Context Navigation

← Previous Ticket
Next Ticket →

#19798 closed defect

glClear: invalid framebuffer operation on statusbar expose — at Version 1

Reported by:	jflecken@…	Owned by:	Tom Goddard
Priority:	normal	Milestone:
Component:	Graphics	Version:
Keywords:		Cc:
Blocked By:		Blocking:
Notify when closed:		Platform:	all
Project:	ChimeraX

Description (last modified by Eric Pettersen)

The following bug report has been submitted:
Platform:        macOS-26.2-arm64-arm-64bit
ChimeraX Version: 1.10 (2025-06-26 08:57:52 UTC)
Description
Replace this text with list of actions that caused this problem to occur

Log:
UCSF ChimeraX version: 1.10 (2025-06-26)  
© 2016-2025 Regents of the University of California. All rights reserved.  

> open /Users/jamesfleckenstein/Downloads/all-models.cxs format session

Log from Wed Jan 7 13:23:09 2026UCSF ChimeraX version: 1.8 (2024-06-10)  
© 2016-2024 Regents of the University of California. All rights reserved.  

> open C:/Users/David/Documents/lab/Berndsen/EatA/AAA_final-sessions/all-maps-
> aligned_1.cxs

Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc as #1.1, grid size
320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 0 as #1.3.1, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 1 as #1.3.2, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 2 as #1.3.3, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 3 as #1.3.4, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 4 as #1.3.5, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 5 as #1.3.6, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 6 as #1.3.7, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 7 as #1.3.8, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 8 as #1.3.9, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 9 as #1.3.10, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 10 as #1.3.11, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc masked as #1.4,
grid size 65,50,86, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc as #2.1, grid size
320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 0 as #2.3.1, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 1 as #2.3.2, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 2 as #2.3.3, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 3 as #2.3.4, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 4 as #2.3.5, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 5 as #2.3.6, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 6 as #2.3.7, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 7 as #2.3.8, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 8 as #2.3.9, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 9 as #2.3.10, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 10 as #2.3.11, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc masked as #2.4,
grid size 65,49,89, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc masked gaussian as
#2.5, grid size 65,49,89, pixel 0.928, shown at level 0.729, step 1, values
float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 0 as #3.2.1, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 1 as #3.2.2, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 2 as #3.2.3, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 3 as #3.2.4, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 4 as #3.2.5, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 5 as #3.2.6, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 6 as #3.2.7, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 7 as #3.2.8, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 8 as #3.2.9, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc masked as #3.4,
grid size 78,80,66, pixel 0.928, shown at level 0.52, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc masked gaussian as
#3.5, grid size 78,80,66, pixel 0.928, shown at level 0.532, step 1, values
float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc as #3.6, grid size
320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 as #4.1, grid size 356,356,356,
pixel 0.86, shown at level 11, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian as #4.3, grid size 356,356,356,
pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 0 as #4.4.1, grid size
356,356,356, pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 1 as #4.4.2, grid size
356,356,356, pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 2 as #4.4.3, grid size
356,356,356, pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 3 as #4.4.4, grid size
356,356,356, pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 4 as #4.4.5, grid size
356,356,356, pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 5 as #4.4.6, grid size
356,356,356, pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 6 as #4.4.7, grid size
356,356,356, pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 7 as #4.4.8, grid size
356,356,356, pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 8 as #4.4.9, grid size
356,356,356, pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 9 as #4.4.10, grid size
356,356,356, pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 10 as #4.4.11, grid size
356,356,356, pixel 0.86, shown at level 5.72, step 1, values float32  
Opened cryosparc_P6_J1626_007_volume_map_sharp.mrc as #4.5, grid size
356,356,356, pixel 0.86, shown at level 0.0747, step 1, values float32  
Opened cryosparc_P6_J1599_004_volume_map_sharp_resampled.mrc as #4.6, grid
size 356,356,356, pixel 0.86, shown at level 0.225, step 1, values float32  
Opened cryosparc_P6_J1295_002_volume_map_sharp_resampled.mrc as #4.7, grid
size 356,356,356, pixel 0.86, shown at level 0.229, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 0 as #4.8.1, grid size
356,356,356, pixel 0.86, shown at level 11, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 1 as #4.8.2, grid size
356,356,356, pixel 0.86, shown at level 11, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 2 as #4.8.3, grid size
356,356,356, pixel 0.86, shown at level 11, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 3 as #4.8.4, grid size
356,356,356, pixel 0.86, shown at level 11, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 4 as #4.8.5, grid size
356,356,356, pixel 0.86, shown at level 11, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 5 as #4.8.6, grid size
356,356,356, pixel 0.86, shown at level 11, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 6 as #4.8.7, grid size
356,356,356, pixel 0.86, shown at level 11, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 7 as #4.8.8, grid size
356,356,356, pixel 0.86, shown at level 11, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 8 as #4.8.9, grid size
356,356,356, pixel 0.86, shown at level 11, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 9 as #4.8.10, grid size
356,356,356, pixel 0.86, shown at level 11, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian as #4.9, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 0 as #4.10.1, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 1 as #4.10.2, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 2 as #4.10.3, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 3 as #4.10.4, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 4 as #4.10.5, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 5 as #4.10.6, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 6 as #4.10.7, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 7 as #4.10.8, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 8 as #4.10.9, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 9 as #4.10.10, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 as #4.11, grid size 356,356,356,
pixel 0.86, shown at level 17.6, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 masked as #4.12, grid size
84,78,83, pixel 0.86, shown at level 12.5, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 masked gaussian as #4.13, grid
size 84,78,83, pixel 0.86, shown at level 10.1, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 masked gaussian as #4.14, grid
size 84,78,83, pixel 0.86, shown at level 2.79, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc as #5.1, grid size
320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 0 as #5.3.1, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 1 as #5.3.2, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 2 as #5.3.3, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 3 as #5.3.4, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 4 as #5.3.5, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 5 as #5.3.6, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 6 as #5.3.7, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 7 as #5.3.8, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 8 as #5.3.9, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 9 as #5.3.10, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 10 as #5.3.11, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc as #6.1, grid size
320,320,320, pixel 0.938, shown at level 0.152, step 1, values float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian as #6.3,
grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1, values
float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 0 as
#6.4.1, grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1,
values float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 1 as
#6.4.2, grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1,
values float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 2 as
#6.4.3, grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1,
values float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 3 as
#6.4.4, grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1,
values float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 4 as
#6.4.5, grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1,
values float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 5 as
#6.4.6, grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1,
values float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 6 as
#6.4.7, grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1,
values float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 7 as
#6.4.8, grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1,
values float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 8 as
#6.4.9, grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1,
values float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 9 as
#6.4.10, grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1,
values float32  
Log from Wed Jan 7 13:06:56 2026UCSF ChimeraX version: 1.8 (2024-06-10)  
© 2016-2024 Regents of the University of California. All rights reserved.  

> open C:/Users/David/Documents/lab/Berndsen/EatA/AAA_final-sessions/all-maps-
> aligned_Fig4-edit2.cxs

Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc as #1, grid size
320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc as #2, grid size
320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc as #3, grid size
320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc as #5, grid size
320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc as #6, grid size
320,320,320, pixel 0.938, shown at level 0.152, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian as #13, grid size 356,356,356,
pixel 0.86, shown at level 5.72, step 1, values float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian as #14,
grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1, values
float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 0 as #18.1, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 1 as #18.2, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 2 as #18.3, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 3 as #18.4, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 4 as #18.5, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 5 as #18.6, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 6 as #18.7, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 7 as #18.8, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 8 as #18.9, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 9 as #18.10, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 10 as #18.11, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 0 as #20.1, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 1 as #20.2, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 2 as #20.3, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 3 as #20.4, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 4 as #20.5, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 5 as #20.6, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 6 as #20.7, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 7 as #20.8, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 8 as #20.9, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 9 as #20.10, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 10 as #20.11, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 0 as #17.1, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 1 as #17.2, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 2 as #17.3, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 3 as #17.4, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 4 as #17.5, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 5 as #17.6, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 6 as #17.7, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 7 as #17.8, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 8 as #17.9, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 9 as #17.10, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 10 as #17.11, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 0 as #15.1, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 1 as #15.2, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 2 as #15.3, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 3 as #15.4, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 4 as #15.5, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 5 as #15.6, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 6 as #15.7, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 7 as #15.8, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 8 as #15.9, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 0 as #19.1, grid size 356,356,356,
pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 1 as #19.2, grid size 356,356,356,
pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 2 as #19.3, grid size 356,356,356,
pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 3 as #19.4, grid size 356,356,356,
pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 4 as #19.5, grid size 356,356,356,
pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 5 as #19.6, grid size 356,356,356,
pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 6 as #19.7, grid size 356,356,356,
pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 7 as #19.8, grid size 356,356,356,
pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 8 as #19.9, grid size 356,356,356,
pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 9 as #19.10, grid size
356,356,356, pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 10 as #19.11, grid size
356,356,356, pixel 0.86, shown at level 5.72, step 1, values float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 0 as #21.1,
grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1, values
float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 1 as #21.2,
grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1, values
float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 2 as #21.3,
grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1, values
float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 3 as #21.4,
grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1, values
float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 4 as #21.5,
grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1, values
float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 5 as #21.6,
grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1, values
float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 6 as #21.7,
grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1, values
float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 7 as #21.8,
grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1, values
float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 8 as #21.9,
grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1, values
float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 9 as
#21.10, grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1,
values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 as #4, grid size 356,356,356,
pixel 0.86, shown at level 11, step 1, values float32  
Opened cryosparc_P6_J1626_007_volume_map_sharp.mrc as #24, grid size
356,356,356, pixel 0.86, shown at level 0.0747, step 1, values float32  
Opened cryosparc_P6_J1599_004_volume_map_sharp_resampled.mrc as #25, grid size
356,356,356, pixel 0.86, shown at level 0.225, step 1, values float32  
Opened cryosparc_P6_J1295_002_volume_map_sharp_resampled.mrc as #26, grid size
356,356,356, pixel 0.86, shown at level 0.229, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 0 as #27.1, grid size 356,356,356,
pixel 0.86, shown at level 11, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 1 as #27.2, grid size 356,356,356,
pixel 0.86, shown at level 11, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 2 as #27.3, grid size 356,356,356,
pixel 0.86, shown at level 11, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 3 as #27.4, grid size 356,356,356,
pixel 0.86, shown at level 11, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 4 as #27.5, grid size 356,356,356,
pixel 0.86, shown at level 11, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 5 as #27.6, grid size 356,356,356,
pixel 0.86, shown at level 11, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 6 as #27.7, grid size 356,356,356,
pixel 0.86, shown at level 11, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 7 as #27.8, grid size 356,356,356,
pixel 0.86, shown at level 11, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 8 as #27.9, grid size 356,356,356,
pixel 0.86, shown at level 11, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 9 as #27.10, grid size
356,356,356, pixel 0.86, shown at level 11, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian as #28, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 0 as #29.1, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 1 as #29.2, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 2 as #29.3, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 3 as #29.4, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 4 as #29.5, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 5 as #29.6, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 6 as #29.7, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 7 as #29.8, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 8 as #29.9, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 9 as #29.10, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc masked as #30, grid
size 78,80,66, pixel 0.928, shown at level 0.52, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 as #31, grid size 356,356,356,
pixel 0.86, shown at level 17.6, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 masked as #32, grid size 84,78,83,
pixel 0.86, shown at level 12.5, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 masked gaussian as #33, grid size
84,78,83, pixel 0.86, shown at level 10.1, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 masked gaussian as #34, grid size
84,78,83, pixel 0.86, shown at level 2.79, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc masked as #35, grid
size 65,50,86, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc masked as #36, grid
size 65,49,89, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc masked gaussian as
#37, grid size 78,80,66, pixel 0.928, shown at level 0.532, step 1, values
float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc masked gaussian as
#38, grid size 65,50,86, pixel 0.928, shown at level 0.578, step 1, values
float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc masked gaussian as
#39, grid size 65,49,89, pixel 0.928, shown at level 0.729, step 1, values
float32  
Log from Wed Dec 10 17:24:00 2025UCSF ChimeraX version: 1.8 (2024-06-10)  
© 2016-2024 Regents of the University of California. All rights reserved.  

> open C:\\\Users\\\David\\\Documents\\\lab\\\Berndsen\\\EatA\\\AAA_final-
> sessions\\\all-maps-aligned_Fig4-edit2.cxs

Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc as #1, grid size
320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc as #2, grid size
320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc as #3, grid size
320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc as #5, grid size
320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc as #6, grid size
320,320,320, pixel 0.938, shown at level 0.152, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian as #13, grid size 356,356,356,
pixel 0.86, shown at level 5.72, step 1, values float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian as #14,
grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1, values
float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 0 as #18.1, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 1 as #18.2, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 2 as #18.3, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 3 as #18.4, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 4 as #18.5, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 5 as #18.6, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 6 as #18.7, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 7 as #18.8, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 8 as #18.9, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 9 as #18.10, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 10 as #18.11, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 0 as #20.1, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 1 as #20.2, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 2 as #20.3, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 3 as #20.4, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 4 as #20.5, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 5 as #20.6, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 6 as #20.7, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 7 as #20.8, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 8 as #20.9, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 9 as #20.10, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 10 as #20.11, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 0 as #17.1, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 1 as #17.2, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 2 as #17.3, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 3 as #17.4, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 4 as #17.5, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 5 as #17.6, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 6 as #17.7, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 7 as #17.8, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 8 as #17.9, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 9 as #17.10, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 10 as #17.11, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 0 as #15.1, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 1 as #15.2, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 2 as #15.3, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 3 as #15.4, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 4 as #15.5, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 5 as #15.6, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 6 as #15.7, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 7 as #15.8, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 8 as #15.9, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 0 as #19.1, grid size 356,356,356,
pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 1 as #19.2, grid size 356,356,356,
pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 2 as #19.3, grid size 356,356,356,
pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 3 as #19.4, grid size 356,356,356,
pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 4 as #19.5, grid size 356,356,356,
pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 5 as #19.6, grid size 356,356,356,
pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 6 as #19.7, grid size 356,356,356,
pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 7 as #19.8, grid size 356,356,356,
pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 8 as #19.9, grid size 356,356,356,
pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 9 as #19.10, grid size
356,356,356, pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 10 as #19.11, grid size
356,356,356, pixel 0.86, shown at level 5.72, step 1, values float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 0 as #21.1,
grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1, values
float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 1 as #21.2,
grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1, values
float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 2 as #21.3,
grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1, values
float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 3 as #21.4,
grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1, values
float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 4 as #21.5,
grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1, values
float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 5 as #21.6,
grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1, values
float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 6 as #21.7,
grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1, values
float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 7 as #21.8,
grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1, values
float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 8 as #21.9,
grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1, values
float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 9 as
#21.10, grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1,
values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 as #4, grid size 356,356,356,
pixel 0.86, shown at level 11, step 1, values float32  
Opened cryosparc_P6_J1626_007_volume_map_sharp.mrc as #24, grid size
356,356,356, pixel 0.86, shown at level 0.0747, step 1, values float32  
Opened cryosparc_P6_J1599_004_volume_map_sharp_resampled.mrc as #25, grid size
356,356,356, pixel 0.86, shown at level 0.225, step 1, values float32  
Opened cryosparc_P6_J1295_002_volume_map_sharp_resampled.mrc as #26, grid size
356,356,356, pixel 0.86, shown at level 0.229, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 0 as #27.1, grid size 356,356,356,
pixel 0.86, shown at level 11, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 1 as #27.2, grid size 356,356,356,
pixel 0.86, shown at level 11, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 2 as #27.3, grid size 356,356,356,
pixel 0.86, shown at level 11, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 3 as #27.4, grid size 356,356,356,
pixel 0.86, shown at level 11, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 4 as #27.5, grid size 356,356,356,
pixel 0.86, shown at level 11, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 5 as #27.6, grid size 356,356,356,
pixel 0.86, shown at level 11, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 6 as #27.7, grid size 356,356,356,
pixel 0.86, shown at level 11, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 7 as #27.8, grid size 356,356,356,
pixel 0.86, shown at level 11, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 8 as #27.9, grid size 356,356,356,
pixel 0.86, shown at level 11, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 9 as #27.10, grid size
356,356,356, pixel 0.86, shown at level 11, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian as #28, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 0 as #29.1, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 1 as #29.2, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 2 as #29.3, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 3 as #29.4, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 4 as #29.5, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 5 as #29.6, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 6 as #29.7, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 7 as #29.8, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 8 as #29.9, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 9 as #29.10, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc masked as #30, grid
size 78,80,66, pixel 0.928, shown at level 0.52, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 as #31, grid size 356,356,356,
pixel 0.86, shown at level 17.6, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 masked as #32, grid size 84,78,83,
pixel 0.86, shown at level 12.5, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 masked gaussian as #33, grid size
84,78,83, pixel 0.86, shown at level 10.1, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 masked gaussian as #34, grid size
84,78,83, pixel 0.86, shown at level 2.79, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc masked as #35, grid
size 65,50,86, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc masked as #36, grid
size 65,49,89, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc masked gaussian as
#37, grid size 78,80,66, pixel 0.928, shown at level 0.532, step 1, values
float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc masked gaussian as
#38, grid size 65,50,86, pixel 0.928, shown at level 0.578, step 1, values
float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc masked gaussian as
#39, grid size 65,49,89, pixel 0.928, shown at level 0.729, step 1, values
float32  
Log from Wed Nov 26 13:25:16 2025UCSF ChimeraX version: 1.8 (2024-06-10)  
© 2016-2024 Regents of the University of California. All rights reserved.  

> open C:\\\Users\\\David\\\Documents\\\lab\\\Berndsen\\\EatA\\\AAA_final-
> sessions\\\all-maps-aligned_Fig4-edit2.cxs

Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc as #1, grid size
320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc as #2, grid size
320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc as #3, grid size
320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc as #5, grid size
320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc as #6, grid size
320,320,320, pixel 0.938, shown at level 0.152, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian as #13, grid size 356,356,356,
pixel 0.86, shown at level 5.72, step 1, values float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian as #14,
grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1, values
float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 0 as #18.1, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 1 as #18.2, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 2 as #18.3, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 3 as #18.4, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 4 as #18.5, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 5 as #18.6, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 6 as #18.7, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 7 as #18.8, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 8 as #18.9, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 9 as #18.10, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 10 as #18.11, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 0 as #20.1, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 1 as #20.2, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 2 as #20.3, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 3 as #20.4, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 4 as #20.5, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 5 as #20.6, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 6 as #20.7, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 7 as #20.8, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 8 as #20.9, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 9 as #20.10, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 10 as #20.11, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 0 as #17.1, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 1 as #17.2, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 2 as #17.3, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 3 as #17.4, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 4 as #17.5, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 5 as #17.6, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 6 as #17.7, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 7 as #17.8, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 8 as #17.9, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 9 as #17.10, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 10 as #17.11, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 0 as #15.1, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 1 as #15.2, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 2 as #15.3, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 3 as #15.4, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 4 as #15.5, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 5 as #15.6, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 6 as #15.7, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 7 as #15.8, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 8 as #15.9, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 0 as #19.1, grid size 356,356,356,
pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 1 as #19.2, grid size 356,356,356,
pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 2 as #19.3, grid size 356,356,356,
pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 3 as #19.4, grid size 356,356,356,
pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 4 as #19.5, grid size 356,356,356,
pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 5 as #19.6, grid size 356,356,356,
pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 6 as #19.7, grid size 356,356,356,
pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 7 as #19.8, grid size 356,356,356,
pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 8 as #19.9, grid size 356,356,356,
pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 9 as #19.10, grid size
356,356,356, pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 10 as #19.11, grid size
356,356,356, pixel 0.86, shown at level 5.72, step 1, values float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 0 as #21.1,
grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1, values
float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 1 as #21.2,
grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1, values
float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 2 as #21.3,
grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1, values
float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 3 as #21.4,
grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1, values
float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 4 as #21.5,
grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1, values
float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 5 as #21.6,
grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1, values
float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 6 as #21.7,
grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1, values
float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 7 as #21.8,
grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1, values
float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 8 as #21.9,
grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1, values
float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 9 as
#21.10, grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1,
values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 as #4, grid size 356,356,356,
pixel 0.86, shown at level 11, step 1, values float32  
Opened cryosparc_P6_J1626_007_volume_map_sharp.mrc as #24, grid size
356,356,356, pixel 0.86, shown at level 0.0747, step 1, values float32  
Opened cryosparc_P6_J1599_004_volume_map_sharp_resampled.mrc as #25, grid size
356,356,356, pixel 0.86, shown at level 0.225, step 1, values float32  
Opened cryosparc_P6_J1295_002_volume_map_sharp_resampled.mrc as #26, grid size
356,356,356, pixel 0.86, shown at level 0.229, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 0 as #27.1, grid size 356,356,356,
pixel 0.86, shown at level 11, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 1 as #27.2, grid size 356,356,356,
pixel 0.86, shown at level 11, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 2 as #27.3, grid size 356,356,356,
pixel 0.86, shown at level 11, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 3 as #27.4, grid size 356,356,356,
pixel 0.86, shown at level 11, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 4 as #27.5, grid size 356,356,356,
pixel 0.86, shown at level 11, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 5 as #27.6, grid size 356,356,356,
pixel 0.86, shown at level 11, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 6 as #27.7, grid size 356,356,356,
pixel 0.86, shown at level 11, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 7 as #27.8, grid size 356,356,356,
pixel 0.86, shown at level 11, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 8 as #27.9, grid size 356,356,356,
pixel 0.86, shown at level 11, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 9 as #27.10, grid size
356,356,356, pixel 0.86, shown at level 11, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian as #28, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 0 as #29.1, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 1 as #29.2, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 2 as #29.3, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 3 as #29.4, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 4 as #29.5, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 5 as #29.6, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 6 as #29.7, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 7 as #29.8, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 8 as #29.9, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 9 as #29.10, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  
Log from Mon Nov 17 16:44:16 2025UCSF ChimeraX version: 1.8 (2024-06-10)  
© 2016-2024 Regents of the University of California. All rights reserved.  

> open C:\\\Users\\\David\\\Documents\\\lab\\\Berndsen\\\EatA\\\AAA_final-
> sessions\\\all-maps-aligned_Fig4-edit.cxs

Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc as #1, grid size
320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc as #2, grid size
320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc as #3, grid size
320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc as #5, grid size
320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc as #6, grid size
320,320,320, pixel 0.938, shown at level 0.152, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian as #13, grid size 356,356,356,
pixel 0.86, shown at level 5.72, step 1, values float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian as #14,
grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1, values
float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 0 as #18.1, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 1 as #18.2, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 2 as #18.3, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 3 as #18.4, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 4 as #18.5, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 5 as #18.6, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 6 as #18.7, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 7 as #18.8, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 8 as #18.9, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 9 as #18.10, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 10 as #18.11, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 0 as #20.1, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 1 as #20.2, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 2 as #20.3, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 3 as #20.4, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 4 as #20.5, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 5 as #20.6, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 6 as #20.7, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 7 as #20.8, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 8 as #20.9, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 9 as #20.10, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 10 as #20.11, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 0 as #17.1, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 1 as #17.2, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 2 as #17.3, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 3 as #17.4, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 4 as #17.5, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 5 as #17.6, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 6 as #17.7, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 7 as #17.8, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 8 as #17.9, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 9 as #17.10, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 10 as #17.11, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 0 as #15.1, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 1 as #15.2, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 2 as #15.3, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 3 as #15.4, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 4 as #15.5, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 5 as #15.6, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 6 as #15.7, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 7 as #15.8, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 8 as #15.9, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 0 as #19.1, grid size 356,356,356,
pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 1 as #19.2, grid size 356,356,356,
pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 2 as #19.3, grid size 356,356,356,
pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 3 as #19.4, grid size 356,356,356,
pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 4 as #19.5, grid size 356,356,356,
pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 5 as #19.6, grid size 356,356,356,
pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 6 as #19.7, grid size 356,356,356,
pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 7 as #19.8, grid size 356,356,356,
pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 8 as #19.9, grid size 356,356,356,
pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 9 as #19.10, grid size
356,356,356, pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 10 as #19.11, grid size
356,356,356, pixel 0.86, shown at level 5.72, step 1, values float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 0 as #21.1,
grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1, values
float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 1 as #21.2,
grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1, values
float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 2 as #21.3,
grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1, values
float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 3 as #21.4,
grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1, values
float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 4 as #21.5,
grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1, values
float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 5 as #21.6,
grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1, values
float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 6 as #21.7,
grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1, values
float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 7 as #21.8,
grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1, values
float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 8 as #21.9,
grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1, values
float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 9 as
#21.10, grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1,
values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 as #4, grid size 356,356,356,
pixel 0.86, shown at level 11, step 1, values float32  
Opened cryosparc_P6_J1626_007_volume_map_sharp.mrc as #24, grid size
356,356,356, pixel 0.86, shown at level 0.0747, step 1, values float32  
Opened cryosparc_P6_J1599_004_volume_map_sharp_resampled.mrc as #25, grid size
356,356,356, pixel 0.86, shown at level 0.225, step 1, values float32  
Opened cryosparc_P6_J1295_002_volume_map_sharp_resampled.mrc as #26, grid size
356,356,356, pixel 0.86, shown at level 0.229, step 1, values float32  
Log from Sun Nov 16 18:26:26 2025UCSF ChimeraX version: 1.8 (2024-06-10)  
© 2016-2024 Regents of the University of California. All rights reserved.  

> open C:\\\Users\\\David\\\Documents\\\lab\\\Berndsen\\\EatA\\\AAA_final-
> sessions\\\all-maps-aligned_Fig4-edit.cxs

restore_snapshot for "Volume" returned None  

restore_snapshot for "VolumeSurface" returned None  

Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc as #1, grid size
320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc as #2, grid size
320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc as #3, grid size
320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc as #5, grid size
320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc as #6, grid size
320,320,320, pixel 0.938, shown at level 0.152, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian as #13, grid size 356,356,356,
pixel 0.86, shown at level 5.72, step 1, values float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian as #14,
grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1, values
float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 0 as #18.1, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 1 as #18.2, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 2 as #18.3, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 3 as #18.4, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 4 as #18.5, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 5 as #18.6, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 6 as #18.7, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 7 as #18.8, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 8 as #18.9, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 9 as #18.10, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc 10 as #18.11, grid
size 320,320,320, pixel 0.928, shown at level 1.09, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 0 as #20.1, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 1 as #20.2, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 2 as #20.3, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 3 as #20.4, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 4 as #20.5, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 5 as #20.6, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 6 as #20.7, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 7 as #20.8, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 8 as #20.9, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 9 as #20.10, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc 10 as #20.11, grid
size 320,320,320, pixel 0.938, shown at level 0.192, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 0 as #17.1, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 1 as #17.2, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 2 as #17.3, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 3 as #17.4, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 4 as #17.5, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 5 as #17.6, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 6 as #17.7, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 7 as #17.8, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 8 as #17.9, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 9 as #17.10, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc 10 as #17.11, grid
size 320,320,320, pixel 0.928, shown at level 1.13, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 0 as #15.1, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 1 as #15.2, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 2 as #15.3, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 3 as #15.4, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 4 as #15.5, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 5 as #15.6, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 6 as #15.7, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 7 as #15.8, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc 8 as #15.9, grid
size 320,320,320, pixel 0.928, shown at level 0.642, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 0 as #19.1, grid size 356,356,356,
pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 1 as #19.2, grid size 356,356,356,
pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 2 as #19.3, grid size 356,356,356,
pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 3 as #19.4, grid size 356,356,356,
pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 4 as #19.5, grid size 356,356,356,
pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 5 as #19.6, grid size 356,356,356,
pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 6 as #19.7, grid size 356,356,356,
pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 7 as #19.8, grid size 356,356,356,
pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 8 as #19.9, grid size 356,356,356,
pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 9 as #19.10, grid size
356,356,356, pixel 0.86, shown at level 5.72, step 1, values float32  
Opened EatA-G12_composite_map.ccp4 gaussian 10 as #19.11, grid size
356,356,356, pixel 0.86, shown at level 5.72, step 1, values float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 0 as #21.1,
grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1, values
float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 1 as #21.2,
grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1, values
float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 2 as #21.3,
grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1, values
float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 3 as #21.4,
grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1, values
float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 4 as #21.5,
grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1, values
float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 5 as #21.6,
grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1, values
float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 6 as #21.7,
grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1, values
float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 7 as #21.8,
grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1, values
float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 8 as #21.9,
grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1, values
float32  
Opened Pic-40_cryosparc_P7_J1193_002_volume_map_sharp.mrc gaussian 9 as
#21.10, grid size 320,320,320, pixel 0.938, shown at level 0.0593, step 1,
values float32  

restore_snapshot for "ZoneColor" returned None  

Log from Sun Nov 2 23:30:54 2025UCSF ChimeraX version: 1.8 (2024-06-10)  
© 2016-2024 Regents of the University of California. All rights reserved.  

> open C:/Users/David/Documents/lab/Berndsen/EatA/AAA_final-sessions/all-maps-
> aligned_Fig4.cxs

[deleted to fit within ticket limits]


> ui tool show Matchmaker

QWindowsWindow::setGeometry: Unable to set geometry 640x574+880+428 (frame:
658x621+871+390) on QWidgetWindow/"QDockWidgetClassWindow" on
"\\\\.\DISPLAY1". Resulting geometry: 638x566+881+435 (frame: 656x613+872+397)
margins: 9, 38, 9, 9 minimum size: 486x321 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=655377, y=655406), mintrack=POINT(x=626, y=448)))  

> matchmaker #!22 to #11

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker SepA-Fab40_RSR_real_space_refined_208.pdb, chain A (#11) with EatA-
FabG12_RSR_real_space_refined_013.pdb, chain A (#22), sequence alignment score
= 2568.8  
RMSD between 531 pruned atom pairs is 1.321 angstroms; (across all 745 pairs:
2.371)  
  

> select clear

> fitmap #22 inMap #4

Fit molecule EatA-FabG12_RSR_real_space_refined_013.pdb (#22) to map
composite_map_J1626+J1599+J1295.ccp4 (#4) using 8934 atoms  
average map value = 16.96, steps = 64  
shifted from previous position = 0.164  
rotated from previous position = 0.494 degrees  
atoms outside contour = 2766, contour level = 11  
  
Position of EatA-FabG12_RSR_real_space_refined_013.pdb (#22) relative to
composite_map_J1626+J1599+J1295.ccp4 (#4) coordinates:  
Matrix rotation and translation  
0.99999997 0.00016736 -0.00019720 0.00453544  
-0.00016737 0.99999998 -0.00005185 0.02561694  
0.00019719 0.00005188 0.99999998 -0.03116835  
Axis 0.19660280 -0.74754244 -0.63445065  
Axis point 153.18392184 0.00000000 21.46109238  
Rotation angle (degrees) 0.01511415  
Shift along axis 0.00151670  
  

> select clear

> hide #!22 models

> show #!22 models

> ui tool show "Color Zone"

> color zone #4 near #22 distance 4.84

> volume splitbyzone #4

Opened composite_map_J1626+J1599+J1295.ccp4 0 as #27.1, grid size 356,356,356,
pixel 0.86, shown at level 11, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 1 as #27.2, grid size 356,356,356,
pixel 0.86, shown at level 11, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 2 as #27.3, grid size 356,356,356,
pixel 0.86, shown at level 11, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 3 as #27.4, grid size 356,356,356,
pixel 0.86, shown at level 11, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 4 as #27.5, grid size 356,356,356,
pixel 0.86, shown at level 11, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 5 as #27.6, grid size 356,356,356,
pixel 0.86, shown at level 11, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 6 as #27.7, grid size 356,356,356,
pixel 0.86, shown at level 11, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 7 as #27.8, grid size 356,356,356,
pixel 0.86, shown at level 11, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 8 as #27.9, grid size 356,356,356,
pixel 0.86, shown at level 11, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 9 as #27.10, grid size
356,356,356, pixel 0.86, shown at level 11, step 1, values float32  

> color #27.10 #6ea098b4 models

> color #27.9 #2c514cb4 models

> color #27.8 #ff69b4b4 models

> color #27.7 #ff0000b4 models

> color #27.6 #7dcdd2b4 models

> color #27.5 #ffd700b4 models

> hide #!27.4 models

> show #!27.4 models

> color #27.4 #ffffffb4 models

> color #27.3 #ff00ffb4 models

> color #27.2 #6495edb4 models

> color #27.1 #b2b2b208 models

> color #27.1 #b2b2b2b4 models

> hide #!27.1 models

> show #!27.1 models

> alias licorice car style protein modeh default arrows f xsect oval width 1
> thick 1

> licorice

> select clear

> hide #!27 models

> show #!27 models

> hide #!27.9 models

> hide #!27.10 models

> hide #!27 models

> show #!27 models

> hide #!27.1 models

> show #!27.1 models

> hide #!27.1 models

> show #!27.1 models

> show #!27.9 models

> show #!27.10 models

> graphics silhouettes width 4

> save C:\Users\David/Desktop/new-snaps/test4.png supersample 4 width 3000
> height 2600

> show #!4 models

> hide #!4 models

> volume gaussin #4 sd 1

Expected a density maps specifier or a keyword  

> volume gaussian #4 sDev 1

Opened composite_map_J1626+J1599+J1295.ccp4 gaussian as #28, grid size
356,356,356, pixel 0.86, shown at step 1, values float32  

> hide #!27 models

> volume #28 level 5.995

> show #!27 models

> color #28 #b2b2b2b4 models

> volume #28 level 6.455

> hide #!27 models

> color zone #28 near #22 distance 5.16

> color zone #28 near #22 distance 6.01

> volume splitbyzone #28

Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 0 as #29.1, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 1 as #29.2, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 2 as #29.3, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 3 as #29.4, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 4 as #29.5, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 5 as #29.6, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 6 as #29.7, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 7 as #29.8, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 8 as #29.9, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 9 as #29.10, grid size
356,356,356, pixel 0.86, shown at level 6.45, step 1, values float32  

> color #29.10 #6ea098b4 models

> color #29.9 #2c514cb4 models

> color #29.8 #ff69b4b4 models

> color #29.7 #ff0000b4 models

> color #29.6 #7dcdd2b4 models

> color #29.5 #ffd700b4 models

> color #29.4 #ffffffb4 models

> color #29.3 #ff00ffb4 models

> color #29.2 #6495edb4 models

> color #29.1 #b2b2b2b4 models

> hide #!29.9 models

> hide #!29.10 models

> show #!29.9 models

> show #!29.10 models

> save C:\Users\David/Desktop/new-snaps/test4.png supersample 4 width 3000
> height 2600

> hide #!29 models

> hide #!22 models

> show #!17 models

> show #!8 models

> save C:\Users\David/Desktop/new-snaps/test5.png supersample 4 width 3000
> height 2600

> hide #!8 models

> hide #!17 models

> show #!4 models

> show #!1 models

> show #!2 models

> hide #!1 models

> hide #!2 models

> hide #!4 models

> show #!23 models

> save C:/Users/David/Documents/lab/Berndsen/EatA/AAA_final-sessions/all-maps-
> aligned_Fig4-edit2.cxs

——— End of log from Mon Nov 17 16:44:16 2025 ———

opened ChimeraX session  

> show #!1 models

> hide #!1 models

> show #!7 models

> hide #!7 models

> show #16 models

> show #!29 models

> hide #!29 models

> show #!29 models

> hide #!29 models

> show #!29 models

> hide #!29 models

> show #!28 models

> hide #!28 models

> show #!22 models

> show #!17 models

> hide #!17 models

> show #!8 models

> show #!9 models

> select #8/A

6266 atoms, 6372 bonds, 8 pseudobonds, 829 residues, 2 models selected  

> select #8/A #9/A #22/A

17860 atoms, 18152 bonds, 37 pseudobonds, 2360 residues, 6 models selected  

> hide sel cartoons

> hide #!23 models

> show #!23 models

> hide #!22 models

> show #!22 models

> show #!28 models

> hide #!28 models

> hide #16 models

> show #16 models

> select #8/B,C #9/B,C #16/A,B #22/B,C

12634 atoms, 12934 bonds, 16 pseudobonds, 1656 residues, 7 models selected  

> show sel surfaces

> transparency (#!8-9,16,22 & sel) 90

> select clear

> show #!28 models

> hide #!28 models

> show #!28 models

> show #!15 models

> hide #!15 models

> hide #!28 models

> show #!17 models

> hide #!16 models

> show #!16 models

> hide #!8 models

> hide #!9 models

> show #!18 models

> show #!28 models

> show #!15 models

> hide #!16 models

> hide #!15 models

> show #10 models

> hide #10 models

> show #!1 models

> show #!16 models

> hide #!16 models

> show #!16 models

> volume mask #1 surfaces #16

Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc masked as #30, grid
size 78,80,66, pixel 0.928, shown at step 1, values float32  

> hide #!28 models

> hide #!18 models

> hide #!17 models

> hide #!16 models

> volume #30 level 0.5583

> hide #!22 models

> show #!22 models

> show #!29 models

> hide #!30 models

> show #!30 models

> hide #!22 models

> show #!22 models

> hide #!30 models

> show #!30 models

> hide #!29 models

> show #!29 models

> hide #!22 models

> show #!22 models

> volume mask #29 surfaces #22

Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 0 masked as #31, grid
size 84,78,83, pixel 0.86, shown at step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 1 masked as #32, grid
size 84,78,83, pixel 0.86, shown at step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 2 masked as #33, grid
size 84,78,83, pixel 0.86, shown at step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 3 masked as #34, grid
size 84,78,83, pixel 0.86, shown at step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 4 masked as #35, grid
size 84,78,83, pixel 0.86, shown at step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 5 masked as #36, grid
size 84,78,83, pixel 0.86, shown at step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 6 masked as #37, grid
size 84,78,83, pixel 0.86, shown at step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 7 masked as #38, grid
size 84,78,83, pixel 0.86, shown at step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 8 masked as #39, grid
size 84,78,83, pixel 0.86, shown at step 1, values float32  
Opened composite_map_J1626+J1599+J1295.ccp4 gaussian 9 masked as #40, grid
size 84,78,83, pixel 0.86, shown at step 1, values float32  

> hide #!22 models

> hide #!31 models

> hide #!32 models

> hide #!33 models

> hide #!34 models

> hide #!35 models

> hide #!36 models

> hide #!37 models

> hide #!38 models

> hide #!39 models

> hide #!40 models

> show #!40 models

> show #!39 models

> close #31-40

> show #!28 models

> volume mask #28 surfaces #22

Opened composite_map_J1626+J1599+J1295.ccp4 gaussian masked as #31, grid size
84,78,83, pixel 0.86, shown at step 1, values float32  

> volume #31 level 5.226

> color #31 #b2b2b2ff models

> select clear

> close #31

> show #!27 models

> hide #!27 models

> show #!4 models

> hide #!4 models

> volume gaussian #4 sDev 2

Opened composite_map_J1626+J1599+J1295.ccp4 gaussian as #31, grid size
356,356,356, pixel 0.86, shown at step 1, values float32  

> volume #31 level 6.321

> volume #31 level 2.736

> volume mask #31 surfaces #22

Opened composite_map_J1626+J1599+J1295.ccp4 gaussian masked as #32, grid size
84,78,83, pixel 0.86, shown at step 1, values float32  

> volume #32 level -0.265

> close #32

> close #31

> open C:/Users/David/Documents/lab/Berndsen/EatA/maps/EatA-FabG12/ACTUAL-
> FINAL-MAP/composite_map_J1626+J1599+J1295.ccp4

Opened composite_map_J1626+J1599+J1295.ccp4 as #31, grid size 356,356,356,
pixel 0.86, shown at level 1.85, step 2, values float32  

> volume #31 step 1

> volume #31 level 17.64

> select clear

> select #31

2 models selected  

> ui mousemode right "rotate selected models"

> view matrix models
> #31,0.99663,-0.081706,0.0071854,10.201,0.081724,0.99665,-0.0023133,-11.764,-0.0069724,0.0028927,0.99997,0.69415

> ui tool show "Fit in Map"

> fitmap #31 inMap #5

Fit map composite_map_J1626+J1599+J1295.ccp4 in map
SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc using 38473 points  
correlation = 0.3863, correlation about mean = 0.09089, overlap = 8.407e+04  
steps = 236, shift = 6.51, angle = 5.32 degrees  
  
Position of composite_map_J1626+J1599+J1295.ccp4 (#31) relative to
SepA-40_cryosparc_P7_J1169_009_volume_map_sharp.mrc (#5) coordinates:  
Matrix rotation and translation  
0.99748278 -0.02886231 0.06476929 -9.64591594  
0.02591303 0.99860886 0.04592236 -15.11779553  
-0.06600461 -0.04412839 0.99684305 13.79263787  
Axis -0.53613713 0.77859142 0.32611713  
Axis point 210.99850006 0.00000000 174.51925630  
Rotation angle (degrees) 4.81743578  
Shift along axis -2.10103676  
  

> select clear

> volume gaussian #31 sDev 2

Opened composite_map_J1626+J1599+J1295.ccp4 gaussian as #32, grid size
356,356,356, pixel 0.86, shown at step 1, values float32  

> volume #32 level 5.17

> show #!22 models

> color #32 #ffb2b2b4 models

> select #22

8934 atoms, 9092 bonds, 28 pseudobonds, 1172 residues, 2 models selected  

> hide sel surfaces

> volume #32 level 3.948

> volume #32 level 1.505

> volume #32 level 0.1262

> volume #32 level 0.5648

> select #22/B,C

3153 atoms, 3227 bonds, 6 pseudobonds, 410 residues, 2 models selected  

> show sel surfaces

> volume mask #32 surfaces #22

Opened composite_map_J1626+J1599+J1295.ccp4 gaussian masked as #33, grid size
84,78,83, pixel 0.86, shown at step 1, values float32  

> select clear

> hide #!22 models

> color #33 #ffb2b2ff models

> volume #33 level 0.1293

> close #33

> volume #32 level 2.288

> close #32

> show #!22 models

> hide #!22 models

> volume mask #31 surfaces #22

Opened composite_map_J1626+J1599+J1295.ccp4 masked as #32, grid size 84,78,83,
pixel 0.86, shown at step 1, values float32  

> hide #!32 models

> show #!32 models

> volume #32 level 12.48

> volume gaussian #32 sDev 1

Opened composite_map_J1626+J1599+J1295.ccp4 masked gaussian as #33, grid size
84,78,83, pixel 0.86, shown at step 1, values float32  

> volume #33 level 4.866

> volume #33 level 6.086

> volume gaussian #32 sDev 2

Opened composite_map_J1626+J1599+J1295.ccp4 masked gaussian as #34, grid size
84,78,83, pixel 0.86, shown at step 1, values float32  

> hide #!33 models

> volume #34 level 2.789

> show #!17 models

> show #!18 models

> show #!7 models

> show #!8 models

> hide #!17 models

> hide #!18 models

> hide #!8 models

> hide #!7 models

> show #!8 models

> show #!9 models

> show #!17 models

> show #!18 models

> hide #!9 models

> hide #!8 models

> show #!2 models

> show #!3 models

> hide #!3 models

> hide #!2 models

> hide #!17 models

> hide #!18 models

> show #!2 models

> hide #!2 models

> show #!3 models

> hide #!3 models

> show #!3 models

> show #!2 models

> show #!8 models

> show #!9 models

> volume mask #2 surfaces #8

Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc masked as #35, grid
size 65,50,86, pixel 0.928, shown at step 1, values float32  

> volume mask #3 surfaces #9

Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc masked as #36, grid
size 65,49,89, pixel 0.928, shown at step 1, values float32  

> hide #!8 models

> hide #!9 models

> select #23

7500 atoms, 7628 bonds, 1006 residues, 1 model selected  

> transparency (#!23 & sel) 90

> select clear

> volume #30 level 0.5205

> volume gaussian #30 sDev 1

Opened EatA-25_cryosparc_P18_J417_007_volume_map_sharp.mrc masked gaussian as
#37, grid size 78,80,66, pixel 0.928, shown at step 1, values float32  

> volume #37 level 0.2599

> volume #37 level 0.3494

> volume #37 level 0.5661

> volume gaussian #35 sDev 1

Opened EatA-15_cryosparc_P7_J1177_008_volume_map_sharp.mrc masked gaussian as
#38, grid size 65,50,86, pixel 0.928, shown at step 1, values float32  

> volume gaussian #36sd 1

Missing or invalid "volumes" argument: only initial part "#36" of atom
specifier valid  

> volume gaussian #36 sDev 1

Opened EatA-40_cryosparc_P7_J1175_008_volume_map_sharp.mrc masked gaussian as
#39, grid size 65,49,89, pixel 0.928, shown at step 1, values float32  

> volume #38 level 0.5776

> volume #39 level 0.7292

> volume #37 level 0.5317

> save C:/Users/David/Documents/lab/Berndsen/EatA/AAA_final-sessions/all-maps-
> aligned_Fig4-edit2.cxs

> volume #38 color #36558f

> volume #39 color #ecb0e1

> select clear

> volume #37 color rebeccapurple

> volume #33 color #2c514c

> volume #33 level 8.306

> ui tool show "Color Zone"

> color zone #33 near #22 distance 5.16

> show #!7 models

> hide #!7 models

> hide #!23 models

> show #!16 models

> show #!23 models

> select #16/B

1616 atoms, 1650 bonds, 211 residues, 1 model selected  

> color (#!16 & sel) #7b5d99ff

> select clear

> hide #!16 models

> color zone #37 near #16 distance 5.57

> color #33 #6ea098ff models

> select clear

> color #37 #7b5d99ff models

> select clear

> volume #33 level 10.09

> save C:/Users/David/Documents/lab/Berndsen/EatA/AAA_final-sessions/all-maps-
> aligned_Fig4-edit2.cxs

——— End of log from Wed Nov 26 13:25:16 2025 ———

opened ChimeraX session  

> hide #!37 models

> hide #!38 models

> hide #!39 models

> hide #!33 models

> show #!7 models

> hide #!7 models

> show #!8 models

> show #!9 models

> show #10 models

> hide #10 models

> show #!11 models

> hide #!11 models

> show #!16 models

> transparency #8-9,16,23#!29 0

> select #8 #9 #16

21560 atoms, 21994 bonds, 25 pseudobonds, 2844 residues, 5 models selected  

> hide sel surfaces

> hide #!23 models

> show #!23 models

> select clear

> open C:/Users/David/Documents/lab/Berndsen/EatA/maps/EatA-FabG12/ACTUAL-
> FINAL-MAP/EatA-FabG12_RSR_real_space_refined_227-coot-0.pdb

Chain information for EatA-FabG12_RSR_real_space_refined_227-coot-0.pdb #40  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
  

> ui tool show Matchmaker

> matchmaker #!40 to #10

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker EatA-FabG12_RSR_real_space_refined_010.pdb, chain A (#10) with
EatA-FabG12_RSR_real_space_refined_227-coot-0.pdb, chain A (#40), sequence
alignment score = 3231.2  
RMSD between 747 pruned atom pairs is 0.372 angstroms; (across all 762 pairs:
0.770)  
  

> licorice

> select #40/A

5781 atoms, 5865 bonds, 22 pseudobonds, 762 residues, 2 models selected  

> hide sel cartoons

> hide sel atoms

> select clear

> select #40/B

1690 atoms, 1735 bonds, 1 pseudobond, 221 residues, 2 models selected  

> color (#!40 & sel) #2c514cff

> select clear

> select #40/C

1572 atoms, 1613 bonds, 209 residues, 1 model selected  

> color sel #6ea098ff

> select clear

> save C:\Users\David/Desktop/high_res_image-COMPLEX.png supersample 4 width
> 3000 height 2200

[Repeated 1 time(s)]

> hide #!40 models

> show #!40 models

> hide #!40 models

> show #!40 models

> save C:\Users\David/Desktop/high_res_image-COMPLEX.png supersample 4 width
> 3000 height 2200

[Repeated 1 time(s)]

> hide #!40 models

> hide #!16 models

> hide #!9 models

> hide #!8 models

> save C:\Users\David/Desktop/high_res_image-5J44.png supersample 4 width 3000
> height 2200

> show #!40 models

> show #!28 models

> hide #!28 models

> show #!29.1 models

> show #!29.2 models

> show #!29.3 models

> show #!29.4 models

> show #!29.5 models

> show #!29.6 models

> show #!29.7 models

> show #!29.8 models

> show #!29.9 models

> show #!29.10 models

> hide #!23 models

> select #40/A

5781 atoms, 5865 bonds, 22 pseudobonds, 762 residues, 2 models selected  

> show sel cartoons

> select #40/A

5781 atoms, 5865 bonds, 22 pseudobonds, 762 residues, 2 models selected  

> color (#!40 & sel) #ffffffff

> select #40/A:1-256

1600 atoms, 1633 bonds, 6 pseudobonds, 210 residues, 2 models selected  

> color (#!40 & sel) cornflower blue

> select clear

> select #40/A:78,106,211

24 atoms, 22 bonds, 3 residues, 1 model selected  

> color sel magenta

> select clear

> select #40/A:481-560

151 atoms, 149 bonds, 1 pseudobond, 19 residues, 2 models selected  

> ui tool show "Color Actions"

> color sel gold

[Repeated 1 time(s)]

> select clear

> select #40/A:611-629

117 atoms, 120 bonds, 1 pseudobond, 15 residues, 2 models selected  

> ui tool show "Color Actions"

> color (#!40 & sel) #7dcdd2ff

> select #40/A:669-699

185 atoms, 182 bonds, 3 pseudobonds, 27 residues, 2 models selected  

> color (#!40 & sel) #ff0000ff

> select clear

> hide #!29.10 models

> hide #!29.9 models

> ui tool show "Side View"

> save C:\Users\David/Desktop/high_res_image-COMPLEX-ZOOM.png supersample 4
> width 3000 height 2200

[Repeated 1 time(s)]

> save C:/Users/David/Documents/lab/Berndsen/EatA/AAA_final-sessions/all-maps-
> aligned_Fig4-edit2.cxs

——— End of log from Wed Dec 10 17:24:00 2025 ———

opened ChimeraX session  

> view

> hide #!29 models

> show #!29 models

> hide #!29 models

> hide #!40 models

> show #!7 models

> show #!8 models

> show #!9 models

> show #10 models

> show #!11 models

> show #!12 models

> show #!39 models

> hide #!39 models

> hide #10 models

> show #10 models

> show #!40 models

> show #!1 models

> hide #!1 models

> close #10

> show #!1 models

> show #!2 models

> show #!3 models

> show #!4 models

> hide #!4 models

> hide #!3 models

> hide #!2 models

> hide #!1 models

> show #!13 models

> hide #!13 models

> show #!15 models

> hide #!15 models

> show #!16 models

> hide #!16 models

> show #!16 models

> hide #!16 models

> show #!17 models

> hide #!17 models

> show #!19 models

> hide #!19 models

> show #!19 models

> hide #!19 models

> show #!20 models

> hide #!20 models

> show #!23 models

> hide #!23 models

> show #!24 models

> hide #!24 models

> show #!24 models

> hide #!24 models

> show #!25 models

> hide #!25 models

> show #!26 models

> hide #!26 models

> show #!27 models

> hide #!27 models

> rename #1 id #50

> rename #2 #8 #17 #35 id #1

> hide #!1.2 models

> show #!1.2 models

> hide #!7 models

> hide #!9 models

> hide #!11 models

> hide #!12 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1 models

> show #!1 models

> show #!1.1 models

> hide #!1.1 models

> rename #3 #9 #18 #36 #39 id #2

> show #!2.4 models

> hide #!2.4 models

> show #!2.5 models

> hide #!2.5 models

> show #!2.5 models

> hide #!2.5 models

> show #!2.4 models

> hide #!2.4 models

> show #!2.3 models

> hide #!2.3 models

> show #!2.3 models

> hide #!2.3 models

> show #!2.2 models

> hide #!2.2 models

> show #!2.1 models

> hide #!2.1 models

> rename #7 #15 #16 #30 #37 #50 id #3

> show #!3.1 models

> show #!3.2 models

> hide #!3.2 models

> show #!3.3 models

> hide #!3.3 models

> show #!3.4 models

> hide #!3.4 models

> show #!3.3 models

> hide #!3.3 models

> show #!3.5 models

> hide #!3.5 models

> rename #4 id #50

> show #!50 models

> close #22

> rename #27-34 id #51

> rename #51.1 id #52

> rename #51.2 id #53

> rename #51.3 id #54

> rename #51.4 id #55

> rename #51.5 id #56

> rename #51.6 id #57

> rename #51.7 id #58

> close #51

> rename #50 #40 #13 #19 #24 #25 #26 #52-58 id #4

> hide #!4.1 models

> hide #!4.2 models

> show #!4.2 models

> show #!4.3 models

> hide #!4.3 models

> show #!4.4 models

> hide #!4.4 models

> show #!4.5 models

> hide #!4.5 models

> show #!4.6 models

> hide #!4.6 models

> show #!4.7 models

> hide #!4.7 models

> show #!4.8 models

> hide #!4.8 models

> show #!4.9 models

> hide #!4.9 models

> show #!4.10 models

> hide #!4.10 models

> show #!4.11 models

> hide #!4.11 models

> show #!4.12 models

> hide #!4.12 models

> show #!4.13 models

> hide #!4.13 models

> show #!4.14 models

> hide #!4.14 models

> show #!2.2 models

> rename #5 id #50

> rename #50 #11 #20 id #5

> show #!5.2 models

> show #!38 models

> hide #!38 models

> close #38

> rename #6 id #50

> rename #50 #12 #14 #21 id #6

> show #!6.1 models

> hide #!6.1 models

> show #!6.2 models

> show #!23 models

> hide #!23 models

> rename #1 EatA-15

> rename #2 EatA-40

> rename #3 EatA-25

> rename #4 EatA-G12

> rename #5 SepA-40

> rename #6 Pic-40

> rename #23 id #7

> save C:/Users/David/Documents/lab/Berndsen/EatA/AAA_final-sessions/all-maps-
> aligned_1.cxs includeMaps true

——— End of log from Wed Jan 7 13:06:56 2026 ———

opened ChimeraX session  

> close #1.1

> close #1.3-4

> close #2.1

> close #2.3-5

> close #3.2-6

> close #4.1

> close #4.3-14

> close #5.1

> close #5.3

> close #6.1

> close #6.3-4

> show #!7 models

> hide #!7 models

> select #2/A

5813 atoms, 5915 bonds, 7 pseudobonds, 769 residues, 2 models selected  

> hide #!2 models

> show #!2 models

> hide #!3 models

> hide #!4 models

> hide #!1 models

> show sel atoms

> hide sel atoms

> show sel cartoons

> select clear

> hide #!2.2 models

> show #!2.2 models

> hide #!2 models

> hide #!5.2 models

> show #!5.2 models

> show #!2 models

> select #5/A

6163 atoms, 6259 bonds, 6 pseudobonds, 830 residues, 2 models selected  

> show sel cartoons

> select clear

> hide #!5.2 models

> hide #!2 models

> select #6/A

5739 atoms, 5840 bonds, 14 pseudobonds, 828 residues, 2 models selected  

> show sel cartoons

> select clear

> show #!5.2 models

> show #!2 models

> select clear

> select #2/A

5813 atoms, 5915 bonds, 7 pseudobonds, 769 residues, 2 models selected  

> ui tool show Matchmaker

> select #2/A #5/A #6/A

17715 atoms, 18014 bonds, 27 pseudobonds, 2427 residues, 6 models selected  

> matchmaker #!5.2#!6.2 & sel to #2.2 & sel

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker EatA-Fab40_RSR_real_space_refined_206.pdb, chain A (#2.2) with
SepA-Fab40_RSR_real_space_refined_208.pdb, chain A (#5.2), sequence alignment
score = 3055  
RMSD between 762 pruned atom pairs is 0.490 angstroms; (across all 768 pairs:
1.177)  
  
Matchmaker EatA-Fab40_RSR_real_space_refined_206.pdb, chain A (#2.2) with Pic-
Fab40_RSR_real_space_refined_199.pdb, chain A (#6.2), sequence alignment score
= 1978.2  
RMSD between 643 pruned atom pairs is 0.933 angstroms; (across all 689 pairs:
1.962)  
  

> select clear

> save C:/Users/David/Documents/lab/Berndsen/EatA/AAA_final-sessions/all-
> models.cxs includeMaps true

——— End of log from Wed Jan 7 13:23:09 2026 ———

> view name session-start

opened ChimeraX session  
Desktop color scheme is dark  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 98, in _expose_event  
self.status(self._last_message, self._last_color)  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 164, in status  
r.draw_background()  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1238, in draw_background  
GL.glClear(flags)  
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError  
OpenGL.error.GLError: GLError(  
err = 1286,  
description = b'invalid framebuffer operation',  
baseOperation = glClear,  
cArguments = (16640,)  
)  
  
OpenGL.error.GLError: GLError(  
err = 1286,  
description = b'invalid framebuffer operation',  
baseOperation = glClear,  
cArguments = (16640,)  
)  
  
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 98, in _expose_event  
self.status(self._last_message, self._last_color)  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 164, in status  
r.draw_background()  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1238, in draw_background  
GL.glClear(flags)  
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError  
OpenGL.error.GLError: GLError(  
err = 1286,  
description = b'invalid framebuffer operation',  
baseOperation = glClear,  
cArguments = (16640,)  
)  
  
OpenGL.error.GLError: GLError(  
err = 1286,  
description = b'invalid framebuffer operation',  
baseOperation = glClear,  
cArguments = (16640,)  
)  
  
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 98, in _expose_event  
self.status(self._last_message, self._last_color)  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 164, in status  
r.draw_background()  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1238, in draw_background  
GL.glClear(flags)  
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError  
OpenGL.error.GLError: GLError(  
err = 1286,  
description = b'invalid framebuffer operation',  
baseOperation = glClear,  
cArguments = (16640,)  
)  
  
OpenGL.error.GLError: GLError(  
err = 1286,  
description = b'invalid framebuffer operation',  
baseOperation = glClear,  
cArguments = (16640,)  
)  
  
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError  
  
See log for complete Python traceback.  
  




OpenGL version: 4.1 Metal - 90.5
OpenGL renderer: Apple M2 Pro
OpenGL vendor: Apple

Python: 3.11.4
Locale: en_US.UTF-8
Qt version: PyQt6 6.8.1, Qt 6.8.2
Qt runtime version: 6.8.2
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: Mac14,9
      Model Number: Z17H000CGLL/A
      Chip: Apple M2 Pro
      Total Number of Cores: 12 (8 performance and 4 efficiency)
      Memory: 32 GB
      System Firmware Version: 13822.61.10
      OS Loader Version: 13822.61.10

Software:

    System Software Overview:

      System Version: macOS 26.2 (25C56)
      Kernel Version: Darwin 25.2.0
      Time since boot: 7 days, 9 hours, 55 minutes

Graphics/Displays:

    Apple M2 Pro:

      Chipset Model: Apple M2 Pro
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 19
      Vendor: Apple (0x106b)
      Metal Support: Metal 4
      Displays:
        Studio Display:
          Display Type: Retina LCD
          Resolution: 5120 x 2880 Retina
          Display Serial Number: V5K6P7RJ2X
          Display Firmware Version: Version 17.0 (Build 21A329)
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes
        Studio Display:
          Display Type: Retina LCD
          Resolution: 5120 x 2880 Retina
          Display Serial Number: NNQ2Q230MJ
          Display Firmware Version: Version 17.0 (Build 21A329)
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes


Installed Packages:
    alabaster: 1.0.0
    appdirs: 1.4.4
    appnope: 0.1.4
    asttokens: 3.0.0
    auditwheel: 6.4.0
    babel: 2.17.0
    beautifulsoup4: 4.13.3
    blockdiag: 3.0.0
    blosc2: 3.5.0
    build: 1.2.2.post1
    certifi: 2023.11.17
    cftime: 1.6.4.post1
    charset-normalizer: 3.4.2
    ChimeraX-AddCharge: 1.5.19
    ChimeraX-AddH: 2.2.7
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.6.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.20.2
    ChimeraX-AlphaFold: 1.0.1
    ChimeraX-AltlocExplorer: 1.1.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Aniso: 1.1.4
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.60.7
    ChimeraX-AtomicLibrary: 14.1.18
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.3
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 3.0.0
    ChimeraX-Boltz: 1.0
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.2
    ChimeraX-BuildStructure: 2.13.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.5.1
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.5
    ChimeraX-ChemGroup: 2.0.2
    ChimeraX-Clashes: 2.3
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.8
    ChimeraX-CommandLine: 1.3
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.10
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.5
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.4
    ChimeraX-Dicom: 1.2.7
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.4
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.4.1
    ChimeraX-Hbonds: 2.5.1
    ChimeraX-Help: 1.3
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.3
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-KVFinder: 1.6.2
    ChimeraX-Label: 1.1.14
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.2
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.3
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.2.2
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.10.1
    ChimeraX-MedicalToolbar: 1.1
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.16
    ChimeraX-MMTF: 2.2
    ChimeraX-ModelArchive: 1.0
    ChimeraX-Modeller: 1.5.19
    ChimeraX-ModelPanel: 1.5.1
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-MutationScores: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.14.1
    ChimeraX-OrthoPick: 1.0.1
    ChimeraX-PDB: 2.7.10
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.3
    ChimeraX-ProfileGrids: 1.1.2
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.6.3
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.3.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.3
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.5.7
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.17.1
    ChimeraX-Shape: 1.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.2.1
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-SimilarStructures: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.19.1
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5.2
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.2.3
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.45.2
    ChimeraX-Umap: 1.0
    ChimeraX-uniprot: 2.3.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.4.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.5
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.2
    contourpy: 1.3.2
    coverage: 7.9.1
    cxservices: 1.2.3
    cycler: 0.12.1
    Cython: 3.0.12
    debugpy: 1.8.14
    decorator: 5.2.1
    docutils: 0.21.2
    executing: 2.2.0
    filelock: 3.18.0
    fonttools: 4.58.4
    funcparserlib: 2.0.0a0
    glfw: 2.9.0
    grako: 3.16.5
    h5py: 3.14.0
    html2text: 2024.2.26
    idna: 3.10
    ihm: 2.2
    imagecodecs: 2024.6.1
    imagesize: 1.4.1
    iniconfig: 2.1.0
    ipykernel: 6.29.5
    ipython: 8.26.0
    ipywidgets: 8.1.7
    jedi: 0.19.1
    Jinja2: 3.1.6
    jupyter_client: 8.6.3
    jupyter_core: 5.8.1
    jupyterlab_widgets: 3.0.15
    kiwisolver: 1.4.8
    line_profiler: 4.2.0
    lxml: 5.3.1
    lz4: 4.4.4
    MarkupSafe: 3.0.2
    matplotlib: 3.10.1
    matplotlib-inline: 0.1.7
    msgpack: 1.1.0
    ndindex: 1.10.0
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.11.0
    numpy: 1.26.4
    OpenMM: 8.2.0
    openvr: 1.26.701
    packaging: 24.2
    ParmEd: 4.2.2
    parso: 0.8.4
    pep517: 0.13.1
    pexpect: 4.9.0
    pickleshare: 0.7.5
    pillow: 10.4.0
    pip: 25.0.1
    pkginfo: 1.11.1
    platformdirs: 4.3.8
    pluggy: 1.6.0
    prompt_toolkit: 3.0.51
    psutil: 7.0.0
    ptyprocess: 0.7.0
    pure_eval: 0.2.3
    py-cpuinfo: 9.0.0
    pycollada: 0.8
    pydicom: 2.4.4
    pyelftools: 0.32
    Pygments: 2.18.0
    pynmrstar: 3.3.5
    pynrrd: 1.0.0
    PyOpenGL: 3.1.9
    PyOpenGL-accelerate: 3.1.9
    pyopenxr: 1.1.4501
    pyparsing: 3.2.3
    pyproject_hooks: 1.2.0
    PyQt6-commercial: 6.8.1
    PyQt6-Qt6: 6.8.2
    PyQt6-WebEngine-commercial: 6.8.0
    PyQt6-WebEngine-Qt6: 6.8.2
    PyQt6_sip: 13.10.0
    pytest: 8.4.1
    pytest-cov: 6.2.1
    python-dateutil: 2.9.0.post0
    pytz: 2025.2
    pyzmq: 27.0.0
    qtconsole: 5.5.2
    QtPy: 2.4.3
    qtshim: 1.1
    RandomWords: 0.4.0
    requests: 2.32.3
    roman-numerals-py: 3.1.0
    scipy: 1.14.0
    setuptools: 78.1.0
    sfftk-rw: 0.8.1
    six: 1.16.0
    snowballstemmer: 3.0.1
    sortedcontainers: 2.4.0
    soupsieve: 2.7
    Sphinx: 8.2.3
    sphinx-autodoc-typehints: 3.1.0
    sphinxcontrib-applehelp: 2.0.0
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 2.0.0
    sphinxcontrib-htmlhelp: 2.1.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 2.0.0
    sphinxcontrib-serializinghtml: 2.0.0
    stack-data: 0.6.3
    superqt: 0.7.1
    tables: 3.10.2
    tcia_utils: 1.5.1
    tifffile: 2025.3.13
    tinyarray: 1.2.4
    tornado: 6.5.1
    traitlets: 5.14.3
    typing_extensions: 4.14.0
    tzdata: 2025.2
    urllib3: 2.5.0
    wcwidth: 0.2.13
    webcolors: 24.11.1
    wheel: 0.45.1
    wheel-filename: 1.4.2
    widgetsnbextension: 4.0.14

Change History (1)

comment:1 by Eric Pettersen, 3 weeks ago

Component:	Unassigned → Graphics
Description:	modified (diff)
Owner:	set to Tom Goddard
Platform:	→ all
Project:	→ ChimeraX
Status:	new → assigned
Summary:	ChimeraX bug report submission → glClear: invalid framebuffer operation on statusbar expose

Reported by James Fleckenstein

Note: See TracTickets for help on using tickets.

Download in other formats: