id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 20268 glDrawBuffer: invalid operation brandon.scott@… Tom Goddard "{{{ The following bug report has been submitted: Platform: Linux-5.14.0-611.49.1.el9_7.x86_64-x86_64-with-glibc2.34 ChimeraX Version: 1.12.dev202605040019 (2026-05-04 00:19:19 UTC) Description Opening demo data 6ts0. I am running chimerax on an amazon dcv client. Log: Startup Messages --- warning | GBM is not supported with the current configuration. Fallback to Vulkan rendering in Chromium. UCSF ChimeraX version: 1.12.dev202605040019 (2026-05-04) © 2016-2026 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open 6ts0 format mmcif fromDatabase pdbe_bio Summary of feedback from opening 6ts0 fetched from pdbe_bio --- warnings | Missing or incorrect sequence information. Inferred polymer connectivity. Atom H is not in the residue template for SER /A:6 Atom H is not in the residue template for SER /AA:6 Atom H is not in the residue template for SER /AB:6 Atom H is not in the residue template for SER /AC:6 Atom H is not in the residue template for SER /AD:6 4 messages similar to the above omitted Too many hydrogens missing from residue template(s) to warn about notes | Combining 4 symmetry atoms into HOH /MA:415 O Combining 4 symmetry atoms into FE /FA:205 FE Combining 4 symmetry atoms into HOH /MA:318 O Combining 3 symmetry atoms into FE /HM:207 FE Combining 3 symmetry atoms into FE /HA:207 FE Combining 3 symmetry atoms into FE /HB:207 FE Combining 3 symmetry atoms into FE /HO:207 FE Combining 3 symmetry atoms into FE /EM:204 FE 11 messages similar to the above omitted Combining 4 symmetry atoms into HOH /ME:415 O Combining 4 symmetry atoms into FE /FE:205 FE Combining 4 symmetry atoms into HOH /ME:318 O Combining 4 symmetry atoms into HOH /MI:415 O Combining 4 symmetry atoms into FE /FI:205 FE 7 messages similar to the above omitted Combining 3 symmetry atoms into HOH /MC:449 O Combining 3 symmetry atoms into HOH /MN:449 O Combining 3 symmetry atoms into HOH /ML:449 O Combining 3 symmetry atoms into HOH /M:449 O Combining 3 symmetry atoms into FE /JC:209 FE 11 messages similar to the above omitted Combining 4 symmetry atoms into HOH /M:318 O Combining 4 symmetry atoms into FE /F:205 FE Combining 4 symmetry atoms into HOH /M:415 O 6ts0 bioassembly 1 title: Crystal structure of human L ferritin (HuLf) triple variant E60A-E61A-E64A Fe(III)-loaded for 30 minutes [more info...] Chain information for 6ts0 bioassembly 1 #1 --- Chain | Description A AA AB AC AD AE AF AG AH AI AJ AK AL AM AN AO AP AQ AR AS AT AU AV AW | Ferritin light chain Non-standard residues in 6ts0 bioassembly 1 #1 --- CD — (CD) FE — (FE) O — (O) 6ts0 bioassembly 1 mmCIF Assemblies --- 1| author_defined_assembly 840 atoms have alternate locations. Control/examine alternate locations with Altloc Explorer [start tool...] or the altlocs command. Opened 1 biological assemblies for 6ts0 An error occurred in drawing the scene. Redrawing graphics is now stopped to avoid a continuous stream of error messages. To restart graphics use the command ""graphics restart"" after changing the settings that caused the error. GLError( err = 1282, description = b'invalid operation', baseOperation = glDrawBuffer, cArguments = (GL_NONE,) ) Traceback (most recent call last): File ""/home/SDSMT.LOCAL/bscott/software/chimerax/usr/libexec/UCSF-ChimeraX- daily/lib/python3.11/site-packages/chimerax/core/updateloop.py"", line 84, in draw_new_frame view.draw(check_for_changes = False) File ""/home/SDSMT.LOCAL/bscott/software/chimerax/usr/libexec/UCSF-ChimeraX- daily/lib/python3.11/site-packages/chimerax/graphics/view.py"", line 188, in draw self._draw_scene(camera, drawings) File ""/home/SDSMT.LOCAL/bscott/software/chimerax/usr/libexec/UCSF-ChimeraX- daily/lib/python3.11/site-packages/chimerax/graphics/view.py"", line 227, in _draw_scene shadow, multishadow = self._compute_shadowmaps(opaque_drawings, transparent_drawings, camera) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""/home/SDSMT.LOCAL/bscott/software/chimerax/usr/libexec/UCSF-ChimeraX- daily/lib/python3.11/site-packages/chimerax/graphics/view.py"", line 634, in _compute_shadowmaps multishadow_enabled = r.multishadow.use_multishadow_map(shadow_drawings) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""/home/SDSMT.LOCAL/bscott/software/chimerax/usr/libexec/UCSF-ChimeraX- daily/lib/python3.11/site-packages/chimerax/graphics/opengl.py"", line 1722, in use_multishadow_map self._start_rendering_multishadowmap(center, radius, size) File ""/home/SDSMT.LOCAL/bscott/software/chimerax/usr/libexec/UCSF-ChimeraX- daily/lib/python3.11/site-packages/chimerax/graphics/opengl.py"", line 1805, in _start_rendering_multishadowmap fb = r.start_depth_render(self._multishadow_map_framebuffer, ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""/home/SDSMT.LOCAL/bscott/software/chimerax/usr/libexec/UCSF-ChimeraX- daily/lib/python3.11/site-packages/chimerax/graphics/opengl.py"", line 1400, in start_depth_render if not fb.activate(): ^^^^^^^^^^^^^ File ""/home/SDSMT.LOCAL/bscott/software/chimerax/usr/libexec/UCSF-ChimeraX- daily/lib/python3.11/site-packages/chimerax/graphics/opengl.py"", line 2410, in activate fbo = self.framebuffer_id ^^^^^^^^^^^^^^^^^^^ File ""/home/SDSMT.LOCAL/bscott/software/chimerax/usr/libexec/UCSF-ChimeraX- daily/lib/python3.11/site-packages/chimerax/graphics/opengl.py"", line 2406, in framebuffer_id self._fbo = fbo = self._create_framebuffer() ^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""/home/SDSMT.LOCAL/bscott/software/chimerax/usr/libexec/UCSF-ChimeraX- daily/lib/python3.11/site-packages/chimerax/graphics/opengl.py"", line 2242, in _create_framebuffer fbo = self._create_fbo(self.color_texture or self._color_rb, ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""/home/SDSMT.LOCAL/bscott/software/chimerax/usr/libexec/UCSF-ChimeraX- daily/lib/python3.11/site-packages/chimerax/graphics/opengl.py"", line 2270, in _create_fbo GL.glDrawBuffer(GL.GL_NONE) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1282, description = b'invalid operation', baseOperation = glDrawBuffer, cArguments = (GL_NONE,) ) Exception ignored in: Traceback (most recent call last): File ""/home/SDSMT.LOCAL/bscott/software/chimerax/usr/libexec/UCSF-ChimeraX- daily/lib/python3.11/site-packages/chimerax/graphics/opengl.py"", line 2319, in __del__ raise OpenGLError('OpenGL framebuffer ""%s"" was not deleted before graphics.Framebuffer destroyed' chimerax.graphics.opengl.OpenGLError: OpenGL framebuffer ""depth map"" was not deleted before graphics.Framebuffer destroyed Exception ignored in: Traceback (most recent call last): File ""/home/SDSMT.LOCAL/bscott/software/chimerax/usr/libexec/UCSF-ChimeraX- daily/lib/python3.11/site-packages/chimerax/graphics/opengl.py"", line 3179, in __del__ raise OpenGLError('OpenGL texture was not deleted before graphics.Texture destroyed') chimerax.graphics.opengl.OpenGLError: OpenGL texture was not deleted before graphics.Texture destroyed > graphics driver OpenGL version: 3.3.0 NVIDIA 580.159.03 OpenGL renderer: NVIDIA RTX PRO 6000 Blackwell Server Edition/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation > close # Expected a models specifier or a keyword > lighting soft > lighting simple > graphics restart An error occurred in drawing the scene. Redrawing graphics is now stopped to avoid a continuous stream of error messages. To restart graphics use the command ""graphics restart"" after changing the settings that caused the error. GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) Traceback (most recent call last): File ""/home/SDSMT.LOCAL/bscott/software/chimerax/usr/libexec/UCSF-ChimeraX- daily/lib/python3.11/site-packages/chimerax/core/updateloop.py"", line 84, in draw_new_frame view.draw(check_for_changes = False) File ""/home/SDSMT.LOCAL/bscott/software/chimerax/usr/libexec/UCSF-ChimeraX- daily/lib/python3.11/site-packages/chimerax/graphics/view.py"", line 188, in draw self._draw_scene(camera, drawings) File ""/home/SDSMT.LOCAL/bscott/software/chimerax/usr/libexec/UCSF-ChimeraX- daily/lib/python3.11/site-packages/chimerax/graphics/view.py"", line 239, in _draw_scene camera.draw_background(vnum, r) File ""/home/SDSMT.LOCAL/bscott/software/chimerax/usr/libexec/UCSF-ChimeraX- daily/lib/python3.11/site-packages/chimerax/graphics/camera.py"", line 195, in draw_background render.draw_background() File ""/home/SDSMT.LOCAL/bscott/software/chimerax/usr/libexec/UCSF-ChimeraX- daily/lib/python3.11/site-packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) > lighting simple > graphics restart An error occurred in drawing the scene. Redrawing graphics is now stopped to avoid a continuous stream of error messages. To restart graphics use the command ""graphics restart"" after changing the settings that caused the error. GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) Traceback (most recent call last): File ""/home/SDSMT.LOCAL/bscott/software/chimerax/usr/libexec/UCSF-ChimeraX- daily/lib/python3.11/site-packages/chimerax/core/updateloop.py"", line 84, in draw_new_frame view.draw(check_for_changes = False) File ""/home/SDSMT.LOCAL/bscott/software/chimerax/usr/libexec/UCSF-ChimeraX- daily/lib/python3.11/site-packages/chimerax/graphics/view.py"", line 188, in draw self._draw_scene(camera, drawings) File ""/home/SDSMT.LOCAL/bscott/software/chimerax/usr/libexec/UCSF-ChimeraX- daily/lib/python3.11/site-packages/chimerax/graphics/view.py"", line 239, in _draw_scene camera.draw_background(vnum, r) File ""/home/SDSMT.LOCAL/bscott/software/chimerax/usr/libexec/UCSF-ChimeraX- daily/lib/python3.11/site-packages/chimerax/graphics/camera.py"", line 195, in draw_background render.draw_background() File ""/home/SDSMT.LOCAL/bscott/software/chimerax/usr/libexec/UCSF-ChimeraX- daily/lib/python3.11/site-packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL version: 3.3.0 NVIDIA 580.159.03 OpenGL renderer: NVIDIA RTX PRO 6000 Blackwell Server Edition/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation Python: 3.11.13 Locale: en_US.UTF-8 Qt version: PyQt6 6.10.2, Qt 6.10.0 Qt runtime version: 6.10.1 Qt platform: xcb XDG_SESSION_TYPE=x11 DESKTOP_SESSION= XDG_SESSION_DESKTOP= XDG_CURRENT_DESKTOP=GNOME DCV_GL_DISPLAY=:0.0 DISPLAY=:2 VGL_DISPLAY=egl Manufacturer: Dell Inc. Model: PowerEdge R770 OS: Red Hat Enterprise Linux 9.7 Architecture: 64bit ELF Virtual Machine: none CPU: 96 Intel(R) Xeon(R) 6527P Cache Size: 147456 KB Memory: total used free shared buff/cache available Mem: 503Gi 14Gi 476Gi 55Mi 15Gi 488Gi Swap: 15Gi 74Mi 15Gi Graphics: 0000:3f:00.0 VGA compatible controller [0300]: Matrox Electronics Systems Ltd. Integrated Matrox G200eW3 Graphics Controller [102b:0536] (rev 08) DeviceName: Embedded Video Subsystem: Dell Device [1028:0c65] Installed Packages: accessible-pygments: 0.0.5 aiohappyeyeballs: 2.6.1 aiohttp: 3.13.1 aiosignal: 1.4.0 alabaster: 1.0.0 annotated-types: 0.7.0 anyio: 4.13.0 appdirs: 1.4.4 asttokens: 3.0.1 attrs: 26.1.0 babel: 2.18.0 beautifulsoup4: 4.13.5 blockdiag: 3.0.0 blosc2: 4.1.2 bs4: 0.0.2 build: 1.3.0 certifi: 2026.4.22 cftime: 1.6.5 charset-normalizer: 3.4.7 ChimeraX-AddCharge: 1.5.20 ChimeraX-AddH: 2.2.8 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.6.2 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 3.2 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Animations: 1.0 ChimeraX-Aniso: 1.3.2 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.67.1 ChimeraX-AtomicLibrary: 14.4 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.3 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-Boltz: 1.1 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.2 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.6.0 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4.1 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.5 ChimeraX-ChemGroup: 2.0.2 ChimeraX-Clashes: 2.4 ChimeraX-Cluster: 1.0 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.8 ChimeraX-CommandLine: 1.3.1 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.12.dev202605040019 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.5 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.4 ChimeraX-Dicom: 1.2.7 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.2.1 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5.3 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.4 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.8.2 ChimeraX-Label: 1.5 ChimeraX-LightingGUI: 1.0 ChimeraX-LinuxSupport: 1.0.1 ChimeraX-ListInfo: 1.3.1 ChimeraX-Log: 1.2.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.3 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchAlign: 1.1 ChimeraX-MatchMaker: 2.4 ChimeraX-MCopy: 1.0 ChimeraX-MCPServer: 0.2.0 ChimeraX-MDcrds: 2.19 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-Minimize: 1.3.8 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.16 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.23 ChimeraX-ModelPanel: 1.6.1 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0.1 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.15.4 ChimeraX-OpenFold: 1.0 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.13 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.5 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.4 ChimeraX-ProfileGrids: 1.6 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.8.2 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.3 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.2 ChimeraX-Scenes: 0.3.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.3 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.12 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.18 ChimeraX-Shape: 1.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.1 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SNFG: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.19.3 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5.3 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.4 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.50.6 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.2 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDock: 1.6.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.5 ChimeraX-Zone: 1.0.1 click: 8.3.3 colorama: 0.4.6 comm: 0.2.3 contourpy: 1.3.3 coverage: 7.13.5 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.2.4 debugpy: 1.8.20 decorator: 5.2.1 distro: 1.9.0 docutils: 0.21.2 executing: 2.2.1 filelock: 3.19.1 fonttools: 4.62.1 frozenlist: 1.8.0 funcparserlib: 2.0.0a0 glfw: 2.10.0 grako: 3.16.5 h11: 0.16.0 h5py: 3.16.0 html2text: 2025.4.15 httpcore: 1.0.9 httpx: 0.28.1 httpx-sse: 0.4.3 idna: 3.13 ihm: 2.2 imagecodecs: 2024.6.1 imagesize: 2.0.0 iniconfig: 2.3.0 ipykernel: 7.1.0 ipython: 9.9.0 ipython_pygments_lexers: 1.1.1 jedi: 0.19.2 Jinja2: 3.1.6 jsonschema: 4.26.0 jsonschema-specifications: 2025.9.1 jupyter_client: 8.8.0 jupyter_core: 5.9.1 kiwisolver: 1.5.0 line_profiler: 5.0.0 lxml: 6.0.2 lz4: 4.3.2 Markdown: 3.8.2 MarkupSafe: 3.0.3 matplotlib: 3.10.7 matplotlib-inline: 0.2.1 mcp: 1.18.0 msgpack: 1.1.1 multidict: 6.7.1 narwhals: 2.20.0 ndindex: 1.10.1 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.14.1 numpy: 1.26.4 nvidia-nvjitlink-cu12: 12.9.86 OpenMM: 8.4.0 OpenMM-CUDA-12: 8.4.0 openvr: 1.26.701 packaging: 25.0 ParmEd: 4.2.2 parso: 0.8.7 pep517: 0.13.1 pexpect: 4.9.0 pickleshare: 0.7.5 pillow: 11.3.0 pip: 25.2 pkginfo: 1.12.1.2 platformdirs: 4.9.6 plotly: 6.7.0 pluggy: 1.6.0 prompt_toolkit: 3.0.52 propcache: 0.4.1 psutil: 7.0.0 ptyprocess: 0.7.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pybind11: 3.0.1 pycollada: 0.8 pydantic: 2.13.3 pydantic-settings: 2.14.0 pydantic_core: 2.46.3 pydata-sphinx-theme: 0.17.1 pydicom: 2.4.4 Pygments: 2.18.0 pynmrstar: 3.5.1 pynrrd: 1.0.0 PyOpenGL: 3.1.10 PyOpenGL-accelerate: 3.1.10 pyopenxr: 1.1.4501 pyparsing: 3.3.2 pyproject_hooks: 1.2.0 PyQt6-commercial: 6.10.2 PyQt6-Qt6: 6.10.1 PyQt6-WebEngine-commercial: 6.10.0 PyQt6-WebEngine-Qt6: 6.10.1 PyQt6_sip: 13.10.3 pytest: 9.0.3 pytest-cov: 7.1.0 python-dateutil: 2.9.0.post0 python-dotenv: 1.2.2 python-multipart: 0.0.27 pyzmq: 27.1.0 qtconsole: 5.7.0 QtPy: 2.4.3 qtshim: 1.2.2 RandomWords: 0.4.0 referencing: 0.37.0 requests: 2.32.5 roman-numerals: 4.1.0 rpds-py: 0.30.0 scipy: 1.14.0 setuptools: 80.9.0 sfftk-rw: 0.8.1 six: 1.17.0 snowballstemmer: 3.0.1 sortedcontainers: 2.4.0 soupsieve: 2.8.3 Sphinx: 9.0.4 sphinx-autodoc-typehints: 3.6.1 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 sse-starlette: 3.4.1 stack-data: 0.6.3 starlette: 1.0.0 superqt: 0.7.6 tables: 3.10.2 tcia_utils: 3.2.1 tifffile: 2025.3.13 tinyarray: 1.2.5 tornado: 6.5.5 tqdm: 4.67.3 traitlets: 5.14.3 typing-inspection: 0.4.2 typing_extensions: 4.15.0 Unidecode: 1.4.0 urllib3: 2.6.3 uvicorn: 0.46.0 wcwidth: 0.7.0 webcolors: 24.11.1 wheel: 0.45.1 wheel-filename: 1.4.2 yarl: 1.23.0 }}} " defect closed normal Graphics nonchimerax all ChimeraX