id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 20277 ProNA3D TypeError: Logger.error() got an unexpected keyword argument 'log' goddard@… genz.luca@… "{{{ The following bug report has been submitted: Platform: macOS-26.4.1-arm64-arm-64bit ChimeraX Version: 1.13.dev202605052233 (2026-05-05 22:33:02 UTC) Description Tried ProNA3D with AlphaFold 3 model and all ProNA3D advanced settings for AlphaFold enabled and got this error. Log: UCSF ChimeraX version: 1.13.dev202605052233 (2026-05-05) © 2016-2026 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > toolshed install /Users/goddard/Downloads/ChimeraX_ProNA3D-0.1-py3-none- > any.whl Installed ChimeraX-ProNA3D (0.1) > ui tool show ProNA3D Please register the custom scheme 'prona3d' via QWebEngineUrlScheme::registerScheme() before installing the custom scheme handler. > open 9urm Summary of feedback from opening 9urm fetched from pdb --- note | Fetching compressed mmCIF 9urm from http://files.rcsb.org/download/9urm.cif 9urm title: HRV14 3C in complex with single chain antibody YDF and cloverleafRNA- conformation1 splitRNA [more info...] Chain information for 9urm #1 --- Chain | Description | UniProt A | Protease 3C | POLG_HRV14 2-181 B | YDF H chain | C | YDF L chain | R | RNA (83-MER) | > select /A:2-180 1382 atoms, 1403 bonds, 179 residues, 1 model selected ### ProNA3D Cluster Analysis Results Cluster information for 9urm [A, R] --- Cluster| Residues 1| A:82, R:49, A:80, R:71, R:72, A:84, R:50, R:48, A:81, A:83, A:85, R:47 2| A:6, R:61, A:153, R:60, A:13, R:63, A:155, A:154, A:5, R:62, A:89, A:9, A:12 Calculation of interface was successful Interface plot saved to: /Users/goddard/Desktop/interface_plot.png > log metadata #1 Metadata for 9urm #1 --- Title | HRV14 3C in complex with single chain antibody YDF and cloverleafRNA-conformation1 splitRNA Citation | Yang, B., Wang, Q., Sun, S.W., Zhang, X. (?). HRV14 3C in complex with single chain antibody YDF and cloverleafRNA-conformation1 splitRNA. To Be Published Gene sources | rhinovirus B14 Homo sapiens CryoEM Map | EMDB 64461 — open map Experimental method | Electron microscopy Resolution | 4.24Å > open 64461 fromDatabase emdb Summary of feedback from opening 64461 fetched from emdb --- notes | Fetching compressed map 64461 from https://files.wwpdb.org/pub/emdb/structures/EMD-64461/map/emd_64461.map.gz Fetching map header 64461 from https://files.wwpdb.org/pub/emdb/structures/EMD-64461/header/emd-64461.xml Opened emdb 64461 as #2, grid size 280,280,280, pixel 0.96, shown at level 0.06, step 1, values float32, fit PDB 9urm Chain1 is equal to chain2! ### ProNA3D Cluster Analysis Results Cluster information for 9urm [A, R] --- Cluster| Residues| Zone 1| A:82, R:49, A:80, R:71, R:72, A:84, R:50, R:48, A:81, A:83, A:85, R:47| Zone in Cluster Nr 1 2| A:6, R:61, A:153, R:60, A:13, R:63, A:155, A:154, A:5, R:62, A:89, A:9, A:12| Zone in Cluster Nr 2 Calculation of interface was successful > volume zone #2 nearAtoms #1/A:82 #1/R:49 #1/A:80 #1/R:71 #1/R:72 #1/A:84 > #1/R:50 #1/R:48 #1/A:81 #1/A:83 #1/A:85 #1/R:47 range 5 > volume zone #2 nearAtoms #1/A:6 #1/R:61 #1/A:153 #1/R:60 #1/A:13 #1/R:63 > #1/A:155 #1/A:154 #1/A:5 #1/R:62 #1/A:89 #1/A:9 #1/A:12 range 5 > close > open 9obd Summary of feedback from opening 9obd fetched from pdb --- notes | Fetching compressed mmCIF 9obd from http://files.rcsb.org/download/9obd.cif Fetching CCD A1CAK from https://files.wwpdb.org/pub/pdb/refdata/chem_comp/K/A1CAK/A1CAK.cif Fetching CCD A1CAL from https://files.wwpdb.org/pub/pdb/refdata/chem_comp/L/A1CAL/A1CAL.cif Fetching CCD F2T from https://files.wwpdb.org/pub/pdb/refdata/chem_comp/T/F2T/F2T.cif Fetching CCD RFJ from https://files.wwpdb.org/pub/pdb/refdata/chem_comp/J/RFJ/RFJ.cif 9obd title: Crystal structure of human Argonaute2 in complex with a fully modified siRNA with a 5'-phenylpropargyl phosphate [more info...] Chain information for 9obd #1 --- Chain | Description | UniProt A | Protein argonaute-2 | AGO2_HUMAN 1-859 B | fully modified siRNA with a 5' phenylpropargyl phosphate | Non-standard residues in 9obd #1 --- IPA — isopropyl alcohol (2-propanol) IPH — phenol MG — magnesium ion > ui tool show OpenFold > openfold predict protein /A rna /B ligandCcd MG,IPH(3),IPA(2) name 9obd Running OpenFold prediction of protein with 859 residues, nucleic acid sequence with 21 residues, 6 ligands IPA (2), IPH (3), MG on gpu Using multiple sequence alignment server https://api.colabfold.com Confidence pTM 0.93, ipTM 0.84, pLDDT 84 OpenFold prediction completed in 573 seconds (start openfold 13 sec, initialize neural net 29 sec, sequence search 109 sec, structure inference 387 sec) Please cite OpenFold-1 Democratizing Biomolecular Interaction Modeling. BioRxiv https://doi.org/10.1101/2024.11.19.624167 if you use these predictions. > open > /Users/goddard/Desktop/openfold/9obd/9obd/seed_42/9obd_seed_42_sample_1_model.cif > logInfo false Matchmaker 9obd, chain A (#1) with 9obd_seed_42_sample_1_model.cif, chain A (#2), sequence alignment score = 4383.3 RMSD between 698 pruned atom pairs is 0.780 angstroms; (across all 810 pairs: 1.574) > open /Users/goddard/ucsf/data/alphafold3/fold_9obd/fold_9obd_model_0.cif Chain information for fold_9obd_model_0.cif #3 --- Chain | Description A | . B | . Computing secondary structure > mmaker #3 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 9obd, chain A (#1) with fold_9obd_model_0.cif, chain A (#3), sequence alignment score = 4371.3 RMSD between 691 pruned atom pairs is 0.586 angstroms; (across all 810 pairs: 1.713) > ui tool show ProNA3D Please register the custom scheme 'prona3d' via QWebEngineUrlScheme::registerScheme() before installing the custom scheme handler. > hide #2 models > hide #!1 models ### ProNA3D Cluster Analysis Results Cluster information for fold_9obd_model_0.cif [A, B] --- Cluster| Residues 1| A:545, B:1, A:524, A:670, B:11, A:339, B:21, A:635, B:10, A:551, B:2, A:548, A:68, B:14, A:179, B:13, A:280, B:17, A:761, B:8, A:757, B:6, A:529, B:15, A:337, B:20, A:67, B:16, A:792, B:3, A:312, A:277, A:222, A:790, B:4, A:126, A:600, A:756, B:5, A:570, A:335, B:19, A:351, B:9, A:559, A:804, A:566, A:178, A:526, A:547, A:672, A:97, A:66, A:710, A:128, B:7, A:674, B:12, A:759, A:65, A:603, A:562, B:18, A:797, A:675, A:546, A:525, A:311, A:760, A:294, A:331, A:296, A:602, A:753, A:798, A:368, A:221, A:336, A:637, A:316, A:795, A:601, A:793, A:332, A:353, A:365, A:563, A:815, A:361, A:70, A:72, A:220, A:859, A:295, A:758, A:177, A:338, A:122, A:754, A:533, A:544, A:364, A:714, A:709, A:375, A:279, A:176, A:63, A:266, A:278, A:812, A:275, A:308, A:69, A:522, A:814, A:755, A:799, A:558, A:671, A:369, A:811, A:796, A:271, A:272 Traceback (most recent call last): File ""/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/widgets/htmlview.py"", line 316, in interceptRequest self._callback(info) File ""/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/widgets/htmlview.py"", line 93, in _intercept return interceptor(request_info, *args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/htmltool.py"", line 112, in _navigate self.session.ui.thread_safe(self.handle_scheme, url) File ""/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/gui.py"", line 543, in thread_safe func(*args, **kw) File ""/Users/goddard/Library/Application Support/ChimeraX/1.13/lib/python/site-packages/chimerax/ProNA3D/tool.py"", line 474, in handle_scheme self.session.logger.error('Mean pLDDT calculation requires ""AlphaFold Prediction"" to be selected as Input Type.', log=True) TypeError: Logger.error() got an unexpected keyword argument 'log' TypeError: Logger.error() got an unexpected keyword argument 'log' File ""/Users/goddard/Library/Application Support/ChimeraX/1.13/lib/python/site-packages/chimerax/ProNA3D/tool.py"", line 474, in handle_scheme self.session.logger.error('Mean pLDDT calculation requires ""AlphaFold Prediction"" to be selected as Input Type.', log=True) See log for complete Python traceback. Failed to send bug report. Bug report server www.rbvi.ucsf.edu is unavailable OpenGL version: 4.1 Metal - 90.5 OpenGL renderer: Apple M2 Ultra OpenGL vendor: Apple Python: 3.11.9 Locale: en_US.UTF-8 Qt version: PyQt6 6.10.2, Qt 6.10.0 Qt runtime version: 6.10.1 Qt platform: cocoa Hardware: Hardware Overview: Model Name: Mac Studio Model Identifier: Mac14,14 Model Number: Z1800003VLL/A Chip: Apple M2 Ultra Total Number of Cores: 24 (16 Performance and 8 Efficiency) Memory: 64 GB System Firmware Version: 18000.101.7 OS Loader Version: 18000.101.7 Software: System Software Overview: System Version: macOS 26.4.1 (25E253) Kernel Version: Darwin 25.4.0 Time since boot: 9 days, 48 minutes Graphics/Displays: Apple M2 Ultra: Chipset Model: Apple M2 Ultra Type: GPU Bus: Built-In Total Number of Cores: 60 Vendor: Apple (0x106b) Metal Support: Metal 4 Displays: PHL 278B1: Resolution: 3840 x 2160 (2160p/4K UHD 1 - Ultra High Definition) UI Looks like: 1920 x 1080 @ 60.00Hz Main Display: Yes Mirror: Off Online: Yes Rotation: Supported Installed Packages: accessible-pygments: 0.0.5 aiohappyeyeballs: 2.6.1 aiohttp: 3.13.1 aiosignal: 1.4.0 alabaster: 1.0.0 annotated-types: 0.7.0 anyio: 4.13.0 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 3.0.1 attrs: 26.1.0 babel: 2.18.0 beautifulsoup4: 4.13.5 blockdiag: 3.0.0 blosc2: 4.1.2 bs4: 0.0.2 build: 1.3.0 certifi: 2025.8.3 cftime: 1.6.5 charset-normalizer: 3.4.7 ChimeraX-AddCharge: 1.5.20 ChimeraX-AddH: 2.2.8 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.6.2 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 3.2 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Animations: 1.0 ChimeraX-Aniso: 1.3.2 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.67.1 ChimeraX-AtomicLibrary: 14.4 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.3 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-Boltz: 1.1 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.2 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.6.0 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4.1 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.5 ChimeraX-ChemGroup: 2.0.2 ChimeraX-Clashes: 2.4 ChimeraX-Cluster: 1.0 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.8 ChimeraX-CommandLine: 1.3.1 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.13.dev202605052233 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.5 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.4 ChimeraX-Dicom: 1.2.7 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.2.1 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5.3 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.4 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.8.2 ChimeraX-Label: 1.5 ChimeraX-LightingGUI: 1.0 ChimeraX-ListInfo: 1.3.1 ChimeraX-Log: 1.2.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.3 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchAlign: 1.1 ChimeraX-MatchMaker: 2.4 ChimeraX-MCopy: 1.0 ChimeraX-MCPServer: 0.2.0 ChimeraX-MDcrds: 2.19 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-Minimize: 1.3.8 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.16 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.23 ChimeraX-ModelPanel: 1.6.1 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0.1 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.15.4 ChimeraX-OpenFold: 1.0 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.13 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.5 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.4 ChimeraX-ProfileGrids: 1.6 ChimeraX-ProNA3D: 0.1 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.8.2 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.3 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.2 ChimeraX-Scenes: 0.3.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.3 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.12 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.18 ChimeraX-Shape: 1.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.1 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SNFG: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.19.3 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5.3 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.4 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.50.6 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.2 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDock: 1.6.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.5 ChimeraX-Zone: 1.0.1 click: 8.3.3 colorama: 0.4.6 comm: 0.2.3 contourpy: 1.3.3 coverage: 7.13.5 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.2.4 debugpy: 1.8.20 decorator: 5.2.1 docutils: 0.21.2 executing: 2.2.1 filelock: 3.19.1 fonttools: 4.62.1 frozenlist: 1.8.0 funcparserlib: 2.0.0a0 glfw: 2.10.0 grako: 3.16.5 h11: 0.16.0 h5py: 3.16.0 html2text: 2025.4.15 httpcore: 1.0.9 httpx: 0.28.1 httpx-sse: 0.4.3 idna: 3.13 ihm: 2.2 imagecodecs: 2024.6.1 imagesize: 2.0.0 iniconfig: 2.3.0 ipykernel: 7.1.0 ipython: 9.9.0 ipython_pygments_lexers: 1.1.1 jedi: 0.19.2 Jinja2: 3.1.6 jsonschema: 4.26.0 jsonschema-specifications: 2025.9.1 jupyter_client: 8.8.0 jupyter_core: 5.9.1 kiwisolver: 1.5.0 line_profiler: 5.0.0 lxml: 6.0.2 lz4: 4.3.2 Markdown: 3.8.2 MarkupSafe: 3.0.3 matplotlib: 3.10.7 matplotlib-inline: 0.2.1 mcp: 1.18.0 msgpack: 1.1.1 multidict: 6.7.1 narwhals: 2.20.0 ndindex: 1.10.1 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.14.1 numpy: 1.26.4 OpenMM: 8.4.0 openvr: 1.26.701 packaging: 25.0 ParmEd: 4.2.2 parso: 0.8.7 pep517: 0.13.1 pexpect: 4.9.0 pickleshare: 0.7.5 pillow: 11.3.0 pip: 25.2 pkginfo: 1.12.1.2 platformdirs: 4.9.6 plotly: 6.7.0 pluggy: 1.6.0 prompt_toolkit: 3.0.52 propcache: 0.4.1 psutil: 7.0.0 ptyprocess: 0.7.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pybind11: 3.0.1 pycollada: 0.8 pydantic: 2.13.3 pydantic-settings: 2.14.0 pydantic_core: 2.46.3 pydata-sphinx-theme: 0.17.1 pydicom: 2.4.4 Pygments: 2.18.0 pynmrstar: 3.5.1 pynrrd: 1.0.0 PyOpenGL: 3.1.10 PyOpenGL-accelerate: 3.1.10 pyopenxr: 1.1.4501 pyparsing: 3.3.2 pyproject_hooks: 1.2.0 PyQt6: 6.10.2 PyQt6-Qt6: 6.10.1 PyQt6-WebEngine: 6.10.0 PyQt6-WebEngine-Qt6: 6.10.1 PyQt6_sip: 13.10.3 pytest: 9.0.3 pytest-cov: 7.1.0 python-dateutil: 2.9.0.post0 python-dotenv: 1.2.2 python-multipart: 0.0.27 pyzmq: 27.1.0 qtconsole: 5.7.0 QtPy: 2.4.3 qtshim: 1.2.2 RandomWords: 0.4.0 referencing: 0.37.0 requests: 2.32.5 roman-numerals: 4.1.0 rpds-py: 0.30.0 scipy: 1.14.0 setuptools: 80.9.0 sfftk-rw: 0.8.1 six: 1.17.0 snowballstemmer: 3.0.1 sortedcontainers: 2.4.0 soupsieve: 2.8.3 Sphinx: 9.0.4 sphinx-autodoc-typehints: 3.6.1 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 sse-starlette: 3.4.1 stack-data: 0.6.3 starlette: 1.0.0 superqt: 0.7.6 tables: 3.10.2 tcia_utils: 3.2.1 tifffile: 2025.3.13 tinyarray: 1.2.5 tornado: 6.5.5 tqdm: 4.67.3 traitlets: 5.14.3 typing-inspection: 0.4.2 typing_extensions: 4.15.0 Unidecode: 1.4.0 urllib3: 2.6.3 uvicorn: 0.46.0 wcwidth: 0.7.0 webcolors: 24.11.1 wheel: 0.45.1 wheel-filename: 1.4.2 yarl: 1.23.0 File attachment: fold_9obd.zip }}} [attachment:""fold_9obd.zip""] " defect assigned normal Third Party all ChimeraX