view name view10 |
| 73724 | | |
| 73725 | | > save zoomed_view_GOLPH3_alpha_residues.png supersample 3 |
| 73726 | | > transparentBackground true |
| 73727 | | |
| 73728 | | > volume #1 level 0.005 |
| 73729 | | |
| 73730 | | > volume #1 level 0.006 |
| 73731 | | |
| 73732 | | > save zoomed_view_GOLPH3_alpha_G-K56_A-290-292.png supersample 3 |
| 73733 | | > transparentBackground true |
| 73734 | | |
| 73735 | | > save zoomed_view_GOLPH3_alpha_G-K56_A-290-292_v2.png supersample 3 |
| 73736 | | > transparentBackground true |
| 73737 | | |
| 73738 | | > view view8 |
| 73739 | | |
| 73740 | | > view view9 |
| 73741 | | |
| 73742 | | > hide #!1 models |
| 73743 | | |
| 73744 | | > select #61/Q:175 |
| 73745 | | |
| 73746 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 73747 | | |
| 73748 | | > hide sel atoms |
| 73749 | | |
| 73750 | | > select clear |
| 73751 | | |
| 73752 | | > view view9 |
| 73753 | | |
| 73754 | | > show #!1 models |
| 73755 | | |
| 73756 | | > volume #1 level 0.0065 |
| 73757 | | |
| 73758 | | > volume #1 level 0.006 |
| 73759 | | |
| 73760 | | > volume #1 level 0.007 |
| 73761 | | |
| 73762 | | > volume #1 level 0.006 |
| 73763 | | |
| 73764 | | > save zoomed_view_GOLPH3_alpha_G-K56_A-290-292_v3.png supersample 3 |
| 73765 | | > transparentBackground true |
| 73766 | | |
| 73767 | | > volume #1 level 0.008 |
| 73768 | | |
| 73769 | | > hide #!1 models |
| 73770 | | |
| 73771 | | > select #61/D:94@CB |
| 73772 | | |
| 73773 | | 1 atom, 1 residue, 1 model selected |
| 73774 | | |
| 73775 | | > select #61/D:94@CB |
| 73776 | | |
| 73777 | | 1 atom, 1 residue, 1 model selected |
| 73778 | | |
| 73779 | | > select #61/D:94 |
| 73780 | | |
| 73781 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 73782 | | |
| 73783 | | > select #61/D:93 |
| 73784 | | |
| 73785 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 73786 | | |
| 73787 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 73788 | | QTBUG which explains how to reproduce. |
| 73789 | | |
| 73790 | | > select #61/D:94 |
| 73791 | | |
| 73792 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 73793 | | |
| 73794 | | > select #61/D:94@CB |
| 73795 | | |
| 73796 | | 1 atom, 1 residue, 1 model selected |
| 73797 | | |
| 73798 | | > select #61/Q:179 |
| 73799 | | |
| 73800 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 73801 | | |
| 73802 | | > hide sel atoms |
| 73803 | | |
| 73804 | | > select clear |
| 73805 | | |
| 73806 | | > select #61/D:94 |
| 73807 | | |
| 73808 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 73809 | | |
| 73810 | | > hide sel atoms |
| 73811 | | |
| 73812 | | > select clear |
| 73813 | | |
| 73814 | | [Repeated 1 time(s)] |
| 73815 | | |
| 73816 | | > show #!1 models |
| 73817 | | |
| 73818 | | > select #1 |
| 73819 | | |
| 73820 | | 4 models selected |
| 73821 | | |
| 73822 | | > select subtract #1 |
| 73823 | | |
| 73824 | | Nothing selected |
| 73825 | | |
| 73826 | | > hide #!1 models |
| 73827 | | |
| 73828 | | > select clear |
| 73829 | | |
| 73830 | | > select #61/Q:200 |
| 73831 | | |
| 73832 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 73833 | | |
| 73834 | | > show sel atoms |
| 73835 | | |
| 73836 | | > style sel stick |
| 73837 | | |
| 73838 | | Changed 7 atom styles |
| 73839 | | |
| 73840 | | > style sel stick |
| 73841 | | |
| 73842 | | Changed 7 atom styles |
| 73843 | | |
| 73844 | | > select #61/Q:200 |
| 73845 | | |
| 73846 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 73847 | | |
| 73848 | | > select #61/Q:191 |
| 73849 | | |
| 73850 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 73851 | | |
| 73852 | | > show sel atoms |
| 73853 | | |
| 73854 | | > select #61/Q:189 |
| 73855 | | |
| 73856 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 73857 | | |
| 73858 | | > select #61/Q:191 |
| 73859 | | |
| 73860 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 73861 | | |
| 73862 | | > select #61/Q:200 |
| 73863 | | |
| 73864 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 73865 | | |
| 73866 | | > show #!1 models |
| 73867 | | |
| 73868 | | > select clear |
| 73869 | | |
| 73870 | | [Repeated 1 time(s)] |
| 73871 | | |
| 73872 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 73873 | | QTBUG which explains how to reproduce. |
| 73874 | | |
| 73875 | | [Repeated 3 time(s)] |
| 73876 | | |
| 73877 | | > volume #63 color #ffffff00 |
| 73878 | | |
| 73879 | | > volume #1 color #ebebeb |
| 73880 | | |
| 73881 | | > volume #1 color #ebebeb00 |
| 73882 | | |
| 73883 | | > volume #1 color #ebebeb22 |
| 73884 | | |
| 73885 | | > volume #1 color #ebebeb23 |
| 73886 | | |
| 73887 | | > volume #1 color #ebebeb32 |
| 73888 | | |
| 73889 | | > volume #1 color #ebebeb40 |
| 73890 | | |
| 73891 | | > volume #1 color white |
| 73892 | | |
| 73893 | | > volume #1 color #ffffff00 |
| 73894 | | |
| 73895 | | > lighting simple |
| 73896 | | |
| 73897 | | > volume #1 color #ffffff4d |
| 73898 | | |
| 73899 | | > ui tool show "Side View" |
| 73900 | | |
| 73901 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 73902 | | QTBUG which explains how to reproduce. |
| 73903 | | |
| 73904 | | [Repeated 1 time(s)] |
| 73905 | | |
| 73906 | | > hide #!1 models |
| 73907 | | |
| 73908 | | > show #!1 models |
| 73909 | | |
| 73910 | | > hide #!1 models |
| 73911 | | |
| 73912 | | > select #61/D:135 |
| 73913 | | |
| 73914 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 73915 | | |
| 73916 | | > show sel atoms |
| 73917 | | |
| 73918 | | > style sel stick |
| 73919 | | |
| 73920 | | Changed 8 atom styles |
| 73921 | | |
| 73922 | | > style sel stick |
| 73923 | | |
| 73924 | | Changed 8 atom styles |
| 73925 | | |
| 73926 | | > hide sel atoms |
| 73927 | | |
| 73928 | | > show #!1 models |
| 73929 | | |
| 73930 | | > save zoomed_view_GOLPH3_alpha_G-T189_K191_T200_A-136-137.png supersample 3 |
| 73931 | | > transparentBackground true |
| 73932 | | |
| 73933 | | > select clear |
| 73934 | | |
| 73935 | | > save zoomed_view_GOLPH3_alpha_G-T189_K191_T200_A-136-137.png supersample 3 |
| 73936 | | > transparentBackground true |
| 73937 | | |
| 73938 | | > view view10 |
| 73939 | | |
| 73940 | | > volume #1 level 0.006 |
| 73941 | | |
| 73942 | | > view view5 |
| 73943 | | |
| 73944 | | > save zoomed_view_GOLPH3_alpha_G-K56_A-290-292_v4.png supersample 3 |
| 73945 | | > transparentBackground true |
| 73946 | | |
| 73947 | | > view view5 |
| 73948 | | |
| 73949 | | > view name view11 |
| 73950 | | |
| 73951 | | [Repeated 1 time(s)] |
| 73952 | | |
| 73953 | | > save zoomed_view_GOLPH3_alpha_G-T189_K191_T200_A-136-137_v2.png supersample |
| 73954 | | > 3 transparentBackground true |
| 73955 | | |
| 73956 | | > hide #!1 models |
| 73957 | | |
| 73958 | | > select #61/Q:189 |
| 73959 | | |
| 73960 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 73961 | | |
| 73962 | | > hide sel atoms |
| 73963 | | |
| 73964 | | > select #61/Q:191 |
| 73965 | | |
| 73966 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 73967 | | |
| 73968 | | > hide sel atoms |
| 73969 | | |
| 73970 | | Drag select of 1 residues |
| 73971 | | |
| 73972 | | > hide sel atoms |
| 73973 | | |
| 73974 | | > select #61/D:136@CA |
| 73975 | | |
| 73976 | | 1 atom, 1 residue, 1 model selected |
| 73977 | | |
| 73978 | | > select #61/D:136 |
| 73979 | | |
| 73980 | | 10 atoms, 10 bonds, 1 residue, 1 model selected |
| 73981 | | |
| 73982 | | > hide sel atoms |
| 73983 | | |
| 73984 | | > select #61/D:137 |
| 73985 | | |
| 73986 | | 12 atoms, 12 bonds, 1 residue, 1 model selected |
| 73987 | | |
| 73988 | | > hide sel atoms |
| 73989 | | |
| 73990 | | > select #61/Q:200 |
| 73991 | | |
| 73992 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 73993 | | |
| 73994 | | > hide sel atoms |
| 73995 | | |
| 73996 | | > view view11 |
| 73997 | | |
| 73998 | | > select #61/Q:199 |
| 73999 | | |
| 74000 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 74001 | | |
| 74002 | | > select #61/Q:179 |
| 74003 | | |
| 74004 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 74005 | | |
| 74006 | | > show sel atoms |
| 74007 | | |
| 74008 | | > select #61/D:205 |
| 74009 | | |
| 74010 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 74011 | | |
| 74012 | | > select #61/D:94 |
| 74013 | | |
| 74014 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 74015 | | |
| 74016 | | > show sel atoms |
| 74017 | | |
| 74018 | | > select clear |
| 74019 | | |
| 74020 | | > show #!1 models |
| 74021 | | |
| 74022 | | > volume #1 level 0.008 |
| 74023 | | |
| 74024 | | > lighting simple |
| 74025 | | |
| 74026 | | > lighting soft |
| 74027 | | |
| 74028 | | > lighting simple |
| 74029 | | |
| 74030 | | > lighting soft |
| 74031 | | |
| 74032 | | > lighting full |
| 74033 | | |
| 74034 | | > lighting soft |
| 74035 | | |
| 74036 | | > lighting simple |
| 74037 | | |
| 74038 | | > save zoomed_view_GOLPH3_alpha_G-K179_A-94.png supersample 3 |
| 74039 | | > transparentBackground true |
| 74040 | | |
| 74041 | | > view name view12 |
| 74042 | | |
| 74043 | | > hide #!1 models |
| 74044 | | |
| 74045 | | > view view5 |
| 74046 | | |
| 74047 | | > select #61/Q:191 |
| 74048 | | |
| 74049 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 74050 | | |
| 74051 | | > show sel atoms |
| 74052 | | |
| 74053 | | > select #61/Q:190 |
| 74054 | | |
| 74055 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 74056 | | |
| 74057 | | > select #61/Q:189 |
| 74058 | | |
| 74059 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 74060 | | |
| 74061 | | > show sel atoms |
| 74062 | | |
| 74063 | | > select #61/Q:192 |
| 74064 | | |
| 74065 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 74066 | | |
| 74067 | | > select #61/Q:191 |
| 74068 | | |
| 74069 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 74070 | | |
| 74071 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 74072 | | QTBUG which explains how to reproduce. |
| 74073 | | |
| 74074 | | > select #61/Q:199 |
| 74075 | | |
| 74076 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 74077 | | |
| 74078 | | > select #61/Q:198 |
| 74079 | | |
| 74080 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 74081 | | |
| 74082 | | > select #61/Q:200 |
| 74083 | | |
| 74084 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 74085 | | |
| 74086 | | > show sel atoms |
| 74087 | | |
| 74088 | | > select #61/D:137 |
| 74089 | | |
| 74090 | | 12 atoms, 12 bonds, 1 residue, 1 model selected |
| 74091 | | |
| 74092 | | > show sel atoms |
| 74093 | | |
| 74094 | | > select #61/D:136 |
| 74095 | | |
| 74096 | | 10 atoms, 10 bonds, 1 residue, 1 model selected |
| 74097 | | |
| 74098 | | > show sel atoms |
| 74099 | | |
| 74100 | | > view view5 |
| 74101 | | |
| 74102 | | > view view6 |
| 74103 | | |
| 74104 | | > view view7 |
| 74105 | | |
| 74106 | | > view view8 |
| 74107 | | |
| 74108 | | > show #!1 models |
| 74109 | | |
| 74110 | | > volume #1 level 0.006 |
| 74111 | | |
| 74112 | | > volume #1 level 0.007 |
| 74113 | | |
| 74114 | | > volume #1 level 0.0067 |
| 74115 | | |
| 74116 | | > volume #1 level 0.0065 |
| 74117 | | |
| 74118 | | > select clear |
| 74119 | | |
| 74120 | | > view view5 |
| 74121 | | |
| 74122 | | > view view11 |
| 74123 | | |
| 74124 | | > volume #1 level 0.008 |
| 74125 | | |
| 74126 | | > volume #1 level 0.008491 |
| 74127 | | |
| 74128 | | > volume #1 level 0.008 |
| 74129 | | |
| 74130 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and |
| 74131 | | > resources/Processing/Files from csparc/J3101/J3101_alignments_20241125.py" |
| 74132 | | |
| 74133 | | Failed opening file /Users/becca/Desktop/Postdoc/COPI notebooks and |
| 74134 | | resources/Processing/Files from csparc/J3101/J3101_alignments_20241125.py: |
| 74135 | | ChimeraX cannot open a regular Chimera session. An exporter from Chimera to |
| 74136 | | ChimeraX is available in the latest Chimera release. Use its File->Export |
| 74137 | | Scene |
| 74138 | | menu item, and change the resulting dialog's "File Type" to ChimeraX. |
| 74139 | | |
| 74140 | | > show #!49 models |
| 74141 | | |
| 74142 | | > hide #!49 models |
| 74143 | | |
| 74144 | | > view view1 |
| 74145 | | |
| 74146 | | > show #!49 models |
| 74147 | | |
| 74148 | | > hide #!49 models |
| 74149 | | |
| 74150 | | > show #48 models |
| 74151 | | |
| 74152 | | > hide #48 models |
| 74153 | | |
| 74154 | | > show #!56 models |
| 74155 | | |
| 74156 | | > hide #!56 models |
| 74157 | | |
| 74158 | | > show #!57 models |
| 74159 | | |
| 74160 | | > hide #!57 models |
| 74161 | | |
| 74162 | | > show #39 models |
| 74163 | | |
| 74164 | | > hide #39 models |
| 74165 | | |
| 74166 | | > show #39 models |
| 74167 | | |
| 74168 | | > hide #!61 models |
| 74169 | | |
| 74170 | | > show #38 models |
| 74171 | | |
| 74172 | | > hide #39 models |
| 74173 | | |
| 74174 | | > hide #38 models |
| 74175 | | |
| 74176 | | > show #!61 models |
| 74177 | | |
| 74178 | | > view view1 |
| 74179 | | |
| 74180 | | > volume #1 level 0.005 |
| 74181 | | |
| 74182 | | > hide #!1 models |
| 74183 | | |
| 74184 | | Drag select of 57 atoms, 463 residues, 1 pseudobonds, 49 bonds |
| 74185 | | |
| 74186 | | > hide sel atoms |
| 74187 | | |
| 74188 | | > select clear |
| 74189 | | |
| 74190 | | > view view1 |
| 74191 | | |
| 74192 | | > show #!1 models |
| 74193 | | |
| 74194 | | > view view2 |
| 74195 | | |
| 74196 | | [Repeated 1 time(s)] |
| 74197 | | |
| 74198 | | > view view3 |
| 74199 | | |
| 74200 | | [Repeated 1 time(s)] |
| 74201 | | |
| 74202 | | > view name view12 |
| 74203 | | |
| 74204 | | > hide #!1 models |
| 74205 | | |
| 74206 | | > select #61/Q:81 |
| 74207 | | |
| 74208 | | 14 atoms, 15 bonds, 1 residue, 1 model selected |
| 74209 | | |
| 74210 | | > show sel atoms |
| 74211 | | |
| 74212 | | > style sel stick |
| 74213 | | |
| 74214 | | Changed 14 atom styles |
| 74215 | | |
| 74216 | | > color sel byhetero |
| 74217 | | |
| 74218 | | > select #61/Q:90 |
| 74219 | | |
| 74220 | | 11 atoms, 10 bonds, 1 residue, 1 model selected |
| 74221 | | |
| 74222 | | > show sel atoms |
| 74223 | | |
| 74224 | | > style sel stick |
| 74225 | | |
| 74226 | | Changed 11 atom styles |
| 74227 | | |
| 74228 | | > color sel byhetero |
| 74229 | | |
| 74230 | | > select #61/Q:171 |
| 74231 | | |
| 74232 | | 11 atoms, 10 bonds, 1 residue, 1 model selected |
| 74233 | | |
| 74234 | | > color sel byhetero |
| 74235 | | |
| 74236 | | > show sel atoms |
| 74237 | | |
| 74238 | | > style sel stick |
| 74239 | | |
| 74240 | | Changed 11 atom styles |
| 74241 | | |
| 74242 | | > select #61/Q:174 |
| 74243 | | |
| 74244 | | 11 atoms, 10 bonds, 1 residue, 1 model selected |
| 74245 | | |
| 74246 | | > show sel atoms |
| 74247 | | |
| 74248 | | > style sel stick |
| 74249 | | |
| 74250 | | Changed 11 atom styles |
| 74251 | | |
| 74252 | | > color sel byhetero |
| 74253 | | |
| 74254 | | > select clear |
| 74255 | | |
| 74256 | | > select #61/Q:172 |
| 74257 | | |
| 74258 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 74259 | | |
| 74260 | | > show sel atoms |
| 74261 | | |
| 74262 | | > show sel cartoons |
| 74263 | | |
| 74264 | | > style sel stick |
| 74265 | | |
| 74266 | | Changed 8 atom styles |
| 74267 | | |
| 74268 | | > color sel byhetero |
| 74269 | | |
| 74270 | | > view view12 |
| 74271 | | |
| 74272 | | > select #61/Q:81 |
| 74273 | | |
| 74274 | | 14 atoms, 15 bonds, 1 residue, 1 model selected |
| 74275 | | |
| 74276 | | > hide sel atoms |
| 74277 | | |
| 74278 | | > select clear |
| 74279 | | |
| 74280 | | > view view12 |
| 74281 | | |
| 74282 | | > show #!1 models |
| 74283 | | |
| 74284 | | > cd "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 74285 | | > paper/Figures/2024_Nov/Figure 2" |
| 74286 | | |
| 74287 | | Current working directory is: /Users/becca/Desktop/Postdoc/Grants and paper |
| 74288 | | drafts/Golph3 paper/Figures/2024_Nov/Figure 2 |
| 74289 | | |
| 74290 | | > save zoomed_view_GOLPH3_membrane_PI4P_site_sticks_v1.png supersample 3 |
| 74291 | | > transparentBackground true |
| 74292 | | |
| 74293 | | > volume #1 level 0.008 |
| 74294 | | |
| 74295 | | > view view12 |
| 74296 | | |
| 74297 | | > volume #1 level 0.005 |
| 74298 | | |
| 74299 | | > volume #1 level 0.008 |
| 74300 | | |
| 74301 | | > hide #!61 models |
| 74302 | | |
| 74303 | | > show #55 models |
| 74304 | | |
| 74305 | | > hide #!1 models |
| 74306 | | |
| 74307 | | > show #!61 models |
| 74308 | | |
| 74309 | | > select #55/A:171 |
| 74310 | | |
| 74311 | | 11 atoms, 10 bonds, 1 residue, 1 model selected |
| 74312 | | |
| 74313 | | > show sel atoms |
| 74314 | | |
| 74315 | | > style sel stick |
| 74316 | | |
| 74317 | | Changed 11 atom styles |
| 74318 | | |
| 74319 | | > color sel byhetero |
| 74320 | | |
| 74321 | | > select #55/A:175 |
| 74322 | | |
| 74323 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 74324 | | |
| 74325 | | > select #55/A:175 |
| 74326 | | |
| 74327 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 74328 | | |
| 74329 | | > select #55/A:174 |
| 74330 | | |
| 74331 | | 11 atoms, 10 bonds, 1 residue, 1 model selected |
| 74332 | | |
| 74333 | | > show sel atoms |
| 74334 | | |
| 74335 | | > style sel stick |
| 74336 | | |
| 74337 | | Changed 11 atom styles |
| 74338 | | |
| 74339 | | > color sel byhetero |
| 74340 | | |
| 74341 | | > select #61/Q:173 |
| 74342 | | |
| 74343 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 74344 | | |
| 74345 | | > select #55/A:173 |
| 74346 | | |
| 74347 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 74348 | | |
| 74349 | | > select #55/A:172 |
| 74350 | | |
| 74351 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 74352 | | |
| 74353 | | > select #55/A:172 |
| 74354 | | |
| 74355 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 74356 | | |
| 74357 | | > select #61/Q:172 |
| 74358 | | |
| 74359 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 74360 | | |
| 74361 | | > show sel atoms |
| 74362 | | |
| 74363 | | > style sel stick |
| 74364 | | |
| 74365 | | Changed 8 atom styles |
| 74366 | | |
| 74367 | | > select add #61 |
| 74368 | | |
| 74369 | | 34068 atoms, 34686 bonds, 4 pseudobonds, 4274 residues, 2 models selected |
| 74370 | | |
| 74371 | | > select subtract #61 |
| 74372 | | |
| 74373 | | Nothing selected |
| 74374 | | |
| 74375 | | > select add #61 |
| 74376 | | |
| 74377 | | 34068 atoms, 34686 bonds, 4 pseudobonds, 4274 residues, 2 models selected |
| 74378 | | |
| 74379 | | > select subtract #61 |
| 74380 | | |
| 74381 | | Nothing selected |
| 74382 | | |
| 74383 | | > hide #!61 models |
| 74384 | | |
| 74385 | | > select #55/A:172 |
| 74386 | | |
| 74387 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 74388 | | |
| 74389 | | > show sel atoms |
| 74390 | | |
| 74391 | | > style sel stick |
| 74392 | | |
| 74393 | | Changed 8 atom styles |
| 74394 | | |
| 74395 | | > color sel byhetero |
| 74396 | | |
| 74397 | | > select add #55 |
| 74398 | | |
| 74399 | | 1971 atoms, 2002 bonds, 244 residues, 1 model selected |
| 74400 | | |
| 74401 | | > show #!61 models |
| 74402 | | |
| 74403 | | > select #61/Q:90 |
| 74404 | | |
| 74405 | | 11 atoms, 10 bonds, 1 residue, 1 model selected |
| 74406 | | |
| 74407 | | > select add #61 |
| 74408 | | |
| 74409 | | 34068 atoms, 34686 bonds, 4 pseudobonds, 4274 residues, 2 models selected |
| 74410 | | |
| 74411 | | > hide #!61 models |
| 74412 | | |
| 74413 | | > select #55/A:90 |
| 74414 | | |
| 74415 | | 11 atoms, 10 bonds, 1 residue, 1 model selected |
| 74416 | | |
| 74417 | | > show sel atoms |
| 74418 | | |
| 74419 | | > style sel stick |
| 74420 | | |
| 74421 | | Changed 11 atom styles |
| 74422 | | |
| 74423 | | > color sel byhetero |
| 74424 | | |
| 74425 | | > select add #55 |
| 74426 | | |
| 74427 | | 1971 atoms, 2002 bonds, 244 residues, 1 model selected |
| 74428 | | |
| 74429 | | > select subtract #55 |
| 74430 | | |
| 74431 | | Nothing selected |
| 74432 | | |
| 74433 | | > hide #55 models |
| 74434 | | |
| 74435 | | > select add #61 |
| 74436 | | |
| 74437 | | 34068 atoms, 34686 bonds, 4 pseudobonds, 4274 residues, 2 models selected |
| 74438 | | |
| 74439 | | > show #!61 models |
| 74440 | | |
| 74441 | | > hide sel atoms |
| 74442 | | |
| 74443 | | > select subtract #61 |
| 74444 | | |
| 74445 | | Nothing selected |
| 74446 | | |
| 74447 | | > hide #!61 models |
| 74448 | | |
| 74449 | | > show #!61 models |
| 74450 | | |
| 74451 | | > show #!1 models |
| 74452 | | |
| 74453 | | > show #55 models |
| 74454 | | |
| 74455 | | > view view12 |
| 74456 | | |
| 74457 | | > volume #1 level 0.005 |
| 74458 | | |
| 74459 | | > hide #55 models |
| 74460 | | |
| 74461 | | > save zoomed_view_GOLPH3_membrane_PI4P_site_v2.png supersample 3 |
| 74462 | | > transparentBackground true |
| 74463 | | |
| 74464 | | > show #55 models |
| 74465 | | |
| 74466 | | > volume #1 level 0.008 |
| 74467 | | |
| 74468 | | > hide #!61 models |
| 74469 | | |
| 74470 | | > view name view13 |
| 74471 | | |
| 74472 | | > view view13 |
| 74473 | | |
| 74474 | | > view name view14 |
| 74475 | | |
| 74476 | | > save zoomed_view_GOLPH3_membrane_PI4P_site_rotate_v4.png supersample 3 |
| 74477 | | > transparentBackground true |
| 74478 | | |
| 74479 | | > view view13 |
| 74480 | | |
| 74481 | | > save zoomed_view_GOLPH3_membrane_PI4P_site_rotate_v3.png supersample 3 |
| 74482 | | > transparentBackground true |
| 74483 | | |
| 74484 | | > volume #1 level 0.005 |
| 74485 | | |
| 74486 | | > view name view15 |
| 74487 | | |
| 74488 | | > save zoomed_view_GOLPH3_membrane_PI4P_site_rotate_wmembrane_v5.png |
| 74489 | | > supersample 3 transparentBackground true |
| 74490 | | |
| 74491 | | > view view14 |
| 74492 | | |
| 74493 | | > volume #1 level 0.008 |
| 74494 | | |
| 74495 | | > volume #1 level 0.006 |
| 74496 | | |
| 74497 | | > volume #1 level 0.005 |
| 74498 | | |
| 74499 | | > volume #1 level 0.008 |
| 74500 | | |
| 74501 | | > color #1 #ffffff23 models |
| 74502 | | |
| 74503 | | > color #1 #ffffff24 models |
| 74504 | | |
| 74505 | | > color #1 #ffffff26 models |
| 74506 | | |
| 74507 | | > view name view16 |
| 74508 | | |
| 74509 | | > save zoomed_view_GOLPH3_membrane_PI4P_site_rotate_zoomed_v6.png supersample |
| 74510 | | > 3 transparentBackground true |
| 74511 | | |
| 74512 | | > hide #!1 models |
| 74513 | | |
| 74514 | | > view view1 |
| 74515 | | |
| 74516 | | > show #!1 models |
| 74517 | | |
| 74518 | | > hide #55 models |
| 74519 | | |
| 74520 | | > show #!61 models |
| 74521 | | |
| 74522 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 74523 | | QTBUG which explains how to reproduce. |
| 74524 | | |
| 74525 | | > select ~sel & ##selected |
| 74526 | | |
| 74527 | | Nothing selected |
| 74528 | | |
| 74529 | | > view view2 |
| 74530 | | |
| 74531 | | > view view3 |
| 74532 | | |
| 74533 | | > view view4 |
| 74534 | | |
| 74535 | | > view view5 |
| 74536 | | |
| 74537 | | > view view6 |
| 74538 | | |
| 74539 | | > view view7 |
| 74540 | | |
| 74541 | | > view view8 |
| 74542 | | |
| 74543 | | > view view9 |
| 74544 | | |
| 74545 | | > view view10 |
| 74546 | | |
| 74547 | | > view view11 |
| 74548 | | |
| 74549 | | > view view10 |
| 74550 | | |
| 74551 | | > cd "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 74552 | | > paper/Figures/2024_Nov/Figure 3" |
| 74553 | | |
| 74554 | | Current working directory is: /Users/becca/Desktop/Postdoc/Grants and paper |
| 74555 | | drafts/Golph3 paper/Figures/2024_Nov/Figure 3 |
| 74556 | | |
| 74557 | | > color #1 #ffffff4c models |
| 74558 | | |
| 74559 | | > color #1 #ffffff4d models |
| 74560 | | |
| 74561 | | > lighting simple |
| 74562 | | |
| 74563 | | > lighting soft |
| 74564 | | |
| 74565 | | > lighting simple |
| 74566 | | |
| 74567 | | > lighting full |
| 74568 | | |
| 74569 | | > lighting simple |
| 74570 | | |
| 74571 | | > lighting soft |
| 74572 | | |
| 74573 | | > lighting simple |
| 74574 | | |
| 74575 | | > lighting full |
| 74576 | | |
| 74577 | | > lighting soft |
| 74578 | | |
| 74579 | | > lighting simple |
| 74580 | | |
| 74581 | | > volume #1 level 0.006 |
| 74582 | | |
| 74583 | | > volume #1 level 0.007 |
| 74584 | | |
| 74585 | | > volume #1 level 0.008 |
| 74586 | | |
| 74587 | | > save zoomed_view_GOLPH3_alpha_overview.png supersample 3 |
| 74588 | | > transparentBackground true |
| 74589 | | |
| 74590 | | > view name view17 |
| 74591 | | |
| 74592 | | > hide #!1 models |
| 74593 | | |
| 74594 | | > select #61/Q:56 |
| 74595 | | |
| 74596 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 74597 | | |
| 74598 | | > show sel atoms |
| 74599 | | |
| 74600 | | > select #61/D:290 |
| 74601 | | |
| 74602 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 74603 | | |
| 74604 | | > show sel atoms |
| 74605 | | |
| 74606 | | > select #61/D:291 |
| 74607 | | |
| 74608 | | 10 atoms, 10 bonds, 1 residue, 1 model selected |
| 74609 | | |
| 74610 | | > select #61/D:292 |
| 74611 | | |
| 74612 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 74613 | | |
| 74614 | | > show sel atoms |
| 74615 | | |
| 74616 | | > show #!1 models |
| 74617 | | |
| 74618 | | > volume #1 level 0.006 |
| 74619 | | |
| 74620 | | [Repeated 1 time(s)] |
| 74621 | | |
| 74622 | | > color #1 #ffffff22 models |
| 74623 | | |
| 74624 | | > color #1 #ffffff23 models |
| 74625 | | |
| 74626 | | > color #1 #ffffff24 models |
| 74627 | | |
| 74628 | | > color #1 #ffffff26 models |
| 74629 | | |
| 74630 | | > lighting soft |
| 74631 | | |
| 74632 | | > lighting simple |
| 74633 | | |
| 74634 | | > color #1 #ffffff34 models |
| 74635 | | |
| 74636 | | > color #1 #ffffff37 models |
| 74637 | | |
| 74638 | | > color #1 #ffffff48 models |
| 74639 | | |
| 74640 | | > color #1 #ffffff51 models |
| 74641 | | |
| 74642 | | > color #1 #ffffff4e models |
| 74643 | | |
| 74644 | | > color #1 #ffffff4d models |
| 74645 | | |
| 74646 | | > color #1 white models |
| 74647 | | |
| 74648 | | > select clear |
| 74649 | | |
| 74650 | | > save zoomed_view_GOLPH3_alpha_K56-D290D292_v5.png supersample 3 |
| 74651 | | > transparentBackground true |
| 74652 | | |
| 74653 | | > hide #!1 models |
| 74654 | | |
| 74655 | | > view view7 |
| 74656 | | |
| 74657 | | > show #!1 models |
| 74658 | | |
| 74659 | | > hide #!1 models |
| 74660 | | |
| 74661 | | > select #61/O:73 |
| 74662 | | |
| 74663 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 74664 | | |
| 74665 | | > show sel atoms |
| 74666 | | |
| 74667 | | > style sel stick |
| 74668 | | |
| 74669 | | Changed 8 atom styles |
| 74670 | | |
| 74671 | | > color sel byhetero |
| 74672 | | |
| 74673 | | > select #61/O:72 |
| 74674 | | |
| 74675 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 74676 | | |
| 74677 | | > select #61/O:73 |
| 74678 | | |
| 74679 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 74680 | | |
| 74681 | | > color sel byhetero |
| 74682 | | |
| 74683 | | > select #61/O:72 |
| 74684 | | |
| 74685 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 74686 | | |
| 74687 | | > show sel atoms |
| 74688 | | |
| 74689 | | > style sel stick |
| 74690 | | |
| 74691 | | Changed 6 atom styles |
| 74692 | | |
| 74693 | | > color sel byhetero |
| 74694 | | |
| 74695 | | > select #61/O:74 |
| 74696 | | |
| 74697 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 74698 | | |
| 74699 | | > color sel byhetero |
| 74700 | | |
| 74701 | | > show sel atoms |
| 74702 | | |
| 74703 | | > style sel stick |
| 74704 | | |
| 74705 | | Changed 8 atom styles |
| 74706 | | |
| 74707 | | > select #61/Q:224 |
| 74708 | | |
| 74709 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 74710 | | |
| 74711 | | > show sel atoms |
| 74712 | | |
| 74713 | | > show sel cartoons |
| 74714 | | |
| 74715 | | > style sel stick |
| 74716 | | |
| 74717 | | Changed 9 atom styles |
| 74718 | | |
| 74719 | | > color sel byhetero |
| 74720 | | |
| 74721 | | > select #61/Q:223 |
| 74722 | | |
| 74723 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 74724 | | |
| 74725 | | > color sel byhetero |
| 74726 | | |
| 74727 | | > show sel atoms |
| 74728 | | |
| 74729 | | > style sel stick |
| 74730 | | |
| 74731 | | Changed 8 atom styles |
| 74732 | | |
| 74733 | | > select clear |
| 74734 | | |
| 74735 | | > select #61/Q:222 |
| 74736 | | |
| 74737 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 74738 | | |
| 74739 | | > select #61/Q:224 |
| 74740 | | |
| 74741 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 74742 | | |
| 74743 | | > select #61/Q:225 |
| 74744 | | |
| 74745 | | 14 atoms, 15 bonds, 1 residue, 1 model selected |
| 74746 | | |
| 74747 | | > show sel atoms |
| 74748 | | |
| 74749 | | > style sel stick |
| 74750 | | |
| 74751 | | Changed 14 atom styles |
| 74752 | | |
| 74753 | | > color sel byhetero |
| 74754 | | |
| 74755 | | > select #61/Q:226 |
| 74756 | | |
| 74757 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 74758 | | |
| 74759 | | > color sel byhetero |
| 74760 | | |
| 74761 | | > select #61/Q:227 |
| 74762 | | |
| 74763 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 74764 | | |
| 74765 | | > color sel bynucleotide |
| 74766 | | |
| 74767 | | > color sel byhetero |
| 74768 | | |
| 74769 | | > show sel atoms |
| 74770 | | |
| 74771 | | > select clear |
| 74772 | | |
| 74773 | | > select #61/Q:226 |
| 74774 | | |
| 74775 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 74776 | | |
| 74777 | | > show sel atoms |
| 74778 | | |
| 74779 | | > select #61/Q:223 |
| 74780 | | |
| 74781 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 74782 | | |
| 74783 | | > hide sel atoms |
| 74784 | | |
| 74785 | | > view view7 |
| 74786 | | |
| 74787 | | > show #!1 models |
| 74788 | | |
| 74789 | | > hide #!1 models |
| 74790 | | |
| 74791 | | > select #61/Q:224 |
| 74792 | | |
| 74793 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 74794 | | |
| 74795 | | > hide sel atoms |
| 74796 | | |
| 74797 | | > show #!1 models |
| 74798 | | |
| 74799 | | > view view7 |
| 74800 | | |
| 74801 | | > save zoomed_view_GOLPH3_zewta.png supersample 3 transparentBackground true |
| 74802 | | |
| 74803 | | [Repeated 1 time(s)] |
| 74804 | | |
| 74805 | | > cd "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 74806 | | > paper/Figures/2024_Nov/Figure4" |
| 74807 | | |
| 74808 | | Current working directory is: /Users/becca/Desktop/Postdoc/Grants and paper |
| 74809 | | drafts/Golph3 paper/Figures/2024_Nov/Figure4 |
| 74810 | | |
| 74811 | | > save zoomed_view_GOLPH3_zeta.png supersample 3 transparentBackground true |
| 74812 | | |
| 74813 | | > select clear |
| 74814 | | |
| 74815 | | > save zoomed_view_GOLPH3_zeta_v2.png supersample 3 transparentBackground true |
| 74816 | | |
| 74817 | | [Repeated 1 time(s)] |
| 74818 | | |
| 74819 | | > hide #!1 models |
| 74820 | | |
| 74821 | | > view view5 |
| 74822 | | |
| 74823 | | > show #!1 models |
| 74824 | | |
| 74825 | | > volume #1 level 0.008 |
| 74826 | | |
| 74827 | | > hide #!1 models |
| 74828 | | |
| 74829 | | > select #61/A:14 |
| 74830 | | |
| 74831 | | 11 atoms, 10 bonds, 1 residue, 1 model selected |
| 74832 | | |
| 74833 | | > show sel atoms |
| 74834 | | |
| 74835 | | > style sel stick |
| 74836 | | |
| 74837 | | Changed 11 atom styles |
| 74838 | | |
| 74839 | | > color sel byhetero |
| 74840 | | |
| 74841 | | > select clear |
| 74842 | | |
| 74843 | | > select #61/A:14 |
| 74844 | | |
| 74845 | | 11 atoms, 10 bonds, 1 residue, 1 model selected |
| 74846 | | |
| 74847 | | > hide sel atoms |
| 74848 | | |
| 74849 | | > select clear |
| 74850 | | |
| 74851 | | > show #!1 models |
| 74852 | | |
| 74853 | | > save zoomed_view_GOLPH3_beta_gamma.png supersample 3 transparentBackground |
| 74854 | | > true |
| 74855 | | |
| 74856 | | > hide #!1 models |
| 74857 | | |
| 74858 | | > select #61/A:14 |
| 74859 | | |
| 74860 | | 11 atoms, 10 bonds, 1 residue, 1 model selected |
| 74861 | | |
| 74862 | | > show sel atoms |
| 74863 | | |
| 74864 | | > select #61/L:445 |
| 74865 | | |
| 74866 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 74867 | | |
| 74868 | | > show sel atoms |
| 74869 | | |
| 74870 | | > color sel byhetero |
| 74871 | | |
| 74872 | | > select #61/L:447 |
| 74873 | | |
| 74874 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 74875 | | |
| 74876 | | > color sel byhetero |
| 74877 | | |
| 74878 | | > show sel atoms |
| 74879 | | |
| 74880 | | > show #!1 models |
| 74881 | | |
| 74882 | | > select clear |
| 74883 | | |
| 74884 | | > volume #1 level 0.007 |
| 74885 | | |
| 74886 | | > volume #1 level 0.008 |
| 74887 | | |
| 74888 | | > save zoomed_view_GOLPH3_gamma_sticks.png supersample 3 transparentBackground |
| 74889 | | > true |
| 74890 | | |
| 74891 | | > view view7 |
| 74892 | | |
| 74893 | | > hide #!1 models |
| 74894 | | |
| 74895 | | > select #61/Q:228 |
| 74896 | | |
| 74897 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 74898 | | |
| 74899 | | > view view7 |
| 74900 | | |
| 74901 | | > view view1 |
| 74902 | | |
| 74903 | | > show #!1 models |
| 74904 | | |
| 74905 | | > volume #1 level 0.005 |
| 74906 | | |
| 74907 | | > volume #1 level 0.008 |
| 74908 | | |
| 74909 | | > volume #1 level 0.005 |
| 74910 | | |
| 74911 | | > volume #1 level 0.008 |
| 74912 | | |
| 74913 | | > volume #1 level 0.007 |
| 74914 | | |
| 74915 | | > volume #1 level 0.006 |
| 74916 | | |
| 74917 | | > volume #1 level 0.005 |
| 74918 | | |
| 74919 | | > volume #1 level 0.004 |
| 74920 | | |
| 74921 | | > volume #1 level 0.008 |
| 74922 | | |
| 74923 | | > volume #1 level 0.007 |
| 74924 | | |
| 74925 | | > volume #1 level 0.006 |
| 74926 | | |
| 74927 | | > lighting simple |
| 74928 | | |
| 74929 | | > volume #1 level 0.004772 |
| 74930 | | |
| 74931 | | > volume #1 level 0.00428 |
| 74932 | | |
| 74933 | | > view view13 |
| 74934 | | |
| 74935 | | > select add #61 |
| 74936 | | |
| 74937 | | 34068 atoms, 34686 bonds, 4 pseudobonds, 4274 residues, 2 models selected |
| 74938 | | |
| 74939 | | > select subtract #61 |
| 74940 | | |
| 74941 | | Nothing selected |
| 74942 | | |
| 74943 | | > hide #!61 models |
| 74944 | | |
| 74945 | | > show #55 models |
| 74946 | | |
| 74947 | | > show #!61 models |
| 74948 | | |
| 74949 | | > view view13 |
| 74950 | | |
| 74951 | | > volume #1 level 0.004 |
| 74952 | | |
| 74953 | | > volume #1 level 0.007 |
| 74954 | | |
| 74955 | | > view view5 |
| 74956 | | |
| 74957 | | > volume #1 level 0.008 |
| 74958 | | |
| 74959 | | > volume #1 level 0.007 |
| 74960 | | |
| 74961 | | > volume #1 level 0.008 |
| 74962 | | |
| 74963 | | > volume #1 level 0.005 |
| 74964 | | |
| 74965 | | > volume #1 level 0.008 |
| 74966 | | |
| 74967 | | > volume #1 level 0.005 |
| 74968 | | |
| 74969 | | > volume #1 level 0.008 |
| 74970 | | |
| 74971 | | > volume #1 level 0.005 |
| 74972 | | |
| 74973 | | > view view13 |
| 74974 | | |
| 74975 | | > view view14 |
| 74976 | | |
| 74977 | | > view view15 |
| 74978 | | |
| 74979 | | > view view16 |
| 74980 | | |
| 74981 | | > view view5 |
| 74982 | | |
| 74983 | | > volume #1 level 0.004 |
| 74984 | | |
| 74985 | | > volume #1 level 0.005 |
| 74986 | | |
| 74987 | | > view view5 |
| 74988 | | |
| 74989 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 74990 | | > paper/Figures/2024_Nov/20241125_chimera_for_figures.cxs" |
| 74991 | | |
| 74992 | | ——— End of log from Tue Nov 26 17:24:46 2024 ——— |
| 74993 | | |
| 74994 | | opened ChimeraX session |
| 74995 | | |
| 74996 | | > close #25 |
| 74997 | | |
| 74998 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 74999 | | > paper/Chimera sessions/20241205_chimera_for_figures.cxs" |
| 75000 | | |
| 75001 | | > color #34.7 deltav3 |
| 75002 | | |
| 75003 | | > color #34.6 betapv3 |
| 75004 | | |
| 75005 | | > color #34.1 label_purple_v3 |
| 75006 | | |
| 75007 | | > color #34.2 arf1v3 |
| 75008 | | |
| 75009 | | > color #34.3 arf1v3 |
| 75010 | | |
| 75011 | | > color #34.4 alphav3 |
| 75012 | | |
| 75013 | | > color #34.5 betav3 |
| 75014 | | |
| 75015 | | > color #34.8 gammav3 |
| 75016 | | |
| 75017 | | > color #34.9 zetav3 |
| 75018 | | |
| 75019 | | > show #!63 models |
| 75020 | | |
| 75021 | | > close #63 |
| 75022 | | |
| 75023 | | > hide #55 models |
| 75024 | | |
| 75025 | | > select add #61 |
| 75026 | | |
| 75027 | | 34068 atoms, 34686 bonds, 4 pseudobonds, 4274 residues, 2 models selected |
| 75028 | | |
| 75029 | | > hide sel atoms |
| 75030 | | |
| 75031 | | > select subtract #61 |
| 75032 | | |
| 75033 | | Nothing selected |
| 75034 | | |
| 75035 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 75036 | | > dataset/Structure |
| 75037 | | > files/triad_maps/PostProcess_jobs_triad/job007/postprocess.mrc" |
| 75038 | | |
| 75039 | | Opened postprocess.mrc as #2, grid size 168,168,168, pixel 3.4, shown at level |
| 75040 | | 0.444, step 1, values float32 |
| 75041 | | |
| 75042 | | > rename #2 postprocess_Job007.mrc |
| 75043 | | |
| 75044 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 75045 | | QTBUG which explains how to reproduce. |
| 75046 | | |
| 75047 | | > select add #2 |
| 75048 | | |
| 75049 | | 3 models selected |
| 75050 | | |
| 75051 | | > ui tool show "Fit in Map" |
| 75052 | | |
| 75053 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 75054 | | QTBUG which explains how to reproduce. |
| 75055 | | |
| 75056 | | > ui mousemode right "translate selected models" |
| 75057 | | |
| 75058 | | > view matrix models #2,1,0,0,85.518,0,1,0,17.822,0,0,1,2.9893 |
| 75059 | | |
| 75060 | | > view matrix models #2,1,0,0,86.067,0,1,0,10.018,0,0,1,33.918 |
| 75061 | | |
| 75062 | | > fitmap #2 inMap #1 |
| 75063 | | |
| 75064 | | Fit map postprocess_Job007.mrc in map relion_locres_filtered_20240326_GT.mrc |
| 75065 | | using 47389 points |
| 75066 | | correlation = 0.6617, correlation about mean = 0.09379, overlap = 140.4 |
| 75067 | | steps = 208, shift = 17.7, angle = 1.3 degrees |
| 75068 | | |
| 75069 | | Position of postprocess_Job007.mrc (#2) relative to |
| 75070 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 75071 | | Matrix rotation and translation |
| 75072 | | 0.99961609 0.02685646 0.00681134 21.30398251 |
| 75073 | | -0.02683990 0.99963659 -0.00251087 -42.93824408 |
| 75074 | | -0.00687630 0.00232709 0.99997365 -45.50793715 |
| 75075 | | Axis 0.08697568 0.24607334 -0.96534095 |
| 75076 | | Axis point -1913.10687737 -706.54715947 0.00000000 |
| 75077 | | Rotation angle (degrees) 1.59372282 |
| 75078 | | Shift along axis 35.21764648 |
| 75079 | | |
| 75080 | | |
| 75081 | | > select subtract #2 |
| 75082 | | |
| 75083 | | Nothing selected |
| 75084 | | |
| 75085 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 75086 | | > dataset/Structure |
| 75087 | | > files/triad_maps/PostProcess_jobs_triad/job020/postprocess.mrc" |
| 75088 | | |
| 75089 | | Opened postprocess.mrc as #3, grid size 192,192,192, pixel 2.55, shown at |
| 75090 | | level 0.418, step 1, values float32 |
| 75091 | | |
| 75092 | | > rename #3 postprocess_job020.mrc |
| 75093 | | |
| 75094 | | > rename #2 postprocess_job007.mrc |
| 75095 | | |
| 75096 | | > color #2 darkgrey models |
| 75097 | | |
| 75098 | | > color #3 darkgrey models |
| 75099 | | |
| 75100 | | > select add #3 |
| 75101 | | |
| 75102 | | 3 models selected |
| 75103 | | |
| 75104 | | > view matrix models #3,1,0,0,139.21,0,1,0,29.447,0,0,1,105.22 |
| 75105 | | |
| 75106 | | > view matrix models #3,1,0,0,132.07,0,1,0,63.597,0,0,1,111.56 |
| 75107 | | |
| 75108 | | > view matrix models #3,1,0,0,133.35,0,1,0,65.017,0,0,1,80.128 |
| 75109 | | |
| 75110 | | > fitmap #3 inMap #1 |
| 75111 | | |
| 75112 | | Fit map postprocess_job020.mrc in map relion_locres_filtered_20240326_GT.mrc |
| 75113 | | using 70711 points |
| 75114 | | correlation = 0.673, correlation about mean = 0.2053, overlap = 223.4 |
| 75115 | | steps = 100, shift = 2.56, angle = 1.12 degrees |
| 75116 | | |
| 75117 | | Position of postprocess_job020.mrc (#3) relative to |
| 75118 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 75119 | | Matrix rotation and translation |
| 75120 | | 0.99982096 0.01869065 0.00295051 66.72655942 |
| 75121 | | -0.01867161 0.99980548 -0.00635403 -4.33531835 |
| 75122 | | -0.00306869 0.00629781 0.99997546 1.61389820 |
| 75123 | | Axis 0.31706595 0.15084630 -0.93633038 |
| 75124 | | Axis point -351.74783206 -3251.24790324 0.00000000 |
| 75125 | | Rotation angle (degrees) 1.14320869 |
| 75126 | | Shift along axis 18.99161156 |
| 75127 | | |
| 75128 | | |
| 75129 | | > select subtract #3 |
| 75130 | | |
| 75131 | | Nothing selected |
| 75132 | | |
| 75133 | | > hide #!3 models |
| 75134 | | |
| 75135 | | > hide #!2 models |
| 75136 | | |
| 75137 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 75138 | | > dataset/Structure |
| 75139 | | > files/triad_maps/warp_golph1_0fa461e3_zRYs2B7/copi_triad_bin15_filtlocal.mrc" |
| 75140 | | |
| 75141 | | Opened copi_triad_bin15_filtlocal.mrc as #4, grid size 236,236,236, pixel |
| 75142 | | 2.55, shown at level 0.00174, step 1, values float32 |
| 75143 | | |
| 75144 | | > close #4 |
| 75145 | | |
| 75146 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 75147 | | > dataset/Structure |
| 75148 | | > files/triad_maps/warp_golph1_0fa461e3_zRYs2B7/copi_triad_bin15_localres.mrc" |
| 75149 | | |
| 75150 | | Opened copi_triad_bin15_localres.mrc as #4, grid size 236,236,236, pixel 2.55, |
| 75151 | | shown at level 76.5, step 1, values float32 |
| 75152 | | |
| 75153 | | > select add #4 |
| 75154 | | |
| 75155 | | 2 models selected |
| 75156 | | |
| 75157 | | > close #4 |
| 75158 | | |
| 75159 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 75160 | | > dataset/Structure |
| 75161 | | > files/triad_maps/warp_golph1_0fa461e3_zRYs2B7/copi_triad_bin15_filt.mrc" |
| 75162 | | |
| 75163 | | Opened copi_triad_bin15_filt.mrc as #4, grid size 236,236,236, pixel 2.55, |
| 75164 | | shown at level 0.00514, step 1, values float32 |
| 75165 | | |
| 75166 | | > color #4 darkgrey models |
| 75167 | | |
| 75168 | | > select add #4 |
| 75169 | | |
| 75170 | | 3 models selected |
| 75171 | | |
| 75172 | | > view matrix models #4,1,0,0,71.083,0,1,0,14.206,0,0,1,26.687 |
| 75173 | | |
| 75174 | | > view matrix models #4,1,0,0,68.581,0,1,0,13.297,0,0,1,32.288 |
| 75175 | | |
| 75176 | | > fitmap #4 inMap #1 |
| 75177 | | |
| 75178 | | Fit map copi_triad_bin15_filt.mrc in map |
| 75179 | | relion_locres_filtered_20240326_GT.mrc using 131408 points |
| 75180 | | correlation = 0.7186, correlation about mean = 0.302, overlap = 4.84 |
| 75181 | | steps = 2000, shift = 14.9, angle = 1.23 degrees |
| 75182 | | |
| 75183 | | Position of copi_triad_bin15_filt.mrc (#4) relative to |
| 75184 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 75185 | | Matrix rotation and translation |
| 75186 | | 0.99987460 0.01452611 0.00630740 9.76363422 |
| 75187 | | -0.01447795 0.99986619 -0.00761538 -59.87785304 |
| 75188 | | -0.00641717 0.00752311 0.99995111 -54.34426694 |
| 75189 | | Axis 0.43124119 0.36247726 -0.82622108 |
| 75190 | | Axis point -4822.88364561 99.84585173 0.00000000 |
| 75191 | | Rotation angle (degrees) 1.00572061 |
| 75192 | | Shift along axis 27.40650026 |
| 75193 | | |
| 75194 | | |
| 75195 | | > select subtract #4 |
| 75196 | | |
| 75197 | | Nothing selected |
| 75198 | | |
| 75199 | | > hide #!4 models |
| 75200 | | |
| 75201 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 75202 | | > dataset/Structure |
| 75203 | | > files/leaf_maps/LocalRes_jobs_leaf/job073/relion_locres.mrc" |
| 75204 | | |
| 75205 | | Opened relion_locres.mrc as #5, grid size 292,292,292, pixel 1.71, shown at |
| 75206 | | level 22.7, step 2, values float32 |
| 75207 | | |
| 75208 | | > close #5 |
| 75209 | | |
| 75210 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 75211 | | > dataset/Structure |
| 75212 | | > files/leaf_maps/LocalRes_jobs_leaf/job073/relion_locres_filtered.mrc" |
| 75213 | | |
| 75214 | | Opened relion_locres_filtered.mrc as #5, grid size 292,292,292, pixel 1.71, |
| 75215 | | shown at level 0.00473, step 2, values float32 |
| 75216 | | |
| 75217 | | > rename #5 relion_locres_filtered_job073.mrc |
| 75218 | | |
| 75219 | | > color #5 white models |
| 75220 | | |
| 75221 | | > ui tool show "Side View" |
| 75222 | | |
| 75223 | | > select add #5 |
| 75224 | | |
| 75225 | | 3 models selected |
| 75226 | | |
| 75227 | | > view matrix models #5,1,0,0,66.488,0,1,0,-6.5187,0,0,1,63.773 |
| 75228 | | |
| 75229 | | > view matrix models #5,1,0,0,63.271,0,1,0,59.229,0,0,1,36.318 |
| 75230 | | |
| 75231 | | > view matrix models #5,1,0,0,59.062,0,1,0,60.156,0,0,1,74.822 |
| 75232 | | |
| 75233 | | > view matrix models #5,1,0,0,61.913,0,1,0,66.466,0,0,1,70.919 |
| 75234 | | |
| 75235 | | > fitmap #5 inMap #1 |
| 75236 | | |
| 75237 | | Fit map relion_locres_filtered_job073.mrc in map |
| 75238 | | relion_locres_filtered_20240326_GT.mrc using 30984 points |
| 75239 | | correlation = 0.612, correlation about mean = 0.1179, overlap = 1.264 |
| 75240 | | steps = 248, shift = 6.59, angle = 2.77 degrees |
| 75241 | | |
| 75242 | | Position of relion_locres_filtered_job073.mrc (#5) relative to |
| 75243 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 75244 | | Matrix rotation and translation |
| 75245 | | 0.99901472 0.01605825 -0.04137297 0.29768430 |
| 75246 | | -0.01430120 0.99899751 0.04242001 -14.81329190 |
| 75247 | | 0.04201269 -0.04178654 0.99824287 -3.54485385 |
| 75248 | | Axis -0.68833316 -0.68162292 -0.24816859 |
| 75249 | | Axis point 0.00000000 -28.23632095 175.45054787 |
| 75250 | | Rotation angle (degrees) 3.50680006 |
| 75251 | | Shift along axis 10.77189469 |
| 75252 | | |
| 75253 | | |
| 75254 | | > color #5 #ebebebff models |
| 75255 | | |
| 75256 | | > color #5 #d6d6d6ff models |
| 75257 | | |
| 75258 | | > select subtract #5 |
| 75259 | | |
| 75260 | | Nothing selected |
| 75261 | | |
| 75262 | | > select add #5 |
| 75263 | | |
| 75264 | | 3 models selected |
| 75265 | | |
| 75266 | | > view matrix models |
| 75267 | | > #5,0.99934,0.0033358,-0.036199,74.527,-0.0021812,0.99949,0.031889,66.076,0.036287,-0.031789,0.99884,73.919 |
| 75268 | | |
| 75269 | | > fitmap #5 inMap #1 |
| 75270 | | |
| 75271 | | Fit map relion_locres_filtered_job073.mrc in map |
| 75272 | | relion_locres_filtered_20240326_GT.mrc using 30984 points |
| 75273 | | correlation = 0.9693, correlation about mean = 0.935, overlap = 2.725 |
| 75274 | | steps = 252, shift = 4.19, angle = 3.5 degrees |
| 75275 | | |
| 75276 | | Position of relion_locres_filtered_job073.mrc (#5) relative to |
| 75277 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 75278 | | Matrix rotation and translation |
| 75279 | | 0.99999982 0.00022578 -0.00054845 0.18894543 |
| 75280 | | -0.00022602 0.99999987 -0.00045427 0.14279949 |
| 75281 | | 0.00054834 0.00045439 0.99999975 -0.23002638 |
| 75282 | | Axis 0.60811253 -0.73401410 -0.30236144 |
| 75283 | | Axis point 375.69970118 0.00000000 256.09147125 |
| 75284 | | Rotation angle (degrees) 0.04280678 |
| 75285 | | Shift along axis 0.07963435 |
| 75286 | | |
| 75287 | | |
| 75288 | | > select subtract #5 |
| 75289 | | |
| 75290 | | Nothing selected |
| 75291 | | |
| 75292 | | > hide #!5 models |
| 75293 | | |
| 75294 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 75295 | | > dataset/Structure |
| 75296 | | > files/leaf_maps/LocalRes_jobs_leaf/job076/relion_locres_filtered.mrc" |
| 75297 | | |
| 75298 | | Opened relion_locres_filtered.mrc as #6, grid size 292,292,292, pixel 1.71, |
| 75299 | | shown at level 0.00472, step 2, values float32 |
| 75300 | | |
| 75301 | | > color #6 #d6d6d6ff models |
| 75302 | | |
| 75303 | | > select add #6 |
| 75304 | | |
| 75305 | | 2 models selected |
| 75306 | | |
| 75307 | | > view matrix models #6,1,0,0,67.57,0,1,0,-12.757,0,0,1,47.928 |
| 75308 | | |
| 75309 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 75310 | | QTBUG which explains how to reproduce. |
| 75311 | | |
| 75312 | | > volume #5 step 1 |
| 75313 | | |
| 75314 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 75315 | | QTBUG which explains how to reproduce. |
| 75316 | | |
| 75317 | | > volume #6 step 1 |
| 75318 | | |
| 75319 | | > view matrix models #6,1,0,0,52.896,0,1,0,4.7126,0,0,1,20.921 |
| 75320 | | |
| 75321 | | > view matrix models #6,1,0,0,76.925,0,1,0,5.2591,0,0,1,71.259 |
| 75322 | | |
| 75323 | | > view matrix models #6,1,0,0,68.9,0,1,0,41.073,0,0,1,41.333 |
| 75324 | | |
| 75325 | | > fitmap #6 inMap #1 |
| 75326 | | |
| 75327 | | Fit map relion_locres_filtered.mrc in map |
| 75328 | | relion_locres_filtered_20240326_GT.mrc using 247109 points |
| 75329 | | correlation = 0.6616, correlation about mean = 0.09827, overlap = 7.372 |
| 75330 | | steps = 1072, shift = 25.5, angle = 6.01 degrees |
| 75331 | | |
| 75332 | | Position of relion_locres_filtered.mrc (#6) relative to |
| 75333 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 75334 | | Matrix rotation and translation |
| 75335 | | 0.99585149 -0.08701697 0.02660563 37.75114937 |
| 75336 | | 0.08687846 0.99619887 0.00632087 -42.57308456 |
| 75337 | | -0.02705452 -0.00398320 0.99962602 -25.98016552 |
| 75338 | | Axis -0.05652947 0.29438656 0.95401309 |
| 75339 | | Axis point 373.42745615 390.40379547 0.00000000 |
| 75340 | | Rotation angle (degrees) 5.22913130 |
| 75341 | | Shift along axis -39.45241432 |
| 75342 | | |
| 75343 | | |
| 75344 | | > rename #6 relion_locres_filtered_job076.mrc |
| 75345 | | |
| 75346 | | > select subtract #6 |
| 75347 | | |
| 75348 | | Nothing selected |
| 75349 | | |
| 75350 | | > select add #6 |
| 75351 | | |
| 75352 | | 2 models selected |
| 75353 | | |
| 75354 | | > view matrix models |
| 75355 | | > #6,0.99452,-0.099479,0.032232,65.638,0.099638,0.99502,-0.0033661,39.873,-0.031737,0.0065592,0.99947,58.383 |
| 75356 | | |
| 75357 | | > view matrix models |
| 75358 | | > #6,0.99452,-0.099479,0.032232,85.597,0.099638,0.99502,-0.0033661,46.691,-0.031737,0.0065592,0.99947,67.339 |
| 75359 | | |
| 75360 | | > view matrix models |
| 75361 | | > #6,0.99452,-0.099479,0.032232,86.715,0.099638,0.99502,-0.0033661,44.967,-0.031737,0.0065592,0.99947,76.05 |
| 75362 | | |
| 75363 | | > view matrix models |
| 75364 | | > #6,0.99452,-0.099479,0.032232,87.045,0.099638,0.99502,-0.0033661,44.466,-0.031737,0.0065592,0.99947,77.127 |
| 75365 | | |
| 75366 | | > fitmap #6 inMap #1 |
| 75367 | | |
| 75368 | | Fit map relion_locres_filtered_job076.mrc in map |
| 75369 | | relion_locres_filtered_20240326_GT.mrc using 247109 points |
| 75370 | | correlation = 0.9821, correlation about mean = 0.9628, overlap = 22.84 |
| 75371 | | steps = 276, shift = 11, angle = 5.26 degrees |
| 75372 | | |
| 75373 | | Position of relion_locres_filtered_job076.mrc (#6) relative to |
| 75374 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 75375 | | Matrix rotation and translation |
| 75376 | | 0.99999989 0.00039812 -0.00024727 0.01096911 |
| 75377 | | -0.00039820 0.99999986 -0.00036216 0.16657338 |
| 75378 | | 0.00024712 0.00036226 0.99999990 -0.14269262 |
| 75379 | | Axis 0.61152126 -0.41733637 -0.67221433 |
| 75380 | | Axis point 453.00376354 23.43179167 0.00000000 |
| 75381 | | Rotation angle (degrees) 0.03393694 |
| 75382 | | Shift along axis 0.03311074 |
| 75383 | | |
| 75384 | | |
| 75385 | | > select subtract #6 |
| 75386 | | |
| 75387 | | Nothing selected |
| 75388 | | |
| 75389 | | > hide #!6 models |
| 75390 | | |
| 75391 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 75392 | | > dataset/Structure |
| 75393 | | > files/leaf_maps/LocalRes_jobs_leaf/job092/relion_locres_filtered.mrc" |
| 75394 | | |
| 75395 | | Opened relion_locres_filtered.mrc as #7, grid size 292,292,292, pixel 1.71, |
| 75396 | | shown at level 0.00475, step 2, values float32 |
| 75397 | | |
| 75398 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 75399 | | QTBUG which explains how to reproduce. |
| 75400 | | |
| 75401 | | > volume #7 step 1 |
| 75402 | | |
| 75403 | | > select add #7 |
| 75404 | | |
| 75405 | | 2 models selected |
| 75406 | | |
| 75407 | | > color #7 #d6d6d6ff models |
| 75408 | | |
| 75409 | | > view matrix models #7,1,0,0,38.065,0,1,0,-12.059,0,0,1,16.407 |
| 75410 | | |
| 75411 | | > view matrix models #7,1,0,0,52.975,0,1,0,30.61,0,0,1,-4.7727 |
| 75412 | | |
| 75413 | | > view matrix models #7,1,0,0,63.649,0,1,0,12.843,0,0,1,55.739 |
| 75414 | | |
| 75415 | | > view matrix models #7,1,0,0,70.832,0,1,0,50.812,0,0,1,37.274 |
| 75416 | | |
| 75417 | | > view matrix models #7,1,0,0,65.873,0,1,0,48.543,0,0,1,77.337 |
| 75418 | | |
| 75419 | | > view matrix models #7,1,0,0,65.632,0,1,0,65.521,0,0,1,65.665 |
| 75420 | | |
| 75421 | | > fitmap #7 inMap #1 |
| 75422 | | |
| 75423 | | Fit map relion_locres_filtered.mrc in map |
| 75424 | | relion_locres_filtered_20240326_GT.mrc using 247574 points |
| 75425 | | correlation = 0.5905, correlation about mean = 0.1726, overlap = 12.19 |
| 75426 | | steps = 244, shift = 8.84, angle = 5.26 degrees |
| 75427 | | |
| 75428 | | Position of relion_locres_filtered.mrc (#7) relative to |
| 75429 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 75430 | | Matrix rotation and translation |
| 75431 | | 0.99452520 0.07764528 -0.06993451 -2.40526436 |
| 75432 | | -0.07666597 0.99691890 0.01658431 10.16709514 |
| 75433 | | 0.07100672 -0.01113192 0.99741372 -21.39414966 |
| 75434 | | Axis -0.13146942 -0.66854192 -0.73196140 |
| 75435 | | Axis point 211.43672081 30.34452054 0.00000000 |
| 75436 | | Rotation angle (degrees) 6.05075542 |
| 75437 | | Shift along axis 9.17878107 |
| 75438 | | |
| 75439 | | |
| 75440 | | > view matrix models |
| 75441 | | > #7,0.99579,0.065118,-0.06444,72.935,-0.064885,0.99788,0.0057064,85.215,0.064675,-0.0015013,0.99791,60.46 |
| 75442 | | |
| 75443 | | > view matrix models |
| 75444 | | > #7,0.99579,0.065118,-0.06444,65.036,-0.064885,0.99788,0.0057064,87.224,0.064675,-0.0015013,0.99791,65.95 |
| 75445 | | |
| 75446 | | > fitmap #7 inMap #1 |
| 75447 | | |
| 75448 | | Fit map relion_locres_filtered.mrc in map |
| 75449 | | relion_locres_filtered_20240326_GT.mrc using 247574 points |
| 75450 | | correlation = 0.9988, correlation about mean = 0.999, overlap = 29.15 |
| 75451 | | steps = 312, shift = 10.3, angle = 6.05 degrees |
| 75452 | | |
| 75453 | | Position of relion_locres_filtered.mrc (#7) relative to |
| 75454 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 75455 | | Matrix rotation and translation |
| 75456 | | 0.99999999 0.00011895 0.00000474 -0.04090281 |
| 75457 | | -0.00011896 0.99999999 0.00002187 0.02807745 |
| 75458 | | -0.00000474 -0.00002187 1.00000000 0.00866200 |
| 75459 | | Axis -0.18068999 0.03914603 -0.98276076 |
| 75460 | | Axis point 236.02056631 343.90013324 0.00000000 |
| 75461 | | Rotation angle (degrees) 0.00693517 |
| 75462 | | Shift along axis -0.00002282 |
| 75463 | | |
| 75464 | | |
| 75465 | | > select subtract #7 |
| 75466 | | |
| 75467 | | Nothing selected |
| 75468 | | |
| 75469 | | > rename #7 relion_locres_filtered_job092.mrc |
| 75470 | | |
| 75471 | | > hide #!7 models |
| 75472 | | |
| 75473 | | > ui tool show "Map Filter" |
| 75474 | | |
| 75475 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 75476 | | > dataset/Structure files/leaf_maps/postprocess/postprocess_20231221_GT.mrc" |
| 75477 | | |
| 75478 | | Opened postprocess_20231221_GT.mrc as #8, grid size 156,156,156, pixel 2.55, |
| 75479 | | shown at level 0.00309, step 1, values float32 |
| 75480 | | |
| 75481 | | > volume #8 level 0.004179 |
| 75482 | | |
| 75483 | | > color #8 #d6d6d6ff models |
| 75484 | | |
| 75485 | | > select add #8 |
| 75486 | | |
| 75487 | | 2 models selected |
| 75488 | | |
| 75489 | | > view matrix models #8,1,0,0,78.937,0,1,0,7.9934,0,0,1,135.72 |
| 75490 | | |
| 75491 | | > view matrix models #8,1,0,0,101.76,0,1,0,86.877,0,0,1,77.054 |
| 75492 | | |
| 75493 | | > view matrix models #8,1,0,0,106.53,0,1,0,97.616,0,0,1,123.96 |
| 75494 | | |
| 75495 | | > view matrix models #8,1,0,0,101.97,0,1,0,113.7,0,0,1,114.45 |
| 75496 | | |
| 75497 | | > view matrix models #8,1,0,0,103.97,0,1,0,116.55,0,0,1,119.71 |
| 75498 | | |
| 75499 | | > view matrix models #8,1,0,0,102.28,0,1,0,112.57,0,0,1,119.97 |
| 75500 | | |
| 75501 | | > fitmap #8 inMap #1 |
| 75502 | | |
| 75503 | | Fit map postprocess_20231221_GT.mrc in map |
| 75504 | | relion_locres_filtered_20240326_GT.mrc using 14066 points |
| 75505 | | correlation = 0.4926, correlation about mean = 0.08949, overlap = 0.667 |
| 75506 | | steps = 100, shift = 3.47, angle = 4.09 degrees |
| 75507 | | |
| 75508 | | Position of postprocess_20231221_GT.mrc (#8) relative to |
| 75509 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 75510 | | Matrix rotation and translation |
| 75511 | | 0.99847523 -0.00199571 0.05516553 27.66729011 |
| 75512 | | -0.00047863 0.99899570 0.04480353 26.46732641 |
| 75513 | | -0.05519955 -0.04476162 0.99747151 61.56318660 |
| 75514 | | Axis -0.63010538 0.77643628 0.01067289 |
| 75515 | | Axis point 1138.06165586 0.00000000 -513.18250710 |
| 75516 | | Rotation angle (degrees) 4.07553649 |
| 75517 | | Shift along axis 3.77394153 |
| 75518 | | |
| 75519 | | |
| 75520 | | > hide #!61 models |
| 75521 | | |
| 75522 | | > view matrix models |
| 75523 | | > #8,0.99807,-0.014733,0.060296,98.12,0.012607,0.99929,0.035492,201.27,-0.060776,-0.034663,0.99755,92.172 |
| 75524 | | |
| 75525 | | > view matrix models |
| 75526 | | > #8,0.99807,-0.014733,0.060296,86.042,0.012607,0.99929,0.035492,113.27,-0.060776,-0.034663,0.99755,148.26 |
| 75527 | | |
| 75528 | | > view matrix models |
| 75529 | | > #8,0.99807,-0.014733,0.060296,83.263,0.012607,0.99929,0.035492,118.4,-0.060776,-0.034663,0.99755,143.82 |
| 75530 | | |
| 75531 | | > view matrix models |
| 75532 | | > #8,0.99807,-0.014733,0.060296,86.243,0.012607,0.99929,0.035492,117.11,-0.060776,-0.034663,0.99755,136.78 |
| 75533 | | |
| 75534 | | > view matrix models |
| 75535 | | > #8,0.99807,-0.014733,0.060296,88.196,0.012607,0.99929,0.035492,106.45,-0.060776,-0.034663,0.99755,136.02 |
| 75536 | | |
| 75537 | | > view matrix models |
| 75538 | | > #8,0.99807,-0.014733,0.060296,83.728,0.012607,0.99929,0.035492,102.71,-0.060776,-0.034663,0.99755,136.46 |
| 75539 | | |
| 75540 | | > fitmap #8 inMap #1 |
| 75541 | | |
| 75542 | | Fit map postprocess_20231221_GT.mrc in map |
| 75543 | | relion_locres_filtered_20240326_GT.mrc using 14066 points |
| 75544 | | correlation = 0.4753, correlation about mean = 0.04888, overlap = 0.6069 |
| 75545 | | steps = 108, shift = 4.86, angle = 6.68 degrees |
| 75546 | | |
| 75547 | | Position of postprocess_20231221_GT.mrc (#8) relative to |
| 75548 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 75549 | | Matrix rotation and translation |
| 75550 | | 0.99615024 0.08293147 0.02840902 12.42738276 |
| 75551 | | -0.08195656 0.99605860 -0.03391745 64.88533934 |
| 75552 | | -0.03110988 0.03145857 0.99902079 38.29946197 |
| 75553 | | Axis 0.34942668 0.31812106 -0.88130584 |
| 75554 | | Axis point 832.86855674 -148.13918880 0.00000000 |
| 75555 | | Rotation angle (degrees) 5.36772894 |
| 75556 | | Shift along axis -8.76968756 |
| 75557 | | |
| 75558 | | |
| 75559 | | > close #8 |
| 75560 | | |
| 75561 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 75562 | | > dataset/Structure |
| 75563 | | > files/leaf_maps/postprocess/relion_locres_filtered_20240325_GT.mrc" |
| 75564 | | |
| 75565 | | Opened relion_locres_filtered_20240325_GT.mrc as #8, grid size 292,292,292, |
| 75566 | | pixel 1.71, shown at level 0.00475, step 2, values float32 |
| 75567 | | |
| 75568 | | > select add #8 |
| 75569 | | |
| 75570 | | 2 models selected |
| 75571 | | |
| 75572 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 75573 | | QTBUG which explains how to reproduce. |
| 75574 | | |
| 75575 | | > volume #8 step 1 |
| 75576 | | |
| 75577 | | > view matrix models #8,1,0,0,61.822,0,1,0,56.673,0,0,1,-8.2657 |
| 75578 | | |
| 75579 | | > view matrix models #8,1,0,0,51.787,0,1,0,23.716,0,0,1,59.216 |
| 75580 | | |
| 75581 | | > view matrix models #8,1,0,0,66.634,0,1,0,76.608,0,0,1,67.94 |
| 75582 | | |
| 75583 | | > fitmap #8 inMap #1 |
| 75584 | | |
| 75585 | | Fit map relion_locres_filtered_20240325_GT.mrc in map |
| 75586 | | relion_locres_filtered_20240326_GT.mrc using 247574 points |
| 75587 | | correlation = 0.5888, correlation about mean = 0.1629, overlap = 12.12 |
| 75588 | | steps = 248, shift = 5.37, angle = 3.34 degrees |
| 75589 | | |
| 75590 | | Position of relion_locres_filtered_20240325_GT.mrc (#8) relative to |
| 75591 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 75592 | | Matrix rotation and translation |
| 75593 | | 0.99882556 -0.03262650 -0.03581922 23.17734087 |
| 75594 | | 0.03371471 0.99897484 0.03020893 -12.56581641 |
| 75595 | | 0.03479689 -0.03138109 0.99890160 -8.83249364 |
| 75596 | | Axis -0.53645606 -0.61507434 0.57783947 |
| 75597 | | Axis point 106.62763769 0.00000000 496.66893644 |
| 75598 | | Rotation angle (degrees) 3.29084677 |
| 75599 | | Shift along axis -9.80847706 |
| 75600 | | |
| 75601 | | |
| 75602 | | > view matrix models |
| 75603 | | > #8,0.99851,-0.045285,-0.030489,84.373,0.045898,0.99875,0.019743,57.068,0.029557,-0.021113,0.99934,75.228 |
| 75604 | | |
| 75605 | | > fitmap #8 inMap #1 |
| 75606 | | |
| 75607 | | Fit map relion_locres_filtered_20240325_GT.mrc in map |
| 75608 | | relion_locres_filtered_20240326_GT.mrc using 247574 points |
| 75609 | | correlation = 0.9989, correlation about mean = 0.999, overlap = 29.16 |
| 75610 | | steps = 120, shift = 3.8, angle = 3.29 degrees |
| 75611 | | |
| 75612 | | Position of relion_locres_filtered_20240325_GT.mrc (#8) relative to |
| 75613 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 75614 | | Matrix rotation and translation |
| 75615 | | 1.00000000 0.00003648 -0.00000951 -0.01463928 |
| 75616 | | -0.00003648 1.00000000 0.00000150 0.01249850 |
| 75617 | | 0.00000951 -0.00000150 1.00000000 -0.00088745 |
| 75618 | | Axis -0.03977166 -0.25207659 -0.96688966 |
| 75619 | | Axis point 330.78672655 403.16640634 0.00000000 |
| 75620 | | Rotation angle (degrees) 0.00216173 |
| 75621 | | Shift along axis -0.00171029 |
| 75622 | | |
| 75623 | | |
| 75624 | | > select subtract #8 |
| 75625 | | |
| 75626 | | Nothing selected |
| 75627 | | |
| 75628 | | > hide #!8 models |
| 75629 | | |
| 75630 | | > show #!7 models |
| 75631 | | |
| 75632 | | > hide #!7 models |
| 75633 | | |
| 75634 | | > show #!7 models |
| 75635 | | |
| 75636 | | > show #!8 models |
| 75637 | | |
| 75638 | | > hide #!8 models |
| 75639 | | |
| 75640 | | > hide #!7 models |
| 75641 | | |
| 75642 | | > color #8 #d6d6d6ff models |
| 75643 | | |
| 75644 | | > hide #!1 models |
| 75645 | | |
| 75646 | | > show #!2 models |
| 75647 | | |
| 75648 | | > volume #56 level 0.1787 |
| 75649 | | |
| 75650 | | > volume #2 level 0.3727 |
| 75651 | | |
| 75652 | | > hide #!2 models |
| 75653 | | |
| 75654 | | > show #!3 models |
| 75655 | | |
| 75656 | | > volume #3 level 0.2824 |
| 75657 | | |
| 75658 | | > hide #!3 models |
| 75659 | | |
| 75660 | | > show #!4 models |
| 75661 | | |
| 75662 | | > volume #3 level 0.2635 |
| 75663 | | |
| 75664 | | > hide #!3 models |
| 75665 | | |
| 75666 | | > hide #!4 models |
| 75667 | | |
| 75668 | | > show #!5 models |
| 75669 | | |
| 75670 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 75671 | | QTBUG which explains how to reproduce. |
| 75672 | | |
| 75673 | | > volume gaussian #5 sDev 2 |
| 75674 | | |
| 75675 | | Opened relion_locres_filtered_job073.mrc gaussian as #9, grid size |
| 75676 | | 292,292,292, pixel 1.71, shown at step 1, values float32 |
| 75677 | | |
| 75678 | | > color #9 #929292ff models |
| 75679 | | |
| 75680 | | > show #!5 models |
| 75681 | | |
| 75682 | | > hide #!9 models |
| 75683 | | |
| 75684 | | > hide #!5 models |
| 75685 | | |
| 75686 | | > show #!9 models |
| 75687 | | |
| 75688 | | > volume gaussian #5 sDev 2.5 modelId #9 |
| 75689 | | |
| 75690 | | Opened relion_locres_filtered_job073.mrc gaussian as #9, grid size |
| 75691 | | 292,292,292, pixel 1.71, shown at step 1, values float32 |
| 75692 | | |
| 75693 | | > volume #9 level 0.004726 |
| 75694 | | |
| 75695 | | > volume #9 level 0.004212 |
| 75696 | | |
| 75697 | | > volume #9 level 0.004566 |
| 75698 | | |
| 75699 | | > volume #9 level 0.004598 |
| 75700 | | |
| 75701 | | > volume gaussian #5 sDev 3 modelId #9 |
| 75702 | | |
| 75703 | | Opened relion_locres_filtered_job073.mrc gaussian as #9, grid size |
| 75704 | | 292,292,292, pixel 1.71, shown at step 1, values float32 |
| 75705 | | |
| 75706 | | > volume #9 level 0.00478 |
| 75707 | | |
| 75708 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 75709 | | > paper/Chimera sessions/20241205_chimera_for_figures.cxs" |
| 75710 | | |
| 75711 | | > volume gaussian #6 sDev 3 |
| 75712 | | |
| 75713 | | Opened relion_locres_filtered_job076.mrc gaussian as #10, grid size |
| 75714 | | 292,292,292, pixel 1.71, shown at step 1, values float32 |
| 75715 | | |
| 75716 | | > hide #!9 models |
| 75717 | | |
| 75718 | | > hide #!10 models |
| 75719 | | |
| 75720 | | > show #!10 models |
| 75721 | | |
| 75722 | | > show #!9 models |
| 75723 | | |
| 75724 | | > hide #!10 models |
| 75725 | | |
| 75726 | | > show #!10 models |
| 75727 | | |
| 75728 | | > hide #!10 models |
| 75729 | | |
| 75730 | | > show #!10 models |
| 75731 | | |
| 75732 | | > hide #!10 models |
| 75733 | | |
| 75734 | | > color #10 #929292ff models |
| 75735 | | |
| 75736 | | > show #!10 models |
| 75737 | | |
| 75738 | | > hide #!9 models |
| 75739 | | |
| 75740 | | > volume #10 level 0.004792 |
| 75741 | | |
| 75742 | | > volume #10 level 0.004842 |
| 75743 | | |
| 75744 | | > hide #!10 models |
| 75745 | | |
| 75746 | | > show #!8 models |
| 75747 | | |
| 75748 | | > volume gaussian #8 sDev 3 |
| 75749 | | |
| 75750 | | Opened relion_locres_filtered_20240325_GT.mrc gaussian as #11, grid size |
| 75751 | | 292,292,292, pixel 1.71, shown at step 1, values float32 |
| 75752 | | |
| 75753 | | > volume #11 level 0.004688 |
| 75754 | | |
| 75755 | | > volume gaussian #8 sDev 3.5 modelId #11 |
| 75756 | | |
| 75757 | | Opened relion_locres_filtered_20240325_GT.mrc gaussian as #11, grid size |
| 75758 | | 292,292,292, pixel 1.71, shown at step 1, values float32 |
| 75759 | | |
| 75760 | | > volume #11 level 0.004442 |
| 75761 | | |
| 75762 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 75763 | | QTBUG which explains how to reproduce. |
| 75764 | | |
| 75765 | | > volume #11 color #929292 |
| 75766 | | |
| 75767 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 75768 | | QTBUG which explains how to reproduce. |
| 75769 | | |
| 75770 | | [Repeated 1 time(s)] |
| 75771 | | |
| 75772 | | > color #11 #929292ff models |
| 75773 | | |
| 75774 | | > rename #9 "relion_locres_filtered_job073.mrc gaussian 3.00" |
| 75775 | | |
| 75776 | | > rename #10 "relion_locres_filtered_job076.mrc gaussian 3.00" |
| 75777 | | |
| 75778 | | > rename #11 "relion_locres_filtered_20240325_GT.mrc gaussian 3.50" |
| 75779 | | |
| 75780 | | > hide #!11 models |
| 75781 | | |
| 75782 | | > show #!1 models |
| 75783 | | |
| 75784 | | > hide #!9 models |
| 75785 | | |
| 75786 | | > volume #1 level 0.008 |
| 75787 | | |
| 75788 | | > hide #!1 models |
| 75789 | | |
| 75790 | | > show #!2 models |
| 75791 | | |
| 75792 | | > hide #!2 models |
| 75793 | | |
| 75794 | | > show #!3 models |
| 75795 | | |
| 75796 | | > volume #3 level 0.3092 |
| 75797 | | |
| 75798 | | > show #!1 models |
| 75799 | | |
| 75800 | | > hide #!1 models |
| 75801 | | |
| 75802 | | > show #!1 models |
| 75803 | | |
| 75804 | | > hide #!1 models |
| 75805 | | |
| 75806 | | > hide #!3 models |
| 75807 | | |
| 75808 | | > show #!1 models |
| 75809 | | |
| 75810 | | > volume #1 level 0.006 |
| 75811 | | |
| 75812 | | > show #!2 models |
| 75813 | | |
| 75814 | | > volume #2 level 0.3395 |
| 75815 | | |
| 75816 | | > volume #2 level 0.3648 |
| 75817 | | |
| 75818 | | > volume #2 level 0.35 |
| 75819 | | |
| 75820 | | > volume #2 level 0.36 |
| 75821 | | |
| 75822 | | > hide #!2 models |
| 75823 | | |
| 75824 | | > show #!3 models |
| 75825 | | |
| 75826 | | > volume #3 level 0.31 |
| 75827 | | |
| 75828 | | > volume #3 level 0.3 |
| 75829 | | |
| 75830 | | > volume #3 level 0.31 |
| 75831 | | |
| 75832 | | > volume #3 level 0.32 |
| 75833 | | |
| 75834 | | > volume #3 level 0.3 |
| 75835 | | |
| 75836 | | > volume gaussian #3 sDev 3.5 |
| 75837 | | |
| 75838 | | Opened postprocess_job020.mrc gaussian as #12, grid size 192,192,192, pixel |
| 75839 | | 2.55, shown at step 1, values float32 |
| 75840 | | |
| 75841 | | > volume #12 color #929292 |
| 75842 | | |
| 75843 | | > volume #12 level 0.3143 |
| 75844 | | |
| 75845 | | > color #12 #929292ff models |
| 75846 | | |
| 75847 | | > rename #12 "postprocess_job020.mrc gaussian 3.50" |
| 75848 | | |
| 75849 | | > hide #!12 models |
| 75850 | | |
| 75851 | | > show #!12 models |
| 75852 | | |
| 75853 | | > hide #!12 models |
| 75854 | | |
| 75855 | | > hide #!1 models |
| 75856 | | |
| 75857 | | > show #!2 models |
| 75858 | | |
| 75859 | | > show #!3 models |
| 75860 | | |
| 75861 | | > hide #!2 models |
| 75862 | | |
| 75863 | | > hide #!3 models |
| 75864 | | |
| 75865 | | > show #!3 models |
| 75866 | | |
| 75867 | | > hide #!3 models |
| 75868 | | |
| 75869 | | > show #!3 models |
| 75870 | | |
| 75871 | | > hide #!3 models |
| 75872 | | |
| 75873 | | > show #!4 models |
| 75874 | | |
| 75875 | | > volume #4 level 0.005 |
| 75876 | | |
| 75877 | | > volume #4 level 0.005704 |
| 75878 | | |
| 75879 | | > volume gaussian #4 sDev 3 |
| 75880 | | |
| 75881 | | Opened copi_triad_bin15_filt.mrc gaussian as #13, grid size 236,236,236, pixel |
| 75882 | | 2.55, shown at step 1, values float32 |
| 75883 | | |
| 75884 | | > volume #13 color #929292 |
| 75885 | | |
| 75886 | | > volume #13 level 0.005267 |
| 75887 | | |
| 75888 | | > volume #13 level 0.0053 |
| 75889 | | |
| 75890 | | > rename #13 "copi_triad_bin15_filt.mrc gaussian 3.00" |
| 75891 | | |
| 75892 | | > volume gaussian #4 sDev 1.5 modelId #13 |
| 75893 | | |
| 75894 | | Opened copi_triad_bin15_filt.mrc gaussian as #13, grid size 236,236,236, pixel |
| 75895 | | 2.55, shown at step 1, values float32 |
| 75896 | | |
| 75897 | | > hide #!13 models |
| 75898 | | |
| 75899 | | > show #!13 models |
| 75900 | | |
| 75901 | | > rename #13 "copi_triad_bin15_filt.mrc gaussian 1.5" |
| 75902 | | |
| 75903 | | > hide #!13 models |
| 75904 | | |
| 75905 | | > hide #!5 models |
| 75906 | | |
| 75907 | | > show #!5 models |
| 75908 | | |
| 75909 | | > volume #5 level 0.004635 |
| 75910 | | |
| 75911 | | > volume #5 level 0.005527 |
| 75912 | | |
| 75913 | | > volume #5 level 0.0055 |
| 75914 | | |
| 75915 | | > hide #!5 models |
| 75916 | | |
| 75917 | | > show #!5 models |
| 75918 | | |
| 75919 | | > volume #5 level 0.006 |
| 75920 | | |
| 75921 | | > volume #5 level 0.005 |
| 75922 | | |
| 75923 | | > volume #5 level 0.0047 |
| 75924 | | |
| 75925 | | > volume #5 level 0.0055 |
| 75926 | | |
| 75927 | | > hide #!5 models |
| 75928 | | |
| 75929 | | > show #!6 models |
| 75930 | | |
| 75931 | | > volume #6 level 0.0047 |
| 75932 | | |
| 75933 | | > volume #6 level 0.0048 |
| 75934 | | |
| 75935 | | > volume #6 level 0.0049 |
| 75936 | | |
| 75937 | | > volume #6 level 0.005 |
| 75938 | | |
| 75939 | | > volume #6 level 0.001 |
| 75940 | | |
| 75941 | | > volume #6 level 0.005 |
| 75942 | | |
| 75943 | | > volume #6 level 0.0051 |
| 75944 | | |
| 75945 | | > volume #6 level 0.0052 |
| 75946 | | |
| 75947 | | > volume #6 level 0.005 |
| 75948 | | |
| 75949 | | > volume #6 level 0.0054 |
| 75950 | | |
| 75951 | | > volume #6 level 0.0053 |
| 75952 | | |
| 75953 | | > volume #6 level 0.0054 |
| 75954 | | |
| 75955 | | > volume #6 level 0.0055 |
| 75956 | | |
| 75957 | | > volume #6 level 0.0054 |
| 75958 | | |
| 75959 | | > volume #6 level 0.0056 |
| 75960 | | |
| 75961 | | > volume #6 level 0.0057 |
| 75962 | | |
| 75963 | | > volume #6 level 0.0058 |
| 75964 | | |
| 75965 | | > volume #6 level 0.0057 |
| 75966 | | |
| 75967 | | > volume #6 level 0.0054 |
| 75968 | | |
| 75969 | | > volume #6 level 0.0047 |
| 75970 | | |
| 75971 | | > volume #6 level 0.0048 |
| 75972 | | |
| 75973 | | > volume #6 level 0.0049 |
| 75974 | | |
| 75975 | | > volume #7 level 0.0055 |
| 75976 | | |
| 75977 | | > volume #7 level 0.006451 |
| 75978 | | |
| 75979 | | > volume #7 level 0.0065 |
| 75980 | | |
| 75981 | | > volume #7 level 0.006 |
| 75982 | | |
| 75983 | | > volume #7 level 0.005 |
| 75984 | | |
| 75985 | | > hide #!7 models |
| 75986 | | |
| 75987 | | > show #!8 models |
| 75988 | | |
| 75989 | | > volume #8 level 0.005 |
| 75990 | | |
| 75991 | | > volume #7 level 0.006 |
| 75992 | | |
| 75993 | | > volume #7 level 0.0065 |
| 75994 | | |
| 75995 | | > volume #8 level 0.0065 |
| 75996 | | |
| 75997 | | > volume #9 level 0.00478 |
| 75998 | | |
| 75999 | | > volume #10 level 0.004767 |
| 76000 | | |
| 76001 | | > hide #!10 models |
| 76002 | | |
| 76003 | | > volume #11 level 0.004442 |
| 76004 | | |
| 76005 | | > volume #11 level 0.004684 |
| 76006 | | |
| 76007 | | > volume #12 level 0.2992 |
| 76008 | | |
| 76009 | | > volume #12 level 0.3232 |
| 76010 | | |
| 76011 | | > volume #13 level 0.00472 |
| 76012 | | |
| 76013 | | [Repeated 1 time(s)] |
| 76014 | | |
| 76015 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 76016 | | QTBUG which explains how to reproduce. |
| 76017 | | |
| 76018 | | > show #!61 models |
| 76019 | | |
| 76020 | | > hide #!13 models |
| 76021 | | |
| 76022 | | > select #61/A |
| 76023 | | |
| 76024 | | 229 atoms, 228 bonds, 31 residues, 1 model selected |
| 76025 | | |
| 76026 | | > select #61/B |
| 76027 | | |
| 76028 | | 1350 atoms, 1373 bonds, 167 residues, 1 model selected |
| 76029 | | |
| 76030 | | > select #61/C |
| 76031 | | |
| 76032 | | 1350 atoms, 1373 bonds, 167 residues, 1 model selected |
| 76033 | | |
| 76034 | | > select #61/D |
| 76035 | | |
| 76036 | | 4763 atoms, 4880 bonds, 591 residues, 1 model selected |
| 76037 | | |
| 76038 | | > select #61/E |
| 76039 | | |
| 76040 | | 1856 atoms, 1891 bonds, 233 residues, 1 model selected |
| 76041 | | |
| 76042 | | > select #61/G |
| 76043 | | |
| 76044 | | 2009 atoms, 2048 bonds, 252 residues, 1 model selected |
| 76045 | | |
| 76046 | | > select #61/G |
| 76047 | | |
| 76048 | | 2009 atoms, 2048 bonds, 252 residues, 1 model selected |
| 76049 | | |
| 76050 | | > select #61/F |
| 76051 | | |
| 76052 | | 4686 atoms, 4798 bonds, 586 residues, 1 model selected |
| 76053 | | |
| 76054 | | > select #61/G |
| 76055 | | |
| 76056 | | 2009 atoms, 2048 bonds, 252 residues, 1 model selected |
| 76057 | | |
| 76058 | | > select #61/F |
| 76059 | | |
| 76060 | | 4686 atoms, 4798 bonds, 586 residues, 1 model selected |
| 76061 | | |
| 76062 | | > select #61/H |
| 76063 | | |
| 76064 | | 1872 atoms, 1904 bonds, 243 residues, 1 model selected |
| 76065 | | |
| 76066 | | > show #!43 models |
| 76067 | | |
| 76068 | | > hide #!43 models |
| 76069 | | |
| 76070 | | > show #!43 models |
| 76071 | | |
| 76072 | | > hide #!43 models |
| 76073 | | |
| 76074 | | > select #61/I |
| 76075 | | |
| 76076 | | 2488 atoms, 2518 bonds, 1 pseudobond, 313 residues, 2 models selected |
| 76077 | | |
| 76078 | | > show #!44 models |
| 76079 | | |
| 76080 | | > hide #!44 models |
| 76081 | | |
| 76082 | | > show #!44 models |
| 76083 | | |
| 76084 | | > hide #!44 models |
| 76085 | | |
| 76086 | | > select #61/J |
| 76087 | | |
| 76088 | | 2879 atoms, 2928 bonds, 1 pseudobond, 362 residues, 2 models selected |
| 76089 | | |
| 76090 | | > select #61/K |
| 76091 | | |
| 76092 | | 1626 atoms, 1645 bonds, 1 pseudobond, 201 residues, 2 models selected |
| 76093 | | |
| 76094 | | > select #61/L |
| 76095 | | |
| 76096 | | 1163 atoms, 1177 bonds, 149 residues, 1 model selected |
| 76097 | | |
| 76098 | | > select #61/M |
| 76099 | | |
| 76100 | | 2212 atoms, 2250 bonds, 283 residues, 1 model selected |
| 76101 | | |
| 76102 | | > select #61/N |
| 76103 | | |
| 76104 | | 1064 atoms, 1080 bonds, 1 pseudobond, 135 residues, 2 models selected |
| 76105 | | |
| 76106 | | > show #!49 models |
| 76107 | | |
| 76108 | | > hide #!49 models |
| 76109 | | |
| 76110 | | > select #61/N |
| 76111 | | |
| 76112 | | 1064 atoms, 1080 bonds, 1 pseudobond, 135 residues, 2 models selected |
| 76113 | | |
| 76114 | | > select #61/O |
| 76115 | | |
| 76116 | | 1200 atoms, 1218 bonds, 150 residues, 1 model selected |
| 76117 | | |
| 76118 | | > select #61/P |
| 76119 | | |
| 76120 | | 1350 atoms, 1373 bonds, 167 residues, 1 model selected |
| 76121 | | |
| 76122 | | > select #61/Q |
| 76123 | | |
| 76124 | | 1971 atoms, 2002 bonds, 244 residues, 1 model selected |
| 76125 | | |
| 76126 | | > select add #61 |
| 76127 | | |
| 76128 | | 34068 atoms, 34686 bonds, 4 pseudobonds, 4274 residues, 2 models selected |
| 76129 | | |
| 76130 | | > select subtract #61 |
| 76131 | | |
| 76132 | | Nothing selected |
| 76133 | | |
| 76134 | | > show #!1 models |
| 76135 | | |
| 76136 | | > graphics silhouettes true |
| 76137 | | |
| 76138 | | > set silhouetteWidth 1.5 |
| 76139 | | |
| 76140 | | > distance style color black |
| 76141 | | |
| 76142 | | [Repeated 1 time(s)] |
| 76143 | | |
| 76144 | | > distance style decimalPlaces 2 |
| 76145 | | |
| 76146 | | [Repeated 1 time(s)] |
| 76147 | | |
| 76148 | | No presets found in custom preset folder |
| 76149 | | /Users/becca/Desktop/Postdoc/Computational_references/ChimeraX_presets |
| 76150 | | |
| 76151 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 76152 | | > paper/Chimera sessions/20241207_chimera_for_figures.cxs" |
| 76153 | | |
| 76154 | | [Repeated 1 time(s)] |
| 76155 | | |
| 76156 | | ——— End of log from Sat Dec 7 12:37:17 2024 ——— |
| 76157 | | |
| 76158 | | opened ChimeraX session |
| 76159 | | |
| 76160 | | > lighting soft |
| 76161 | | |
| 76162 | | > lighting simple |
| 76163 | | |
| 76164 | | > lighting full |
| 76165 | | |
| 76166 | | > lighting soft |
| 76167 | | |
| 76168 | | > preset "overall look" "publication 1 (silhouettes)" |
| 76169 | | |
| 76170 | | Using preset: Overall Look / Publication 1 (Silhouettes) |
| 76171 | | Preset expands to these ChimeraX commands: |
| 76172 | | |
| 76173 | | |
| 76174 | | |
| 76175 | | set bg white |
| 76176 | | graphics silhouettes t |
| 76177 | | lighting depthCue f |
| 76178 | | |
| 76179 | | |
| 76180 | | |
| 76181 | | > hide #!61 models |
| 76182 | | |
| 76183 | | > show #!61 models |
| 76184 | | |
| 76185 | | > hide #!61 models |
| 76186 | | |
| 76187 | | > show #!61 models |
| 76188 | | |
| 76189 | | > hide #!61 models |
| 76190 | | |
| 76191 | | > show #!61 models |
| 76192 | | |
| 76193 | | > preset "overall look" "publication 2 (depth-cued)" |
| 76194 | | |
| 76195 | | Using preset: Overall Look / Publication 2 (Depth-Cued) |
| 76196 | | Preset expands to these ChimeraX commands: |
| 76197 | | |
| 76198 | | |
| 76199 | | |
| 76200 | | set bg white |
| 76201 | | graphics silhouettes f |
| 76202 | | lighting depthCue t |
| 76203 | | |
| 76204 | | |
| 76205 | | |
| 76206 | | > graphics silhouettes true |
| 76207 | | |
| 76208 | | > set silhouetteWidth 2 |
| 76209 | | |
| 76210 | | > set silhouetteWidth 1.5 |
| 76211 | | |
| 76212 | | > set silhouetteWidth 1 |
| 76213 | | |
| 76214 | | > set silhouetteWidth .5 |
| 76215 | | |
| 76216 | | > set silhouetteWidth 3 |
| 76217 | | |
| 76218 | | > set silhouetteWidth 2 |
| 76219 | | |
| 76220 | | > set silhouetteWidth 2.5 |
| 76221 | | |
| 76222 | | > set silhouetteWidth 3 |
| 76223 | | |
| 76224 | | > set silhouetteWidth 4 |
| 76225 | | |
| 76226 | | > set silhouetteWidth 5 |
| 76227 | | |
| 76228 | | > set silhouetteWidth 1.5 |
| 76229 | | |
| 76230 | | > ui mousemode right "translate selected models" |
| 76231 | | |
| 76232 | | > ui mousemode right select |
| 76233 | | |
| 76234 | | > select #1 |
| 76235 | | |
| 76236 | | 2 models selected |
| 76237 | | |
| 76238 | | > select #1 |
| 76239 | | |
| 76240 | | 2 models selected |
| 76241 | | |
| 76242 | | > select clear |
| 76243 | | |
| 76244 | | > ui mousemode right "translate selected models" |
| 76245 | | |
| 76246 | | > alias fmap ui tool show "Fit in Map" |
| 76247 | | |
| 76248 | | > fmap |
| 76249 | | |
| 76250 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 76251 | | QTBUG which explains how to reproduce. |
| 76252 | | |
| 76253 | | > cartoon smooth 1 |
| 76254 | | |
| 76255 | | > style stick |
| 76256 | | |
| 76257 | | Changed 161516 atom styles |
| 76258 | | |
| 76259 | | > size stickRadius 0.5 |
| 76260 | | |
| 76261 | | Changed 164114 bond radii |
| 76262 | | |
| 76263 | | > show #!61 atoms |
| 76264 | | |
| 76265 | | > hide #!61 atoms |
| 76266 | | |
| 76267 | | > show #!61 atoms |
| 76268 | | |
| 76269 | | > size stickRadius 0.4 |
| 76270 | | |
| 76271 | | Changed 164114 bond radii |
| 76272 | | |
| 76273 | | > size stickRadius 0.3 |
| 76274 | | |
| 76275 | | Changed 164114 bond radii |
| 76276 | | |
| 76277 | | > size stickRadius 0.7 |
| 76278 | | |
| 76279 | | Changed 164114 bond radii |
| 76280 | | |
| 76281 | | > size stickRadius 0.1 |
| 76282 | | |
| 76283 | | Changed 164114 bond radii |
| 76284 | | |
| 76285 | | > size stickRadius 0.25 |
| 76286 | | |
| 76287 | | Changed 164114 bond radii |
| 76288 | | |
| 76289 | | > size stickRadius 0.3 |
| 76290 | | |
| 76291 | | Changed 164114 bond radii |
| 76292 | | |
| 76293 | | > size stickRadius 0.4 |
| 76294 | | |
| 76295 | | Changed 164114 bond radii |
| 76296 | | |
| 76297 | | > hide #!61 atoms |
| 76298 | | |
| 76299 | | > cartoon all |
| 76300 | | |
| 76301 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 76302 | | QTBUG which explains how to reproduce. |
| 76303 | | |
| 76304 | | > help help:quickstart |
| 76305 | | |
| 76306 | | > cartoon style |
| 76307 | | |
| 76308 | | fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif #40 |
| 76309 | | \- helix mode=default xsection=round width=2 height=0.4 arrow=False arrow |
| 76310 | | scale=2 |
| 76311 | | \- strand mode=default xsection=square width=2 height=0.4 arrow=True arrow |
| 76312 | | scale=2 |
| 76313 | | \- coil xsection=round width=0.4 height=0.4 |
| 76314 | | \- nucleic xsection=square width=0.4 height=2 |
| 76315 | | \- divisions=20 |
| 76316 | | \- oval parameters: sides=12 |
| 76317 | | \- barbell parameters: sides=18 scale=0.5 |
| 76318 | | \- worm=False |
| 76319 | | fold_20240711_copi_golph3_model_0.cif A #34.1 |
| 76320 | | \- helix mode=default xsection=round width=2 height=0.4 arrow=False arrow |
| 76321 | | scale=2 |
| 76322 | | \- strand mode=default xsection=square width=2 height=0.4 arrow=True arrow |
| 76323 | | scale=2 |
| 76324 | | \- coil xsection=round width=0.4 height=0.4 |
| 76325 | | \- nucleic xsection=square width=0.4 height=2 |
| 76326 | | \- divisions=20 |
| 76327 | | \- oval parameters: sides=12 |
| 76328 | | \- barbell parameters: sides=18 scale=0.5 |
| 76329 | | \- worm=False |
| 76330 | | fold_20240711_copi_golph3_model_0.cif B #34.2 |
| 76331 | | \- helix mode=default xsection=round width=2 height=0.4 arrow=False arrow |
| 76332 | | scale=2 |
| 76333 | | \- strand mode=default xsection=square width=2 height=0.4 arrow=True arrow |
| 76334 | | scale=2 |
| 76335 | | \- coil xsection=round width=0.4 height=0.4 |
| 76336 | | \- nucleic xsection=square width=0.4 height=2 |
| 76337 | | \- divisions=20 |
| 76338 | | \- oval parameters: sides=12 |
| 76339 | | \- barbell parameters: sides=18 scale=0.5 |
| 76340 | | \- worm=False |
| 76341 | | fold_20240711_copi_golph3_model_0.cif C #34.3 |
| 76342 | | \- helix mode=default xsection=round width=2 height=0.4 arrow=False arrow |
| 76343 | | scale=2 |
| 76344 | | \- strand mode=default xsection=square width=2 height=0.4 arrow=True arrow |
| 76345 | | scale=2 |
| 76346 | | \- coil xsection=round width=0.4 height=0.4 |
| 76347 | | \- nucleic xsection=square width=0.4 height=2 |
| 76348 | | \- divisions=20 |
| 76349 | | \- oval parameters: sides=12 |
| 76350 | | \- barbell parameters: sides=18 scale=0.5 |
| 76351 | | \- worm=False |
| 76352 | | fold_20240711_copi_golph3_model_0.cif D #34.4 |
| 76353 | | \- helix mode=default xsection=round width=2 height=0.4 arrow=False arrow |
| 76354 | | scale=2 |
| 76355 | | \- strand mode=default xsection=square width=2 height=0.4 arrow=True arrow |
| 76356 | | scale=2 |
| 76357 | | \- coil xsection=round width=0.4 height=0.4 |
| 76358 | | \- nucleic xsection=square width=0.4 height=2 |
| 76359 | | \- divisions=20 |
| 76360 | | \- oval parameters: sides=12 |
| 76361 | | \- barbell parameters: sides=18 scale=0.5 |
| 76362 | | \- worm=False |
| 76363 | | fold_20240711_copi_golph3_model_0.cif E #34.5 |
| 76364 | | \- helix mode=default xsection=round width=2 height=0.4 arrow=False arrow |
| 76365 | | scale=2 |
| 76366 | | \- strand mode=default xsection=square width=2 height=0.4 arrow=True arrow |
| 76367 | | scale=2 |
| 76368 | | \- coil xsection=round width=0.4 height=0.4 |
| 76369 | | \- nucleic xsection=square width=0.4 height=2 |
| 76370 | | \- divisions=20 |
| 76371 | | \- oval parameters: sides=12 |
| 76372 | | \- barbell parameters: sides=18 scale=0.5 |
| 76373 | | \- worm=False |
| 76374 | | fold_20240711_copi_golph3_model_0.cif F #34.6 |
| 76375 | | \- helix mode=default xsection=round width=2 height=0.4 arrow=False arrow |
| 76376 | | scale=2 |
| 76377 | | \- strand mode=default xsection=square width=2 height=0.4 arrow=True arrow |
| 76378 | | scale=2 |
| 76379 | | \- coil xsection=round width=0.4 height=0.4 |
| 76380 | | \- nucleic xsection=square width=0.4 height=2 |
| 76381 | | \- divisions=20 |
| 76382 | | \- oval parameters: sides=12 |
| 76383 | | \- barbell parameters: sides=18 scale=0.5 |
| 76384 | | \- worm=False |
| 76385 | | fold_20240711_copi_golph3_model_0.cif G #34.7 |
| 76386 | | \- helix mode=default xsection=round width=2 height=0.4 arrow=False arrow |
| 76387 | | scale=2 |
| 76388 | | \- strand mode=default xsection=square width=2 height=0.4 arrow=True arrow |
| 76389 | | scale=2 |
| 76390 | | \- coil xsection=round width=0.4 height=0.4 |
| 76391 | | \- nucleic xsection=square width=0.4 height=2 |
| 76392 | | \- divisions=20 |
| 76393 | | \- oval parameters: sides=12 |
| 76394 | | \- barbell parameters: sides=18 scale=0.5 |
| 76395 | | \- worm=False |
| 76396 | | fold_20240711_copi_golph3_model_0.cif H #34.8 |
| 76397 | | \- helix mode=default xsection=round width=2 height=0.4 arrow=False arrow |
| 76398 | | scale=2 |
| 76399 | | \- strand mode=default xsection=square width=2 height=0.4 arrow=True arrow |
| 76400 | | scale=2 |
| 76401 | | \- coil xsection=round width=0.4 height=0.4 |
| 76402 | | \- nucleic xsection=square width=0.4 height=2 |
| 76403 | | \- divisions=20 |
| 76404 | | \- oval parameters: sides=12 |
| 76405 | | \- barbell parameters: sides=18 scale=0.5 |
| 76406 | | \- worm=False |
| 76407 | | fold_20240711_copi_golph3_model_0.cif I #34.9 |
| 76408 | | \- helix mode=default xsection=round width=2 height=0.4 arrow=False arrow |
| 76409 | | scale=2 |
| 76410 | | \- strand mode=default xsection=square width=2 height=0.4 arrow=True arrow |
| 76411 | | scale=2 |
| 76412 | | \- coil xsection=round width=0.4 height=0.4 |
| 76413 | | \- nucleic xsection=square width=0.4 height=2 |
| 76414 | | \- divisions=20 |
| 76415 | | \- oval parameters: sides=12 |
| 76416 | | \- barbell parameters: sides=18 scale=0.5 |
| 76417 | | \- worm=False |
| 76418 | | 20240711_copi_golph3_alpha_M1-T591.cif #38 |
| 76419 | | \- helix mode=default xsection=round width=2 height=0.4 arrow=False arrow |
| 76420 | | scale=2 |
| 76421 | | \- strand mode=default xsection=square width=2 height=0.4 arrow=True arrow |
| 76422 | | scale=2 |
| 76423 | | \- coil xsection=round width=0.4 height=0.4 |
| 76424 | | \- nucleic xsection=square width=0.4 height=2 |
| 76425 | | \- divisions=20 |
| 76426 | | \- oval parameters: sides=12 |
| 76427 | | \- barbell parameters: sides=18 scale=0.5 |
| 76428 | | \- worm=False |
| 76429 | | 20240711_copi_golph3_alpha_I592-G900.cif #39 |
| 76430 | | \- helix mode=default xsection=round width=2 height=0.4 arrow=False arrow |
| 76431 | | scale=2 |
| 76432 | | \- strand mode=default xsection=square width=2 height=0.4 arrow=True arrow |
| 76433 | | scale=2 |
| 76434 | | \- coil xsection=round width=0.4 height=0.4 |
| 76435 | | \- nucleic xsection=square width=0.4 height=2 |
| 76436 | | \- divisions=20 |
| 76437 | | \- oval parameters: sides=12 |
| 76438 | | \- barbell parameters: sides=18 scale=0.5 |
| 76439 | | \- worm=False |
| 76440 | | 20240711_copi_golph3_betaprime_M1-S586.cif #41 |
| 76441 | | \- helix mode=default xsection=round width=2 height=0.4 arrow=False arrow |
| 76442 | | scale=2 |
| 76443 | | \- strand mode=default xsection=square width=2 height=0.4 arrow=True arrow |
| 76444 | | scale=2 |
| 76445 | | \- coil xsection=round width=0.4 height=0.4 |
| 76446 | | \- nucleic xsection=square width=0.4 height=2 |
| 76447 | | \- divisions=20 |
| 76448 | | \- oval parameters: sides=12 |
| 76449 | | \- barbell parameters: sides=18 scale=0.5 |
| 76450 | | \- worm=False |
| 76451 | | 20240711_copi_golph3_betaprime_L587-D905.cif #42 |
| 76452 | | \- helix mode=default xsection=round width=2 height=0.4 arrow=False arrow |
| 76453 | | scale=2 |
| 76454 | | \- strand mode=default xsection=square width=2 height=0.4 arrow=True arrow |
| 76455 | | scale=2 |
| 76456 | | \- coil xsection=round width=0.4 height=0.4 |
| 76457 | | \- nucleic xsection=square width=0.4 height=2 |
| 76458 | | \- divisions=20 |
| 76459 | | \- oval parameters: sides=12 |
| 76460 | | \- barbell parameters: sides=18 scale=0.5 |
| 76461 | | \- worm=False |
| 76462 | | 20240711_copi_golph3_beta_S711-L953.cif #43 |
| 76463 | | \- helix mode=default xsection=round width=2 height=0.4 arrow=False arrow |
| 76464 | | scale=2 |
| 76465 | | \- strand mode=default xsection=square width=2 height=0.4 arrow=True arrow |
| 76466 | | scale=2 |
| 76467 | | \- coil xsection=round width=0.4 height=0.4 |
| 76468 | | \- nucleic xsection=square width=0.4 height=2 |
| 76469 | | \- divisions=20 |
| 76470 | | \- oval parameters: sides=12 |
| 76471 | | \- barbell parameters: sides=18 scale=0.5 |
| 76472 | | \- worm=False |
| 76473 | | 20240711_copi_golph3_beta_H311-E659.cif #44 |
| 76474 | | \- helix mode=default xsection=round width=2 height=0.4 arrow=False arrow |
| 76475 | | scale=2 |
| 76476 | | \- strand mode=default xsection=square width=2 height=0.4 arrow=True arrow |
| 76477 | | scale=2 |
| 76478 | | \- coil xsection=round width=0.4 height=0.4 |
| 76479 | | \- nucleic xsection=square width=0.4 height=2 |
| 76480 | | \- divisions=20 |
| 76481 | | \- oval parameters: sides=12 |
| 76482 | | \- barbell parameters: sides=18 scale=0.5 |
| 76483 | | \- worm=False |
| 76484 | | 20240711_copi_golph3_beta_M1-H311_K660-A710.cif #45 |
| 76485 | | \- helix mode=default xsection=round width=2 height=0.4 arrow=False arrow |
| 76486 | | scale=2 |
| 76487 | | \- strand mode=default xsection=square width=2 height=0.4 arrow=True arrow |
| 76488 | | scale=2 |
| 76489 | | \- coil xsection=round width=0.4 height=0.4 |
| 76490 | | \- nucleic xsection=square width=0.4 height=2 |
| 76491 | | \- divisions=20 |
| 76492 | | \- oval parameters: sides=12 |
| 76493 | | \- barbell parameters: sides=18 scale=0.5 |
| 76494 | | \- worm=False |
| 76495 | | 20240711_copi_golph3_delta_M1-S273.cif #46 |
| 76496 | | \- helix mode=default xsection=round width=2 height=0.4 arrow=False arrow |
| 76497 | | scale=2 |
| 76498 | | \- strand mode=default xsection=square width=2 height=0.4 arrow=True arrow |
| 76499 | | scale=2 |
| 76500 | | \- coil xsection=round width=0.4 height=0.4 |
| 76501 | | \- nucleic xsection=square width=0.4 height=2 |
| 76502 | | \- divisions=20 |
| 76503 | | \- oval parameters: sides=12 |
| 76504 | | \- barbell parameters: sides=18 scale=0.5 |
| 76505 | | \- worm=False |
| 76506 | | 20240711_copi_golph3_gammm1_T449-R609.cif #49 |
| 76507 | | \- helix mode=default xsection=round width=2 height=0.4 arrow=False arrow |
| 76508 | | scale=2 |
| 76509 | | \- strand mode=default xsection=square width=2 height=0.4 arrow=True arrow |
| 76510 | | scale=2 |
| 76511 | | \- coil xsection=round width=0.4 height=0.4 |
| 76512 | | \- nucleic xsection=square width=0.4 height=2 |
| 76513 | | \- divisions=20 |
| 76514 | | \- oval parameters: sides=12 |
| 76515 | | \- barbell parameters: sides=18 scale=0.5 |
| 76516 | | \- worm=False |
| 76517 | | 20240711_copi_golph3_gamma1_M1-P299.cif #48 |
| 76518 | | \- helix mode=default xsection=round width=2 height=0.4 arrow=False arrow |
| 76519 | | scale=2 |
| 76520 | | \- strand mode=default xsection=square width=2 height=0.4 arrow=True arrow |
| 76521 | | scale=2 |
| 76522 | | \- coil xsection=round width=0.4 height=0.4 |
| 76523 | | \- nucleic xsection=square width=0.4 height=2 |
| 76524 | | \- divisions=20 |
| 76525 | | \- oval parameters: sides=12 |
| 76526 | | \- barbell parameters: sides=18 scale=0.5 |
| 76527 | | \- worm=False |
| 76528 | | 20240711_copi_golph3_gamma1_K300-F448.cif #47 |
| 76529 | | \- helix mode=default xsection=round width=2 height=0.4 arrow=False arrow |
| 76530 | | scale=2 |
| 76531 | | \- strand mode=default xsection=square width=2 height=0.4 arrow=True arrow |
| 76532 | | scale=2 |
| 76533 | | \- coil xsection=round width=0.4 height=0.4 |
| 76534 | | \- nucleic xsection=square width=0.4 height=2 |
| 76535 | | \- divisions=20 |
| 76536 | | \- oval parameters: sides=12 |
| 76537 | | \- barbell parameters: sides=18 scale=0.5 |
| 76538 | | \- worm=False |
| 76539 | | 20240711_copi_golph3_zeta1.cif #50 |
| 76540 | | \- helix mode=default xsection=round width=2 height=0.4 arrow=False arrow |
| 76541 | | scale=2 |
| 76542 | | \- strand mode=default xsection=square width=2 height=0.4 arrow=True arrow |
| 76543 | | scale=2 |
| 76544 | | \- coil xsection=round width=0.4 height=0.4 |
| 76545 | | \- nucleic xsection=square width=0.4 height=2 |
| 76546 | | \- divisions=20 |
| 76547 | | \- oval parameters: sides=12 |
| 76548 | | \- barbell parameters: sides=18 scale=0.5 |
| 76549 | | \- worm=False |
| 76550 | | 20240711_copi_golph3_beta_Arf1_.cif #51 |
| 76551 | | \- helix mode=default xsection=round width=2 height=0.4 arrow=False arrow |
| 76552 | | scale=2 |
| 76553 | | \- strand mode=default xsection=square width=2 height=0.4 arrow=True arrow |
| 76554 | | scale=2 |
| 76555 | | \- coil xsection=round width=0.4 height=0.4 |
| 76556 | | \- nucleic xsection=square width=0.4 height=2 |
| 76557 | | \- divisions=20 |
| 76558 | | \- oval parameters: sides=12 |
| 76559 | | \- barbell parameters: sides=18 scale=0.5 |
| 76560 | | \- worm=False |
| 76561 | | 20240711_copi_golph3_gamma_Arf1_.cif #52 |
| 76562 | | \- helix mode=default xsection=round width=2 height=0.4 arrow=False arrow |
| 76563 | | scale=2 |
| 76564 | | \- strand mode=default xsection=square width=2 height=0.4 arrow=True arrow |
| 76565 | | scale=2 |
| 76566 | | \- coil xsection=round width=0.4 height=0.4 |
| 76567 | | \- nucleic xsection=square width=0.4 height=2 |
| 76568 | | \- divisions=20 |
| 76569 | | \- oval parameters: sides=12 |
| 76570 | | \- barbell parameters: sides=18 scale=0.5 |
| 76571 | | \- worm=False |
| 76572 | | 20240711_copi_golph3_third_Arf1.cif #53 |
| 76573 | | \- helix mode=default xsection=round width=2 height=0.4 arrow=False arrow |
| 76574 | | scale=2 |
| 76575 | | \- strand mode=default xsection=square width=2 height=0.4 arrow=True arrow |
| 76576 | | scale=2 |
| 76577 | | \- coil xsection=round width=0.4 height=0.4 |
| 76578 | | \- nucleic xsection=square width=0.4 height=2 |
| 76579 | | \- divisions=20 |
| 76580 | | \- oval parameters: sides=12 |
| 76581 | | \- barbell parameters: sides=18 scale=0.5 |
| 76582 | | \- worm=False |
| 76583 | | 20240711_copi_golph3_golph3_M1-.cif #54 |
| 76584 | | \- helix mode=default xsection=round width=2 height=0.4 arrow=False arrow |
| 76585 | | scale=2 |
| 76586 | | \- strand mode=default xsection=square width=2 height=0.4 arrow=True arrow |
| 76587 | | scale=2 |
| 76588 | | \- coil xsection=round width=0.4 height=0.4 |
| 76589 | | \- nucleic xsection=square width=0.4 height=2 |
| 76590 | | \- divisions=20 |
| 76591 | | \- oval parameters: sides=12 |
| 76592 | | \- barbell parameters: sides=18 scale=0.5 |
| 76593 | | \- worm=False |
| 76594 | | 20240711_copi_golph3_golph3_.cif #55 |
| 76595 | | \- helix mode=default xsection=round width=2 height=0.4 arrow=False arrow |
| 76596 | | scale=2 |
| 76597 | | \- strand mode=default xsection=square width=2 height=0.4 arrow=True arrow |
| 76598 | | scale=2 |
| 76599 | | \- coil xsection=round width=0.4 height=0.4 |
| 76600 | | \- nucleic xsection=square width=0.4 height=2 |
| 76601 | | \- divisions=20 |
| 76602 | | \- oval parameters: sides=12 |
| 76603 | | \- barbell parameters: sides=18 scale=0.5 |
| 76604 | | \- worm=False |
| 76605 | | 5nzr_COPI_coat_leaf_2017.cif #57 |
| 76606 | | \- helix mode=default xsection=round width=2 height=0.4 arrow=False arrow |
| 76607 | | scale=2 |
| 76608 | | \- strand mode=default xsection=square width=2 height=0.4 arrow=True arrow |
| 76609 | | scale=2 |
| 76610 | | \- coil xsection=round width=0.4 height=0.4 |
| 76611 | | \- nucleic xsection=square width=0.4 height=2 |
| 76612 | | \- divisions=20 |
| 76613 | | \- oval parameters: sides=12 |
| 76614 | | \- barbell parameters: sides=18 scale=0.5 |
| 76615 | | \- worm=False |
| 76616 | | combine_model_COPI_GOLPH3_colorset2 #61 |
| 76617 | | \- helix mode=default xsection=round width=2 height=0.4 arrow=False arrow |
| 76618 | | scale=2 |
| 76619 | | \- strand mode=default xsection=square width=2 height=0.4 arrow=True arrow |
| 76620 | | scale=2 |
| 76621 | | \- coil xsection=round width=0.4 height=0.4 |
| 76622 | | \- nucleic xsection=square width=0.4 height=2 |
| 76623 | | \- divisions=20 |
| 76624 | | \- oval parameters: sides=12 |
| 76625 | | \- barbell parameters: sides=18 scale=0.5 |
| 76626 | | \- worm=False |
| 76627 | | |
| 76628 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 76629 | | > paper/Chimera sessions/20241208_chimera_for_figures.cxs" |
| 76630 | | |
| 76631 | | > cartoon style #61 width 1.5 thickness 0.3 |
| 76632 | | |
| 76633 | | > cartoon style #61 width 12 thickness 0.3 |
| 76634 | | |
| 76635 | | > cartoon style #61 width 3 thickness 0.3 |
| 76636 | | |
| 76637 | | > cartoon style #61 width 2 thickness 0.3 |
| 76638 | | |
| 76639 | | > cartoon style #61 width 1.5 thickness 0.3 |
| 76640 | | |
| 76641 | | > cartoon style #61 width 1 thickness 0.3 |
| 76642 | | |
| 76643 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 76644 | | QTBUG which explains how to reproduce. |
| 76645 | | |
| 76646 | | > cartoon style #61 width 2 thickness 0.3 |
| 76647 | | |
| 76648 | | > cartoon style #61 width 2 thickness 0.4 |
| 76649 | | |
| 76650 | | > cartoon style #61 width 2 thickness 3 |
| 76651 | | |
| 76652 | | > cartoon style #61 width 2 thickness 2 |
| 76653 | | |
| 76654 | | > cartoon style #61 width 2 thickness 1 |
| 76655 | | |
| 76656 | | > cartoon style #61 width 2 thickness .5 |
| 76657 | | |
| 76658 | | > cartoon style #61 width 3 thickness .5 |
| 76659 | | |
| 76660 | | > cartoon style #61 helix width 1.5 thick 0.3 |
| 76661 | | |
| 76662 | | Expected a keyword |
| 76663 | | |
| 76664 | | > cartoon style helix width 1.5 0.3 |
| 76665 | | |
| 76666 | | Expected a keyword |
| 76667 | | |
| 76668 | | > cartoon style #61 strand xsection rect width |
| 76669 | | |
| 76670 | | Expected a keyword |
| 76671 | | |
| 76672 | | > cartoon style strand xsection rectangle width 2 |
| 76673 | | |
| 76674 | | > hide #!61 models |
| 76675 | | |
| 76676 | | > show #!61 models |
| 76677 | | |
| 76678 | | > hide #!1 models |
| 76679 | | |
| 76680 | | > cartoon style #61 width 2 thickness 0.4 xsection oval |
| 76681 | | |
| 76682 | | > cartoon style #61 width 2 thickness 0.4 xsection rectangle |
| 76683 | | |
| 76684 | | > cartoon style #61 width 2 thickness 0.4 xsection barbell |
| 76685 | | |
| 76686 | | > cartoon style #61 width 2 thickness 0.4 xsection oval |
| 76687 | | |
| 76688 | | > cartoon style #61 width 2 thickness 0.4 xsection rectangle |
| 76689 | | |
| 76690 | | > cartoon style #61 width 2 thickness 0.4 xsection barbell |
| 76691 | | |
| 76692 | | > cartoon style #61 width 2 thickness 0.4 xsection rectangle |
| 76693 | | |
| 76694 | | > cartoon style #61 width 2 thickness 0.4 xsection oval |
| 76695 | | |
| 76696 | | > cartoon style #61 width 2 thickness 0.4 xsection barbell |
| 76697 | | |
| 76698 | | > show #!61 atoms |
| 76699 | | |
| 76700 | | > cartoon style #61 width 2 thickness 0.4 xsection oval |
| 76701 | | |
| 76702 | | > cartoon style #61 width 2 thickness 0.4 xsection rectangle |
| 76703 | | |
| 76704 | | > cartoon style #61 width 2 thickness 0.4 xsection oval |
| 76705 | | |
| 76706 | | > cartoon style #61 width 2.5 thickness 0.4 xsection oval |
| 76707 | | |
| 76708 | | > cartoon style #61 width 2.5 thickness 0.5 xsection oval |
| 76709 | | |
| 76710 | | > hide #!61 atoms |
| 76711 | | |
| 76712 | | > cartoon style #61 width 2 thickness 0.5 xsection oval |
| 76713 | | |
| 76714 | | > cartoon style #61 width 2 thickness 0.4 xsection oval |
| 76715 | | |
| 76716 | | > cartoon style #61 width 2 thickness 0.3 xsection oval |
| 76717 | | |
| 76718 | | > cartoon style #61 width 2.2 thickness 0.3 xsection oval |
| 76719 | | |
| 76720 | | > cartoon style #61 width 2 thickness 0.3 xsection oval |
| 76721 | | |
| 76722 | | > cartoon style #61 width 2 thickness 0.7 xsection oval |
| 76723 | | |
| 76724 | | > show #!61 atoms |
| 76725 | | |
| 76726 | | [Repeated 1 time(s)] |
| 76727 | | |
| 76728 | | > hide #!61 atoms |
| 76729 | | |
| 76730 | | > show #!61 atoms |
| 76731 | | |
| 76732 | | > cartoon style #61 width 2 thickness 0.5 xsection oval |
| 76733 | | |
| 76734 | | > cartoon style #61 width 2 thickness 0.6 xsection oval |
| 76735 | | |
| 76736 | | > hide #!61 atoms |
| 76737 | | |
| 76738 | | > ui tool show "Side View" |
| 76739 | | |
| 76740 | | > lighting simple |
| 76741 | | |
| 76742 | | > lighting soft |
| 76743 | | |
| 76744 | | > lighting simple |
| 76745 | | |
| 76746 | | > cartoon style #61 width 2 thickness 0.6 xsection oval modeHelix |
| 76747 | | |
| 76748 | | Missing "modeHelix" keyword's argument |
| 76749 | | |
| 76750 | | > cartoon style #61 width 2 thickness 0.6 xsection oval modeHelix tube |
| 76751 | | |
| 76752 | | > cartoon style #61 width 2 thickness 0.6 xsection oval modeHelix wrap |
| 76753 | | |
| 76754 | | > cartoon style #61 width 2 thickness 0.4 xsection oval modeHelix tube |
| 76755 | | |
| 76756 | | > cartoon style #61 width 2 thickness 0.4 xsection oval modeHelix wrap |
| 76757 | | |
| 76758 | | > cartoon style #61 width 2 thickness 0.6 xsection oval modeHelix wrap |
| 76759 | | |
| 76760 | | > cartoon style #61 width 2 thickness 0.6 xsection oval modeHelix wrap radius |
| 76761 | | > 2 |
| 76762 | | |
| 76763 | | > cartoon style #61 width 2 thickness 0.6 xsection oval modeHelix wrap radius |
| 76764 | | > auto |
| 76765 | | |
| 76766 | | > cartoon style #61 width 2 thickness 0.6 xsection oval modeHelix wrap sides16 |
| 76767 | | |
| 76768 | | Expected a keyword |
| 76769 | | |
| 76770 | | > cartoon style #61 width 2 thickness 0.6 xsection oval modeHelix wrap sides |
| 76771 | | > 16 |
| 76772 | | |
| 76773 | | > cartoon style #61 width 2 thickness 0.6 xsection oval modeHelix wrap sides |
| 76774 | | > 12 |
| 76775 | | |
| 76776 | | > cartoon style #61 width 2 thickness 0.6 xsection oval modeHelix wrap sides 4 |
| 76777 | | |
| 76778 | | > cartoon style #61 width 2 thickness 0.6 xsection oval modeHelix wrap sides |
| 76779 | | > 20 |
| 76780 | | |
| 76781 | | > cartoon style #61 width 2 thickness 0.6 xsection oval modeHelix wrap sides |
| 76782 | | > 12 |
| 76783 | | |
| 76784 | | > cartoon style #61 width 2 thickness 0.6 xsection oval modeHelix wrap sides |
| 76785 | | > 20 |
| 76786 | | |
| 76787 | | > cartoon style #61 width 2 thickness 0.6 xsection oval modeHelix wrap sides |
| 76788 | | > 30 |
| 76789 | | |
| 76790 | | Invalid "sides" argument: Must be less than or equal to 24 |
| 76791 | | |
| 76792 | | > cartoon style #61 width 2 thickness 0.6 xsection oval modeHelix wrap sides |
| 76793 | | > 24 |
| 76794 | | |
| 76795 | | > cartoon style #61 width 2 thickness 0.6 xsection oval modeHelix wrap sides 4 |
| 76796 | | |
| 76797 | | > cartoon style #61 width 2 thickness 0.6 xsection oval modeHelix wrap sides 8 |
| 76798 | | |
| 76799 | | > cartoon style #61 width 2 thickness 0.6 xsection oval modeHelix wrap sides |
| 76800 | | > 12 |
| 76801 | | |
| 76802 | | > cartoon style #61 width 2 thickness 0.6 xsection oval modeHelix wrap sides |
| 76803 | | > 16 |
| 76804 | | |
| 76805 | | > cartoon style #61 width 2 thickness 0.6 xsection oval modeHelix wrap sides |
| 76806 | | > 20 |
| 76807 | | |
| 76808 | | > cartoon style #61 width 2 thickness 0.6 xsection oval modeHelix wrap sides |
| 76809 | | > 24 |
| 76810 | | |
| 76811 | | > cartoon style #61 width 2 thickness 0.6 xsection oval modeHelix wrap sides |
| 76812 | | > 16 |
| 76813 | | |
| 76814 | | > cartoon style #61 width 2 thickness 0.6 xsection oval modeHelix wrap sides |
| 76815 | | > 16 arrowScale 3 |
| 76816 | | |
| 76817 | | > cartoon style #61 width 2 thickness 0.6 xsection oval modeHelix wrap sides |
| 76818 | | > 16 arrowScale 2.5 |
| 76819 | | |
| 76820 | | > cartoon style #61 width 2 thickness 0.6 xsection oval modeHelix wrap sides |
| 76821 | | > 16 arrowScale 2 |
| 76822 | | |
| 76823 | | > cartoon style #61 width 2 thickness 0.6 xsection oval modeHelix wrap sides |
| 76824 | | > 16 arrowScale 1 |
| 76825 | | |
| 76826 | | > cartoon style #61 width 2 thickness 0.6 xsection oval modeHelix wrap sides |
| 76827 | | > 16 arrowScale 1.5 |
| 76828 | | |
| 76829 | | > cartoon style #61 width 2 thickness 0.6 xsection oval modeHelix wrap sides |
| 76830 | | > 16 arrowScale 2 |
| 76831 | | |
| 76832 | | > cartoon style #61 width 2 thickness 0.6 xsection oval modeHelix wrap sides |
| 76833 | | > 16 arrowScale 2.25 |
| 76834 | | |
| 76835 | | > cartoon style #61 width 2.5 thickness 0.6 xsection oval modeHelix wrap sides |
| 76836 | | > 16 arrowScale 2.25 |
| 76837 | | |
| 76838 | | > show #!1 models |
| 76839 | | |
| 76840 | | > lighting soft |
| 76841 | | |
| 76842 | | > set bgColor white |
| 76843 | | |
| 76844 | | > graphics silhouettes true |
| 76845 | | |
| 76846 | | > set silhouetteWidth 1.5 |
| 76847 | | |
| 76848 | | > color #1 #ffffff80 models |
| 76849 | | |
| 76850 | | > color #1 #ffffff83 models |
| 76851 | | |
| 76852 | | > hide #!61 models |
| 76853 | | |
| 76854 | | > show #!61 models |
| 76855 | | |
| 76856 | | > hide #!61 models |
| 76857 | | |
| 76858 | | > show #!61 models |
| 76859 | | |
| 76860 | | > hide #!61 models |
| 76861 | | |
| 76862 | | > show #!61 models |
| 76863 | | |
| 76864 | | > hide #!61 models |
| 76865 | | |
| 76866 | | > show #!61 models |
| 76867 | | |
| 76868 | | > lighting simple |
| 76869 | | |
| 76870 | | > lighting soft |
| 76871 | | |
| 76872 | | > lighting full |
| 76873 | | |
| 76874 | | > lighting flat |
| 76875 | | |
| 76876 | | > lighting shadows true intensity 0.5 |
| 76877 | | |
| 76878 | | > lighting flat |
| 76879 | | |
| 76880 | | > lighting shadows true intensity 0.5 |
| 76881 | | |
| 76882 | | > lighting soft |
| 76883 | | |
| 76884 | | > set bgColor #ffffff00 |
| 76885 | | |
| 76886 | | > graphics silhouettes true width 5 |
| 76887 | | |
| 76888 | | > graphics silhouettes true width 2 |
| 76889 | | |
| 76890 | | > graphics silhouettes true width 1.5 |
| 76891 | | |
| 76892 | | > camera ortho |
| 76893 | | |
| 76894 | | > cartoon stype protein modeHelix default arrows false xsection oval width 2 |
| 76895 | | > thickness 2 |
| 76896 | | |
| 76897 | | Expected an atoms specifier or a keyword |
| 76898 | | |
| 76899 | | > cartoon style protein modeHelix default arrows false xsection oval width 2 |
| 76900 | | > thickness 2 |
| 76901 | | |
| 76902 | | > cartoon style #61 width 2.5 thickness 0.6 xsection oval modeHelix wrap sides |
| 76903 | | > 16 arrowScale 2.25 |
| 76904 | | |
| 76905 | | > cartoon suppressBackboneDisplay false |
| 76906 | | |
| 76907 | | > cartoon suppressBackboneDisplay true |
| 76908 | | |
| 76909 | | > cartoon suppressBackboneDisplay false |
| 76910 | | |
| 76911 | | > cartoon suppressBackboneDisplay true |
| 76912 | | |
| 76913 | | > cartoon style protein modeHelix default arrows false xsection oval width 1 |
| 76914 | | > thickness 1 |
| 76915 | | |
| 76916 | | > cartoon style #61 width 2.5 thickness 0.6 xsection oval modeHelix wrap sides |
| 76917 | | > 16 arrowScale 2.25 |
| 76918 | | |
| 76919 | | > show #!9 models |
| 76920 | | |
| 76921 | | > color #9 white models |
| 76922 | | |
| 76923 | | > color #9 #ffffff6d models |
| 76924 | | |
| 76925 | | > color #9 #ffffff68 models |
| 76926 | | |
| 76927 | | > color #9 #ffffff80 models |
| 76928 | | |
| 76929 | | > hide #!61 models |
| 76930 | | |
| 76931 | | > show #!61 models |
| 76932 | | |
| 76933 | | > hide #!61 models |
| 76934 | | |
| 76935 | | > show #!61 models |
| 76936 | | |
| 76937 | | > hide #!61 models |
| 76938 | | |
| 76939 | | > show #!61 models |
| 76940 | | |
| 76941 | | > hide #!61 models |
| 76942 | | |
| 76943 | | > show #!61 models |
| 76944 | | |
| 76945 | | > lighting flat |
| 76946 | | |
| 76947 | | > hide #!61 models |
| 76948 | | |
| 76949 | | > show #!61 models |
| 76950 | | |
| 76951 | | > hide #!61 models |
| 76952 | | |
| 76953 | | > show #!61 models |
| 76954 | | |
| 76955 | | > color #9 #ffffff00 models |
| 76956 | | |
| 76957 | | > color #9 #ffffff80 models |
| 76958 | | |
| 76959 | | > hide #!9 models |
| 76960 | | |
| 76961 | | > show #!11 models |
| 76962 | | |
| 76963 | | > color #11 white models |
| 76964 | | |
| 76965 | | > color #11 #ffffff80 models |
| 76966 | | |
| 76967 | | > view view1 |
| 76968 | | |
| 76969 | | > view view2 |
| 76970 | | |
| 76971 | | > view view3 |
| 76972 | | |
| 76973 | | > view view4 |
| 76974 | | |
| 76975 | | > view view5 |
| 76976 | | |
| 76977 | | > view view6 |
| 76978 | | |
| 76979 | | > view view7 |
| 76980 | | |
| 76981 | | > view view1 |
| 76982 | | |
| 76983 | | > camera default |
| 76984 | | |
| 76985 | | Expected one of '360', '360sbs', '360tb', 'crosseye', 'dome', 'mono', 'ortho', |
| 76986 | | 'sbs', 'stereo', 'tb', or 'walleye' or a keyword |
| 76987 | | |
| 76988 | | > camera mono |
| 76989 | | |
| 76990 | | > view view1 |
| 76991 | | |
| 76992 | | > view view2 |
| 76993 | | |
| 76994 | | > view view3 |
| 76995 | | |
| 76996 | | > view view5 |
| 76997 | | |
| 76998 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 76999 | | > paper/Chimera sessions/20241208_chimera_for_figures_2.cxs" |
| 77000 | | |
| 77001 | | > cartoon suppressBackboneDisplay false |
| 77002 | | |
| 77003 | | > cartoon suppressBackboneDisplay true |
| 77004 | | |
| 77005 | | > select ~sel & ##selected |
| 77006 | | |
| 77007 | | Nothing selected |
| 77008 | | |
| 77009 | | > cartoon suppressBackboneDisplay false |
| 77010 | | |
| 77011 | | > cartoon suppressBackboneDisplay true |
| 77012 | | |
| 77013 | | > lighting |
| 77014 | | |
| 77015 | | Intensity: 0 |
| 77016 | | Direction: 0.577,-0.577,-0.577 |
| 77017 | | Color: 100,100,100 |
| 77018 | | Fill intensity: 0 |
| 77019 | | Fill direction: -0.2,-0.2,-0.959 |
| 77020 | | Fill color: 100,100,100 |
| 77021 | | Ambient intensity: 1.45 |
| 77022 | | Ambient color: 100,100,100 |
| 77023 | | Depth cue: 1, start 0.5, end 1, color 100,100,100 |
| 77024 | | Shadow: False (depth map size 2048, depth bias 0.005) |
| 77025 | | Multishadows: 0 (max 1024, depth map size 1024, depth bias 0.01) |
| 77026 | | |
| 77027 | | > lighting soft |
| 77028 | | |
| 77029 | | > view view1 |
| 77030 | | |
| 77031 | | > lighting gentle |
| 77032 | | |
| 77033 | | > lighting soft |
| 77034 | | |
| 77035 | | > lighting simple |
| 77036 | | |
| 77037 | | > lighting soft |
| 77038 | | |
| 77039 | | > lighting depthCueStart 0.25 depthCueEnd 1 |
| 77040 | | |
| 77041 | | > lighting depthCueStart 0.75 depthCueEnd 1 |
| 77042 | | |
| 77043 | | > lighting depthCueStart 0.6 depthCueEnd 1 |
| 77044 | | |
| 77045 | | > lighting depthCueStart 0.5vdepthCueEnd 1 |
| 77046 | | |
| 77047 | | Invalid "depthCueStart" argument: Expected a number |
| 77048 | | |
| 77049 | | > lighting depthCueStart 0.5 depthCueEnd 1 |
| 77050 | | |
| 77051 | | > lighting depthCueStart 0.15 depthCueEnd 1 |
| 77052 | | |
| 77053 | | > lighting depthCueStart 0.15 depthCueEnd .5 |
| 77054 | | |
| 77055 | | > lighting depthCueStart 0.15 depthCueEnd 1 |
| 77056 | | |
| 77057 | | > lighting depthCueStart 0.35 depthCueEnd 1 |
| 77058 | | |
| 77059 | | > lighting depthCueStart 0.75 depthCueEnd 1 |
| 77060 | | |
| 77061 | | > lighting depthCueStart 0.65 depthCueEnd 1 |
| 77062 | | |
| 77063 | | > hide #!11 models |
| 77064 | | |
| 77065 | | > show #!11 models |
| 77066 | | |
| 77067 | | > hide #!11 models |
| 77068 | | |
| 77069 | | > hide #!1 models |
| 77070 | | |
| 77071 | | > show #!4 models |
| 77072 | | |
| 77073 | | > color #4 white models |
| 77074 | | |
| 77075 | | > color #4 #ffffff00 models |
| 77076 | | |
| 77077 | | > hide #!4 models |
| 77078 | | |
| 77079 | | > show #!3 models |
| 77080 | | |
| 77081 | | > color #3 white models |
| 77082 | | |
| 77083 | | > color #3 #ffffff00 models |
| 77084 | | |
| 77085 | | > color #3 #ffffffd7 models |
| 77086 | | |
| 77087 | | > color #3 #ffffffd6 models |
| 77088 | | |
| 77089 | | > orient #3 |
| 77090 | | |
| 77091 | | Unknown command: orient #3 |
| 77092 | | |
| 77093 | | > view orient |
| 77094 | | |
| 77095 | | > undo |
| 77096 | | |
| 77097 | | > view |
| 77098 | | |
| 77099 | | > hide #!61 models |
| 77100 | | |
| 77101 | | > view |
| 77102 | | |
| 77103 | | > show #!61 models |
| 77104 | | |
| 77105 | | > color #3 #ffffff80 models |
| 77106 | | |
| 77107 | | > cartoon suppressBackboneDisplay false |
| 77108 | | |
| 77109 | | > hide #!61 models |
| 77110 | | |
| 77111 | | > view |
| 77112 | | |
| 77113 | | > hide #!3 models |
| 77114 | | |
| 77115 | | > show #!3 models |
| 77116 | | |
| 77117 | | > hide #!3 models |
| 77118 | | |
| 77119 | | > show #!4 models |
| 77120 | | |
| 77121 | | > view |
| 77122 | | |
| 77123 | | [Repeated 2 time(s)] |
| 77124 | | |
| 77125 | | > hide #!4 models |
| 77126 | | |
| 77127 | | > show #!3 models |
| 77128 | | |
| 77129 | | > view |
| 77130 | | |
| 77131 | | [Repeated 1 time(s)] |
| 77132 | | |
| 77133 | | > show #!4 models |
| 77134 | | |
| 77135 | | > hide #!3 models |
| 77136 | | |
| 77137 | | > hide #!4 models |
| 77138 | | |
| 77139 | | > show #!2 models |
| 77140 | | |
| 77141 | | > color #2 white models |
| 77142 | | |
| 77143 | | > color #2 #ffffff80 models |
| 77144 | | |
| 77145 | | > view |
| 77146 | | |
| 77147 | | > hide #!2 models |
| 77148 | | |
| 77149 | | > show #!3 models |
| 77150 | | |
| 77151 | | > view |
| 77152 | | |
| 77153 | | > show #!4 models |
| 77154 | | |
| 77155 | | > hide #!3 models |
| 77156 | | |
| 77157 | | > view |
| 77158 | | |
| 77159 | | > hide #!4 models |
| 77160 | | |
| 77161 | | > show #!3 models |
| 77162 | | |
| 77163 | | > view |
| 77164 | | |
| 77165 | | > hide #!3 models |
| 77166 | | |
| 77167 | | > color #5 white models |
| 77168 | | |
| 77169 | | > show #!3 models |
| 77170 | | |
| 77171 | | > hide #!3 models |
| 77172 | | |
| 77173 | | > show #!4 models |
| 77174 | | |
| 77175 | | > hide #!4 models |
| 77176 | | |
| 77177 | | > show #!5 models |
| 77178 | | |
| 77179 | | > color #5 #ffffff7f models |
| 77180 | | |
| 77181 | | > color #5 #ffffff80 models |
| 77182 | | |
| 77183 | | > show #!6 models |
| 77184 | | |
| 77185 | | > color #6 #d6d6d680 models |
| 77186 | | |
| 77187 | | > hide #!5 models |
| 77188 | | |
| 77189 | | > color #6 white models |
| 77190 | | |
| 77191 | | > hide #!6 models |
| 77192 | | |
| 77193 | | > show #!7 models |
| 77194 | | |
| 77195 | | > color #7 white models |
| 77196 | | |
| 77197 | | > color #7 #ffffff80 models |
| 77198 | | |
| 77199 | | > show #!8 models |
| 77200 | | |
| 77201 | | > hide #!7 models |
| 77202 | | |
| 77203 | | > color #8 #d6d6d680 models |
| 77204 | | |
| 77205 | | > show #!9 models |
| 77206 | | |
| 77207 | | > hide #!9 models |
| 77208 | | |
| 77209 | | > show #!10 models |
| 77210 | | |
| 77211 | | > hide #!10 models |
| 77212 | | |
| 77213 | | > hide #!8 models |
| 77214 | | |
| 77215 | | > show #!8 models |
| 77216 | | |
| 77217 | | > color #8 white models |
| 77218 | | |
| 77219 | | > hide #!8 models |
| 77220 | | |
| 77221 | | > show #!10 models |
| 77222 | | |
| 77223 | | > color #10 white models |
| 77224 | | |
| 77225 | | > color #10 #ffffff80 models |
| 77226 | | |
| 77227 | | > hide #!10 models |
| 77228 | | |
| 77229 | | > show #!12 models |
| 77230 | | |
| 77231 | | > color #12 white models |
| 77232 | | |
| 77233 | | > color #12 #ffffff80 models |
| 77234 | | |
| 77235 | | > hide #!12 models |
| 77236 | | |
| 77237 | | > show #!13 models |
| 77238 | | |
| 77239 | | > color #13 white models |
| 77240 | | |
| 77241 | | > color #13 #ffffff7f models |
| 77242 | | |
| 77243 | | > color #13 #ffffff80 models |
| 77244 | | |
| 77245 | | > show #!61 models |
| 77246 | | |
| 77247 | | > hide #!61 models |
| 77248 | | |
| 77249 | | > show #!61 models |
| 77250 | | |
| 77251 | | > hide #!13 models |
| 77252 | | |
| 77253 | | > show #!4 models |
| 77254 | | |
| 77255 | | > hide #!4 models |
| 77256 | | |
| 77257 | | > show #!4 models |
| 77258 | | |
| 77259 | | > hide #!4 models |
| 77260 | | |
| 77261 | | > show #!3 models |
| 77262 | | |
| 77263 | | > color #3 #ffffff00 models |
| 77264 | | |
| 77265 | | > color #3 #ffffff80 models |
| 77266 | | |
| 77267 | | > hide #!3 models |
| 77268 | | |
| 77269 | | > show #!6 models |
| 77270 | | |
| 77271 | | > hide #!6 models |
| 77272 | | |
| 77273 | | > show #!5 models |
| 77274 | | |
| 77275 | | > hide #!5 models |
| 77276 | | |
| 77277 | | > show #!6 models |
| 77278 | | |
| 77279 | | > hide #!6 models |
| 77280 | | |
| 77281 | | > show #!5 models |
| 77282 | | |
| 77283 | | > combine #5 |
| 77284 | | |
| 77285 | | No structures specified |
| 77286 | | |
| 77287 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 77288 | | QTBUG which explains how to reproduce. |
| 77289 | | |
| 77290 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 77291 | | > dataset/Structure |
| 77292 | | > files/leaf_maps/LocalRes_jobs_leaf/job073/relion_locres_filtered.mrc" |
| 77293 | | |
| 77294 | | Opened relion_locres_filtered_job073.mrc as #14, grid size 292,292,292, pixel |
| 77295 | | 1.71, shown at level 0.00473, step 2, values float32 |
| 77296 | | |
| 77297 | | > color #14 white models |
| 77298 | | |
| 77299 | | > select add #14 |
| 77300 | | |
| 77301 | | 2 models selected |
| 77302 | | |
| 77303 | | > view matrix models #14,1,0,0,73.472,0,1,0,15.937,0,0,1,69.235 |
| 77304 | | |
| 77305 | | > view matrix models #14,1,0,0,62.812,0,1,0,74.386,0,0,1,69.429 |
| 77306 | | |
| 77307 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 77308 | | QTBUG which explains how to reproduce. |
| 77309 | | |
| 77310 | | [Repeated 1 time(s)] |
| 77311 | | |
| 77312 | | > fitmap #14 inMap #5 |
| 77313 | | |
| 77314 | | Fit map relion_locres_filtered_job073.mrc in map |
| 77315 | | relion_locres_filtered_job073.mrc using 30984 points |
| 77316 | | correlation = 1, correlation about mean = 1, overlap = 2.419 |
| 77317 | | steps = 164, shift = 7.16, angle = 0.975 degrees |
| 77318 | | |
| 77319 | | Position of relion_locres_filtered_job073.mrc (#14) relative to |
| 77320 | | relion_locres_filtered_job073.mrc (#5) coordinates: |
| 77321 | | Matrix rotation and translation |
| 77322 | | 1.00000000 -0.00007445 0.00001641 0.03811313 |
| 77323 | | 0.00007445 1.00000000 0.00001759 -0.02848362 |
| 77324 | | -0.00001641 -0.00001759 1.00000000 0.00587352 |
| 77325 | | Axis -0.22479056 0.20974425 0.95156532 |
| 77326 | | Axis point 357.40435905 484.90924246 0.00000000 |
| 77327 | | Rotation angle (degrees) 0.00448255 |
| 77328 | | Shift along axis -0.00895271 |
| 77329 | | |
| 77330 | | |
| 77331 | | > select subtract #14 |
| 77332 | | |
| 77333 | | Nothing selected |
| 77334 | | |
| 77335 | | > hide #!5 models |
| 77336 | | |
| 77337 | | > show #!5 models |
| 77338 | | |
| 77339 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 77340 | | QTBUG which explains how to reproduce. |
| 77341 | | |
| 77342 | | > volume #14 step 1 |
| 77343 | | |
| 77344 | | > volume #14 level 0.0055 |
| 77345 | | |
| 77346 | | > ui tool show "Color Zone" |
| 77347 | | |
| 77348 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 77349 | | QTBUG which explains how to reproduce. |
| 77350 | | |
| 77351 | | > color zone #14 near #61 distance 10.26 |
| 77352 | | |
| 77353 | | > hide #!5 models |
| 77354 | | |
| 77355 | | > color zone #14 near #61 distance 10.58 |
| 77356 | | |
| 77357 | | > color zone #14 near #61 distance 2.48 |
| 77358 | | |
| 77359 | | > color zone #14 near #61 distance 2.51 |
| 77360 | | |
| 77361 | | > color zone #14 near #61 distance 6.75 |
| 77362 | | |
| 77363 | | > hide #!61 models |
| 77364 | | |
| 77365 | | > show #!61 models |
| 77366 | | |
| 77367 | | > hide #!14 models |
| 77368 | | |
| 77369 | | > hide #!61 atoms |
| 77370 | | |
| 77371 | | > show #!14 models |
| 77372 | | |
| 77373 | | > color #!61 bychain |
| 77374 | | |
| 77375 | | > undo |
| 77376 | | |
| 77377 | | > hide #!14 models |
| 77378 | | |
| 77379 | | > show #!61 atoms |
| 77380 | | |
| 77381 | | > select add #61 |
| 77382 | | |
| 77383 | | 34068 atoms, 34686 bonds, 4 pseudobonds, 4274 residues, 2 models selected |
| 77384 | | |
| 77385 | | > color sel byhetero |
| 77386 | | |
| 77387 | | [Repeated 1 time(s)] |
| 77388 | | |
| 77389 | | > color (#!61 & sel) byhetero |
| 77390 | | |
| 77391 | | > undo |
| 77392 | | |
| 77393 | | [Repeated 2 time(s)] |
| 77394 | | |
| 77395 | | > select subtract #61 |
| 77396 | | |
| 77397 | | Nothing selected |
| 77398 | | |
| 77399 | | > color #61/A label_purple_v3 |
| 77400 | | |
| 77401 | | > color #61/Q label_purple_v3 |
| 77402 | | |
| 77403 | | > color #61/D alphav3 |
| 77404 | | |
| 77405 | | > color #61/o zetav3 |
| 77406 | | |
| 77407 | | > color #61/l gammav3 |
| 77408 | | |
| 77409 | | > color #61/l #61/m #61/n gammav3 |
| 77410 | | |
| 77411 | | > color #61/d #61/3 #alphav3 |
| 77412 | | |
| 77413 | | Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero', |
| 77414 | | 'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', |
| 77415 | | 'fromcartoons', 'fromribbons', or 'random' or a keyword |
| 77416 | | |
| 77417 | | > color #61/d #61/3 alphav3 |
| 77418 | | |
| 77419 | | > color #61/b #61/c #61/p arf1v3 |
| 77420 | | |
| 77421 | | > hide sticks |
| 77422 | | |
| 77423 | | Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models', |
| 77424 | | 'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword |
| 77425 | | |
| 77426 | | > hide atoms |
| 77427 | | |
| 77428 | | > show #!14 models |
| 77429 | | |
| 77430 | | > color zone #14 near #61 distance 6.75 |
| 77431 | | |
| 77432 | | > color zone #14 near #61 distance 7.14 |
| 77433 | | |
| 77434 | | > color zone #14 near #61 distance 7.47 |
| 77435 | | |
| 77436 | | > color zone #14 near #61 distance 7 |
| 77437 | | |
| 77438 | | [Repeated 1 time(s)] |
| 77439 | | |
| 77440 | | > color zone #14 near #61 distance 7.2 |
| 77441 | | |
| 77442 | | > color zone #14 near #61 distance 7.25 |
| 77443 | | |
| 77444 | | [Repeated 1 time(s)] |
| 77445 | | |
| 77446 | | > volume #14 level 0.006 |
| 77447 | | |
| 77448 | | > show #!12 models |
| 77449 | | |
| 77450 | | > hide #!14 models |
| 77451 | | |
| 77452 | | > view |
| 77453 | | |
| 77454 | | > hide #!61 models |
| 77455 | | |
| 77456 | | > view |
| 77457 | | |
| 77458 | | [Repeated 1 time(s)] |
| 77459 | | |
| 77460 | | > view orient |
| 77461 | | |
| 77462 | | [Repeated 1 time(s)] |
| 77463 | | |
| 77464 | | > view |
| 77465 | | |
| 77466 | | [Repeated 1 time(s)] |
| 77467 | | |
| 77468 | | > view orient |
| 77469 | | |
| 77470 | | > show #!61 models |
| 77471 | | |
| 77472 | | > hide #!61 models |
| 77473 | | |
| 77474 | | > show #!61 models |
| 77475 | | |
| 77476 | | > hide #!61 models |
| 77477 | | |
| 77478 | | > show #!14 models |
| 77479 | | |
| 77480 | | > hide #!12 models |
| 77481 | | |
| 77482 | | > show #!12 models |
| 77483 | | |
| 77484 | | > color #12 #ffffff00 models |
| 77485 | | |
| 77486 | | > view |
| 77487 | | |
| 77488 | | > view orient |
| 77489 | | |
| 77490 | | > turn x 1 90 |
| 77491 | | |
| 77492 | | [Repeated 3 time(s)] |
| 77493 | | |
| 77494 | | > turn y 1 90 |
| 77495 | | |
| 77496 | | [Repeated 3 time(s)] |
| 77497 | | |
| 77498 | | > turn z 1 90 |
| 77499 | | |
| 77500 | | [Repeated 1 time(s)] |
| 77501 | | |
| 77502 | | > turn z 1 10 |
| 77503 | | |
| 77504 | | > hide #!14 models |
| 77505 | | |
| 77506 | | > hide #!12 models |
| 77507 | | |
| 77508 | | > show #!13 models |
| 77509 | | |
| 77510 | | > color #13 #ffffff00 models |
| 77511 | | |
| 77512 | | > show #!14 models |
| 77513 | | |
| 77514 | | > hide #!14 models |
| 77515 | | |
| 77516 | | > hide #!13 models |
| 77517 | | |
| 77518 | | > show #!12 models |
| 77519 | | |
| 77520 | | > set silhouetteWidth 2 |
| 77521 | | |
| 77522 | | > show #!14 models |
| 77523 | | |
| 77524 | | > hide #!14 models |
| 77525 | | |
| 77526 | | > view name view1 |
| 77527 | | |
| 77528 | | > view view1 |
| 77529 | | |
| 77530 | | > turn x 1 90 |
| 77531 | | |
| 77532 | | [Repeated 2 time(s)] |
| 77533 | | |
| 77534 | | > show #!13 models |
| 77535 | | |
| 77536 | | > hide #!13 models |
| 77537 | | |
| 77538 | | > show #!13 models |
| 77539 | | |
| 77540 | | > hide #!13 models |
| 77541 | | |
| 77542 | | > show #!13 models |
| 77543 | | |
| 77544 | | > hide #!13 models |
| 77545 | | |
| 77546 | | > show #!14 models |
| 77547 | | |
| 77548 | | > view view1 |
| 77549 | | |
| 77550 | | > turn x -1 90 |
| 77551 | | |
| 77552 | | > hide #!14 models |
| 77553 | | |
| 77554 | | > show #!14 models |
| 77555 | | |
| 77556 | | > hide #!14 models |
| 77557 | | |
| 77558 | | > view name view2 |
| 77559 | | |
| 77560 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 77561 | | > paper/Chimera sessions/20241209_chimera_for_figures.cxs" |
| 77562 | | |
| 77563 | | > hide #!12 models |
| 77564 | | |
| 77565 | | > show #!5 models |
| 77566 | | |
| 77567 | | > show #!12 models |
| 77568 | | |
| 77569 | | > hide #!12 models |
| 77570 | | |
| 77571 | | > show #!12 models |
| 77572 | | |
| 77573 | | > hide #!12 models |
| 77574 | | |
| 77575 | | > show #!12 models |
| 77576 | | |
| 77577 | | > hide #!12 models |
| 77578 | | |
| 77579 | | > show #!12 models |
| 77580 | | |
| 77581 | | > turn x 1 90 |
| 77582 | | |
| 77583 | | > hide #!5 models |
| 77584 | | |
| 77585 | | > view |
| 77586 | | |
| 77587 | | > view orient |
| 77588 | | |
| 77589 | | > turn x 1 90 |
| 77590 | | |
| 77591 | | [Repeated 2 time(s)] |
| 77592 | | |
| 77593 | | > turn z 1 10 |
| 77594 | | |
| 77595 | | > turn z -1 10 |
| 77596 | | |
| 77597 | | > turn y -1 10 |
| 77598 | | |
| 77599 | | [Repeated 2 time(s)] |
| 77600 | | |
| 77601 | | > turn y 1 10 |
| 77602 | | |
| 77603 | | [Repeated 8 time(s)] |
| 77604 | | |
| 77605 | | > view orient |
| 77606 | | |
| 77607 | | > show #!1 models |
| 77608 | | |
| 77609 | | > hide #!12 models |
| 77610 | | |
| 77611 | | > hide #!1 models |
| 77612 | | |
| 77613 | | > show #!1 models |
| 77614 | | |
| 77615 | | > show #!54 models |
| 77616 | | |
| 77617 | | > hide #!54 models |
| 77618 | | |
| 77619 | | > show #!61 models |
| 77620 | | |
| 77621 | | > hide #!61 models |
| 77622 | | |
| 77623 | | > show #!4 models |
| 77624 | | |
| 77625 | | > view orient |
| 77626 | | |
| 77627 | | > turn x -1 90 |
| 77628 | | |
| 77629 | | > turn y -1 90 |
| 77630 | | |
| 77631 | | [Repeated 1 time(s)] |
| 77632 | | |
| 77633 | | > hide #!1 models |
| 77634 | | |
| 77635 | | > show #!1 models |
| 77636 | | |
| 77637 | | > hide #!4 models |
| 77638 | | |
| 77639 | | > show #!12 models |
| 77640 | | |
| 77641 | | > hide #!1 models |
| 77642 | | |
| 77643 | | > turn x 1 90 |
| 77644 | | |
| 77645 | | > view name view1 |
| 77646 | | |
| 77647 | | > turn x -1 90 |
| 77648 | | |
| 77649 | | > view name view2 |
| 77650 | | |
| 77651 | | > hide #!12 models |
| 77652 | | |
| 77653 | | > show #!1 models |
| 77654 | | |
| 77655 | | > show #39 models |
| 77656 | | |
| 77657 | | > hide #39 models |
| 77658 | | |
| 77659 | | > show #39 models |
| 77660 | | |
| 77661 | | > hide #39 models |
| 77662 | | |
| 77663 | | > show #38 models |
| 77664 | | |
| 77665 | | > hide #38 models |
| 77666 | | |
| 77667 | | > show #38 models |
| 77668 | | |
| 77669 | | > show #39 models |
| 77670 | | |
| 77671 | | > select add #38 |
| 77672 | | |
| 77673 | | 4763 atoms, 4880 bonds, 591 residues, 1 model selected |
| 77674 | | |
| 77675 | | > select add #39 |
| 77676 | | |
| 77677 | | 6619 atoms, 6771 bonds, 824 residues, 2 models selected |
| 77678 | | |
| 77679 | | > cartoon style width 2.5 thickness 0.6 xsection oval modeHelix wrap sides 16 |
| 77680 | | > arrowScale 2.25 |
| 77681 | | |
| 77682 | | > show #!40 models |
| 77683 | | |
| 77684 | | > hide #!40 models |
| 77685 | | |
| 77686 | | > show #!40 models |
| 77687 | | |
| 77688 | | > hide #!40 models |
| 77689 | | |
| 77690 | | > show #41 models |
| 77691 | | |
| 77692 | | > show #42 models |
| 77693 | | |
| 77694 | | > show #!43 models |
| 77695 | | |
| 77696 | | > hide #!43 models |
| 77697 | | |
| 77698 | | > show #!43 models |
| 77699 | | |
| 77700 | | > show #!44 models |
| 77701 | | |
| 77702 | | > show #!45 models |
| 77703 | | |
| 77704 | | > hide #!45 models |
| 77705 | | |
| 77706 | | > show #!46 models |
| 77707 | | |
| 77708 | | > hide #!46 models |
| 77709 | | |
| 77710 | | > hide #!44 models |
| 77711 | | |
| 77712 | | > hide #!43 models |
| 77713 | | |
| 77714 | | > hide #42 models |
| 77715 | | |
| 77716 | | > hide #41 models |
| 77717 | | |
| 77718 | | > select subtract #39 |
| 77719 | | |
| 77720 | | 4763 atoms, 4880 bonds, 591 residues, 1 model selected |
| 77721 | | |
| 77722 | | > select subtract #38 |
| 77723 | | |
| 77724 | | Nothing selected |
| 77725 | | |
| 77726 | | > hide #!1 models |
| 77727 | | |
| 77728 | | > show #!1 models |
| 77729 | | |
| 77730 | | > set silhouetteWidth 1.5 |
| 77731 | | |
| 77732 | | > hide #!1 models |
| 77733 | | |
| 77734 | | > show #!1 models |
| 77735 | | |
| 77736 | | > select add #38 |
| 77737 | | |
| 77738 | | 4763 atoms, 4880 bonds, 591 residues, 1 model selected |
| 77739 | | |
| 77740 | | > select add #39 |
| 77741 | | |
| 77742 | | 6619 atoms, 6771 bonds, 824 residues, 2 models selected |
| 77743 | | |
| 77744 | | > select subtract #38 |
| 77745 | | |
| 77746 | | 1856 atoms, 1891 bonds, 233 residues, 1 model selected |
| 77747 | | |
| 77748 | | > select subtract #39 |
| 77749 | | |
| 77750 | | Nothing selected |
| 77751 | | |
| 77752 | | > hide #39 models |
| 77753 | | |
| 77754 | | > combine #38 |
| 77755 | | |
| 77756 | | > rename #15 20240711_copi_golph3_alpha_M1-T591_N135_H136_Y137_label.cif |
| 77757 | | |
| 77758 | | > hide #!1 models |
| 77759 | | |
| 77760 | | > ui mousemode right select |
| 77761 | | |
| 77762 | | > select #38/D:137 |
| 77763 | | |
| 77764 | | 12 atoms, 12 bonds, 1 residue, 1 model selected |
| 77765 | | |
| 77766 | | > show sel atoms |
| 77767 | | |
| 77768 | | > color sel byhetero |
| 77769 | | |
| 77770 | | > undo |
| 77771 | | |
| 77772 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 77773 | | QTBUG which explains how to reproduce. |
| 77774 | | |
| 77775 | | > select #38/D:137@OH |
| 77776 | | |
| 77777 | | 1 atom, 1 residue, 1 model selected |
| 77778 | | |
| 77779 | | > select #38/D:137@OH |
| 77780 | | |
| 77781 | | 1 atom, 1 residue, 1 model selected |
| 77782 | | |
| 77783 | | > color sel byhetero |
| 77784 | | |
| 77785 | | > select #38/D:136 |
| 77786 | | |
| 77787 | | 10 atoms, 10 bonds, 1 residue, 1 model selected |
| 77788 | | |
| 77789 | | > show sel atoms |
| 77790 | | |
| 77791 | | > select #38/D:136@NE2 |
| 77792 | | |
| 77793 | | 1 atom, 1 residue, 1 model selected |
| 77794 | | |
| 77795 | | > color sel byhetero |
| 77796 | | |
| 77797 | | > select #38/D:135 |
| 77798 | | |
| 77799 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 77800 | | |
| 77801 | | > show sel atoms |
| 77802 | | |
| 77803 | | > select #38/D:135@CG |
| 77804 | | |
| 77805 | | 1 atom, 1 residue, 1 model selected |
| 77806 | | |
| 77807 | | > color sel byhetero |
| 77808 | | |
| 77809 | | > select #38/D:135@ND2 |
| 77810 | | |
| 77811 | | 1 atom, 1 residue, 1 model selected |
| 77812 | | |
| 77813 | | > color sel byhetero |
| 77814 | | |
| 77815 | | > select #38/D:135@OD1 |
| 77816 | | |
| 77817 | | 1 atom, 1 residue, 1 model selected |
| 77818 | | |
| 77819 | | > color sel byhetero |
| 77820 | | |
| 77821 | | > select #38/D:136@CD2 |
| 77822 | | |
| 77823 | | 1 atom, 1 residue, 1 model selected |
| 77824 | | |
| 77825 | | > color sel byhetero |
| 77826 | | |
| 77827 | | > select #38/D:136@CE1 |
| 77828 | | |
| 77829 | | 1 atom, 1 residue, 1 model selected |
| 77830 | | |
| 77831 | | > color sel byhetero |
| 77832 | | |
| 77833 | | > select #38/D:136@ND1 |
| 77834 | | |
| 77835 | | 1 atom, 1 residue, 1 model selected |
| 77836 | | |
| 77837 | | > color sel byhetero |
| 77838 | | |
| 77839 | | > select clear |
| 77840 | | |
| 77841 | | > hide #38 models |
| 77842 | | |
| 77843 | | > show #38 models |
| 77844 | | |
| 77845 | | > hide #38 models |
| 77846 | | |
| 77847 | | > show #38 models |
| 77848 | | |
| 77849 | | > hide #38 models |
| 77850 | | |
| 77851 | | > show #38 models |
| 77852 | | |
| 77853 | | > hide #38 models |
| 77854 | | |
| 77855 | | > show #38 models |
| 77856 | | |
| 77857 | | > select add #38 |
| 77858 | | |
| 77859 | | 4763 atoms, 4880 bonds, 591 residues, 1 model selected |
| 77860 | | |
| 77861 | | > color #38 alphav3 |
| 77862 | | |
| 77863 | | > hide sel atoms |
| 77864 | | |
| 77865 | | > select subtract #38 |
| 77866 | | |
| 77867 | | Nothing selected |
| 77868 | | |
| 77869 | | > hide #38 models |
| 77870 | | |
| 77871 | | > hide #15 models |
| 77872 | | |
| 77873 | | > show #15 models |
| 77874 | | |
| 77875 | | > select #15/D:155 |
| 77876 | | |
| 77877 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 77878 | | |
| 77879 | | > select #15/D:136 |
| 77880 | | |
| 77881 | | 10 atoms, 10 bonds, 1 residue, 1 model selected |
| 77882 | | |
| 77883 | | > select #15/D:137 |
| 77884 | | |
| 77885 | | 12 atoms, 12 bonds, 1 residue, 1 model selected |
| 77886 | | |
| 77887 | | > show sel atoms |
| 77888 | | |
| 77889 | | > select #15/D:136 |
| 77890 | | |
| 77891 | | 10 atoms, 10 bonds, 1 residue, 1 model selected |
| 77892 | | |
| 77893 | | > show sel atoms |
| 77894 | | |
| 77895 | | > hide sel atoms |
| 77896 | | |
| 77897 | | > show sel atoms |
| 77898 | | |
| 77899 | | > select add #15 |
| 77900 | | |
| 77901 | | 4763 atoms, 4880 bonds, 591 residues, 1 model selected |
| 77902 | | |
| 77903 | | > select up |
| 77904 | | |
| 77905 | | 130811 atoms, 132877 bonds, 18813 residues, 52 models selected |
| 77906 | | |
| 77907 | | > select up |
| 77908 | | |
| 77909 | | 130811 atoms, 132877 bonds, 3 pseudobonds, 18813 residues, 55 models selected |
| 77910 | | |
| 77911 | | > select down |
| 77912 | | |
| 77913 | | 130811 atoms, 132877 bonds, 18813 residues, 54 models selected |
| 77914 | | |
| 77915 | | > select down |
| 77916 | | |
| 77917 | | 4763 atoms, 4880 bonds, 591 residues, 3 models selected |
| 77918 | | |
| 77919 | | > cartoon style width 2.5 thickness 0.6 xsection oval modeHelix wrap sides 16 |
| 77920 | | > arrowScale 2.25 |
| 77921 | | |
| 77922 | | > select #15/D:137@C |
| 77923 | | |
| 77924 | | 1 atom, 1 residue, 1 model selected |
| 77925 | | |
| 77926 | | > hide sel atoms |
| 77927 | | |
| 77928 | | [Repeated 1 time(s)] |
| 77929 | | |
| 77930 | | > select #15/D:136@C |
| 77931 | | |
| 77932 | | 1 atom, 1 residue, 1 model selected |
| 77933 | | |
| 77934 | | > hide sel atoms |
| 77935 | | |
| 77936 | | > select #15/D:136@O |
| 77937 | | |
| 77938 | | 1 atom, 1 residue, 1 model selected |
| 77939 | | |
| 77940 | | > hide sel atoms |
| 77941 | | |
| 77942 | | > select #15/D:137@O |
| 77943 | | |
| 77944 | | 1 atom, 1 residue, 1 model selected |
| 77945 | | |
| 77946 | | > hide sel atoms |
| 77947 | | |
| 77948 | | > select clear |
| 77949 | | |
| 77950 | | > select #15/D:137@CG |
| 77951 | | |
| 77952 | | 1 atom, 1 residue, 1 model selected |
| 77953 | | |
| 77954 | | > select #15/D:137@CB |
| 77955 | | |
| 77956 | | 1 atom, 1 residue, 1 model selected |
| 77957 | | |
| 77958 | | > select #15/D:137@OH |
| 77959 | | |
| 77960 | | 1 atom, 1 residue, 1 model selected |
| 77961 | | |
| 77962 | | > color sel byhetero |
| 77963 | | |
| 77964 | | > select #15/D:136@NE2 |
| 77965 | | |
| 77966 | | 1 atom, 1 residue, 1 model selected |
| 77967 | | |
| 77968 | | > color sel byhetero |
| 77969 | | |
| 77970 | | > select #15/D:136@ND1 |
| 77971 | | |
| 77972 | | 1 atom, 1 residue, 1 model selected |
| 77973 | | |
| 77974 | | > color sel byhetero |
| 77975 | | |
| 77976 | | > select #15/D:136@N |
| 77977 | | |
| 77978 | | 1 atom, 1 residue, 1 model selected |
| 77979 | | |
| 77980 | | > hide sel atoms |
| 77981 | | |
| 77982 | | > select #15/D:135 |
| 77983 | | |
| 77984 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 77985 | | |
| 77986 | | > show sel atoms |
| 77987 | | |
| 77988 | | > select #15/D:135@O |
| 77989 | | |
| 77990 | | 1 atom, 1 residue, 1 model selected |
| 77991 | | |
| 77992 | | > hide sel atoms |
| 77993 | | |
| 77994 | | > select #15/D:135@N |
| 77995 | | |
| 77996 | | 1 atom, 1 residue, 1 model selected |
| 77997 | | |
| 77998 | | > hide sel atoms |
| 77999 | | |
| 78000 | | > select #15/D:135 |
| 78001 | | |
| 78002 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 78003 | | |
| 78004 | | > select clear |
| 78005 | | |
| 78006 | | [Repeated 1 time(s)] |
| 78007 | | |
| 78008 | | > hide sel atoms |
| 78009 | | |
| 78010 | | > select #15/D:135@C |
| 78011 | | |
| 78012 | | 1 atom, 1 residue, 1 model selected |
| 78013 | | |
| 78014 | | > hide sel atoms |
| 78015 | | |
| 78016 | | > select #15/D:135@ND2 |
| 78017 | | |
| 78018 | | 1 atom, 1 residue, 1 model selected |
| 78019 | | |
| 78020 | | > color sel byhetero |
| 78021 | | |
| 78022 | | > select #15/D:135@OD1 |
| 78023 | | |
| 78024 | | 1 atom, 1 residue, 1 model selected |
| 78025 | | |
| 78026 | | > color sel byhetero |
| 78027 | | |
| 78028 | | > size stickRadius 0.5 |
| 78029 | | |
| 78030 | | Changed 168994 bond radii |
| 78031 | | |
| 78032 | | > size stickRadius 0.2 |
| 78033 | | |
| 78034 | | Changed 168994 bond radii |
| 78035 | | |
| 78036 | | > size stickRadius 0.3 |
| 78037 | | |
| 78038 | | Changed 168994 bond radii |
| 78039 | | |
| 78040 | | > select clear |
| 78041 | | |
| 78042 | | > size stickRadius 0.4 |
| 78043 | | |
| 78044 | | Changed 168994 bond radii |
| 78045 | | |
| 78046 | | > hide #15 models |
| 78047 | | |
| 78048 | | > combine #38 |
| 78049 | | |
| 78050 | | > cartoon style width 2.5 thickness 0.6 xsection oval modeHelix wrap sides 16 |
| 78051 | | > arrowScale 2.25 |
| 78052 | | |
| 78053 | | > select #16/D:94 |
| 78054 | | |
| 78055 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 78056 | | |
| 78057 | | > rename #16 20240711_copi_golph3_alpha_M1-T591_D94.cif |
| 78058 | | |
| 78059 | | > show sel atoms |
| 78060 | | |
| 78061 | | > color sel byhetero |
| 78062 | | |
| 78063 | | > hide sel atoms |
| 78064 | | |
| 78065 | | [Repeated 1 time(s)] |
| 78066 | | |
| 78067 | | > select #16/D:94@N |
| 78068 | | |
| 78069 | | 1 atom, 1 residue, 1 model selected |
| 78070 | | |
| 78071 | | > hide sel atoms |
| 78072 | | |
| 78073 | | [Repeated 1 time(s)] |
| 78074 | | |
| 78075 | | > select #16/D:94@O |
| 78076 | | |
| 78077 | | 1 atom, 1 residue, 1 model selected |
| 78078 | | |
| 78079 | | > hide sel atoms |
| 78080 | | |
| 78081 | | > select #16/D:94@C |
| 78082 | | |
| 78083 | | 1 atom, 1 residue, 1 model selected |
| 78084 | | |
| 78085 | | > hide sel atoms |
| 78086 | | |
| 78087 | | > select #16/D:94 |
| 78088 | | |
| 78089 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 78090 | | |
| 78091 | | > select #16/D:94 |
| 78092 | | |
| 78093 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 78094 | | |
| 78095 | | > select #16/D:94@CB |
| 78096 | | |
| 78097 | | 1 atom, 1 residue, 1 model selected |
| 78098 | | |
| 78099 | | > select clear |
| 78100 | | |
| 78101 | | > size stickRadius 0.4 |
| 78102 | | |
| 78103 | | Changed 173874 bond radii |
| 78104 | | |
| 78105 | | > select #16/D:94@CB |
| 78106 | | |
| 78107 | | 1 atom, 1 residue, 1 model selected |
| 78108 | | |
| 78109 | | > select #16/D:94@CB |
| 78110 | | |
| 78111 | | 1 atom, 1 residue, 1 model selected |
| 78112 | | |
| 78113 | | > size stickRadius 0.4 |
| 78114 | | |
| 78115 | | Changed 173874 bond radii |
| 78116 | | |
| 78117 | | > select add #16 |
| 78118 | | |
| 78119 | | 4763 atoms, 4880 bonds, 591 residues, 1 model selected |
| 78120 | | |
| 78121 | | > size stickRadius 0.4 |
| 78122 | | |
| 78123 | | Changed 173874 bond radii |
| 78124 | | |
| 78125 | | > size stickRadius 0.3 |
| 78126 | | |
| 78127 | | Changed 173874 bond radii |
| 78128 | | |
| 78129 | | > select subtract #16 |
| 78130 | | |
| 78131 | | Nothing selected |
| 78132 | | |
| 78133 | | > show #15 models |
| 78134 | | |
| 78135 | | > select add #15 |
| 78136 | | |
| 78137 | | 4763 atoms, 4880 bonds, 591 residues, 1 model selected |
| 78138 | | |
| 78139 | | > size stickRadius 0.3 |
| 78140 | | |
| 78141 | | Changed 173874 bond radii |
| 78142 | | |
| 78143 | | > select subtract #15 |
| 78144 | | |
| 78145 | | Nothing selected |
| 78146 | | |
| 78147 | | > hide #16 models |
| 78148 | | |
| 78149 | | > hide #15 models |
| 78150 | | |
| 78151 | | > show #15 models |
| 78152 | | |
| 78153 | | > show #16 models |
| 78154 | | |
| 78155 | | > hide #16 models |
| 78156 | | |
| 78157 | | > hide #15 models |
| 78158 | | |
| 78159 | | > show #15 models |
| 78160 | | |
| 78161 | | > show #16 models |
| 78162 | | |
| 78163 | | > hide #16 models |
| 78164 | | |
| 78165 | | > hide #15 models |
| 78166 | | |
| 78167 | | > combine #38 |
| 78168 | | |
| 78169 | | > rename #17 20240711_copi_golph3_alpha_M1-T591_D290_D292.cif |
| 78170 | | |
| 78171 | | > select add #17 |
| 78172 | | |
| 78173 | | 4763 atoms, 4880 bonds, 591 residues, 1 model selected |
| 78174 | | |
| 78175 | | > cartoon style width 2.5 thickness 0.6 xsection oval modeHelix wrap sides 16 |
| 78176 | | > arrowScale 2.25 |
| 78177 | | |
| 78178 | | > show #16 models |
| 78179 | | |
| 78180 | | > select add #16 |
| 78181 | | |
| 78182 | | 9526 atoms, 9760 bonds, 1182 residues, 2 models selected |
| 78183 | | |
| 78184 | | > select subtract #17 |
| 78185 | | |
| 78186 | | 4763 atoms, 4880 bonds, 591 residues, 1 model selected |
| 78187 | | |
| 78188 | | > hide #17 models |
| 78189 | | |
| 78190 | | > show #17 models |
| 78191 | | |
| 78192 | | > select subtract #16 |
| 78193 | | |
| 78194 | | Nothing selected |
| 78195 | | |
| 78196 | | > hide #16 models |
| 78197 | | |
| 78198 | | > show #16 models |
| 78199 | | |
| 78200 | | > show #15 models |
| 78201 | | |
| 78202 | | > hide #16 models |
| 78203 | | |
| 78204 | | > hide #17 models |
| 78205 | | |
| 78206 | | > hide #15 models |
| 78207 | | |
| 78208 | | > show #17 models |
| 78209 | | |
| 78210 | | > select #17/D:290 |
| 78211 | | |
| 78212 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 78213 | | |
| 78214 | | > show sel atoms |
| 78215 | | |
| 78216 | | > color sel byhetero |
| 78217 | | |
| 78218 | | > select #17/D:291 |
| 78219 | | |
| 78220 | | 10 atoms, 10 bonds, 1 residue, 1 model selected |
| 78221 | | |
| 78222 | | > show sel atoms |
| 78223 | | |
| 78224 | | > color sel byhetero |
| 78225 | | |
| 78226 | | > select #17/D:292 |
| 78227 | | |
| 78228 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 78229 | | |
| 78230 | | > show sel atoms |
| 78231 | | |
| 78232 | | > color sel byhetero |
| 78233 | | |
| 78234 | | > select #17/D:292@O |
| 78235 | | |
| 78236 | | 1 atom, 1 residue, 1 model selected |
| 78237 | | |
| 78238 | | > hide sel atoms |
| 78239 | | |
| 78240 | | > select #17/D:292@N |
| 78241 | | |
| 78242 | | 1 atom, 1 residue, 1 model selected |
| 78243 | | |
| 78244 | | > hide sel atoms |
| 78245 | | |
| 78246 | | > select #17/D:292@C |
| 78247 | | |
| 78248 | | 1 atom, 1 residue, 1 model selected |
| 78249 | | |
| 78250 | | > hide sel atoms |
| 78251 | | |
| 78252 | | > select #17/D:291@O |
| 78253 | | |
| 78254 | | 1 atom, 1 residue, 1 model selected |
| 78255 | | |
| 78256 | | > hide sel atoms |
| 78257 | | |
| 78258 | | > select #17/D:291@N |
| 78259 | | |
| 78260 | | 1 atom, 1 residue, 1 model selected |
| 78261 | | |
| 78262 | | > hide sel atoms |
| 78263 | | |
| 78264 | | > select #17/D:291@C |
| 78265 | | |
| 78266 | | 1 atom, 1 residue, 1 model selected |
| 78267 | | |
| 78268 | | > hide sel atoms |
| 78269 | | |
| 78270 | | > select #17/D:290@O |
| 78271 | | |
| 78272 | | 1 atom, 1 residue, 1 model selected |
| 78273 | | |
| 78274 | | > select #17/D:290@O |
| 78275 | | |
| 78276 | | 1 atom, 1 residue, 1 model selected |
| 78277 | | |
| 78278 | | > hide sel atoms |
| 78279 | | |
| 78280 | | > select #17/D:290@N |
| 78281 | | |
| 78282 | | 1 atom, 1 residue, 1 model selected |
| 78283 | | |
| 78284 | | > hide sel atoms |
| 78285 | | |
| 78286 | | > select #17/D:290@C |
| 78287 | | |
| 78288 | | 1 atom, 1 residue, 1 model selected |
| 78289 | | |
| 78290 | | > hide sel atoms |
| 78291 | | |
| 78292 | | > select add #17 |
| 78293 | | |
| 78294 | | 4763 atoms, 4880 bonds, 591 residues, 1 model selected |
| 78295 | | |
| 78296 | | > select subtract #17 |
| 78297 | | |
| 78298 | | Nothing selected |
| 78299 | | |
| 78300 | | > hide #17 models |
| 78301 | | |
| 78302 | | > show #17 models |
| 78303 | | |
| 78304 | | > show #16 models |
| 78305 | | |
| 78306 | | > show #15 models |
| 78307 | | |
| 78308 | | > hide #15 models |
| 78309 | | |
| 78310 | | > hide #16 models |
| 78311 | | |
| 78312 | | > hide #17 models |
| 78313 | | |
| 78314 | | > combine #38 |
| 78315 | | |
| 78316 | | > select add #18 |
| 78317 | | |
| 78318 | | 4763 atoms, 4880 bonds, 591 residues, 1 model selected |
| 78319 | | |
| 78320 | | > cartoon style width 2.5 thickness 0.6 xsection oval modeHelix wrap sides 16 |
| 78321 | | > arrowScale 2.25 |
| 78322 | | |
| 78323 | | [Repeated 1 time(s)] |
| 78324 | | |
| 78325 | | > select subtract #18 |
| 78326 | | |
| 78327 | | Nothing selected |
| 78328 | | |
| 78329 | | > show #17 models |
| 78330 | | |
| 78331 | | > hide #18 models |
| 78332 | | |
| 78333 | | > hide #17 models |
| 78334 | | |
| 78335 | | > show #18 models |
| 78336 | | |
| 78337 | | > show #17 models |
| 78338 | | |
| 78339 | | > hide #18 models |
| 78340 | | |
| 78341 | | > show #16 models |
| 78342 | | |
| 78343 | | > hide #16 models |
| 78344 | | |
| 78345 | | > show #15 models |
| 78346 | | |
| 78347 | | > hide #15 models |
| 78348 | | |
| 78349 | | > hide #17 models |
| 78350 | | |
| 78351 | | > show #18 models |
| 78352 | | |
| 78353 | | > rename #18 20240711_copi_golph3_alpha_M1-T591.cif |
| 78354 | | |
| 78355 | | > close #18 |
| 78356 | | |
| 78357 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 78358 | | > paper/Chimera sessions/20241209_chimera_for_figures_v2.cxs" |
| 78359 | | |
| 78360 | | > combine #50 |
| 78361 | | |
| 78362 | | > show #50 models |
| 78363 | | |
| 78364 | | > hide #50 models |
| 78365 | | |
| 78366 | | > select add #18 |
| 78367 | | |
| 78368 | | 1200 atoms, 1218 bonds, 150 residues, 1 model selected |
| 78369 | | |
| 78370 | | > cartoon style width 2.5 thickness 0.6 xsection oval modeHelix wrap sides 16 |
| 78371 | | > arrowScale 2.25 |
| 78372 | | |
| 78373 | | > select subtract #18 |
| 78374 | | |
| 78375 | | Nothing selected |
| 78376 | | |
| 78377 | | > hide #18 models |
| 78378 | | |
| 78379 | | > show #18 models |
| 78380 | | |
| 78381 | | > select #18/I:73 |
| 78382 | | |
| 78383 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 78384 | | |
| 78385 | | > show sel atoms |
| 78386 | | |
| 78387 | | > color sel byhetero |
| 78388 | | |
| 78389 | | > select #18/I:72 |
| 78390 | | |
| 78391 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 78392 | | |
| 78393 | | > color sel byhetero |
| 78394 | | |
| 78395 | | > show sel atoms |
| 78396 | | |
| 78397 | | > select #18/I:74 |
| 78398 | | |
| 78399 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 78400 | | |
| 78401 | | > color sel byhetero |
| 78402 | | |
| 78403 | | > show sel atoms |
| 78404 | | |
| 78405 | | > select #18/I:72@N |
| 78406 | | |
| 78407 | | 1 atom, 1 residue, 1 model selected |
| 78408 | | |
| 78409 | | > hide sel atoms |
| 78410 | | |
| 78411 | | > select #18/I:72@O |
| 78412 | | |
| 78413 | | 1 atom, 1 residue, 1 model selected |
| 78414 | | |
| 78415 | | > hide sel atoms |
| 78416 | | |
| 78417 | | [Repeated 1 time(s)] |
| 78418 | | |
| 78419 | | > select #18/I:72@C |
| 78420 | | |
| 78421 | | 1 atom, 1 residue, 1 model selected |
| 78422 | | |
| 78423 | | > hide sel atoms |
| 78424 | | |
| 78425 | | > select #18/I:73@N |
| 78426 | | |
| 78427 | | 1 atom, 1 residue, 1 model selected |
| 78428 | | |
| 78429 | | > hide sel atoms |
| 78430 | | |
| 78431 | | > select #18/I:73@O |
| 78432 | | |
| 78433 | | 1 atom, 1 residue, 1 model selected |
| 78434 | | |
| 78435 | | > hide sel atoms |
| 78436 | | |
| 78437 | | > select #18/I:73@C |
| 78438 | | |
| 78439 | | 1 atom, 1 residue, 1 model selected |
| 78440 | | |
| 78441 | | > hide sel atoms |
| 78442 | | |
| 78443 | | > select #18/I:74@N |
| 78444 | | |
| 78445 | | 1 atom, 1 residue, 1 model selected |
| 78446 | | |
| 78447 | | > hide sel atoms |
| 78448 | | |
| 78449 | | > select #18/I:74@O |
| 78450 | | |
| 78451 | | 1 atom, 1 residue, 1 model selected |
| 78452 | | |
| 78453 | | > hide sel atoms |
| 78454 | | |
| 78455 | | > select #18/I:74@C |
| 78456 | | |
| 78457 | | 1 atom, 1 residue, 1 model selected |
| 78458 | | |
| 78459 | | > hide sel atoms |
| 78460 | | |
| 78461 | | > select clear |
| 78462 | | |
| 78463 | | > hide #18 models |
| 78464 | | |
| 78465 | | > show #!43 models |
| 78466 | | |
| 78467 | | > show #55 models |
| 78468 | | |
| 78469 | | > hide #55 models |
| 78470 | | |
| 78471 | | > show #!54 models |
| 78472 | | |
| 78473 | | > select #43/E:849 |
| 78474 | | |
| 78475 | | 14 atoms, 15 bonds, 1 residue, 1 model selected |
| 78476 | | |
| 78477 | | > show sel atoms |
| 78478 | | |
| 78479 | | > select #43/E:850 |
| 78480 | | |
| 78481 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 78482 | | |
| 78483 | | > show sel atoms |
| 78484 | | |
| 78485 | | > select #43/E:851 |
| 78486 | | |
| 78487 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 78488 | | |
| 78489 | | > show sel atoms |
| 78490 | | |
| 78491 | | > select #43/E:852 |
| 78492 | | |
| 78493 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 78494 | | |
| 78495 | | > show sel atoms |
| 78496 | | |
| 78497 | | > select #54/A:13 |
| 78498 | | |
| 78499 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 78500 | | |
| 78501 | | > select #54/A:12 |
| 78502 | | |
| 78503 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 78504 | | |
| 78505 | | > select #54/A:11 |
| 78506 | | |
| 78507 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 78508 | | |
| 78509 | | > select #54/A:11 |
| 78510 | | |
| 78511 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 78512 | | |
| 78513 | | > select add #54 |
| 78514 | | |
| 78515 | | 229 atoms, 228 bonds, 31 residues, 1 model selected |
| 78516 | | |
| 78517 | | > select #43/E:852@N |
| 78518 | | |
| 78519 | | 1 atom, 1 residue, 1 model selected |
| 78520 | | |
| 78521 | | > hide sel atoms |
| 78522 | | |
| 78523 | | > select #43/E:850 |
| 78524 | | |
| 78525 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 78526 | | |
| 78527 | | > hide sel atoms |
| 78528 | | |
| 78529 | | > select #43/E:852@CA |
| 78530 | | |
| 78531 | | 1 atom, 1 residue, 1 model selected |
| 78532 | | |
| 78533 | | > hide sel atoms |
| 78534 | | |
| 78535 | | [Repeated 1 time(s)] |
| 78536 | | |
| 78537 | | > select add #43 |
| 78538 | | |
| 78539 | | 1872 atoms, 1904 bonds, 243 residues, 1 model selected |
| 78540 | | |
| 78541 | | > select subtract #43 |
| 78542 | | |
| 78543 | | Nothing selected |
| 78544 | | |
| 78545 | | > select add #43 |
| 78546 | | |
| 78547 | | 1872 atoms, 1904 bonds, 243 residues, 1 model selected |
| 78548 | | |
| 78549 | | > hide sel atoms |
| 78550 | | |
| 78551 | | > select subtract #43 |
| 78552 | | |
| 78553 | | Nothing selected |
| 78554 | | |
| 78555 | | > hide #!43 models |
| 78556 | | |
| 78557 | | > hide #!54 models |
| 78558 | | |
| 78559 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 78560 | | > paper/Chimera sessions/20241209_chimera_for_figures_v3.cxs" |
| 78561 | | |
| 78562 | | > rename #18 20240711_copi_golph3_zeta1_S72_I73_D74.cif |
| 78563 | | |
| 78564 | | > show #47 models |
| 78565 | | |
| 78566 | | > combine E47 |
| 78567 | | |
| 78568 | | Expected a keyword |
| 78569 | | |
| 78570 | | > combine #47 |
| 78571 | | |
| 78572 | | > hide #47 models |
| 78573 | | |
| 78574 | | > select add #19 |
| 78575 | | |
| 78576 | | 1163 atoms, 1177 bonds, 149 residues, 1 model selected |
| 78577 | | |
| 78578 | | > select up |
| 78579 | | |
| 78580 | | 142700 atoms, 145032 bonds, 20294 residues, 56 models selected |
| 78581 | | |
| 78582 | | > select down |
| 78583 | | |
| 78584 | | 1163 atoms, 1177 bonds, 149 residues, 3 models selected |
| 78585 | | |
| 78586 | | > cartoon style width 2.5 thickness 0.6 xsection oval modeHelix wrap sides 16 |
| 78587 | | > arrowScale 2.25 |
| 78588 | | |
| 78589 | | > select clear |
| 78590 | | |
| 78591 | | > select #19/H:446 |
| 78592 | | |
| 78593 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 78594 | | |
| 78595 | | > select #19/H:447 |
| 78596 | | |
| 78597 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 78598 | | |
| 78599 | | > show sel atoms |
| 78600 | | |
| 78601 | | > color sel byhetero |
| 78602 | | |
| 78603 | | > select #19/H:445 |
| 78604 | | |
| 78605 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 78606 | | |
| 78607 | | > color sel byhetero |
| 78608 | | |
| 78609 | | > show sel atoms |
| 78610 | | |
| 78611 | | > select #19/H:447@O |
| 78612 | | |
| 78613 | | 1 atom, 1 residue, 1 model selected |
| 78614 | | |
| 78615 | | > hide sel atoms |
| 78616 | | |
| 78617 | | > select #19/H:447@N |
| 78618 | | |
| 78619 | | 1 atom, 1 residue, 1 model selected |
| 78620 | | |
| 78621 | | > hide sel atoms |
| 78622 | | |
| 78623 | | > select #19/H:447@C |
| 78624 | | |
| 78625 | | 1 atom, 1 residue, 1 model selected |
| 78626 | | |
| 78627 | | > hide sel atoms |
| 78628 | | |
| 78629 | | > select #19/H:445@O |
| 78630 | | |
| 78631 | | 1 atom, 1 residue, 1 model selected |
| 78632 | | |
| 78633 | | > hide sel atoms |
| 78634 | | |
| 78635 | | > select #19/H:445@C |
| 78636 | | |
| 78637 | | 1 atom, 1 residue, 1 model selected |
| 78638 | | |
| 78639 | | > hide sel atoms |
| 78640 | | |
| 78641 | | > select #19/H:445@N |
| 78642 | | |
| 78643 | | 1 atom, 1 residue, 1 model selected |
| 78644 | | |
| 78645 | | > hide sel atoms |
| 78646 | | |
| 78647 | | > select #19/H:445@CA |
| 78648 | | |
| 78649 | | 1 atom, 1 residue, 1 model selected |
| 78650 | | |
| 78651 | | > hide sel atoms |
| 78652 | | |
| 78653 | | > undo |
| 78654 | | |
| 78655 | | > select add #19 |
| 78656 | | |
| 78657 | | 1163 atoms, 1177 bonds, 149 residues, 1 model selected |
| 78658 | | |
| 78659 | | > rename #19 20240711_copi_golph3_gamma1_K300-F448_D445_E447.cif |
| 78660 | | |
| 78661 | | > select subtract #19 |
| 78662 | | |
| 78663 | | Nothing selected |
| 78664 | | |
| 78665 | | > hide #19 models |
| 78666 | | |
| 78667 | | > show #19 models |
| 78668 | | |
| 78669 | | > hide #19 models |
| 78670 | | |
| 78671 | | > show #34.8 models |
| 78672 | | |
| 78673 | | > show #!1 models |
| 78674 | | |
| 78675 | | > hide #34.8 models |
| 78676 | | |
| 78677 | | > hide #!34 models |
| 78678 | | |
| 78679 | | > show #!54 models |
| 78680 | | |
| 78681 | | > hide #!54 models |
| 78682 | | |
| 78683 | | > show #55 models |
| 78684 | | |
| 78685 | | > combine #55 |
| 78686 | | |
| 78687 | | > hide #55 models |
| 78688 | | |
| 78689 | | > hide #!1 models |
| 78690 | | |
| 78691 | | > select add #20 |
| 78692 | | |
| 78693 | | 1971 atoms, 2002 bonds, 244 residues, 1 model selected |
| 78694 | | |
| 78695 | | > cartoon style width 2.5 thickness 0.6 xsection oval modeHelix wrap sides 16 |
| 78696 | | > arrowScale 2.25 |
| 78697 | | |
| 78698 | | > select subtract #20 |
| 78699 | | |
| 78700 | | Nothing selected |
| 78701 | | |
| 78702 | | > select add #20 |
| 78703 | | |
| 78704 | | 1971 atoms, 2002 bonds, 244 residues, 1 model selected |
| 78705 | | |
| 78706 | | > cartoon style width 2.5 thickness 0.6 xsection oval modeHelix wrap sides 16 |
| 78707 | | > arrowScale 2.25 |
| 78708 | | |
| 78709 | | > select subtract #20 |
| 78710 | | |
| 78711 | | Nothing selected |
| 78712 | | |
| 78713 | | > hide #20 models |
| 78714 | | |
| 78715 | | > show #20 models |
| 78716 | | |
| 78717 | | > rename #20 20240711_copi_golph3_golph3_.cif |
| 78718 | | |
| 78719 | | > rename #20 20240711_copi_golph3_golph3_S55-K298.cif |
| 78720 | | |
| 78721 | | > combine #20 |
| 78722 | | |
| 78723 | | > rename #21 20240711_copi_golph3_golph3_S55-K298.cif |
| 78724 | | |
| 78725 | | > select add #21 |
| 78726 | | |
| 78727 | | 1971 atoms, 2002 bonds, 244 residues, 1 model selected |
| 78728 | | |
| 78729 | | > select subtract #21 |
| 78730 | | |
| 78731 | | Nothing selected |
| 78732 | | |
| 78733 | | > hide #20 models |
| 78734 | | |
| 78735 | | > combine #20 |
| 78736 | | |
| 78737 | | > rename #22 20240711_copi_golph3_golph3_S55-K298.cif |
| 78738 | | |
| 78739 | | > combine #20 |
| 78740 | | |
| 78741 | | > rename #23 20240711_copi_golph3_golph3_S55-K298.cif |
| 78742 | | |
| 78743 | | > combine #20 |
| 78744 | | |
| 78745 | | > rename #24 20240711_copi_golph3_golph3_S55-K298.cif |
| 78746 | | |
| 78747 | | > combine #20 |
| 78748 | | |
| 78749 | | [Repeated 1 time(s)] |
| 78750 | | |
| 78751 | | > rename #25 20240711_copi_golph3_golph3_S55-K298.cif |
| 78752 | | |
| 78753 | | > rename #26 20240711_copi_golph3_golph3_S55-K298.cif |
| 78754 | | |
| 78755 | | > combine #20 |
| 78756 | | |
| 78757 | | [Repeated 1 time(s)] |
| 78758 | | |
| 78759 | | > rename #27 20240711_copi_golph3_golph3_S55-K298.cif |
| 78760 | | |
| 78761 | | > rename #28 20240711_copi_golph3_golph3_S55-K298.cif |
| 78762 | | |
| 78763 | | > select add #21 |
| 78764 | | |
| 78765 | | 1971 atoms, 2002 bonds, 244 residues, 1 model selected |
| 78766 | | |
| 78767 | | > show #20 models |
| 78768 | | |
| 78769 | | > hide #20 models |
| 78770 | | |
| 78771 | | > select add #22 |
| 78772 | | |
| 78773 | | 3942 atoms, 4004 bonds, 488 residues, 2 models selected |
| 78774 | | |
| 78775 | | > select add #23 |
| 78776 | | |
| 78777 | | 5913 atoms, 6006 bonds, 732 residues, 3 models selected |
| 78778 | | |
| 78779 | | > select add #24 |
| 78780 | | |
| 78781 | | 7884 atoms, 8008 bonds, 976 residues, 4 models selected |
| 78782 | | |
| 78783 | | > select add #25 |
| 78784 | | |
| 78785 | | 9855 atoms, 10010 bonds, 1220 residues, 5 models selected |
| 78786 | | |
| 78787 | | > select add #26 |
| 78788 | | |
| 78789 | | 11826 atoms, 12012 bonds, 1464 residues, 6 models selected |
| 78790 | | |
| 78791 | | > select add #27 |
| 78792 | | |
| 78793 | | 13797 atoms, 14014 bonds, 1708 residues, 7 models selected |
| 78794 | | |
| 78795 | | > select add #28 |
| 78796 | | |
| 78797 | | 15768 atoms, 16016 bonds, 1952 residues, 8 models selected |
| 78798 | | |
| 78799 | | > cartoon style width 2.5 thickness 0.6 xsection oval modeHelix wrap sides 16 |
| 78800 | | > arrowScale 2.25 |
| 78801 | | |
| 78802 | | > select subtract #28 |
| 78803 | | |
| 78804 | | 13797 atoms, 14014 bonds, 1708 residues, 7 models selected |
| 78805 | | |
| 78806 | | > select subtract #27 |
| 78807 | | |
| 78808 | | 11826 atoms, 12012 bonds, 1464 residues, 6 models selected |
| 78809 | | |
| 78810 | | > select subtract #26 |
| 78811 | | |
| 78812 | | 9855 atoms, 10010 bonds, 1220 residues, 5 models selected |
| 78813 | | |
| 78814 | | > select subtract #25 |
| 78815 | | |
| 78816 | | 7884 atoms, 8008 bonds, 976 residues, 4 models selected |
| 78817 | | |
| 78818 | | > select subtract #24 |
| 78819 | | |
| 78820 | | 5913 atoms, 6006 bonds, 732 residues, 3 models selected |
| 78821 | | |
| 78822 | | > select subtract #23 |
| 78823 | | |
| 78824 | | 3942 atoms, 4004 bonds, 488 residues, 2 models selected |
| 78825 | | |
| 78826 | | > select subtract #22 |
| 78827 | | |
| 78828 | | 1971 atoms, 2002 bonds, 244 residues, 1 model selected |
| 78829 | | |
| 78830 | | > select subtract #21 |
| 78831 | | |
| 78832 | | Nothing selected |
| 78833 | | |
| 78834 | | > hide #28 models |
| 78835 | | |
| 78836 | | > hide #27 models |
| 78837 | | |
| 78838 | | > hide #26 models |
| 78839 | | |
| 78840 | | > hide #24 models |
| 78841 | | |
| 78842 | | > hide #25 models |
| 78843 | | |
| 78844 | | > hide #23 models |
| 78845 | | |
| 78846 | | > hide #22 models |
| 78847 | | |
| 78848 | | > hide #21 models |
| 78849 | | |
| 78850 | | > show #20 models |
| 78851 | | |
| 78852 | | > select #20/A:81 |
| 78853 | | |
| 78854 | | 14 atoms, 15 bonds, 1 residue, 1 model selected |
| 78855 | | |
| 78856 | | > show sel atoms |
| 78857 | | |
| 78858 | | > color sel byhetero |
| 78859 | | |
| 78860 | | > select #20/A:90 |
| 78861 | | |
| 78862 | | 11 atoms, 10 bonds, 1 residue, 1 model selected |
| 78863 | | |
| 78864 | | > color sel byhetero |
| 78865 | | |
| 78866 | | > show sel atoms |
| 78867 | | |
| 78868 | | > select #20/A:172 |
| 78869 | | |
| 78870 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 78871 | | |
| 78872 | | > show sel atoms |
| 78873 | | |
| 78874 | | > select #20/A:171 |
| 78875 | | |
| 78876 | | 11 atoms, 10 bonds, 1 residue, 1 model selected |
| 78877 | | |
| 78878 | | > show sel atoms |
| 78879 | | |
| 78880 | | > select #20/A:174 |
| 78881 | | |
| 78882 | | 11 atoms, 10 bonds, 1 residue, 1 model selected |
| 78883 | | |
| 78884 | | > select #20/A:174 |
| 78885 | | |
| 78886 | | 11 atoms, 10 bonds, 1 residue, 1 model selected |
| 78887 | | |
| 78888 | | > show sel atoms |
| 78889 | | |
| 78890 | | > select #20/A:172@CB |
| 78891 | | |
| 78892 | | 1 atom, 1 residue, 1 model selected |
| 78893 | | |
| 78894 | | > hide sel atoms |
| 78895 | | |
| 78896 | | [Repeated 3 time(s)] |
| 78897 | | |
| 78898 | | > select #20/A:172@ND2 |
| 78899 | | |
| 78900 | | 1 atom, 1 residue, 1 model selected |
| 78901 | | |
| 78902 | | > hide sel atoms |
| 78903 | | |
| 78904 | | > select #20/A:172@CG |
| 78905 | | |
| 78906 | | 1 atom, 1 residue, 1 model selected |
| 78907 | | |
| 78908 | | > hide sel atoms |
| 78909 | | |
| 78910 | | > select #20/A:172@OD1 |
| 78911 | | |
| 78912 | | 1 atom, 1 residue, 1 model selected |
| 78913 | | |
| 78914 | | > hide sel atoms |
| 78915 | | |
| 78916 | | [Repeated 2 time(s)] |
| 78917 | | |
| 78918 | | > select #20/A:172@O |
| 78919 | | |
| 78920 | | 1 atom, 1 residue, 1 model selected |
| 78921 | | |
| 78922 | | > hide sel atoms |
| 78923 | | |
| 78924 | | > select #20/A:172@N |
| 78925 | | |
| 78926 | | 1 atom, 1 residue, 1 model selected |
| 78927 | | |
| 78928 | | > hide sel atoms |
| 78929 | | |
| 78930 | | > select #20/A:171@C |
| 78931 | | |
| 78932 | | 1 atom, 1 residue, 1 model selected |
| 78933 | | |
| 78934 | | > select clear |
| 78935 | | |
| 78936 | | > select #20/A:171@O |
| 78937 | | |
| 78938 | | 1 atom, 1 residue, 1 model selected |
| 78939 | | |
| 78940 | | > hide sel atoms |
| 78941 | | |
| 78942 | | > select #20/A:171@C |
| 78943 | | |
| 78944 | | 1 atom, 1 residue, 1 model selected |
| 78945 | | |
| 78946 | | > hide sel atoms |
| 78947 | | |
| 78948 | | [Repeated 1 time(s)] |
| 78949 | | |
| 78950 | | > select #20/A:171@N |
| 78951 | | |
| 78952 | | 1 atom, 1 residue, 1 model selected |
| 78953 | | |
| 78954 | | > hide sel atoms |
| 78955 | | |
| 78956 | | > select #20/A:174@N |
| 78957 | | |
| 78958 | | 1 atom, 1 residue, 1 model selected |
| 78959 | | |
| 78960 | | > select #20/A:174@O |
| 78961 | | |
| 78962 | | 1 atom, 1 residue, 1 model selected |
| 78963 | | |
| 78964 | | > hide sel atoms |
| 78965 | | |
| 78966 | | > select #20/A:174@N |
| 78967 | | |
| 78968 | | 1 atom, 1 residue, 1 model selected |
| 78969 | | |
| 78970 | | > hide sel atoms |
| 78971 | | |
| 78972 | | > select #20/A:174@C |
| 78973 | | |
| 78974 | | 1 atom, 1 residue, 1 model selected |
| 78975 | | |
| 78976 | | > hide sel atoms |
| 78977 | | |
| 78978 | | > select #20/A:81@N |
| 78979 | | |
| 78980 | | 1 atom, 1 residue, 1 model selected |
| 78981 | | |
| 78982 | | > hide sel atoms |
| 78983 | | |
| 78984 | | > select #20/A:81@O |
| 78985 | | |
| 78986 | | 1 atom, 1 residue, 1 model selected |
| 78987 | | |
| 78988 | | > hide sel atoms |
| 78989 | | |
| 78990 | | > select #20/A:81@C |
| 78991 | | |
| 78992 | | 1 atom, 1 residue, 1 model selected |
| 78993 | | |
| 78994 | | > hide sel atoms |
| 78995 | | |
| 78996 | | > select #20/A:90@N |
| 78997 | | |
| 78998 | | 1 atom, 1 residue, 1 model selected |
| 78999 | | |
| 79000 | | > hide sel atoms |
| 79001 | | |
| 79002 | | > select #20/A:90@O |
| 79003 | | |
| 79004 | | 1 atom, 1 residue, 1 model selected |
| 79005 | | |
| 79006 | | > hide sel atoms |
| 79007 | | |
| 79008 | | > select clear |
| 79009 | | |
| 79010 | | > open 3KN1 |
| 79011 | | |
| 79012 | | Summary of feedback from opening 3KN1 fetched from pdb |
| 79013 | | --- |
| 79014 | | note | Fetching compressed mmCIF 3kn1 from http://files.rcsb.org/download/3kn1.cif |
| 79015 | | |
| 79016 | | 3kn1 title: |
| 79017 | | Crystal Structure of Golgi Phosphoprotein 3 N-term Truncation Variant [more |
| 79018 | | info...] |
| 79019 | | |
| 79020 | | Chain information for 3kn1 #29 |
| 79021 | | --- |
| 79022 | | Chain | Description | UniProt |
| 79023 | | A | Golgi phosphoprotein 3 | GOLP3_HUMAN 52-298 |
| 79024 | | |
| 79025 | | Non-standard residues in 3kn1 #29 |
| 79026 | | --- |
| 79027 | | SO4 — sulfate ion |
| 79028 | | |
| 79029 | | 3kn1 mmCIF Assemblies |
| 79030 | | --- |
| 79031 | | 1| author_defined_assembly |
| 79032 | | 2| software_defined_assembly |
| 79033 | | |
| 79034 | | 5 atoms have alternate locations. Control/examine alternate locations with |
| 79035 | | Altloc Explorer [start tool...] or the altlocs command. |
| 79036 | | |
| 79037 | | > ui tool show Matchmaker |
| 79038 | | |
| 79039 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 79040 | | QTBUG which explains how to reproduce. |
| 79041 | | |
| 79042 | | > matchmaker #29 to #20 |
| 79043 | | |
| 79044 | | Parameters |
| 79045 | | --- |
| 79046 | | Chain pairing | bb |
| 79047 | | Alignment algorithm | Needleman-Wunsch |
| 79048 | | Similarity matrix | BLOSUM-62 |
| 79049 | | SS fraction | 0.3 |
| 79050 | | Gap open (HH/SS/other) | 18/18/6 |
| 79051 | | Gap extend | 1 |
| 79052 | | SS matrix | | | H | S | O |
| 79053 | | ---|---|---|--- |
| 79054 | | H | 6 | -9 | -6 |
| 79055 | | S | | 6 | -6 |
| 79056 | | O | | | 4 |
| 79057 | | Iteration cutoff | 2 |
| 79058 | | |
| 79059 | | Matchmaker 20240711_copi_golph3_golph3_S55-K298.cif, chain A (#20) with 3kn1, |
| 79060 | | chain A (#29), sequence alignment score = 1235.7 |
| 79061 | | RMSD between 212 pruned atom pairs is 0.595 angstroms; (across all 239 pairs: |
| 79062 | | 1.555) |
| 79063 | | |
| 79064 | | |
| 79065 | | > hide #20 models |
| 79066 | | |
| 79067 | | > show #20 models |
| 79068 | | |
| 79069 | | > select #29/A:80 |
| 79070 | | |
| 79071 | | 11 atoms, 11 bonds, 1 residue, 1 model selected |
| 79072 | | |
| 79073 | | > show sel atoms |
| 79074 | | |
| 79075 | | > select #29/A:81 |
| 79076 | | |
| 79077 | | 14 atoms, 15 bonds, 1 residue, 1 model selected |
| 79078 | | |
| 79079 | | > show sel atoms |
| 79080 | | |
| 79081 | | > select #29/A:80 |
| 79082 | | |
| 79083 | | 11 atoms, 11 bonds, 1 residue, 1 model selected |
| 79084 | | |
| 79085 | | > hide sel atoms |
| 79086 | | |
| 79087 | | > select #29/A:171 |
| 79088 | | |
| 79089 | | 11 atoms, 10 bonds, 1 residue, 1 model selected |
| 79090 | | |
| 79091 | | > show sel atoms |
| 79092 | | |
| 79093 | | > select #20/A:172@C |
| 79094 | | |
| 79095 | | 1 atom, 1 residue, 1 model selected |
| 79096 | | |
| 79097 | | > show sel atoms |
| 79098 | | |
| 79099 | | [Repeated 1 time(s)] |
| 79100 | | |
| 79101 | | > select #20/A:172 |
| 79102 | | |
| 79103 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 79104 | | |
| 79105 | | > show sel atoms |
| 79106 | | |
| 79107 | | > select add #20 |
| 79108 | | |
| 79109 | | 1971 atoms, 2002 bonds, 244 residues, 1 model selected |
| 79110 | | |
| 79111 | | > select subtract #20 |
| 79112 | | |
| 79113 | | Nothing selected |
| 79114 | | |
| 79115 | | > show #!1 models |
| 79116 | | |
| 79117 | | > volume #1 level 0.008 |
| 79118 | | |
| 79119 | | > hide #20 models |
| 79120 | | |
| 79121 | | > show #20 models |
| 79122 | | |
| 79123 | | > hide #29 models |
| 79124 | | |
| 79125 | | > show #29 models |
| 79126 | | |
| 79127 | | > hide #!1 models |
| 79128 | | |
| 79129 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 79130 | | > paper/Chimera sessions/20241209_chimera_for_figures_v4.cxs" |
| 79131 | | |
| 79132 | | > hide #29 models |
| 79133 | | |
| 79134 | | > select #20/A:81 |
| 79135 | | |
| 79136 | | 14 atoms, 15 bonds, 1 residue, 1 model selected |
| 79137 | | |
| 79138 | | > show #!1 models |
| 79139 | | |
| 79140 | | > hide #!1 models |
| 79141 | | |
| 79142 | | > select #20/A:172@O |
| 79143 | | |
| 79144 | | 1 atom, 1 residue, 1 model selected |
| 79145 | | |
| 79146 | | > hide sel atoms |
| 79147 | | |
| 79148 | | > select #20/A:172@C |
| 79149 | | |
| 79150 | | 1 atom, 1 residue, 1 model selected |
| 79151 | | |
| 79152 | | > hide sel atoms |
| 79153 | | |
| 79154 | | > select #20/A:172@N |
| 79155 | | |
| 79156 | | 1 atom, 1 residue, 1 model selected |
| 79157 | | |
| 79158 | | > hide sel atoms |
| 79159 | | |
| 79160 | | > select #20/A:172 |
| 79161 | | |
| 79162 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 79163 | | |
| 79164 | | > select #20/A:172 |
| 79165 | | |
| 79166 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 79167 | | |
| 79168 | | > select #20/A:81 |
| 79169 | | |
| 79170 | | 14 atoms, 15 bonds, 1 residue, 1 model selected |
| 79171 | | |
| 79172 | | > hide sel atoms |
| 79173 | | |
| 79174 | | > select add #20 |
| 79175 | | |
| 79176 | | 1971 atoms, 2002 bonds, 244 residues, 1 model selected |
| 79177 | | |
| 79178 | | > select subtract #20 |
| 79179 | | |
| 79180 | | Nothing selected |
| 79181 | | |
| 79182 | | > select add #20 |
| 79183 | | |
| 79184 | | 1971 atoms, 2002 bonds, 244 residues, 1 model selected |
| 79185 | | |
| 79186 | | > size stickRadius 0.4 |
| 79187 | | |
| 79188 | | Changed 201117 bond radii |
| 79189 | | |
| 79190 | | > size stickRadius 0.3 |
| 79191 | | |
| 79192 | | Changed 201117 bond radii |
| 79193 | | |
| 79194 | | > select subtract #20 |
| 79195 | | |
| 79196 | | Nothing selected |
| 79197 | | |
| 79198 | | > rename #20 20240711_copi_golph3_golph3_S55-K298_PI4P_binding_site.cif |
| 79199 | | |
| 79200 | | > hide #20 models |
| 79201 | | |
| 79202 | | > show #21 models |
| 79203 | | |
| 79204 | | > select add #21 |
| 79205 | | |
| 79206 | | 1971 atoms, 2002 bonds, 244 residues, 1 model selected |
| 79207 | | |
| 79208 | | > select up |
| 79209 | | |
| 79210 | | 162373 atoms, 165000 bonds, 22744 residues, 66 models selected |
| 79211 | | |
| 79212 | | > select down |
| 79213 | | |
| 79214 | | 1971 atoms, 2002 bonds, 244 residues, 3 models selected |
| 79215 | | |
| 79216 | | > cartoon style width 2.5 thickness 0.6 xsection oval modeHelix wrap sides 16 |
| 79217 | | > arrowScale 2.25 |
| 79218 | | |
| 79219 | | > select subtract #21 |
| 79220 | | |
| 79221 | | Nothing selected |
| 79222 | | |
| 79223 | | > select #21/A:200 |
| 79224 | | |
| 79225 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 79226 | | |
| 79227 | | > show sel atoms |
| 79228 | | |
| 79229 | | > style sel stick |
| 79230 | | |
| 79231 | | Changed 7 atom styles |
| 79232 | | |
| 79233 | | > select #21/A:191 |
| 79234 | | |
| 79235 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 79236 | | |
| 79237 | | > show sel atoms |
| 79238 | | |
| 79239 | | > color sel byhetero |
| 79240 | | |
| 79241 | | > select #21/A:200@CA |
| 79242 | | |
| 79243 | | 1 atom, 1 residue, 1 model selected |
| 79244 | | |
| 79245 | | > select #21/A:200@CA |
| 79246 | | |
| 79247 | | 1 atom, 1 residue, 1 model selected |
| 79248 | | |
| 79249 | | > color sel byhetero |
| 79250 | | |
| 79251 | | > select #21/A:200@CA |
| 79252 | | |
| 79253 | | 1 atom, 1 residue, 1 model selected |
| 79254 | | |
| 79255 | | > select #21/A:189 |
| 79256 | | |
| 79257 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 79258 | | |
| 79259 | | > color sel byhetero |
| 79260 | | |
| 79261 | | > show sel atoms |
| 79262 | | |
| 79263 | | > select #21/A:189@N |
| 79264 | | |
| 79265 | | 1 atom, 1 residue, 1 model selected |
| 79266 | | |
| 79267 | | > select #21/A:189@O |
| 79268 | | |
| 79269 | | 1 atom, 1 residue, 1 model selected |
| 79270 | | |
| 79271 | | > hide sel atoms |
| 79272 | | |
| 79273 | | > select #21/A:189@C |
| 79274 | | |
| 79275 | | 1 atom, 1 residue, 1 model selected |
| 79276 | | |
| 79277 | | > hide sel atoms |
| 79278 | | |
| 79279 | | > select #21/A:189@N |
| 79280 | | |
| 79281 | | 1 atom, 1 residue, 1 model selected |
| 79282 | | |
| 79283 | | > hide sel atoms |
| 79284 | | |
| 79285 | | > select #21/A:191@O |
| 79286 | | |
| 79287 | | 1 atom, 1 residue, 1 model selected |
| 79288 | | |
| 79289 | | > hide sel atoms |
| 79290 | | |
| 79291 | | > select #21/A:191@N |
| 79292 | | |
| 79293 | | 1 atom, 1 residue, 1 model selected |
| 79294 | | |
| 79295 | | > hide sel atoms |
| 79296 | | |
| 79297 | | [Repeated 1 time(s)] |
| 79298 | | |
| 79299 | | > select #21/A:191@CA |
| 79300 | | |
| 79301 | | 1 atom, 1 residue, 1 model selected |
| 79302 | | |
| 79303 | | > hide sel atoms |
| 79304 | | |
| 79305 | | > show sel atoms |
| 79306 | | |
| 79307 | | > select #21/A:191 |
| 79308 | | |
| 79309 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 79310 | | |
| 79311 | | > select #21/A:200@O |
| 79312 | | |
| 79313 | | 1 atom, 1 residue, 1 model selected |
| 79314 | | |
| 79315 | | > hide sel atoms |
| 79316 | | |
| 79317 | | [Repeated 2 time(s)] |
| 79318 | | |
| 79319 | | > select #21/A:200@N |
| 79320 | | |
| 79321 | | 1 atom, 1 residue, 1 model selected |
| 79322 | | |
| 79323 | | > hide sel atoms |
| 79324 | | |
| 79325 | | > select #21/A:200@CG2 |
| 79326 | | |
| 79327 | | 1 atom, 1 residue, 1 model selected |
| 79328 | | |
| 79329 | | > select clear |
| 79330 | | |
| 79331 | | > select #21/A:200@CA |
| 79332 | | |
| 79333 | | 1 atom, 1 residue, 1 model selected |
| 79334 | | |
| 79335 | | > color sel byhetero |
| 79336 | | |
| 79337 | | > select #21/A:200@CG2 |
| 79338 | | |
| 79339 | | 1 atom, 1 residue, 1 model selected |
| 79340 | | |
| 79341 | | > color sel byhetero |
| 79342 | | |
| 79343 | | > select #21/A:200@OG1 |
| 79344 | | |
| 79345 | | 1 atom, 1 residue, 1 model selected |
| 79346 | | |
| 79347 | | > color sel byhetero |
| 79348 | | |
| 79349 | | > select #21/A:200 |
| 79350 | | |
| 79351 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 79352 | | |
| 79353 | | > select clear |
| 79354 | | |
| 79355 | | > rename #21 20240711_copi_golph3_golph3_S55-K298_T189_K191_T200.cif |
| 79356 | | |
| 79357 | | > hide #21 models |
| 79358 | | |
| 79359 | | > show #21 models |
| 79360 | | |
| 79361 | | > show #20 models |
| 79362 | | |
| 79363 | | > hide #20 models |
| 79364 | | |
| 79365 | | > hide #21 models |
| 79366 | | |
| 79367 | | > show #22 models |
| 79368 | | |
| 79369 | | > select #22/A:183 |
| 79370 | | |
| 79371 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 79372 | | |
| 79373 | | > color sel byhetero |
| 79374 | | |
| 79375 | | > show sel atoms |
| 79376 | | |
| 79377 | | > select #22/A:179 |
| 79378 | | |
| 79379 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 79380 | | |
| 79381 | | > show sel cartoons |
| 79382 | | |
| 79383 | | > show sel atoms |
| 79384 | | |
| 79385 | | > color sel byhetero |
| 79386 | | |
| 79387 | | > select #22/A:175 |
| 79388 | | |
| 79389 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 79390 | | |
| 79391 | | > color sel byhetero |
| 79392 | | |
| 79393 | | > show sel atoms |
| 79394 | | |
| 79395 | | > select #22/A:183@O |
| 79396 | | |
| 79397 | | 1 atom, 1 residue, 1 model selected |
| 79398 | | |
| 79399 | | > hide sel atoms |
| 79400 | | |
| 79401 | | [Repeated 2 time(s)] |
| 79402 | | |
| 79403 | | > select #22/A:183@N |
| 79404 | | |
| 79405 | | 1 atom, 1 residue, 1 model selected |
| 79406 | | |
| 79407 | | > hide sel atoms |
| 79408 | | |
| 79409 | | > select #22/A:183@C |
| 79410 | | |
| 79411 | | 1 atom, 1 residue, 1 model selected |
| 79412 | | |
| 79413 | | > hide sel atoms |
| 79414 | | |
| 79415 | | Drag select of 2 residues |
| 79416 | | |
| 79417 | | > select #22/A:179 |
| 79418 | | |
| 79419 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 79420 | | |
| 79421 | | > select #22/A:179@O |
| 79422 | | |
| 79423 | | 1 atom, 1 residue, 1 model selected |
| 79424 | | |
| 79425 | | > hide sel atoms |
| 79426 | | |
| 79427 | | > select #22/A:179@C |
| 79428 | | |
| 79429 | | 1 atom, 1 residue, 1 model selected |
| 79430 | | |
| 79431 | | > hide sel atoms |
| 79432 | | |
| 79433 | | > select #22/A:179@N |
| 79434 | | |
| 79435 | | 1 atom, 1 residue, 1 model selected |
| 79436 | | |
| 79437 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 79438 | | QTBUG which explains how to reproduce. |
| 79439 | | |
| 79440 | | > select #22/A:179@N |
| 79441 | | |
| 79442 | | 1 atom, 1 residue, 1 model selected |
| 79443 | | |
| 79444 | | > select #22/A:179@N |
| 79445 | | |
| 79446 | | 1 atom, 1 residue, 1 model selected |
| 79447 | | |
| 79448 | | > hide sel atoms |
| 79449 | | |
| 79450 | | > select #22/A:175@O |
| 79451 | | |
| 79452 | | 1 atom, 1 residue, 1 model selected |
| 79453 | | |
| 79454 | | > hide sel atoms |
| 79455 | | |
| 79456 | | > select #22/A:175@N |
| 79457 | | |
| 79458 | | 1 atom, 1 residue, 1 model selected |
| 79459 | | |
| 79460 | | > hide sel atoms |
| 79461 | | |
| 79462 | | > select #22/A:175@C |
| 79463 | | |
| 79464 | | 1 atom, 1 residue, 1 model selected |
| 79465 | | |
| 79466 | | > hide sel atoms |
| 79467 | | |
| 79468 | | > select clear |
| 79469 | | |
| 79470 | | > rename #22 20240711_copi_golph3_golph3_S55-K298_E175_K179_E183.cif |
| 79471 | | |
| 79472 | | > select #22/A:182 |
| 79473 | | |
| 79474 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 79475 | | |
| 79476 | | > show sel atoms |
| 79477 | | |
| 79478 | | > hide sel atoms |
| 79479 | | |
| 79480 | | > select #22/A:182 |
| 79481 | | |
| 79482 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 79483 | | |
| 79484 | | > select #22/A:183 |
| 79485 | | |
| 79486 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 79487 | | |
| 79488 | | > select clear |
| 79489 | | |
| 79490 | | > hide #22 models |
| 79491 | | |
| 79492 | | > show #23 models |
| 79493 | | |
| 79494 | | > rename #23 20240711_copi_golph3_golph3_S55-K298_K179_only.cif |
| 79495 | | |
| 79496 | | > select #23/A:179 |
| 79497 | | |
| 79498 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 79499 | | |
| 79500 | | > show sel atoms |
| 79501 | | |
| 79502 | | > color sel byhetero |
| 79503 | | |
| 79504 | | > select #23/A:179@O |
| 79505 | | |
| 79506 | | 1 atom, 1 residue, 1 model selected |
| 79507 | | |
| 79508 | | > hide sel atoms |
| 79509 | | |
| 79510 | | > select #23/A:179@C |
| 79511 | | |
| 79512 | | 1 atom, 1 residue, 1 model selected |
| 79513 | | |
| 79514 | | > hide sel atoms |
| 79515 | | |
| 79516 | | > select #23/A:179@N |
| 79517 | | |
| 79518 | | 1 atom, 1 residue, 1 model selected |
| 79519 | | |
| 79520 | | > select #23/A:179@N |
| 79521 | | |
| 79522 | | 1 atom, 1 residue, 1 model selected |
| 79523 | | |
| 79524 | | > hide sel atoms |
| 79525 | | |
| 79526 | | > select clear |
| 79527 | | |
| 79528 | | > hide #23 models |
| 79529 | | |
| 79530 | | > show #24 models |
| 79531 | | |
| 79532 | | > select #24/A:55 |
| 79533 | | |
| 79534 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 79535 | | |
| 79536 | | > select #24/A:56 |
| 79537 | | |
| 79538 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 79539 | | |
| 79540 | | > show sel atoms |
| 79541 | | |
| 79542 | | > color sel byhetero |
| 79543 | | |
| 79544 | | > select #24/A:56@N |
| 79545 | | |
| 79546 | | 1 atom, 1 residue, 1 model selected |
| 79547 | | |
| 79548 | | > hide sel atoms |
| 79549 | | |
| 79550 | | > select #24/A:56@O |
| 79551 | | |
| 79552 | | 1 atom, 1 residue, 1 model selected |
| 79553 | | |
| 79554 | | > hide sel atoms |
| 79555 | | |
| 79556 | | > select #24/A:56@C |
| 79557 | | |
| 79558 | | 1 atom, 1 residue, 1 model selected |
| 79559 | | |
| 79560 | | > hide sel atoms |
| 79561 | | |
| 79562 | | > select clear |
| 79563 | | |
| 79564 | | > select #24/A:55 |
| 79565 | | |
| 79566 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 79567 | | |
| 79568 | | > select #24/A:56 |
| 79569 | | |
| 79570 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 79571 | | |
| 79572 | | > select clear |
| 79573 | | |
| 79574 | | > rename #24 20240711_copi_golph3_golph3_S55-K298_K56.cif |
| 79575 | | |
| 79576 | | > hide #24 models |
| 79577 | | |
| 79578 | | > show #25 models |
| 79579 | | |
| 79580 | | > show #18 models |
| 79581 | | |
| 79582 | | > hide #18 models |
| 79583 | | |
| 79584 | | > select #25/A:223 |
| 79585 | | |
| 79586 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 79587 | | |
| 79588 | | > show sel atoms |
| 79589 | | |
| 79590 | | > color sel byhetero |
| 79591 | | |
| 79592 | | > select clear |
| 79593 | | |
| 79594 | | [Repeated 1 time(s)] |
| 79595 | | |
| 79596 | | > select #25/A:224 |
| 79597 | | |
| 79598 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 79599 | | |
| 79600 | | > color sel byhetero |
| 79601 | | |
| 79602 | | > show sel atoms |
| 79603 | | |
| 79604 | | > select #25/A:225 |
| 79605 | | |
| 79606 | | 14 atoms, 15 bonds, 1 residue, 1 model selected |
| 79607 | | |
| 79608 | | > color sel byhetero |
| 79609 | | |
| 79610 | | > show sel atoms |
| 79611 | | |
| 79612 | | > select #25/A:226 |
| 79613 | | |
| 79614 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 79615 | | |
| 79616 | | > show sel atoms |
| 79617 | | |
| 79618 | | > color sel byhetero |
| 79619 | | |
| 79620 | | > select #25/A:227 |
| 79621 | | |
| 79622 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 79623 | | |
| 79624 | | > color sel byhetero |
| 79625 | | |
| 79626 | | > show sel atoms |
| 79627 | | |
| 79628 | | > select #25/A:231 |
| 79629 | | |
| 79630 | | 11 atoms, 10 bonds, 1 residue, 1 model selected |
| 79631 | | |
| 79632 | | > show sel atoms |
| 79633 | | |
| 79634 | | > color sel byhetero |
| 79635 | | |
| 79636 | | > select #25/A:231 |
| 79637 | | |
| 79638 | | 11 atoms, 10 bonds, 1 residue, 1 model selected |
| 79639 | | |
| 79640 | | > show #18 models |
| 79641 | | |
| 79642 | | > select #18/I:21 |
| 79643 | | |
| 79644 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 79645 | | |
| 79646 | | > select #18/I:22 |
| 79647 | | |
| 79648 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 79649 | | |
| 79650 | | > show sel atoms |
| 79651 | | |
| 79652 | | [Repeated 1 time(s)] |
| 79653 | | |
| 79654 | | > hide sel atoms |
| 79655 | | |
| 79656 | | > select #18/I:21 |
| 79657 | | |
| 79658 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 79659 | | |
| 79660 | | > show sel atoms |
| 79661 | | |
| 79662 | | > hide sel atoms |
| 79663 | | |
| 79664 | | > select clear |
| 79665 | | |
| 79666 | | > select #25/A:231 |
| 79667 | | |
| 79668 | | 11 atoms, 10 bonds, 1 residue, 1 model selected |
| 79669 | | |
| 79670 | | > hide sel cartoons |
| 79671 | | |
| 79672 | | > show sel cartoons |
| 79673 | | |
| 79674 | | > hide sel atoms |
| 79675 | | |
| 79676 | | > hide #18 models |
| 79677 | | |
| 79678 | | > select #25/A:223@N |
| 79679 | | |
| 79680 | | 1 atom, 1 residue, 1 model selected |
| 79681 | | |
| 79682 | | > hide sel atoms |
| 79683 | | |
| 79684 | | > select #25/A:223@C |
| 79685 | | |
| 79686 | | 1 atom, 1 residue, 1 model selected |
| 79687 | | |
| 79688 | | > select #25/A:223@C |
| 79689 | | |
| 79690 | | 1 atom, 1 residue, 1 model selected |
| 79691 | | |
| 79692 | | > hide sel atoms |
| 79693 | | |
| 79694 | | > select #25/A:223@O |
| 79695 | | |
| 79696 | | 1 atom, 1 residue, 1 model selected |
| 79697 | | |
| 79698 | | > hide sel atoms |
| 79699 | | |
| 79700 | | > select #25/A:224@N |
| 79701 | | |
| 79702 | | 1 atom, 1 residue, 1 model selected |
| 79703 | | |
| 79704 | | > hide sel atoms |
| 79705 | | |
| 79706 | | > select #25/A:224@C |
| 79707 | | |
| 79708 | | 1 atom, 1 residue, 1 model selected |
| 79709 | | |
| 79710 | | > hide sel atoms |
| 79711 | | |
| 79712 | | > select #25/A:224@O |
| 79713 | | |
| 79714 | | 1 atom, 1 residue, 1 model selected |
| 79715 | | |
| 79716 | | > hide sel atoms |
| 79717 | | |
| 79718 | | > select #25/A:225@N |
| 79719 | | |
| 79720 | | 1 atom, 1 residue, 1 model selected |
| 79721 | | |
| 79722 | | > hide sel atoms |
| 79723 | | |
| 79724 | | > select #25/A:225@O |
| 79725 | | |
| 79726 | | 1 atom, 1 residue, 1 model selected |
| 79727 | | |
| 79728 | | > hide sel atoms |
| 79729 | | |
| 79730 | | > select #25/A:226@N |
| 79731 | | |
| 79732 | | 1 atom, 1 residue, 1 model selected |
| 79733 | | |
| 79734 | | > hide sel atoms |
| 79735 | | |
| 79736 | | > select #25/A:226@O |
| 79737 | | |
| 79738 | | 1 atom, 1 residue, 1 model selected |
| 79739 | | |
| 79740 | | > hide sel atoms |
| 79741 | | |
| 79742 | | > select #25/A:226@C |
| 79743 | | |
| 79744 | | 1 atom, 1 residue, 1 model selected |
| 79745 | | |
| 79746 | | > hide sel atoms |
| 79747 | | |
| 79748 | | > select #25/A:227@N |
| 79749 | | |
| 79750 | | 1 atom, 1 residue, 1 model selected |
| 79751 | | |
| 79752 | | > hide sel atoms |
| 79753 | | |
| 79754 | | > select #25/A:227 |
| 79755 | | |
| 79756 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 79757 | | |
| 79758 | | > select #25/A:227@C |
| 79759 | | |
| 79760 | | 1 atom, 1 residue, 1 model selected |
| 79761 | | |
| 79762 | | > hide sel atoms |
| 79763 | | |
| 79764 | | > select #25/A:227@O |
| 79765 | | |
| 79766 | | 1 atom, 1 residue, 1 model selected |
| 79767 | | |
| 79768 | | > hide sel atoms |
| 79769 | | |
| 79770 | | > select #25/A:225@C |
| 79771 | | |
| 79772 | | 1 atom, 1 residue, 1 model selected |
| 79773 | | |
| 79774 | | > hide sel atoms |
| 79775 | | |
| 79776 | | > select clear |
| 79777 | | |
| 79778 | | > show #18 models |
| 79779 | | |
| 79780 | | > hide #18 models |
| 79781 | | |
| 79782 | | > rename #25 20240711_copi_golph3_golph3_S55-K298_D223_K224_W225_V226_N227.cif |
| 79783 | | |
| 79784 | | > hide #25 models |
| 79785 | | |
| 79786 | | > show #25 models |
| 79787 | | |
| 79788 | | > hide #25 models |
| 79789 | | |
| 79790 | | > show #26 models |
| 79791 | | |
| 79792 | | > hide #26 models |
| 79793 | | |
| 79794 | | > show #26 models |
| 79795 | | |
| 79796 | | > rename #26 20240711_copi_golph3_golph3_S55-K298_R171A_R174A.cif |
| 79797 | | |
| 79798 | | > select #26/A:171 |
| 79799 | | |
| 79800 | | 11 atoms, 10 bonds, 1 residue, 1 model selected |
| 79801 | | |
| 79802 | | > show sel atoms |
| 79803 | | |
| 79804 | | > select #26/A:174 |
| 79805 | | |
| 79806 | | 11 atoms, 10 bonds, 1 residue, 1 model selected |
| 79807 | | |
| 79808 | | > show sel atoms |
| 79809 | | |
| 79810 | | > select #26/A:174@N |
| 79811 | | |
| 79812 | | 1 atom, 1 residue, 1 model selected |
| 79813 | | |
| 79814 | | > hide sel atoms |
| 79815 | | |
| 79816 | | > select #26/A:174@O |
| 79817 | | |
| 79818 | | 1 atom, 1 residue, 1 model selected |
| 79819 | | |
| 79820 | | > hide sel atoms |
| 79821 | | |
| 79822 | | > select #26/A:174@C |
| 79823 | | |
| 79824 | | 1 atom, 1 residue, 1 model selected |
| 79825 | | |
| 79826 | | > hide sel atoms |
| 79827 | | |
| 79828 | | > select #26/A:171@O |
| 79829 | | |
| 79830 | | 1 atom, 1 residue, 1 model selected |
| 79831 | | |
| 79832 | | > hide sel atoms |
| 79833 | | |
| 79834 | | > select #26/A:171@N |
| 79835 | | |
| 79836 | | 1 atom, 1 residue, 1 model selected |
| 79837 | | |
| 79838 | | > hide sel atoms |
| 79839 | | |
| 79840 | | > select #26/A:171@C |
| 79841 | | |
| 79842 | | 1 atom, 1 residue, 1 model selected |
| 79843 | | |
| 79844 | | > hide sel atoms |
| 79845 | | |
| 79846 | | > select clear |
| 79847 | | |
| 79848 | | > hide #26 models |
| 79849 | | |
| 79850 | | > show #27 models |
| 79851 | | |
| 79852 | | > select #27/A:179 |
| 79853 | | |
| 79854 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 79855 | | |
| 79856 | | > show sel atoms |
| 79857 | | |
| 79858 | | > color sel byhetero |
| 79859 | | |
| 79860 | | > select #27/A:183 |
| 79861 | | |
| 79862 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 79863 | | |
| 79864 | | > color sel byhetero |
| 79865 | | |
| 79866 | | > show sel atoms |
| 79867 | | |
| 79868 | | > select #27/A:183@O |
| 79869 | | |
| 79870 | | 1 atom, 1 residue, 1 model selected |
| 79871 | | |
| 79872 | | > hide sel atoms |
| 79873 | | |
| 79874 | | > select #27/A:183@N |
| 79875 | | |
| 79876 | | 1 atom, 1 residue, 1 model selected |
| 79877 | | |
| 79878 | | > hide sel atoms |
| 79879 | | |
| 79880 | | > select #27/A:183@C |
| 79881 | | |
| 79882 | | 1 atom, 1 residue, 1 model selected |
| 79883 | | |
| 79884 | | > hide sel atoms |
| 79885 | | |
| 79886 | | > select #27/A:179@O |
| 79887 | | |
| 79888 | | 1 atom, 1 residue, 1 model selected |
| 79889 | | |
| 79890 | | > hide sel atoms |
| 79891 | | |
| 79892 | | > select #27/A:179@C |
| 79893 | | |
| 79894 | | 1 atom, 1 residue, 1 model selected |
| 79895 | | |
| 79896 | | > hide sel atoms |
| 79897 | | |
| 79898 | | > select #27/A:179@N |
| 79899 | | |
| 79900 | | 1 atom, 1 residue, 1 model selected |
| 79901 | | |
| 79902 | | > hide sel cartoons |
| 79903 | | |
| 79904 | | > show sel cartoons |
| 79905 | | |
| 79906 | | > undo |
| 79907 | | |
| 79908 | | [Repeated 1 time(s)] |
| 79909 | | |
| 79910 | | > select #27/A:179@N |
| 79911 | | |
| 79912 | | 1 atom, 1 residue, 1 model selected |
| 79913 | | |
| 79914 | | > hide sel atoms |
| 79915 | | |
| 79916 | | > select clear |
| 79917 | | |
| 79918 | | > rename #27 20240711_copi_golph3_golph3_S55-K298_K179E_E183K.cif |
| 79919 | | |
| 79920 | | > hide #27 models |
| 79921 | | |
| 79922 | | > show #28 models |
| 79923 | | |
| 79924 | | > show #18 models |
| 79925 | | |
| 79926 | | > select #28/A:227 |
| 79927 | | |
| 79928 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 79929 | | |
| 79930 | | > show sel atoms |
| 79931 | | |
| 79932 | | > color sel byhetero |
| 79933 | | |
| 79934 | | > select #28/A:227@O |
| 79935 | | |
| 79936 | | 1 atom, 1 residue, 1 model selected |
| 79937 | | |
| 79938 | | > select #28/A:227@O |
| 79939 | | |
| 79940 | | 1 atom, 1 residue, 1 model selected |
| 79941 | | |
| 79942 | | > hide sel atoms |
| 79943 | | |
| 79944 | | > select #28/A:227@C |
| 79945 | | |
| 79946 | | 1 atom, 1 residue, 1 model selected |
| 79947 | | |
| 79948 | | > hide sel atoms |
| 79949 | | |
| 79950 | | > select clear |
| 79951 | | |
| 79952 | | > select #28/A:227@N |
| 79953 | | |
| 79954 | | 1 atom, 1 residue, 1 model selected |
| 79955 | | |
| 79956 | | > hide sel atoms |
| 79957 | | |
| 79958 | | > select clear |
| 79959 | | |
| 79960 | | > select #28/A:231 |
| 79961 | | |
| 79962 | | 11 atoms, 10 bonds, 1 residue, 1 model selected |
| 79963 | | |
| 79964 | | > show sel atoms |
| 79965 | | |
| 79966 | | > hide #18 models |
| 79967 | | |
| 79968 | | > color sel byhetero |
| 79969 | | |
| 79970 | | > select #28/A:231@N |
| 79971 | | |
| 79972 | | 1 atom, 1 residue, 1 model selected |
| 79973 | | |
| 79974 | | > hide sel atoms |
| 79975 | | |
| 79976 | | > select #28/A:231@O |
| 79977 | | |
| 79978 | | 1 atom, 1 residue, 1 model selected |
| 79979 | | |
| 79980 | | > hide sel atoms |
| 79981 | | |
| 79982 | | > select #28/A:231@C |
| 79983 | | |
| 79984 | | 1 atom, 1 residue, 1 model selected |
| 79985 | | |
| 79986 | | > hide sel atoms |
| 79987 | | |
| 79988 | | > select add #28 |
| 79989 | | |
| 79990 | | 1971 atoms, 2002 bonds, 244 residues, 1 model selected |
| 79991 | | |
| 79992 | | > select subtract #28 |
| 79993 | | |
| 79994 | | Nothing selected |
| 79995 | | |
| 79996 | | > rename #28 20240711_copi_golph3_golph3_S55-K298_N227A_R231A.cif |
| 79997 | | |
| 79998 | | > hide #28 models |
| 79999 | | |
| 80000 | | > close #29 |
| 80001 | | |
| 80002 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 80003 | | > paper/Chimera sessions/20241210_chimera_for_figures.cxs" |
| 80004 | | |
| 80005 | | > show #18 models |
| 80006 | | |
| 80007 | | > hide #18 models |
| 80008 | | |
| 80009 | | > combine #50 |
| 80010 | | |
| 80011 | | > cartoon style width 2.5 thickness 0.6 xsection oval modeHelix wrap sides 16 |
| 80012 | | > arrowScale 2.25 |
| 80013 | | |
| 80014 | | > show #28 models |
| 80015 | | |
| 80016 | | > select #29/I:21 |
| 80017 | | |
| 80018 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 80019 | | |
| 80020 | | > show sel atoms |
| 80021 | | |
| 80022 | | > color sel byhetero |
| 80023 | | |
| 80024 | | > select #29/I:21@N |
| 80025 | | |
| 80026 | | 1 atom, 1 residue, 1 model selected |
| 80027 | | |
| 80028 | | > hide sel atoms |
| 80029 | | |
| 80030 | | > select #29/I:21@C |
| 80031 | | |
| 80032 | | 1 atom, 1 residue, 1 model selected |
| 80033 | | |
| 80034 | | > hide sel atoms |
| 80035 | | |
| 80036 | | > select #29/I:21@O |
| 80037 | | |
| 80038 | | 1 atom, 1 residue, 1 model selected |
| 80039 | | |
| 80040 | | > hide sel atoms |
| 80041 | | |
| 80042 | | > select #29/I:22 |
| 80043 | | |
| 80044 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 80045 | | |
| 80046 | | > show sel atoms |
| 80047 | | |
| 80048 | | > color sel byhetero |
| 80049 | | |
| 80050 | | > select #29/I:22@N |
| 80051 | | |
| 80052 | | 1 atom, 1 residue, 1 model selected |
| 80053 | | |
| 80054 | | > hide sel atoms |
| 80055 | | |
| 80056 | | > select #29/I:22@O |
| 80057 | | |
| 80058 | | 1 atom, 1 residue, 1 model selected |
| 80059 | | |
| 80060 | | > hide sel atoms |
| 80061 | | |
| 80062 | | > select #29/I:22@C |
| 80063 | | |
| 80064 | | 1 atom, 1 residue, 1 model selected |
| 80065 | | |
| 80066 | | > hide sel atoms |
| 80067 | | |
| 80068 | | > select clear |
| 80069 | | |
| 80070 | | > rename #29 20240711_copi_golph3_zeta1.cif |
| 80071 | | |
| 80072 | | > rename #29 20240711_copi_golph3_zeta1_.cif |
| 80073 | | |
| 80074 | | > rename #29 20240711_copi_golph3_zeta1_N21_D22.cif |
| 80075 | | |
| 80076 | | > hide #29 models |
| 80077 | | |
| 80078 | | > hide #28 models |
| 80079 | | |
| 80080 | | > show #28 models |
| 80081 | | |
| 80082 | | > show #29 models |
| 80083 | | |
| 80084 | | > hide #29 models |
| 80085 | | |
| 80086 | | > hide #28 models |
| 80087 | | |
| 80088 | | > show #!1 models |
| 80089 | | |
| 80090 | | > show #15 models |
| 80091 | | |
| 80092 | | > hide #!1 models |
| 80093 | | |
| 80094 | | > hide #15 models |
| 80095 | | |
| 80096 | | > show #!54 models |
| 80097 | | |
| 80098 | | > show #!1 models |
| 80099 | | |
| 80100 | | > volume #1 level 0.004413 |
| 80101 | | |
| 80102 | | > volume #1 level 0.008512 |
| 80103 | | |
| 80104 | | > show #!43 models |
| 80105 | | |
| 80106 | | > hide #!54 models |
| 80107 | | |
| 80108 | | > show #34.1 models |
| 80109 | | |
| 80110 | | > show #34.5 models |
| 80111 | | |
| 80112 | | > show #!54 models |
| 80113 | | |
| 80114 | | > hide #!54 models |
| 80115 | | |
| 80116 | | > show #!54 models |
| 80117 | | |
| 80118 | | > hide #!1 models |
| 80119 | | |
| 80120 | | > hide #34.5 models |
| 80121 | | |
| 80122 | | > show #34.5 models |
| 80123 | | |
| 80124 | | > hide #34.5 models |
| 80125 | | |
| 80126 | | > hide #!54 models |
| 80127 | | |
| 80128 | | > hide #!43 models |
| 80129 | | |
| 80130 | | > show #!54 models |
| 80131 | | |
| 80132 | | > hide #!54 models |
| 80133 | | |
| 80134 | | > show #!54 models |
| 80135 | | |
| 80136 | | > show #55 models |
| 80137 | | |
| 80138 | | > hide #!54 models |
| 80139 | | |
| 80140 | | > hide #55 models |
| 80141 | | |
| 80142 | | > color #54 label_purple_v3 |
| 80143 | | |
| 80144 | | > color #55 label_purple_v3 |
| 80145 | | |
| 80146 | | > show #55 models |
| 80147 | | |
| 80148 | | > show #!54 models |
| 80149 | | |
| 80150 | | > hide #55 models |
| 80151 | | |
| 80152 | | > hide #!54 models |
| 80153 | | |
| 80154 | | > color #55 #34.1 label_purple_v3 |
| 80155 | | |
| 80156 | | > hide #34.1 models |
| 80157 | | |
| 80158 | | > show #34.1 models |
| 80159 | | |
| 80160 | | > show #!54 models |
| 80161 | | |
| 80162 | | > hide #!54 models |
| 80163 | | |
| 80164 | | > show #!54 models |
| 80165 | | |
| 80166 | | > hide #!54 models |
| 80167 | | |
| 80168 | | > show #!54 models |
| 80169 | | |
| 80170 | | > hide #54.1 models |
| 80171 | | |
| 80172 | | > show #55 models |
| 80173 | | |
| 80174 | | > hide #55 models |
| 80175 | | |
| 80176 | | > select subtract #54.1 |
| 80177 | | |
| 80178 | | Nothing selected |
| 80179 | | |
| 80180 | | > hide #!54 models |
| 80181 | | |
| 80182 | | > show #!54 models |
| 80183 | | |
| 80184 | | > hide #34.1 models |
| 80185 | | |
| 80186 | | > show #34.1 models |
| 80187 | | |
| 80188 | | > hide #34.1 models |
| 80189 | | |
| 80190 | | > hide #!54 models |
| 80191 | | |
| 80192 | | > show #55 models |
| 80193 | | |
| 80194 | | > hide #55 models |
| 80195 | | |
| 80196 | | > show #!54 models |
| 80197 | | |
| 80198 | | > show #55 models |
| 80199 | | |
| 80200 | | > hide #55 models |
| 80201 | | |
| 80202 | | > show #34.1 models |
| 80203 | | |
| 80204 | | > hide #34.1 models |
| 80205 | | |
| 80206 | | > show #!1 models |
| 80207 | | |
| 80208 | | > select #54/A:1 |
| 80209 | | |
| 80210 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 80211 | | |
| 80212 | | > hide sel atoms |
| 80213 | | |
| 80214 | | > hide sel cartoons |
| 80215 | | |
| 80216 | | > select #54/A:2 |
| 80217 | | |
| 80218 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 80219 | | |
| 80220 | | > hide sel cartoons |
| 80221 | | |
| 80222 | | > select #54/A:3 |
| 80223 | | |
| 80224 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 80225 | | |
| 80226 | | > hide sel cartoons |
| 80227 | | |
| 80228 | | > select #54/A:4 |
| 80229 | | |
| 80230 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 80231 | | |
| 80232 | | > hide sel cartoons |
| 80233 | | |
| 80234 | | > select #54/A:5 |
| 80235 | | |
| 80236 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 80237 | | |
| 80238 | | > hide sel cartoons |
| 80239 | | |
| 80240 | | > select #54/A:6 |
| 80241 | | |
| 80242 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 80243 | | |
| 80244 | | > hide sel cartoons |
| 80245 | | |
| 80246 | | > select #54/A:7 |
| 80247 | | |
| 80248 | | 11 atoms, 10 bonds, 1 residue, 1 model selected |
| 80249 | | |
| 80250 | | > hide sel cartoons |
| 80251 | | |
| 80252 | | > select #54/A:8 |
| 80253 | | |
| 80254 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 80255 | | |
| 80256 | | > hide sel cartoons |
| 80257 | | |
| 80258 | | > select #54/A:9 |
| 80259 | | |
| 80260 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 80261 | | |
| 80262 | | > hide sel cartoons |
| 80263 | | |
| 80264 | | > select #1 |
| 80265 | | |
| 80266 | | 2 models selected |
| 80267 | | |
| 80268 | | > select #54/A:31 |
| 80269 | | |
| 80270 | | 4 atoms, 3 bonds, 1 residue, 1 model selected |
| 80271 | | |
| 80272 | | > hide sel atoms |
| 80273 | | |
| 80274 | | > hide sel cartoons |
| 80275 | | |
| 80276 | | > select #54/A:30 |
| 80277 | | |
| 80278 | | 4 atoms, 3 bonds, 1 residue, 1 model selected |
| 80279 | | |
| 80280 | | > hide sel cartoons |
| 80281 | | |
| 80282 | | > select #54/A:29 |
| 80283 | | |
| 80284 | | 5 atoms, 4 bonds, 1 residue, 1 model selected |
| 80285 | | |
| 80286 | | > hide sel cartoons |
| 80287 | | |
| 80288 | | > select #54/A:28 |
| 80289 | | |
| 80290 | | 5 atoms, 4 bonds, 1 residue, 1 model selected |
| 80291 | | |
| 80292 | | > hide sel cartoons |
| 80293 | | |
| 80294 | | > select #54/A:27 |
| 80295 | | |
| 80296 | | 11 atoms, 10 bonds, 1 residue, 1 model selected |
| 80297 | | |
| 80298 | | > hide sel cartoons |
| 80299 | | |
| 80300 | | > select #54/A:26 |
| 80301 | | |
| 80302 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 80303 | | |
| 80304 | | > hide sel cartoons |
| 80305 | | |
| 80306 | | > select #54/A:25 |
| 80307 | | |
| 80308 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 80309 | | |
| 80310 | | > hide sel cartoons |
| 80311 | | |
| 80312 | | > select #54/A:24 |
| 80313 | | |
| 80314 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 80315 | | |
| 80316 | | > hide sel atoms |
| 80317 | | |
| 80318 | | > hide sel cartoons |
| 80319 | | |
| 80320 | | > show #34.5 models |
| 80321 | | |
| 80322 | | > hide #34.5 models |
| 80323 | | |
| 80324 | | > show #!44 models |
| 80325 | | |
| 80326 | | > hide #!44 models |
| 80327 | | |
| 80328 | | > show #!43 models |
| 80329 | | |
| 80330 | | > hide #!43 models |
| 80331 | | |
| 80332 | | > select add #54 |
| 80333 | | |
| 80334 | | 229 atoms, 228 bonds, 31 residues, 1 model selected |
| 80335 | | |
| 80336 | | > select subtract #54 |
| 80337 | | |
| 80338 | | Nothing selected |
| 80339 | | |
| 80340 | | > show #!61 models |
| 80341 | | |
| 80342 | | > hide #!54 models |
| 80343 | | |
| 80344 | | > hide #!1 models |
| 80345 | | |
| 80346 | | > select #61/A:1 |
| 80347 | | |
| 80348 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 80349 | | |
| 80350 | | > hide sel cartoons |
| 80351 | | |
| 80352 | | [Repeated 1 time(s)] |
| 80353 | | |
| 80354 | | > select #61/A:2 |
| 80355 | | |
| 80356 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 80357 | | |
| 80358 | | > hide sel cartoons |
| 80359 | | |
| 80360 | | > select #61/A:3 |
| 80361 | | |
| 80362 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 80363 | | |
| 80364 | | > hide sel cartoons |
| 80365 | | |
| 80366 | | > select #61/A:4 |
| 80367 | | |
| 80368 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 80369 | | |
| 80370 | | > hide sel cartoons |
| 80371 | | |
| 80372 | | > select #61/A:5 |
| 80373 | | |
| 80374 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 80375 | | |
| 80376 | | > hide sel cartoons |
| 80377 | | |
| 80378 | | > select #61/A:6 |
| 80379 | | |
| 80380 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 80381 | | |
| 80382 | | > hide sel cartoons |
| 80383 | | |
| 80384 | | > select #61/A:7 |
| 80385 | | |
| 80386 | | 11 atoms, 10 bonds, 1 residue, 1 model selected |
| 80387 | | |
| 80388 | | > hide sel cartoons |
| 80389 | | |
| 80390 | | > show #!54 models |
| 80391 | | |
| 80392 | | > hide #!61 models |
| 80393 | | |
| 80394 | | > show #!61 models |
| 80395 | | |
| 80396 | | > select #61/A:8 |
| 80397 | | |
| 80398 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 80399 | | |
| 80400 | | > hide sel cartoons |
| 80401 | | |
| 80402 | | > hide #!61 models |
| 80403 | | |
| 80404 | | > show #!61 models |
| 80405 | | |
| 80406 | | > select #61/A:9 |
| 80407 | | |
| 80408 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 80409 | | |
| 80410 | | > hide sel cartoons |
| 80411 | | |
| 80412 | | > hide #!61 models |
| 80413 | | |
| 80414 | | > show #!61 models |
| 80415 | | |
| 80416 | | > hide #!61 models |
| 80417 | | |
| 80418 | | > show #!61 models |
| 80419 | | |
| 80420 | | > select #61/A:31 |
| 80421 | | |
| 80422 | | 4 atoms, 3 bonds, 1 residue, 1 model selected |
| 80423 | | |
| 80424 | | > hide sel atoms |
| 80425 | | |
| 80426 | | > hide sel cartoons |
| 80427 | | |
| 80428 | | > select #61/A:30 |
| 80429 | | |
| 80430 | | 4 atoms, 3 bonds, 1 residue, 1 model selected |
| 80431 | | |
| 80432 | | > hide sel cartoons |
| 80433 | | |
| 80434 | | > select #61/A:29 |
| 80435 | | |
| 80436 | | 5 atoms, 4 bonds, 1 residue, 1 model selected |
| 80437 | | |
| 80438 | | > hide sel cartoons |
| 80439 | | |
| 80440 | | > select #61/A:28 |
| 80441 | | |
| 80442 | | 5 atoms, 4 bonds, 1 residue, 1 model selected |
| 80443 | | |
| 80444 | | > hide sel cartoons |
| 80445 | | |
| 80446 | | > select #61/A:27 |
| 80447 | | |
| 80448 | | 11 atoms, 10 bonds, 1 residue, 1 model selected |
| 80449 | | |
| 80450 | | > hide sel cartoons |
| 80451 | | |
| 80452 | | > select #61/A:26 |
| 80453 | | |
| 80454 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 80455 | | |
| 80456 | | > hide sel cartoons |
| 80457 | | |
| 80458 | | > select #61/A:25 |
| 80459 | | |
| 80460 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 80461 | | |
| 80462 | | > hide sel cartoons |
| 80463 | | |
| 80464 | | > select #61/A:24 |
| 80465 | | |
| 80466 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 80467 | | |
| 80468 | | > hide sel cartoons |
| 80469 | | |
| 80470 | | > select #61/A:23 |
| 80471 | | |
| 80472 | | 5 atoms, 4 bonds, 1 residue, 1 model selected |
| 80473 | | |
| 80474 | | > hide sel cartoons |
| 80475 | | |
| 80476 | | > hide #!61 models |
| 80477 | | |
| 80478 | | > show #!61 models |
| 80479 | | |
| 80480 | | > hide #!61 models |
| 80481 | | |
| 80482 | | > show #!61 models |
| 80483 | | |
| 80484 | | > hide #!61 models |
| 80485 | | |
| 80486 | | > show #!61 models |
| 80487 | | |
| 80488 | | > show #!1 models |
| 80489 | | |
| 80490 | | > hide #!1 models |
| 80491 | | |
| 80492 | | > hide #!61 models |
| 80493 | | |
| 80494 | | > select add #61 |
| 80495 | | |
| 80496 | | 34068 atoms, 34686 bonds, 4 pseudobonds, 4274 residues, 2 models selected |
| 80497 | | |
| 80498 | | > select subtract #61 |
| 80499 | | |
| 80500 | | Nothing selected |
| 80501 | | |
| 80502 | | > show #!61 models |
| 80503 | | |
| 80504 | | > hide #!61 models |
| 80505 | | |
| 80506 | | > show #!61 models |
| 80507 | | |
| 80508 | | > hide #!61 models |
| 80509 | | |
| 80510 | | > hide #!54 models |
| 80511 | | |
| 80512 | | > show #55 models |
| 80513 | | |
| 80514 | | > show #!61 models |
| 80515 | | |
| 80516 | | > hide #!61 models |
| 80517 | | |
| 80518 | | > show #!61 models |
| 80519 | | |
| 80520 | | > hide #!61 models |
| 80521 | | |
| 80522 | | > show #!61 models |
| 80523 | | |
| 80524 | | > hide #55 models |
| 80525 | | |
| 80526 | | > show #55 models |
| 80527 | | |
| 80528 | | > hide #55 models |
| 80529 | | |
| 80530 | | > show #55 models |
| 80531 | | |
| 80532 | | > hide #55 models |
| 80533 | | |
| 80534 | | > show #55 models |
| 80535 | | |
| 80536 | | > hide #55 models |
| 80537 | | |
| 80538 | | > show #55 models |
| 80539 | | |
| 80540 | | > hide #55 models |
| 80541 | | |
| 80542 | | > show #55 models |
| 80543 | | |
| 80544 | | > hide #55 models |
| 80545 | | |
| 80546 | | > show #55 models |
| 80547 | | |
| 80548 | | > hide #55 models |
| 80549 | | |
| 80550 | | > show #55 models |
| 80551 | | |
| 80552 | | > hide #55 models |
| 80553 | | |
| 80554 | | > show #55 models |
| 80555 | | |
| 80556 | | > select add #61 |
| 80557 | | |
| 80558 | | 34068 atoms, 34686 bonds, 4 pseudobonds, 4274 residues, 2 models selected |
| 80559 | | |
| 80560 | | > select add #55 |
| 80561 | | |
| 80562 | | 36039 atoms, 36688 bonds, 4 pseudobonds, 4518 residues, 3 models selected |
| 80563 | | |
| 80564 | | > cartoon style width 2.5 thickness 0.6 xsection oval modeHelix wrap sides 16 |
| 80565 | | > arrowScale 2.25 |
| 80566 | | |
| 80567 | | > select subtract #61 |
| 80568 | | |
| 80569 | | 1971 atoms, 2002 bonds, 244 residues, 1 model selected |
| 80570 | | |
| 80571 | | > select subtract #55 |
| 80572 | | |
| 80573 | | Nothing selected |
| 80574 | | |
| 80575 | | > hide #55 models |
| 80576 | | |
| 80577 | | > show #55 models |
| 80578 | | |
| 80579 | | > hide #55 models |
| 80580 | | |
| 80581 | | > show #55 models |
| 80582 | | |
| 80583 | | > hide #55 models |
| 80584 | | |
| 80585 | | > show #55 models |
| 80586 | | |
| 80587 | | > hide #55 models |
| 80588 | | |
| 80589 | | > show #55 models |
| 80590 | | |
| 80591 | | > hide #55 models |
| 80592 | | |
| 80593 | | > show #55 models |
| 80594 | | |
| 80595 | | > hide #55 models |
| 80596 | | |
| 80597 | | > show #55 models |
| 80598 | | |
| 80599 | | > hide #55 models |
| 80600 | | |
| 80601 | | > show #55 models |
| 80602 | | |
| 80603 | | > hide #55 models |
| 80604 | | |
| 80605 | | > show #55 models |
| 80606 | | |
| 80607 | | > hide #55 models |
| 80608 | | |
| 80609 | | > show #55 models |
| 80610 | | |
| 80611 | | > fitmap #55 inMap #5 |
| 80612 | | |
| 80613 | | Fit molecule 20240711_copi_golph3_golph3_.cif (#55) to map |
| 80614 | | relion_locres_filtered_job073.mrc (#5) using 1971 atoms |
| 80615 | | average map value = 0.008014, steps = 44 |
| 80616 | | shifted from previous position = 0.238 |
| 80617 | | rotated from previous position = 0.502 degrees |
| 80618 | | atoms outside contour = 615, contour level = 0.0055 |
| 80619 | | |
| 80620 | | Position of 20240711_copi_golph3_golph3_.cif (#55) relative to |
| 80621 | | relion_locres_filtered_job073.mrc (#5) coordinates: |
| 80622 | | Matrix rotation and translation |
| 80623 | | 0.52386575 0.46318892 0.71485712 230.48049834 |
| 80624 | | 0.00576618 -0.84113949 0.54078749 257.66121391 |
| 80625 | | 0.85178133 -0.27917805 -0.44331500 262.65982718 |
| 80626 | | Axis -0.86416246 -0.14430455 -0.48207826 |
| 80627 | | Axis point 0.00000000 122.38667699 37.07360875 |
| 80628 | | Rotation angle (degrees) 151.67789323 |
| 80629 | | Shift along axis -362.97687086 |
| 80630 | | |
| 80631 | | |
| 80632 | | > fitmap #55 inMap #1 |
| 80633 | | |
| 80634 | | Fit molecule 20240711_copi_golph3_golph3_.cif (#55) to map |
| 80635 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1971 atoms |
| 80636 | | average map value = 0.008363, steps = 44 |
| 80637 | | shifted from previous position = 0.0132 |
| 80638 | | rotated from previous position = 0.0437 degrees |
| 80639 | | atoms outside contour = 1085, contour level = 0.0085125 |
| 80640 | | |
| 80641 | | Position of 20240711_copi_golph3_golph3_.cif (#55) relative to |
| 80642 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 80643 | | Matrix rotation and translation |
| 80644 | | 0.52152989 0.47046838 0.71180480 230.53224432 |
| 80645 | | 0.01109824 -0.83791424 0.54568906 257.43701719 |
| 80646 | | 0.85316083 -0.27669337 -0.44221869 262.84625141 |
| 80647 | | Axis -0.86336552 -0.14840045 -0.48226267 |
| 80648 | | Axis point 0.00000000 121.71912974 37.18200810 |
| 80649 | | Rotation angle (degrees) 151.55822107 |
| 80650 | | Shift along axis -363.99829455 |
| 80651 | | |
| 80652 | | |
| 80653 | | > fitmap #55 inMap #1 |
| 80654 | | |
| 80655 | | Fit molecule 20240711_copi_golph3_golph3_.cif (#55) to map |
| 80656 | | relion_locres_filtered_20240326_GT.mrc (#1) using 1971 atoms |
| 80657 | | average map value = 0.008363, steps = 44 |
| 80658 | | shifted from previous position = 0.0132 |
| 80659 | | rotated from previous position = 0.0437 degrees |
| 80660 | | atoms outside contour = 1085, contour level = 0.0085125 |
| 80661 | | |
| 80662 | | Position of 20240711_copi_golph3_golph3_.cif (#55) relative to |
| 80663 | | relion_locres_filtered_20240326_GT.mrc (#1) coordinates: |
| 80664 | | Matrix rotation and translation |
| 80665 | | 0.52152989 0.47046838 0.71180480 230.53224432 |
| 80666 | | 0.01109824 -0.83791424 0.54568906 257.43701719 |
| 80667 | | 0.85316083 -0.27669337 -0.44221869 262.84625141 |
| 80668 | | Axis -0.86336552 -0.14840045 -0.48226267 |
| 80669 | | Axis point 0.00000000 121.71912974 37.18200810 |
| 80670 | | Rotation angle (degrees) 151.55822107 |
| 80671 | | Shift along axis -363.99829455 |
| 80672 | | |
| 80673 | | |
| 80674 | | > fitmap #61 inMap #5 |
| 80675 | | |
| 80676 | | Fit molecule combine_model_COPI_GOLPH3_colorset2 (#61) to map |
| 80677 | | relion_locres_filtered_job073.mrc (#5) using 34068 atoms |
| 80678 | | average map value = 0.00881, steps = 40 |
| 80679 | | shifted from previous position = 0.0714 |
| 80680 | | rotated from previous position = 0.061 degrees |
| 80681 | | atoms outside contour = 11123, contour level = 0.0055 |
| 80682 | | |
| 80683 | | Position of combine_model_COPI_GOLPH3_colorset2 (#61) relative to |
| 80684 | | relion_locres_filtered_job073.mrc (#5) coordinates: |
| 80685 | | Matrix rotation and translation |
| 80686 | | 0.58042026 0.37622353 0.72219677 229.24311801 |
| 80687 | | -0.03997199 -0.87264197 0.48672192 258.37100747 |
| 80688 | | 0.81333546 -0.31137090 -0.49146067 263.88649055 |
| 80689 | | Axis -0.88216563 -0.10073943 -0.46003845 |
| 80690 | | Axis point 0.00000000 130.05916014 41.92831171 |
| 80691 | | Rotation angle (degrees) 153.10553032 |
| 80692 | | Shift along axis -349.65647828 |
| 80693 | | |
| 80694 | | |
| 80695 | | > fitmap #55 inMap #5 |
| 80696 | | |
| 80697 | | Fit molecule 20240711_copi_golph3_golph3_.cif (#55) to map |
| 80698 | | relion_locres_filtered_job073.mrc (#5) using 1971 atoms |
| 80699 | | average map value = 0.008014, steps = 44 |
| 80700 | | shifted from previous position = 0.238 |
| 80701 | | rotated from previous position = 0.502 degrees |
| 80702 | | atoms outside contour = 615, contour level = 0.0055 |
| 80703 | | |
| 80704 | | Position of 20240711_copi_golph3_golph3_.cif (#55) relative to |
| 80705 | | relion_locres_filtered_job073.mrc (#5) coordinates: |
| 80706 | | Matrix rotation and translation |
| 80707 | | 0.52386575 0.46318892 0.71485712 230.48049834 |
| 80708 | | 0.00576618 -0.84113949 0.54078749 257.66121391 |
| 80709 | | 0.85178133 -0.27917805 -0.44331500 262.65982718 |
| 80710 | | Axis -0.86416246 -0.14430455 -0.48207826 |
| 80711 | | Axis point -0.00000000 122.38667699 37.07360875 |
| 80712 | | Rotation angle (degrees) 151.67789323 |
| 80713 | | Shift along axis -362.97687086 |
| 80714 | | |
| 80715 | | |
| 80716 | | > fitmap #55 inMap #5 |
| 80717 | | |
| 80718 | | Fit molecule 20240711_copi_golph3_golph3_.cif (#55) to map |
| 80719 | | relion_locres_filtered_job073.mrc (#5) using 1971 atoms |
| 80720 | | average map value = 0.008014, steps = 40 |
| 80721 | | shifted from previous position = 0.0318 |
| 80722 | | rotated from previous position = 0.0466 degrees |
| 80723 | | atoms outside contour = 615, contour level = 0.0055 |
| 80724 | | |
| 80725 | | Position of 20240711_copi_golph3_golph3_.cif (#55) relative to |
| 80726 | | relion_locres_filtered_job073.mrc (#5) coordinates: |
| 80727 | | Matrix rotation and translation |
| 80728 | | 0.52424128 0.46363497 0.71429245 230.53586033 |
| 80729 | | 0.00606998 -0.84080815 0.54129919 257.64549928 |
| 80730 | | 0.85154814 -0.27943564 -0.44360059 262.67721165 |
| 80731 | | Axis -0.86426160 -0.14453490 -0.48183145 |
| 80732 | | Axis point 0.00000000 122.36679546 37.09857725 |
| 80733 | | Rotation angle (degrees) 151.65246522 |
| 80734 | | Shift along axis -363.04819997 |
| 80735 | | |
| 80736 | | |
| 80737 | | > hide #55 models |
| 80738 | | |
| 80739 | | > show #28 models |
| 80740 | | |
| 80741 | | > hide #28 models |
| 80742 | | |
| 80743 | | > show #28 models |
| 80744 | | |
| 80745 | | > hide #28 models |
| 80746 | | |
| 80747 | | > show #28 models |
| 80748 | | |
| 80749 | | > hide #28 models |
| 80750 | | |
| 80751 | | > show #28 models |
| 80752 | | |
| 80753 | | > hide #28 models |
| 80754 | | |
| 80755 | | > show #28 models |
| 80756 | | |
| 80757 | | > hide #28 models |
| 80758 | | |
| 80759 | | > show #28 models |
| 80760 | | |
| 80761 | | > show #27 models |
| 80762 | | |
| 80763 | | > show #26 models |
| 80764 | | |
| 80765 | | > show #25 models |
| 80766 | | |
| 80767 | | > show #24 models |
| 80768 | | |
| 80769 | | > show #23 models |
| 80770 | | |
| 80771 | | > hide #23 models |
| 80772 | | |
| 80773 | | > hide #25 models |
| 80774 | | |
| 80775 | | > hide #24 models |
| 80776 | | |
| 80777 | | > hide #26 models |
| 80778 | | |
| 80779 | | > hide #27 models |
| 80780 | | |
| 80781 | | > hide #28 models |
| 80782 | | |
| 80783 | | > hide #!61 models |
| 80784 | | |
| 80785 | | > show #55 models |
| 80786 | | |
| 80787 | | > show #28 models |
| 80788 | | |
| 80789 | | > hide #28 models |
| 80790 | | |
| 80791 | | > show #28 models |
| 80792 | | |
| 80793 | | > hide #28 models |
| 80794 | | |
| 80795 | | > show #28 models |
| 80796 | | |
| 80797 | | > hide #28 models |
| 80798 | | |
| 80799 | | > show #28 models |
| 80800 | | |
| 80801 | | > hide #28 models |
| 80802 | | |
| 80803 | | > hide #55 models |
| 80804 | | |
| 80805 | | > show #55 models |
| 80806 | | |
| 80807 | | > select add #55 |
| 80808 | | |
| 80809 | | 1971 atoms, 2002 bonds, 244 residues, 1 model selected |
| 80810 | | |
| 80811 | | > cartoon style width 2.5 thickness 0.6 xsection oval modeHelix wrap sides 16 |
| 80812 | | > arrowScale 2.25 |
| 80813 | | |
| 80814 | | [Repeated 1 time(s)] |
| 80815 | | |
| 80816 | | > show sel cartoons |
| 80817 | | |
| 80818 | | > hide sel cartoons |
| 80819 | | |
| 80820 | | > show sel cartoons |
| 80821 | | |
| 80822 | | > select subtract #55 |
| 80823 | | |
| 80824 | | Nothing selected |
| 80825 | | |
| 80826 | | > show #!54 models |
| 80827 | | |
| 80828 | | > select add #55 |
| 80829 | | |
| 80830 | | 1971 atoms, 2002 bonds, 244 residues, 1 model selected |
| 80831 | | |
| 80832 | | > show #28 models |
| 80833 | | |
| 80834 | | > select subtract #55 |
| 80835 | | |
| 80836 | | Nothing selected |
| 80837 | | |
| 80838 | | > select add #54 |
| 80839 | | |
| 80840 | | 229 atoms, 228 bonds, 31 residues, 1 model selected |
| 80841 | | |
| 80842 | | > select add #55 |
| 80843 | | |
| 80844 | | 2200 atoms, 2230 bonds, 275 residues, 2 models selected |
| 80845 | | |
| 80846 | | > cartoon style width 2.5 thickness 0.6 xsection oval modeHelix wrap sides 16 |
| 80847 | | > arrows true arrowScale 2.25 |
| 80848 | | |
| 80849 | | > cartoon style width 2.5 thickness 0.6 xsection oval modeHelix wrap sides 16 |
| 80850 | | > arrows false arrowScale 2.25 |
| 80851 | | |
| 80852 | | > select add #15 |
| 80853 | | |
| 80854 | | 6963 atoms, 7110 bonds, 866 residues, 3 models selected |
| 80855 | | |
| 80856 | | > select add #16 |
| 80857 | | |
| 80858 | | 11726 atoms, 11990 bonds, 1457 residues, 4 models selected |
| 80859 | | |
| 80860 | | > select add #17 |
| 80861 | | |
| 80862 | | 16489 atoms, 16870 bonds, 2048 residues, 5 models selected |
| 80863 | | |
| 80864 | | > show #15 models |
| 80865 | | |
| 80866 | | > show #16 models |
| 80867 | | |
| 80868 | | > show #17 models |
| 80869 | | |
| 80870 | | > show #18 models |
| 80871 | | |
| 80872 | | > select add #18 |
| 80873 | | |
| 80874 | | 17689 atoms, 18088 bonds, 2198 residues, 6 models selected |
| 80875 | | |
| 80876 | | > show #19 models |
| 80877 | | |
| 80878 | | > select add #19 |
| 80879 | | |
| 80880 | | 18852 atoms, 19265 bonds, 2347 residues, 7 models selected |
| 80881 | | |
| 80882 | | > show #20 models |
| 80883 | | |
| 80884 | | > select add #20 |
| 80885 | | |
| 80886 | | 20823 atoms, 21267 bonds, 2591 residues, 8 models selected |
| 80887 | | |
| 80888 | | > show #21 models |
| 80889 | | |
| 80890 | | > select add #21 |
| 80891 | | |
| 80892 | | 22794 atoms, 23269 bonds, 2835 residues, 9 models selected |
| 80893 | | |
| 80894 | | > show #22 models |
| 80895 | | |
| 80896 | | > select add #22 |
| 80897 | | |
| 80898 | | 24765 atoms, 25271 bonds, 3079 residues, 10 models selected |
| 80899 | | |
| 80900 | | > show #23 models |
| 80901 | | |
| 80902 | | > select add #23 |
| 80903 | | |
| 80904 | | 26736 atoms, 27273 bonds, 3323 residues, 11 models selected |
| 80905 | | |
| 80906 | | > show #24 models |
| 80907 | | |
| 80908 | | > select add #24 |
| 80909 | | |
| 80910 | | 28707 atoms, 29275 bonds, 3567 residues, 12 models selected |
| 80911 | | |
| 80912 | | > select add #25 |
| 80913 | | |
| 80914 | | 30678 atoms, 31277 bonds, 3811 residues, 13 models selected |
| 80915 | | |
| 80916 | | > show #25 models |
| 80917 | | |
| 80918 | | > show #26 models |
| 80919 | | |
| 80920 | | > select add #26 |
| 80921 | | |
| 80922 | | 32649 atoms, 33279 bonds, 4055 residues, 14 models selected |
| 80923 | | |
| 80924 | | > show #27 models |
| 80925 | | |
| 80926 | | > select add #27 |
| 80927 | | |
| 80928 | | 34620 atoms, 35281 bonds, 4299 residues, 15 models selected |
| 80929 | | |
| 80930 | | > select add #28 |
| 80931 | | |
| 80932 | | 36591 atoms, 37283 bonds, 4543 residues, 16 models selected |
| 80933 | | |
| 80934 | | > show #29 models |
| 80935 | | |
| 80936 | | > select add #29 |
| 80937 | | |
| 80938 | | 37791 atoms, 38501 bonds, 4693 residues, 17 models selected |
| 80939 | | |
| 80940 | | > select add #34 |
| 80941 | | |
| 80942 | | 73259 atoms, 74618 bonds, 9170 residues, 27 models selected |
| 80943 | | |
| 80944 | | > select add #38 |
| 80945 | | |
| 80946 | | 78022 atoms, 79498 bonds, 9761 residues, 28 models selected |
| 80947 | | |
| 80948 | | > select add #39 |
| 80949 | | |
| 80950 | | 79878 atoms, 81389 bonds, 9994 residues, 29 models selected |
| 80951 | | |
| 80952 | | > select add #40 |
| 80953 | | |
| 80954 | | 118644 atoms, 120885 bonds, 3 pseudobonds, 14898 residues, 31 models selected |
| 80955 | | |
| 80956 | | > select add #41 |
| 80957 | | |
| 80958 | | 123330 atoms, 125683 bonds, 3 pseudobonds, 15484 residues, 34 models selected |
| 80959 | | |
| 80960 | | > select add #42 |
| 80961 | | |
| 80962 | | 125339 atoms, 127731 bonds, 3 pseudobonds, 15736 residues, 35 models selected |
| 80963 | | |
| 80964 | | > select add #43 |
| 80965 | | |
| 80966 | | 127211 atoms, 129635 bonds, 3 pseudobonds, 15979 residues, 36 models selected |
| 80967 | | |
| 80968 | | > select add #44 |
| 80969 | | |
| 80970 | | 129699 atoms, 132153 bonds, 4 pseudobonds, 16292 residues, 38 models selected |
| 80971 | | |
| 80972 | | > select add #45 |
| 80973 | | |
| 80974 | | 132578 atoms, 135081 bonds, 5 pseudobonds, 16654 residues, 40 models selected |
| 80975 | | |
| 80976 | | > select add #46 |
| 80977 | | |
| 80978 | | 134259 atoms, 136781 bonds, 6 pseudobonds, 16863 residues, 42 models selected |
| 80979 | | |
| 80980 | | > select add #47 |
| 80981 | | |
| 80982 | | 135422 atoms, 137958 bonds, 6 pseudobonds, 17012 residues, 43 models selected |
| 80983 | | |
| 80984 | | > select add #48 |
| 80985 | | |
| 80986 | | 137755 atoms, 140330 bonds, 6 pseudobonds, 17311 residues, 44 models selected |
| 80987 | | |
| 80988 | | > select add #49 |
| 80989 | | |
| 80990 | | 138819 atoms, 141410 bonds, 7 pseudobonds, 17446 residues, 46 models selected |
| 80991 | | |
| 80992 | | > select add #50 |
| 80993 | | |
| 80994 | | 140019 atoms, 142628 bonds, 7 pseudobonds, 17596 residues, 47 models selected |
| 80995 | | |
| 80996 | | > select add #51 |
| 80997 | | |
| 80998 | | 141369 atoms, 144001 bonds, 7 pseudobonds, 17763 residues, 48 models selected |
| 80999 | | |
| 81000 | | > select add #52 |
| 81001 | | |
| 81002 | | 142719 atoms, 145374 bonds, 7 pseudobonds, 17930 residues, 49 models selected |
| 81003 | | |
| 81004 | | > select add #53 |
| 81005 | | |
| 81006 | | 144069 atoms, 146747 bonds, 7 pseudobonds, 18097 residues, 50 models selected |
| 81007 | | |
| 81008 | | > select add #57 |
| 81009 | | |
| 81010 | | 163039 atoms, 165699 bonds, 14 pseudobonds, 22843 residues, 52 models selected |
| 81011 | | |
| 81012 | | > select add #61 |
| 81013 | | |
| 81014 | | 197107 atoms, 200385 bonds, 18 pseudobonds, 27117 residues, 54 models selected |
| 81015 | | |
| 81016 | | > cartoon style width 2.5 thickness 0.6 xsection oval modeHelix wrap sides 16 |
| 81017 | | > arrows false |
| 81018 | | |
| 81019 | | > select add #56 |
| 81020 | | |
| 81021 | | 197107 atoms, 200385 bonds, 18 pseudobonds, 27117 residues, 56 models selected |
| 81022 | | |
| 81023 | | > cartoon style width 2.5 thickness 0.6 xsection oval modeHelix wrap sides 16 |
| 81024 | | > arrows false |
| 81025 | | |
| 81026 | | > show #!61 models |
| 81027 | | |
| 81028 | | > show #!57 models |
| 81029 | | |
| 81030 | | > select subtract #57 |
| 81031 | | |
| 81032 | | 178137 atoms, 181433 bonds, 11 pseudobonds, 22371 residues, 54 models selected |
| 81033 | | |
| 81034 | | > hide #!57 models |
| 81035 | | |
| 81036 | | > select subtract #61 |
| 81037 | | |
| 81038 | | 144069 atoms, 146747 bonds, 7 pseudobonds, 18097 residues, 52 models selected |
| 81039 | | |
| 81040 | | > select subtract #56 |
| 81041 | | |
| 81042 | | 144069 atoms, 146747 bonds, 7 pseudobonds, 18097 residues, 50 models selected |
| 81043 | | |
| 81044 | | > select subtract #55 |
| 81045 | | |
| 81046 | | 142098 atoms, 144745 bonds, 7 pseudobonds, 17853 residues, 49 models selected |
| 81047 | | |
| 81048 | | > select subtract #54 |
| 81049 | | |
| 81050 | | 141869 atoms, 144517 bonds, 7 pseudobonds, 17822 residues, 48 models selected |
| 81051 | | |
| 81052 | | > select subtract #53 |
| 81053 | | |
| 81054 | | 140519 atoms, 143144 bonds, 7 pseudobonds, 17655 residues, 47 models selected |
| 81055 | | |
| 81056 | | > select subtract #52 |
| 81057 | | |
| 81058 | | 139169 atoms, 141771 bonds, 7 pseudobonds, 17488 residues, 46 models selected |
| 81059 | | |
| 81060 | | > select subtract #51 |
| 81061 | | |
| 81062 | | 137819 atoms, 140398 bonds, 7 pseudobonds, 17321 residues, 45 models selected |
| 81063 | | |
| 81064 | | > select subtract #50 |
| 81065 | | |
| 81066 | | 136619 atoms, 139180 bonds, 7 pseudobonds, 17171 residues, 44 models selected |
| 81067 | | |
| 81068 | | > select subtract #49 |
| 81069 | | |
| 81070 | | 135555 atoms, 138100 bonds, 6 pseudobonds, 17036 residues, 42 models selected |
| 81071 | | |
| 81072 | | > select subtract #48 |
| 81073 | | |
| 81074 | | 133222 atoms, 135728 bonds, 6 pseudobonds, 16737 residues, 41 models selected |
| 81075 | | |
| 81076 | | > select subtract #47 |
| 81077 | | |
| 81078 | | 132059 atoms, 134551 bonds, 6 pseudobonds, 16588 residues, 40 models selected |
| 81079 | | |
| 81080 | | > select subtract #46 |
| 81081 | | |
| 81082 | | 130378 atoms, 132851 bonds, 5 pseudobonds, 16379 residues, 38 models selected |
| 81083 | | |
| 81084 | | > select subtract #45 |
| 81085 | | |
| 81086 | | 127499 atoms, 129923 bonds, 4 pseudobonds, 16017 residues, 36 models selected |
| 81087 | | |
| 81088 | | > select subtract #44 |
| 81089 | | |
| 81090 | | 125011 atoms, 127405 bonds, 3 pseudobonds, 15704 residues, 34 models selected |
| 81091 | | |
| 81092 | | > select subtract #43 |
| 81093 | | |
| 81094 | | 123139 atoms, 125501 bonds, 3 pseudobonds, 15461 residues, 33 models selected |
| 81095 | | |
| 81096 | | > select subtract #42 |
| 81097 | | |
| 81098 | | 121130 atoms, 123453 bonds, 3 pseudobonds, 15209 residues, 32 models selected |
| 81099 | | |
| 81100 | | > select subtract #41 |
| 81101 | | |
| 81102 | | 116444 atoms, 118655 bonds, 3 pseudobonds, 14623 residues, 31 models selected |
| 81103 | | |
| 81104 | | > select subtract #39 |
| 81105 | | |
| 81106 | | 114588 atoms, 116764 bonds, 3 pseudobonds, 14390 residues, 30 models selected |
| 81107 | | |
| 81108 | | > select subtract #38 |
| 81109 | | |
| 81110 | | 109825 atoms, 111884 bonds, 3 pseudobonds, 13799 residues, 29 models selected |
| 81111 | | |
| 81112 | | > select subtract #40 |
| 81113 | | |
| 81114 | | 71059 atoms, 72388 bonds, 8895 residues, 27 models selected |
| 81115 | | |
| 81116 | | > select subtract #34 |
| 81117 | | |
| 81118 | | 35591 atoms, 36271 bonds, 4418 residues, 15 models selected |
| 81119 | | |
| 81120 | | > select subtract #29 |
| 81121 | | |
| 81122 | | 34391 atoms, 35053 bonds, 4268 residues, 14 models selected |
| 81123 | | |
| 81124 | | > select subtract #28 |
| 81125 | | |
| 81126 | | 32420 atoms, 33051 bonds, 4024 residues, 13 models selected |
| 81127 | | |
| 81128 | | > select subtract #27 |
| 81129 | | |
| 81130 | | 30449 atoms, 31049 bonds, 3780 residues, 12 models selected |
| 81131 | | |
| 81132 | | > select subtract #26 |
| 81133 | | |
| 81134 | | 28478 atoms, 29047 bonds, 3536 residues, 11 models selected |
| 81135 | | |
| 81136 | | > select subtract #25 |
| 81137 | | |
| 81138 | | 26507 atoms, 27045 bonds, 3292 residues, 10 models selected |
| 81139 | | |
| 81140 | | > select subtract #24 |
| 81141 | | |
| 81142 | | 24536 atoms, 25043 bonds, 3048 residues, 9 models selected |
| 81143 | | |
| 81144 | | > select subtract #23 |
| 81145 | | |
| 81146 | | 22565 atoms, 23041 bonds, 2804 residues, 8 models selected |
| 81147 | | |
| 81148 | | > select subtract #22 |
| 81149 | | |
| 81150 | | 20594 atoms, 21039 bonds, 2560 residues, 7 models selected |
| 81151 | | |
| 81152 | | > select subtract #21 |
| 81153 | | |
| 81154 | | 18623 atoms, 19037 bonds, 2316 residues, 6 models selected |
| 81155 | | |
| 81156 | | > select subtract #20 |
| 81157 | | |
| 81158 | | 16652 atoms, 17035 bonds, 2072 residues, 5 models selected |
| 81159 | | |
| 81160 | | > select subtract #19 |
| 81161 | | |
| 81162 | | 15489 atoms, 15858 bonds, 1923 residues, 4 models selected |
| 81163 | | |
| 81164 | | > select subtract #18 |
| 81165 | | |
| 81166 | | 14289 atoms, 14640 bonds, 1773 residues, 3 models selected |
| 81167 | | |
| 81168 | | > select subtract #17 |
| 81169 | | |
| 81170 | | 9526 atoms, 9760 bonds, 1182 residues, 2 models selected |
| 81171 | | |
| 81172 | | > select subtract #16 |
| 81173 | | |
| 81174 | | 4763 atoms, 4880 bonds, 591 residues, 1 model selected |
| 81175 | | |
| 81176 | | > select subtract #15 |
| 81177 | | |
| 81178 | | Nothing selected |
| 81179 | | |
| 81180 | | > hide #20 models |
| 81181 | | |
| 81182 | | > hide #21 models |
| 81183 | | |
| 81184 | | > hide #22 models |
| 81185 | | |
| 81186 | | > hide #23 models |
| 81187 | | |
| 81188 | | > hide #24 models |
| 81189 | | |
| 81190 | | > hide #25 models |
| 81191 | | |
| 81192 | | > hide #26 models |
| 81193 | | |
| 81194 | | > hide #27 models |
| 81195 | | |
| 81196 | | > hide #28 models |
| 81197 | | |
| 81198 | | > hide #19 models |
| 81199 | | |
| 81200 | | > hide #18 models |
| 81201 | | |
| 81202 | | > hide #17 models |
| 81203 | | |
| 81204 | | > hide #16 models |
| 81205 | | |
| 81206 | | > hide #29 models |
| 81207 | | |
| 81208 | | > hide #!34 models |
| 81209 | | |
| 81210 | | > hide #!54 models |
| 81211 | | |
| 81212 | | > hide #55 models |
| 81213 | | |
| 81214 | | > hide #!61 models |
| 81215 | | |
| 81216 | | > show #!61 models |
| 81217 | | |
| 81218 | | > hide #15 models |
| 81219 | | |
| 81220 | | > show #15 models |
| 81221 | | |
| 81222 | | > hide #15 models |
| 81223 | | |
| 81224 | | > show #15 models |
| 81225 | | |
| 81226 | | > show #16 models |
| 81227 | | |
| 81228 | | > hide #16 models |
| 81229 | | |
| 81230 | | > show #16 models |
| 81231 | | |
| 81232 | | > hide #16 models |
| 81233 | | |
| 81234 | | > hide #15 models |
| 81235 | | |
| 81236 | | > show #15 models |
| 81237 | | |
| 81238 | | > hide #15 models |
| 81239 | | |
| 81240 | | > show #15 models |
| 81241 | | |
| 81242 | | > hide #15 models |
| 81243 | | |
| 81244 | | > show #15 models |
| 81245 | | |
| 81246 | | > hide #15 models |
| 81247 | | |
| 81248 | | > show #15 models |
| 81249 | | |
| 81250 | | > hide #15 models |
| 81251 | | |
| 81252 | | > show #16 models |
| 81253 | | |
| 81254 | | > hide #16 models |
| 81255 | | |
| 81256 | | > show #16 models |
| 81257 | | |
| 81258 | | > hide #16 models |
| 81259 | | |
| 81260 | | > show #15 models |
| 81261 | | |
| 81262 | | > hide #15 models |
| 81263 | | |
| 81264 | | > show #17 models |
| 81265 | | |
| 81266 | | > hide #17 models |
| 81267 | | |
| 81268 | | > show #17 models |
| 81269 | | |
| 81270 | | > hide #17 models |
| 81271 | | |
| 81272 | | > show #20 models |
| 81273 | | |
| 81274 | | > hide #20 models |
| 81275 | | |
| 81276 | | > show #20 models |
| 81277 | | |
| 81278 | | > hide #20 models |
| 81279 | | |
| 81280 | | > show #19 models |
| 81281 | | |
| 81282 | | > hide #19 models |
| 81283 | | |
| 81284 | | > show #19 models |
| 81285 | | |
| 81286 | | > hide #19 models |
| 81287 | | |
| 81288 | | > show #19 models |
| 81289 | | |
| 81290 | | > hide #19 models |
| 81291 | | |
| 81292 | | > show #19 models |
| 81293 | | |
| 81294 | | > hide #19 models |
| 81295 | | |
| 81296 | | > show #47 models |
| 81297 | | |
| 81298 | | > hide #47 models |
| 81299 | | |
| 81300 | | > show #48 models |
| 81301 | | |
| 81302 | | > hide #48 models |
| 81303 | | |
| 81304 | | > show #48 models |
| 81305 | | |
| 81306 | | > hide #48 models |
| 81307 | | |
| 81308 | | > show #!49 models |
| 81309 | | |
| 81310 | | > hide #!49 models |
| 81311 | | |
| 81312 | | > show #50 models |
| 81313 | | |
| 81314 | | > hide #50 models |
| 81315 | | |
| 81316 | | > show #50 models |
| 81317 | | |
| 81318 | | > hide #50 models |
| 81319 | | |
| 81320 | | > show #50 models |
| 81321 | | |
| 81322 | | > hide #50 models |
| 81323 | | |
| 81324 | | > show #!54 models |
| 81325 | | |
| 81326 | | > hide #!54 models |
| 81327 | | |
| 81328 | | > show #55 models |
| 81329 | | |
| 81330 | | > hide #55 models |
| 81331 | | |
| 81332 | | > show #55 models |
| 81333 | | |
| 81334 | | > hide #55 models |
| 81335 | | |
| 81336 | | > show #55 models |
| 81337 | | |
| 81338 | | > hide #55 models |
| 81339 | | |
| 81340 | | > show #55 models |
| 81341 | | |
| 81342 | | > hide #55 models |
| 81343 | | |
| 81344 | | > show #55 models |
| 81345 | | |
| 81346 | | > hide #55 models |
| 81347 | | |
| 81348 | | > show #53 models |
| 81349 | | |
| 81350 | | > hide #53 models |
| 81351 | | |
| 81352 | | > show #20 models |
| 81353 | | |
| 81354 | | > hide #20 models |
| 81355 | | |
| 81356 | | > show #20 models |
| 81357 | | |
| 81358 | | > hide #20 models |
| 81359 | | |
| 81360 | | > show #38 models |
| 81361 | | |
| 81362 | | > hide #38 models |
| 81363 | | |
| 81364 | | > show #38 models |
| 81365 | | |
| 81366 | | > hide #38 models |
| 81367 | | |
| 81368 | | > show #39 models |
| 81369 | | |
| 81370 | | > hide #39 models |
| 81371 | | |
| 81372 | | > show #39 models |
| 81373 | | |
| 81374 | | > hide #39 models |
| 81375 | | |
| 81376 | | > show #39 models |
| 81377 | | |
| 81378 | | > hide #39 models |
| 81379 | | |
| 81380 | | > show #!40 models |
| 81381 | | |
| 81382 | | > hide #!40 models |
| 81383 | | |
| 81384 | | > show #41 models |
| 81385 | | |
| 81386 | | > hide #41 models |
| 81387 | | |
| 81388 | | > show #41 models |
| 81389 | | |
| 81390 | | > hide #41 models |
| 81391 | | |
| 81392 | | > show #42 models |
| 81393 | | |
| 81394 | | > hide #42 models |
| 81395 | | |
| 81396 | | > show #!43 models |
| 81397 | | |
| 81398 | | > hide #!43 models |
| 81399 | | |
| 81400 | | > show #!43 models |
| 81401 | | |
| 81402 | | > hide #!43 models |
| 81403 | | |
| 81404 | | > show #!43 models |
| 81405 | | |
| 81406 | | > hide #!43 models |
| 81407 | | |
| 81408 | | > show #!43 models |
| 81409 | | |
| 81410 | | > hide #!43 models |
| 81411 | | |
| 81412 | | > show #!44 models |
| 81413 | | |
| 81414 | | > hide #!44 models |
| 81415 | | |
| 81416 | | > show #!45 models |
| 81417 | | |
| 81418 | | > hide #!45 models |
| 81419 | | |
| 81420 | | > show #!46 models |
| 81421 | | |
| 81422 | | > hide #!46 models |
| 81423 | | |
| 81424 | | > show #!46 models |
| 81425 | | |
| 81426 | | > hide #!46 models |
| 81427 | | |
| 81428 | | > show #47 models |
| 81429 | | |
| 81430 | | > hide #47 models |
| 81431 | | |
| 81432 | | > show #47 models |
| 81433 | | |
| 81434 | | > hide #47 models |
| 81435 | | |
| 81436 | | > combine #38 #39 #41 #42 #43 #44 #45 #46 #47 #48 #49 #50 #51 #52 #53 #54 #55 |
| 81437 | | |
| 81438 | | Remapping chain ID 'D' in 20240711_copi_golph3_alpha_I592-G900.cif #39 to 'E' |
| 81439 | | Remapping chain ID 'F' in 20240711_copi_golph3_betaprime_L587-D905.cif #42 to |
| 81440 | | 'G' |
| 81441 | | Remapping chain ID 'E' in 20240711_copi_golph3_beta_S711-L953.cif #43 to 'H' |
| 81442 | | Remapping chain ID 'E' in 20240711_copi_golph3_beta_H311-E659.cif #44 to 'I' |
| 81443 | | Remapping chain ID 'E' in 20240711_copi_golph3_beta_M1-H311_K660-A710.cif #45 |
| 81444 | | to 'J' |
| 81445 | | Remapping chain ID 'G' in 20240711_copi_golph3_delta_M1-S273.cif #46 to 'K' |
| 81446 | | Remapping chain ID 'H' in 20240711_copi_golph3_gamma1_K300-F448.cif #47 to 'L' |
| 81447 | | Remapping chain ID 'H' in 20240711_copi_golph3_gamma1_M1-P299.cif #48 to 'M' |
| 81448 | | Remapping chain ID 'H' in 20240711_copi_golph3_gammm1_T449-R609.cif #49 to 'N' |
| 81449 | | Remapping chain ID 'I' in 20240711_copi_golph3_zeta1.cif #50 to 'O' |
| 81450 | | Remapping chain ID 'B' in 20240711_copi_golph3_third_Arf1.cif #53 to 'P' |
| 81451 | | Remapping chain ID 'A' in 20240711_copi_golph3_golph3_.cif #55 to 'Q' |
| 81452 | | |
| 81453 | | > hide #!30 models |
| 81454 | | |
| 81455 | | > show #!30 models |
| 81456 | | |
| 81457 | | > hide #!30 models |
| 81458 | | |
| 81459 | | > show #!30 models |
| 81460 | | |
| 81461 | | > hide #!30 models |
| 81462 | | |
| 81463 | | > show #!30 models |
| 81464 | | |
| 81465 | | > hide #!30 models |
| 81466 | | |
| 81467 | | > show #!30 models |
| 81468 | | |
| 81469 | | > hide #!30 models |
| 81470 | | |
| 81471 | | > show #!30 models |
| 81472 | | |
| 81473 | | > hide #!30 models |
| 81474 | | |
| 81475 | | > show #!30 models |
| 81476 | | |
| 81477 | | > hide #!30 models |
| 81478 | | |
| 81479 | | > show #!30 models |
| 81480 | | |
| 81481 | | > hide #!30 models |
| 81482 | | |
| 81483 | | > show #!30 models |
| 81484 | | |
| 81485 | | > hide #!30 models |
| 81486 | | |
| 81487 | | > show #!30 models |
| 81488 | | |
| 81489 | | > hide #!30 models |
| 81490 | | |
| 81491 | | > show #!30 models |
| 81492 | | |
| 81493 | | > hide #!61 models |
| 81494 | | |
| 81495 | | > show #15 models |
| 81496 | | |
| 81497 | | > hide #15 models |
| 81498 | | |
| 81499 | | > show #15 models |
| 81500 | | |
| 81501 | | > hide #!30 models |
| 81502 | | |
| 81503 | | > show #!30 models |
| 81504 | | |
| 81505 | | > hide #15 models |
| 81506 | | |
| 81507 | | > show #15 models |
| 81508 | | |
| 81509 | | > hide #15 models |
| 81510 | | |
| 81511 | | > show #15 models |
| 81512 | | |
| 81513 | | > hide #15 models |
| 81514 | | |
| 81515 | | > show #15 models |
| 81516 | | |
| 81517 | | > hide #15 models |
| 81518 | | |
| 81519 | | > show #15 models |
| 81520 | | |
| 81521 | | > hide #15 models |
| 81522 | | |
| 81523 | | > hide #!30 models |
| 81524 | | |
| 81525 | | > show #!61 models |
| 81526 | | |
| 81527 | | > show #15 models |
| 81528 | | |
| 81529 | | > hide #15 models |
| 81530 | | |
| 81531 | | > show #15 models |
| 81532 | | |
| 81533 | | > hide #15 models |
| 81534 | | |
| 81535 | | > show #15 models |
| 81536 | | |
| 81537 | | > hide #15 models |
| 81538 | | |
| 81539 | | > show #15 models |
| 81540 | | |
| 81541 | | > hide #15 models |
| 81542 | | |
| 81543 | | > show #15 models |
| 81544 | | |
| 81545 | | > hide #15 models |
| 81546 | | |
| 81547 | | > show #!30 models |
| 81548 | | |
| 81549 | | > select add #30 |
| 81550 | | |
| 81551 | | 34244 atoms, 34863 bonds, 4 pseudobonds, 4298 residues, 2 models selected |
| 81552 | | |
| 81553 | | > cartoon style width 2.5 thickness 0.6 xsection oval modeHelix wrap sides 16 |
| 81554 | | > arrows false |
| 81555 | | |
| 81556 | | > select subtract #30 |
| 81557 | | |
| 81558 | | Nothing selected |
| 81559 | | |
| 81560 | | > hide #!30 models |
| 81561 | | |
| 81562 | | > show #!30 models |
| 81563 | | |
| 81564 | | > hide #!30 models |
| 81565 | | |
| 81566 | | > hide #!61 models |
| 81567 | | |
| 81568 | | > show #!30 models |
| 81569 | | |
| 81570 | | > show #15 models |
| 81571 | | |
| 81572 | | > hide #15 models |
| 81573 | | |
| 81574 | | > show #15 models |
| 81575 | | |
| 81576 | | > hide #15 models |
| 81577 | | |
| 81578 | | > show #16 models |
| 81579 | | |
| 81580 | | > hide #16 models |
| 81581 | | |
| 81582 | | > show #16 models |
| 81583 | | |
| 81584 | | > hide #16 models |
| 81585 | | |
| 81586 | | > show #17 models |
| 81587 | | |
| 81588 | | > hide #17 models |
| 81589 | | |
| 81590 | | > show #18 models |
| 81591 | | |
| 81592 | | > hide #18 models |
| 81593 | | |
| 81594 | | > show #19 models |
| 81595 | | |
| 81596 | | > hide #19 models |
| 81597 | | |
| 81598 | | > show #!61 models |
| 81599 | | |
| 81600 | | > hide #!61 models |
| 81601 | | |
| 81602 | | > show #!61 models |
| 81603 | | |
| 81604 | | > hide #!61 models |
| 81605 | | |
| 81606 | | > show #!61 models |
| 81607 | | |
| 81608 | | > hide #!30 models |
| 81609 | | |
| 81610 | | > show #!30 models |
| 81611 | | |
| 81612 | | > hide #!30 models |
| 81613 | | |
| 81614 | | > show #!30 models |
| 81615 | | |
| 81616 | | > select #30/M:1 |
| 81617 | | |
| 81618 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 81619 | | |
| 81620 | | > delete sel |
| 81621 | | |
| 81622 | | > select #30/K:106 |
| 81623 | | |
| 81624 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 81625 | | |
| 81626 | | > select #30/K:105 |
| 81627 | | |
| 81628 | | 10 atoms, 10 bonds, 1 residue, 1 model selected |
| 81629 | | |
| 81630 | | > select clear |
| 81631 | | |
| 81632 | | > select #30/M:2 |
| 81633 | | |
| 81634 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 81635 | | |
| 81636 | | > select add #30 |
| 81637 | | |
| 81638 | | 34236 atoms, 34855 bonds, 4 pseudobonds, 4297 residues, 2 models selected |
| 81639 | | |
| 81640 | | > select subtract #30 |
| 81641 | | |
| 81642 | | Nothing selected |
| 81643 | | |
| 81644 | | > hide #!30 models |
| 81645 | | |
| 81646 | | > hide #!61 models |
| 81647 | | |
| 81648 | | > show #38 models |
| 81649 | | |
| 81650 | | > show #!61 models |
| 81651 | | |
| 81652 | | > hide #38 models |
| 81653 | | |
| 81654 | | > show #39 models |
| 81655 | | |
| 81656 | | > hide #39 models |
| 81657 | | |
| 81658 | | > show #39 models |
| 81659 | | |
| 81660 | | > hide #39 models |
| 81661 | | |
| 81662 | | > show #39 models |
| 81663 | | |
| 81664 | | > hide #39 models |
| 81665 | | |
| 81666 | | > show #39 models |
| 81667 | | |
| 81668 | | > hide #39 models |
| 81669 | | |
| 81670 | | > show #41 models |
| 81671 | | |
| 81672 | | > hide #41 models |
| 81673 | | |
| 81674 | | > show #41 models |
| 81675 | | |
| 81676 | | > hide #41 models |
| 81677 | | |
| 81678 | | > show #41 models |
| 81679 | | |
| 81680 | | > hide #41 models |
| 81681 | | |
| 81682 | | > show #41 models |
| 81683 | | |
| 81684 | | > hide #41 models |
| 81685 | | |
| 81686 | | > show #42 models |
| 81687 | | |
| 81688 | | > hide #42 models |
| 81689 | | |
| 81690 | | > show #42 models |
| 81691 | | |
| 81692 | | > hide #42 models |
| 81693 | | |
| 81694 | | > show #42 models |
| 81695 | | |
| 81696 | | > hide #42 models |
| 81697 | | |
| 81698 | | > show #!43 models |
| 81699 | | |
| 81700 | | > hide #!43 models |
| 81701 | | |
| 81702 | | > show #!43 models |
| 81703 | | |
| 81704 | | > hide #!43 models |
| 81705 | | |
| 81706 | | > show #!44 models |
| 81707 | | |
| 81708 | | > hide #!44 models |
| 81709 | | |
| 81710 | | > show #!44 models |
| 81711 | | |
| 81712 | | > hide #!44 models |
| 81713 | | |
| 81714 | | > show #!45 models |
| 81715 | | |
| 81716 | | > hide #!45 models |
| 81717 | | |
| 81718 | | > show #!45 models |
| 81719 | | |
| 81720 | | > hide #!45 models |
| 81721 | | |
| 81722 | | > show #!46 models |
| 81723 | | |
| 81724 | | > hide #!46 models |
| 81725 | | |
| 81726 | | > show #!46 models |
| 81727 | | |
| 81728 | | > hide #!46 models |
| 81729 | | |
| 81730 | | > show #!46 models |
| 81731 | | |
| 81732 | | > hide #!46 models |
| 81733 | | |
| 81734 | | > show #!46 models |
| 81735 | | |
| 81736 | | > show #!1 models |
| 81737 | | |
| 81738 | | > hide #!46 models |
| 81739 | | |
| 81740 | | > show #!46 models |
| 81741 | | |
| 81742 | | > select #46/G:255 |
| 81743 | | |
| 81744 | | 4 atoms, 3 bonds, 1 residue, 1 model selected |
| 81745 | | |
| 81746 | | > delete sel |
| 81747 | | |
| 81748 | | > select #46/G:254 |
| 81749 | | |
| 81750 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 81751 | | |
| 81752 | | > delete sel |
| 81753 | | |
| 81754 | | > select #46/G:253 |
| 81755 | | |
| 81756 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 81757 | | |
| 81758 | | > delete sel |
| 81759 | | |
| 81760 | | > select #46/G:252 |
| 81761 | | |
| 81762 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 81763 | | |
| 81764 | | > delete sel |
| 81765 | | |
| 81766 | | > select #46/G:251 |
| 81767 | | |
| 81768 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 81769 | | |
| 81770 | | > delete sel |
| 81771 | | |
| 81772 | | > hide #!1 models |
| 81773 | | |
| 81774 | | > select #46/G:250 |
| 81775 | | |
| 81776 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 81777 | | |
| 81778 | | > delete sel |
| 81779 | | |
| 81780 | | > select #46/G:249 |
| 81781 | | |
| 81782 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 81783 | | |
| 81784 | | > delete sel |
| 81785 | | |
| 81786 | | > select #46/G:248 |
| 81787 | | |
| 81788 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 81789 | | |
| 81790 | | > delete sel |
| 81791 | | |
| 81792 | | > hide #!46 models |
| 81793 | | |
| 81794 | | > show #!46 models |
| 81795 | | |
| 81796 | | > hide #!46 models |
| 81797 | | |
| 81798 | | > show #!46 models |
| 81799 | | |
| 81800 | | > show #47 models |
| 81801 | | |
| 81802 | | > hide #!46 models |
| 81803 | | |
| 81804 | | > hide #47 models |
| 81805 | | |
| 81806 | | > show #47 models |
| 81807 | | |
| 81808 | | > hide #47 models |
| 81809 | | |
| 81810 | | > show #47 models |
| 81811 | | |
| 81812 | | > hide #47 models |
| 81813 | | |
| 81814 | | > show #47 models |
| 81815 | | |
| 81816 | | > hide #47 models |
| 81817 | | |
| 81818 | | > show #48 models |
| 81819 | | |
| 81820 | | > hide #48 models |
| 81821 | | |
| 81822 | | > show #48 models |
| 81823 | | |
| 81824 | | > select #48/H:1 |
| 81825 | | |
| 81826 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 81827 | | |
| 81828 | | > delete sel |
| 81829 | | |
| 81830 | | > select #48/H:2 |
| 81831 | | |
| 81832 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 81833 | | |
| 81834 | | > delete sel |
| 81835 | | |
| 81836 | | > select #48/H:3 |
| 81837 | | |
| 81838 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 81839 | | |
| 81840 | | > delete sel |
| 81841 | | |
| 81842 | | > select #48/H:4 |
| 81843 | | |
| 81844 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 81845 | | |
| 81846 | | > delete sel |
| 81847 | | |
| 81848 | | > select #48/H:5 |
| 81849 | | |
| 81850 | | 11 atoms, 11 bonds, 1 residue, 1 model selected |
| 81851 | | |
| 81852 | | > delete sel |
| 81853 | | |
| 81854 | | > select #48/H:6 |
| 81855 | | |
| 81856 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 81857 | | |
| 81858 | | > delete sel |
| 81859 | | |
| 81860 | | > hide #48 models |
| 81861 | | |
| 81862 | | > show #48 models |
| 81863 | | |
| 81864 | | > select #48/H:7 |
| 81865 | | |
| 81866 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 81867 | | |
| 81868 | | > delete sel |
| 81869 | | |
| 81870 | | > select #48/H:8 |
| 81871 | | |
| 81872 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 81873 | | |
| 81874 | | > delete sel |
| 81875 | | |
| 81876 | | > hide #48 models |
| 81877 | | |
| 81878 | | > show #48 models |
| 81879 | | |
| 81880 | | > select #48/H:9 |
| 81881 | | |
| 81882 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 81883 | | |
| 81884 | | > delete sel |
| 81885 | | |
| 81886 | | > select #48/H:10 |
| 81887 | | |
| 81888 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 81889 | | |
| 81890 | | > delete sel |
| 81891 | | |
| 81892 | | > hide #48 models |
| 81893 | | |
| 81894 | | > show #48 models |
| 81895 | | |
| 81896 | | > select #48/H:11 |
| 81897 | | |
| 81898 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 81899 | | |
| 81900 | | > delete sel |
| 81901 | | |
| 81902 | | > select #48/H:12 |
| 81903 | | |
| 81904 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 81905 | | |
| 81906 | | > delete sel |
| 81907 | | |
| 81908 | | > select #48/H:13 |
| 81909 | | |
| 81910 | | 4 atoms, 3 bonds, 1 residue, 1 model selected |
| 81911 | | |
| 81912 | | > delete sel |
| 81913 | | |
| 81914 | | > select #48/H:14 |
| 81915 | | |
| 81916 | | 4 atoms, 3 bonds, 1 residue, 1 model selected |
| 81917 | | |
| 81918 | | > delete sel |
| 81919 | | |
| 81920 | | > select #48/H:15 |
| 81921 | | |
| 81922 | | 4 atoms, 3 bonds, 1 residue, 1 model selected |
| 81923 | | |
| 81924 | | > delete sel |
| 81925 | | |
| 81926 | | > select #48/H:16 |
| 81927 | | |
| 81928 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 81929 | | |
| 81930 | | > delete sel |
| 81931 | | |
| 81932 | | > hide #48 models |
| 81933 | | |
| 81934 | | > show #48 models |
| 81935 | | |
| 81936 | | > hide #48 models |
| 81937 | | |
| 81938 | | > show #48 models |
| 81939 | | |
| 81940 | | > hide #48 models |
| 81941 | | |
| 81942 | | > show #48 models |
| 81943 | | |
| 81944 | | > hide #48 models |
| 81945 | | |
| 81946 | | > show #47 models |
| 81947 | | |
| 81948 | | > show #48 models |
| 81949 | | |
| 81950 | | > show #!49 models |
| 81951 | | |
| 81952 | | > hide #!49 models |
| 81953 | | |
| 81954 | | > hide #48 models |
| 81955 | | |
| 81956 | | > hide #47 models |
| 81957 | | |
| 81958 | | > show #!1 models |
| 81959 | | |
| 81960 | | > select #61/O:1 |
| 81961 | | |
| 81962 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 81963 | | |
| 81964 | | > delete sel |
| 81965 | | |
| 81966 | | > select #61/O:2 |
| 81967 | | |
| 81968 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 81969 | | |
| 81970 | | > delete sel |
| 81971 | | |
| 81972 | | > select #61/O:3 |
| 81973 | | |
| 81974 | | 5 atoms, 4 bonds, 1 residue, 1 model selected |
| 81975 | | |
| 81976 | | > delete sel |
| 81977 | | |
| 81978 | | > select #61/O:4 |
| 81979 | | |
| 81980 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 81981 | | |
| 81982 | | > delete sel |
| 81983 | | |
| 81984 | | > select #61/O:5 |
| 81985 | | |
| 81986 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 81987 | | |
| 81988 | | > delete sel |
| 81989 | | |
| 81990 | | > hide #!61 models |
| 81991 | | |
| 81992 | | > show #!61 models |
| 81993 | | |
| 81994 | | > show #50 models |
| 81995 | | |
| 81996 | | > hide #50 models |
| 81997 | | |
| 81998 | | > show #50 models |
| 81999 | | |
| 82000 | | > select #50/I:1 |
| 82001 | | |
| 82002 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 82003 | | |
| 82004 | | > delete sel |
| 82005 | | |
| 82006 | | > select #50/I:2 |
| 82007 | | |
| 82008 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 82009 | | |
| 82010 | | > delete sel |
| 82011 | | |
| 82012 | | > select #50/I:3 |
| 82013 | | |
| 82014 | | 5 atoms, 4 bonds, 1 residue, 1 model selected |
| 82015 | | |
| 82016 | | > delete sel |
| 82017 | | |
| 82018 | | > select #50/I:4 |
| 82019 | | |
| 82020 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 82021 | | |
| 82022 | | > delete sel |
| 82023 | | |
| 82024 | | > select #1 |
| 82025 | | |
| 82026 | | 2 models selected |
| 82027 | | |
| 82028 | | > select #50/I:5 |
| 82029 | | |
| 82030 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 82031 | | |
| 82032 | | > delete sel |
| 82033 | | |
| 82034 | | > hide #50 models |
| 82035 | | |
| 82036 | | > show #50 models |
| 82037 | | |
| 82038 | | > show #29 models |
| 82039 | | |
| 82040 | | > select #29/I:1 |
| 82041 | | |
| 82042 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 82043 | | |
| 82044 | | > delete sel |
| 82045 | | |
| 82046 | | > select #29/I:2 |
| 82047 | | |
| 82048 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 82049 | | |
| 82050 | | > delete sel |
| 82051 | | |
| 82052 | | > select #29/I:3 |
| 82053 | | |
| 82054 | | 5 atoms, 4 bonds, 1 residue, 1 model selected |
| 82055 | | |
| 82056 | | > delete sel |
| 82057 | | |
| 82058 | | > select #29/I:4 |
| 82059 | | |
| 82060 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 82061 | | |
| 82062 | | > delete sel |
| 82063 | | |
| 82064 | | > select #29/I:5 |
| 82065 | | |
| 82066 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 82067 | | |
| 82068 | | > delete sel |
| 82069 | | |
| 82070 | | > hide #29 models |
| 82071 | | |
| 82072 | | > show #18 models |
| 82073 | | |
| 82074 | | > select #18/I:1 |
| 82075 | | |
| 82076 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 82077 | | |
| 82078 | | > delete sel |
| 82079 | | |
| 82080 | | > select #18/I:2 |
| 82081 | | |
| 82082 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 82083 | | |
| 82084 | | > delete sel |
| 82085 | | |
| 82086 | | > select #18/I:3 |
| 82087 | | |
| 82088 | | 5 atoms, 4 bonds, 1 residue, 1 model selected |
| 82089 | | |
| 82090 | | > delete sel |
| 82091 | | |
| 82092 | | > select #18/I:4 |
| 82093 | | |
| 82094 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 82095 | | |
| 82096 | | > delete sel |
| 82097 | | |
| 82098 | | > select #18/I:5 |
| 82099 | | |
| 82100 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 82101 | | |
| 82102 | | > delete sel |
| 82103 | | |
| 82104 | | > hide #18 models |
| 82105 | | |
| 82106 | | > show #15 models |
| 82107 | | |
| 82108 | | > hide #15 models |
| 82109 | | |
| 82110 | | > show #16 models |
| 82111 | | |
| 82112 | | > hide #16 models |
| 82113 | | |
| 82114 | | > show #17 models |
| 82115 | | |
| 82116 | | > hide #17 models |
| 82117 | | |
| 82118 | | > show #19 models |
| 82119 | | |
| 82120 | | > hide #19 models |
| 82121 | | |
| 82122 | | > show #20 models |
| 82123 | | |
| 82124 | | > hide #20 models |
| 82125 | | |
| 82126 | | > hide #!1 models |
| 82127 | | |
| 82128 | | > show #38 models |
| 82129 | | |
| 82130 | | > show #39 models |
| 82131 | | |
| 82132 | | > hide #!61 models |
| 82133 | | |
| 82134 | | > show #!40 models |
| 82135 | | |
| 82136 | | > hide #!40 models |
| 82137 | | |
| 82138 | | > show #41 models |
| 82139 | | |
| 82140 | | > show #42 models |
| 82141 | | |
| 82142 | | > show #!43 models |
| 82143 | | |
| 82144 | | > show #!44 models |
| 82145 | | |
| 82146 | | > show #!45 models |
| 82147 | | |
| 82148 | | > show #!46 models |
| 82149 | | |
| 82150 | | > show #!61 models |
| 82151 | | |
| 82152 | | > hide #!61 models |
| 82153 | | |
| 82154 | | > show #!61 models |
| 82155 | | |
| 82156 | | > show #47 models |
| 82157 | | |
| 82158 | | > show #48 models |
| 82159 | | |
| 82160 | | > hide #48 models |
| 82161 | | |
| 82162 | | > show #48 models |
| 82163 | | |
| 82164 | | > show #!49 models |
| 82165 | | |
| 82166 | | > show #51 models |
| 82167 | | |
| 82168 | | > show #52 models |
| 82169 | | |
| 82170 | | > show #53 models |
| 82171 | | |
| 82172 | | > show #!54 models |
| 82173 | | |
| 82174 | | > show #55 models |
| 82175 | | |
| 82176 | | > show #!57 models |
| 82177 | | |
| 82178 | | > hide #!57 models |
| 82179 | | |
| 82180 | | > show #!1 models |
| 82181 | | |
| 82182 | | > hide #!1 models |
| 82183 | | |
| 82184 | | > show #!30 models |
| 82185 | | |
| 82186 | | > hide #!30 models |
| 82187 | | |
| 82188 | | > close #30 |
| 82189 | | |
| 82190 | | > combine #38 #39 #41 #42 #43 #44 #45 #46 #47 #48 #49 #50 #51 #52 #53 #54 #55 |
| 82191 | | |
| 82192 | | Remapping chain ID 'D' in 20240711_copi_golph3_alpha_I592-G900.cif #39 to 'E' |
| 82193 | | Remapping chain ID 'F' in 20240711_copi_golph3_betaprime_L587-D905.cif #42 to |
| 82194 | | 'G' |
| 82195 | | Remapping chain ID 'E' in 20240711_copi_golph3_beta_S711-L953.cif #43 to 'H' |
| 82196 | | Remapping chain ID 'E' in 20240711_copi_golph3_beta_H311-E659.cif #44 to 'I' |
| 82197 | | Remapping chain ID 'E' in 20240711_copi_golph3_beta_M1-H311_K660-A710.cif #45 |
| 82198 | | to 'J' |
| 82199 | | Remapping chain ID 'G' in 20240711_copi_golph3_delta_M1-S273.cif #46 to 'K' |
| 82200 | | Remapping chain ID 'H' in 20240711_copi_golph3_gamma1_K300-F448.cif #47 to 'L' |
| 82201 | | Remapping chain ID 'H' in 20240711_copi_golph3_gamma1_M1-P299.cif #48 to 'M' |
| 82202 | | Remapping chain ID 'H' in 20240711_copi_golph3_gammm1_T449-R609.cif #49 to 'N' |
| 82203 | | Remapping chain ID 'I' in 20240711_copi_golph3_zeta1.cif #50 to 'O' |
| 82204 | | Remapping chain ID 'B' in 20240711_copi_golph3_third_Arf1.cif #53 to 'P' |
| 82205 | | Remapping chain ID 'A' in 20240711_copi_golph3_golph3_.cif #55 to 'Q' |
| 82206 | | |
| 82207 | | > hide #!61 models |
| 82208 | | |
| 82209 | | > show #!61 models |
| 82210 | | |
| 82211 | | > hide #!61 models |
| 82212 | | |
| 82213 | | > hide #!30 models |
| 82214 | | |
| 82215 | | > show #!30 models |
| 82216 | | |
| 82217 | | > hide #!30 models |
| 82218 | | |
| 82219 | | > show #!30 models |
| 82220 | | |
| 82221 | | > hide #!30 models |
| 82222 | | |
| 82223 | | > show #!30 models |
| 82224 | | |
| 82225 | | > select add #1 |
| 82226 | | |
| 82227 | | 2 models selected |
| 82228 | | |
| 82229 | | > select add #2 |
| 82230 | | |
| 82231 | | 4 models selected |
| 82232 | | |
| 82233 | | > select add #3 |
| 82234 | | |
| 82235 | | 6 models selected |
| 82236 | | |
| 82237 | | > select add #4 |
| 82238 | | |
| 82239 | | 8 models selected |
| 82240 | | |
| 82241 | | > select add #5 |
| 82242 | | |
| 82243 | | 10 models selected |
| 82244 | | |
| 82245 | | > select add #6 |
| 82246 | | |
| 82247 | | 12 models selected |
| 82248 | | |
| 82249 | | > select add #7 |
| 82250 | | |
| 82251 | | 14 models selected |
| 82252 | | |
| 82253 | | > select add #8 |
| 82254 | | |
| 82255 | | 16 models selected |
| 82256 | | |
| 82257 | | > select add #9 |
| 82258 | | |
| 82259 | | 18 models selected |
| 82260 | | |
| 82261 | | > select add #10 |
| 82262 | | |
| 82263 | | 20 models selected |
| 82264 | | |
| 82265 | | > select add #11 |
| 82266 | | |
| 82267 | | 22 models selected |
| 82268 | | |
| 82269 | | > select add #12 |
| 82270 | | |
| 82271 | | 24 models selected |
| 82272 | | |
| 82273 | | > select add #13 |
| 82274 | | |
| 82275 | | 26 models selected |
| 82276 | | |
| 82277 | | > select add #14 |
| 82278 | | |
| 82279 | | 28 models selected |
| 82280 | | |
| 82281 | | > select add #15 |
| 82282 | | |
| 82283 | | 4763 atoms, 4880 bonds, 591 residues, 29 models selected |
| 82284 | | |
| 82285 | | > select add #16 |
| 82286 | | |
| 82287 | | 9526 atoms, 9760 bonds, 1182 residues, 30 models selected |
| 82288 | | |
| 82289 | | > select add #17 |
| 82290 | | |
| 82291 | | 14289 atoms, 14640 bonds, 1773 residues, 31 models selected |
| 82292 | | |
| 82293 | | > select add #18 |
| 82294 | | |
| 82295 | | 15451 atoms, 15820 bonds, 1918 residues, 32 models selected |
| 82296 | | |
| 82297 | | > select add #19 |
| 82298 | | |
| 82299 | | 16614 atoms, 16997 bonds, 2067 residues, 33 models selected |
| 82300 | | |
| 82301 | | > select add #20 |
| 82302 | | |
| 82303 | | 18585 atoms, 18999 bonds, 2311 residues, 34 models selected |
| 82304 | | |
| 82305 | | > select add #21 |
| 82306 | | |
| 82307 | | 20556 atoms, 21001 bonds, 2555 residues, 35 models selected |
| 82308 | | |
| 82309 | | > select add #22 |
| 82310 | | |
| 82311 | | 22527 atoms, 23003 bonds, 2799 residues, 36 models selected |
| 82312 | | |
| 82313 | | > select add #23 |
| 82314 | | |
| 82315 | | 24498 atoms, 25005 bonds, 3043 residues, 37 models selected |
| 82316 | | |
| 82317 | | > select add #24 |
| 82318 | | |
| 82319 | | 26469 atoms, 27007 bonds, 3287 residues, 38 models selected |
| 82320 | | |
| 82321 | | > select add #25 |
| 82322 | | |
| 82323 | | 28440 atoms, 29009 bonds, 3531 residues, 39 models selected |
| 82324 | | |
| 82325 | | > select add #26 |
| 82326 | | |
| 82327 | | 30411 atoms, 31011 bonds, 3775 residues, 40 models selected |
| 82328 | | |
| 82329 | | > select add #27 |
| 82330 | | |
| 82331 | | 32382 atoms, 33013 bonds, 4019 residues, 41 models selected |
| 82332 | | |
| 82333 | | > select add #28 |
| 82334 | | |
| 82335 | | 34353 atoms, 35015 bonds, 4263 residues, 42 models selected |
| 82336 | | |
| 82337 | | > select add #29 |
| 82338 | | |
| 82339 | | 35515 atoms, 36195 bonds, 4408 residues, 43 models selected |
| 82340 | | |
| 82341 | | > select add #30 |
| 82342 | | |
| 82343 | | 69545 atoms, 70843 bonds, 4 pseudobonds, 8677 residues, 45 models selected |
| 82344 | | |
| 82345 | | > select add #34 |
| 82346 | | |
| 82347 | | 105013 atoms, 106960 bonds, 4 pseudobonds, 13154 residues, 55 models selected |
| 82348 | | |
| 82349 | | > select add #38 |
| 82350 | | |
| 82351 | | 109776 atoms, 111840 bonds, 4 pseudobonds, 13745 residues, 56 models selected |
| 82352 | | |
| 82353 | | > select add #39 |
| 82354 | | |
| 82355 | | 111632 atoms, 113731 bonds, 4 pseudobonds, 13978 residues, 57 models selected |
| 82356 | | |
| 82357 | | > select add #40 |
| 82358 | | |
| 82359 | | 150398 atoms, 153227 bonds, 7 pseudobonds, 18882 residues, 59 models selected |
| 82360 | | |
| 82361 | | > select add #41 |
| 82362 | | |
| 82363 | | 155084 atoms, 158025 bonds, 7 pseudobonds, 19468 residues, 62 models selected |
| 82364 | | |
| 82365 | | > select add #42 |
| 82366 | | |
| 82367 | | 157093 atoms, 160073 bonds, 7 pseudobonds, 19720 residues, 63 models selected |
| 82368 | | |
| 82369 | | > select add #43 |
| 82370 | | |
| 82371 | | 158965 atoms, 161977 bonds, 7 pseudobonds, 19963 residues, 64 models selected |
| 82372 | | |
| 82373 | | > select add #44 |
| 82374 | | |
| 82375 | | 161453 atoms, 164495 bonds, 8 pseudobonds, 20276 residues, 66 models selected |
| 82376 | | |
| 82377 | | > select add #45 |
| 82378 | | |
| 82379 | | 164332 atoms, 167423 bonds, 9 pseudobonds, 20638 residues, 68 models selected |
| 82380 | | |
| 82381 | | > select add #46 |
| 82382 | | |
| 82383 | | 165958 atoms, 169068 bonds, 10 pseudobonds, 20839 residues, 70 models selected |
| 82384 | | |
| 82385 | | > select add #47 |
| 82386 | | |
| 82387 | | 167121 atoms, 170245 bonds, 10 pseudobonds, 20988 residues, 71 models selected |
| 82388 | | |
| 82389 | | > select add #48 |
| 82390 | | |
| 82391 | | 169333 atoms, 172495 bonds, 10 pseudobonds, 21271 residues, 72 models selected |
| 82392 | | |
| 82393 | | > select add #49 |
| 82394 | | |
| 82395 | | 170397 atoms, 173575 bonds, 11 pseudobonds, 21406 residues, 74 models selected |
| 82396 | | |
| 82397 | | > select add #50 |
| 82398 | | |
| 82399 | | 171559 atoms, 174755 bonds, 11 pseudobonds, 21551 residues, 75 models selected |
| 82400 | | |
| 82401 | | > select add #51 |
| 82402 | | |
| 82403 | | 172909 atoms, 176128 bonds, 11 pseudobonds, 21718 residues, 76 models selected |
| 82404 | | |
| 82405 | | > select add #52 |
| 82406 | | |
| 82407 | | 174259 atoms, 177501 bonds, 11 pseudobonds, 21885 residues, 77 models selected |
| 82408 | | |
| 82409 | | > select add #53 |
| 82410 | | |
| 82411 | | 175609 atoms, 178874 bonds, 11 pseudobonds, 22052 residues, 78 models selected |
| 82412 | | |
| 82413 | | > select add #54 |
| 82414 | | |
| 82415 | | 175838 atoms, 179102 bonds, 11 pseudobonds, 22083 residues, 79 models selected |
| 82416 | | |
| 82417 | | > select add #55 |
| 82418 | | |
| 82419 | | 177809 atoms, 181104 bonds, 11 pseudobonds, 22327 residues, 80 models selected |
| 82420 | | |
| 82421 | | > select add #56 |
| 82422 | | |
| 82423 | | 177809 atoms, 181104 bonds, 11 pseudobonds, 22327 residues, 82 models selected |
| 82424 | | |
| 82425 | | > select add #57 |
| 82426 | | |
| 82427 | | 196779 atoms, 200056 bonds, 18 pseudobonds, 27073 residues, 84 models selected |
| 82428 | | |
| 82429 | | > select add #61 |
| 82430 | | |
| 82431 | | 230809 atoms, 234704 bonds, 22 pseudobonds, 31342 residues, 86 models selected |
| 82432 | | |
| 82433 | | > cartoon style width 2.5 thickness 0.6 xsection oval modeHelix wrap sides 16 |
| 82434 | | > arrows false |
| 82435 | | |
| 82436 | | > select subtract #38 |
| 82437 | | |
| 82438 | | 226046 atoms, 229824 bonds, 22 pseudobonds, 30751 residues, 85 models selected |
| 82439 | | |
| 82440 | | > select subtract #39 |
| 82441 | | |
| 82442 | | 224190 atoms, 227933 bonds, 22 pseudobonds, 30518 residues, 84 models selected |
| 82443 | | |
| 82444 | | > select subtract #40 |
| 82445 | | |
| 82446 | | 185424 atoms, 188437 bonds, 19 pseudobonds, 25614 residues, 82 models selected |
| 82447 | | |
| 82448 | | > select subtract #41 |
| 82449 | | |
| 82450 | | 180738 atoms, 183639 bonds, 19 pseudobonds, 25028 residues, 79 models selected |
| 82451 | | |
| 82452 | | > select subtract #42 |
| 82453 | | |
| 82454 | | 178729 atoms, 181591 bonds, 19 pseudobonds, 24776 residues, 78 models selected |
| 82455 | | |
| 82456 | | > select subtract #43 |
| 82457 | | |
| 82458 | | 176857 atoms, 179687 bonds, 19 pseudobonds, 24533 residues, 77 models selected |
| 82459 | | |
| 82460 | | > select subtract #44 |
| 82461 | | |
| 82462 | | 174369 atoms, 177169 bonds, 18 pseudobonds, 24220 residues, 75 models selected |
| 82463 | | |
| 82464 | | > select subtract #45 |
| 82465 | | |
| 82466 | | 171490 atoms, 174241 bonds, 17 pseudobonds, 23858 residues, 73 models selected |
| 82467 | | |
| 82468 | | > select subtract #47 |
| 82469 | | |
| 82470 | | 170327 atoms, 173064 bonds, 17 pseudobonds, 23709 residues, 72 models selected |
| 82471 | | |
| 82472 | | > select add #47 |
| 82473 | | |
| 82474 | | 171490 atoms, 174241 bonds, 17 pseudobonds, 23858 residues, 73 models selected |
| 82475 | | |
| 82476 | | > select subtract #46 |
| 82477 | | |
| 82478 | | 169864 atoms, 172596 bonds, 16 pseudobonds, 23657 residues, 71 models selected |
| 82479 | | |
| 82480 | | > select subtract #47 |
| 82481 | | |
| 82482 | | 168701 atoms, 171419 bonds, 16 pseudobonds, 23508 residues, 70 models selected |
| 82483 | | |
| 82484 | | > select subtract #48 |
| 82485 | | |
| 82486 | | 166489 atoms, 169169 bonds, 16 pseudobonds, 23225 residues, 69 models selected |
| 82487 | | |
| 82488 | | > select subtract #49 |
| 82489 | | |
| 82490 | | 165425 atoms, 168089 bonds, 15 pseudobonds, 23090 residues, 67 models selected |
| 82491 | | |
| 82492 | | > select subtract #50 |
| 82493 | | |
| 82494 | | 164263 atoms, 166909 bonds, 15 pseudobonds, 22945 residues, 66 models selected |
| 82495 | | |
| 82496 | | > select subtract #51 |
| 82497 | | |
| 82498 | | 162913 atoms, 165536 bonds, 15 pseudobonds, 22778 residues, 65 models selected |
| 82499 | | |
| 82500 | | > select subtract #52 |
| 82501 | | |
| 82502 | | 161563 atoms, 164163 bonds, 15 pseudobonds, 22611 residues, 64 models selected |
| 82503 | | |
| 82504 | | > select subtract #53 |
| 82505 | | |
| 82506 | | 160213 atoms, 162790 bonds, 15 pseudobonds, 22444 residues, 63 models selected |
| 82507 | | |
| 82508 | | > select subtract #54 |
| 82509 | | |
| 82510 | | 159984 atoms, 162562 bonds, 15 pseudobonds, 22413 residues, 62 models selected |
| 82511 | | |
| 82512 | | > select subtract #55 |
| 82513 | | |
| 82514 | | 158013 atoms, 160560 bonds, 15 pseudobonds, 22169 residues, 61 models selected |
| 82515 | | |
| 82516 | | > select subtract #56 |
| 82517 | | |
| 82518 | | 158013 atoms, 160560 bonds, 15 pseudobonds, 22169 residues, 59 models selected |
| 82519 | | |
| 82520 | | > select subtract #61 |
| 82521 | | |
| 82522 | | 123983 atoms, 125912 bonds, 11 pseudobonds, 17900 residues, 57 models selected |
| 82523 | | |
| 82524 | | > select subtract #57 |
| 82525 | | |
| 82526 | | 105013 atoms, 106960 bonds, 4 pseudobonds, 13154 residues, 55 models selected |
| 82527 | | |
| 82528 | | > select subtract #34 |
| 82529 | | |
| 82530 | | 69545 atoms, 70843 bonds, 4 pseudobonds, 8677 residues, 45 models selected |
| 82531 | | |
| 82532 | | > select subtract #30 |
| 82533 | | |
| 82534 | | 35515 atoms, 36195 bonds, 4408 residues, 43 models selected |
| 82535 | | |
| 82536 | | > select subtract #29 |
| 82537 | | |
| 82538 | | 34353 atoms, 35015 bonds, 4263 residues, 42 models selected |
| 82539 | | |
| 82540 | | > select subtract #28 |
| 82541 | | |
| 82542 | | 32382 atoms, 33013 bonds, 4019 residues, 41 models selected |
| 82543 | | |
| 82544 | | > select subtract #27 |
| 82545 | | |
| 82546 | | 30411 atoms, 31011 bonds, 3775 residues, 40 models selected |
| 82547 | | |
| 82548 | | > select subtract #26 |
| 82549 | | |
| 82550 | | 28440 atoms, 29009 bonds, 3531 residues, 39 models selected |
| 82551 | | |
| 82552 | | > select subtract #25 |
| 82553 | | |
| 82554 | | 26469 atoms, 27007 bonds, 3287 residues, 38 models selected |
| 82555 | | |
| 82556 | | > select subtract #24 |
| 82557 | | |
| 82558 | | 24498 atoms, 25005 bonds, 3043 residues, 37 models selected |
| 82559 | | |
| 82560 | | > select subtract #23 |
| 82561 | | |
| 82562 | | 22527 atoms, 23003 bonds, 2799 residues, 36 models selected |
| 82563 | | |
| 82564 | | > select subtract #22 |
| 82565 | | |
| 82566 | | 20556 atoms, 21001 bonds, 2555 residues, 35 models selected |
| 82567 | | |
| 82568 | | > select subtract #21 |
| 82569 | | |
| 82570 | | 18585 atoms, 18999 bonds, 2311 residues, 34 models selected |
| 82571 | | |
| 82572 | | > select subtract #20 |
| 82573 | | |
| 82574 | | 16614 atoms, 16997 bonds, 2067 residues, 33 models selected |
| 82575 | | |
| 82576 | | > select subtract #19 |
| 82577 | | |
| 82578 | | 15451 atoms, 15820 bonds, 1918 residues, 32 models selected |
| 82579 | | |
| 82580 | | > select subtract #18 |
| 82581 | | |
| 82582 | | 14289 atoms, 14640 bonds, 1773 residues, 31 models selected |
| 82583 | | |
| 82584 | | > select subtract #17 |
| 82585 | | |
| 82586 | | 9526 atoms, 9760 bonds, 1182 residues, 30 models selected |
| 82587 | | |
| 82588 | | > select subtract #16 |
| 82589 | | |
| 82590 | | 4763 atoms, 4880 bonds, 591 residues, 29 models selected |
| 82591 | | |
| 82592 | | > select subtract #15 |
| 82593 | | |
| 82594 | | 28 models selected |
| 82595 | | |
| 82596 | | > select subtract #14 |
| 82597 | | |
| 82598 | | 26 models selected |
| 82599 | | |
| 82600 | | > select subtract #13 |
| 82601 | | |
| 82602 | | 24 models selected |
| 82603 | | |
| 82604 | | > select subtract #12 |
| 82605 | | |
| 82606 | | 22 models selected |
| 82607 | | |
| 82608 | | > select subtract #11 |
| 82609 | | |
| 82610 | | 20 models selected |
| 82611 | | |
| 82612 | | > select subtract #10 |
| 82613 | | |
| 82614 | | 18 models selected |
| 82615 | | |
| 82616 | | > select subtract #9 |
| 82617 | | |
| 82618 | | 16 models selected |
| 82619 | | |
| 82620 | | > select subtract #8 |
| 82621 | | |
| 82622 | | 14 models selected |
| 82623 | | |
| 82624 | | > select subtract #7 |
| 82625 | | |
| 82626 | | 12 models selected |
| 82627 | | |
| 82628 | | > select subtract #6 |
| 82629 | | |
| 82630 | | 10 models selected |
| 82631 | | |
| 82632 | | > select subtract #5 |
| 82633 | | |
| 82634 | | 8 models selected |
| 82635 | | |
| 82636 | | > select subtract #4 |
| 82637 | | |
| 82638 | | 6 models selected |
| 82639 | | |
| 82640 | | > select subtract #3 |
| 82641 | | |
| 82642 | | 4 models selected |
| 82643 | | |
| 82644 | | > select subtract #2 |
| 82645 | | |
| 82646 | | 2 models selected |
| 82647 | | |
| 82648 | | > select subtract #1 |
| 82649 | | |
| 82650 | | Nothing selected |
| 82651 | | |
| 82652 | | > hide #38 models |
| 82653 | | |
| 82654 | | > hide #39 models |
| 82655 | | |
| 82656 | | > hide #41 models |
| 82657 | | |
| 82658 | | > hide #42 models |
| 82659 | | |
| 82660 | | > hide #!43 models |
| 82661 | | |
| 82662 | | > hide #!44 models |
| 82663 | | |
| 82664 | | > hide #!45 models |
| 82665 | | |
| 82666 | | > hide #!46 models |
| 82667 | | |
| 82668 | | > hide #47 models |
| 82669 | | |
| 82670 | | > hide #48 models |
| 82671 | | |
| 82672 | | > hide #!49 models |
| 82673 | | |
| 82674 | | > hide #50 models |
| 82675 | | |
| 82676 | | > hide #51 models |
| 82677 | | |
| 82678 | | > hide #52 models |
| 82679 | | |
| 82680 | | > hide #53 models |
| 82681 | | |
| 82682 | | > hide #!54 models |
| 82683 | | |
| 82684 | | > hide #55 models |
| 82685 | | |
| 82686 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 82687 | | > paper/Chimera sessions/20241210_chimera_for_figures_v2.cxs" |
| 82688 | | |
| 82689 | | > rename #30 combined_model_COPI_GOLPH3 |
| 82690 | | |
| 82691 | | > show #15 models |
| 82692 | | |
| 82693 | | > hide #15 models |
| 82694 | | |
| 82695 | | > show #15 models |
| 82696 | | |
| 82697 | | > hide #15 models |
| 82698 | | |
| 82699 | | > show #16 models |
| 82700 | | |
| 82701 | | > hide #16 models |
| 82702 | | |
| 82703 | | > show #17 models |
| 82704 | | |
| 82705 | | > hide #17 models |
| 82706 | | |
| 82707 | | > show #18 models |
| 82708 | | |
| 82709 | | > hide #18 models |
| 82710 | | |
| 82711 | | > show #19 models |
| 82712 | | |
| 82713 | | > hide #19 models |
| 82714 | | |
| 82715 | | > show #20 models |
| 82716 | | |
| 82717 | | > hide #20 models |
| 82718 | | |
| 82719 | | > show #20 models |
| 82720 | | |
| 82721 | | > hide #20 models |
| 82722 | | |
| 82723 | | > show #20 models |
| 82724 | | |
| 82725 | | > hide #20 models |
| 82726 | | |
| 82727 | | > show #20 models |
| 82728 | | |
| 82729 | | > hide #20 models |
| 82730 | | |
| 82731 | | > show #21 models |
| 82732 | | |
| 82733 | | > hide #21 models |
| 82734 | | |
| 82735 | | > ui tool show Matchmaker |
| 82736 | | |
| 82737 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 82738 | | QTBUG which explains how to reproduce. |
| 82739 | | |
| 82740 | | > show #!54 models |
| 82741 | | |
| 82742 | | > hide #!54 models |
| 82743 | | |
| 82744 | | > show #55 models |
| 82745 | | |
| 82746 | | > hide #55 models |
| 82747 | | |
| 82748 | | > show #55 models |
| 82749 | | |
| 82750 | | > hide #55 models |
| 82751 | | |
| 82752 | | > show #55 models |
| 82753 | | |
| 82754 | | > hide #55 models |
| 82755 | | |
| 82756 | | > matchmaker #20-28 to #55 |
| 82757 | | |
| 82758 | | Parameters |
| 82759 | | --- |
| 82760 | | Chain pairing | bb |
| 82761 | | Alignment algorithm | Needleman-Wunsch |
| 82762 | | Similarity matrix | BLOSUM-62 |
| 82763 | | SS fraction | 0.3 |
| 82764 | | Gap open (HH/SS/other) | 18/18/6 |
| 82765 | | Gap extend | 1 |
| 82766 | | SS matrix | | | H | S | O |
| 82767 | | ---|---|---|--- |
| 82768 | | H | 6 | -9 | -6 |
| 82769 | | S | | 6 | -6 |
| 82770 | | O | | | 4 |
| 82771 | | Iteration cutoff | 2 |
| 82772 | | |
| 82773 | | Matchmaker 20240711_copi_golph3_golph3_.cif, chain A (#55) with |
| 82774 | | 20240711_copi_golph3_golph3_S55-K298_PI4P_binding_site.cif, chain A (#20), |
| 82775 | | sequence alignment score = 1446.4 |
| 82776 | | RMSD between 244 pruned atom pairs is 0.000 angstroms; (across all 244 pairs: |
| 82777 | | 0.000) |
| 82778 | | |
| 82779 | | Matchmaker 20240711_copi_golph3_golph3_.cif, chain A (#55) with |
| 82780 | | 20240711_copi_golph3_golph3_S55-K298_T189_K191_T200.cif, chain A (#21), |
| 82781 | | sequence alignment score = 1446.4 |
| 82782 | | RMSD between 244 pruned atom pairs is 0.000 angstroms; (across all 244 pairs: |
| 82783 | | 0.000) |
| 82784 | | |
| 82785 | | Matchmaker 20240711_copi_golph3_golph3_.cif, chain A (#55) with |
| 82786 | | 20240711_copi_golph3_golph3_S55-K298_E175_K179_E183.cif, chain A (#22), |
| 82787 | | sequence alignment score = 1446.4 |
| 82788 | | RMSD between 244 pruned atom pairs is 0.000 angstroms; (across all 244 pairs: |
| 82789 | | 0.000) |
| 82790 | | |
| 82791 | | Matchmaker 20240711_copi_golph3_golph3_.cif, chain A (#55) with |
| 82792 | | 20240711_copi_golph3_golph3_S55-K298_K179_only.cif, chain A (#23), sequence |
| 82793 | | alignment score = 1446.4 |
| 82794 | | RMSD between 244 pruned atom pairs is 0.000 angstroms; (across all 244 pairs: |
| 82795 | | 0.000) |
| 82796 | | |
| 82797 | | Matchmaker 20240711_copi_golph3_golph3_.cif, chain A (#55) with |
| 82798 | | 20240711_copi_golph3_golph3_S55-K298_K56.cif, chain A (#24), sequence |
| 82799 | | alignment score = 1446.4 |
| 82800 | | RMSD between 244 pruned atom pairs is 0.000 angstroms; (across all 244 pairs: |
| 82801 | | 0.000) |
| 82802 | | |
| 82803 | | Matchmaker 20240711_copi_golph3_golph3_.cif, chain A (#55) with |
| 82804 | | 20240711_copi_golph3_golph3_S55-K298_D223_K224_W225_V226_N227.cif, chain A |
| 82805 | | (#25), sequence alignment score = 1446.4 |
| 82806 | | RMSD between 244 pruned atom pairs is 0.000 angstroms; (across all 244 pairs: |
| 82807 | | 0.000) |
| 82808 | | |
| 82809 | | Matchmaker 20240711_copi_golph3_golph3_.cif, chain A (#55) with |
| 82810 | | 20240711_copi_golph3_golph3_S55-K298_R171A_R174A.cif, chain A (#26), sequence |
| 82811 | | alignment score = 1446.4 |
| 82812 | | RMSD between 244 pruned atom pairs is 0.000 angstroms; (across all 244 pairs: |
| 82813 | | 0.000) |
| 82814 | | |
| 82815 | | Matchmaker 20240711_copi_golph3_golph3_.cif, chain A (#55) with |
| 82816 | | 20240711_copi_golph3_golph3_S55-K298_K179E_E183K.cif, chain A (#27), sequence |
| 82817 | | alignment score = 1446.4 |
| 82818 | | RMSD between 244 pruned atom pairs is 0.000 angstroms; (across all 244 pairs: |
| 82819 | | 0.000) |
| 82820 | | |
| 82821 | | Matchmaker 20240711_copi_golph3_golph3_.cif, chain A (#55) with |
| 82822 | | 20240711_copi_golph3_golph3_S55-K298_N227A_R231A.cif, chain A (#28), sequence |
| 82823 | | alignment score = 1446.4 |
| 82824 | | RMSD between 244 pruned atom pairs is 0.000 angstroms; (across all 244 pairs: |
| 82825 | | 0.000) |
| 82826 | | |
| 82827 | | |
| 82828 | | > show #!54 models |
| 82829 | | |
| 82830 | | > hide #!54 models |
| 82831 | | |
| 82832 | | > show #55 models |
| 82833 | | |
| 82834 | | > hide #55 models |
| 82835 | | |
| 82836 | | > show #55 models |
| 82837 | | |
| 82838 | | > hide #55 models |
| 82839 | | |
| 82840 | | > show #55 models |
| 82841 | | |
| 82842 | | > hide #55 models |
| 82843 | | |
| 82844 | | > show #55 models |
| 82845 | | |
| 82846 | | > hide #55 models |
| 82847 | | |
| 82848 | | > show #55 models |
| 82849 | | |
| 82850 | | > hide #55 models |
| 82851 | | |
| 82852 | | > show #55 models |
| 82853 | | |
| 82854 | | > hide #55 models |
| 82855 | | |
| 82856 | | > show #28 models |
| 82857 | | |
| 82858 | | > hide #28 models |
| 82859 | | |
| 82860 | | > show #28 models |
| 82861 | | |
| 82862 | | > hide #28 models |
| 82863 | | |
| 82864 | | > show #27 models |
| 82865 | | |
| 82866 | | > hide #27 models |
| 82867 | | |
| 82868 | | > show #27 models |
| 82869 | | |
| 82870 | | > hide #27 models |
| 82871 | | |
| 82872 | | > show #26 models |
| 82873 | | |
| 82874 | | > hide #26 models |
| 82875 | | |
| 82876 | | > show #26 models |
| 82877 | | |
| 82878 | | > cartoon style all width 2.5 thickness 0.6 xsection oval modeHelix wrap sides |
| 82879 | | > 16 arrows false |
| 82880 | | |
| 82881 | | > hide #26 models |
| 82882 | | |
| 82883 | | > show #26 models |
| 82884 | | |
| 82885 | | > hide #26 models |
| 82886 | | |
| 82887 | | > show #26 models |
| 82888 | | |
| 82889 | | > hide #26 models |
| 82890 | | |
| 82891 | | > show #26 models |
| 82892 | | |
| 82893 | | > hide #26 models |
| 82894 | | |
| 82895 | | > show #27 models |
| 82896 | | |
| 82897 | | > hide #27 models |
| 82898 | | |
| 82899 | | > show #27 models |
| 82900 | | |
| 82901 | | > hide #27 models |
| 82902 | | |
| 82903 | | > show #28 models |
| 82904 | | |
| 82905 | | > hide #28 models |
| 82906 | | |
| 82907 | | > show #28 models |
| 82908 | | |
| 82909 | | > hide #28 models |
| 82910 | | |
| 82911 | | > show #20 models |
| 82912 | | |
| 82913 | | > hide #20 models |
| 82914 | | |
| 82915 | | > show #20 models |
| 82916 | | |
| 82917 | | > select add #20 |
| 82918 | | |
| 82919 | | 1971 atoms, 2002 bonds, 244 residues, 1 model selected |
| 82920 | | |
| 82921 | | > select subtract #20 |
| 82922 | | |
| 82923 | | Nothing selected |
| 82924 | | |
| 82925 | | > hide #20 models |
| 82926 | | |
| 82927 | | > show #55 models |
| 82928 | | |
| 82929 | | > hide #55 models |
| 82930 | | |
| 82931 | | > show #55 models |
| 82932 | | |
| 82933 | | > hide #55 models |
| 82934 | | |
| 82935 | | > hide #!30 models |
| 82936 | | |
| 82937 | | > show #!30 models |
| 82938 | | |
| 82939 | | > select add #30 |
| 82940 | | |
| 82941 | | 34030 atoms, 34648 bonds, 4 pseudobonds, 4269 residues, 2 models selected |
| 82942 | | |
| 82943 | | > cartoon style all width 2.5 thickness 0.6 xsection oval modeHelix wrap sides |
| 82944 | | > 16 arrows false |
| 82945 | | |
| 82946 | | > select subtract #30 |
| 82947 | | |
| 82948 | | Nothing selected |
| 82949 | | |
| 82950 | | > show #28 models |
| 82951 | | |
| 82952 | | > hide #28 models |
| 82953 | | |
| 82954 | | > show #28 models |
| 82955 | | |
| 82956 | | > hide #28 models |
| 82957 | | |
| 82958 | | > show #28 models |
| 82959 | | |
| 82960 | | > hide #28 models |
| 82961 | | |
| 82962 | | > show #28 models |
| 82963 | | |
| 82964 | | > hide #28 models |
| 82965 | | |
| 82966 | | > show #28 models |
| 82967 | | |
| 82968 | | > hide #28 models |
| 82969 | | |
| 82970 | | > show #28 models |
| 82971 | | |
| 82972 | | > hide #28 models |
| 82973 | | |
| 82974 | | > show #28 models |
| 82975 | | |
| 82976 | | > hide #28 models |
| 82977 | | |
| 82978 | | > show #28 models |
| 82979 | | |
| 82980 | | > hide #28 models |
| 82981 | | |
| 82982 | | > show #28 models |
| 82983 | | |
| 82984 | | > hide #28 models |
| 82985 | | |
| 82986 | | > show #28 models |
| 82987 | | |
| 82988 | | > hide #28 models |
| 82989 | | |
| 82990 | | > show #28 models |
| 82991 | | |
| 82992 | | > hide #28 models |
| 82993 | | |
| 82994 | | > show #28 models |
| 82995 | | |
| 82996 | | > hide #28 models |
| 82997 | | |
| 82998 | | > show #!54 models |
| 82999 | | |
| 83000 | | > hide #!54 models |
| 83001 | | |
| 83002 | | > show #55 models |
| 83003 | | |
| 83004 | | > hide #55 models |
| 83005 | | |
| 83006 | | > show #55 models |
| 83007 | | |
| 83008 | | > hide #55 models |
| 83009 | | |
| 83010 | | > hide #!30 models |
| 83011 | | |
| 83012 | | > show #!30 models |
| 83013 | | |
| 83014 | | > show #!61 models |
| 83015 | | |
| 83016 | | > hide #!61 models |
| 83017 | | |
| 83018 | | > show #!61 models |
| 83019 | | |
| 83020 | | > hide #!61 models |
| 83021 | | |
| 83022 | | > show #!61 models |
| 83023 | | |
| 83024 | | > hide #!61 models |
| 83025 | | |
| 83026 | | > show #55 models |
| 83027 | | |
| 83028 | | > hide #!30 models |
| 83029 | | |
| 83030 | | > show #28 models |
| 83031 | | |
| 83032 | | > hide #28 models |
| 83033 | | |
| 83034 | | > show #28 models |
| 83035 | | |
| 83036 | | > hide #28 models |
| 83037 | | |
| 83038 | | > show #28 models |
| 83039 | | |
| 83040 | | > hide #28 models |
| 83041 | | |
| 83042 | | > show #28 models |
| 83043 | | |
| 83044 | | > hide #28 models |
| 83045 | | |
| 83046 | | > show #!30 models |
| 83047 | | |
| 83048 | | > hide #!30 models |
| 83049 | | |
| 83050 | | > show #!30 models |
| 83051 | | |
| 83052 | | > hide #!30 models |
| 83053 | | |
| 83054 | | > combine #38 #39 #41 #42 #43 #44 #45 #46 #47 #48 #49 #50 #51 #52 #53 #54 #55 |
| 83055 | | |
| 83056 | | Remapping chain ID 'D' in 20240711_copi_golph3_alpha_I592-G900.cif #39 to 'E' |
| 83057 | | Remapping chain ID 'F' in 20240711_copi_golph3_betaprime_L587-D905.cif #42 to |
| 83058 | | 'G' |
| 83059 | | Remapping chain ID 'E' in 20240711_copi_golph3_beta_S711-L953.cif #43 to 'H' |
| 83060 | | Remapping chain ID 'E' in 20240711_copi_golph3_beta_H311-E659.cif #44 to 'I' |
| 83061 | | Remapping chain ID 'E' in 20240711_copi_golph3_beta_M1-H311_K660-A710.cif #45 |
| 83062 | | to 'J' |
| 83063 | | Remapping chain ID 'G' in 20240711_copi_golph3_delta_M1-S273.cif #46 to 'K' |
| 83064 | | Remapping chain ID 'H' in 20240711_copi_golph3_gamma1_K300-F448.cif #47 to 'L' |
| 83065 | | Remapping chain ID 'H' in 20240711_copi_golph3_gamma1_M1-P299.cif #48 to 'M' |
| 83066 | | Remapping chain ID 'H' in 20240711_copi_golph3_gammm1_T449-R609.cif #49 to 'N' |
| 83067 | | Remapping chain ID 'I' in 20240711_copi_golph3_zeta1.cif #50 to 'O' |
| 83068 | | Remapping chain ID 'B' in 20240711_copi_golph3_third_Arf1.cif #53 to 'P' |
| 83069 | | Remapping chain ID 'A' in 20240711_copi_golph3_golph3_.cif #55 to 'Q' |
| 83070 | | |
| 83071 | | > show #!30 models |
| 83072 | | |
| 83073 | | > hide #55 models |
| 83074 | | |
| 83075 | | > hide #!31 models |
| 83076 | | |
| 83077 | | > show #!31 models |
| 83078 | | |
| 83079 | | > hide #!31 models |
| 83080 | | |
| 83081 | | > hide #!30 models |
| 83082 | | |
| 83083 | | > show #!30 models |
| 83084 | | |
| 83085 | | > hide #!30 models |
| 83086 | | |
| 83087 | | > show #!30 models |
| 83088 | | |
| 83089 | | > show #!31 models |
| 83090 | | |
| 83091 | | > hide #!31 models |
| 83092 | | |
| 83093 | | > show #!31 models |
| 83094 | | |
| 83095 | | > hide #!31 models |
| 83096 | | |
| 83097 | | > show #!31 models |
| 83098 | | |
| 83099 | | > hide #!31 models |
| 83100 | | |
| 83101 | | > show #!31 models |
| 83102 | | |
| 83103 | | > hide #!31 models |
| 83104 | | |
| 83105 | | > show #!31 models |
| 83106 | | |
| 83107 | | > hide #!31 models |
| 83108 | | |
| 83109 | | > select all |
| 83110 | | |
| 83111 | | 264839 atoms, 269352 bonds, 26 pseudobonds, 35611 residues, 86 models selected |
| 83112 | | |
| 83113 | | > cartoon style all width 2.5 thickness 0.6 xsection oval modeHelix wrap sides |
| 83114 | | > 16 arrows false |
| 83115 | | |
| 83116 | | > select clear |
| 83117 | | |
| 83118 | | > show #!31 models |
| 83119 | | |
| 83120 | | > hide #!31 models |
| 83121 | | |
| 83122 | | > show #!31 models |
| 83123 | | |
| 83124 | | > show #28 models |
| 83125 | | |
| 83126 | | > hide #28 models |
| 83127 | | |
| 83128 | | > show #28 models |
| 83129 | | |
| 83130 | | > hide #28 models |
| 83131 | | |
| 83132 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 83133 | | QTBUG which explains how to reproduce. |
| 83134 | | |
| 83135 | | > close #31 |
| 83136 | | |
| 83137 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 83138 | | > paper/Chimera sessions/20241210_chimera_for_figures_v3.cxs" |
| 83139 | | |
| 83140 | | > hide #!30 models |
| 83141 | | |
| 83142 | | > show #!12 models |
| 83143 | | |
| 83144 | | > view view1 |
| 83145 | | |
| 83146 | | > cd "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 83147 | | > paper/Figures/2024_Dec" |
| 83148 | | |
| 83149 | | Current working directory is: /Users/becca/Desktop/Postdoc/Grants and paper |
| 83150 | | drafts/Golph3 paper/Figures/2024_Dec |
| 83151 | | |
| 83152 | | > view view2 |
| 83153 | | |
| 83154 | | > view view1 |
| 83155 | | |
| 83156 | | > save triad_outline_top.png supersample 8 transparentBackground true height |
| 83157 | | > 2500 |
| 83158 | | |
| 83159 | | > view view2 |
| 83160 | | |
| 83161 | | > save triad_outline_side.png supersample 8 transparentBackground true height |
| 83162 | | > 2500 |
| 83163 | | |
| 83164 | | > view view1 |
| 83165 | | |
| 83166 | | > show #!30 models |
| 83167 | | |
| 83168 | | > show #!1 models |
| 83169 | | |
| 83170 | | > hide #!1 models |
| 83171 | | |
| 83172 | | > color #12 #ffffff80 models |
| 83173 | | |
| 83174 | | > volume #12 level 0.299 |
| 83175 | | |
| 83176 | | > volume #12 level 0.2915 |
| 83177 | | |
| 83178 | | > volume #12 level 0.299 |
| 83179 | | |
| 83180 | | > view view1 |
| 83181 | | |
| 83182 | | > hide #!12 models |
| 83183 | | |
| 83184 | | > show #!13 models |
| 83185 | | |
| 83186 | | > color #13 #ffffff80 models |
| 83187 | | |
| 83188 | | > volume #13 level 0.004777 |
| 83189 | | |
| 83190 | | > hide #!13 models |
| 83191 | | |
| 83192 | | > show #!13 models |
| 83193 | | |
| 83194 | | > lighting gentle |
| 83195 | | |
| 83196 | | > lighting soft |
| 83197 | | |
| 83198 | | > hide #!30 models |
| 83199 | | |
| 83200 | | > hide #!13 models |
| 83201 | | |
| 83202 | | > show #!12 models |
| 83203 | | |
| 83204 | | > save triad_outline_top_job020.png supersample 8 transparentBackground true |
| 83205 | | > height 2500 |
| 83206 | | |
| 83207 | | > view view2 |
| 83208 | | |
| 83209 | | > save triad_outline_side_job020.png supersample 8 transparentBackground true |
| 83210 | | > height 2500 |
| 83211 | | |
| 83212 | | > hide #!12 models |
| 83213 | | |
| 83214 | | > show #!13 models |
| 83215 | | |
| 83216 | | > view view2 |
| 83217 | | |
| 83218 | | [Repeated 1 time(s)] |
| 83219 | | |
| 83220 | | > view view1 |
| 83221 | | |
| 83222 | | > set silhouetteWidth 3 |
| 83223 | | |
| 83224 | | > save triad_outline_top_bin15fil_silwid3.png supersample 8 |
| 83225 | | > transparentBackground true height 2500 |
| 83226 | | |
| 83227 | | > view view2 |
| 83228 | | |
| 83229 | | > save triad_outline_side_bin15fil_silwid3.png supersample 8 |
| 83230 | | > transparentBackground true height 2500 |
| 83231 | | |
| 83232 | | > hide #!13 models |
| 83233 | | |
| 83234 | | > show #!12 models |
| 83235 | | |
| 83236 | | > save triad_outline_side_job020_silwid3.png supersample 8 |
| 83237 | | > transparentBackground true height 2500 |
| 83238 | | |
| 83239 | | > view view1 |
| 83240 | | |
| 83241 | | > save triad_outline_top_job020_silwid3.png supersample 8 |
| 83242 | | > transparentBackground true height 2500 |
| 83243 | | |
| 83244 | | > set silhouetteWidth 1.5 |
| 83245 | | |
| 83246 | | > lighting |
| 83247 | | |
| 83248 | | Intensity: 0 |
| 83249 | | Direction: 0.577,-0.577,-0.577 |
| 83250 | | Color: 100,100,100 |
| 83251 | | Fill intensity: 0 |
| 83252 | | Fill direction: -0.2,-0.2,-0.959 |
| 83253 | | Fill color: 100,100,100 |
| 83254 | | Ambient intensity: 1.5 |
| 83255 | | Ambient color: 100,100,100 |
| 83256 | | Depth cue: 1, start 0.65, end 1, color 100,100,100 |
| 83257 | | Shadow: False (depth map size 2048, depth bias 0.005) |
| 83258 | | Multishadows: 64 (max 1024, depth map size 1024, depth bias 0.01) |
| 83259 | | |
| 83260 | | > show #!30 models |
| 83261 | | |
| 83262 | | > select ~sel & ##selected |
| 83263 | | |
| 83264 | | Nothing selected |
| 83265 | | |
| 83266 | | > lighting soft |
| 83267 | | |
| 83268 | | > lighting depthCueStart 0.5 depthCueEnd 1 |
| 83269 | | |
| 83270 | | > lighting depthCueStart 0.2 depthCueEnd 1 |
| 83271 | | |
| 83272 | | > lighting depthCueStart 0.3 depthCueEnd 1 |
| 83273 | | |
| 83274 | | > lighting depthCueStart 0.4 depthCueEnd 1 |
| 83275 | | |
| 83276 | | > save triad_leafmodelfit_top_job020_silwid1-5.png supersample 8 |
| 83277 | | > transparentBackground true height 2500 |
| 83278 | | |
| 83279 | | > view view2 |
| 83280 | | |
| 83281 | | > save triad_leafmodelfit_size_job020_silwid1-5.png supersample 8 |
| 83282 | | > transparentBackground true height 2500 |
| 83283 | | |
| 83284 | | > hide #!12 models |
| 83285 | | |
| 83286 | | > show #!13 models |
| 83287 | | |
| 83288 | | > save triad_leafmodelfit_side_bin15fil_silwid1-5.png supersample 8 |
| 83289 | | > transparentBackground true height 2500 |
| 83290 | | |
| 83291 | | > view view1 |
| 83292 | | |
| 83293 | | > save triad_leafmodelfit_top_bin15fil_silwid1-5.png supersample 8 |
| 83294 | | > transparentBackground true height 2500 |
| 83295 | | |
| 83296 | | > hide #!30 models |
| 83297 | | |
| 83298 | | > show #!14 models |
| 83299 | | |
| 83300 | | > color #13 #ffffff00 models |
| 83301 | | |
| 83302 | | > rename #14 relion_locres_filtered_job073_coloredbymodel.mrc |
| 83303 | | |
| 83304 | | > view view1 |
| 83305 | | |
| 83306 | | > save triad_leafdensityfit_top_bin15fil_silwid1-5_soft_depthcue.png |
| 83307 | | > supersample 8 transparentBackground true height 2500 |
| 83308 | | |
| 83309 | | > view view2 |
| 83310 | | |
| 83311 | | > save triad_leafdensityfit_side_bin15fil_silwid1-5_soft_depthcue.png |
| 83312 | | > supersample 8 transparentBackground true height 2500 |
| 83313 | | |
| 83314 | | > hide #!13 models |
| 83315 | | |
| 83316 | | > show #!12 models |
| 83317 | | |
| 83318 | | > color #12 #ffffff00 models |
| 83319 | | |
| 83320 | | > save triad_leafdensityfit_side_job020_silwid1-5_soft_depthcue.png |
| 83321 | | > supersample 8 transparentBackground true height 2500 |
| 83322 | | |
| 83323 | | > view view1 |
| 83324 | | |
| 83325 | | > save triad_leafdensityfit_top_job020_silwid1-5_soft_depthcue.png supersample |
| 83326 | | > 8 transparentBackground true height 2500 |
| 83327 | | |
| 83328 | | > lighting gentle |
| 83329 | | |
| 83330 | | > save triad_leafdensityfit_top_job020_silwid1-5_gentle_depthcue.png |
| 83331 | | > supersample 8 transparentBackground true height 2500 |
| 83332 | | |
| 83333 | | > set silhouetteWidth 5 |
| 83334 | | |
| 83335 | | > hide #!14 models |
| 83336 | | |
| 83337 | | > color #12 white models |
| 83338 | | |
| 83339 | | > save triad_outline_top_job020_silwid5.png supersample 8 |
| 83340 | | > transparentBackground true height 2500 |
| 83341 | | |
| 83342 | | > set silhouetteWidth 15 |
| 83343 | | |
| 83344 | | > save triad_outline_top_job020_silwid15.png supersample 8 |
| 83345 | | > transparentBackground true height 2500 |
| 83346 | | |
| 83347 | | > view view2 |
| 83348 | | |
| 83349 | | > save triad_outline_side_job020_silwid15.png supersample 8 |
| 83350 | | > transparentBackground true height 2500 |
| 83351 | | |
| 83352 | | > set silhouetteWidth 1.5 |
| 83353 | | |
| 83354 | | > show #!14 models |
| 83355 | | |
| 83356 | | > save triad_leafdensityfit_side_job020_silwid1-5_gentle_depthcue.png |
| 83357 | | > supersample 8 transparentBackground true height 2500 |
| 83358 | | |
| 83359 | | > lighting full |
| 83360 | | |
| 83361 | | > lighting |
| 83362 | | |
| 83363 | | Intensity: 0.7 |
| 83364 | | Direction: 0.577,-0.577,-0.577 |
| 83365 | | Color: 100,100,100 |
| 83366 | | Fill intensity: 0.3 |
| 83367 | | Fill direction: -0.2,-0.2,-0.959 |
| 83368 | | Fill color: 100,100,100 |
| 83369 | | Ambient intensity: 0.8 |
| 83370 | | Ambient color: 100,100,100 |
| 83371 | | Depth cue: 1, start 0.4, end 1, color 100,100,100 |
| 83372 | | Shadow: True (depth map size 2048, depth bias 0.005) |
| 83373 | | Multishadows: 64 (max 1024, depth map size 1024, depth bias 0.01) |
| 83374 | | |
| 83375 | | > lighting depthCueStart 0.5 depthCueEnd 1 |
| 83376 | | |
| 83377 | | > lighting depthCueStart 0.25 depthCueEnd 1 |
| 83378 | | |
| 83379 | | > lighting depthCueStart 0.35 depthCueEnd 1 |
| 83380 | | |
| 83381 | | > lighting shadows false |
| 83382 | | |
| 83383 | | > lighting shadows true |
| 83384 | | |
| 83385 | | > lighting shadows false |
| 83386 | | |
| 83387 | | > lighting shadows true |
| 83388 | | |
| 83389 | | > lighting shadows false |
| 83390 | | |
| 83391 | | > save triad_leafdensityfit_side_job020_silwid1-5_full_depthcue.png |
| 83392 | | > supersample 8 transparentBackground true height 2500 |
| 83393 | | |
| 83394 | | > view view1 |
| 83395 | | |
| 83396 | | > save triad_leafdensityfit_top_job020_silwid1-5_full_depthcue.png supersample |
| 83397 | | > 8 transparentBackground true height 2500 |
| 83398 | | |
| 83399 | | > lighting simple |
| 83400 | | |
| 83401 | | > lighting soft |
| 83402 | | |
| 83403 | | > lighting gentle |
| 83404 | | |
| 83405 | | > lighting full |
| 83406 | | |
| 83407 | | > lighting shadows false |
| 83408 | | |
| 83409 | | > lighting simple |
| 83410 | | |
| 83411 | | > lighting shadows false |
| 83412 | | |
| 83413 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 83414 | | > paper/Chimera sessions/20241210_chimera_for_figures_v4.cxs" |
| 83415 | | |
| 83416 | | > lighting simple |
| 83417 | | |
| 83418 | | > save triad_leafdensityfit_top_job020_silwid1-5_simple_depthcue.png |
| 83419 | | > supersample 8 transparentBackground true height 2500 |
| 83420 | | |
| 83421 | | > view view2 |
| 83422 | | |
| 83423 | | > save triad_leafdensityfit_save_job020_silwid1-5_simple_depthcue.png |
| 83424 | | > supersample 8 transparentBackground true height 2500 |
| 83425 | | |
| 83426 | | > hide #!14 models |
| 83427 | | |
| 83428 | | > show #!30 models |
| 83429 | | |
| 83430 | | > color #12 #ffffff3f models |
| 83431 | | |
| 83432 | | > color #12 #ffffff40 models |
| 83433 | | |
| 83434 | | > lighting simple |
| 83435 | | |
| 83436 | | > lighting soft |
| 83437 | | |
| 83438 | | > lighting gentle |
| 83439 | | |
| 83440 | | > lighting full |
| 83441 | | |
| 83442 | | > lighting shadows false |
| 83443 | | |
| 83444 | | > t30 |
| 83445 | | |
| 83446 | | Unknown command: t30 |
| 83447 | | |
| 83448 | | > set #12 t30 |
| 83449 | | |
| 83450 | | Expected a keyword |
| 83451 | | |
| 83452 | | > transparency #12 30 |
| 83453 | | |
| 83454 | | > transparency #12 10 |
| 83455 | | |
| 83456 | | > hide #!12 models |
| 83457 | | |
| 83458 | | > show #!12 models |
| 83459 | | |
| 83460 | | > transparency #12 50 |
| 83461 | | |
| 83462 | | > transparency #12 40 |
| 83463 | | |
| 83464 | | > transparency #12 90 |
| 83465 | | |
| 83466 | | > transparency #12 80 |
| 83467 | | |
| 83468 | | > transparency #12 70 |
| 83469 | | |
| 83470 | | > transparency #12 60 |
| 83471 | | |
| 83472 | | [Repeated 1 time(s)] |
| 83473 | | |
| 83474 | | > transparency #12 50 |
| 83475 | | |
| 83476 | | > view view1 |
| 83477 | | |
| 83478 | | > lighting gentle |
| 83479 | | |
| 83480 | | > lighting |
| 83481 | | |
| 83482 | | Intensity: 0 |
| 83483 | | Direction: 0.577,-0.577,-0.577 |
| 83484 | | Color: 100,100,100 |
| 83485 | | Fill intensity: 0 |
| 83486 | | Fill direction: -0.2,-0.2,-0.959 |
| 83487 | | Fill color: 100,100,100 |
| 83488 | | Ambient intensity: 1.5 |
| 83489 | | Ambient color: 100,100,100 |
| 83490 | | Depth cue: 1, start 0.5, end 1, color 100,100,100 |
| 83491 | | Shadow: False (depth map size 2048, depth bias 0.005) |
| 83492 | | Multishadows: 64 (max 1024, depth map size 128, depth bias 0.05) |
| 83493 | | |
| 83494 | | > lighting depthCueStart 0.4 depthCueEnd 1 |
| 83495 | | |
| 83496 | | > lighting depthCueStart 0.6 depthCueEnd 1 |
| 83497 | | |
| 83498 | | > lighting |
| 83499 | | |
| 83500 | | Intensity: 0 |
| 83501 | | Direction: 0.577,-0.577,-0.577 |
| 83502 | | Color: 100,100,100 |
| 83503 | | Fill intensity: 0 |
| 83504 | | Fill direction: -0.2,-0.2,-0.959 |
| 83505 | | Fill color: 100,100,100 |
| 83506 | | Ambient intensity: 1.5 |
| 83507 | | Ambient color: 100,100,100 |
| 83508 | | Depth cue: 1, start 0.6, end 1, color 100,100,100 |
| 83509 | | Shadow: False (depth map size 2048, depth bias 0.005) |
| 83510 | | Multishadows: 64 (max 1024, depth map size 128, depth bias 0.05) |
| 83511 | | |
| 83512 | | > lighting gentle |
| 83513 | | |
| 83514 | | > graphics silhouettes false |
| 83515 | | |
| 83516 | | > graphics silhouettes true |
| 83517 | | |
| 83518 | | > graphics silhouettes false |
| 83519 | | |
| 83520 | | > graphics silhouettes true |
| 83521 | | |
| 83522 | | > graphics silhouettes false |
| 83523 | | |
| 83524 | | > graphics silhouettes true |
| 83525 | | |
| 83526 | | > lighting shadows true intensity 0.5 |
| 83527 | | |
| 83528 | | > lighting shadows false |
| 83529 | | |
| 83530 | | > lighting gentle |
| 83531 | | |
| 83532 | | > lighting |
| 83533 | | |
| 83534 | | Intensity: 0 |
| 83535 | | Direction: 0.577,-0.577,-0.577 |
| 83536 | | Color: 100,100,100 |
| 83537 | | Fill intensity: 0 |
| 83538 | | Fill direction: -0.2,-0.2,-0.959 |
| 83539 | | Fill color: 100,100,100 |
| 83540 | | Ambient intensity: 1.5 |
| 83541 | | Ambient color: 100,100,100 |
| 83542 | | Depth cue: 1, start 0.6, end 1, color 100,100,100 |
| 83543 | | Shadow: False (depth map size 2048, depth bias 0.005) |
| 83544 | | Multishadows: 64 (max 1024, depth map size 128, depth bias 0.05) |
| 83545 | | |
| 83546 | | > save triad_leafmodelfit_top_job020_silwid1-5_gentle_depthcue.png supersample |
| 83547 | | > 8 transparentBackground true height 2500 |
| 83548 | | |
| 83549 | | > view view2 |
| 83550 | | |
| 83551 | | > save triad_leafmodelfit_side_job020_silwid1-5_gentle_depthcue.png |
| 83552 | | > supersample 8 transparentBackground true height 2500 |
| 83553 | | |
| 83554 | | > lighting full |
| 83555 | | |
| 83556 | | > lighting shadows false |
| 83557 | | |
| 83558 | | > lighting shadows true |
| 83559 | | |
| 83560 | | > lighting shadows false |
| 83561 | | |
| 83562 | | > save triad_leafmodelfit_side_job020_silwid1-5_full_woutshadow_depthcue.png |
| 83563 | | > supersample 8 transparentBackground true height 2500 |
| 83564 | | |
| 83565 | | > view view1 |
| 83566 | | |
| 83567 | | > save triad_leafmodelfit_top_job020_silwid1-5_full_woutshadow_depthcue.png |
| 83568 | | > supersample 8 transparentBackground true height 2500 |
| 83569 | | |
| 83570 | | > lighting simple |
| 83571 | | |
| 83572 | | > save triad_leafmodelfit_top_job020_silwid1-5_simple_depthcue.png supersample |
| 83573 | | > 8 transparentBackground true height 2500 |
| 83574 | | |
| 83575 | | > view view2 |
| 83576 | | |
| 83577 | | > save triad_leafmodelfit_side_job020_silwid1-5_simple_depthcue.png |
| 83578 | | > supersample 8 transparentBackground true height 2500 |
| 83579 | | |
| 83580 | | > lighting soft |
| 83581 | | |
| 83582 | | > save triad_leafmodelfit_side_job020_silwid1-5_soft_depthcue.png supersample |
| 83583 | | > 8 transparentBackground true height 2500 |
| 83584 | | |
| 83585 | | > view view1 |
| 83586 | | |
| 83587 | | > save triad_leafmodelfit_top_job020_silwid1-5_soft_depthcue.png supersample 8 |
| 83588 | | > transparentBackground true height 2500 |
| 83589 | | |
| 83590 | | > view view1 |
| 83591 | | |
| 83592 | | > hide #!30 models |
| 83593 | | |
| 83594 | | > set silhouetteWidth 15 |
| 83595 | | |
| 83596 | | > save triad_outline_top_job020_silwid15_v2.png supersample 8 |
| 83597 | | > transparentBackground true height 2500 |
| 83598 | | |
| 83599 | | > view view2 |
| 83600 | | |
| 83601 | | > save triad_outline_side_job020_silwid15_v2.png supersample 8 |
| 83602 | | > transparentBackground true height 2500 |
| 83603 | | |
| 83604 | | > color #12 #ffffff00 models |
| 83605 | | |
| 83606 | | > save triad_outline_side_job020_silwid15_v3.png supersample 8 |
| 83607 | | > transparentBackground true height 2500 |
| 83608 | | |
| 83609 | | > view view1 |
| 83610 | | |
| 83611 | | > save triad_outline_top_job020_silwid15_v3.png supersample 8 |
| 83612 | | > transparentBackground true height 2500 |
| 83613 | | |
| 83614 | | > set silhouetteWidth 1.5 |
| 83615 | | |
| 83616 | | > show #!30 models |
| 83617 | | |
| 83618 | | > color #12 #ffffff80 models |
| 83619 | | |
| 83620 | | > lighting gentle |
| 83621 | | |
| 83622 | | > save triad_leafmodelfit_top_job020_silwid1-5_gentle_depthcue.png supersample |
| 83623 | | > 8 transparentBackground true height 2500 |
| 83624 | | |
| 83625 | | > hide #!12 models |
| 83626 | | |
| 83627 | | > show #!13 models |
| 83628 | | |
| 83629 | | > hide #!13 models |
| 83630 | | |
| 83631 | | > show #!12 models |
| 83632 | | |
| 83633 | | > hide #!12 models |
| 83634 | | |
| 83635 | | > show #!12 models |
| 83636 | | |
| 83637 | | > color #12 #ffffff3f models |
| 83638 | | |
| 83639 | | > color #12 #ffffff40 models |
| 83640 | | |
| 83641 | | > lighting soft |
| 83642 | | |
| 83643 | | > lighting gentle |
| 83644 | | |
| 83645 | | > lighting soft |
| 83646 | | |
| 83647 | | > lighting simple |
| 83648 | | |
| 83649 | | > lighting full |
| 83650 | | |
| 83651 | | > lighting shadows false |
| 83652 | | |
| 83653 | | > view view1 |
| 83654 | | |
| 83655 | | > transparency #12 75 |
| 83656 | | |
| 83657 | | > lighting full |
| 83658 | | |
| 83659 | | > lighting shadows false |
| 83660 | | |
| 83661 | | > view view1 |
| 83662 | | |
| 83663 | | > save |
| 83664 | | > triad_leafmodelfit_top_job020_silwid1-5_full_woutshadow_depthcue_T75.png |
| 83665 | | > supersample 8 transparentBackground true height 2500 |
| 83666 | | |
| 83667 | | > view view2 |
| 83668 | | |
| 83669 | | > save |
| 83670 | | > triad_leafmodelfit_side_job020_silwid1-5_full_woutshadow_depthcue_T75.png |
| 83671 | | > supersample 8 transparentBackground true height 2500 |
| 83672 | | |
| 83673 | | > lighting gentle |
| 83674 | | |
| 83675 | | > save triad_leafmodelfit_side_job020_silwid1-5_gentle_depthcue_T75.png |
| 83676 | | > supersample 8 transparentBackground true height 2500 |
| 83677 | | |
| 83678 | | > view view1 |
| 83679 | | |
| 83680 | | > save triad_leafmodelfit_top_job020_silwid1-5_gentle_depthcue_T75.png |
| 83681 | | > supersample 8 transparentBackground true height 2500 |
| 83682 | | |
| 83683 | | > lighting simple |
| 83684 | | |
| 83685 | | > lighting shadows false |
| 83686 | | |
| 83687 | | > save triad_leafmodelfit_top_job020_silwid1-5_simple_depthcue_T75.png |
| 83688 | | > supersample 8 transparentBackground true height 2500 |
| 83689 | | |
| 83690 | | > view view2 |
| 83691 | | |
| 83692 | | > save triad_leafmodelfit_side_job020_silwid1-5_simple_depthcue_T75.png |
| 83693 | | > supersample 8 transparentBackground true height 2500 |
| 83694 | | |
| 83695 | | > lighting soft |
| 83696 | | |
| 83697 | | > save triad_leafmodelfit_side_job020_silwid1-5_soft_depthcue_T75.png |
| 83698 | | > supersample 8 transparentBackground true height 2500 |
| 83699 | | |
| 83700 | | > view view1 |
| 83701 | | |
| 83702 | | > save triad_leafmodelfit_top_job020_silwid1-5_soft_depthcue_T75.png |
| 83703 | | > supersample 8 transparentBackground true height 2500 |
| 83704 | | |
| 83705 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 83706 | | > paper/Chimera sessions/20241210_chimera_for_figures_v5.cxs" |
| 83707 | | |
| 83708 | | ——— End of log from Tue Dec 10 13:42:08 2024 ——— |
| 83709 | | |
| 83710 | | opened ChimeraX session |
| 83711 | | |
| 83712 | | > view view1 |
| 83713 | | |
| 83714 | | > view vie1 |
| 83715 | | |
| 83716 | | Expected an objects specifier or a view name or a keyword |
| 83717 | | |
| 83718 | | > view view1 |
| 83719 | | |
| 83720 | | [Repeated 4 time(s)] |
| 83721 | | |
| 83722 | | > lighting soft |
| 83723 | | |
| 83724 | | > view view3 |
| 83725 | | |
| 83726 | | > view view2 |
| 83727 | | |
| 83728 | | [Repeated 1 time(s)] |
| 83729 | | |
| 83730 | | > hide #!12 models |
| 83731 | | |
| 83732 | | > show #!9 models |
| 83733 | | |
| 83734 | | > show #!12 models |
| 83735 | | |
| 83736 | | > color #9 #ffffff00 models |
| 83737 | | |
| 83738 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 83739 | | QTBUG which explains how to reproduce. |
| 83740 | | |
| 83741 | | > hide #!9 models |
| 83742 | | |
| 83743 | | > show #!9 models |
| 83744 | | |
| 83745 | | > hide #!9 models |
| 83746 | | |
| 83747 | | > hide #!12 models |
| 83748 | | |
| 83749 | | > show #!9 models |
| 83750 | | |
| 83751 | | > hide #!9 models |
| 83752 | | |
| 83753 | | > show #!12 models |
| 83754 | | |
| 83755 | | > hide #!12 models |
| 83756 | | |
| 83757 | | > show #!9 models |
| 83758 | | |
| 83759 | | > hide #!9 models |
| 83760 | | |
| 83761 | | > show #!9 models |
| 83762 | | |
| 83763 | | > show #!5 models |
| 83764 | | |
| 83765 | | > color #5 #ffffff81 models |
| 83766 | | |
| 83767 | | > color #5 #ffffff80 models |
| 83768 | | |
| 83769 | | > hide #!9 models |
| 83770 | | |
| 83771 | | > view name view3 |
| 83772 | | |
| 83773 | | > turn x 1 90 |
| 83774 | | |
| 83775 | | [Repeated 4 time(s)] |
| 83776 | | |
| 83777 | | > view view3 |
| 83778 | | |
| 83779 | | > turn x -1 90 |
| 83780 | | |
| 83781 | | > view name view4 |
| 83782 | | |
| 83783 | | [Repeated 1 time(s)] |
| 83784 | | |
| 83785 | | > view view5 |
| 83786 | | |
| 83787 | | > view view6 |
| 83788 | | |
| 83789 | | > view view4 |
| 83790 | | |
| 83791 | | > turn x 180 |
| 83792 | | |
| 83793 | | > view name view18 |
| 83794 | | |
| 83795 | | > view view3 |
| 83796 | | |
| 83797 | | > hide #!5 models |
| 83798 | | |
| 83799 | | > show #!9 models |
| 83800 | | |
| 83801 | | > hide #!30 models |
| 83802 | | |
| 83803 | | > set silhouetteWidth 15 |
| 83804 | | |
| 83805 | | > view view3 |
| 83806 | | |
| 83807 | | > save leaf_outline_side_job073_silwid15.png supersample 8 |
| 83808 | | > transparentBackground true height 2500 |
| 83809 | | |
| 83810 | | > view view4 |
| 83811 | | |
| 83812 | | > save leaf_outline_bottom_job073_silwid15.png supersample 8 |
| 83813 | | > transparentBackground true height 2500 |
| 83814 | | |
| 83815 | | > view view18 |
| 83816 | | |
| 83817 | | > save leaf_outline_top_job073_silwid15.png supersample 8 |
| 83818 | | > transparentBackground true height 2500 |
| 83819 | | |
| 83820 | | > cd "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 83821 | | > paper/Figures/2024_Dec/Figure1" |
| 83822 | | |
| 83823 | | Current working directory is: /Users/becca/Desktop/Postdoc/Grants and paper |
| 83824 | | drafts/Golph3 paper/Figures/2024_Dec/Figure1 |
| 83825 | | |
| 83826 | | > view view4 |
| 83827 | | |
| 83828 | | > show #!30 models |
| 83829 | | |
| 83830 | | > hide #!30 models |
| 83831 | | |
| 83832 | | > show #!30 models |
| 83833 | | |
| 83834 | | > hide #!30 models |
| 83835 | | |
| 83836 | | > hide #!9 models |
| 83837 | | |
| 83838 | | > show #!1 models |
| 83839 | | |
| 83840 | | > graphics silhouettes false |
| 83841 | | |
| 83842 | | > hide #!1 models |
| 83843 | | |
| 83844 | | > show #!5 models |
| 83845 | | |
| 83846 | | > show #!30 models |
| 83847 | | |
| 83848 | | > ui tool show "Side View" |
| 83849 | | |
| 83850 | | > graphics silhouettes true |
| 83851 | | |
| 83852 | | > set silhouetteWidth 1.5 |
| 83853 | | |
| 83854 | | > view view3 |
| 83855 | | |
| 83856 | | > view view4 |
| 83857 | | |
| 83858 | | > hide #!30 models |
| 83859 | | |
| 83860 | | > hide #!5 models |
| 83861 | | |
| 83862 | | > show #!9 models |
| 83863 | | |
| 83864 | | > set silhouetteWidth 15 |
| 83865 | | |
| 83866 | | > view view4 |
| 83867 | | |
| 83868 | | > show #!30 models |
| 83869 | | |
| 83870 | | > hide #!30 models |
| 83871 | | |
| 83872 | | > show #!30 models |
| 83873 | | |
| 83874 | | > hide #!30 models |
| 83875 | | |
| 83876 | | > save leaf_outline_bottom_membrane_removed_job073_silwid15.png supersample 8 |
| 83877 | | > transparentBackground true height 2500 |
| 83878 | | |
| 83879 | | > set silhouetteWidth 1.5 |
| 83880 | | |
| 83881 | | > show #!30 models |
| 83882 | | |
| 83883 | | > hide #!9 models |
| 83884 | | |
| 83885 | | > show #!5 models |
| 83886 | | |
| 83887 | | > view view3 |
| 83888 | | |
| 83889 | | > volume #5 level 0.006 |
| 83890 | | |
| 83891 | | > lighting |
| 83892 | | |
| 83893 | | Intensity: 0 |
| 83894 | | Direction: 0.577,-0.577,-0.577 |
| 83895 | | Color: 100,100,100 |
| 83896 | | Fill intensity: 0 |
| 83897 | | Fill direction: -0.2,-0.2,-0.959 |
| 83898 | | Fill color: 100,100,100 |
| 83899 | | Ambient intensity: 1.5 |
| 83900 | | Ambient color: 100,100,100 |
| 83901 | | Depth cue: 1, start 0.5, end 1, color 100,100,100 |
| 83902 | | Shadow: False (depth map size 2048, depth bias 0.005) |
| 83903 | | Multishadows: 64 (max 1024, depth map size 1024, depth bias 0.01) |
| 83904 | | |
| 83905 | | > lighting soft |
| 83906 | | |
| 83907 | | > save leaf_modelfit_side_job073_soft_silwid1_5_T50.png supersample 8 |
| 83908 | | > transparentBackground true height 2500 |
| 83909 | | |
| 83910 | | > lighting gentle |
| 83911 | | |
| 83912 | | > save leaf_modelfit_side_job073_gentle_silwid1_5_T50.png supersample 8 |
| 83913 | | > transparentBackground true height 2500 |
| 83914 | | |
| 83915 | | > save leaf_modelfit_side_job073_simple_silwid1_5_T50.png supersample 8 |
| 83916 | | > transparentBackground true height 2500 |
| 83917 | | |
| 83918 | | > lighting simple |
| 83919 | | |
| 83920 | | > lighting shadows false |
| 83921 | | |
| 83922 | | > save leaf_modelfit_side_job073_simple_silwid1_5_T50.png supersample 8 |
| 83923 | | > transparentBackground true height 2500 |
| 83924 | | |
| 83925 | | > lighting full |
| 83926 | | |
| 83927 | | > lighting shadows false |
| 83928 | | |
| 83929 | | > save leaf_modelfit_side_job073_full_woutshadows_silwid1_5_T50.png |
| 83930 | | > supersample 8 transparentBackground true height 2500 |
| 83931 | | |
| 83932 | | > lighting full |
| 83933 | | |
| 83934 | | > lighting shadows false |
| 83935 | | |
| 83936 | | > view view4 |
| 83937 | | |
| 83938 | | > save leaf_modelfit_bottow_job073_full_woutshadows_silwid1_5_T50.png |
| 83939 | | > supersample 8 transparentBackground true height 2500 |
| 83940 | | |
| 83941 | | > lighting simple |
| 83942 | | |
| 83943 | | > lighting shadows false |
| 83944 | | |
| 83945 | | > save leaf_modelfit_bottow_job073_simple_silwid1_5_T50.png supersample 8 |
| 83946 | | > transparentBackground true height 2500 |
| 83947 | | |
| 83948 | | > lighting gentle |
| 83949 | | |
| 83950 | | > save leaf_modelfit_bottow_job073_gentle_silwid1_5_T50.png supersample 8 |
| 83951 | | > transparentBackground true height 2500 |
| 83952 | | |
| 83953 | | > lighting soft |
| 83954 | | |
| 83955 | | > save leaf_modelfit_bottow_job073_soft_silwid1_5_T50.png supersample 8 |
| 83956 | | > transparentBackground true height 2500 |
| 83957 | | |
| 83958 | | > set silhouetteWidth 3 |
| 83959 | | |
| 83960 | | > view view3 |
| 83961 | | |
| 83962 | | > volume #5 level 0.0055 |
| 83963 | | |
| 83964 | | > volume #5 level 0.0047 |
| 83965 | | |
| 83966 | | > volume #5 level 0.005 |
| 83967 | | |
| 83968 | | > volume #5 level 0.0055 |
| 83969 | | |
| 83970 | | > lighting soft |
| 83971 | | |
| 83972 | | > volume #5 level 0.0053 |
| 83973 | | |
| 83974 | | > save leaf_modelfit_side_job073_soft_silwid1_5_T50_lowerthresh.png |
| 83975 | | > supersample 8 transparentBackground true height 2500 |
| 83976 | | |
| 83977 | | > view view4 |
| 83978 | | |
| 83979 | | > save leaf_modelfit_bottom_job073_soft_silwid1_5_T50_lowerthresh.png |
| 83980 | | > supersample 8 transparentBackground true height 2500 |
| 83981 | | |
| 83982 | | > lighting gentle |
| 83983 | | |
| 83984 | | > save leaf_modelfit_bottom_job073_gentle_silwid1_5_T50_lowerthresh.png |
| 83985 | | > supersample 8 transparentBackground true height 2500 |
| 83986 | | |
| 83987 | | > lighting simple |
| 83988 | | |
| 83989 | | > lighting shadows false |
| 83990 | | |
| 83991 | | > save leaf_modelfit_bottom_job073_simple_silwid1_5_T50_lowerthresh.png |
| 83992 | | > supersample 8 transparentBackground true height 2500 |
| 83993 | | |
| 83994 | | > lighting full |
| 83995 | | |
| 83996 | | > lighting shadows false |
| 83997 | | |
| 83998 | | > save |
| 83999 | | > leaf_modelfit_bottom_job073_full_woutshadows_silwid1_5_T50_lowerthresh.png |
| 84000 | | > supersample 8 transparentBackground true height 2500 |
| 84001 | | |
| 84002 | | > view view3 |
| 84003 | | |
| 84004 | | > save |
| 84005 | | > leaf_modelfit_side_job073_full_woutshadows_silwid1_5_T50_lowerthresh.png |
| 84006 | | > supersample 8 transparentBackground true height 2500 |
| 84007 | | |
| 84008 | | > lighting gentle |
| 84009 | | |
| 84010 | | > save leaf_modelfit_side_job073_gentle_silwid1_5_T50_lowerthresh.png |
| 84011 | | > supersample 8 transparentBackground true height 2500 |
| 84012 | | |
| 84013 | | > lighting simple |
| 84014 | | |
| 84015 | | > save leaf_modelfit_side_job073_simple_silwid1_5_T50_lowerthresh.png |
| 84016 | | > supersample 8 transparentBackground true height 2500 |
| 84017 | | |
| 84018 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 84019 | | > paper/Chimera sessions/20241212_chimera_for_figures.cxs" |
| 84020 | | |
| 84021 | | ——— End of log from Thu Dec 12 11:04:26 2024 ——— |
| 84022 | | |
| 84023 | | opened ChimeraX session |
| 84024 | | |
| 84025 | | > color #5 silver models |
| 84026 | | |
| 84027 | | > color #5 #c0c0c052 models |
| 84028 | | |
| 84029 | | > color #5 #c0c0c059 models |
| 84030 | | |
| 84031 | | > view view1 |
| 84032 | | |
| 84033 | | > view view2 |
| 84034 | | |
| 84035 | | > view view3 |
| 84036 | | |
| 84037 | | > view name view19 |
| 84038 | | |
| 84039 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 84040 | | > paper/Chimera sessions/20241215_chimera_for_figures.cxs" |
| 84041 | | |
| 84042 | | > set silhouetteWidth 1.5 |
| 84043 | | |
| 84044 | | > view view19 |
| 84045 | | |
| 84046 | | > lighting soft |
| 84047 | | |
| 84048 | | > view view19 |
| 84049 | | |
| 84050 | | > hide #!5 models |
| 84051 | | |
| 84052 | | > color #1 #ffffff82 models |
| 84053 | | |
| 84054 | | > show #!1 models |
| 84055 | | |
| 84056 | | > volume #1 level 0.0066 |
| 84057 | | |
| 84058 | | > color #1 silver models |
| 84059 | | |
| 84060 | | > color #1 #c0c0c091 models |
| 84061 | | |
| 84062 | | > color #1 #c0c0c058 models |
| 84063 | | |
| 84064 | | > color #1 #c0c0c05c models |
| 84065 | | |
| 84066 | | > color #1 #c0c0c05b models |
| 84067 | | |
| 84068 | | > color #1 #c0c0c059 models |
| 84069 | | |
| 84070 | | > hide #!1 models |
| 84071 | | |
| 84072 | | > show #!1 models |
| 84073 | | |
| 84074 | | > hide #!1 models |
| 84075 | | |
| 84076 | | > show #!1 models |
| 84077 | | |
| 84078 | | > hide #!1 models |
| 84079 | | |
| 84080 | | > show #!2 models |
| 84081 | | |
| 84082 | | > hide #!2 models |
| 84083 | | |
| 84084 | | > show #!3 models |
| 84085 | | |
| 84086 | | > hide #!3 models |
| 84087 | | |
| 84088 | | > show #!4 models |
| 84089 | | |
| 84090 | | > hide #!4 models |
| 84091 | | |
| 84092 | | > show #!5 models |
| 84093 | | |
| 84094 | | > hide #!5 models |
| 84095 | | |
| 84096 | | > show #!6 models |
| 84097 | | |
| 84098 | | > volume #6 level 0.0054 |
| 84099 | | |
| 84100 | | > color #6 silver models |
| 84101 | | |
| 84102 | | > color #6 #c0c0c04f models |
| 84103 | | |
| 84104 | | > color #6 #c0c0c05a models |
| 84105 | | |
| 84106 | | > color #6 #c0c0c059 models |
| 84107 | | |
| 84108 | | > hide #!6 models |
| 84109 | | |
| 84110 | | > show #!6 models |
| 84111 | | |
| 84112 | | > hide #!6 models |
| 84113 | | |
| 84114 | | > show #!7 models |
| 84115 | | |
| 84116 | | > color #7 silver models |
| 84117 | | |
| 84118 | | > color #7 #c0c0c0b2 models |
| 84119 | | |
| 84120 | | > color #7 #c0c0c080 models |
| 84121 | | |
| 84122 | | > color #7 #c0c0c05a models |
| 84123 | | |
| 84124 | | > color #7 #c0c0c059 models |
| 84125 | | |
| 84126 | | > hide #!7 models |
| 84127 | | |
| 84128 | | > show #!8 models |
| 84129 | | |
| 84130 | | > color #8 silver models |
| 84131 | | |
| 84132 | | > color #8 #c0c0c058 models |
| 84133 | | |
| 84134 | | > color #8 #c0c0c059 models |
| 84135 | | |
| 84136 | | > hide #!8 models |
| 84137 | | |
| 84138 | | > show #!9 models |
| 84139 | | |
| 84140 | | > hide #!9 models |
| 84141 | | |
| 84142 | | > show #!10 models |
| 84143 | | |
| 84144 | | > hide #!10 models |
| 84145 | | |
| 84146 | | > show #!9 models |
| 84147 | | |
| 84148 | | > show #!5 models |
| 84149 | | |
| 84150 | | > hide #!5 models |
| 84151 | | |
| 84152 | | > hide #!9 models |
| 84153 | | |
| 84154 | | > hide #!30 models |
| 84155 | | |
| 84156 | | > view view19 |
| 84157 | | |
| 84158 | | > show #!5 models |
| 84159 | | |
| 84160 | | > show #!30 models |
| 84161 | | |
| 84162 | | > turn x -1 90 |
| 84163 | | |
| 84164 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 84165 | | QTBUG which explains how to reproduce. |
| 84166 | | |
| 84167 | | > view view3 |
| 84168 | | |
| 84169 | | [Repeated 2 time(s)] |
| 84170 | | |
| 84171 | | > view view4 |
| 84172 | | |
| 84173 | | > view view3 |
| 84174 | | |
| 84175 | | > view view4 |
| 84176 | | |
| 84177 | | > view view18 |
| 84178 | | |
| 84179 | | > hide #!30 models |
| 84180 | | |
| 84181 | | > show #!30 models |
| 84182 | | |
| 84183 | | > view view3 |
| 84184 | | |
| 84185 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 84186 | | > paper/Figures/2024_Dec/Figure1_round2/leaf_modelfit_magnesium_side_job073_soft_silwid1_5_T65_view3.png" |
| 84187 | | > width 1088 height 850 supersample 3 transparentBackground true |
| 84188 | | |
| 84189 | | > view view4 |
| 84190 | | |
| 84191 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 84192 | | > paper/Figures/2024_Dec/Figure1_round2/leaf_modelfit_magnesium_bottom_job073_soft_silwid1_5_T65_view4.png" |
| 84193 | | > width 1088 height 850 supersample 3 transparentBackground true |
| 84194 | | |
| 84195 | | > ui tool show "Side View" |
| 84196 | | |
| 84197 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 84198 | | > paper/Figures/2024_Dec/Figure1_round2/leaf_modelfit_magnesium_bottom_job073_soft_silwid1_5_T65_view4_memremoved.png" |
| 84199 | | > width 1088 height 850 supersample 3 |
| 84200 | | |
| 84201 | | > view view18 |
| 84202 | | |
| 84203 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 84204 | | > paper/Figures/2024_Dec/Figure1_round2/leaf_modelfit_magnesium_top_job073_soft_silwid1_5_T65_view18.png" |
| 84205 | | > width 1088 height 850 supersample 3 transparentBackground true |
| 84206 | | |
| 84207 | | > view view4 |
| 84208 | | |
| 84209 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 84210 | | > paper/Figures/2024_Dec/Figure1_round2/leaf_modelfit_magnesium_bottom_job073_soft_silwid1_5_T65_view4_memremoved.png" |
| 84211 | | > width 1088 height 850 supersample 3 transparentBackground true |
| 84212 | | |
| 84213 | | > hide #!30 models |
| 84214 | | |
| 84215 | | > hide #!5 models |
| 84216 | | |
| 84217 | | > show #!9 models |
| 84218 | | |
| 84219 | | > set silhouetteWidth 5 |
| 84220 | | |
| 84221 | | > show #!30 models |
| 84222 | | |
| 84223 | | > hide #!30 models |
| 84224 | | |
| 84225 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 84226 | | > paper/Figures/2024_Dec/Figure1_round2/leaf_outlines/leaf_outline_magnesium_bottom_job073_gaussian_silwid5_T100_view4_memremoved.png" |
| 84227 | | > width 1088 height 850 supersample 3 transparentBackground true |
| 84228 | | |
| 84229 | | > view view3 |
| 84230 | | |
| 84231 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 84232 | | > paper/Figures/2024_Dec/Figure1_round2/leaf_outlines/leaf_outline_magnesium_side_job073_gaussian_silwid5_T100_view3.png" |
| 84233 | | > width 1088 height 850 supersample 3 transparentBackground true |
| 84234 | | |
| 84235 | | > view view18 |
| 84236 | | |
| 84237 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 84238 | | > paper/Figures/2024_Dec/Figure1_round2/leaf_outlines/leaf_outline_top_job073_gaussian_silwid5_T100_view18.png" |
| 84239 | | > width 1088 height 850 supersample 3 transparentBackground true |
| 84240 | | |
| 84241 | | > view view1 |
| 84242 | | |
| 84243 | | > hide #!9 models |
| 84244 | | |
| 84245 | | > show #!12 models |
| 84246 | | |
| 84247 | | > color #12 #ffffff5a models |
| 84248 | | |
| 84249 | | > color #12 #ffffff59 models |
| 84250 | | |
| 84251 | | > view view2 |
| 84252 | | |
| 84253 | | > turn x 1 90 |
| 84254 | | |
| 84255 | | [Repeated 2 time(s)] |
| 84256 | | |
| 84257 | | > view name view20 |
| 84258 | | |
| 84259 | | > view name view21 |
| 84260 | | |
| 84261 | | > view name view22 |
| 84262 | | |
| 84263 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 84264 | | > paper/Figures/2024_Dec/Figure1_round2/triad_outlines/triad_outline_bottom_job020_gaussian_silwid5_T100_view22_memremoved.png" |
| 84265 | | > width 1088 height 850 supersample 3 transparentBackground true |
| 84266 | | |
| 84267 | | > view view21 |
| 84268 | | |
| 84269 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 84270 | | > paper/Figures/2024_Dec/Figure1_round2/triad_outlines/triad_outline_bottom_job020_gaussian_silwid5_T100_view21_onemem.png" |
| 84271 | | > width 1088 height 850 supersample 3 transparentBackground true |
| 84272 | | |
| 84273 | | > view view20 |
| 84274 | | |
| 84275 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 84276 | | > paper/Figures/2024_Dec/Figure1_round2/triad_outlines/triad_outline_bottom_job020_gaussian_silwid5_T100_view20_withmem.png" |
| 84277 | | > width 1088 height 850 supersample 3 transparentBackground true |
| 84278 | | |
| 84279 | | > view view1 |
| 84280 | | |
| 84281 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 84282 | | > paper/Figures/2024_Dec/Figure1_round2/triad_outlines/triad_outline_top_job020_gaussian_silwid5_T100_view1.png" |
| 84283 | | > width 1088 height 850 supersample 3 transparentBackground true |
| 84284 | | |
| 84285 | | > view view2 |
| 84286 | | |
| 84287 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 84288 | | > paper/Figures/2024_Dec/Figure1_round2/triad_outlines/triad_outline_side_job020_gaussian_silwid5_T100_view2.png" |
| 84289 | | > width 1088 height 850 supersample 3 transparentBackground true |
| 84290 | | |
| 84291 | | > set silhouetteWidth 1.5 |
| 84292 | | |
| 84293 | | > show #!30 models |
| 84294 | | |
| 84295 | | > view view1 |
| 84296 | | |
| 84297 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 84298 | | > paper/Figures/2024_Dec/Figure1_round2/soft_lighting/triad_modelfit_snow_top_job020_soft_silwid1_5_T65_view1.png" |
| 84299 | | > width 1088 height 850 supersample 3 transparentBackground true |
| 84300 | | |
| 84301 | | > view view2 |
| 84302 | | |
| 84303 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 84304 | | > paper/Figures/2024_Dec/Figure1_round2/soft_lighting/triad_modelfit_snow_side_job020_soft_silwid1_5_T65_view2.png" |
| 84305 | | > width 1088 height 850 supersample 3 transparentBackground true |
| 84306 | | |
| 84307 | | > view view20 |
| 84308 | | |
| 84309 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 84310 | | > paper/Figures/2024_Dec/Figure1_round2/soft_lighting/triad_modelfit_snow_bottom_job020_soft_silwid1_5_T65_view20_withmem.png" |
| 84311 | | > width 1088 height 850 supersample 3 transparentBackground true |
| 84312 | | |
| 84313 | | > view view21 |
| 84314 | | |
| 84315 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 84316 | | > paper/Figures/2024_Dec/Figure1_round2/soft_lighting/triad_modelfit_snow_bottom_job020_soft_silwid1_5_T65_view21_onemem.png" |
| 84317 | | > width 1088 height 850 supersample 3 transparentBackground true |
| 84318 | | |
| 84319 | | > view view22 |
| 84320 | | |
| 84321 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 84322 | | > paper/Figures/2024_Dec/Figure1_round2/soft_lighting/triad_modelfit_snow_bottom_job020_soft_silwid1_5_T65_view22_memremoved.png" |
| 84323 | | > width 1088 height 850 supersample 3 transparentBackground true |
| 84324 | | |
| 84325 | | > view view21 |
| 84326 | | |
| 84327 | | [Repeated 1 time(s)] |
| 84328 | | |
| 84329 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 84330 | | > paper/Chimera sessions/20241215_chimera_for_figures.cxs" |
| 84331 | | |
| 84332 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 84333 | | > paper/Chimera sessions/20241215_chimera_for_figures_v2.cxs" |
| 84334 | | |
| 84335 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 84336 | | > paper/Chimera sessions/20241215_chimera_for_figures_v3.cxs" |
| 84337 | | |
| 84338 | | > view view5 |
| 84339 | | |
| 84340 | | > hide #!12 models |
| 84341 | | |
| 84342 | | > show #!5 models |
| 84343 | | |
| 84344 | | > view view5 |
| 84345 | | |
| 84346 | | [Repeated 1 time(s)] |
| 84347 | | |
| 84348 | | > view view3 |
| 84349 | | |
| 84350 | | > view view5 |
| 84351 | | |
| 84352 | | > view name view5 |
| 84353 | | |
| 84354 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 84355 | | > paper/Figures/2024_Dec/Figure2/Golph_coatomer_interactions_magnesium_soft_T65.png" |
| 84356 | | > width 1181 height 808 supersample 3 transparentBackground true |
| 84357 | | |
| 84358 | | > view view6 |
| 84359 | | |
| 84360 | | > view view5 |
| 84361 | | |
| 84362 | | > view name view6 |
| 84363 | | |
| 84364 | | > view name view7 |
| 84365 | | |
| 84366 | | > view view6 |
| 84367 | | |
| 84368 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 84369 | | > paper/Figures/2024_Dec/Figure2/Golph_coatomer_interactions_magnesium_soft_T65_nobkgd.png" |
| 84370 | | > width 1181 height 808 supersample 3 transparentBackground true |
| 84371 | | |
| 84372 | | > view view7 |
| 84373 | | |
| 84374 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 84375 | | > paper/Figures/2024_Dec/Figure2/Golph_coatomer_interactions_magnesium_soft_T65_somebkgd.png" |
| 84376 | | > width 1181 height 808 supersample 3 transparentBackground true |
| 84377 | | |
| 84378 | | > volume #5 level 0.0055 |
| 84379 | | |
| 84380 | | > volume #5 level 0.006 |
| 84381 | | |
| 84382 | | > volume #5 level 0.0062 |
| 84383 | | |
| 84384 | | > volume #5 level 0.0055 |
| 84385 | | |
| 84386 | | > volume #5 level 0.0053 |
| 84387 | | |
| 84388 | | > view view8 |
| 84389 | | |
| 84390 | | > view view5 |
| 84391 | | |
| 84392 | | > view view6 |
| 84393 | | |
| 84394 | | > view view7 |
| 84395 | | |
| 84396 | | > view view8 |
| 84397 | | |
| 84398 | | > select ~sel & ##selected |
| 84399 | | |
| 84400 | | Nothing selected |
| 84401 | | |
| 84402 | | > view view9 |
| 84403 | | |
| 84404 | | > view view10 |
| 84405 | | |
| 84406 | | > view view11 |
| 84407 | | |
| 84408 | | > view view12 |
| 84409 | | |
| 84410 | | > view view13 |
| 84411 | | |
| 84412 | | > view view14 |
| 84413 | | |
| 84414 | | > view view15 |
| 84415 | | |
| 84416 | | > view view16 |
| 84417 | | |
| 84418 | | > view view17 |
| 84419 | | |
| 84420 | | > view view18 |
| 84421 | | |
| 84422 | | > view view19 |
| 84423 | | |
| 84424 | | > view view20 |
| 84425 | | |
| 84426 | | > view view21 |
| 84427 | | |
| 84428 | | > view view22 |
| 84429 | | |
| 84430 | | > view view23 |
| 84431 | | |
| 84432 | | Expected an objects specifier or a view name or a keyword |
| 84433 | | |
| 84434 | | > view view8 |
| 84435 | | |
| 84436 | | > view view7 |
| 84437 | | |
| 84438 | | > show #15 models |
| 84439 | | |
| 84440 | | > show #16 models |
| 84441 | | |
| 84442 | | > hide #16 models |
| 84443 | | |
| 84444 | | > show #17 models |
| 84445 | | |
| 84446 | | > hide #17 models |
| 84447 | | |
| 84448 | | > show #21 models |
| 84449 | | |
| 84450 | | > hide #21 models |
| 84451 | | |
| 84452 | | > show #21 models |
| 84453 | | |
| 84454 | | > hide #!30 models |
| 84455 | | |
| 84456 | | > show #!30 models |
| 84457 | | |
| 84458 | | > hide #!30 models |
| 84459 | | |
| 84460 | | > show #!30 models |
| 84461 | | |
| 84462 | | > hide #!30 models |
| 84463 | | |
| 84464 | | > hide #21 models |
| 84465 | | |
| 84466 | | > show #21 models |
| 84467 | | |
| 84468 | | > show #!30 models |
| 84469 | | |
| 84470 | | > hide #30/q |
| 84471 | | |
| 84472 | | > hide #30.1 models |
| 84473 | | |
| 84474 | | > show #30.1 models |
| 84475 | | |
| 84476 | | > show cartoons #30/q |
| 84477 | | |
| 84478 | | Expected ',' or a keyword |
| 84479 | | |
| 84480 | | > show #30/q |
| 84481 | | |
| 84482 | | > hide #15,21#!30 atoms |
| 84483 | | |
| 84484 | | > show #15,21#!30 cartoons |
| 84485 | | |
| 84486 | | > show #30/q cartoons |
| 84487 | | |
| 84488 | | > hide #21 models |
| 84489 | | |
| 84490 | | > show #21 models |
| 84491 | | |
| 84492 | | > hide #21 models |
| 84493 | | |
| 84494 | | > show #21 models |
| 84495 | | |
| 84496 | | > hide #21 models |
| 84497 | | |
| 84498 | | > select #30/Q |
| 84499 | | |
| 84500 | | 1971 atoms, 2002 bonds, 244 residues, 1 model selected |
| 84501 | | |
| 84502 | | > hide sel cartoons |
| 84503 | | |
| 84504 | | > show #20 models |
| 84505 | | |
| 84506 | | > hide #20 models |
| 84507 | | |
| 84508 | | > show #20 models |
| 84509 | | |
| 84510 | | > hide #20 models |
| 84511 | | |
| 84512 | | > show #21 models |
| 84513 | | |
| 84514 | | > hide #15 models |
| 84515 | | |
| 84516 | | > show #15 models |
| 84517 | | |
| 84518 | | > hide #15 models |
| 84519 | | |
| 84520 | | > show #15 models |
| 84521 | | |
| 84522 | | > select add #15 |
| 84523 | | |
| 84524 | | 6734 atoms, 6882 bonds, 835 residues, 2 models selected |
| 84525 | | |
| 84526 | | > select subtract #15 |
| 84527 | | |
| 84528 | | 1971 atoms, 2002 bonds, 244 residues, 1 model selected |
| 84529 | | |
| 84530 | | > select add #15 |
| 84531 | | |
| 84532 | | 6734 atoms, 6882 bonds, 835 residues, 2 models selected |
| 84533 | | |
| 84534 | | > show sel cartoons |
| 84535 | | |
| 84536 | | > undo |
| 84537 | | |
| 84538 | | [Repeated 9 time(s)] |
| 84539 | | |
| 84540 | | > hide #20 models |
| 84541 | | |
| 84542 | | > hide #!5 models |
| 84543 | | |
| 84544 | | > select add #30 |
| 84545 | | |
| 84546 | | 34030 atoms, 34648 bonds, 4 pseudobonds, 4269 residues, 2 models selected |
| 84547 | | |
| 84548 | | > select subtract #30 |
| 84549 | | |
| 84550 | | Nothing selected |
| 84551 | | |
| 84552 | | > hide #!30 models |
| 84553 | | |
| 84554 | | > ui mousemode right select |
| 84555 | | |
| 84556 | | > select #15/D:136 |
| 84557 | | |
| 84558 | | 10 atoms, 10 bonds, 1 residue, 1 model selected |
| 84559 | | |
| 84560 | | > show sel cartoons |
| 84561 | | |
| 84562 | | > show sel atoms |
| 84563 | | |
| 84564 | | > select #15/D:137 |
| 84565 | | |
| 84566 | | 12 atoms, 12 bonds, 1 residue, 1 model selected |
| 84567 | | |
| 84568 | | > show sel atoms |
| 84569 | | |
| 84570 | | > select #15/D:136 |
| 84571 | | |
| 84572 | | 10 atoms, 10 bonds, 1 residue, 1 model selected |
| 84573 | | |
| 84574 | | > show sel atoms |
| 84575 | | |
| 84576 | | > select #15/D:135 |
| 84577 | | |
| 84578 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 84579 | | |
| 84580 | | > show sel atoms |
| 84581 | | |
| 84582 | | > select #15/D:137@O |
| 84583 | | |
| 84584 | | 1 atom, 1 residue, 1 model selected |
| 84585 | | |
| 84586 | | > hide sel atoms |
| 84587 | | |
| 84588 | | > select #15/D:137@C |
| 84589 | | |
| 84590 | | 1 atom, 1 residue, 1 model selected |
| 84591 | | |
| 84592 | | > hide sel atoms |
| 84593 | | |
| 84594 | | > select #15/D:136@C |
| 84595 | | |
| 84596 | | 1 atom, 1 residue, 1 model selected |
| 84597 | | |
| 84598 | | > hide sel atoms |
| 84599 | | |
| 84600 | | > select #15/D:136@O |
| 84601 | | |
| 84602 | | 1 atom, 1 residue, 1 model selected |
| 84603 | | |
| 84604 | | > hide sel atoms |
| 84605 | | |
| 84606 | | > select #15/D:136@N |
| 84607 | | |
| 84608 | | 1 atom, 1 residue, 1 model selected |
| 84609 | | |
| 84610 | | > hide sel atoms |
| 84611 | | |
| 84612 | | [Repeated 1 time(s)] |
| 84613 | | |
| 84614 | | > select #15/D:135@O |
| 84615 | | |
| 84616 | | 1 atom, 1 residue, 1 model selected |
| 84617 | | |
| 84618 | | > hide sel atoms |
| 84619 | | |
| 84620 | | > select #15/D:135@N |
| 84621 | | |
| 84622 | | 1 atom, 1 residue, 1 model selected |
| 84623 | | |
| 84624 | | > hide sel atoms |
| 84625 | | |
| 84626 | | [Repeated 1 time(s)] |
| 84627 | | |
| 84628 | | > select #15/D:135@C |
| 84629 | | |
| 84630 | | 1 atom, 1 residue, 1 model selected |
| 84631 | | |
| 84632 | | > hide sel atoms |
| 84633 | | |
| 84634 | | > view view7 |
| 84635 | | |
| 84636 | | > select add #15 |
| 84637 | | |
| 84638 | | 4763 atoms, 4880 bonds, 591 residues, 1 model selected |
| 84639 | | |
| 84640 | | > select subtract #15 |
| 84641 | | |
| 84642 | | Nothing selected |
| 84643 | | |
| 84644 | | > show #!5 models |
| 84645 | | |
| 84646 | | > show #!30 models |
| 84647 | | |
| 84648 | | > hide #30.1 models |
| 84649 | | |
| 84650 | | > show #21 models |
| 84651 | | |
| 84652 | | > hide #15 models |
| 84653 | | |
| 84654 | | > show #22 models |
| 84655 | | |
| 84656 | | > hide #22 models |
| 84657 | | |
| 84658 | | > hide #!5 models |
| 84659 | | |
| 84660 | | > hide #!30 models |
| 84661 | | |
| 84662 | | > select #21/A:200 |
| 84663 | | |
| 84664 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 84665 | | |
| 84666 | | > show sel atoms |
| 84667 | | |
| 84668 | | > select #21/A:191 |
| 84669 | | |
| 84670 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 84671 | | |
| 84672 | | > show sel atoms |
| 84673 | | |
| 84674 | | > select #21/A:189 |
| 84675 | | |
| 84676 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 84677 | | |
| 84678 | | > show sel atoms |
| 84679 | | |
| 84680 | | > select #21/A:191@O |
| 84681 | | |
| 84682 | | 1 atom, 1 residue, 1 model selected |
| 84683 | | |
| 84684 | | > hide sel atoms |
| 84685 | | |
| 84686 | | > select #21/A:191@N |
| 84687 | | |
| 84688 | | 1 atom, 1 residue, 1 model selected |
| 84689 | | |
| 84690 | | > hide sel atoms |
| 84691 | | |
| 84692 | | > select #21/A:200@N |
| 84693 | | |
| 84694 | | 1 atom, 1 residue, 1 model selected |
| 84695 | | |
| 84696 | | > hide sel atoms |
| 84697 | | |
| 84698 | | > select #21/A:200@O |
| 84699 | | |
| 84700 | | 1 atom, 1 residue, 1 model selected |
| 84701 | | |
| 84702 | | > hide sel atoms |
| 84703 | | |
| 84704 | | [Repeated 1 time(s)] |
| 84705 | | |
| 84706 | | > select #21/A:189@N |
| 84707 | | |
| 84708 | | 1 atom, 1 residue, 1 model selected |
| 84709 | | |
| 84710 | | > hide sel atoms |
| 84711 | | |
| 84712 | | > select #21/A:189@C |
| 84713 | | |
| 84714 | | 1 atom, 1 residue, 1 model selected |
| 84715 | | |
| 84716 | | > hide sel atoms |
| 84717 | | |
| 84718 | | > select #21/A:189@O |
| 84719 | | |
| 84720 | | 1 atom, 1 residue, 1 model selected |
| 84721 | | |
| 84722 | | > hide sel atoms |
| 84723 | | |
| 84724 | | > select add #21 |
| 84725 | | |
| 84726 | | 1971 atoms, 2002 bonds, 244 residues, 1 model selected |
| 84727 | | |
| 84728 | | > select subtract #21 |
| 84729 | | |
| 84730 | | Nothing selected |
| 84731 | | |
| 84732 | | > hide #21 models |
| 84733 | | |
| 84734 | | > show #20 models |
| 84735 | | |
| 84736 | | > hide #20 models |
| 84737 | | |
| 84738 | | > show #21 models |
| 84739 | | |
| 84740 | | > hide #21 models |
| 84741 | | |
| 84742 | | > show #22 models |
| 84743 | | |
| 84744 | | > hide #22 models |
| 84745 | | |
| 84746 | | > show #23 models |
| 84747 | | |
| 84748 | | > hide #23 models |
| 84749 | | |
| 84750 | | > show #!5 models |
| 84751 | | |
| 84752 | | > view view7 |
| 84753 | | |
| 84754 | | > show #!30 models |
| 84755 | | |
| 84756 | | > select #61/Q |
| 84757 | | |
| 84758 | | 1971 atoms, 2002 bonds, 244 residues, 1 model selected |
| 84759 | | |
| 84760 | | > show #!30 cartoons |
| 84761 | | |
| 84762 | | > turn x -1 90 |
| 84763 | | |
| 84764 | | > show #20 models |
| 84765 | | |
| 84766 | | > hide #20 models |
| 84767 | | |
| 84768 | | > show #20 models |
| 84769 | | |
| 84770 | | > view view5 |
| 84771 | | |
| 84772 | | > turn x -1 90 |
| 84773 | | |
| 84774 | | > view view5 |
| 84775 | | |
| 84776 | | > hide #20 models |
| 84777 | | |
| 84778 | | > show #20 models |
| 84779 | | |
| 84780 | | > view view5 |
| 84781 | | |
| 84782 | | > view name view8 |
| 84783 | | |
| 84784 | | > view name view9 |
| 84785 | | |
| 84786 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 84787 | | > paper/Figures/2024_Dec/Figure2/Golph_PI4P_binding_site_magnesium_soft_T65_sliced.png" |
| 84788 | | > width 1677 height 989 supersample 3 transparentBackground true |
| 84789 | | |
| 84790 | | > view name view8 |
| 84791 | | |
| 84792 | | > view name view9 |
| 84793 | | |
| 84794 | | > view name view8 |
| 84795 | | |
| 84796 | | > view view8 |
| 84797 | | |
| 84798 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 84799 | | > paper/Figures/2024_Dec/Figure2/Golph_PI4P_binding_site_magnesium_soft_T65_notsliced.png" |
| 84800 | | > width 1677 height 989 supersample 3 transparentBackground true |
| 84801 | | |
| 84802 | | > view view7 |
| 84803 | | |
| 84804 | | > select clear |
| 84805 | | |
| 84806 | | > view name view10 |
| 84807 | | |
| 84808 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 84809 | | > paper/Figures/2024_Dec/Figure2/Golph_PI4P_binding_site_magnesium_soft_T65_notsliced_tilt.png" |
| 84810 | | > width 1677 height 989 supersample 3 transparentBackground true |
| 84811 | | |
| 84812 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 84813 | | > paper/Figures/2024_Dec/Figure2/Golph_PI4P_binding_site_magnesium_soft_T65_notsliced_tilt_v2.png" |
| 84814 | | > width 1677 height 989 supersample 3 transparentBackground true |
| 84815 | | |
| 84816 | | > view name view11 |
| 84817 | | |
| 84818 | | > select #30/Q |
| 84819 | | |
| 84820 | | 1971 atoms, 2002 bonds, 244 residues, 1 model selected |
| 84821 | | |
| 84822 | | > hide sel cartoons |
| 84823 | | |
| 84824 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 84825 | | > paper/Figures/2024_Dec/Figure2/Golph_PI4P_binding_site_magnesium_soft_T65_notsliced_tilt_v2.png" |
| 84826 | | > width 1677 height 989 supersample 3 transparentBackground true |
| 84827 | | |
| 84828 | | [Repeated 1 time(s)] |
| 84829 | | |
| 84830 | | > view view8 |
| 84831 | | |
| 84832 | | > hide #20 models |
| 84833 | | |
| 84834 | | > show #20 models |
| 84835 | | |
| 84836 | | > hide #20 models |
| 84837 | | |
| 84838 | | > show #20 models |
| 84839 | | |
| 84840 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 84841 | | > paper/Figures/2024_Dec/Figure2/Golph_PI4P_binding_site_magnesium_soft_T65_notsliced_v2.png" |
| 84842 | | > width 1677 height 989 supersample 3 transparentBackground true |
| 84843 | | |
| 84844 | | > view view9 |
| 84845 | | |
| 84846 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 84847 | | > paper/Figures/2024_Dec/Figure2/Golph_PI4P_binding_site_magnesium_soft_T65_sliced_v2.png" |
| 84848 | | > width 1677 height 989 supersample 3 transparentBackground true |
| 84849 | | |
| 84850 | | > view view10 |
| 84851 | | |
| 84852 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 84853 | | > paper/Figures/2024_Dec/Figure2/Golph_PI4P_binding_site_magnesium_soft_T65_notsliced_tilt.png" |
| 84854 | | > width 1677 height 989 supersample 3 transparentBackground true |
| 84855 | | |
| 84856 | | > view view11 |
| 84857 | | |
| 84858 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 84859 | | > paper/Figures/2024_Dec/Figure2/Golph_PI4P_binding_site_magnesium_soft_T65_notsliced_tilt_v2.png" |
| 84860 | | > width 1677 height 989 supersample 3 transparentBackground true |
| 84861 | | |
| 84862 | | > hide #20 models |
| 84863 | | |
| 84864 | | > show #21 models |
| 84865 | | |
| 84866 | | > view view7 |
| 84867 | | |
| 84868 | | > show #22 models |
| 84869 | | |
| 84870 | | > hide #22 models |
| 84871 | | |
| 84872 | | > show #23 models |
| 84873 | | |
| 84874 | | > show #15 models |
| 84875 | | |
| 84876 | | > show #16 models |
| 84877 | | |
| 84878 | | > view view7 |
| 84879 | | |
| 84880 | | > view name view12 |
| 84881 | | |
| 84882 | | > view view11 |
| 84883 | | |
| 84884 | | > view name view13 |
| 84885 | | |
| 84886 | | [Repeated 3 time(s)] |
| 84887 | | |
| 84888 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 84889 | | > paper/Figures/2024_Dec/Figure2/alpha |
| 84890 | | > interactions/Golph_alpha_interactions_magnesium_soft_T65_sliced.png" width |
| 84891 | | > 1677 height 989 supersample 3 transparentBackground true |
| 84892 | | |
| 84893 | | > view view12 |
| 84894 | | |
| 84895 | | > view view11 |
| 84896 | | |
| 84897 | | > view view12 |
| 84898 | | |
| 84899 | | > view view13 |
| 84900 | | |
| 84901 | | > view view12 |
| 84902 | | |
| 84903 | | > view name view14 |
| 84904 | | |
| 84905 | | > view view13 |
| 84906 | | |
| 84907 | | > view view14 |
| 84908 | | |
| 84909 | | > view name view14 |
| 84910 | | |
| 84911 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 84912 | | > paper/Figures/2024_Dec/Figure2/alpha |
| 84913 | | > interactions/Golph_alpha_interactions_magnesium_soft_T65_sliced_v2.png" |
| 84914 | | > width 1677 height 989 supersample 3 transparentBackground true |
| 84915 | | |
| 84916 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 84917 | | > paper/Chimera sessions/20241216_chimera_for_figures.cxs" includeMaps true |
| 84918 | | |
| 84919 | | > view view11 |
| 84920 | | |
| 84921 | | > hide #21 models |
| 84922 | | |
| 84923 | | > hide #23 models |
| 84924 | | |
| 84925 | | > show #!54 models |
| 84926 | | |
| 84927 | | > hide #!54 models |
| 84928 | | |
| 84929 | | > select add #30 |
| 84930 | | |
| 84931 | | 34030 atoms, 34648 bonds, 4 pseudobonds, 4269 residues, 2 models selected |
| 84932 | | |
| 84933 | | > select subtract #30 |
| 84934 | | |
| 84935 | | Nothing selected |
| 84936 | | |
| 84937 | | > select add #30 |
| 84938 | | |
| 84939 | | 34030 atoms, 34648 bonds, 4 pseudobonds, 4269 residues, 2 models selected |
| 84940 | | |
| 84941 | | > select subtract #30 |
| 84942 | | |
| 84943 | | Nothing selected |
| 84944 | | |
| 84945 | | > select add #30 |
| 84946 | | |
| 84947 | | 34030 atoms, 34648 bonds, 4 pseudobonds, 4269 residues, 2 models selected |
| 84948 | | |
| 84949 | | > select subtract #30 |
| 84950 | | |
| 84951 | | Nothing selected |
| 84952 | | |
| 84953 | | > view view7 |
| 84954 | | |
| 84955 | | > hide #!5 models |
| 84956 | | |
| 84957 | | > select #30/A:2 |
| 84958 | | |
| 84959 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 84960 | | |
| 84961 | | > delete sel |
| 84962 | | |
| 84963 | | > select #30/A:3 |
| 84964 | | |
| 84965 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 84966 | | |
| 84967 | | > delete sel |
| 84968 | | |
| 84969 | | > select #30/A:4 |
| 84970 | | |
| 84971 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 84972 | | |
| 84973 | | > delete sel |
| 84974 | | |
| 84975 | | > select #30/A:6 |
| 84976 | | |
| 84977 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 84978 | | |
| 84979 | | > delete sel |
| 84980 | | |
| 84981 | | > select #30/A:7 |
| 84982 | | |
| 84983 | | 11 atoms, 10 bonds, 1 residue, 1 model selected |
| 84984 | | |
| 84985 | | > delete sel |
| 84986 | | |
| 84987 | | > select #30/A:8 |
| 84988 | | |
| 84989 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 84990 | | |
| 84991 | | > delete sel |
| 84992 | | |
| 84993 | | > select #30/A:9 |
| 84994 | | |
| 84995 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 84996 | | |
| 84997 | | > select #30/A:31 |
| 84998 | | |
| 84999 | | 4 atoms, 3 bonds, 1 residue, 1 model selected |
| 85000 | | |
| 85001 | | > delete sel |
| 85002 | | |
| 85003 | | > select #30/A:30 |
| 85004 | | |
| 85005 | | 4 atoms, 3 bonds, 1 residue, 1 model selected |
| 85006 | | |
| 85007 | | > delete sel |
| 85008 | | |
| 85009 | | > select #30/A:29 |
| 85010 | | |
| 85011 | | 5 atoms, 4 bonds, 1 residue, 1 model selected |
| 85012 | | |
| 85013 | | > delete sel |
| 85014 | | |
| 85015 | | > select #30/A:28 |
| 85016 | | |
| 85017 | | 5 atoms, 4 bonds, 1 residue, 1 model selected |
| 85018 | | |
| 85019 | | > delete sel |
| 85020 | | |
| 85021 | | > select #30/A:27 |
| 85022 | | |
| 85023 | | 11 atoms, 10 bonds, 1 residue, 1 model selected |
| 85024 | | |
| 85025 | | > delete sel |
| 85026 | | |
| 85027 | | > select #30/A:26 |
| 85028 | | |
| 85029 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 85030 | | |
| 85031 | | > delete sel |
| 85032 | | |
| 85033 | | > show #!5 models |
| 85034 | | |
| 85035 | | > view view5 |
| 85036 | | |
| 85037 | | > view view11 |
| 85038 | | |
| 85039 | | > select #30/Q |
| 85040 | | |
| 85041 | | 1971 atoms, 2002 bonds, 244 residues, 1 model selected |
| 85042 | | |
| 85043 | | > show sel cartoons |
| 85044 | | |
| 85045 | | > select add #30 |
| 85046 | | |
| 85047 | | 33945 atoms, 34561 bonds, 6 pseudobonds, 4257 residues, 2 models selected |
| 85048 | | |
| 85049 | | > select subtract #30 |
| 85050 | | |
| 85051 | | Nothing selected |
| 85052 | | |
| 85053 | | > view view12 |
| 85054 | | |
| 85055 | | > view view11 |
| 85056 | | |
| 85057 | | > hide #16 models |
| 85058 | | |
| 85059 | | > hide #15 models |
| 85060 | | |
| 85061 | | > select #30/A:9 |
| 85062 | | |
| 85063 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 85064 | | |
| 85065 | | > delete sel |
| 85066 | | |
| 85067 | | > undo |
| 85068 | | |
| 85069 | | Undo failed, probably because structures have been modified. |
| 85070 | | |
| 85071 | | > select #5 |
| 85072 | | |
| 85073 | | 4 models selected |
| 85074 | | |
| 85075 | | > show #!54 models |
| 85076 | | |
| 85077 | | > select #30/A |
| 85078 | | |
| 85079 | | 138 atoms, 135 bonds, 2 pseudobonds, 18 residues, 2 models selected |
| 85080 | | |
| 85081 | | > hide sel cartoons |
| 85082 | | |
| 85083 | | > select add #30 |
| 85084 | | |
| 85085 | | 33939 atoms, 34555 bonds, 6 pseudobonds, 4256 residues, 2 models selected |
| 85086 | | |
| 85087 | | > select subtract #30 |
| 85088 | | |
| 85089 | | Nothing selected |
| 85090 | | |
| 85091 | | > view view11 |
| 85092 | | |
| 85093 | | > view name view15 |
| 85094 | | |
| 85095 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 85096 | | > paper/Figures/2024_Dec/Figure2/beta |
| 85097 | | > interactions/Golph_beta_interactions_magnesium_soft_T65_sliced.png" width |
| 85098 | | > 1677 height 989 supersample 3 transparentBackground true |
| 85099 | | |
| 85100 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 85101 | | > paper/Chimera sessions/20241216_chimera_for_figures_v2.cxs" |
| 85102 | | |
| 85103 | | > view name view16 |
| 85104 | | |
| 85105 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 85106 | | > paper/Figures/2024_Dec/Figure2/beta |
| 85107 | | > interactions/Golph_beta_interactions_magnesium_soft_T65_sliced_v2.png" width |
| 85108 | | > 1677 height 989 supersample 3 transparentBackground true |
| 85109 | | |
| 85110 | | > view view11 |
| 85111 | | |
| 85112 | | > show #24 models |
| 85113 | | |
| 85114 | | > hide #24 models |
| 85115 | | |
| 85116 | | > show #24 models |
| 85117 | | |
| 85118 | | > hide #24 models |
| 85119 | | |
| 85120 | | > show #25 models |
| 85121 | | |
| 85122 | | > hide #25 models |
| 85123 | | |
| 85124 | | > show #25 models |
| 85125 | | |
| 85126 | | > hide #25 models |
| 85127 | | |
| 85128 | | > show #25 models |
| 85129 | | |
| 85130 | | > show #29 models |
| 85131 | | |
| 85132 | | > hide #29 models |
| 85133 | | |
| 85134 | | > show #18 models |
| 85135 | | |
| 85136 | | > hide #!5 models |
| 85137 | | |
| 85138 | | > select #30/Q:223 |
| 85139 | | |
| 85140 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 85141 | | |
| 85142 | | > hide sel atoms |
| 85143 | | |
| 85144 | | > select #25/A:223 |
| 85145 | | |
| 85146 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 85147 | | |
| 85148 | | > hide sel atoms |
| 85149 | | |
| 85150 | | > select #25/A:224 |
| 85151 | | |
| 85152 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 85153 | | |
| 85154 | | > hide sel atoms |
| 85155 | | |
| 85156 | | > select #30/Q:231 |
| 85157 | | |
| 85158 | | 11 atoms, 10 bonds, 1 residue, 1 model selected |
| 85159 | | |
| 85160 | | > show #29 models |
| 85161 | | |
| 85162 | | > hide #29 models |
| 85163 | | |
| 85164 | | > show #29 models |
| 85165 | | |
| 85166 | | > show #28 models |
| 85167 | | |
| 85168 | | > hide #28 models |
| 85169 | | |
| 85170 | | > show #28 models |
| 85171 | | |
| 85172 | | > select clear |
| 85173 | | |
| 85174 | | > select #30/O:72 |
| 85175 | | |
| 85176 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 85177 | | |
| 85178 | | > select #18/I:72@CA |
| 85179 | | |
| 85180 | | 1 atom, 1 residue, 1 model selected |
| 85181 | | |
| 85182 | | > select #18/I:72 |
| 85183 | | |
| 85184 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 85185 | | |
| 85186 | | > hide sel atoms |
| 85187 | | |
| 85188 | | > select #30/O:73 |
| 85189 | | |
| 85190 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 85191 | | |
| 85192 | | > select #18/I:74 |
| 85193 | | |
| 85194 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 85195 | | |
| 85196 | | > select clear |
| 85197 | | |
| 85198 | | > view view11 |
| 85199 | | |
| 85200 | | > show #!5 models |
| 85201 | | |
| 85202 | | > hide #!5 models |
| 85203 | | |
| 85204 | | > select #30/Q:225 |
| 85205 | | |
| 85206 | | 14 atoms, 15 bonds, 1 residue, 1 model selected |
| 85207 | | |
| 85208 | | > select #30/Q:225 |
| 85209 | | |
| 85210 | | 14 atoms, 15 bonds, 1 residue, 1 model selected |
| 85211 | | |
| 85212 | | > select #25/A:225 |
| 85213 | | |
| 85214 | | 14 atoms, 15 bonds, 1 residue, 1 model selected |
| 85215 | | |
| 85216 | | > hide sel cartoons |
| 85217 | | |
| 85218 | | > undo |
| 85219 | | |
| 85220 | | > select #25/A:225@CA |
| 85221 | | |
| 85222 | | 1 atom, 1 residue, 1 model selected |
| 85223 | | |
| 85224 | | > select #30/Q:225 |
| 85225 | | |
| 85226 | | 14 atoms, 15 bonds, 1 residue, 1 model selected |
| 85227 | | |
| 85228 | | > select #25/A:225 |
| 85229 | | |
| 85230 | | 14 atoms, 15 bonds, 1 residue, 1 model selected |
| 85231 | | |
| 85232 | | > hide sel atoms |
| 85233 | | |
| 85234 | | [Repeated 1 time(s)] |
| 85235 | | |
| 85236 | | > show sel atoms |
| 85237 | | |
| 85238 | | > undo |
| 85239 | | |
| 85240 | | [Repeated 2 time(s)] |
| 85241 | | |
| 85242 | | > select clear |
| 85243 | | |
| 85244 | | > show #!5 models |
| 85245 | | |
| 85246 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 85247 | | > paper/Figures/2024_Dec/Figure2/zeta |
| 85248 | | > interactions/Golph_zeta_interactions_magnesium_soft_T65.png" width 1677 |
| 85249 | | > height 989 supersample 3 transparentBackground true |
| 85250 | | |
| 85251 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 85252 | | > paper/Figures/2024_Dec/Figure2/zeta |
| 85253 | | > interactions/Golph_zeta_interactions_magnesium_soft_T65_v2.png" width 1677 |
| 85254 | | > height 989 supersample 3 transparentBackground true |
| 85255 | | |
| 85256 | | > view name view23 |
| 85257 | | |
| 85258 | | > view view15 |
| 85259 | | |
| 85260 | | > view view23 |
| 85261 | | |
| 85262 | | > view name view15 |
| 85263 | | |
| 85264 | | > view view11 |
| 85265 | | |
| 85266 | | > hide #18 models |
| 85267 | | |
| 85268 | | > hide #28 models |
| 85269 | | |
| 85270 | | > hide #29 models |
| 85271 | | |
| 85272 | | > show #19 models |
| 85273 | | |
| 85274 | | > combine #55 |
| 85275 | | |
| 85276 | | > hide #!5 models |
| 85277 | | |
| 85278 | | > hide #!30 models |
| 85279 | | |
| 85280 | | > hide #31 models |
| 85281 | | |
| 85282 | | > show #31 models |
| 85283 | | |
| 85284 | | > close #31 |
| 85285 | | |
| 85286 | | > combine #54 |
| 85287 | | |
| 85288 | | > hide #!54 models |
| 85289 | | |
| 85290 | | > show #!54 models |
| 85291 | | |
| 85292 | | > hide #!54 models |
| 85293 | | |
| 85294 | | > select add #31 |
| 85295 | | |
| 85296 | | 229 atoms, 228 bonds, 31 residues, 1 model selected |
| 85297 | | |
| 85298 | | > cartoon style width 2.5 thickness 0.6 |
| 85299 | | |
| 85300 | | > select subtract #31 |
| 85301 | | |
| 85302 | | Nothing selected |
| 85303 | | |
| 85304 | | > show #!54 models |
| 85305 | | |
| 85306 | | > hide #!54 models |
| 85307 | | |
| 85308 | | > show #!54 models |
| 85309 | | |
| 85310 | | > hide #!54 models |
| 85311 | | |
| 85312 | | > show #!54 models |
| 85313 | | |
| 85314 | | > hide #!54 models |
| 85315 | | |
| 85316 | | > select add #31 |
| 85317 | | |
| 85318 | | 229 atoms, 228 bonds, 31 residues, 1 model selected |
| 85319 | | |
| 85320 | | > cartoon style width 2.5 thickness 0.6 xsection oval modeHelix wrap sides 16 |
| 85321 | | |
| 85322 | | > select subtract #31 |
| 85323 | | |
| 85324 | | Nothing selected |
| 85325 | | |
| 85326 | | > select add #31 |
| 85327 | | |
| 85328 | | 229 atoms, 228 bonds, 31 residues, 1 model selected |
| 85329 | | |
| 85330 | | > hide #!31 models |
| 85331 | | |
| 85332 | | > show #!31 models |
| 85333 | | |
| 85334 | | > show #!54 models |
| 85335 | | |
| 85336 | | > hide #!54 models |
| 85337 | | |
| 85338 | | > show #!54 models |
| 85339 | | |
| 85340 | | > hide #!54 models |
| 85341 | | |
| 85342 | | > undo |
| 85343 | | |
| 85344 | | [Repeated 4 time(s)] |
| 85345 | | |
| 85346 | | > show #!54 models |
| 85347 | | |
| 85348 | | > show #!31 models |
| 85349 | | |
| 85350 | | > select subtract #31 |
| 85351 | | |
| 85352 | | Nothing selected |
| 85353 | | |
| 85354 | | > select add #31 |
| 85355 | | |
| 85356 | | 229 atoms, 228 bonds, 31 residues, 1 model selected |
| 85357 | | |
| 85358 | | > cartoon style width 2.5 thickness 0.6 |
| 85359 | | |
| 85360 | | > hide #!54 models |
| 85361 | | |
| 85362 | | > show #!54 models |
| 85363 | | |
| 85364 | | > hide #!54 models |
| 85365 | | |
| 85366 | | > show #!54 models |
| 85367 | | |
| 85368 | | > select subtract #31 |
| 85369 | | |
| 85370 | | Nothing selected |
| 85371 | | |
| 85372 | | > hide #!54 models |
| 85373 | | |
| 85374 | | > select #31/A:14 |
| 85375 | | |
| 85376 | | 11 atoms, 10 bonds, 1 residue, 1 model selected |
| 85377 | | |
| 85378 | | > show sel atoms |
| 85379 | | |
| 85380 | | > color sel byhetero |
| 85381 | | |
| 85382 | | > select #31/A:14@O |
| 85383 | | |
| 85384 | | 1 atom, 1 residue, 1 model selected |
| 85385 | | |
| 85386 | | > hide sel atoms |
| 85387 | | |
| 85388 | | > select #31/A:14@C |
| 85389 | | |
| 85390 | | 1 atom, 1 residue, 1 model selected |
| 85391 | | |
| 85392 | | > hide sel atoms |
| 85393 | | |
| 85394 | | > select clear |
| 85395 | | |
| 85396 | | [Repeated 4 time(s)] |
| 85397 | | |
| 85398 | | > select #31/A:14@N |
| 85399 | | |
| 85400 | | 1 atom, 1 residue, 1 model selected |
| 85401 | | |
| 85402 | | > hide sel atoms |
| 85403 | | |
| 85404 | | > show #!5 models |
| 85405 | | |
| 85406 | | > select clear |
| 85407 | | |
| 85408 | | > show #!54 models |
| 85409 | | |
| 85410 | | > show #!30 models |
| 85411 | | |
| 85412 | | > view view11 |
| 85413 | | |
| 85414 | | > view name view24 |
| 85415 | | |
| 85416 | | > view name view25 |
| 85417 | | |
| 85418 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 85419 | | > paper/Figures/2024_Dec/Figure2/gamma |
| 85420 | | > interaction/Golph_gamma_interactions_magnesium_soft_T65_v2.png" width 1677 |
| 85421 | | > height 989 supersample 3 transparentBackground true |
| 85422 | | |
| 85423 | | > view view24 |
| 85424 | | |
| 85425 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 85426 | | > paper/Figures/2024_Dec/Figure2/gamma |
| 85427 | | > interaction/Golph_gamma_interactions_magnesium_soft_T65.png" width 1677 |
| 85428 | | > height 989 supersample 3 transparentBackground true |
| 85429 | | |
| 85430 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 85431 | | > paper/Chimera sessions/20241216_chimera_for_figures_v3.cxs" |
| 85432 | | |
| 85433 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 85434 | | > paper/Chimera sessions/20241216_chimera_for_figures_v4.cxs" |
| 85435 | | |
| 85436 | | Unsupported scale factor (0.000000) detected on Display0 |
| 85437 | | |
| 85438 | | [Repeated 7 time(s)] |
| 85439 | | |
| 85440 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 85441 | | QTBUG which explains how to reproduce. |
| 85442 | | |
| 85443 | | > view view14 |
| 85444 | | |
| 85445 | | > show #15 models |
| 85446 | | |
| 85447 | | > hide #15 models |
| 85448 | | |
| 85449 | | > view view11 |
| 85450 | | |
| 85451 | | > show #20 models |
| 85452 | | |
| 85453 | | > hide #!5 models |
| 85454 | | |
| 85455 | | > view view23 |
| 85456 | | |
| 85457 | | > hide #20 models |
| 85458 | | |
| 85459 | | > show #18 models |
| 85460 | | |
| 85461 | | > show #29 models |
| 85462 | | |
| 85463 | | > show #28 models |
| 85464 | | |
| 85465 | | > view view16 |
| 85466 | | |
| 85467 | | > hide #!31 models |
| 85468 | | |
| 85469 | | > hide #29 models |
| 85470 | | |
| 85471 | | > hide #28 models |
| 85472 | | |
| 85473 | | > hide #25 models |
| 85474 | | |
| 85475 | | > hide #19 models |
| 85476 | | |
| 85477 | | > show #19 models |
| 85478 | | |
| 85479 | | > view view14 |
| 85480 | | |
| 85481 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 85482 | | > paper/Chimera sessions/20241216_chimera_for_figures_v5.cxs" |
| 85483 | | |
| 85484 | | > show #27 models |
| 85485 | | |
| 85486 | | > view view14 |
| 85487 | | |
| 85488 | | > show #!5 models |
| 85489 | | |
| 85490 | | > view view14 |
| 85491 | | |
| 85492 | | > select #30/Q |
| 85493 | | |
| 85494 | | 1971 atoms, 2002 bonds, 244 residues, 1 model selected |
| 85495 | | |
| 85496 | | > hide sel cartoons |
| 85497 | | |
| 85498 | | > select ~sel & ##selected |
| 85499 | | |
| 85500 | | 31968 atoms, 32553 bonds, 6 pseudobonds, 4012 residues, 2 models selected |
| 85501 | | |
| 85502 | | > select ~sel & ##selected |
| 85503 | | |
| 85504 | | 1971 atoms, 2002 bonds, 244 residues, 1 model selected |
| 85505 | | |
| 85506 | | > view name view26 |
| 85507 | | |
| 85508 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 85509 | | > paper/Chimera sessions/20241216_chimera_for_figures_v6.cxs" |
| 85510 | | |
| 85511 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 85512 | | > paper/Figures/2024_Dec/Figure3/Alpha_COP_mutations_zoomed_in.png" width 789 |
| 85513 | | > height 615 supersample 3 transparentBackground true |
| 85514 | | |
| 85515 | | > view view11 |
| 85516 | | |
| 85517 | | > view view12 |
| 85518 | | |
| 85519 | | > view view13 |
| 85520 | | |
| 85521 | | > view view12 |
| 85522 | | |
| 85523 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 85524 | | > paper/Figures/2024_Dec/Figure3/Alpha_COP_mutations_overview.png" width 789 |
| 85525 | | > height 615 supersample 3 transparentBackground true |
| 85526 | | |
| 85527 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 85528 | | > paper/Chimera sessions/20241216_chimera_for_figures_v6.cxs" |
| 85529 | | |
| 85530 | | > view view12 |
| 85531 | | |
| 85532 | | > view view3 |
| 85533 | | |
| 85534 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 85535 | | > paper/Figures/2024_Dec/Figure3/Alpha_COP_mutations_medium_zoomed.png" width |
| 85536 | | > 977 height 615 supersample 3 transparentBackground true |
| 85537 | | |
| 85538 | | > view view2 |
| 85539 | | |
| 85540 | | > hide #27 models |
| 85541 | | |
| 85542 | | > show #27 models |
| 85543 | | |
| 85544 | | > select add #30 |
| 85545 | | |
| 85546 | | 33939 atoms, 34555 bonds, 6 pseudobonds, 4256 residues, 2 models selected |
| 85547 | | |
| 85548 | | > select subtract #30 |
| 85549 | | |
| 85550 | | Nothing selected |
| 85551 | | |
| 85552 | | > hide #19 models |
| 85553 | | |
| 85554 | | > hide #18 models |
| 85555 | | |
| 85556 | | > hide #!5 models |
| 85557 | | |
| 85558 | | > show #!9 models |
| 85559 | | |
| 85560 | | > hide #!9 models |
| 85561 | | |
| 85562 | | > show #!12 models |
| 85563 | | |
| 85564 | | > hide #!12 models |
| 85565 | | |
| 85566 | | > show #!3 models |
| 85567 | | |
| 85568 | | > hide #!3 models |
| 85569 | | |
| 85570 | | > show #!12 models |
| 85571 | | |
| 85572 | | > hide #!12 models |
| 85573 | | |
| 85574 | | > view view22 |
| 85575 | | |
| 85576 | | > view view21 |
| 85577 | | |
| 85578 | | > view view20 |
| 85579 | | |
| 85580 | | > view view21 |
| 85581 | | |
| 85582 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 85583 | | QTBUG which explains how to reproduce. |
| 85584 | | |
| 85585 | | > view view4 |
| 85586 | | |
| 85587 | | > hide #27 models |
| 85588 | | |
| 85589 | | > hide #!30 models |
| 85590 | | |
| 85591 | | > show #!30 models |
| 85592 | | |
| 85593 | | > hide #!30 models |
| 85594 | | |
| 85595 | | > hide #!54 models |
| 85596 | | |
| 85597 | | > combine #55 |
| 85598 | | |
| 85599 | | > show #!5 models |
| 85600 | | |
| 85601 | | > show #!31 models |
| 85602 | | |
| 85603 | | > hide #!31 models |
| 85604 | | |
| 85605 | | > show #!31 models |
| 85606 | | |
| 85607 | | > hide #!31 models |
| 85608 | | |
| 85609 | | > hide #!5 models |
| 85610 | | |
| 85611 | | > select add #32 |
| 85612 | | |
| 85613 | | 1971 atoms, 2002 bonds, 244 residues, 1 model selected |
| 85614 | | |
| 85615 | | > coulombic sel |
| 85616 | | |
| 85617 | | Using Amber 20 recommended default charges and atom types for standard |
| 85618 | | residues |
| 85619 | | Coulombic values for copy of 20240711_copi_golph3_golph3_.cif_A SES surface |
| 85620 | | #32.1: minimum, -23.57, mean -1.11, maximum 10.20 |
| 85621 | | To also show corresponding color key, enter the above coulombic command and |
| 85622 | | add key true |
| 85623 | | |
| 85624 | | > undo |
| 85625 | | |
| 85626 | | > select subtract #32 |
| 85627 | | |
| 85628 | | 1 model selected |
| 85629 | | |
| 85630 | | > hide #!32 models |
| 85631 | | |
| 85632 | | > show #!31 models |
| 85633 | | |
| 85634 | | > hide #!31 models |
| 85635 | | |
| 85636 | | > show #!30 models |
| 85637 | | |
| 85638 | | > hide #!30 models |
| 85639 | | |
| 85640 | | > show #!32 models |
| 85641 | | |
| 85642 | | > coulombic #!32 |
| 85643 | | |
| 85644 | | Coulombic values for copy of 20240711_copi_golph3_golph3_.cif_A SES surface |
| 85645 | | #32.1: minimum, -23.57, mean -1.11, maximum 10.20 |
| 85646 | | To also show corresponding color key, enter the above coulombic command and |
| 85647 | | add key true |
| 85648 | | |
| 85649 | | > view view3 |
| 85650 | | |
| 85651 | | > show #!5 models |
| 85652 | | |
| 85653 | | > view view8 |
| 85654 | | |
| 85655 | | > show #!30 models |
| 85656 | | |
| 85657 | | > hide #!5 models |
| 85658 | | |
| 85659 | | > show #!5 models |
| 85660 | | |
| 85661 | | > hide #!5 models |
| 85662 | | |
| 85663 | | > show #!5 models |
| 85664 | | |
| 85665 | | > hide #!30 models |
| 85666 | | |
| 85667 | | > show #!30 models |
| 85668 | | |
| 85669 | | > hide #!32 models |
| 85670 | | |
| 85671 | | > show #24 models |
| 85672 | | |
| 85673 | | > hide #24 models |
| 85674 | | |
| 85675 | | > show #!32 models |
| 85676 | | |
| 85677 | | > hide #!30 models |
| 85678 | | |
| 85679 | | > view view4 |
| 85680 | | |
| 85681 | | > hide #!5 models |
| 85682 | | |
| 85683 | | > show #!5 models |
| 85684 | | |
| 85685 | | > turn x 1 90 |
| 85686 | | |
| 85687 | | > turn x -1 90 |
| 85688 | | |
| 85689 | | > turn x 1 90 |
| 85690 | | |
| 85691 | | > hide #!5 models |
| 85692 | | |
| 85693 | | > show #!5 models |
| 85694 | | |
| 85695 | | > hide #!5 models |
| 85696 | | |
| 85697 | | > coulombic #!32 |
| 85698 | | |
| 85699 | | Coulombic values for copy of 20240711_copi_golph3_golph3_.cif_A SES surface |
| 85700 | | #32.1: minimum, -23.57, mean -1.11, maximum 10.20 |
| 85701 | | To also show corresponding color key, enter the above coulombic command and |
| 85702 | | add key true |
| 85703 | | |
| 85704 | | > hide #!32 models |
| 85705 | | |
| 85706 | | > show #!32 models |
| 85707 | | |
| 85708 | | > coulombic #!32 |
| 85709 | | |
| 85710 | | Coulombic values for copy of 20240711_copi_golph3_golph3_.cif_A SES surface |
| 85711 | | #32.1: minimum, -23.57, mean -1.11, maximum 10.20 |
| 85712 | | To also show corresponding color key, enter the above coulombic command and |
| 85713 | | add key true |
| 85714 | | |
| 85715 | | > select add #32 |
| 85716 | | |
| 85717 | | 1971 atoms, 2002 bonds, 244 residues, 1 model selected |
| 85718 | | |
| 85719 | | > coulombic sel |
| 85720 | | |
| 85721 | | Coulombic values for copy of 20240711_copi_golph3_golph3_.cif_A SES surface |
| 85722 | | #32.1: minimum, -23.57, mean -1.11, maximum 10.20 |
| 85723 | | To also show corresponding color key, enter the above coulombic command and |
| 85724 | | add key true |
| 85725 | | |
| 85726 | | > mlp sel |
| 85727 | | |
| 85728 | | Map values for surface "copy of 20240711_copi_golph3_golph3_.cif_A SES |
| 85729 | | surface": minimum -26.44, mean -4.735, maximum 24.14 |
| 85730 | | To also show corresponding color key, enter the above mlp command and add key |
| 85731 | | true |
| 85732 | | |
| 85733 | | > coulombic sel |
| 85734 | | |
| 85735 | | Coulombic values for copy of 20240711_copi_golph3_golph3_.cif_A SES surface |
| 85736 | | #32.1: minimum, -23.57, mean -1.11, maximum 10.20 |
| 85737 | | To also show corresponding color key, enter the above coulombic command and |
| 85738 | | add key true |
| 85739 | | |
| 85740 | | > rainbow sel |
| 85741 | | |
| 85742 | | > coulombic sel |
| 85743 | | |
| 85744 | | Coulombic values for copy of 20240711_copi_golph3_golph3_.cif_A SES surface |
| 85745 | | #32.1: minimum, -23.57, mean -1.11, maximum 10.20 |
| 85746 | | To also show corresponding color key, enter the above coulombic command and |
| 85747 | | add key true |
| 85748 | | |
| 85749 | | > select subtract #32 |
| 85750 | | |
| 85751 | | 1 model selected |
| 85752 | | |
| 85753 | | > hide #!32 models |
| 85754 | | |
| 85755 | | > show #!32 models |
| 85756 | | |
| 85757 | | > hide #!32 models |
| 85758 | | |
| 85759 | | > show #!32 models |
| 85760 | | |
| 85761 | | > select add #32.1 |
| 85762 | | |
| 85763 | | 1971 atoms, 244 residues, 1 model selected |
| 85764 | | |
| 85765 | | > select subtract #32.1 |
| 85766 | | |
| 85767 | | 1 model selected |
| 85768 | | |
| 85769 | | > hide #32.1 models |
| 85770 | | |
| 85771 | | > show #32.1 models |
| 85772 | | |
| 85773 | | > view view3 |
| 85774 | | |
| 85775 | | > show #!5 models |
| 85776 | | |
| 85777 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 85778 | | > paper/Figures/2024_Dec/Figure4/leaf_withelectroGOLPH3_magnesium_T65.png" |
| 85779 | | > width 1091 height 740 supersample 3 transparentBackground true |
| 85780 | | |
| 85781 | | > hide #!5 models |
| 85782 | | |
| 85783 | | > show #!9 models |
| 85784 | | |
| 85785 | | > set silhouetteWidth 5 |
| 85786 | | |
| 85787 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 85788 | | > paper/Figures/2024_Dec/Figure4/leaf_withelectroGOLPH3_GF3_white_T100.png" |
| 85789 | | > width 1091 height 740 supersample 3 transparentBackground true |
| 85790 | | |
| 85791 | | > turn x -1 90 |
| 85792 | | |
| 85793 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 85794 | | > paper/Figures/2024_Dec/Figure4/leaf_withelectroGOLPH3_GF3_white_T100_bottom.png" |
| 85795 | | > width 1091 height 740 supersample 3 transparentBackground true |
| 85796 | | |
| 85797 | | > hide #!9 models |
| 85798 | | |
| 85799 | | > set silhouetteWidth 1.5 |
| 85800 | | |
| 85801 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 85802 | | > paper/Figures/2024_Dec/Figure4/electroGOLPH3_only_sameangle_bottom.png" |
| 85803 | | > width 1091 height 740 supersample 3 transparentBackground true |
| 85804 | | |
| 85805 | | > select #32/A:259@CD |
| 85806 | | |
| 85807 | | 1 atom, 1 residue, 1 model selected |
| 85808 | | |
| 85809 | | > ui mousemode right select |
| 85810 | | |
| 85811 | | > select #32/A:259@CG |
| 85812 | | |
| 85813 | | 1 atom, 1 residue, 1 model selected |
| 85814 | | |
| 85815 | | > select #32/A:259@OE1 |
| 85816 | | |
| 85817 | | 1 atom, 1 residue, 1 model selected |
| 85818 | | |
| 85819 | | > color sel yellow |
| 85820 | | |
| 85821 | | > select #32/A:258@OD2 |
| 85822 | | |
| 85823 | | 1 atom, 1 residue, 1 model selected |
| 85824 | | |
| 85825 | | > color sel yellow |
| 85826 | | |
| 85827 | | > select #32/A:262@CG |
| 85828 | | |
| 85829 | | 1 atom, 1 residue, 1 model selected |
| 85830 | | |
| 85831 | | > color sel yellow |
| 85832 | | |
| 85833 | | > select #32/A:250@CD |
| 85834 | | |
| 85835 | | 1 atom, 1 residue, 1 model selected |
| 85836 | | |
| 85837 | | > color sel yellow |
| 85838 | | |
| 85839 | | > select #32/A:247@OD2 |
| 85840 | | |
| 85841 | | 1 atom, 1 residue, 1 model selected |
| 85842 | | |
| 85843 | | > color sel yellow |
| 85844 | | |
| 85845 | | > select #32/A:159@OE1 |
| 85846 | | |
| 85847 | | 1 atom, 1 residue, 1 model selected |
| 85848 | | |
| 85849 | | > color sel yellow |
| 85850 | | |
| 85851 | | > select #32/A:154@CD |
| 85852 | | |
| 85853 | | 1 atom, 1 residue, 1 model selected |
| 85854 | | |
| 85855 | | > color sel yellow |
| 85856 | | |
| 85857 | | > select #32/A:83@OD2 |
| 85858 | | |
| 85859 | | 1 atom, 1 residue, 1 model selected |
| 85860 | | |
| 85861 | | > color sel yellow |
| 85862 | | |
| 85863 | | > select #32/A:277@CG |
| 85864 | | |
| 85865 | | 1 atom, 1 residue, 1 model selected |
| 85866 | | |
| 85867 | | > color sel yellow |
| 85868 | | |
| 85869 | | > select #32/A:275@CG |
| 85870 | | |
| 85871 | | 1 atom, 1 residue, 1 model selected |
| 85872 | | |
| 85873 | | > color sel yellow |
| 85874 | | |
| 85875 | | > view name view27 |
| 85876 | | |
| 85877 | | > select #32/A:273@CG |
| 85878 | | |
| 85879 | | 1 atom, 1 residue, 1 model selected |
| 85880 | | |
| 85881 | | > select up |
| 85882 | | |
| 85883 | | 8 atoms, 7 bonds, 1 residue, 2 models selected |
| 85884 | | |
| 85885 | | > select down |
| 85886 | | |
| 85887 | | 1 atom, 1 residue, 2 models selected |
| 85888 | | |
| 85889 | | > color sel yellow |
| 85890 | | |
| 85891 | | > hide #!32.1 models |
| 85892 | | |
| 85893 | | > select #32/A:279 |
| 85894 | | |
| 85895 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 85896 | | |
| 85897 | | > color sel yellow |
| 85898 | | |
| 85899 | | > select #32/A:73 |
| 85900 | | |
| 85901 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 85902 | | |
| 85903 | | > color sel yellow |
| 85904 | | |
| 85905 | | > select #32/A:75 |
| 85906 | | |
| 85907 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 85908 | | |
| 85909 | | > color sel yellow |
| 85910 | | |
| 85911 | | > show #32.1 models |
| 85912 | | |
| 85913 | | > view view27 |
| 85914 | | |
| 85915 | | > select clear |
| 85916 | | |
| 85917 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 85918 | | > paper/Figures/2024_Dec/Figure4/electroGOLPH3_only_sameangle_bottom_residues_yellow.png" |
| 85919 | | > width 1091 height 740 supersample 3 transparentBackground true |
| 85920 | | |
| 85921 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 85922 | | > paper/Chimera sessions/20241217_chimera_for_figures.cxs" |
| 85923 | | |
| 85924 | | > view view27 |
| 85925 | | |
| 85926 | | > hide #!32 models |
| 85927 | | |
| 85928 | | > rename #32 20240711_copi_golph3_golph3_electro_surface.cif |
| 85929 | | |
| 85930 | | > show #!5 models |
| 85931 | | |
| 85932 | | > view view3 |
| 85933 | | |
| 85934 | | [Repeated 1 time(s)] |
| 85935 | | |
| 85936 | | > rotate y 1 90 |
| 85937 | | |
| 85938 | | Unknown command: rotate y 1 90 |
| 85939 | | |
| 85940 | | > view view3 |
| 85941 | | |
| 85942 | | > turn y 1 90 |
| 85943 | | |
| 85944 | | [Repeated 2 time(s)] |
| 85945 | | |
| 85946 | | > view name view28 |
| 85947 | | |
| 85948 | | > show #!30 models |
| 85949 | | |
| 85950 | | > view view29 |
| 85951 | | |
| 85952 | | Expected an objects specifier or a view name or a keyword |
| 85953 | | |
| 85954 | | > view view28 |
| 85955 | | |
| 85956 | | > view name view29 |
| 85957 | | |
| 85958 | | > turn x -1 90 |
| 85959 | | |
| 85960 | | [Repeated 2 time(s)] |
| 85961 | | |
| 85962 | | > view name view30 |
| 85963 | | |
| 85964 | | > hide #!30 models |
| 85965 | | |
| 85966 | | > hide #!5 models |
| 85967 | | |
| 85968 | | > show #!56 models |
| 85969 | | |
| 85970 | | > color #56 silver models |
| 85971 | | |
| 85972 | | > color #56 #c0c0c05b models |
| 85973 | | |
| 85974 | | > color #56 #c0c0c059 models |
| 85975 | | |
| 85976 | | > color #56 #c0c0c05a models |
| 85977 | | |
| 85978 | | > color #56 #c0c0c059 models |
| 85979 | | |
| 85980 | | > volume #56 level 0.08879 |
| 85981 | | |
| 85982 | | > show #!57 models |
| 85983 | | |
| 85984 | | > view view29 |
| 85985 | | |
| 85986 | | > view view30 |
| 85987 | | |
| 85988 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 85989 | | > paper/Figures/2024_Dec/FigureS2/2017_leaf_map_magnesium_T65_with_2017_leaf_model.png" |
| 85990 | | > width 1091 height 740 supersample 3 transparentBackground true |
| 85991 | | |
| 85992 | | > hide #!56 models |
| 85993 | | |
| 85994 | | > hide #!57 models |
| 85995 | | |
| 85996 | | > show #!30 models |
| 85997 | | |
| 85998 | | > show #!5 models |
| 85999 | | |
| 86000 | | > show #!56 models |
| 86001 | | |
| 86002 | | > hide #!56 models |
| 86003 | | |
| 86004 | | > show #!56 models |
| 86005 | | |
| 86006 | | > hide #!56 models |
| 86007 | | |
| 86008 | | > show #!56 models |
| 86009 | | |
| 86010 | | > hide #!56 models |
| 86011 | | |
| 86012 | | > ui tool show "Fit in Map" |
| 86013 | | |
| 86014 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 86015 | | QTBUG which explains how to reproduce. |
| 86016 | | |
| 86017 | | [Repeated 1 time(s)] |
| 86018 | | |
| 86019 | | > fitmap #56 inMap #5 |
| 86020 | | |
| 86021 | | Fit map emd_3720_2017_leaf.map in map relion_locres_filtered_job073.mrc using |
| 86022 | | 124022 points |
| 86023 | | correlation = 0.7892, correlation about mean = 0.3595, overlap = 159.4 |
| 86024 | | steps = 48, shift = 0.0751, angle = 0.0666 degrees |
| 86025 | | |
| 86026 | | Position of emd_3720_2017_leaf.map (#56) relative to |
| 86027 | | relion_locres_filtered_job073.mrc (#5) coordinates: |
| 86028 | | Matrix rotation and translation |
| 86029 | | -0.53772036 0.84173230 -0.04841014 217.80500498 |
| 86030 | | -0.84300271 -0.53772736 0.01398957 404.51358870 |
| 86031 | | -0.01425598 0.04833235 0.99872957 145.23929345 |
| 86032 | | Axis 0.02037626 -0.02026435 -0.99958700 |
| 86033 | | Axis point 220.39818988 140.27140399 0.00000000 |
| 86034 | | Rotation angle (degrees) 122.57200405 |
| 86035 | | Shift along axis -148.93846123 |
| 86036 | | |
| 86037 | | |
| 86038 | | > show #!56 models |
| 86039 | | |
| 86040 | | > hide #!56 models |
| 86041 | | |
| 86042 | | > show #!56 models |
| 86043 | | |
| 86044 | | > hide #!56 models |
| 86045 | | |
| 86046 | | > fitmap #57 inMap #56 |
| 86047 | | |
| 86048 | | Fit molecule 5nzr_COPI_coat_leaf_2017.cif (#57) to map emd_3720_2017_leaf.map |
| 86049 | | (#56) using 18970 atoms |
| 86050 | | average map value = 0.2037, steps = 40 |
| 86051 | | shifted from previous position = 0.062 |
| 86052 | | rotated from previous position = 0.0695 degrees |
| 86053 | | atoms outside contour = 933, contour level = 0.088792 |
| 86054 | | |
| 86055 | | Position of 5nzr_COPI_coat_leaf_2017.cif (#57) relative to |
| 86056 | | emd_3720_2017_leaf.map (#56) coordinates: |
| 86057 | | Matrix rotation and translation |
| 86058 | | 0.99999978 0.00022390 0.00062571 -0.08166564 |
| 86059 | | -0.00022396 0.99999997 0.00009681 -0.00020564 |
| 86060 | | -0.00062569 -0.00009695 0.99999980 0.08227446 |
| 86061 | | Axis -0.14425754 0.93166940 -0.33343949 |
| 86062 | | Axis point 123.00827732 0.00000000 134.21373741 |
| 86063 | | Rotation angle (degrees) 0.03847904 |
| 86064 | | Shift along axis -0.01584425 |
| 86065 | | |
| 86066 | | |
| 86067 | | > show #!56 models |
| 86068 | | |
| 86069 | | > hide #!56 models |
| 86070 | | |
| 86071 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 86072 | | > paper/Figures/2024_Dec/FigureS2/COPI-GOLPH3_map_magnesium_T65_with_COPI- |
| 86073 | | > GOLPH3_leaf_model.png" width 1062 height 740 supersample 3 |
| 86074 | | > transparentBackground true |
| 86075 | | |
| 86076 | | > hide #!30 models |
| 86077 | | |
| 86078 | | > hide #!5 models |
| 86079 | | |
| 86080 | | > show #!57 models |
| 86081 | | |
| 86082 | | > show #!56 models |
| 86083 | | |
| 86084 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 86085 | | > paper/Figures/2024_Dec/FigureS2/2017_leaf_map_magnesium_T65_with_2017_leaf_model.png" |
| 86086 | | > width 1062 height 740 supersample 3 transparentBackground true |
| 86087 | | |
| 86088 | | > view vdw25 |
| 86089 | | |
| 86090 | | Expected an objects specifier or a view name or a keyword |
| 86091 | | |
| 86092 | | > view view25 |
| 86093 | | |
| 86094 | | > view view24 |
| 86095 | | |
| 86096 | | > view view25 |
| 86097 | | |
| 86098 | | > view view26 |
| 86099 | | |
| 86100 | | > show #55 models |
| 86101 | | |
| 86102 | | > hide #!56 models |
| 86103 | | |
| 86104 | | > hide #!57 models |
| 86105 | | |
| 86106 | | > view view27 |
| 86107 | | |
| 86108 | | > hide #55 models |
| 86109 | | |
| 86110 | | > show #!5 models |
| 86111 | | |
| 86112 | | > show #!30 models |
| 86113 | | |
| 86114 | | > show #!31 models |
| 86115 | | |
| 86116 | | > hide #!31 models |
| 86117 | | |
| 86118 | | > show #!54 models |
| 86119 | | |
| 86120 | | > show #55 models |
| 86121 | | |
| 86122 | | > view view3 |
| 86123 | | |
| 86124 | | > hide #!5 models |
| 86125 | | |
| 86126 | | > view view3 |
| 86127 | | |
| 86128 | | > show #!5 models |
| 86129 | | |
| 86130 | | > hide #55 models |
| 86131 | | |
| 86132 | | > hide #!54 models |
| 86133 | | |
| 86134 | | > select add #30 |
| 86135 | | |
| 86136 | | 33939 atoms, 34555 bonds, 6 pseudobonds, 4256 residues, 2 models selected |
| 86137 | | |
| 86138 | | > hide #!5 models |
| 86139 | | |
| 86140 | | > show sel cartoons |
| 86141 | | |
| 86142 | | > select subtract #30 |
| 86143 | | |
| 86144 | | Nothing selected |
| 86145 | | |
| 86146 | | > hide #!30 models |
| 86147 | | |
| 86148 | | > show #!30 models |
| 86149 | | |
| 86150 | | > combine #30 |
| 86151 | | |
| 86152 | | > rename #33 combined_model_COPI_GOLPH3_surface |
| 86153 | | |
| 86154 | | > hide #!30 models |
| 86155 | | |
| 86156 | | > show #!33 surfaces |
| 86157 | | |
| 86158 | | > show #!5 models |
| 86159 | | |
| 86160 | | > hide #!5 models |
| 86161 | | |
| 86162 | | > show #!5 models |
| 86163 | | |
| 86164 | | > hide #!5 models |
| 86165 | | |
| 86166 | | > view view3 |
| 86167 | | |
| 86168 | | > set silhouettes width 5 |
| 86169 | | |
| 86170 | | Invalid "silhouettes" argument: Expected true or false (or 1 or 0) |
| 86171 | | |
| 86172 | | > set silhouetteWidth 5 |
| 86173 | | |
| 86174 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 86175 | | > paper/Figures/2024_Dec/Figure5/COPI-GOLPH3_model_surfaces_silwidth5.png" |
| 86176 | | > width 1062 height 740 supersample 3 transparentBackground true |
| 86177 | | |
| 86178 | | > show #!5 models |
| 86179 | | |
| 86180 | | > hide #!5 models |
| 86181 | | |
| 86182 | | > show #!9 models |
| 86183 | | |
| 86184 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 86185 | | > paper/Figures/2024_Dec/Figure5/COPI- |
| 86186 | | > GOLPH3_model_surfaces_silwidth5_withjob073_GF3.png" width 1062 height 740 |
| 86187 | | > supersample 3 transparentBackground true |
| 86188 | | |
| 86189 | | > hide #!33 models |
| 86190 | | |
| 86191 | | > select #33/Q |
| 86192 | | |
| 86193 | | 1971 atoms, 2002 bonds, 244 residues, 1 model selected |
| 86194 | | |
| 86195 | | > show #!33 models |
| 86196 | | |
| 86197 | | > select #9 |
| 86198 | | |
| 86199 | | 2 models selected |
| 86200 | | |
| 86201 | | > select clear |
| 86202 | | |
| 86203 | | > split #33 chains |
| 86204 | | |
| 86205 | | Split combined_model_COPI_GOLPH3_surface (#33) into 17 models |
| 86206 | | Chain information for combined_model_COPI_GOLPH3_surface A #33.1 |
| 86207 | | --- |
| 86208 | | Chain | Description |
| 86209 | | A | No description available |
| 86210 | | |
| 86211 | | Chain information for combined_model_COPI_GOLPH3_surface B #33.2 |
| 86212 | | --- |
| 86213 | | Chain | Description |
| 86214 | | B | No description available |
| 86215 | | |
| 86216 | | Chain information for combined_model_COPI_GOLPH3_surface C #33.3 |
| 86217 | | --- |
| 86218 | | Chain | Description |
| 86219 | | C | No description available |
| 86220 | | |
| 86221 | | Chain information for combined_model_COPI_GOLPH3_surface D #33.4 |
| 86222 | | --- |
| 86223 | | Chain | Description |
| 86224 | | D | No description available |
| 86225 | | |
| 86226 | | Chain information for combined_model_COPI_GOLPH3_surface E #33.5 |
| 86227 | | --- |
| 86228 | | Chain | Description |
| 86229 | | E | No description available |
| 86230 | | |
| 86231 | | Chain information for combined_model_COPI_GOLPH3_surface F #33.6 |
| 86232 | | --- |
| 86233 | | Chain | Description |
| 86234 | | F | No description available |
| 86235 | | |
| 86236 | | Chain information for combined_model_COPI_GOLPH3_surface G #33.7 |
| 86237 | | --- |
| 86238 | | Chain | Description |
| 86239 | | G | No description available |
| 86240 | | |
| 86241 | | Chain information for combined_model_COPI_GOLPH3_surface H #33.8 |
| 86242 | | --- |
| 86243 | | Chain | Description |
| 86244 | | H | No description available |
| 86245 | | |
| 86246 | | Chain information for combined_model_COPI_GOLPH3_surface I #33.9 |
| 86247 | | --- |
| 86248 | | Chain | Description |
| 86249 | | I | No description available |
| 86250 | | |
| 86251 | | Chain information for combined_model_COPI_GOLPH3_surface J #33.10 |
| 86252 | | --- |
| 86253 | | Chain | Description |
| 86254 | | J | No description available |
| 86255 | | |
| 86256 | | Chain information for combined_model_COPI_GOLPH3_surface K #33.11 |
| 86257 | | --- |
| 86258 | | Chain | Description |
| 86259 | | K | No description available |
| 86260 | | |
| 86261 | | Chain information for combined_model_COPI_GOLPH3_surface L #33.12 |
| 86262 | | --- |
| 86263 | | Chain | Description |
| 86264 | | L | No description available |
| 86265 | | |
| 86266 | | Chain information for combined_model_COPI_GOLPH3_surface M #33.13 |
| 86267 | | --- |
| 86268 | | Chain | Description |
| 86269 | | M | No description available |
| 86270 | | |
| 86271 | | Chain information for combined_model_COPI_GOLPH3_surface N #33.14 |
| 86272 | | --- |
| 86273 | | Chain | Description |
| 86274 | | N | No description available |
| 86275 | | |
| 86276 | | Chain information for combined_model_COPI_GOLPH3_surface O #33.15 |
| 86277 | | --- |
| 86278 | | Chain | Description |
| 86279 | | O | No description available |
| 86280 | | |
| 86281 | | Chain information for combined_model_COPI_GOLPH3_surface P #33.16 |
| 86282 | | --- |
| 86283 | | Chain | Description |
| 86284 | | P | No description available |
| 86285 | | |
| 86286 | | Chain information for combined_model_COPI_GOLPH3_surface Q #33.17 |
| 86287 | | --- |
| 86288 | | Chain | Description |
| 86289 | | Q | No description available |
| 86290 | | |
| 86291 | | |
| 86292 | | > select add #33 |
| 86293 | | |
| 86294 | | 33939 atoms, 34555 bonds, 6 pseudobonds, 4256 residues, 23 models selected |
| 86295 | | |
| 86296 | | > show sel surfaces |
| 86297 | | |
| 86298 | | > select subtract #33 |
| 86299 | | |
| 86300 | | 17 models selected |
| 86301 | | |
| 86302 | | > hide #!33.16 models |
| 86303 | | |
| 86304 | | > hide #!33.15 models |
| 86305 | | |
| 86306 | | > hide #!33.14 models |
| 86307 | | |
| 86308 | | > hide #!33.13 models |
| 86309 | | |
| 86310 | | > hide #!33.12 models |
| 86311 | | |
| 86312 | | > hide #!33.11 models |
| 86313 | | |
| 86314 | | > hide #!33.10 models |
| 86315 | | |
| 86316 | | > hide #!33.9 models |
| 86317 | | |
| 86318 | | > hide #!33.8 models |
| 86319 | | |
| 86320 | | > hide #!33.7 models |
| 86321 | | |
| 86322 | | > hide #!33.6 models |
| 86323 | | |
| 86324 | | > show #!33.6 models |
| 86325 | | |
| 86326 | | > hide #!33.6 models |
| 86327 | | |
| 86328 | | > hide #!33.5 models |
| 86329 | | |
| 86330 | | > hide #!33.4 models |
| 86331 | | |
| 86332 | | > hide #!33.3 models |
| 86333 | | |
| 86334 | | > hide #!33.2 models |
| 86335 | | |
| 86336 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 86337 | | > paper/Figures/2024_Dec/Figure5/COPI- |
| 86338 | | > GOLPH3_model_surfaces_silwidth5_GOLPH3.png" width 1062 height 740 |
| 86339 | | > supersample 3 transparentBackground true |
| 86340 | | |
| 86341 | | > hide #!33.1 models |
| 86342 | | |
| 86343 | | > show #!33.2 models |
| 86344 | | |
| 86345 | | > hide #!33.17 models |
| 86346 | | |
| 86347 | | > show #!33.16 models |
| 86348 | | |
| 86349 | | > show #!33.3 models |
| 86350 | | |
| 86351 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 86352 | | > paper/Figures/2024_Dec/Figure5/COPI- |
| 86353 | | > GOLPH3_model_surfaces_silwidth5_Arf1.png" width 1062 height 740 supersample |
| 86354 | | > 3 transparentBackground true |
| 86355 | | |
| 86356 | | > hide #!33.2 models |
| 86357 | | |
| 86358 | | > hide #!33.3 models |
| 86359 | | |
| 86360 | | > hide #!33.16 models |
| 86361 | | |
| 86362 | | > show #!33.4 models |
| 86363 | | |
| 86364 | | > show #!33.5 models |
| 86365 | | |
| 86366 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 86367 | | > paper/Figures/2024_Dec/Figure5/COPI- |
| 86368 | | > GOLPH3_model_surfaces_silwidth5_alpha.png" width 1062 height 740 supersample |
| 86369 | | > 3 transparentBackground true |
| 86370 | | |
| 86371 | | > hide #!33.5 models |
| 86372 | | |
| 86373 | | > hide #!33.4 models |
| 86374 | | |
| 86375 | | > show #!33.6 models |
| 86376 | | |
| 86377 | | > show #!33.7 models |
| 86378 | | |
| 86379 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 86380 | | > paper/Figures/2024_Dec/Figure5/COPI- |
| 86381 | | > GOLPH3_model_surfaces_silwidth5_beta_prime.png" width 1062 height 740 |
| 86382 | | > supersample 3 |
| 86383 | | |
| 86384 | | > hide #!33.7 models |
| 86385 | | |
| 86386 | | > hide #!33.6 models |
| 86387 | | |
| 86388 | | > show #!33.8 models |
| 86389 | | |
| 86390 | | > show #!33.9 models |
| 86391 | | |
| 86392 | | > show #!33.10 models |
| 86393 | | |
| 86394 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 86395 | | > paper/Figures/2024_Dec/Figure5/COPI- |
| 86396 | | > GOLPH3_model_surfaces_silwidth5_beta.png" width 1062 height 740 supersample |
| 86397 | | > 3 transparentBackground true |
| 86398 | | |
| 86399 | | > hide #!33.10 models |
| 86400 | | |
| 86401 | | > hide #!33.9 models |
| 86402 | | |
| 86403 | | > hide #!33.8 models |
| 86404 | | |
| 86405 | | > show #!33.11 models |
| 86406 | | |
| 86407 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 86408 | | > paper/Figures/2024_Dec/Figure5/COPI- |
| 86409 | | > GOLPH3_model_surfaces_silwidth5_delta.png" width 1062 height 740 supersample |
| 86410 | | > 3 transparentBackground true |
| 86411 | | |
| 86412 | | > hide #!33.11 models |
| 86413 | | |
| 86414 | | > show #!33.12 models |
| 86415 | | |
| 86416 | | > show #!33.13 models |
| 86417 | | |
| 86418 | | > show #!33.14 models |
| 86419 | | |
| 86420 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 86421 | | > paper/Figures/2024_Dec/Figure5/COPI- |
| 86422 | | > GOLPH3_model_surfaces_silwidth5_gamma.png" width 1062 height 740 supersample |
| 86423 | | > 3 |
| 86424 | | |
| 86425 | | > hide #!33.14 models |
| 86426 | | |
| 86427 | | > hide #!33.13 models |
| 86428 | | |
| 86429 | | > hide #!33.12 models |
| 86430 | | |
| 86431 | | > show #!33.15 models |
| 86432 | | |
| 86433 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 86434 | | > paper/Figures/2024_Dec/Figure5/COPI- |
| 86435 | | > GOLPH3_model_surfaces_silwidth5_zeta.png" width 1062 height 740 supersample |
| 86436 | | > 3 transparentBackground true |
| 86437 | | |
| 86438 | | > hide #!33.15 models |
| 86439 | | |
| 86440 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 86441 | | > paper/Chimera sessions/20241217_chimera_for_figures_v2.cxs" |
| 86442 | | |
| 86443 | | > show #!33.7 models |
| 86444 | | |
| 86445 | | > show #!33.6 models |
| 86446 | | |
| 86447 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 86448 | | > paper/Figures/2024_Dec/Figure5/COPI- |
| 86449 | | > GOLPH3_model_surfaces_silwidth5_beta_prime_v2.png" width 1062 height 740 |
| 86450 | | > supersample 3 transparentBackground true |
| 86451 | | |
| 86452 | | > hide #!33.7 models |
| 86453 | | |
| 86454 | | > hide #!33.6 models |
| 86455 | | |
| 86456 | | > show #!33.12 models |
| 86457 | | |
| 86458 | | > show #!33.13 models |
| 86459 | | |
| 86460 | | > show #!33.14 models |
| 86461 | | |
| 86462 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 86463 | | > paper/Figures/2024_Dec/Figure5/COPI- |
| 86464 | | > GOLPH3_model_surfaces_silwidth5_gamma_v2.png" width 1062 height 740 |
| 86465 | | > supersample 3 transparentBackground true |
| 86466 | | |
| 86467 | | > hide #!33.12 models |
| 86468 | | |
| 86469 | | > hide #!33.13 models |
| 86470 | | |
| 86471 | | > hide #!33.14 models |
| 86472 | | |
| 86473 | | > show #!33.16 models |
| 86474 | | |
| 86475 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 86476 | | > paper/Figures/2024_Dec/Figure5/COPI- |
| 86477 | | > GOLPH3_model_surfaces_silwidth5_Arf1_v2.png" width 1062 height 740 |
| 86478 | | > supersample 3 transparentBackground true |
| 86479 | | |
| 86480 | | > hide #!33.16 models |
| 86481 | | |
| 86482 | | > show #!33.3 models |
| 86483 | | |
| 86484 | | > hide #!33.3 models |
| 86485 | | |
| 86486 | | > show #!33.2 models |
| 86487 | | |
| 86488 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 86489 | | > paper/Figures/2024_Dec/Figure5/COPI- |
| 86490 | | > GOLPH3_model_surfaces_silwidth5_Arf1_v3.png" width 1062 height 740 |
| 86491 | | > supersample 3 transparentBackground true |
| 86492 | | |
| 86493 | | > hide #!33.2 models |
| 86494 | | |
| 86495 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 86496 | | > paper/Figures/2024_Dec/Figure5/COPI- |
| 86497 | | > GOLPH3_outline_only_silwidth5_withjob073_GF3.png" width 1062 height 740 |
| 86498 | | > supersample 3 transparentBackground true |
| 86499 | | |
| 86500 | | > hide #!33 models |
| 86501 | | |
| 86502 | | > hide #!9 models |
| 86503 | | |
| 86504 | | > show #!5 models |
| 86505 | | |
| 86506 | | > set silhouetteWidth 1.5 |
| 86507 | | |
| 86508 | | > open 3kn1 |
| 86509 | | |
| 86510 | | 3kn1 title: |
| 86511 | | Crystal Structure of Golgi Phosphoprotein 3 N-term Truncation Variant [more |
| 86512 | | info...] |
| 86513 | | |
| 86514 | | Chain information for 3kn1 #35 |
| 86515 | | --- |
| 86516 | | Chain | Description | UniProt |
| 86517 | | A | Golgi phosphoprotein 3 | GOLP3_HUMAN 52-298 |
| 86518 | | |
| 86519 | | Non-standard residues in 3kn1 #35 |
| 86520 | | --- |
| 86521 | | SO4 — sulfate ion |
| 86522 | | |
| 86523 | | 3kn1 mmCIF Assemblies |
| 86524 | | --- |
| 86525 | | 1| author_defined_assembly |
| 86526 | | 2| software_defined_assembly |
| 86527 | | |
| 86528 | | 5 atoms have alternate locations. Control/examine alternate locations with |
| 86529 | | Altloc Explorer [start tool...] or the altlocs command. |
| 86530 | | |
| 86531 | | > color #35 darkgrey |
| 86532 | | |
| 86533 | | > color #35 #919191ff |
| 86534 | | |
| 86535 | | > ui tool show Matchmaker |
| 86536 | | |
| 86537 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 86538 | | QTBUG which explains how to reproduce. |
| 86539 | | |
| 86540 | | > matchmaker #35 to #15 |
| 86541 | | |
| 86542 | | Parameters |
| 86543 | | --- |
| 86544 | | Chain pairing | bb |
| 86545 | | Alignment algorithm | Needleman-Wunsch |
| 86546 | | Similarity matrix | BLOSUM-62 |
| 86547 | | SS fraction | 0.3 |
| 86548 | | Gap open (HH/SS/other) | 18/18/6 |
| 86549 | | Gap extend | 1 |
| 86550 | | SS matrix | | | H | S | O |
| 86551 | | ---|---|---|--- |
| 86552 | | H | 6 | -9 | -6 |
| 86553 | | S | | 6 | -6 |
| 86554 | | O | | | 4 |
| 86555 | | Iteration cutoff | 2 |
| 86556 | | |
| 86557 | | Matchmaker 20240711_copi_golph3_alpha_M1-T591_N135_H136_Y137_label.cif, chain |
| 86558 | | D (#15) with 3kn1, chain A (#35), sequence alignment score = 7 |
| 86559 | | Fewer than 3 residues aligned; cannot match |
| 86560 | | 20240711_copi_golph3_alpha_M1-T591_N135_H136_Y137_label.cif, chain D with |
| 86561 | | 3kn1, chain A |
| 86562 | | |
| 86563 | | > ui tool show Matchmaker |
| 86564 | | |
| 86565 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 86566 | | QTBUG which explains how to reproduce. |
| 86567 | | |
| 86568 | | > matchmaker #35 to #33.17 |
| 86569 | | |
| 86570 | | Parameters |
| 86571 | | --- |
| 86572 | | Chain pairing | bb |
| 86573 | | Alignment algorithm | Needleman-Wunsch |
| 86574 | | Similarity matrix | BLOSUM-62 |
| 86575 | | SS fraction | 0.3 |
| 86576 | | Gap open (HH/SS/other) | 18/18/6 |
| 86577 | | Gap extend | 1 |
| 86578 | | SS matrix | | | H | S | O |
| 86579 | | ---|---|---|--- |
| 86580 | | H | 6 | -9 | -6 |
| 86581 | | S | | 6 | -6 |
| 86582 | | O | | | 4 |
| 86583 | | Iteration cutoff | 2 |
| 86584 | | |
| 86585 | | Matchmaker combined_model_COPI_GOLPH3_surface Q, chain Q (#33.17) with 3kn1, |
| 86586 | | chain A (#35), sequence alignment score = 1224.5 |
| 86587 | | RMSD between 212 pruned atom pairs is 0.595 angstroms; (across all 239 pairs: |
| 86588 | | 1.555) |
| 86589 | | |
| 86590 | | |
| 86591 | | > view view7 |
| 86592 | | |
| 86593 | | > hide #!5 models |
| 86594 | | |
| 86595 | | > hide #35 atoms |
| 86596 | | |
| 86597 | | > view view7 |
| 86598 | | |
| 86599 | | > view view8 |
| 86600 | | |
| 86601 | | > show #!5 models |
| 86602 | | |
| 86603 | | > view view8 |
| 86604 | | |
| 86605 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 86606 | | > paper/Figures/2024_Dec/FigureS3/3KN1_job073_magnesium_T65.png" width 1062 |
| 86607 | | > height 740 supersample 3 transparentBackground true |
| 86608 | | |
| 86609 | | > hide #!5 models |
| 86610 | | |
| 86611 | | > show #55 models |
| 86612 | | |
| 86613 | | > hide #35 models |
| 86614 | | |
| 86615 | | > show #!5 models |
| 86616 | | |
| 86617 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 86618 | | > paper/Figures/2024_Dec/FigureS3/GOLPH3_AF3_job073_magnesium_T65.png" width |
| 86619 | | > 1062 height 740 supersample 3 transparentBackground true |
| 86620 | | |
| 86621 | | > show #35 models |
| 86622 | | |
| 86623 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 86624 | | > paper/Figures/2024_Dec/FigureS3/3KN1_GOLPH3_AF3_job073_magnesium_T65.png" |
| 86625 | | > width 1062 height 740 supersample 3 transparentBackground true |
| 86626 | | |
| 86627 | | > view view5 |
| 86628 | | |
| 86629 | | > hide #35 models |
| 86630 | | |
| 86631 | | > hide #55 models |
| 86632 | | |
| 86633 | | > show #!56 models |
| 86634 | | |
| 86635 | | > hide #!56 models |
| 86636 | | |
| 86637 | | > color #56 #919191ff models |
| 86638 | | |
| 86639 | | > color #56 #919191a0 models |
| 86640 | | |
| 86641 | | > color #56 #91919161 models |
| 86642 | | |
| 86643 | | > show #!56 models |
| 86644 | | |
| 86645 | | > color #5 silver models |
| 86646 | | |
| 86647 | | > color #5 #ebebebff models |
| 86648 | | |
| 86649 | | > hide #!5 models |
| 86650 | | |
| 86651 | | > show #!5 models |
| 86652 | | |
| 86653 | | > hide #!5 models |
| 86654 | | |
| 86655 | | > volume #56 level 0.1237 |
| 86656 | | |
| 86657 | | > view view3 |
| 86658 | | |
| 86659 | | > color #56 #919191ff models |
| 86660 | | |
| 86661 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 86662 | | > paper/Figures/2024_Dec/FigureS3/EMD-3720_tin_T0.png" width 1062 height 740 |
| 86663 | | > supersample 3 transparentBackground true |
| 86664 | | |
| 86665 | | > hide #!56 models |
| 86666 | | |
| 86667 | | > show #!5 models |
| 86668 | | |
| 86669 | | > show #!56 models |
| 86670 | | |
| 86671 | | > hide #!56 models |
| 86672 | | |
| 86673 | | > show #!56 models |
| 86674 | | |
| 86675 | | > hide #!56 models |
| 86676 | | |
| 86677 | | > show #!56 models |
| 86678 | | |
| 86679 | | > hide #!56 models |
| 86680 | | |
| 86681 | | > show #!56 models |
| 86682 | | |
| 86683 | | > hide #!56 models |
| 86684 | | |
| 86685 | | > show #!56 models |
| 86686 | | |
| 86687 | | > hide #!56 models |
| 86688 | | |
| 86689 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 86690 | | > paper/Figures/2024_Dec/FigureS3/COPI-GOLPH_mercury_T0.png" width 1062 height |
| 86691 | | > 740 supersample 3 transparentBackground true |
| 86692 | | |
| 86693 | | > show #!56 models |
| 86694 | | |
| 86695 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 86696 | | > paper/Figures/2024_Dec/FigureS3/COPI-GOLPH_mercury_EMD-3720_tin_T0.png" |
| 86697 | | > width 1062 height 740 supersample 3 transparentBackground true |
| 86698 | | |
| 86699 | | > hide #!5 models |
| 86700 | | |
| 86701 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 86702 | | > paper/Figures/2024_Dec/FigureS3/EMD-3720_tin_T0.png" width 1062 height 740 |
| 86703 | | > supersample 3 transparentBackground true |
| 86704 | | |
| 86705 | | > hide #!56 models |
| 86706 | | |
| 86707 | | > show #!61 models |
| 86708 | | |
| 86709 | | > hide #!61 models |
| 86710 | | |
| 86711 | | > show #!30 models |
| 86712 | | |
| 86713 | | > color #5 silver models |
| 86714 | | |
| 86715 | | > color #5 #c0c0c059 models |
| 86716 | | |
| 86717 | | > show #!5 models |
| 86718 | | |
| 86719 | | > view view3 |
| 86720 | | |
| 86721 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 86722 | | > paper/Chimera sessions/20241218_chimera_for_figures.cxs" includeMaps true |
| 86723 | | |
| 86724 | | [Repeated 1 time(s)] |
| 86725 | | |
| 86726 | | ——— End of log from Wed Dec 18 14:00:13 2024 ——— |
| 86727 | | |
| 86728 | | opened ChimeraX session |
| 86729 | | |
| 86730 | | > show #!12 models |
| 86731 | | |
| 86732 | | > hide #!12 models |
| 86733 | | |
| 86734 | | > show #!12 models |
| 86735 | | |
| 86736 | | > hide #!12 models |
| 86737 | | |
| 86738 | | > show #!12 models |
| 86739 | | |
| 86740 | | > hide #!12 models |
| 86741 | | |
| 86742 | | > show #!13 models |
| 86743 | | |
| 86744 | | > hide #!13 models |
| 86745 | | |
| 86746 | | > show #!11 models |
| 86747 | | |
| 86748 | | > hide #!11 models |
| 86749 | | |
| 86750 | | > view view1 |
| 86751 | | |
| 86752 | | > color #1 #929292ff models |
| 86753 | | |
| 86754 | | > color #5 #929292ff models |
| 86755 | | |
| 86756 | | > color #5 #92929257 models |
| 86757 | | |
| 86758 | | > color #5 #9292925a models |
| 86759 | | |
| 86760 | | > color #5 #92929245 models |
| 86761 | | |
| 86762 | | > color #5 #92929243 models |
| 86763 | | |
| 86764 | | > color #5 #92929240 models |
| 86765 | | |
| 86766 | | > show #!2 models |
| 86767 | | |
| 86768 | | > hide #!2 models |
| 86769 | | |
| 86770 | | > close #10 |
| 86771 | | |
| 86772 | | > close #11 |
| 86773 | | |
| 86774 | | > hide #!5 models |
| 86775 | | |
| 86776 | | > show #!9 models |
| 86777 | | |
| 86778 | | > color #9 #ffffff9e models |
| 86779 | | |
| 86780 | | > view view2 |
| 86781 | | |
| 86782 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 86783 | | > dataset/Structure |
| 86784 | | > files/lowpass_filtered/relion_locres_filtered_job073_lp10.mrc" |
| 86785 | | |
| 86786 | | Opened relion_locres_filtered_job073_lp10.mrc as #10, grid size 292,292,292, |
| 86787 | | pixel 1.71, shown at level 0.00471, step 2, values float32 |
| 86788 | | |
| 86789 | | > select add #10 |
| 86790 | | |
| 86791 | | 2 models selected |
| 86792 | | |
| 86793 | | > view matrix models #10,1,0,0,48.194,0,1,0,-2.6354e-13,0,0,1,81.86 |
| 86794 | | |
| 86795 | | > view matrix models #10,1,0,0,62.76,0,1,0,76.48,0,0,1,72.035 |
| 86796 | | |
| 86797 | | > ui tool show "Fit in Map" |
| 86798 | | |
| 86799 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 86800 | | QTBUG which explains how to reproduce. |
| 86801 | | |
| 86802 | | [Repeated 1 time(s)] |
| 86803 | | |
| 86804 | | > fitmap #10 inMap #9 |
| 86805 | | |
| 86806 | | Fit map relion_locres_filtered_job073_lp10.mrc in map |
| 86807 | | relion_locres_filtered_job073.mrc gaussian 3.00 using 31118 points |
| 86808 | | correlation = 0.9936, correlation about mean = 0.9641, overlap = 1.251 |
| 86809 | | steps = 148, shift = 4.31, angle = 0.963 degrees |
| 86810 | | |
| 86811 | | Position of relion_locres_filtered_job073_lp10.mrc (#10) relative to |
| 86812 | | relion_locres_filtered_job073.mrc gaussian 3.00 (#9) coordinates: |
| 86813 | | Matrix rotation and translation |
| 86814 | | 0.99999991 0.00040277 -0.00009344 -0.04448001 |
| 86815 | | -0.00040279 0.99999989 -0.00023994 0.15291109 |
| 86816 | | 0.00009334 0.00023998 0.99999997 -0.10766704 |
| 86817 | | Axis 0.50195513 -0.19535899 -0.84254134 |
| 86818 | | Axis point 398.26560604 158.51920073 0.00000000 |
| 86819 | | Rotation angle (degrees) 0.02739045 |
| 86820 | | Shift along axis 0.03851440 |
| 86821 | | |
| 86822 | | |
| 86823 | | > select subtract #10 |
| 86824 | | |
| 86825 | | Nothing selected |
| 86826 | | |
| 86827 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 86828 | | > dataset/Structure |
| 86829 | | > files/lowpass_filtered/relion_locres_filtered_job073_lp15.mrc" |
| 86830 | | |
| 86831 | | Opened relion_locres_filtered_job073_lp15.mrc as #11, grid size 292,292,292, |
| 86832 | | pixel 1.71, shown at level 0.00472, step 2, values float32 |
| 86833 | | |
| 86834 | | > select add #11 |
| 86835 | | |
| 86836 | | 2 models selected |
| 86837 | | |
| 86838 | | > view matrix models #11,1,0,0,73.245,0,1,0,61.099,0,0,1,8.8638 |
| 86839 | | |
| 86840 | | > view matrix models #11,1,0,0,66.168,0,1,0,57.831,0,0,1,76.092 |
| 86841 | | |
| 86842 | | > fitmap #11 inMap #9 |
| 86843 | | |
| 86844 | | Fit map relion_locres_filtered_job073_lp15.mrc in map |
| 86845 | | relion_locres_filtered_job073.mrc gaussian 3.00 using 31104 points |
| 86846 | | correlation = 0.9986, correlation about mean = 0.9821, overlap = 1.113 |
| 86847 | | steps = 136, shift = 18.6, angle = 0.976 degrees |
| 86848 | | |
| 86849 | | Position of relion_locres_filtered_job073_lp15.mrc (#11) relative to |
| 86850 | | relion_locres_filtered_job073.mrc gaussian 3.00 (#9) coordinates: |
| 86851 | | Matrix rotation and translation |
| 86852 | | 1.00000000 -0.00001898 -0.00000335 -0.01493183 |
| 86853 | | 0.00001898 1.00000000 -0.00008023 0.02391808 |
| 86854 | | 0.00000336 0.00008023 1.00000000 -0.00736432 |
| 86855 | | Axis 0.97234165 -0.04067227 0.22999454 |
| 86856 | | Axis point 0.00000000 42.53902945 289.42229673 |
| 86857 | | Rotation angle (degrees) 0.00472731 |
| 86858 | | Shift along axis -0.01718540 |
| 86859 | | |
| 86860 | | |
| 86861 | | > select subtract #11 |
| 86862 | | |
| 86863 | | Nothing selected |
| 86864 | | |
| 86865 | | > hide #!11 models |
| 86866 | | |
| 86867 | | > hide #!10 models |
| 86868 | | |
| 86869 | | > show #!10 models |
| 86870 | | |
| 86871 | | > hide #!9 models |
| 86872 | | |
| 86873 | | > show #!9 models |
| 86874 | | |
| 86875 | | > color #10 white models |
| 86876 | | |
| 86877 | | > color #10 #ffffff5e models |
| 86878 | | |
| 86879 | | > hide #!10 models |
| 86880 | | |
| 86881 | | > hide #!9 models |
| 86882 | | |
| 86883 | | > show #!9 models |
| 86884 | | |
| 86885 | | > hide #!9 models |
| 86886 | | |
| 86887 | | > show #!10 models |
| 86888 | | |
| 86889 | | > hide #!10 models |
| 86890 | | |
| 86891 | | > show #!9 models |
| 86892 | | |
| 86893 | | > hide #!9 models |
| 86894 | | |
| 86895 | | > show #!10 models |
| 86896 | | |
| 86897 | | > hide #!10 models |
| 86898 | | |
| 86899 | | > show #!9 models |
| 86900 | | |
| 86901 | | > hide #!9 models |
| 86902 | | |
| 86903 | | > show #!10 models |
| 86904 | | |
| 86905 | | > hide #!10 models |
| 86906 | | |
| 86907 | | > color #11 white models |
| 86908 | | |
| 86909 | | > color #11 #ffffff40 models |
| 86910 | | |
| 86911 | | > show #!10 models |
| 86912 | | |
| 86913 | | > show #!11 models |
| 86914 | | |
| 86915 | | > hide #!10 models |
| 86916 | | |
| 86917 | | > hide #!11 models |
| 86918 | | |
| 86919 | | > show #!11 models |
| 86920 | | |
| 86921 | | > volume #11 level 0.004647 |
| 86922 | | |
| 86923 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 86924 | | QTBUG which explains how to reproduce. |
| 86925 | | |
| 86926 | | > volume #11 step 1 |
| 86927 | | |
| 86928 | | > hide #!11 models |
| 86929 | | |
| 86930 | | > show #!10 models |
| 86931 | | |
| 86932 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 86933 | | QTBUG which explains how to reproduce. |
| 86934 | | |
| 86935 | | > volume #10 step 1 |
| 86936 | | |
| 86937 | | > volume #10 level 0.004876 |
| 86938 | | |
| 86939 | | > hide #!10 models |
| 86940 | | |
| 86941 | | > show #!9 models |
| 86942 | | |
| 86943 | | > show #!11 models |
| 86944 | | |
| 86945 | | > hide #!11 models |
| 86946 | | |
| 86947 | | > show #!11 models |
| 86948 | | |
| 86949 | | > hide #!11 models |
| 86950 | | |
| 86951 | | > hide #!9 models |
| 86952 | | |
| 86953 | | > show #!11 models |
| 86954 | | |
| 86955 | | > hide #!11 models |
| 86956 | | |
| 86957 | | > show #!11 models |
| 86958 | | |
| 86959 | | > hide #!11 models |
| 86960 | | |
| 86961 | | > show #!9 models |
| 86962 | | |
| 86963 | | > hide #!9 models |
| 86964 | | |
| 86965 | | > show #!11 models |
| 86966 | | |
| 86967 | | > hide #!11 models |
| 86968 | | |
| 86969 | | > close #10 |
| 86970 | | |
| 86971 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 86972 | | > dataset/Structure |
| 86973 | | > files/lowpass_filtered/relion_locres_filtered_job073_lp20.mrc" |
| 86974 | | |
| 86975 | | Opened relion_locres_filtered_job073_lp20.mrc as #10, grid size 292,292,292, |
| 86976 | | pixel 1.71, shown at level 0.00465, step 2, values float32 |
| 86977 | | |
| 86978 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 86979 | | QTBUG which explains how to reproduce. |
| 86980 | | |
| 86981 | | > volume #10 step 1 |
| 86982 | | |
| 86983 | | > close #10 |
| 86984 | | |
| 86985 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 86986 | | > dataset/Structure |
| 86987 | | > files/lowpass_filtered/relion_locres_filtered_job073_lp18.mrc" |
| 86988 | | |
| 86989 | | Opened relion_locres_filtered_job073_lp18.mrc as #10, grid size 292,292,292, |
| 86990 | | pixel 1.71, shown at level 0.00469, step 2, values float32 |
| 86991 | | |
| 86992 | | The cached device pixel ratio value was stale on window expose. Please file a |
| 86993 | | QTBUG which explains how to reproduce. |
| 86994 | | |
| 86995 | | > volume #10 step 1 |
| 86996 | | |
| 86997 | | > volume #10 level 0.004423 |
| 86998 | | |
| 86999 | | > select add #10 |
| 87000 | | |
| 87001 | | 2 models selected |
| 87002 | | |
| 87003 | | > show #!11 models |
| 87004 | | |
| 87005 | | > view matrix models #10,1,0,0,0.25024,0,1,0,0.4106,0,0,1,-0.13723 |
| 87006 | | |
| 87007 | | > view matrix models #10,1,0,0,73.268,0,1,0,29.177,0,0,1,9.446 |
| 87008 | | |
| 87009 | | > view matrix models #10,1,0,0,80.493,0,1,0,38.867,0,0,1,6.664 |
| 87010 | | |
| 87011 | | > view matrix models #10,1,0,0,74.466,0,1,0,40.91,0,0,1,3.465 |
| 87012 | | |
| 87013 | | > view matrix models #10,1,0,0,77.691,0,1,0,29.308,0,0,1,68.897 |
| 87014 | | |
| 87015 | | > view matrix models #10,1,0,0,65.539,0,1,0,67.126,0,0,1,52.33 |
| 87016 | | |
| 87017 | | > fitmap #10 inMap #9 |
| 87018 | | |
| 87019 | | Fit map relion_locres_filtered_job073_lp18.mrc in map |
| 87020 | | relion_locres_filtered_job073.mrc gaussian 3.00 using 327650 points |
| 87021 | | correlation = 0.9921, correlation about mean = 0.8658, overlap = 10.08 |
| 87022 | | steps = 128, shift = 25.9, angle = 0.964 degrees |
| 87023 | | |
| 87024 | | Position of relion_locres_filtered_job073_lp18.mrc (#10) relative to |
| 87025 | | relion_locres_filtered_job073.mrc gaussian 3.00 (#9) coordinates: |
| 87026 | | Matrix rotation and translation |
| 87027 | | 0.99999999 -0.00012278 0.00004763 -0.02435867 |
| 87028 | | 0.00012276 0.99999991 0.00040471 -0.13776759 |
| 87029 | | -0.00004768 -0.00040471 0.99999992 0.19335338 |
| 87030 | | Axis -0.95091910 0.11198055 0.28846700 |
| 87031 | | Axis point 0.00000000 432.41625976 358.07561116 |
| 87032 | | Rotation angle (degrees) 0.02438510 |
| 87033 | | Shift along axis 0.06351190 |
| 87034 | | |
| 87035 | | |
| 87036 | | > select subtract #10 |
| 87037 | | |
| 87038 | | Nothing selected |
| 87039 | | |
| 87040 | | > hide #!11 models |
| 87041 | | |
| 87042 | | > color #10 white models |
| 87043 | | |
| 87044 | | > color #10 #ffffff73 models |
| 87045 | | |
| 87046 | | > volume #10 level 0.004423 |
| 87047 | | |
| 87048 | | > color #10 #ffffff00 models |
| 87049 | | |
| 87050 | | > volume #10 level 0.004217 |
| 87051 | | |
| 87052 | | > hide #!10 models |
| 87053 | | |
| 87054 | | > show #!9 models |
| 87055 | | |
| 87056 | | > color #9 #ffffff00 models |
| 87057 | | |
| 87058 | | > hide #!9 models |
| 87059 | | |
| 87060 | | > show #!12 models |
| 87061 | | |
| 87062 | | > hide #!12 models |
| 87063 | | |
| 87064 | | > show #!11 models |
| 87065 | | |
| 87066 | | > color #11 #ffffff00 models |
| 87067 | | |
| 87068 | | > view view4 |
| 87069 | | |
| 87070 | | > view view3 |
| 87071 | | |
| 87072 | | > show #!9 models |
| 87073 | | |
| 87074 | | > hide #!9 models |
| 87075 | | |
| 87076 | | > show #!9 models |
| 87077 | | |
| 87078 | | > hide #!11 models |
| 87079 | | |
| 87080 | | > show #!11 models |
| 87081 | | |
| 87082 | | > hide #!11 models |
| 87083 | | |
| 87084 | | > show #!11 models |
| 87085 | | |
| 87086 | | > hide #!11 models |
| 87087 | | |
| 87088 | | > show #!11 models |
| 87089 | | |
| 87090 | | > hide #!9 models |
| 87091 | | |
| 87092 | | > show #!9 models |
| 87093 | | |
| 87094 | | > hide #!9 models |
| 87095 | | |
| 87096 | | > hide #!11 models |
| 87097 | | |
| 87098 | | > show #!10 models |
| 87099 | | |
| 87100 | | > hide #!10 models |
| 87101 | | |
| 87102 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87103 | | > paper/Chimera sessions/20240108_chimera_for_figures.cxs" |
| 87104 | | |
| 87105 | | > view view1 |
| 87106 | | |
| 87107 | | > show #!12 models |
| 87108 | | |
| 87109 | | > view view2 |
| 87110 | | |
| 87111 | | > hide #!12 models |
| 87112 | | |
| 87113 | | > show #!13 models |
| 87114 | | |
| 87115 | | > close #13 |
| 87116 | | |
| 87117 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 87118 | | > dataset/Structure files/lowpass_filtered/postprocess_job020_lp20.mrc" |
| 87119 | | |
| 87120 | | Opened postprocess_job020_lp20.mrc as #13, grid size 192,192,192, pixel 2.55, |
| 87121 | | shown at level 0.381, step 1, values float32 |
| 87122 | | |
| 87123 | | > show #!12 models |
| 87124 | | |
| 87125 | | > select add #13 |
| 87126 | | |
| 87127 | | 2 models selected |
| 87128 | | |
| 87129 | | > volume #13 level 0.2893 |
| 87130 | | |
| 87131 | | > view matrix models #13,1,0,0,139.68,0,1,0,-2.8358e-13,0,0,1,76.673 |
| 87132 | | |
| 87133 | | > view matrix models #13,1,0,0,134.62,0,1,0,64.36,0,0,1,69.659 |
| 87134 | | |
| 87135 | | > view matrix models #13,1,0,0,136.4,0,1,0,64.646,0,0,1,81.434 |
| 87136 | | |
| 87137 | | > fitmap #13 inMap #12 |
| 87138 | | |
| 87139 | | Fit map postprocess_job020_lp20.mrc in map postprocess_job020.mrc gaussian |
| 87140 | | 3.50 using 160918 points |
| 87141 | | correlation = 0.9996, correlation about mean = 0.9842, overlap = 2.411e+04 |
| 87142 | | steps = 64, shift = 3.5, angle = 1.11 degrees |
| 87143 | | |
| 87144 | | Position of postprocess_job020_lp20.mrc (#13) relative to |
| 87145 | | postprocess_job020.mrc gaussian 3.50 (#12) coordinates: |
| 87146 | | Matrix rotation and translation |
| 87147 | | 0.99999992 -0.00039160 -0.00001390 0.09972315 |
| 87148 | | 0.00039160 0.99999992 0.00001294 -0.10284749 |
| 87149 | | 0.00001390 -0.00001295 1.00000000 0.06088928 |
| 87150 | | Axis -0.03302073 -0.03545238 0.99882569 |
| 87151 | | Axis point 257.14905703 259.76552637 0.00000000 |
| 87152 | | Rotation angle (degrees) 0.02246322 |
| 87153 | | Shift along axis 0.06117103 |
| 87154 | | |
| 87155 | | |
| 87156 | | > select subtract #13 |
| 87157 | | |
| 87158 | | Nothing selected |
| 87159 | | |
| 87160 | | > color #13 white models |
| 87161 | | |
| 87162 | | > color #13 #ffffff00 models |
| 87163 | | |
| 87164 | | > volume #13 level 0.2676 |
| 87165 | | |
| 87166 | | > view view2 |
| 87167 | | |
| 87168 | | > volume #13 level 0.3061 |
| 87169 | | |
| 87170 | | > color #13 #ffffff59 models |
| 87171 | | |
| 87172 | | > hide #!13 models |
| 87173 | | |
| 87174 | | > hide #!12 models |
| 87175 | | |
| 87176 | | > show #!13 models |
| 87177 | | |
| 87178 | | > hide #!13 models |
| 87179 | | |
| 87180 | | > show #!12 models |
| 87181 | | |
| 87182 | | > hide #!12 models |
| 87183 | | |
| 87184 | | > show #!13 models |
| 87185 | | |
| 87186 | | > hide #!13 models |
| 87187 | | |
| 87188 | | > show #!12 models |
| 87189 | | |
| 87190 | | > hide #!12 models |
| 87191 | | |
| 87192 | | > show #!13 models |
| 87193 | | |
| 87194 | | > hide #!13 models |
| 87195 | | |
| 87196 | | > show #!12 models |
| 87197 | | |
| 87198 | | > hide #!12 models |
| 87199 | | |
| 87200 | | > show #!3 models |
| 87201 | | |
| 87202 | | > hide #!3 models |
| 87203 | | |
| 87204 | | > show #!3 models |
| 87205 | | |
| 87206 | | > hide #!3 models |
| 87207 | | |
| 87208 | | > show #!12 models |
| 87209 | | |
| 87210 | | > hide #!12 models |
| 87211 | | |
| 87212 | | > show #!13 models |
| 87213 | | |
| 87214 | | > hide #!13 models |
| 87215 | | |
| 87216 | | > show #!12 models |
| 87217 | | |
| 87218 | | > hide #!12 models |
| 87219 | | |
| 87220 | | > show #!13 models |
| 87221 | | |
| 87222 | | > show #!12 models |
| 87223 | | |
| 87224 | | > hide #!13 models |
| 87225 | | |
| 87226 | | > hide #!12 models |
| 87227 | | |
| 87228 | | > show #!12 models |
| 87229 | | |
| 87230 | | > show #!13 models |
| 87231 | | |
| 87232 | | > hide #!12 models |
| 87233 | | |
| 87234 | | > show #!12 models |
| 87235 | | |
| 87236 | | > hide #!12 models |
| 87237 | | |
| 87238 | | > show #!12 models |
| 87239 | | |
| 87240 | | > hide #!12 models |
| 87241 | | |
| 87242 | | > hide #!13 models |
| 87243 | | |
| 87244 | | > show #!13 models |
| 87245 | | |
| 87246 | | > show #!12 models |
| 87247 | | |
| 87248 | | > hide #!12 models |
| 87249 | | |
| 87250 | | > show #!12 models |
| 87251 | | |
| 87252 | | > hide #!12 models |
| 87253 | | |
| 87254 | | > volume #13 level 0.2913 |
| 87255 | | |
| 87256 | | > show #!12 models |
| 87257 | | |
| 87258 | | > hide #!12 models |
| 87259 | | |
| 87260 | | > show #!12 models |
| 87261 | | |
| 87262 | | > hide #!12 models |
| 87263 | | |
| 87264 | | > show #!12 models |
| 87265 | | |
| 87266 | | > hide #!12 models |
| 87267 | | |
| 87268 | | > show #!12 models |
| 87269 | | |
| 87270 | | > hide #!12 models |
| 87271 | | |
| 87272 | | > volume #13 level 0.2864 |
| 87273 | | |
| 87274 | | > show #!12 models |
| 87275 | | |
| 87276 | | > hide #!12 models |
| 87277 | | |
| 87278 | | > show #!12 models |
| 87279 | | |
| 87280 | | > hide #!12 models |
| 87281 | | |
| 87282 | | > show #!12 models |
| 87283 | | |
| 87284 | | > hide #!12 models |
| 87285 | | |
| 87286 | | > show #!12 models |
| 87287 | | |
| 87288 | | > hide #!12 models |
| 87289 | | |
| 87290 | | > show #!14 models |
| 87291 | | |
| 87292 | | > hide #!14 models |
| 87293 | | |
| 87294 | | > close #14 |
| 87295 | | |
| 87296 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3 |
| 87297 | | > dataset/Structure files/lowpass_filtered/postprocess_job020_lp25.mrc" |
| 87298 | | |
| 87299 | | Opened postprocess_job020_lp25.mrc as #14, grid size 192,192,192, pixel 2.55, |
| 87300 | | shown at level 0.366, step 1, values float32 |
| 87301 | | |
| 87302 | | > volume #14 level 0.2781 |
| 87303 | | |
| 87304 | | > select add #14 |
| 87305 | | |
| 87306 | | 2 models selected |
| 87307 | | |
| 87308 | | > view matrix models #14,1,0,0,136.07,0,1,0,17.791,0,0,1,78.58 |
| 87309 | | |
| 87310 | | > view matrix models #14,1,0,0,135.56,0,1,0,65.223,0,0,1,84.631 |
| 87311 | | |
| 87312 | | > view matrix models #14,1,0,0,135.56,0,1,0,65.211,0,0,1,84.537 |
| 87313 | | |
| 87314 | | > view matrix models #14,1,0,0,134.98,0,1,0,64.54,0,0,1,80.051 |
| 87315 | | |
| 87316 | | > fitmap #14 inMap #12 |
| 87317 | | |
| 87318 | | Fit map postprocess_job020_lp25.mrc in map postprocess_job020.mrc gaussian |
| 87319 | | 3.50 using 168404 points |
| 87320 | | correlation = 0.9983, correlation about mean = 0.9447, overlap = 2.372e+04 |
| 87321 | | steps = 52, shift = 2.05, angle = 1.11 degrees |
| 87322 | | |
| 87323 | | Position of postprocess_job020_lp25.mrc (#14) relative to |
| 87324 | | postprocess_job020.mrc gaussian 3.50 (#12) coordinates: |
| 87325 | | Matrix rotation and translation |
| 87326 | | 0.99999957 -0.00092653 0.00004801 0.21886995 |
| 87327 | | 0.00092653 0.99999957 -0.00004316 -0.21111158 |
| 87328 | | -0.00004797 0.00004321 1.00000000 0.26532685 |
| 87329 | | Axis 0.04649699 0.05167174 0.99758111 |
| 87330 | | Axis point 242.67580792 222.86700876 0.00000000 |
| 87331 | | Rotation angle (degrees) 0.05321492 |
| 87332 | | Shift along axis 0.26395334 |
| 87333 | | |
| 87334 | | |
| 87335 | | > select subtract #14 |
| 87336 | | |
| 87337 | | Nothing selected |
| 87338 | | |
| 87339 | | > color #14 white models |
| 87340 | | |
| 87341 | | > color #14 #ffffff5a models |
| 87342 | | |
| 87343 | | > color #14 #ffffff59 models |
| 87344 | | |
| 87345 | | > hide #!13 models |
| 87346 | | |
| 87347 | | > show #!12 models |
| 87348 | | |
| 87349 | | > hide #!12 models |
| 87350 | | |
| 87351 | | > show #!12 models |
| 87352 | | |
| 87353 | | > hide #!12 models |
| 87354 | | |
| 87355 | | > show #!12 models |
| 87356 | | |
| 87357 | | > hide #!12 models |
| 87358 | | |
| 87359 | | > view view2 |
| 87360 | | |
| 87361 | | > hide #!14 models |
| 87362 | | |
| 87363 | | > show #!12 models |
| 87364 | | |
| 87365 | | > show #!14 models |
| 87366 | | |
| 87367 | | > hide #!14 models |
| 87368 | | |
| 87369 | | > show #!14 models |
| 87370 | | |
| 87371 | | > hide #!14 models |
| 87372 | | |
| 87373 | | > show #!14 models |
| 87374 | | |
| 87375 | | > hide #!14 models |
| 87376 | | |
| 87377 | | > show #!14 models |
| 87378 | | |
| 87379 | | > hide #!14 models |
| 87380 | | |
| 87381 | | > show #!14 models |
| 87382 | | |
| 87383 | | > hide #!12 models |
| 87384 | | |
| 87385 | | > show #!12 models |
| 87386 | | |
| 87387 | | > hide #!12 models |
| 87388 | | |
| 87389 | | > hide #!14 models |
| 87390 | | |
| 87391 | | > show #!13 models |
| 87392 | | |
| 87393 | | > hide #!13 models |
| 87394 | | |
| 87395 | | > show #!12 models |
| 87396 | | |
| 87397 | | > show #!13 models |
| 87398 | | |
| 87399 | | > hide #!12 models |
| 87400 | | |
| 87401 | | > show #!12 models |
| 87402 | | |
| 87403 | | > hide #!12 models |
| 87404 | | |
| 87405 | | > volume #13 level 0.2893 |
| 87406 | | |
| 87407 | | > lighting |
| 87408 | | |
| 87409 | | Intensity: 0 |
| 87410 | | Direction: 0.577,-0.577,-0.577 |
| 87411 | | Color: 100,100,100 |
| 87412 | | Fill intensity: 0 |
| 87413 | | Fill direction: -0.2,-0.2,-0.959 |
| 87414 | | Fill color: 100,100,100 |
| 87415 | | Ambient intensity: 1.5 |
| 87416 | | Ambient color: 100,100,100 |
| 87417 | | Depth cue: 1, start 0.5, end 1, color 100,100,100 |
| 87418 | | Shadow: False (depth map size 2048, depth bias 0.005) |
| 87419 | | Multishadows: 64 (max 1024, depth map size 1024, depth bias 0.01) |
| 87420 | | |
| 87421 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87422 | | > paper/Chimera sessions/20250108_chimera_for_figures.cxs" includeMaps true |
| 87423 | | |
| 87424 | | > view view1 |
| 87425 | | |
| 87426 | | > hide #!30 models |
| 87427 | | |
| 87428 | | > show #!30 models |
| 87429 | | |
| 87430 | | > color #13 darkgrey models |
| 87431 | | |
| 87432 | | > color #13 #a9a9a93f models |
| 87433 | | |
| 87434 | | > color #13 #a9a9a940 models |
| 87435 | | |
| 87436 | | > color #13 #a9a9a900 models |
| 87437 | | |
| 87438 | | > color #13 #a9a9a940 models |
| 87439 | | |
| 87440 | | > set silhouetteWidth 5 |
| 87441 | | |
| 87442 | | > color #13 #a9a9a900 models |
| 87443 | | |
| 87444 | | > hide #!30 models |
| 87445 | | |
| 87446 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87447 | | > paper/Figures/2025_Jan/Figure1/triad_outlines/triad_outline_top_job020_lp20_silwid5_T100_view1.png" |
| 87448 | | > width 1056 height 846 supersample 3 transparentBackground true |
| 87449 | | |
| 87450 | | > view view2 |
| 87451 | | |
| 87452 | | > ui tool show "Side View" |
| 87453 | | |
| 87454 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87455 | | > paper/Figures/2025_Jan/Figure1/triad_outlines/triad_outline_side_job020_lp20_silwid5_T100_view2.png" |
| 87456 | | > width 1056 height 846 supersample 3 transparentBackground true |
| 87457 | | |
| 87458 | | > view view20 |
| 87459 | | |
| 87460 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87461 | | > paper/Figures/2025_Jan/Figure1/triad_outlines/triad_outline_bottom_job020_lp20_silwid5_T100_view20_withmem.png" |
| 87462 | | > width 1056 height 846 supersample 3 transparentBackground true |
| 87463 | | |
| 87464 | | > view view21 |
| 87465 | | |
| 87466 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87467 | | > paper/Figures/2025_Jan/Figure1/triad_outlines/triad_outline_bottom_job020_lp20_silwid5_T100_view21_onemem.png" |
| 87468 | | > width 1056 height 846 supersample 3 transparentBackground true |
| 87469 | | |
| 87470 | | > view view22 |
| 87471 | | |
| 87472 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87473 | | > paper/Figures/2025_Jan/Figure1/triad_outlines/triad_outline_bottom_job020_lp20_silwid5_T100_view22_memremoved.png" |
| 87474 | | > width 1056 height 846 supersample 3 transparentBackground true |
| 87475 | | |
| 87476 | | > set silhouetteWidth 1.5 |
| 87477 | | |
| 87478 | | > color #13 #a9a9a940 models |
| 87479 | | |
| 87480 | | > show #!30 models |
| 87481 | | |
| 87482 | | > color #13 darkgrey models |
| 87483 | | |
| 87484 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87485 | | > paper/Figures/2025_Jan/Figure1/soft_lighting/triad_modelfit_alum_bottom_job020_soft_silwid1_5_T75_view22_memremoved.png" |
| 87486 | | > width 1056 height 846 supersample 3 transparentBackground true |
| 87487 | | |
| 87488 | | > color #13 #929292ff models |
| 87489 | | |
| 87490 | | > color #13 #92929240 models |
| 87491 | | |
| 87492 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87493 | | > paper/Figures/2025_Jan/Figure1/soft_lighting/triad_modelfit_nickel_bottom_job020_soft_silwid1_5_T75_view22_memremoved.png" |
| 87494 | | > width 1056 height 846 supersample 3 transparentBackground true |
| 87495 | | |
| 87496 | | > color #13 #919191ff models |
| 87497 | | |
| 87498 | | > color #13 #91919140 models |
| 87499 | | |
| 87500 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87501 | | > paper/Figures/2025_Jan/Figure1/soft_lighting/triad_modelfit_tin_bottom_job020_soft_silwid1_5_T75_view22_memremoved.png" |
| 87502 | | > width 1056 height 846 supersample 3 transparentBackground true |
| 87503 | | |
| 87504 | | > color #13 darkgrey models |
| 87505 | | |
| 87506 | | > color #13 #a9a9a959 models |
| 87507 | | |
| 87508 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87509 | | > paper/Figures/2025_Jan/Figure1/soft_lighting/triad_modelfit_alum_bottom_job020_soft_silwid1_5_T65_view22_memremoved.png" |
| 87510 | | > width 1056 height 846 supersample 3 transparentBackground true |
| 87511 | | |
| 87512 | | > color #13 #929292ff models |
| 87513 | | |
| 87514 | | > color #13 #92929259 models |
| 87515 | | |
| 87516 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87517 | | > paper/Figures/2025_Jan/Figure1/soft_lighting/triad_modelfit_nickel_bottom_job020_soft_silwid1_5_T65_view22_memremoved.png" |
| 87518 | | > width 1056 height 846 supersample 3 transparentBackground true |
| 87519 | | |
| 87520 | | > color #13 #919191ff models |
| 87521 | | |
| 87522 | | > color #13 #91919159 models |
| 87523 | | |
| 87524 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87525 | | > paper/Figures/2025_Jan/Figure1/soft_lighting/triad_modelfit_tin_bottom_job020_soft_silwid1_5_T65_view22_memremoved.png" |
| 87526 | | > width 1056 height 846 supersample 3 transparentBackground true |
| 87527 | | |
| 87528 | | > view view21 |
| 87529 | | |
| 87530 | | > open "/Users/becca/Desktop/Postdoc/COPI notebooks and |
| 87531 | | > resources/Processing/Chimera sessions/20250103_J3565_leaf_mask.py" |
| 87532 | | |
| 87533 | | Failed opening file /Users/becca/Desktop/Postdoc/COPI notebooks and |
| 87534 | | resources/Processing/Chimera sessions/20250103_J3565_leaf_mask.py: |
| 87535 | | ChimeraX cannot open a regular Chimera session. An exporter from Chimera to |
| 87536 | | ChimeraX is available in the latest Chimera release. Use its File->Export |
| 87537 | | Scene |
| 87538 | | menu item, and change the resulting dialog's "File Type" to ChimeraX. |
| 87539 | | |
| 87540 | | > color #13 darkgrey models |
| 87541 | | |
| 87542 | | > color #13 #a9a9a940 models |
| 87543 | | |
| 87544 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87545 | | > paper/Figures/2025_Jan/Figure1/soft_lighting/triad_modelfit_alum_bottom_job020_soft_silwid1_5_T75_view21_onemem.png" |
| 87546 | | > width 782 height 613 supersample 3 transparentBackground true |
| 87547 | | |
| 87548 | | > color #13 #a9a9a959 models |
| 87549 | | |
| 87550 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87551 | | > paper/Figures/2025_Jan/Figure1/soft_lighting/triad_modelfit_alum_bottom_job020_soft_silwid1_5_T65_view21_onemem.png" |
| 87552 | | > width 782 height 613 supersample 3 transparentBackground true |
| 87553 | | |
| 87554 | | > color #13 #929292ff models |
| 87555 | | |
| 87556 | | > color #13 #92929259 models |
| 87557 | | |
| 87558 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87559 | | > paper/Figures/2025_Jan/Figure1/soft_lighting/triad_modelfit_nickel_bottom_job020_soft_silwid1_5_T65_view21_onemem.png" |
| 87560 | | > width 782 height 613 supersample 3 transparentBackground true |
| 87561 | | |
| 87562 | | > color #13 #92929240 models |
| 87563 | | |
| 87564 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87565 | | > paper/Figures/2025_Jan/Figure1/soft_lighting/triad_modelfit_nickel_bottom_job020_soft_silwid1_5_T75_view21_onemem.png" |
| 87566 | | > width 782 height 613 supersample 3 transparentBackground true |
| 87567 | | |
| 87568 | | > color #13 #919191ff models |
| 87569 | | |
| 87570 | | > color #13 #91919159 models |
| 87571 | | |
| 87572 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87573 | | > paper/Figures/2025_Jan/Figure1/soft_lighting/triad_modelfit_tin_bottom_job020_soft_silwid1_5_T75_view21_onemem.png" |
| 87574 | | > width 782 height 613 supersample 3 transparentBackground true |
| 87575 | | |
| 87576 | | > color #13 #91919140 models |
| 87577 | | |
| 87578 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87579 | | > paper/Figures/2025_Jan/Figure1/soft_lighting/triad_modelfit_tin_bottom_job020_soft_silwid1_5_T75_view21_onemem.png" |
| 87580 | | > width 782 height 613 supersample 3 transparentBackground true |
| 87581 | | |
| 87582 | | > set silhouetteWidth 5 |
| 87583 | | |
| 87584 | | > hide #!30 models |
| 87585 | | |
| 87586 | | > color #13 #91919100 models |
| 87587 | | |
| 87588 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87589 | | > paper/Figures/2025_Jan/Figure1/triad_outlines/triad_outline_bottom_job020_lp20_silwid5_T100_view21_onemem.png" |
| 87590 | | > width 782 height 613 supersample 3 transparentBackground true |
| 87591 | | |
| 87592 | | > view view1 |
| 87593 | | |
| 87594 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87595 | | > paper/Figures/2025_Jan/Figure1/triad_outlines/triad_outline_top_job020_lp20_silwid5_T100_view1.png" |
| 87596 | | > width 782 height 613 supersample 3 transparentBackground true |
| 87597 | | |
| 87598 | | > view view2 |
| 87599 | | |
| 87600 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87601 | | > paper/Figures/2025_Jan/Figure1/triad_outlines/triad_outline_side_job020_lp20_silwid5_T100_view2.png" |
| 87602 | | > width 782 height 613 supersample 3 transparentBackground true |
| 87603 | | |
| 87604 | | > view view20 |
| 87605 | | |
| 87606 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87607 | | > paper/Figures/2025_Jan/Figure1/triad_outlines/triad_outline_bottom_job020_lp20_silwid5_T100_view20_withmem.png" |
| 87608 | | > width 782 height 613 supersample 3 transparentBackground true |
| 87609 | | |
| 87610 | | > view view21 |
| 87611 | | |
| 87612 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87613 | | > paper/Figures/2025_Jan/Figure1/triad_outlines/triad_outline_bottom_job020_lp20_silwid5_T100_view21_onemem.png" |
| 87614 | | > width 782 height 613 supersample 3 transparentBackground true |
| 87615 | | |
| 87616 | | > view view22 |
| 87617 | | |
| 87618 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87619 | | > paper/Figures/2025_Jan/Figure1/triad_outlines/triad_outline_bottom_job020_lp20_silwid5_T100_view22_memremoved.png" |
| 87620 | | > width 782 height 613 supersample 3 transparentBackground true |
| 87621 | | |
| 87622 | | > color #13 darkgrey models |
| 87623 | | |
| 87624 | | > color #13 #a9a9a959 models |
| 87625 | | |
| 87626 | | > view view21 |
| 87627 | | |
| 87628 | | > show #!30 models |
| 87629 | | |
| 87630 | | > set silhouetteWidth 1.5 |
| 87631 | | |
| 87632 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87633 | | > paper/Figures/2025_Jan/Figure1/soft_lighting/triad_modelfit_alum_bottom_job020_soft_silwid1_5_T65_view21_onemem.png" |
| 87634 | | > width 782 height 613 supersample 3 transparentBackground true |
| 87635 | | |
| 87636 | | > color #13 #a9a9a940 models |
| 87637 | | |
| 87638 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87639 | | > paper/Figures/2025_Jan/Figure1/soft_lighting/triad_modelfit_alum_bottom_job020_soft_silwid1_5_T75_view21_onemem.png" |
| 87640 | | > width 782 height 613 supersample 3 transparentBackground true |
| 87641 | | |
| 87642 | | > color #13 #929292ff models |
| 87643 | | |
| 87644 | | > color #13 #92929259 models |
| 87645 | | |
| 87646 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87647 | | > paper/Figures/2025_Jan/Figure1/soft_lighting/triad_modelfit_nickel_bottom_job020_soft_silwid1_5_T65_view21_onemem.png" |
| 87648 | | > width 782 height 613 supersample 3 transparentBackground true |
| 87649 | | |
| 87650 | | > color #13 #92929240 models |
| 87651 | | |
| 87652 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87653 | | > paper/Figures/2025_Jan/Figure1/soft_lighting/triad_modelfit_nickel_bottom_job020_soft_silwid1_5_T75_view21_onemem.png" |
| 87654 | | > width 782 height 613 supersample 3 transparentBackground true |
| 87655 | | |
| 87656 | | > color #13 #919191ff models |
| 87657 | | |
| 87658 | | > color #13 #91919159 models |
| 87659 | | |
| 87660 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87661 | | > paper/Figures/2025_Jan/Figure1/soft_lighting/triad_modelfit_tin_bottom_job020_soft_silwid1_5_T65_view21_onemem.png" |
| 87662 | | > width 782 height 613 supersample 3 transparentBackground true |
| 87663 | | |
| 87664 | | > color #13 #91919140 models |
| 87665 | | |
| 87666 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87667 | | > paper/Figures/2025_Jan/Figure1/soft_lighting/triad_modelfit_tin_bottom_job020_soft_silwid1_5_T65_view21_onemem.png" |
| 87668 | | > width 782 height 613 supersample 3 transparentBackground true |
| 87669 | | |
| 87670 | | > view view1 |
| 87671 | | |
| 87672 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87673 | | > paper/Figures/2025_Jan/Figure1/soft_lighting/triad_modelfit_alum_top_job020_soft_silwid1_5_T65_view1.png" |
| 87674 | | > width 782 height 613 supersample 3 transparentBackground true |
| 87675 | | |
| 87676 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87677 | | > paper/Figures/2025_Jan/Figure1/soft_lighting/triad_modelfit_alum_top_job020_soft_silwid1_5_T75_view1.png" |
| 87678 | | > width 782 height 613 supersample 3 transparentBackground true |
| 87679 | | |
| 87680 | | > color #13 darkgrey models |
| 87681 | | |
| 87682 | | > color #13 #929292ff models |
| 87683 | | |
| 87684 | | > color #13 darkgrey models |
| 87685 | | |
| 87686 | | > color #13 #a9a9a959 models |
| 87687 | | |
| 87688 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87689 | | > paper/Figures/2025_Jan/Figure1/soft_lighting/triad_modelfit_alum_top_job020_soft_silwid1_5_T65_view1.png" |
| 87690 | | > width 782 height 613 supersample 3 transparentBackground true |
| 87691 | | |
| 87692 | | > color #13 #a9a9a940 models |
| 87693 | | |
| 87694 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87695 | | > paper/Figures/2025_Jan/Figure1/soft_lighting/triad_modelfit_alum_top_job020_soft_silwid1_5_T75_view1.png" |
| 87696 | | > width 782 height 613 supersample 3 transparentBackground true |
| 87697 | | |
| 87698 | | > color #13 #929292ff models |
| 87699 | | |
| 87700 | | > color #13 #92929259 models |
| 87701 | | |
| 87702 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87703 | | > paper/Figures/2025_Jan/Figure1/soft_lighting/triad_modelfit_nickel_top_job020_soft_silwid1_5_T65_view1.png" |
| 87704 | | > width 782 height 613 supersample 3 transparentBackground true |
| 87705 | | |
| 87706 | | > color #13 #92929240 models |
| 87707 | | |
| 87708 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87709 | | > paper/Figures/2025_Jan/Figure1/soft_lighting/triad_modelfit_nickel_top_job020_soft_silwid1_5_T75_view1.png" |
| 87710 | | > width 782 height 613 supersample 3 transparentBackground true |
| 87711 | | |
| 87712 | | > color #13 #919191ff models |
| 87713 | | |
| 87714 | | > color #13 #91919159 models |
| 87715 | | |
| 87716 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87717 | | > paper/Figures/2025_Jan/Figure1/soft_lighting/triad_modelfit_tin_top_job020_soft_silwid1_5_T65_view1.png" |
| 87718 | | > width 782 height 613 supersample 3 transparentBackground true |
| 87719 | | |
| 87720 | | > color #13 #91919140 models |
| 87721 | | |
| 87722 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87723 | | > paper/Figures/2025_Jan/Figure1/soft_lighting/triad_modelfit_tin_top_job020_soft_silwid1_5_T75_view1.png" |
| 87724 | | > width 782 height 613 supersample 3 transparentBackground true |
| 87725 | | |
| 87726 | | > view view2 |
| 87727 | | |
| 87728 | | > color #13 darkgrey models |
| 87729 | | |
| 87730 | | > color #13 #a9a9a959 models |
| 87731 | | |
| 87732 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87733 | | > paper/Figures/2025_Jan/Figure1/soft_lighting/triad_modelfit_alum_side_job020_soft_silwid1_5_T65_view2.png" |
| 87734 | | > width 782 height 613 supersample 3 transparentBackground true |
| 87735 | | |
| 87736 | | > color #13 #a9a9a940 models |
| 87737 | | |
| 87738 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87739 | | > paper/Figures/2025_Jan/Figure1/soft_lighting/triad_modelfit_alum_side_job020_soft_silwid1_5_T75_view2.png" |
| 87740 | | > width 782 height 613 supersample 3 transparentBackground true |
| 87741 | | |
| 87742 | | > color #13 #929292ff models |
| 87743 | | |
| 87744 | | > color #13 #92929259 models |
| 87745 | | |
| 87746 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87747 | | > paper/Figures/2025_Jan/Figure1/soft_lighting/triad_modelfit_nickel_side_job020_soft_silwid1_5_T65_view2.png" |
| 87748 | | > width 782 height 613 supersample 3 transparentBackground true |
| 87749 | | |
| 87750 | | > color #13 #92929240 models |
| 87751 | | |
| 87752 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87753 | | > paper/Figures/2025_Jan/Figure1/soft_lighting/triad_modelfit_nickel_side_job020_soft_silwid1_5_T75_view2.png" |
| 87754 | | > width 782 height 613 supersample 3 transparentBackground true |
| 87755 | | |
| 87756 | | > color #13 #919191ff models |
| 87757 | | |
| 87758 | | > color #13 #91919159 models |
| 87759 | | |
| 87760 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87761 | | > paper/Figures/2025_Jan/Figure1/soft_lighting/triad_modelfit_tin_side_job020_soft_silwid1_5_T65_view2.png" |
| 87762 | | > width 782 height 613 supersample 3 transparentBackground true |
| 87763 | | |
| 87764 | | > color #13 #91919140 models |
| 87765 | | |
| 87766 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87767 | | > paper/Figures/2025_Jan/Figure1/soft_lighting/triad_modelfit_tin_side_job020_soft_silwid1_5_T75_view2.png" |
| 87768 | | > width 782 height 613 supersample 3 transparentBackground true |
| 87769 | | |
| 87770 | | > hide #!13 models |
| 87771 | | |
| 87772 | | > show #!10 models |
| 87773 | | |
| 87774 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87775 | | > paper/Chimera sessions/20250108_chimera_for_figures_v2.cxs" includeMaps true |
| 87776 | | |
| 87777 | | > view view20 |
| 87778 | | |
| 87779 | | > hide #!10 models |
| 87780 | | |
| 87781 | | > show #!13 models |
| 87782 | | |
| 87783 | | > color #13 darkgrey models |
| 87784 | | |
| 87785 | | > color #13 #a9a9a959 models |
| 87786 | | |
| 87787 | | > color #13 #919191ff models |
| 87788 | | |
| 87789 | | > color #13 #91919159 models |
| 87790 | | |
| 87791 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87792 | | > paper/Figures/2025_Jan/Figure1/soft_lighting/triad_model_density/triad_modelfit_tin_bottom_job020_soft_silwid1_5_T65_view20_withmem.png" |
| 87793 | | > width 782 height 613 supersample 3 transparentBackground true |
| 87794 | | |
| 87795 | | > color #13 #91919140 models |
| 87796 | | |
| 87797 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87798 | | > paper/Figures/2025_Jan/Figure1/soft_lighting/triad_model_density/triad_modelfit_tin_bottom_job020_soft_silwid1_5_T75_view20_withmem.png" |
| 87799 | | > width 782 height 613 supersample 3 transparentBackground true |
| 87800 | | |
| 87801 | | > color #13 #929292ff models |
| 87802 | | |
| 87803 | | > color #13 #92929259 models |
| 87804 | | |
| 87805 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87806 | | > paper/Figures/2025_Jan/Figure1/soft_lighting/triad_model_density/triad_modelfit_nickel_bottom_job020_soft_silwid1_5_T65_view20_withmem.png" |
| 87807 | | > width 782 height 613 supersample 3 transparentBackground true |
| 87808 | | |
| 87809 | | > color #13 #92929240 models |
| 87810 | | |
| 87811 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87812 | | > paper/Figures/2025_Jan/Figure1/soft_lighting/triad_model_density/triad_modelfit_nickel_bottom_job020_soft_silwid1_5_T75_view20_withmem.png" |
| 87813 | | > width 782 height 613 supersample 3 transparentBackground true |
| 87814 | | |
| 87815 | | > color #13 darkgrey models |
| 87816 | | |
| 87817 | | > color #13 #a9a9a959 models |
| 87818 | | |
| 87819 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87820 | | > paper/Figures/2025_Jan/Figure1/soft_lighting/triad_model_density/triad_modelfit_alum_bottom_job020_soft_silwid1_5_T65_view20_withmem.png" |
| 87821 | | > width 782 height 613 supersample 3 transparentBackground true |
| 87822 | | |
| 87823 | | > color #13 #a9a9a940 models |
| 87824 | | |
| 87825 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87826 | | > paper/Figures/2025_Jan/Figure1/soft_lighting/triad_model_density/triad_modelfit_alum_bottom_job020_soft_silwid1_5_T75_view20_withmem.png" |
| 87827 | | > width 782 height 613 supersample 3 transparentBackground true |
| 87828 | | |
| 87829 | | > hide #!13 models |
| 87830 | | |
| 87831 | | > show #!11 models |
| 87832 | | |
| 87833 | | > show #!9 models |
| 87834 | | |
| 87835 | | > hide #!11 models |
| 87836 | | |
| 87837 | | > show #!11 models |
| 87838 | | |
| 87839 | | > hide #!11 models |
| 87840 | | |
| 87841 | | > show #!11 models |
| 87842 | | |
| 87843 | | > hide #!9 models |
| 87844 | | |
| 87845 | | > show #!9 models |
| 87846 | | |
| 87847 | | > hide #!11 models |
| 87848 | | |
| 87849 | | > show #!11 models |
| 87850 | | |
| 87851 | | > volume #11 level 0.0046 |
| 87852 | | |
| 87853 | | > volume #11 level 0.0048 |
| 87854 | | |
| 87855 | | > view view3 |
| 87856 | | |
| 87857 | | > hide #!11 models |
| 87858 | | |
| 87859 | | > hide #!9 models |
| 87860 | | |
| 87861 | | > show #!9 models |
| 87862 | | |
| 87863 | | > hide #!9 models |
| 87864 | | |
| 87865 | | > show #!11 models |
| 87866 | | |
| 87867 | | > volume #11 level 0.0047 |
| 87868 | | |
| 87869 | | > hide #!30 models |
| 87870 | | |
| 87871 | | > set silhouetteWidth 5 |
| 87872 | | |
| 87873 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87874 | | > paper/Figures/2025_Jan/Figure1/leaf_outlines/leaf_outline_side_job073_lp15_silwid5_T100_view3.png" |
| 87875 | | > width 782 height 613 supersample 3 transparentBackground true |
| 87876 | | |
| 87877 | | > color #11 darkgrey models |
| 87878 | | |
| 87879 | | > color #11 #a9a9a900 models |
| 87880 | | |
| 87881 | | > color #11 #a9a9a93a models |
| 87882 | | |
| 87883 | | > color #11 #a9a9a93c models |
| 87884 | | |
| 87885 | | > color #11 #a9a9a900 models |
| 87886 | | |
| 87887 | | > view view4 |
| 87888 | | |
| 87889 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87890 | | > paper/Figures/2025_Jan/Figure1/leaf_outlines/leaf_outline_bottom_job073_lp15_silwid5_T100_view4.png" |
| 87891 | | > width 782 height 613 supersample 3 transparentBackground true |
| 87892 | | |
| 87893 | | > view view18 |
| 87894 | | |
| 87895 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87896 | | > paper/Figures/2025_Jan/Figure1/leaf_outlines/leaf_outline_top_job073_lp15_silwid5_T100_view18.png" |
| 87897 | | > width 782 height 613 supersample 3 transparentBackground true |
| 87898 | | |
| 87899 | | > view view4 |
| 87900 | | |
| 87901 | | > hide #!11 models |
| 87902 | | |
| 87903 | | > show #!5 models |
| 87904 | | |
| 87905 | | > show #!30 models |
| 87906 | | |
| 87907 | | > color #11 darkgrey models |
| 87908 | | |
| 87909 | | > color #11 #a9a9a959 models |
| 87910 | | |
| 87911 | | > set silhouetteWidth 1.5 |
| 87912 | | |
| 87913 | | > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3 |
| 87914 | | > paper/Figures/2025_Jan/Figure1/soft_lighting/leaf_model_density/leaf_modelfit_alum_bottom_job073_soft_silwid1_5_T65_view4_memremoved.png" |
| 87915 | | > width 782 height 613 supersample 3 transparentBackground true |
| 87916 | | |
| 87917 | | > color #5 darkgrey models |
| 87918 | | |
| 87919 | | > color #5 #a9a9a959 models |
| | 1352 | [deleted to fit within ticket limits] |
| | 1353 | |
![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
