id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 20278 Crash in QDockWidget::event() in Qt 6.9.2 chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-15.0-x86_64-i386-64bit ChimeraX Version: 1.11.1 (2026-01-23 05:51:34 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Segmentation fault Thread 0x000070002781e000 (most recent call first): File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 579 in _handle_results File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 982 in run File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1045 in _bootstrap_inner File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1002 in _bootstrap Thread 0x000070002681b000 (most recent call first): File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 531 in _handle_tasks File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 982 in run File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1045 in _bootstrap_inner File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1002 in _bootstrap Thread 0x0000700025818000 (most recent call first): File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/selectors.py"", line 415 in select File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/connection.py"", line 948 in wait File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 502 in _wait_for_updates File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 522 in _handle_workers File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 982 in run File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1045 in _bootstrap_inner File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1002 in _bootstrap Thread 0x0000700024815000 (most recent call first): File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 982 in run File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1045 in _bootstrap_inner File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1002 in _bootstrap Thread 0x0000700023812000 (most recent call first): File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 982 in run File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1045 in _bootstrap_inner File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1002 in _bootstrap Thread 0x000070002280f000 (most recent call first): File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 982 in run File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1045 in _bootstrap_inner File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1002 in _bootstrap Thread 0x000070002180c000 (most recent call first): File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 982 in run File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1045 in _bootstrap_inner File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1002 in _bootstrap Thread 0x0000700020809000 (most recent call first): File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 982 in run File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1045 in _bootstrap_inner File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1002 in _bootstrap Thread 0x000070001f806000 (most recent call first): File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 982 in run File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1045 in _bootstrap_inner File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1002 in _bootstrap Thread 0x000070001e803000 (most recent call first): File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 982 in run File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1045 in _bootstrap_inner File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1002 in _bootstrap Thread 0x000070001d800000 (most recent call first): File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 982 in run File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1045 in _bootstrap_inner File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1002 in _bootstrap Thread 0x000070001c7fd000 (most recent call first): File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 982 in run File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1045 in _bootstrap_inner File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1002 in _bootstrap Thread 0x000070001b7fa000 (most recent call first): File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 982 in run File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1045 in _bootstrap_inner File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1002 in _bootstrap Thread 0x000070001a7f7000 (most recent call first): File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 982 in run File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1045 in _bootstrap_inner File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1002 in _bootstrap Thread 0x00007000197f4000 (most recent call first): File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 982 in run File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1045 in _bootstrap_inner File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1002 in _bootstrap Current thread 0x00007ff85aa52680 (most recent call first): File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py"", line 414 in event_loop File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1064 in init File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1229 in File """", line 88 in _run_code File """", line 198 in _run_module_as_main Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, psutil._psutil_osx, psutil._psutil_posix, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, PIL._imaging, chimerax.pdb_lib._load_libs, chimerax.map._map, chimerax.surface._surface, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, chimerax.pdb._pdbio, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, PIL._imagingmath (total: 48) {""app_name"":""ChimeraX"",""timestamp"":""2026-05-06 17:06:27.00 -0400"",""app_version"":""1.11.1"",""slice_uuid"":""5cbc32a0-c22e-3696-af85-4071e4699df0"",""build_version"":""1.11.1.0"",""platform"":1,""bundleID"":""edu.ucsf.cgl.ChimeraX"",""share_with_app_devs"":1,""is_first_party"":0,""bug_type"":""309"",""os_version"":""macOS 15.0 (24A335)"",""roots_installed"":0,""name"":""ChimeraX"",""incident_id"":""EE61AE45-B8E9-40A4-B847-532E0332FCD7""} { ""uptime"" : 510000, ""procRole"" : ""Foreground"", ""version"" : 2, ""userID"" : 501, ""deployVersion"" : 210, ""modelCode"" : ""iMac20,1"", ""coalitionID"" : 28158, ""osVersion"" : { ""train"" : ""macOS 15.0"", ""build"" : ""24A335"", ""releaseType"" : ""User"" }, ""captureTime"" : ""2026-05-06 17:06:23.6931 -0400"", ""codeSigningMonitor"" : 0, ""incident"" : ""EE61AE45-B8E9-40A4-B847-532E0332FCD7"", ""pid"" : 46400, ""cpuType"" : ""X86-64"", ""roots_installed"" : 0, ""bug_type"" : ""309"", ""procLaunch"" : ""2026-05-04 15:15:45.5887 -0400"", ""procStartAbsTime"" : 338655643194828, ""procExitAbsTime"" : 518087454037856, ""procName"" : ""ChimeraX"", ""procPath"" : ""\/Applications\/ChimeraX-1.11.1.app\/Contents\/MacOS\/ChimeraX"", ""bundleInfo"" : {""CFBundleShortVersionString"":""1.11.1"",""CFBundleVersion"":""1.11.1.0"",""CFBundleIdentifier"":""edu.ucsf.cgl.ChimeraX""}, ""storeInfo"" : {""deviceIdentifierForVendor"":""8A6AA598-6AAA-5F3D-859B-9DD4909E9083"",""thirdParty"":true}, ""parentProc"" : ""launchd"", ""parentPid"" : 1, ""coalitionName"" : ""edu.ucsf.cgl.ChimeraX"", ""crashReporterKey"" : ""B6C49923-DB55-FA95-3A93-BDC7AF179334"", ""codeSigningID"" : ""edu.ucsf.cgl.ChimeraX"", ""codeSigningTeamID"" : ""LWV8X224YF"", ""codeSigningFlags"" : 570491649, ""codeSigningValidationCategory"" : 6, ""codeSigningTrustLevel"" : 4294967295, ""bootSessionUUID"" : ""449E809F-BB49-4876-A6A4-06B37DA50B83"", ""bridgeVersion"" : {""build"":""22P353"",""train"":""9.0""}, ""sip"" : ""enabled"", ""vmRegionInfo"" : ""0x8 is not in any region. Bytes before following region: 4382351352 REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL UNUSED SPACE AT START ---> __TEXT 105356000-105358000 [ 8K] r-x\/r-x SM=COW \/Applications\/ChimeraX-1.11.1.app\/Contents\/MacOS\/ChimeraX"", ""exception"" : {""codes"":""0x0000000000000001, 0x0000000000000008"",""rawCodes"":[1,8],""type"":""EXC_BAD_ACCESS"",""signal"":""SIGSEGV"",""subtype"":""KERN_INVALID_ADDRESS at 0x0000000000000008""}, ""termination"" : {""flags"":0,""code"":11,""namespace"":""SIGNAL"",""indicator"":""Segmentation fault: 11"",""byProc"":""ChimeraX"",""byPid"":46400}, ""ktriageinfo"" : ""VM - (arg = 0x3) mach_vm_allocate_kernel failed within call to vm_map_enter VM - (arg = 0x3) mach_vm_allocate_kernel failed within call to vm_map_enter VM - (arg = 0x3) mach_vm_allocate_kernel failed within call to vm_map_enter VM - (arg = 0x3) mach_vm_allocate_kernel failed within call to vm_map_enter VM - (arg = 0x3) mach_vm_allocate_kernel failed within call to vm_map_enter "", ""vmregioninfo"" : ""0x8 is not in any region. 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""QWaitCondition::wait(QMutex*, QDeadlineTimer)"" ,""symbolLocation"":84,""imageIndex"":45}, {""imageOffset"":2419147,""imageIndex"":45}, {""imageOffset"":2384111,""imageIndex"":45}, {""imageOffset"":25171,""symbol"": ""_pthread_start"" ,""symbolLocation"":99,""imageIndex"":129}, {""imageOffset"":7151,""symbol"": ""thread_start"" ,""symbolLocation"":15,""imageIndex"":129}]},{""id"":4837598,""frames"":[ {""imageOffset"":7116,""symbol"": ""start_wqthread"" ,""symbolLocation"":0,""imageIndex"":129}], 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All rights reserved. How to cite UCSF ChimeraX > open ""/Users/michael/Documents/Protein Structures PDB/9GJT NiV L Apo.pdb"" > ""/Users/michael/Documents/Protein Structures PDB/9GJU NiV L RNA Bound.pdb"" 9GJT NiV L Apo.pdb title: Structure of nipah virus RNA polymerase complex - apo state [more info...] Chain information for 9GJT NiV L Apo.pdb #1 --- Chain | Description | UniProt A | RNA-directed RNA polymerase L | L_NIPAV 2-2244 B C D E | protein P | PHOSP_NIPAV 1-709 Non-standard residues in 9GJT NiV L Apo.pdb #1 --- ZN — zinc ion 9GJU NiV L RNA Bound.pdb title: Structure of replicating nipah virus RNA polymerase complex - RNA- bound state [more info...] Chain information for 9GJU NiV L RNA Bound.pdb #2 --- Chain | Description | UniProt A | RNA-directed RNA polymerase L | L_NIPAV 2-2244 B C D E | protein P | PHOSP_NIPAV 1-709 F | RNA (5'-R(P*ap*CP*CP*ap*ap*ap*CP*ap*A)-3') | G | RNA (5'-R(P*CP*CP*CP*up*up*GP*up*up*up*GP*GP*U)-3') | Non-standard residues in 9GJU NiV L RNA Bound.pdb #2 --- GNP — phosphoaminophosphonic acid-guanylate ester MG — magnesium ion ZN — zinc ion > ui mousemode right select Drag select of 29843 atoms, 37 pseudobonds, 249 bonds Drag select of 34952 atoms, 40 pseudobonds, 249 bonds > style sel stick Changed 34952 atom styles > show sel cartoons > hide sel atoms > show sel atoms > select clear > select #2/A:2167 12 atoms, 12 bonds, 1 residue, 1 model selected Drag select of 11592 atoms, 2374 residues, 24 pseudobonds, 9773 bonds > hide sel atoms Drag select of 2392 atoms, 659 residues, 2002 bonds, 1 pseudobonds > hide sel atoms Drag select of 1624 atoms, 474 residues, 1361 bonds, 1 pseudobonds Drag select of 1193 atoms, 427 residues, 3 pseudobonds, 1014 bonds > hide sel atoms Drag select of 882 atoms, 349 residues, 737 bonds > ui mousemode right translate > ui mousemode right select > hide sel atoms Drag select of 674 atoms, 1315 residues, 12 pseudobonds, 542 bonds > hide sel atoms Drag select of 289 atoms, 80 residues, 249 bonds Drag select of 968 atoms, 419 residues, 4 pseudobonds, 830 bonds > hide sel atoms Drag select of 337 atoms, 159 residues, 286 bonds, 1 pseudobonds > hide sel atoms Drag select of 621 atoms, 580 residues, 524 bonds Drag select of 481 atoms, 512 residues, 405 bonds Drag select of 349 atoms, 420 residues, 300 bonds > hide sel atoms Drag select of 10 residues, 3 atoms Drag select of 444 atoms, 441 residues, 365 bonds, 1 pseudobonds > hide sel atoms > select #2/G:9 23 atoms, 25 bonds, 1 residue, 1 model selected > show sel atoms > select #2/G:10 20 atoms, 21 bonds, 1 residue, 1 model selected > show sel atoms Drag select of 14 residues, 8 bonds, 8 atoms > hide #!2 models Drag select of 544 atoms, 1707 residues, 8 pseudobonds, 445 bonds > hide sel atoms > select clear > show #!2 models > hide #!1 models > ui mousemode right translate > show #!1 models > ui mousemode right select > ui tool show ""Show Sequence Viewer"" > sequence chain #1/A #2/A Alignment identifier is 1 > sequence chain #1/B #1/C #1/D #1/E #2/B #2/C #2/D #2/E Alignment identifier is 2 > sequence chain #2/F Alignment identifier is 2/F > sequence chain #2/G Alignment identifier is 2/G > select clear > select #1/B-E #2/B-E 8209 atoms, 8327 bonds, 4 pseudobonds, 1028 residues, 4 models selected Protein P [ID: 2] region 8 chains [1-709] RMSD: 6.897 > hide sel atoms > color (#!1-2 & sel) gray > color (#!1-2 & sel) light gray > color (#!1-2 & sel) dim gray > color (#!1-2 & sel) light gray > select clear > select #1/A:5-934 #2/A:6-934 13156 atoms, 13446 bonds, 3 pseudobonds, 1620 residues, 4 models selected RNA-directed RNA Polymerase L [ID: 1] region 2 chains [1-936] RMSD: 7.443 > select clear > select #1/A:5-983 #2/A:6-983 13906 atoms, 14202 bonds, 3 pseudobonds, 1718 residues, 4 models selected RNA-directed RNA Polymerase L [ID: 1] region 2 chains [1-985] RMSD: 7.371 > color (#!1-2 & sel) cornflower blue > select #1/A:984 #2/A:984 16 atoms, 14 bonds, 2 residues, 2 models selected > select #1/A:984-1451 #2/A:984-1452 6505 atoms, 6628 bonds, 7 pseudobonds, 814 residues, 4 models selected RNA-directed RNA Polymerase L [ID: 1] region 2 chains [986-1454] RMSD: 8.314 > color (#!1-2 & sel) forest green > color (#!1-2 & sel) lime > color (#!1-2 & sel) forest green > select #2/A:1453 8 atoms, 7 bonds, 1 residue, 1 model selected > select #2/A:1453-1463 91 atoms, 94 bonds, 11 residues, 1 model selected > color sel gray > select clear > select #2/A:1477-1743 2198 atoms, 2249 bonds, 267 residues, 1 model selected > color sel yellow > select clear > select #2/A:1769-2098 2468 atoms, 2518 bonds, 2 pseudobonds, 312 residues, 2 models selected > color (#!2 & sel) orange > select #2/A:2099-2100 16 atoms, 16 bonds, 2 residues, 1 model selected > select #2/A:2099-2244 1097 atoms, 1113 bonds, 1 pseudobond, 131 residues, 2 models selected > color (#!2 & sel) red > select clear > select #2/A:2098 4 atoms, 3 bonds, 1 residue, 1 model selected > select #2/A:2097 8 atoms, 7 bonds, 1 residue, 1 model selected Drag select of 18 residues > select #2/A:2098 4 atoms, 3 bonds, 1 residue, 1 model selected > color sel red > select #2/A:2097 8 atoms, 7 bonds, 1 residue, 1 model selected > color sel red > select clear > hide #!2 models > save ""/Users/michael/Documents/Protein Structures PDB/[Name].pdb"" > save ""/Users/michael/Documents/Protein Structures PDB/[Name] with colored > domains.pdb"" > save ""/Users/michael/Documents/Protein Structures PDB/[NAME].pdb"" > show #!2 models Drag select of 126 residues, 1 pseudobonds > select clear > ui mousemode right translate > hide #!2 models > hide #!1 models > open ""/Users/michael/Desktop/MOE Files/88309 and 88310 Docking/88309 25poses > MeV L Apo 909_942_1106_1110.pdb"" ""/Users/michael/Desktop/MOE Files/88309 and > 88310 Docking/88310 25poses MeV L Apo 909_942_1106_1110.pdb"" Summary of feedback from opening /Users/michael/Desktop/MOE Files/88309 and 88310 Docking/88309 25poses MeV L Apo 909_942_1106_1110.pdb --- warnings | Ignored bad PDB record found on line 130 HELIX 1 1 THR A 22 TYR A 31 1 Generated by MOE 10 Ignored bad PDB record found on line 131 HELIX 2 2 THR A 44 ASN A 55 1 Generated by MOE 12 Ignored bad PDB record found on line 132 HELIX 3 3 GLN A 60 LEU A 76 1 Generated by MOE 17 Ignored bad PDB record found on line 133 HELIX 4 4 ASN A 91 LEU A 94 1 Generated by MOE 4 Ignored bad PDB record found on line 134 HELIX 5 5 ARG A 104 ARG A 134 1 Generated by MOE 31 96 messages similar to the above omitted Summary of feedback from opening /Users/michael/Desktop/MOE Files/88309 and 88310 Docking/88310 25poses MeV L Apo 909_942_1106_1110.pdb --- warnings | Ignored bad PDB record found on line 130 HELIX 1 1 THR A 22 TYR A 31 1 Generated by MOE 10 Ignored bad PDB record found on line 131 HELIX 2 2 THR A 44 ASN A 55 1 Generated by MOE 12 Ignored bad PDB record found on line 132 HELIX 3 3 GLN A 60 LEU A 76 1 Generated by MOE 17 Ignored bad PDB record found on line 133 HELIX 4 4 ASN A 91 LEU A 94 1 Generated by MOE 4 Ignored bad PDB record found on line 134 HELIX 5 5 ARG A 104 ARG A 134 1 Generated by MOE 31 96 messages similar to the above omitted Chain information for 88309 25poses MeV L Apo 909_942_1106_1110.pdb #3 --- Chain | Description A | No description available B | No description available C | No description available D | No description available E | No description available Chain information for 88310 25poses MeV L Apo 909_942_1106_1110.pdb #4 --- Chain | Description A | No description available B | No description available C | No description available D | No description available E | No description available > style #!3-4 stick Changed 52946 atom styles > show #!3-4 cartoons Computing secondary structure > hide #!3-4 atoms > show #!3-4 atoms > ui tool show ""Show Sequence Viewer"" > sequence chain #3/A #4/A Alignment identifier is 3 > sequence chain #3/B #4/B Alignment identifier is 4 > sequence chain #3/C #4/C Alignment identifier is 5 > sequence chain #3/D #4/D Alignment identifier is 6 > sequence chain #3/E #4/E Alignment identifier is 7 > select #3/B:325-326 #4/B:325-326 76 atoms, 76 bonds, 4 residues, 2 models selected > select #3/B #4/B 2394 atoms, 2402 bonds, 2 pseudobonds, 148 residues, 4 models selected 4 [ID: 4] region 2 chains [1-74] RMSD: 0.000 > select clear > select #3/C:429-507 #4/C:429-507 2610 atoms, 2624 bonds, 158 residues, 2 models selected 5 [ID: 5] region 2 chains [1-132] RMSD: 0.000 > hide sel atoms > select #3/E:324 #4/E:324 48 atoms, 46 bonds, 2 residues, 2 models selected > select #3/E #4/E 2358 atoms, 2370 bonds, 148 residues, 2 models selected 7 [ID: 7] region 2 chains [1-74] RMSD: 0.000 > hide sel atoms > select #3/B:325-326 #4/B:325-326 76 atoms, 76 bonds, 4 residues, 2 models selected > select #3/B #4/B 2394 atoms, 2402 bonds, 2 pseudobonds, 148 residues, 4 models selected 4 [ID: 4] region 2 chains [1-74] RMSD: 0.000 > hide sel atoms > select #3/D:324-325 #4/D:324-325 86 atoms, 84 bonds, 4 residues, 2 models selected > select #3/D #4/D 1850 atoms, 1854 bonds, 114 residues, 2 models selected 6 [ID: 6] region 2 chains [1-57] RMSD: 0.000 > hide sel atoms > select clear > select #3/C:429-507 #4/C:429-507 2610 atoms, 2624 bonds, 158 residues, 2 models selected 5 [ID: 5] region 2 chains [1-132] RMSD: 0.000 > select #3/C:507 #4/C:507 46 atoms, 44 bonds, 2 residues, 2 models selected > select #3/C:507 #4/C:507 46 atoms, 44 bonds, 2 residues, 2 models selected 5 [ID: 5] region 2 chains [132] RMSD: 0.000 > select #3/C:455-507 #4/C:455-507 1770 atoms, 1776 bonds, 106 residues, 2 models selected > select #3/C:455-507 #4/C:455-507 1770 atoms, 1776 bonds, 106 residues, 2 models selected 5 [ID: 5] region 2 chains [80-132] RMSD: 0.000 > select #3/C:507 #4/C:507 46 atoms, 44 bonds, 2 residues, 2 models selected > select #3/C:507 #4/C:507 46 atoms, 44 bonds, 2 residues, 2 models selected 5 [ID: 5] region 2 chains [132] RMSD: 0.000 > select #3/A:7 #4/A:7 32 atoms, 30 bonds, 2 residues, 2 models selected > select #3/A #4/A 40348 atoms, 40796 bonds, 12 pseudobonds, 2506 residues, 4 models selected 3 [ID: 3] region 2 chains [1-1253] RMSD: 0.000 > hide sel atoms > select clear > select #3/C:429-507 #4/C:429-507 2610 atoms, 2624 bonds, 158 residues, 2 models selected 5 [ID: 5] region 2 chains [1-132] RMSD: 0.000 > hide sel atoms > ui mousemode right select > select #3/C:357 14 atoms, 13 bonds, 1 residue, 1 model selected Drag select of 1196 atoms, 1238 residues, 1100 bonds > hide sel atoms > select clear > ui mousemode right translate > open ""/Users/michael/Desktop/MOE Files/88309 and 88310 Docking/88309 25poses > pose 1 MeV L Apo 909_942_1106_1110.pdb"" ""/Users/michael/Desktop/MOE > Files/88309 and 88310 Docking/88309 25poses pose 5 MeV L Apo > 909_942_1106_1110.pdb"" ""/Users/michael/Desktop/MOE Files/88309 and 88310 > Docking/88309 25poses pose 10 MeV L Apo 909_942_1106_1110.pdb"" > ""/Users/michael/Desktop/MOE Files/88309 and 88310 Docking/88309 25poses pose > 15 MeV L Apo 909_942_1106_1110.pdb"" ""/Users/michael/Desktop/MOE Files/88309 > and 88310 Docking/88309 25poses pose 20 MeV L Apo 909_942_1106_1110.pdb"" > ""/Users/michael/Desktop/MOE Files/88309 and 88310 Docking/88309 25poses pose > 25 MeV L Apo 909_942_1106_1110.pdb"" ""/Users/michael/Desktop/MOE Files/88309 > and 88310 Docking/88310 25poses pose 1 MeV L Apo 909_942_1106_1110.pdb"" > ""/Users/michael/Desktop/MOE Files/88309 and 88310 Docking/88310 25poses pose > 5 MeV L Apo 909_942_1106_1110.pdb"" ""/Users/michael/Desktop/MOE Files/88309 > and 88310 Docking/88310 25poses pose 10 MeV L Apo 909_942_1106_1110.pdb"" > ""/Users/michael/Desktop/MOE Files/88309 and 88310 Docking/88310 25poses pose > 15 MeV L Apo 909_942_1106_1110.pdb"" ""/Users/michael/Desktop/MOE Files/88309 > and 88310 Docking/88310 25poses pose 20 MeV L Apo 909_942_1106_1110.pdb"" > ""/Users/michael/Desktop/MOE Files/88309 and 88310 Docking/88310 25poses pose > 25 MeV L Apo 909_942_1106_1110.pdb"" Summary of feedback from opening /Users/michael/Desktop/MOE Files/88309 and 88310 Docking/88309 25poses pose 1 MeV L Apo 909_942_1106_1110.pdb --- warnings | Ignored bad PDB record found on line 130 HELIX 1 1 THR A 22 TYR A 31 1 Generated by MOE 10 Ignored bad PDB record found on line 131 HELIX 2 2 THR A 44 ASN A 55 1 Generated by MOE 12 Ignored bad PDB record found on line 132 HELIX 3 3 GLN A 60 LEU A 76 1 Generated by MOE 17 Ignored bad PDB record found on line 133 HELIX 4 4 ASN A 91 LEU A 94 1 Generated by MOE 4 Ignored bad PDB record found on line 134 HELIX 5 5 ARG A 104 ARG A 134 1 Generated by MOE 31 96 messages similar to the above omitted Summary of feedback from opening /Users/michael/Desktop/MOE Files/88309 and 88310 Docking/88309 25poses pose 5 MeV L Apo 909_942_1106_1110.pdb --- warnings | Ignored bad PDB record found on line 130 HELIX 1 1 THR A 22 TYR A 31 1 Generated by MOE 10 Ignored bad PDB record found on line 131 HELIX 2 2 THR A 44 ASN A 55 1 Generated by MOE 12 Ignored bad PDB record found on line 132 HELIX 3 3 GLN A 60 LEU A 76 1 Generated by MOE 17 Ignored bad PDB record found on line 133 HELIX 4 4 ASN A 91 LEU A 94 1 Generated by MOE 4 Ignored bad PDB record found on line 134 HELIX 5 5 ARG A 104 ARG A 134 1 Generated by MOE 31 96 messages similar to the above omitted Summary of feedback from opening /Users/michael/Desktop/MOE Files/88309 and 88310 Docking/88309 25poses pose 10 MeV L Apo 909_942_1106_1110.pdb --- warnings | Ignored bad PDB record found on line 130 HELIX 1 1 THR A 22 TYR A 31 1 Generated by MOE 10 Ignored bad PDB record found on line 131 HELIX 2 2 THR A 44 ASN A 55 1 Generated by MOE 12 Ignored bad PDB record found on line 132 HELIX 3 3 GLN A 60 LEU A 76 1 Generated by MOE 17 Ignored bad PDB record found on line 133 HELIX 4 4 ASN A 91 LEU A 94 1 Generated by MOE 4 Ignored bad PDB record found on line 134 HELIX 5 5 ARG A 104 ARG A 134 1 Generated by MOE 31 96 messages similar to the above omitted Summary of feedback from opening /Users/michael/Desktop/MOE Files/88309 and 88310 Docking/88309 25poses pose 15 MeV L Apo 909_942_1106_1110.pdb --- warnings | Ignored bad PDB record found on line 130 HELIX 1 1 THR A 22 TYR A 31 1 Generated by MOE 10 Ignored bad PDB record found on line 131 HELIX 2 2 THR A 44 ASN A 55 1 Generated by MOE 12 Ignored bad PDB record found on line 132 HELIX 3 3 GLN A 60 LEU A 76 1 Generated by MOE 17 Ignored bad PDB record found on line 133 HELIX 4 4 ASN A 91 LEU A 94 1 Generated by MOE 4 Ignored bad PDB record found on line 134 HELIX 5 5 ARG A 104 ARG A 134 1 Generated by MOE 31 96 messages similar to the above omitted Summary of feedback from opening /Users/michael/Desktop/MOE Files/88309 and 88310 Docking/88309 25poses pose 20 MeV L Apo 909_942_1106_1110.pdb --- warnings | Ignored bad PDB record found on line 130 HELIX 1 1 THR A 22 TYR A 31 1 Generated by MOE 10 Ignored bad PDB record found on line 131 HELIX 2 2 THR A 44 ASN A 55 1 Generated by MOE 12 Ignored bad PDB record found on line 132 HELIX 3 3 GLN A 60 LEU A 76 1 Generated by MOE 17 Ignored bad PDB record found on line 133 HELIX 4 4 ASN A 91 LEU A 94 1 Generated by MOE 4 Ignored bad PDB record found on line 134 HELIX 5 5 ARG A 104 ARG A 134 1 Generated by MOE 31 96 messages similar to the above omitted Summary of feedback from opening /Users/michael/Desktop/MOE Files/88309 and 88310 Docking/88309 25poses pose 25 MeV L Apo 909_942_1106_1110.pdb --- warnings | Ignored bad PDB record found on line 130 HELIX 1 1 THR A 22 TYR A 31 1 Generated by MOE 10 Ignored bad PDB record found on line 131 HELIX 2 2 THR A 44 ASN A 55 1 Generated by MOE 12 Ignored bad PDB record found on line 132 HELIX 3 3 GLN A 60 LEU A 76 1 Generated by MOE 17 Ignored bad PDB record found on line 133 HELIX 4 4 ASN A 91 LEU A 94 1 Generated by MOE 4 Ignored bad PDB record found on line 134 HELIX 5 5 ARG A 104 ARG A 134 1 Generated by MOE 31 96 messages similar to the above omitted Summary of feedback from opening /Users/michael/Desktop/MOE Files/88309 and 88310 Docking/88310 25poses pose 1 MeV L Apo 909_942_1106_1110.pdb --- warnings | Ignored bad PDB record found on line 130 HELIX 1 1 THR A 22 TYR A 31 1 Generated by MOE 10 Ignored bad PDB record found on line 131 HELIX 2 2 THR A 44 ASN A 55 1 Generated by MOE 12 Ignored bad PDB record found on line 132 HELIX 3 3 GLN A 60 LEU A 76 1 Generated by MOE 17 Ignored bad PDB record found on line 133 HELIX 4 4 ASN A 91 LEU A 94 1 Generated by MOE 4 Ignored bad PDB record found on line 134 HELIX 5 5 ARG A 104 ARG A 134 1 Generated by MOE 31 96 messages similar to the above omitted Summary of feedback from opening /Users/michael/Desktop/MOE Files/88309 and 88310 Docking/88310 25poses pose 5 MeV L Apo 909_942_1106_1110.pdb --- warnings | Ignored bad PDB record found on line 130 HELIX 1 1 THR A 22 TYR A 31 1 Generated by MOE 10 Ignored bad PDB record found on line 131 HELIX 2 2 THR A 44 ASN A 55 1 Generated by MOE 12 Ignored bad PDB record found on line 132 HELIX 3 3 GLN A 60 LEU A 76 1 Generated by MOE 17 Ignored bad PDB record found on line 133 HELIX 4 4 ASN A 91 LEU A 94 1 Generated by MOE 4 Ignored bad PDB record found on line 134 HELIX 5 5 ARG A 104 ARG A 134 1 Generated by MOE 31 96 messages similar to the above omitted Summary of feedback from opening /Users/michael/Desktop/MOE Files/88309 and 88310 Docking/88310 25poses pose 10 MeV L Apo 909_942_1106_1110.pdb --- warnings | Ignored bad PDB record found on line 130 HELIX 1 1 THR A 22 TYR A 31 1 Generated by MOE 10 Ignored bad PDB record found on line 131 HELIX 2 2 THR A 44 ASN A 55 1 Generated by MOE 12 Ignored bad PDB record found on line 132 HELIX 3 3 GLN A 60 LEU A 76 1 Generated by MOE 17 Ignored bad PDB record found on line 133 HELIX 4 4 ASN A 91 LEU A 94 1 Generated by MOE 4 Ignored bad PDB record found on line 134 HELIX 5 5 ARG A 104 ARG A 134 1 Generated by MOE 31 96 messages similar to the above omitted Summary of feedback from opening /Users/michael/Desktop/MOE Files/88309 and 88310 Docking/88310 25poses pose 15 MeV L Apo 909_942_1106_1110.pdb --- warnings | Ignored bad PDB record found on line 130 HELIX 1 1 THR A 22 TYR A 31 1 Generated by MOE 10 Ignored bad PDB record found on line 131 HELIX 2 2 THR A 44 ASN A 55 1 Generated by MOE 12 Ignored bad PDB record found on line 132 HELIX 3 3 GLN A 60 LEU A 76 1 Generated by MOE 17 Ignored bad PDB record found on line 133 HELIX 4 4 ASN A 91 LEU A 94 1 Generated by MOE 4 Ignored bad PDB record found on line 134 HELIX 5 5 ARG A 104 ARG A 134 1 Generated by MOE 31 96 messages similar to the above omitted Summary of feedback from opening /Users/michael/Desktop/MOE Files/88309 and 88310 Docking/88310 25poses pose 20 MeV L Apo 909_942_1106_1110.pdb --- warnings | Ignored bad PDB record found on line 130 HELIX 1 1 THR A 22 TYR A 31 1 Generated by MOE 10 Ignored bad PDB record found on line 131 HELIX 2 2 THR A 44 ASN A 55 1 Generated by MOE 12 Ignored bad PDB record found on line 132 HELIX 3 3 GLN A 60 LEU A 76 1 Generated by MOE 17 Ignored bad PDB record found on line 133 HELIX 4 4 ASN A 91 LEU A 94 1 Generated by MOE 4 Ignored bad PDB record found on line 134 HELIX 5 5 ARG A 104 ARG A 134 1 Generated by MOE 31 96 messages similar to the above omitted Summary of feedback from opening /Users/michael/Desktop/MOE Files/88309 and 88310 Docking/88310 25poses pose 25 MeV L Apo 909_942_1106_1110.pdb --- warnings | Ignored bad PDB record found on line 130 HELIX 1 1 THR A 22 TYR A 31 1 Generated by MOE 10 Ignored bad PDB record found on line 131 HELIX 2 2 THR A 44 ASN A 55 1 Generated by MOE 12 Ignored bad PDB record found on line 132 HELIX 3 3 GLN A 60 LEU A 76 1 Generated by MOE 17 Ignored bad PDB record found on line 133 HELIX 4 4 ASN A 91 LEU A 94 1 Generated by MOE 4 Ignored bad PDB record found on line 134 HELIX 5 5 ARG A 104 ARG A 134 1 Generated by MOE 31 96 messages similar to the above omitted Chain information for 88309 25poses pose 1 MeV L Apo 909_942_1106_1110.pdb #5 --- Chain | Description A | No description available B | No description available C | No description available D | No description available E | No description available Chain information for 88309 25poses pose 5 MeV L Apo 909_942_1106_1110.pdb #6 --- Chain | Description A | No description available B | No description available C | No description available D | No description available E | No description available Chain information for 88309 25poses pose 10 MeV L Apo 909_942_1106_1110.pdb #7 --- Chain | Description A | No description available B | No description available C | No description available D | No description available E | No description available Chain information for 88309 25poses pose 15 MeV L Apo 909_942_1106_1110.pdb #8 --- Chain | Description A | No description available B | No description available C | No description available D | No description available E | No description available Chain information for 88309 25poses pose 20 MeV L Apo 909_942_1106_1110.pdb #9 --- Chain | Description A | No description available B | No description available C | No description available D | No description available E | No description available Chain information for 88309 25poses pose 25 MeV L Apo 909_942_1106_1110.pdb #10 --- Chain | Description A | No description available B | No description available C | No description available D | No description available E | No description available Chain information for 88310 25poses pose 1 MeV L Apo 909_942_1106_1110.pdb #11 --- Chain | Description A | No description available B | No description available C | No description available D | No description available E | No description available Chain information for 88310 25poses pose 5 MeV L Apo 909_942_1106_1110.pdb #12 --- Chain | Description A | No description available B | No description available C | No description available D | No description available E | No description available Chain information for 88310 25poses pose 10 MeV L Apo 909_942_1106_1110.pdb #13 --- Chain | Description A | No description available B | No description available C | No description available D | No description available E | No description available Chain information for 88310 25poses pose 15 MeV L Apo 909_942_1106_1110.pdb #14 --- Chain | Description A | No description available B | No description available C | No description available D | No description available E | No description available Chain information for 88310 25poses pose 20 MeV L Apo 909_942_1106_1110.pdb #15 --- Chain | Description A | No description available B | No description available C | No description available D | No description available E | No description available Chain information for 88310 25poses pose 25 MeV L Apo 909_942_1106_1110.pdb #16 --- Chain | Description A | No description available B | No description available C | No description available D | No description available E | No description available > hide #!4 models > hide #!3 models > view clip false > style #!5-16 stick Changed 308172 atom styles > show #!5-16 cartoons Computing secondary structure > show #!5-16 cartoons > ui mousemode right select Drag select of 130788 atoms, 12084 residues, 36 pseudobonds, 121704 bonds > hide sel atoms Drag select of 696 atoms, 1032 residues, 648 bonds > hide sel atoms Drag select of 36320 atoms, 5400 residues, 33541 bonds > hide sel atoms Drag select of 18816 atoms, 2532 residues, 24 pseudobonds, 17466 bonds > hide sel atoms Drag select of 8811 atoms, 2808 residues, 12 pseudobonds, 8038 bonds > select clear Drag select of 7620 atoms, 2700 residues, 7044 bonds > hide sel atoms Drag select of 2772 atoms, 2604 residues, 2544 bonds > hide sel atoms > select clear > color #5 #0433ffff > color #6 #00fa92ff > color #7 #ff2600ff > color #5 #ff2600ff > color #6 #ff9300ff > color #7 #fffb00ff > color #8 #8efa00ff > color #9 #00f900ff > color #10 #00fa92ff > color #11 #00fdffff > color #12 #0096ffff > color #13 #0433ffff > color #14 #9437ffff > color #15 #ff40ffff > color #16 #ff2f92ff > view clip false > ui mousemode right translate > ui tool show ""Show Sequence Viewer"" > sequence chain #3/A #4/A #5/A #6/A #7/A #8/A #9/A #10/A #11/A #12/A #13/A > #14/A #15/A #16/A Alignment identifier is 8 > sequence chain #3/B #4/B #5/B #6/B #7/B #8/B #9/B #10/B #11/B #12/B #13/B > #14/B #15/B #16/B Alignment identifier is 9 > sequence chain #3/C #4/C #5/C #6/C #7/C #8/C #9/C #10/C #11/C #12/C #13/C > #14/C #15/C #16/C Alignment identifier is 10 > sequence chain #3/D #4/D #5/D #6/D #7/D #8/D #9/D #10/D #11/D #12/D #13/D > #14/D #15/D #16/D Alignment identifier is 11 > sequence chain #3/E #4/E #5/E #6/E #7/E #8/E #9/E #10/E #11/E #12/E #13/E > #14/E #15/E #16/E Alignment identifier is 12 > select #3/B:325 #4/B:325 #5/B:325 #6/B:325 #7/B:325 #8/B:325 #9/B:325 > #10/B:325 #11/B:325 #12/B:325 #13/B:325 #14/B:325 #15/B:325 #16/B:325 294 atoms, 280 bonds, 14 residues, 14 models selected > select #3/B #4/B #5/B #6/B #7/B #8/B #9/B #10/B #11/B #12/B #13/B #14/B > #15/B #16/B 16758 atoms, 16814 bonds, 14 pseudobonds, 1036 residues, 28 models selected 9 [ID: 9] region 14 chains [1-74] RMSD: 0.000 > hide sel & #!5-16 atoms > select clear > select #3/C:429-507 #4/C:429-507 #5/C:429-507 #6/C:429-507 #7/C:429-507 > #8/C:429-507 #9/C:429-507 #10/C:429-507 #11/C:429-507 #12/C:429-507 > #13/C:429-507 #14/C:429-507 #15/C:429-507 #16/C:429-507 18270 atoms, 18368 bonds, 1106 residues, 14 models selected 10 [ID: 10] region 14 chains [1-132] RMSD: 0.000 > hide sel & #!5-16 atoms > select #3/D:324-325 #4/D:324-325 #5/D:324-325 #6/D:324-325 #7/D:324-325 > #8/D:324-325 #9/D:324-325 #10/D:324-325 #11/D:324-325 #12/D:324-325 > #13/D:324-325 #14/D:324-325 #15/D:324-325 #16/D:324-325 602 atoms, 588 bonds, 28 residues, 14 models selected > select #3/D #4/D #5/D #6/D #7/D #8/D #9/D #10/D #11/D #12/D #13/D #14/D > #15/D #16/D 12950 atoms, 12978 bonds, 798 residues, 14 models selected 11 [ID: 11] region 14 chains [1-57] RMSD: 0.000 > hide sel & #!5-16 atoms > select #3/E:324-341 #4/E:324-341 #5/E:324-341 #6/E:324-341 #7/E:324-341 > #8/E:324-341 #9/E:324-341 #10/E:324-341 #11/E:324-341 #12/E:324-341 > #13/E:324-341 #14/E:324-341 #15/E:324-341 #16/E:324-341 4382 atoms, 4382 bonds, 252 residues, 14 models selected > select #3/E #4/E #5/E #6/E #7/E #8/E #9/E #10/E #11/E #12/E #13/E #14/E > #15/E #16/E 16506 atoms, 16590 bonds, 1036 residues, 14 models selected 12 [ID: 12] region 14 chains [1-74] RMSD: 0.000 > hide sel & #!5-16 atoms > select #3/A:7 #4/A:7 #5/A:7 #6/A:7 #7/A:7 #8/A:7 #9/A:7 #10/A:7 #11/A:7 > #12/A:7 #13/A:7 #14/A:7 #15/A:7 #16/A:7 224 atoms, 210 bonds, 14 residues, 14 models selected > select #3/A #4/A #5/A #6/A #7/A #8/A #9/A #10/A #11/A #12/A #13/A #14/A > #15/A #16/A 282436 atoms, 285572 bonds, 84 pseudobonds, 17542 residues, 28 models selected 8 [ID: 8] region 14 chains [1-1253] RMSD: 0.000 > hide sel & #!5-16 atoms > ui mousemode right select > select clear > ui mousemode right translate > select #3/A:991 #4/A:991 #5/A:991 #6/A:991 #7/A:991 #8/A:991 #9/A:991 > #10/A:991 #11/A:991 #12/A:991 #13/A:991 #14/A:991 #15/A:991 #16/A:991 280 atoms, 280 bonds, 14 residues, 14 models selected > select #3/A:991 #4/A:991 #5/A:991 #6/A:991 #7/A:991 #8/A:991 #9/A:991 > #10/A:991 #11/A:991 #12/A:991 #13/A:991 #14/A:991 #15/A:991 #16/A:991 280 atoms, 280 bonds, 14 residues, 14 models selected 8 [ID: 8] region 14 chains [903] RMSD: 0.000 > show sel & #!5-16 atoms > select #3/A:1024 #4/A:1024 #5/A:1024 #6/A:1024 #7/A:1024 #8/A:1024 #9/A:1024 > #10/A:1024 #11/A:1024 #12/A:1024 #13/A:1024 #14/A:1024 #15/A:1024 #16/A:1024 238 atoms, 238 bonds, 14 residues, 14 models selected > select #3/A:1024 #4/A:1024 #5/A:1024 #6/A:1024 #7/A:1024 #8/A:1024 #9/A:1024 > #10/A:1024 #11/A:1024 #12/A:1024 #13/A:1024 #14/A:1024 #15/A:1024 #16/A:1024 238 atoms, 238 bonds, 14 residues, 14 models selected 8 [ID: 8] region 14 chains [936] RMSD: 0.000 > show sel & #!5-16 atoms > select > #3/A:22-31,44-55,60-76,91-94,104-134,144-150,152-157,162-182,225-247,249-272,274-294,303-318,324-338,347-352,363-374,382-403,419-427,433-438,477-479,482-484,498-504,510-518,551-571,667-670,673-687,695-702,722-724,744-762,789-814,847-851,864-881,885-905,914-922,924-932,935-937,956-969,976-983,991-996,1009-1023,1038-1050,1057-1066,1068-1078,1082-1092,1097-1103,1106-1119,1133-1144,1146-1149,1162-1165,1177-1182,1233-1248,1253-1265,1271-1277,1303-1306,1330-1347 > #4/A:22-31,44-55,60-76,91-94,104-134,144-150,152-157,162-182,225-247,249-272,274-294,303-318,324-338,347-352,363-374,382-403,419-427,433-438,477-479,482-484,498-504,510-518,551-571,667-670,673-687,695-702,722-724,744-762,789-814,847-851,864-881,885-905,914-922,924-932,935-937,956-969,976-983,991-996,1009-1023,1038-1050,1057-1066,1068-1078,1082-1092,1097-1103,1106-1119,1133-1144,1146-1149,1162-1165,1177-1182,1233-1248,1253-1265,1271-1277,1303-1306,1330-1347 > #5/A:22-31,44-55,60-76,91-94,104-134,144-150,152-157,162-182,225-247,249-272,274-294,303-318,324-338,347-352,363-374,382-403,419-427,433-438,477-479,482-484,498-504,510-518,551-571,667-670,673-687,695-702,722-724,744-762,789-814,847-851,864-881,885-905,914-922,924-932,935-937,956-969,976-983,991-996,1009-1023,1038-1050,1057-1066,1068-1078,1082-1092,1097-1103,1106-1119,1133-1144,1146-1149,1162-1165,1177-1182,1233-1248,1253-1265,1271-1277,1303-1306,1330-1347 > #6/A:22-31,44-55,60-76,91-94,104-134,144-150,152-157,162-182,225-247,249-272,274-294,303-318,324-338,347-352,363-374,382-403,419-427,433-438,477-479,482-484,498-504,510-518,551-571,667-670,673-687,695-702,722-724,744-762,789-814,847-851,864-881,885-905,914-922,924-932,935-937,956-969,976-983,991-996,1009-1023,1038-1050,1057-1066,1068-1078,1082-1092,1097-1103,1106-1119,1133-1144,1146-1149,1162-1165,1177-1182,1233-1248,1253-1265,1271-1277,1303-1306,1330-1347 > #7/A:22-31,44-55,60-76,91-94,104-134,144-150,152-157,162-182,225-247,249-272,274-294,303-318,324-338,347-352,363-374,382-403,419-427,433-438,477-479,482-484,498-504,510-518,551-571,667-670,673-687,695-702,722-724,744-762,789-814,847-851,864-881,885-905,914-922,924-932,935-937,956-969,976-983,991-996,1009-1023,1038-1050,1057-1066,1068-1078,1082-1092,1097-1103,1106-1119,1133-1144,1146-1149,1162-1165,1177-1182,1233-1248,1253-1265,1271-1277,1303-1306,1330-1347 > #8/A:22-31,44-55,60-76,91-94,104-134,144-150,152-157,162-182,225-247,249-272,274-294,303-318,324-338,347-352,363-374,382-403,419-427,433-438,477-479,482-484,498-504,510-518,551-571,667-670,673-687,695-702,722-724,744-762,789-814,847-851,864-881,885-905,914-922,924-932,935-937,956-969,976-983,991-996,1009-1023,1038-1050,1057-1066,1068-1078,1082-1092,1097-1103,1106-1119,1133-1144,1146-1149,1162-1165,1177-1182,1233-1248,1253-1265,1271-1277,1303-1306,1330-1347 > #9/A:22-31,44-55,60-76,91-94,104-134,144-150,152-157,162-182,225-247,249-272,274-294,303-318,324-338,347-352,363-374,382-403,419-427,433-438,477-479,482-484,498-504,510-518,551-571,667-670,673-687,695-702,722-724,744-762,789-814,847-851,864-881,885-905,914-922,924-932,935-937,956-969,976-983,991-996,1009-1023,1038-1050,1057-1066,1068-1078,1082-1092,1097-1103,1106-1119,1133-1144,1146-1149,1162-1165,1177-1182,1233-1248,1253-1265,1271-1277,1303-1306,1330-1347 > #10/A:22-31,44-55,60-76,91-94,104-134,144-150,152-157,162-182,225-247,249-272,274-294,303-318,324-338,347-352,363-374,382-403,419-427,433-438,477-479,482-484,498-504,510-518,551-571,667-670,673-687,695-702,722-724,744-762,789-814,847-851,864-881,885-905,914-922,924-932,935-937,956-969,976-983,991-996,1009-1023,1038-1050,1057-1066,1068-1078,1082-1092,1097-1103,1106-1119,1133-1144,1146-1149,1162-1165,1177-1182,1233-1248,1253-1265,1271-1277,1303-1306,1330-1347 > #11/A:22-31,44-55,60-76,91-94,104-134,144-150,152-157,162-182,225-247,249-272,274-294,303-318,324-338,347-352,363-374,382-403,419-427,433-438,477-479,482-484,498-504,510-518,551-571,667-670,673-687,695-702,722-724,744-762,789-814,847-851,864-881,885-905,914-922,924-932,935-937,956-969,976-983,991-996,1009-1023,1038-1050,1057-1066,1068-1078,1082-1092,1097-1103,1106-1119,1133-1144,1146-1149,1162-1165,1177-1182,1233-1248,1253-1265,1271-1277,1303-1306,1330-1347 > #12/A:22-31,44-55,60-76,91-94,104-134,144-150,152-157,162-182,225-247,249-272,274-294,303-318,324-338,347-352,363-374,382-403,419-427,433-438,477-479,482-484,498-504,510-518,551-571,667-670,673-687,695-702,722-724,744-762,789-814,847-851,864-881,885-905,914-922,924-932,935-937,956-969,976-983,991-996,1009-1023,1038-1050,1057-1066,1068-1078,1082-1092,1097-1103,1106-1119,1133-1144,1146-1149,1162-1165,1177-1182,1233-1248,1253-1265,1271-1277,1303-1306,1330-1347 > #13/A:22-31,44-55,60-76,91-94,104-134,144-150,152-157,162-182,225-247,249-272,274-294,303-318,324-338,347-352,363-374,382-403,419-427,433-438,477-479,482-484,498-504,510-518,551-571,667-670,673-687,695-702,722-724,744-762,789-814,847-851,864-881,885-905,914-922,924-932,935-937,956-969,976-983,991-996,1009-1023,1038-1050,1057-1066,1068-1078,1082-1092,1097-1103,1106-1119,1133-1144,1146-1149,1162-1165,1177-1182,1233-1248,1253-1265,1271-1277,1303-1306,1330-1347 > #14/A:22-31,44-55,60-76,91-94,104-134,144-150,152-157,162-182,225-247,249-272,274-294,303-318,324-338,347-352,363-374,382-403,419-427,433-438,477-479,482-484,498-504,510-518,551-571,667-670,673-687,695-702,722-724,744-762,789-814,847-851,864-881,885-905,914-922,924-932,935-937,956-969,976-983,991-996,1009-1023,1038-1050,1057-1066,1068-1078,1082-1092,1097-1103,1106-1119,1133-1144,1146-1149,1162-1165,1177-1182,1233-1248,1253-1265,1271-1277,1303-1306,1330-1347 > #15/A:22-31,44-55,60-76,91-94,104-134,144-150,152-157,162-182,225-247,249-272,274-294,303-318,324-338,347-352,363-374,382-403,419-427,433-438,477-479,482-484,498-504,510-518,551-571,667-670,673-687,695-702,722-724,744-762,789-814,847-851,864-881,885-905,914-922,924-932,935-937,956-969,976-983,991-996,1009-1023,1038-1050,1057-1066,1068-1078,1082-1092,1097-1103,1106-1119,1133-1144,1146-1149,1162-1165,1177-1182,1233-1248,1253-1265,1271-1277,1303-1306,1330-1347 > #16/A:22-31,44-55,60-76,91-94,104-134,144-150,152-157,162-182,225-247,249-272,274-294,303-318,324-338,347-352,363-374,382-403,419-427,433-438,477-479,482-484,498-504,510-518,551-571,667-670,673-687,695-702,722-724,744-762,789-814,847-851,864-881,885-905,914-922,924-932,935-937,956-969,976-983,991-996,1009-1023,1038-1050,1057-1066,1068-1078,1082-1092,1097-1103,1106-1119,1133-1144,1146-1149,1162-1165,1177-1182,1233-1248,1253-1265,1271-1277,1303-1306,1330-1347 147770 atoms, 148330 bonds, 8932 residues, 14 models selected > select #3/A:7 #4/A:7 #5/A:7 #6/A:7 #7/A:7 #8/A:7 #9/A:7 #10/A:7 #11/A:7 > #12/A:7 #13/A:7 #14/A:7 #15/A:7 #16/A:7 224 atoms, 210 bonds, 14 residues, 14 models selected > select #3/A #4/A #5/A #6/A #7/A #8/A #9/A #10/A #11/A #12/A #13/A #14/A > #15/A #16/A 282436 atoms, 285572 bonds, 84 pseudobonds, 17542 residues, 28 models selected 8 [ID: 8] region 14 chains [1-1253] RMSD: 0.000 > hide sel & #!5-16 atoms > ui mousemode right select > select clear > ui mousemode right translate > select #3/A:7 #4/A:7 #5/A:7 #6/A:7 #7/A:7 #8/A:7 #9/A:7 #10/A:7 #11/A:7 > #12/A:7 #13/A:7 #14/A:7 #15/A:7 #16/A:7 224 atoms, 210 bonds, 14 residues, 14 models selected > select #3/A:7 #4/A:7 #5/A:7 #6/A:7 #7/A:7 #8/A:7 #9/A:7 #10/A:7 #11/A:7 > #12/A:7 #13/A:7 #14/A:7 #15/A:7 #16/A:7 224 atoms, 210 bonds, 14 residues, 14 models selected 8 [ID: 8] region 14 chains [1] RMSD: 0.000 > select #3/A:909 #4/A:909 #5/A:909 #6/A:909 #7/A:909 #8/A:909 #9/A:909 > #10/A:909 #11/A:909 #12/A:909 #13/A:909 #14/A:909 #15/A:909 #16/A:909 196 atoms, 182 bonds, 14 residues, 14 models selected > select #3/A:909 #4/A:909 #5/A:909 #6/A:909 #7/A:909 #8/A:909 #9/A:909 > #10/A:909 #11/A:909 #12/A:909 #13/A:909 #14/A:909 #15/A:909 #16/A:909 196 atoms, 182 bonds, 14 residues, 14 models selected 8 [ID: 8] region 14 chains [821] RMSD: 0.000 > show sel & #!5-16 atoms > select #3/A:942-943 #4/A:942-943 #5/A:942-943 #6/A:942-943 #7/A:942-943 > #8/A:942-943 #9/A:942-943 #10/A:942-943 #11/A:942-943 #12/A:942-943 > #13/A:942-943 #14/A:942-943 #15/A:942-943 #16/A:942-943 560 atoms, 560 bonds, 28 residues, 14 models selected > select #3/A:942 #4/A:942 #5/A:942 #6/A:942 #7/A:942 #8/A:942 #9/A:942 > #10/A:942 #11/A:942 #12/A:942 #13/A:942 #14/A:942 #15/A:942 #16/A:942 294 atoms, 294 bonds, 14 residues, 14 models selected 8 [ID: 8] region 14 chains [854] RMSD: 0.000 > select #3/A:942 #4/A:942 #5/A:942 #6/A:942 #7/A:942 #8/A:942 #9/A:942 > #10/A:942 #11/A:942 #12/A:942 #13/A:942 #14/A:942 #15/A:942 #16/A:942 294 atoms, 294 bonds, 14 residues, 14 models selected > select #3/A:942 #4/A:942 #5/A:942 #6/A:942 #7/A:942 #8/A:942 #9/A:942 > #10/A:942 #11/A:942 #12/A:942 #13/A:942 #14/A:942 #15/A:942 #16/A:942 294 atoms, 294 bonds, 14 residues, 14 models selected 8 [ID: 8] region 14 chains [854] RMSD: 0.000 > show sel & #!5-16 atoms > select #3/A:1106 #4/A:1106 #5/A:1106 #6/A:1106 #7/A:1106 #8/A:1106 #9/A:1106 > #10/A:1106 #11/A:1106 #12/A:1106 #13/A:1106 #14/A:1106 #15/A:1106 #16/A:1106 294 atoms, 294 bonds, 14 residues, 14 models selected > select #3/A:1106 #4/A:1106 #5/A:1106 #6/A:1106 #7/A:1106 #8/A:1106 #9/A:1106 > #10/A:1106 #11/A:1106 #12/A:1106 #13/A:1106 #14/A:1106 #15/A:1106 #16/A:1106 294 atoms, 294 bonds, 14 residues, 14 models selected 8 [ID: 8] region 14 chains [1018] RMSD: 0.000 > show sel & #!5-16 atoms > select #3/A:1110 #4/A:1110 #5/A:1110 #6/A:1110 #7/A:1110 #8/A:1110 #9/A:1110 > #10/A:1110 #11/A:1110 #12/A:1110 #13/A:1110 #14/A:1110 #15/A:1110 #16/A:1110 238 atoms, 224 bonds, 14 residues, 14 models selected > select #3/A:1110 #4/A:1110 #5/A:1110 #6/A:1110 #7/A:1110 #8/A:1110 #9/A:1110 > #10/A:1110 #11/A:1110 #12/A:1110 #13/A:1110 #14/A:1110 #15/A:1110 #16/A:1110 238 atoms, 224 bonds, 14 residues, 14 models selected 8 [ID: 8] region 14 chains [1022] RMSD: 0.000 > show sel & #!5-16 atoms > color (#!5-16 & sel) light gray > select #3/A:1106 #4/A:1106 #5/A:1106 #6/A:1106 #7/A:1106 #8/A:1106 #9/A:1106 > #10/A:1106 #11/A:1106 #12/A:1106 #13/A:1106 #14/A:1106 #15/A:1106 #16/A:1106 294 atoms, 294 bonds, 14 residues, 14 models selected > select #3/A:1106 #4/A:1106 #5/A:1106 #6/A:1106 #7/A:1106 #8/A:1106 #9/A:1106 > #10/A:1106 #11/A:1106 #12/A:1106 #13/A:1106 #14/A:1106 #15/A:1106 #16/A:1106 294 atoms, 294 bonds, 14 residues, 14 models selected 8 [ID: 8] region 14 chains [1018] RMSD: 0.000 > color (#!5-16 & sel) light gray > select #3/A:942 #4/A:942 #5/A:942 #6/A:942 #7/A:942 #8/A:942 #9/A:942 > #10/A:942 #11/A:942 #12/A:942 #13/A:942 #14/A:942 #15/A:942 #16/A:942 294 atoms, 294 bonds, 14 residues, 14 models selected > select #3/A:942 #4/A:942 #5/A:942 #6/A:942 #7/A:942 #8/A:942 #9/A:942 > #10/A:942 #11/A:942 #12/A:942 #13/A:942 #14/A:942 #15/A:942 #16/A:942 294 atoms, 294 bonds, 14 residues, 14 models selected 8 [ID: 8] region 14 chains [854] RMSD: 0.000 > color (#!5-16 & sel) light gray > select #3/A:909 #4/A:909 #5/A:909 #6/A:909 #7/A:909 #8/A:909 #9/A:909 > #10/A:909 #11/A:909 #12/A:909 #13/A:909 #14/A:909 #15/A:909 #16/A:909 196 atoms, 182 bonds, 14 residues, 14 models selected > select #3/A:909 #4/A:909 #5/A:909 #6/A:909 #7/A:909 #8/A:909 #9/A:909 > #10/A:909 #11/A:909 #12/A:909 #13/A:909 #14/A:909 #15/A:909 #16/A:909 196 atoms, 182 bonds, 14 residues, 14 models selected 8 [ID: 8] region 14 chains [821] RMSD: 0.000 > color (#!5-16 & sel) light gray > ui mousemode right select > select clear > ui mousemode right translate > ui mousemode right clip > ui mousemode right translate > hide #!11 models > hide #!12 models > hide #!13 models > hide #!14 models > hide #!15 models > hide #!16 models > save /Users/michael/Desktop/image1.png supersample 3 > show #!11 models > show #!12 models > show #!13 models > show #!14 models > show #!15 models > show #!16 models > hide #!5 models > hide #!6 models > hide #!7 models > hide #!8 models > hide #!9 models > hide #!10 models > save /Users/michael/Desktop/image2.png supersample 3 > set bgColor white > save /Users/michael/Desktop/image3.png supersample 3 > show #!10 models > show #!9 models > show #!8 models > show #!7 models > show #!6 models > show #!5 models > hide #!11 models > hide #!12 models > hide #!13 models > hide #!14 models > hide #!15 models > hide #!16 models > save /Users/michael/Desktop/image4.png supersample 3 > ui mousemode right select > select #5/A:942 21 atoms, 21 bonds, 1 residue, 1 model selected > select #5/A:1110 17 atoms, 16 bonds, 1 residue, 1 model selected > select #5/A:1106@HE1 1 atom, 1 residue, 1 model selected > select #5/A:909 14 atoms, 13 bonds, 1 residue, 1 model selected > open ""/Users/michael/Desktop/MOE Files/88309 and 88310 Docking/88309 25poses > pose 1 MeV L Elongation Homology 909_942_1106_1110.pdb"" > ""/Users/michael/Desktop/MOE Files/88309 and 88310 Docking/88309 25poses pose > 5 MeV L Elongation Homology 909_942_1106_1110.pdb"" > ""/Users/michael/Desktop/MOE Files/88309 and 88310 Docking/88309 25poses pose > 10 MeV L Elongation Homology 909_942_1106_1110.pdb"" > ""/Users/michael/Desktop/MOE Files/88309 and 88310 Docking/88309 25poses pose > 15 MeV L Elongation Homology 909_942_1106_1110.pdb"" > ""/Users/michael/Desktop/MOE Files/88309 and 88310 Docking/88309 25poses pose > 20 MeV L Elongation Homology 909_942_1106_1110.pdb"" > ""/Users/michael/Desktop/MOE Files/88309 and 88310 Docking/88309 25poses pose > 25 MeV L Elongation Homology 909_942_1106_1110.pdb"" > ""/Users/michael/Desktop/MOE Files/88309 and 88310 Docking/88310 25poses pose > 1 MeV L Elongation Homology 909_942_1106_1110.pdb"" > ""/Users/michael/Desktop/MOE Files/88309 and 88310 Docking/88310 25poses pose > 5 MeV L Elongation Homology 909_942_1106_1110.pdb"" > ""/Users/michael/Desktop/MOE Files/88309 and 88310 Docking/88310 25poses pose > 10 MeV L Elongation Homology 909_942_1106_1110.pdb"" > ""/Users/michael/Desktop/MOE Files/88309 and 88310 Docking/88310 25poses pose > 15 MeV L Elongation Homology 909_942_1106_1110.pdb"" > ""/Users/michael/Desktop/MOE Files/88309 and 88310 Docking/88310 25poses pose > 20 MeV L Elongation Homology 909_942_1106_1110.pdb"" > ""/Users/michael/Desktop/MOE Files/88309 and 88310 Docking/88310 25poses pose > 25 MeV L Elongation Homology 909_942_1106_1110.pdb"" Summary of feedback from opening /Users/michael/Desktop/MOE Files/88309 and 88310 Docking/88309 25poses pose 1 MeV L Elongation Homology 909_942_1106_1110.pdb --- warnings | Ignored bad PDB record found on line 173 HELIX 1 1 THR F 22 ALA F 32 1 Generated by MOE 11 Ignored bad PDB record found on line 174 HELIX 2 2 PRO F 43 LYS F 54 1 Generated by MOE 12 Ignored bad PDB record found on line 175 HELIX 3 3 GLN F 60 LYS F 75 1 Generated by MOE 16 Ignored bad PDB record found on line 176 HELIX 4 4 TYR F 79 ALA F 81 5 Generated by MOE 3 Ignored bad PDB record found on line 177 HELIX 5 5 TYR F 87 LEU F 94 1 Generated by MOE 8 143 messages similar to the above omitted Summary of feedback from opening /Users/michael/Desktop/MOE Files/88309 and 88310 Docking/88309 25poses pose 5 MeV L Elongation Homology 909_942_1106_1110.pdb --- warnings | Ignored bad PDB record found on line 173 HELIX 1 1 THR F 22 ALA F 32 1 Generated by MOE 11 Ignored bad PDB record found on line 174 HELIX 2 2 PRO F 43 LYS F 54 1 Generated by MOE 12 Ignored bad PDB record found on line 175 HELIX 3 3 GLN F 60 LYS F 75 1 Generated by MOE 16 Ignored bad PDB record found on line 176 HELIX 4 4 TYR F 79 ALA F 81 5 Generated by MOE 3 Ignored bad PDB record found on line 177 HELIX 5 5 TYR F 87 LEU F 94 1 Generated by MOE 8 143 messages similar to the above omitted Summary of feedback from opening /Users/michael/Desktop/MOE Files/88309 and 88310 Docking/88309 25poses pose 10 MeV L Elongation Homology 909_942_1106_1110.pdb --- warnings | Ignored bad PDB record found on line 173 HELIX 1 1 THR F 22 ALA F 32 1 Generated by MOE 11 Ignored bad PDB record found on line 174 HELIX 2 2 PRO F 43 LYS F 54 1 Generated by MOE 12 Ignored bad PDB record found on line 175 HELIX 3 3 GLN F 60 LYS F 75 1 Generated by MOE 16 Ignored bad PDB record found on line 176 HELIX 4 4 TYR F 79 ALA F 81 5 Generated by MOE 3 Ignored bad PDB record found on line 177 HELIX 5 5 TYR F 87 LEU F 94 1 Generated by MOE 8 143 messages similar to the above omitted Summary of feedback from opening /Users/michael/Desktop/MOE Files/88309 and 88310 Docking/88309 25poses pose 15 MeV L Elongation Homology 909_942_1106_1110.pdb --- warnings | Ignored bad PDB record found on line 173 HELIX 1 1 THR F 22 ALA F 32 1 Generated by MOE 11 Ignored bad PDB record found on line 174 HELIX 2 2 PRO F 43 LYS F 54 1 Generated by MOE 12 Ignored bad PDB record found on line 175 HELIX 3 3 GLN F 60 LYS F 75 1 Generated by MOE 16 Ignored bad PDB record found on line 176 HELIX 4 4 TYR F 79 ALA F 81 5 Generated by MOE 3 Ignored bad PDB record found on line 177 HELIX 5 5 TYR F 87 LEU F 94 1 Generated by MOE 8 143 messages similar to the above omitted Summary of feedback from opening /Users/michael/Desktop/MOE Files/88309 and 88310 Docking/88309 25poses pose 20 MeV L Elongation Homology 909_942_1106_1110.pdb --- warnings | Ignored bad PDB record found on line 173 HELIX 1 1 THR F 22 ALA F 32 1 Generated by MOE 11 Ignored bad PDB record found on line 174 HELIX 2 2 PRO F 43 LYS F 54 1 Generated by MOE 12 Ignored bad PDB record found on line 175 HELIX 3 3 GLN F 60 LYS F 75 1 Generated by MOE 16 Ignored bad PDB record found on line 176 HELIX 4 4 TYR F 79 ALA F 81 5 Generated by MOE 3 Ignored bad PDB record found on line 177 HELIX 5 5 TYR F 87 LEU F 94 1 Generated by MOE 8 143 messages similar to the above omitted Summary of feedback from opening /Users/michael/Desktop/MOE Files/88309 and 88310 Docking/88309 25poses pose 25 MeV L Elongation Homology 909_942_1106_1110.pdb --- warnings | Ignored bad PDB record found on line 173 HELIX 1 1 THR F 22 ALA F 32 1 Generated by MOE 11 Ignored bad PDB record found on line 174 HELIX 2 2 PRO F 43 LYS F 54 1 Generated by MOE 12 Ignored bad PDB record found on line 175 HELIX 3 3 GLN F 60 LYS F 75 1 Generated by MOE 16 Ignored bad PDB record found on line 176 HELIX 4 4 TYR F 79 ALA F 81 5 Generated by MOE 3 Ignored bad PDB record found on line 177 HELIX 5 5 TYR F 87 LEU F 94 1 Generated by MOE 8 143 messages similar to the above omitted Summary of feedback from opening /Users/michael/Desktop/MOE Files/88309 and 88310 Docking/88310 25poses pose 1 MeV L Elongation Homology 909_942_1106_1110.pdb --- warnings | Ignored bad PDB record found on line 173 HELIX 1 1 THR F 22 ALA F 32 1 Generated by MOE 11 Ignored bad PDB record found on line 174 HELIX 2 2 PRO F 43 LYS F 54 1 Generated by MOE 12 Ignored bad PDB record found on line 175 HELIX 3 3 GLN F 60 LYS F 75 1 Generated by MOE 16 Ignored bad PDB record found on line 176 HELIX 4 4 TYR F 79 ALA F 81 5 Generated by MOE 3 Ignored bad PDB record found on line 177 HELIX 5 5 TYR F 87 LEU F 94 1 Generated by MOE 8 143 messages similar to the above omitted Summary of feedback from opening /Users/michael/Desktop/MOE Files/88309 and 88310 Docking/88310 25poses pose 5 MeV L Elongation Homology 909_942_1106_1110.pdb --- warnings | Ignored bad PDB record found on line 173 HELIX 1 1 THR F 22 ALA F 32 1 Generated by MOE 11 Ignored bad PDB record found on line 174 HELIX 2 2 PRO F 43 LYS F 54 1 Generated by MOE 12 Ignored bad PDB record found on line 175 HELIX 3 3 GLN F 60 LYS F 75 1 Generated by MOE 16 Ignored bad PDB record found on line 176 HELIX 4 4 TYR F 79 ALA F 81 5 Generated by MOE 3 Ignored bad PDB record found on line 177 HELIX 5 5 TYR F 87 LEU F 94 1 Generated by MOE 8 143 messages similar to the above omitted Summary of feedback from opening /Users/michael/Desktop/MOE Files/88309 and 88310 Docking/88310 25poses pose 10 MeV L Elongation Homology 909_942_1106_1110.pdb --- warnings | Ignored bad PDB record found on line 173 HELIX 1 1 THR F 22 ALA F 32 1 Generated by MOE 11 Ignored bad PDB record found on line 174 HELIX 2 2 PRO F 43 LYS F 54 1 Generated by MOE 12 Ignored bad PDB record found on line 175 HELIX 3 3 GLN F 60 LYS F 75 1 Generated by MOE 16 Ignored bad PDB record found on line 176 HELIX 4 4 TYR F 79 ALA F 81 5 Generated by MOE 3 Ignored bad PDB record found on line 177 HELIX 5 5 TYR F 87 LEU F 94 1 Generated by MOE 8 143 messages similar to the above omitted Summary of feedback from opening /Users/michael/Desktop/MOE Files/88309 and 88310 Docking/88310 25poses pose 15 MeV L Elongation Homology 909_942_1106_1110.pdb --- warnings | Ignored bad PDB record found on line 173 HELIX 1 1 THR F 22 ALA F 32 1 Generated by MOE 11 Ignored bad PDB record found on line 174 HELIX 2 2 PRO F 43 LYS F 54 1 Generated by MOE 12 Ignored bad PDB record found on line 175 HELIX 3 3 GLN F 60 LYS F 75 1 Generated by MOE 16 Ignored bad PDB record found on line 176 HELIX 4 4 TYR F 79 ALA F 81 5 Generated by MOE 3 Ignored bad PDB record found on line 177 HELIX 5 5 TYR F 87 LEU F 94 1 Generated by MOE 8 143 messages similar to the above omitted Summary of feedback from opening /Users/michael/Desktop/MOE Files/88309 and 88310 Docking/88310 25poses pose 20 MeV L Elongation Homology 909_942_1106_1110.pdb --- warnings | Ignored bad PDB record found on line 173 HELIX 1 1 THR F 22 ALA F 32 1 Generated by MOE 11 Ignored bad PDB record found on line 174 HELIX 2 2 PRO F 43 LYS F 54 1 Generated by MOE 12 Ignored bad PDB record found on line 175 HELIX 3 3 GLN F 60 LYS F 75 1 Generated by MOE 16 Ignored bad PDB record found on line 176 HELIX 4 4 TYR F 79 ALA F 81 5 Generated by MOE 3 Ignored bad PDB record found on line 177 HELIX 5 5 TYR F 87 LEU F 94 1 Generated by MOE 8 143 messages similar to the above omitted Summary of feedback from opening /Users/michael/Desktop/MOE Files/88309 and 88310 Docking/88310 25poses pose 25 MeV L Elongation Homology 909_942_1106_1110.pdb --- warnings | Ignored bad PDB record found on line 173 HELIX 1 1 THR F 22 ALA F 32 1 Generated by MOE 11 Ignored bad PDB record found on line 174 HELIX 2 2 PRO F 43 LYS F 54 1 Generated by MOE 12 Ignored bad PDB record found on line 175 HELIX 3 3 GLN F 60 LYS F 75 1 Generated by MOE 16 Ignored bad PDB record found on line 176 HELIX 4 4 TYR F 79 ALA F 81 5 Generated by MOE 3 Ignored bad PDB record found on line 177 HELIX 5 5 TYR F 87 LEU F 94 1 Generated by MOE 8 143 messages similar to the above omitted Chain information for 88309 25poses pose 1 MeV L Elongation Homology 909_942_1106_1110.pdb #17 --- Chain | Description F | No description available Chain information for 88309 25poses pose 5 MeV L Elongation Homology 909_942_1106_1110.pdb #18 --- Chain | Description F | No description available Chain information for 88309 25poses pose 10 MeV L Elongation Homology 909_942_1106_1110.pdb #19 --- Chain | Description F | No description available Chain information for 88309 25poses pose 15 MeV L Elongation Homology 909_942_1106_1110.pdb #20 --- Chain | Description F | No description available Chain information for 88309 25poses pose 20 MeV L Elongation Homology 909_942_1106_1110.pdb #21 --- Chain | Description F | No description available Chain information for 88309 25poses pose 25 MeV L Elongation Homology 909_942_1106_1110.pdb #22 --- Chain | Description F | No description available Chain information for 88310 25poses pose 1 MeV L Elongation Homology 909_942_1106_1110.pdb #23 --- Chain | Description F | No description available Chain information for 88310 25poses pose 5 MeV L Elongation Homology 909_942_1106_1110.pdb #24 --- Chain | Description F | No description available Chain information for 88310 25poses pose 10 MeV L Elongation Homology 909_942_1106_1110.pdb #25 --- Chain | Description F | No description available Chain information for 88310 25poses pose 15 MeV L Elongation Homology 909_942_1106_1110.pdb #26 --- Chain | Description F | No description available Chain information for 88310 25poses pose 20 MeV L Elongation Homology 909_942_1106_1110.pdb #27 --- Chain | Description F | No description available Chain information for 88310 25poses pose 25 MeV L Elongation Homology 909_942_1106_1110.pdb #28 --- Chain | Description F | No description available Computing secondary structure > ui tool show ""Similar Structures"" > align Missing or invalid ""atoms"" argument: empty atom specifier > select add #5 25679 atoms, 25926 bonds, 8 pseudobonds, 1591 residues, 2 models selected > select subtract #5 Nothing selected > hide #!5 models > hide #!6 models > hide #!7 models > hide #!8 models > hide #!9 models > hide #!10 models > color #17 #941100ff > color #18 #945200ff > color #19 #929000ff > color #20 #4f8f00ff > color #21 #008f00ff > color #22 #009051ff > color #23 #009193ff > color #24 #005493ff > color #25 #011993ff > color #26 #531b93ff > color #27 #942193ff > color #28 #941751ff > ui mousemode right translate > hide #17 models > show #17 models > ui tool show ""Show Sequence Viewer"" > sequence chain #17/F #18/F #19/F #20/F #21/F #22/F #23/F #24/F #25/F #26/F > #27/F #28/F Alignment identifier is 13 > select #17/F:909-910 #18/F:909-910 #19/F:909-910 #20/F:909-910 #21/F:909-910 > #22/F:909-910 #23/F:909-910 #24/F:909-910 #25/F:909-910 #26/F:909-910 > #27/F:909-910 #28/F:909-910 300 atoms, 288 bonds, 24 residues, 12 models selected > select #17/F:909-910 #18/F:909-910 #19/F:909-910 #20/F:909-910 #21/F:909-910 > #22/F:909-910 #23/F:909-910 #24/F:909-910 #25/F:909-910 #26/F:909-910 > #27/F:909-910 #28/F:909-910 300 atoms, 288 bonds, 24 residues, 12 models selected 13 [ID: 13] region 12 chains [905-906] RMSD: 0.000 > select #17/F:909 #18/F:909 #19/F:909 #20/F:909 #21/F:909 #22/F:909 #23/F:909 > #24/F:909 #25/F:909 #26/F:909 #27/F:909 #28/F:909 168 atoms, 156 bonds, 12 residues, 12 models selected > select #17/F:909 #18/F:909 #19/F:909 #20/F:909 #21/F:909 #22/F:909 #23/F:909 > #24/F:909 #25/F:909 #26/F:909 #27/F:909 #28/F:909 168 atoms, 156 bonds, 12 residues, 12 models selected 13 [ID: 13] region 12 chains [905] RMSD: 0.000 > select #17/F:909 #18/F:909 #19/F:909 #20/F:909 #21/F:909 #22/F:909 #23/F:909 > #24/F:909 #25/F:909 #26/F:909 #27/F:909 #28/F:909 168 atoms, 156 bonds, 12 residues, 12 models selected > select #17/F:909 #18/F:909 #19/F:909 #20/F:909 #21/F:909 #22/F:909 #23/F:909 > #24/F:909 #25/F:909 #26/F:909 #27/F:909 #28/F:909 168 atoms, 156 bonds, 12 residues, 12 models selected 13 [ID: 13] region 12 chains [905] RMSD: 0.000 > show sel atoms > color sel light gray > select #17/F:942-943 #18/F:942-943 #19/F:942-943 #20/F:942-943 #21/F:942-943 > #22/F:942-943 #23/F:942-943 #24/F:942-943 #25/F:942-943 #26/F:942-943 > #27/F:942-943 #28/F:942-943 480 atoms, 480 bonds, 24 residues, 12 models selected > select #17/F:942-943 #18/F:942-943 #19/F:942-943 #20/F:942-943 #21/F:942-943 > #22/F:942-943 #23/F:942-943 #24/F:942-943 #25/F:942-943 #26/F:942-943 > #27/F:942-943 #28/F:942-943 480 atoms, 480 bonds, 24 residues, 12 models selected 13 [ID: 13] region 12 chains [938-939] RMSD: 0.000 > select #17/F:942 #18/F:942 #19/F:942 #20/F:942 #21/F:942 #22/F:942 #23/F:942 > #24/F:942 #25/F:942 #26/F:942 #27/F:942 #28/F:942 252 atoms, 252 bonds, 12 residues, 12 models selected > select #17/F:942 #18/F:942 #19/F:942 #20/F:942 #21/F:942 #22/F:942 #23/F:942 > #24/F:942 #25/F:942 #26/F:942 #27/F:942 #28/F:942 252 atoms, 252 bonds, 12 residues, 12 models selected 13 [ID: 13] region 12 chains [938] RMSD: 0.000 > show sel atoms > color sel light gray > select #17/F:1106 #18/F:1106 #19/F:1106 #20/F:1106 #21/F:1106 #22/F:1106 > #23/F:1106 #24/F:1106 #25/F:1106 #26/F:1106 #27/F:1106 #28/F:1106 252 atoms, 252 bonds, 12 residues, 12 models selected > select #17/F:1106 #18/F:1106 #19/F:1106 #20/F:1106 #21/F:1106 #22/F:1106 > #23/F:1106 #24/F:1106 #25/F:1106 #26/F:1106 #27/F:1106 #28/F:1106 252 atoms, 252 bonds, 12 residues, 12 models selected 13 [ID: 13] region 12 chains [1102] RMSD: 0.000 > show sel atoms > color sel light gray > select #17/F:1110-1111 #18/F:1110-1111 #19/F:1110-1111 #20/F:1110-1111 > #21/F:1110-1111 #22/F:1110-1111 #23/F:1110-1111 #24/F:1110-1111 > #25/F:1110-1111 #26/F:1110-1111 #27/F:1110-1111 #28/F:1110-1111 444 atoms, 444 bonds, 24 residues, 12 models selected > select #17/F:1110-1111 #18/F:1110-1111 #19/F:1110-1111 #20/F:1110-1111 > #21/F:1110-1111 #22/F:1110-1111 #23/F:1110-1111 #24/F:1110-1111 > #25/F:1110-1111 #26/F:1110-1111 #27/F:1110-1111 #28/F:1110-1111 444 atoms, 444 bonds, 24 residues, 12 models selected 13 [ID: 13] region 12 chains [1106-1107] RMSD: 0.000 > select #17/F:1110 #18/F:1110 #19/F:1110 #20/F:1110 #21/F:1110 #22/F:1110 > #23/F:1110 #24/F:1110 #25/F:1110 #26/F:1110 #27/F:1110 #28/F:1110 204 atoms, 192 bonds, 12 residues, 12 models selected > select #17/F:1110 #18/F:1110 #19/F:1110 #20/F:1110 #21/F:1110 #22/F:1110 > #23/F:1110 #24/F:1110 #25/F:1110 #26/F:1110 #27/F:1110 #28/F:1110 204 atoms, 192 bonds, 12 residues, 12 models selected 13 [ID: 13] region 12 chains [1106] RMSD: 0.000 > show sel atoms > color sel light gray > ui mousemode right select > select #17/F:858 15 atoms, 14 bonds, 1 residue, 1 model selected > select #17/F:858 15 atoms, 14 bonds, 1 residue, 1 model selected > hide sel atoms > select #17/F:858 15 atoms, 14 bonds, 1 residue, 1 model selected Drag select of 96 residues, 6 atoms, 4 bonds Drag select of 48 atoms, 480 residues, 43 bonds Drag select of 432 residues, 2 atoms, 2 bonds > hide sel atoms > select #17/F:1101 14 atoms, 13 bonds, 1 residue, 1 model selected > select #17/F:1102 24 atoms, 23 bonds, 1 residue, 1 model selected > select #17/F:863 15 atoms, 14 bonds, 1 residue, 1 model selected > select #17/F:863 15 atoms, 14 bonds, 1 residue, 1 model selected > select clear > select #17/F:862 12 atoms, 11 bonds, 1 residue, 1 model selected > select #17/F:863 15 atoms, 14 bonds, 1 residue, 1 model selected Drag select of 132 residues, 5 atoms, 6 bonds Drag select of 180 residues, 15 atoms, 3 bonds Drag select of 48 residues Drag select of 372 residues, 40 atoms, 30 bonds > select #17/F:5-88 #18/F:5-88 #19/F:5-88 #20/F:5-88 #21/F:5-88 #22/F:5-88 > #23/F:5-88 #24/F:5-88 #25/F:5-88 #26/F:5-88 #27/F:5-88 #28/F:5-88 16296 atoms, 16500 bonds, 1008 residues, 12 models selected > select #17/F #18/F #19/F #20/F #21/F #22/F #23/F #24/F #25/F #26/F #27/F > #28/F 418728 atoms, 423324 bonds, 26124 residues, 12 models selected 13 [ID: 13] region 12 chains [1-2177] RMSD: 0.000 > hide sel atoms > select clear > select #17/F:1110 17 atoms, 16 bonds, 1 residue, 1 model selected > show sel atoms > select #17/F:1106 21 atoms, 21 bonds, 1 residue, 1 model selected > show sel atoms > select #17/F:909 14 atoms, 13 bonds, 1 residue, 1 model selected > show sel atoms > select #17/F:942 21 atoms, 21 bonds, 1 residue, 1 model selected > show sel atoms > ui mousemode right translate > ui mousemode right clip > ui mousemode right select > ui mousemode right translate > hide #17 models > show #17 models > select #17/F:909 #18/F:909 #19/F:909 #20/F:909 #21/F:909 #22/F:909 #23/F:909 > #24/F:909 #25/F:909 #26/F:909 #27/F:909 #28/F:909 168 atoms, 156 bonds, 12 residues, 12 models selected > select #17/F:909 #18/F:909 #19/F:909 #20/F:909 #21/F:909 #22/F:909 #23/F:909 > #24/F:909 #25/F:909 #26/F:909 #27/F:909 #28/F:909 168 atoms, 156 bonds, 12 residues, 12 models selected 13 [ID: 13] region 12 chains [905] RMSD: 0.000 > show sel atoms > select #17/F:942 #18/F:942 #19/F:942 #20/F:942 #21/F:942 #22/F:942 #23/F:942 > #24/F:942 #25/F:942 #26/F:942 #27/F:942 #28/F:942 252 atoms, 252 bonds, 12 residues, 12 models selected > select #17/F:942 #18/F:942 #19/F:942 #20/F:942 #21/F:942 #22/F:942 #23/F:942 > #24/F:942 #25/F:942 #26/F:942 #27/F:942 #28/F:942 252 atoms, 252 bonds, 12 residues, 12 models selected 13 [ID: 13] region 12 chains [938] RMSD: 0.000 > show sel atoms > select #17/F:1106 #18/F:1106 #19/F:1106 #20/F:1106 #21/F:1106 #22/F:1106 > #23/F:1106 #24/F:1106 #25/F:1106 #26/F:1106 #27/F:1106 #28/F:1106 252 atoms, 252 bonds, 12 residues, 12 models selected > select #17/F:1106 #18/F:1106 #19/F:1106 #20/F:1106 #21/F:1106 #22/F:1106 > #23/F:1106 #24/F:1106 #25/F:1106 #26/F:1106 #27/F:1106 #28/F:1106 252 atoms, 252 bonds, 12 residues, 12 models selected 13 [ID: 13] region 12 chains [1102] RMSD: 0.000 > show sel atoms > select #17/F:1110 #18/F:1110 #19/F:1110 #20/F:1110 #21/F:1110 #22/F:1110 > #23/F:1110 #24/F:1110 #25/F:1110 #26/F:1110 #27/F:1110 #28/F:1110 204 atoms, 192 bonds, 12 residues, 12 models selected > select #17/F:1110 #18/F:1110 #19/F:1110 #20/F:1110 #21/F:1110 #22/F:1110 > #23/F:1110 #24/F:1110 #25/F:1110 #26/F:1110 #27/F:1110 #28/F:1110 204 atoms, 192 bonds, 12 residues, 12 models selected 13 [ID: 13] region 12 chains [1106] RMSD: 0.000 > show sel atoms > ui mousemode right select > select clear > ui mousemode right translate > color #28 #ff85ffff > color #28 #941751ff > hide #23 models > hide #24 models > hide #25 models > hide #26 models > hide #27 models > hide #28 models > show #28 models > hide #28 models > show #28 models > hide #28 models > show #28 models > hide #28 models > show #28 models > hide #28 models > save /Users/michael/Desktop/image1.png supersample 3 > hide #17 models > hide #18 models > hide #19 models > hide #20 models > hide #21 models > hide #22 models > show #23 models > show #24 models > show #25 models > show #26 models > show #27 models > show #28 models > select #17/F:1110 #18/F:1110 #19/F:1110 #20/F:1110 #21/F:1110 #22/F:1110 > #23/F:1110 #24/F:1110 #25/F:1110 #26/F:1110 #27/F:1110 #28/F:1110 204 atoms, 192 bonds, 12 residues, 12 models selected > select #17/F:1110 #18/F:1110 #19/F:1110 #20/F:1110 #21/F:1110 #22/F:1110 > #23/F:1110 #24/F:1110 #25/F:1110 #26/F:1110 #27/F:1110 #28/F:1110 204 atoms, 192 bonds, 12 residues, 12 models selected 13 [ID: 13] region 12 chains [1106] RMSD: 0.000 > color (#23-28 & sel) light gray > select #17/F:1106-1107 #18/F:1106-1107 #19/F:1106-1107 #20/F:1106-1107 > #21/F:1106-1107 #22/F:1106-1107 #23/F:1106-1107 #24/F:1106-1107 > #25/F:1106-1107 #26/F:1106-1107 #27/F:1106-1107 #28/F:1106-1107 396 atoms, 396 bonds, 24 residues, 12 models selected > select #17/F:1106-1107 #18/F:1106-1107 #19/F:1106-1107 #20/F:1106-1107 > #21/F:1106-1107 #22/F:1106-1107 #23/F:1106-1107 #24/F:1106-1107 > #25/F:1106-1107 #26/F:1106-1107 #27/F:1106-1107 #28/F:1106-1107 396 atoms, 396 bonds, 24 residues, 12 models selected 13 [ID: 13] region 12 chains [1102-1103] RMSD: 0.000 > select #17/F:1107 #18/F:1107 #19/F:1107 #20/F:1107 #21/F:1107 #22/F:1107 > #23/F:1107 #24/F:1107 #25/F:1107 #26/F:1107 #27/F:1107 #28/F:1107 144 atoms, 132 bonds, 12 residues, 12 models selected > select #17/F:1106-1107 #18/F:1106-1107 #19/F:1106-1107 #20/F:1106-1107 > #21/F:1106-1107 #22/F:1106-1107 #23/F:1106-1107 #24/F:1106-1107 > #25/F:1106-1107 #26/F:1106-1107 #27/F:1106-1107 #28/F:1106-1107 396 atoms, 396 bonds, 24 residues, 12 models selected 13 [ID: 13] region 12 chains [1102-1103] RMSD: 0.000 > select #17/F:1106 #18/F:1106 #19/F:1106 #20/F:1106 #21/F:1106 #22/F:1106 > #23/F:1106 #24/F:1106 #25/F:1106 #26/F:1106 #27/F:1106 #28/F:1106 252 atoms, 252 bonds, 12 residues, 12 models selected > select #17/F:1106 #18/F:1106 #19/F:1106 #20/F:1106 #21/F:1106 #22/F:1106 > #23/F:1106 #24/F:1106 #25/F:1106 #26/F:1106 #27/F:1106 #28/F:1106 252 atoms, 252 bonds, 12 residues, 12 models selected 13 [ID: 13] region 12 chains [1102] RMSD: 0.000 > select #17/F:1106 #18/F:1106 #19/F:1106 #20/F:1106 #21/F:1106 #22/F:1106 > #23/F:1106 #24/F:1106 #25/F:1106 #26/F:1106 #27/F:1106 #28/F:1106 252 atoms, 252 bonds, 12 residues, 12 models selected > select #17/F:1106 #18/F:1106 #19/F:1106 #20/F:1106 #21/F:1106 #22/F:1106 > #23/F:1106 #24/F:1106 #25/F:1106 #26/F:1106 #27/F:1106 #28/F:1106 252 atoms, 252 bonds, 12 residues, 12 models selected 13 [ID: 13] region 12 chains [1102] RMSD: 0.000 > color (#23-28 & sel) light gray > select #17/F:942 #18/F:942 #19/F:942 #20/F:942 #21/F:942 #22/F:942 #23/F:942 > #24/F:942 #25/F:942 #26/F:942 #27/F:942 #28/F:942 252 atoms, 252 bonds, 12 residues, 12 models selected > select #17/F:942 #18/F:942 #19/F:942 #20/F:942 #21/F:942 #22/F:942 #23/F:942 > #24/F:942 #25/F:942 #26/F:942 #27/F:942 #28/F:942 252 atoms, 252 bonds, 12 residues, 12 models selected 13 [ID: 13] region 12 chains [938] RMSD: 0.000 > color (#23-28 & sel) light gray > select #17/F:909 #18/F:909 #19/F:909 #20/F:909 #21/F:909 #22/F:909 #23/F:909 > #24/F:909 #25/F:909 #26/F:909 #27/F:909 #28/F:909 168 atoms, 156 bonds, 12 residues, 12 models selected > select #17/F:909 #18/F:909 #19/F:909 #20/F:909 #21/F:909 #22/F:909 #23/F:909 > #24/F:909 #25/F:909 #26/F:909 #27/F:909 #28/F:909 168 atoms, 156 bonds, 12 residues, 12 models selected 13 [ID: 13] region 12 chains [905] RMSD: 0.000 > color (#23-28 & sel) light gray > ui mousemode right select > select clear > ui mousemode right translate > save /Users/michael/Desktop/image2.png supersample 3 > ui mousemode right clip > ui mousemode right select > ui mousemode right translate > ui mousemode right zoom > ui mousemode right ""crop volume"" > ui mousemode right clip > ui mousemode right translate > open ""/Users/michael/Desktop/MOE Files/88309 and 88310 Docking/Sensitized > NiV L /88309_Docked_NiV_L_APO_Sensitized.pdb"" Summary of feedback from opening /Users/michael/Desktop/MOE Files/88309 and 88310 Docking/Sensitized NiV L /88309_Docked_NiV_L_APO_Sensitized.pdb --- warnings | Ignored bad PDB record found on line 141 HELIX 1 1 PRO C 480 PHE C 484 1 Generated by MOE 5 Ignored bad PDB record found on line 142 HELIX 2 2 PRO C 490 LEU C 503 1 Generated by MOE 14 Ignored bad PDB record found on line 143 HELIX 3 3 LEU C 508 GLU C 537 1 Generated by MOE 30 Ignored bad PDB record found on line 144 HELIX 4 4 GLN C 539 LYS C 541 5 Generated by MOE 3 Ignored bad PDB record found on line 145 HELIX 5 5 ILE C 543 SER C 573 1 Generated by MOE 31 109 messages similar to the above omitted Chain information for 88309_Docked_NiV_L_APO_Sensitized.pdb #29 --- Chain | Description A | No description available B | No description available C | No description available D | No description available E | No description available > open ""/Users/michael/Desktop/MOE Files/88309 and 88310 Docking/Sensitized > NiV L /88309_Docked_NiV_L_RNA_Sensitized.pdb"" Summary of feedback from opening /Users/michael/Desktop/MOE Files/88309 and 88310 Docking/Sensitized NiV L /88309_Docked_NiV_L_RNA_Sensitized.pdb --- warnings | Ignored bad PDB record found on line 204 HELIX 1 1 PRO C 480 ASP C 483 1 Generated by MOE 4 Ignored bad PDB record found on line 205 HELIX 2 2 PRO C 490 ASP C 501 1 Generated by MOE 12 Ignored bad PDB record found on line 206 HELIX 3 3 LEU C 508 VAL C 540 1 Generated by MOE 33 Ignored bad PDB record found on line 207 HELIX 4 4 ILE C 543 VAL C 572 1 Generated by MOE 30 Ignored bad PDB record found on line 208 HELIX 5 5 PRO D 480 ASP D 483 1 Generated by MOE 4 163 messages similar to the above omitted Chain information for 88309_Docked_NiV_L_RNA_Sensitized.pdb #30 --- Chain | Description A | No description available B | No description available C | No description available D | No description available E | No description available > open ""/Users/michael/Desktop/MOE Files/88309 and 88310 Docking/Sensitized > NiV L /88310_Docked_NiV_L_APO_Sensitized.pdb"" Summary of feedback from opening /Users/michael/Desktop/MOE Files/88309 and 88310 Docking/Sensitized NiV L /88310_Docked_NiV_L_APO_Sensitized.pdb --- warnings | Ignored bad PDB record found on line 141 HELIX 1 1 PRO C 480 PHE C 484 1 Generated by MOE 5 Ignored bad PDB record found on line 142 HELIX 2 2 PRO C 490 LEU C 503 1 Generated by MOE 14 Ignored bad PDB record found on line 143 HELIX 3 3 LEU C 508 GLU C 537 1 Generated by MOE 30 Ignored bad PDB record found on line 144 HELIX 4 4 GLN C 539 LYS C 541 5 Generated by MOE 3 Ignored bad PDB record found on line 145 HELIX 5 5 ILE C 543 SER C 573 1 Generated by MOE 31 109 messages similar to the above omitted Chain information for 88310_Docked_NiV_L_APO_Sensitized.pdb #31 --- Chain | Description A | No description available B | No description available C | No description available D | No description available E | No description available > open ""/Users/michael/Desktop/MOE Files/88309 and 88310 Docking/Sensitized > NiV L /88310_Docked_NiV_L_RNA_Sensitized.pdb"" Summary of feedback from opening /Users/michael/Desktop/MOE Files/88309 and 88310 Docking/Sensitized NiV L /88310_Docked_NiV_L_RNA_Sensitized.pdb --- warnings | Ignored bad PDB record found on line 204 HELIX 1 1 PRO C 480 ASP C 483 1 Generated by MOE 4 Ignored bad PDB record found on line 205 HELIX 2 2 PRO C 490 ASP C 501 1 Generated by MOE 12 Ignored bad PDB record found on line 206 HELIX 3 3 LEU C 508 VAL C 540 1 Generated by MOE 33 Ignored bad PDB record found on line 207 HELIX 4 4 ILE C 543 VAL C 572 1 Generated by MOE 30 Ignored bad PDB record found on line 208 HELIX 5 5 PRO D 480 ASP D 483 1 Generated by MOE 4 163 messages similar to the above omitted Chain information for 88310_Docked_NiV_L_RNA_Sensitized.pdb #32 --- Chain | Description A | No description available B | No description available C | No description available D | No description available E | No description available > color #29 #ff7e79ff > color #30 #ffd479ff > color #31 #fffc79ff > color #32 #d4fb79ff > ui mousemode right clip > hide #28 models > hide #27 models > hide #26 models > hide #25 models > hide #24 models > hide #23 models > ui mousemode right translate > style #!29-32 stick Changed 139344 atom styles > show #!29-32 cartoons Computing secondary structure > ui tool show ""Show Sequence Viewer"" > sequence chain #30/E #32/E Alignment identifier is 1 > sequence chain #30/B #32/B Alignment identifier is 2 > sequence chain #30/C #32/C Alignment identifier is 3 > sequence chain #30/D #32/D Alignment identifier is 4 > select #30/C:479-496 #32/C:479-496 558 atoms, 568 bonds, 36 residues, 2 models selected > select #30/C #32/C 3226 atoms, 3252 bonds, 202 residues, 2 models selected 3 [ID: 3] region 2 chains [1-101] RMSD: 0.000 > hide sel atoms > select #30/D:480-483,490-502,508-577 #32/D:480-483,490-502,508-577 2780 atoms, 2792 bonds, 174 residues, 2 models selected > select #30/D:478-479 #32/D:478-479 76 atoms, 74 bonds, 4 residues, 2 models selected > select #30/D #32/D 3770 atoms, 3798 bonds, 236 residues, 2 models selected 4 [ID: 4] region 2 chains [1-118] RMSD: 0.000 > hide sel atoms > select #30/E:478-495 #32/E:478-495 558 atoms, 568 bonds, 36 residues, 2 models selected > select #30/E #32/E 3380 atoms, 3406 bonds, 212 residues, 2 models selected 1 [ID: 1] region 2 chains [1-106] RMSD: 0.000 > hide sel atoms > select #30/B:477 #32/B:477 46 atoms, 46 bonds, 2 residues, 2 models selected > select #30/B #32/B 6288 atoms, 6326 bonds, 4 pseudobonds, 390 residues, 4 models selected 2 [ID: 2] region 2 chains [1-195] RMSD: 0.000 > hide sel atoms > select #30/B:709 #32/B:709 40 atoms, 38 bonds, 2 residues, 2 models selected > select #30/B:709 #32/B:709 40 atoms, 38 bonds, 2 residues, 2 models selected 2 [ID: 2] region 2 chains [195] RMSD: 0.000 > ui tool show ""Show Sequence Viewer"" > sequence chain #29/A #31/A Alignment identifier is 5 > sequence chain #29/B #31/B Alignment identifier is 6 > sequence chain #29/C #31/C Alignment identifier is 7 > sequence chain #29/D #31/D Alignment identifier is 8 > sequence chain #29/E #31/E Alignment identifier is 9 > sequence chain #30/A #32/A Alignment identifier is 10 > sequence chain #30/B #32/B Alignment identifier is 11 > sequence chain #30/C #32/C Alignment identifier is 12 > sequence chain #30/D #32/D Alignment identifier is 13 > sequence chain #30/E #32/E Alignment identifier is 14 > select #30/E:480-485,490-505,508-572 #32/E:480-485,490-505,508-572 2756 atoms, 2770 bonds, 174 residues, 2 models selected > select #30/D:480-483,490-502,508-577 #32/D:480-483,490-502,508-577 2780 atoms, 2792 bonds, 174 residues, 2 models selected > select #30/C:480-483,490-502,508-573 #32/C:480-483,490-502,508-573 2640 atoms, 2652 bonds, 166 residues, 2 models selected > select #30/B:480-483,490-501,508-574,603-608,658-671,675-687,691-705 > #32/B:480-483,490-501,508-574,603-608,658-671,675-687,691-705 4222 atoms, 4228 bonds, 262 residues, 2 models selected > select #30/B:609 #32/B:609 42 atoms, 42 bonds, 2 residues, 2 models selected > select #30/B:576-609 #32/B:576-609 620 atoms, 620 bonds, 2 pseudobonds, 36 residues, 4 models selected 11 [ID: 11] region 2 chains [100-117] RMSD: 0.000 > select #29/C:480-484,490-505,508-537,539-573 > #31/C:480-484,490-505,508-537,539-573 2726 atoms, 2738 bonds, 172 residues, 2 models selected > select #29/D:480-485,490-505,508-577 #31/D:480-485,490-505,508-577 2918 atoms, 2932 bonds, 184 residues, 2 models selected > select #29/E:480-483,490-503,508-573 #31/E:480-483,490-503,508-573 2678 atoms, 2690 bonds, 168 residues, 2 models selected > select #29/B:480-487,490-503,508-526,529-571,658-671,675-687,691-705 > #31/B:480-487,490-503,508-526,529-571,658-671,675-687,691-705 4062 atoms, 4072 bonds, 252 residues, 2 models selected > select #29/B:475 #31/B:475 28 atoms, 26 bonds, 2 residues, 2 models selected > select #29/B #31/B 6286 atoms, 6324 bonds, 4 pseudobonds, 392 residues, 4 models selected 6 [ID: 6] region 2 chains [1-196] RMSD: 0.000 > hide sel atoms > select #29/C:476 #31/C:476 48 atoms, 46 bonds, 2 residues, 2 models selected > select #29/C #31/C 3364 atoms, 3392 bonds, 210 residues, 2 models selected 7 [ID: 7] region 2 chains [1-105] RMSD: 0.000 > hide sel atoms > select #29/D:478 #31/D:478 42 atoms, 40 bonds, 2 residues, 2 models selected > select #29/D #31/D 3278 atoms, 3304 bonds, 206 residues, 2 models selected 8 [ID: 8] region 2 chains [1-103] RMSD: 0.000 > hide sel atoms > select #29/E:478-497 #31/E:478-497 624 atoms, 634 bonds, 40 residues, 2 models selected > select #29/E #31/E 3322 atoms, 3348 bonds, 208 residues, 2 models selected 9 [ID: 9] region 2 chains [1-104] RMSD: 0.000 > hide sel atoms > select > #30/A:23-32,44-55,61-76,80-82,90-93,101-136,141-155,157-162,167-188,190-193,232-254,259-301,310-325,331-345,350-361,370-381,389-408,426-432,440-445,448-450,480-486,505-509,517-525,561-572,575-578,588-602,726-729,732-745,754-759,803-821,848-873,905-907,909-911,923-939,944-964,973-980,983-991,994-996,1004-1007,1015-1028,1034-1041,1050-1055,1068-1080,1096-1109,1116-1125,1127-1134,1165-1178,1192-1203,1205-1208,1221-1224,1239-1241,1292-1307,1312-1324,1330-1336,1392-1406,1483-1485,1488-1511,1516-1518,1531-1536,1539-1553,1555-1561,1565-1578,1582-1592,1595-1603,1620-1640,1654-1676,1690-1707,1728-1742,1780-1785,1805-1809,1819-1832,1848-1856,1884-1890,1896-1899,1911-1913,1919-1928,1949-1966,1985-1995,2029-2035,2044-2070,2084-2091,2098-2106,2114-2132,2151-2171,2178-2189,2199-2204,2207-2216,2228-2243 > #32/A:23-32,44-55,61-76,80-82,90-93,101-136,141-155,157-162,167-188,190-193,232-254,259-301,310-325,331-345,350-361,370-381,389-408,426-432,440-445,448-450,480-486,505-509,517-525,561-572,575-578,588-602,726-729,732-745,754-759,803-821,848-873,905-907,909-911,923-939,944-964,973-980,983-991,994-996,1004-1007,1015-1028,1034-1041,1050-1055,1068-1080,1096-1109,1116-1125,1127-1134,1165-1178,1192-1203,1205-1208,1221-1224,1239-1241,1292-1307,1312-1324,1330-1336,1392-1406,1483-1485,1488-1511,1516-1518,1531-1536,1539-1553,1555-1561,1565-1578,1582-1592,1595-1603,1620-1640,1654-1676,1690-1707,1728-1742,1780-1785,1805-1809,1819-1832,1848-1856,1884-1890,1896-1899,1911-1913,1919-1928,1949-1966,1985-1995,2029-2035,2044-2070,2084-2091,2098-2106,2114-2132,2151-2171,2178-2189,2199-2204,2207-2216,2228-2243 34312 atoms, 34446 bonds, 2052 residues, 2 models selected > select #29/A:5 #31/A:5 42 atoms, 40 bonds, 2 residues, 2 models selected > select #29/A:5-1451 #31/A:5-1451 39956 atoms, 40368 bonds, 12 pseudobonds, 2466 residues, 4 models selected 5 [ID: 5] region 2 chains [1-1233] RMSD: 0.000 > hide sel atoms > select #30/A:6-130 #32/A:6-130 4122 atoms, 4154 bonds, 250 residues, 2 models selected > select #30/A:6-2244 #32/A:6-2244 65574 atoms, 66248 bonds, 18 pseudobonds, 4040 residues, 4 models selected 10 [ID: 10] region 2 chains [1-2020] RMSD: 0.000 > hide sel atoms > select #29/A:1451 #31/A:1451 34 atoms, 32 bonds, 2 residues, 2 models selected > select #29/A:1419-1451 #31/A:1419-1451 872 atoms, 880 bonds, 2 pseudobonds, 54 residues, 4 models selected 5 [ID: 5] region 2 chains [1207-1233] RMSD: 0.000 > select #29/A:1451 #31/A:1451 34 atoms, 32 bonds, 2 residues, 2 models selected > select #29/A:1451 #31/A:1451 34 atoms, 32 bonds, 2 residues, 2 models selected 5 [ID: 5] region 2 chains [1233] RMSD: 0.000 > hide #!29 models > hide #!31 models > ui mousemode right select > select #32/?:0@@serial_number=41526 1 atom, 1 residue, 1 model selected > open ""/Users/michael/Desktop/MOE Files/88309 and 88310 Docking/NIV L > Elongation 88309 Bound Triangle Matcher.pdb"" Summary of feedback from opening /Users/michael/Desktop/MOE Files/88309 and 88310 Docking/NIV L Elongation 88309 Bound Triangle Matcher.pdb --- warnings | Ignored bad PDB record found on line 204 HELIX 1 1 PRO C 480 PHE C 484 1 Generated by MOE 5 Ignored bad PDB record found on line 205 HELIX 2 2 PRO C 490 LEU C 503 1 Generated by MOE 14 Ignored bad PDB record found on line 206 HELIX 3 3 LEU C 508 VAL C 540 1 Generated by MOE 33 Ignored bad PDB record found on line 207 HELIX 4 4 ILE C 543 SER C 573 1 Generated by MOE 31 Ignored bad PDB record found on line 208 HELIX 5 5 PRO D 480 PHE D 484 1 Generated by MOE 5 169 messages similar to the above omitted Chain information for NIV L Elongation 88309 Bound Triangle Matcher.pdb #33 --- Chain | Description A | No description available B | No description available C | No description available D | No description available E | No description available G | No description available > open ""/Users/michael/Desktop/MOE Files/88309 and 88310 Docking/NIV L > Elongation 88310 Bound Triangle Matcher.pdb"" Summary of feedback from opening /Users/michael/Desktop/MOE Files/88309 and 88310 Docking/NIV L Elongation 88310 Bound Triangle Matcher.pdb --- warnings | Ignored bad PDB record found on line 204 HELIX 1 1 PRO C 480 PHE C 484 1 Generated by MOE 5 Ignored bad PDB record found on line 205 HELIX 2 2 PRO C 490 LEU C 503 1 Generated by MOE 14 Ignored bad PDB record found on line 206 HELIX 3 3 LEU C 508 VAL C 540 1 Generated by MOE 33 Ignored bad PDB record found on line 207 HELIX 4 4 ILE C 543 SER C 573 1 Generated by MOE 31 Ignored bad PDB record found on line 208 HELIX 5 5 PRO D 480 PHE D 484 1 Generated by MOE 5 169 messages similar to the above omitted Chain information for NIV L Elongation 88310 Bound Triangle Matcher.pdb #34 --- Chain | Description A | No description available B | No description available C | No description available D | No description available E | No description available G | No description available > show #!31 models > hide #!31 models > show #!31 models > hide #!31 models > style sel stick Changed 0 atom styles > show sel cartoons > style sel stick Changed 0 atom styles > style sel stick Changed 0 atom styles > style sel stick Changed 0 atom styles > style sel stick Changed 0 atom styles Drag select of 83856 atoms, 5080 residues, 30 pseudobonds, 928 bonds > style sel stick Changed 166094 atom styles > show sel cartoons Computing secondary structure > select clear > color #33 #73fa79ff > color #34 #73fcd6ff > select clear > select #33/A:2179@OE2 1 atom, 1 residue, 1 model selected > select clear Drag select of 17702 atoms, 3380 residues, 8 pseudobonds, 16472 bonds > select clear > select #30/D:554 12 atoms, 11 bonds, 1 residue, 1 model selected > select clear > ui tool show ""Show Sequence Viewer"" > sequence chain #33/A #34/A Alignment identifier is 11 > select #33/A:6 #34/A:6 24 atoms, 22 bonds, 2 residues, 2 models selected > select #33/A:6-2244 #34/A:6-2244 65548 atoms, 66222 bonds, 18 pseudobonds, 4040 residues, 4 models selected 11 [ID: 11] region 2 chains [1-2020] RMSD: 0.000 > hide sel atoms > select clear > hide #!32 models > hide #!30 models > hide #!34 models > show #!34 models > hide #!33 models > show #!33 models > select #33/A:6-72 #34/A:6-72 2188 atoms, 2206 bonds, 134 residues, 2 models selected > select #33/A:6-2244 #34/A:6-2244 65548 atoms, 66222 bonds, 18 pseudobonds, 4040 residues, 4 models selected 11 [ID: 11] region 2 chains [1-2020] RMSD: 0.000 > hide sel cartoons Drag select of 1510 atoms, 140 residues, 1390 bonds > hide sel atoms > hide sel cartoons Drag select of 4866 atoms, 470 residues, 2 pseudobonds, 4514 bonds > hide sel atoms > hide sel cartoons Drag select of 3284 atoms, 332 residues, 3034 bonds > hide sel cartoons > hide sel atoms Drag select of 794 atoms, 68 residues, 736 bonds > hide sel cartoons > hide sel atoms > show #!32 models > hide #!33 models > ui mousemode right translate > surface (#!34 & sel) > ui mousemode right select > select clear > surface #32,34 > hide #!32 models > hide #!34 models > show #!5 models > ui mousemode right translate > show #!5 surfaces > lighting simple > lighting soft > lighting full > lighting flat > lighting shadows true intensity 0.5 > lighting soft > lighting simple > lighting soft > lighting simple > lighting soft > lighting full > lighting simple > lighting full > ui mousemode right select ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.11.1 (2026-01-23) © 2016-2025 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 ATI-6.1.13 OpenGL renderer: AMD Radeon Pro 5300 OpenGL Engine OpenGL vendor: ATI Technologies Inc. Python: 3.11.9 Locale: UTF-8 Qt version: PyQt6 6.9.1, Qt 6.9.0 Qt runtime version: 6.9.2 Qt platform: cocoa Hardware: Hardware Overview: Model Name: iMac Model Identifier: iMac20,1 Processor Name: 6-Core Intel Core i5 Processor Speed: 3.3 GHz Number of Processors: 1 Total Number of Cores: 6 L2 Cache (per Core): 256 KB L3 Cache: 12 MB Hyper-Threading Technology: Enabled Memory: 16 GB System Firmware Version: 2069.0.0.0.0 (iBridge: 22.16.10353.0.0,0) OS Loader Version: 582~1023 Software: System Software Overview: System Version: macOS 15.0 (24A335) Kernel Version: Darwin 24.0.0 Time since boot: 5 days, 23 hours, 55 minutes Graphics/Displays: AMD Radeon Pro 5300: Chipset Model: AMD Radeon Pro 5300 Type: GPU Bus: PCIe PCIe Lane Width: x16 VRAM (Total): 4 GB Vendor: AMD (0x1002) Device ID: 0x7340 Revision ID: 0x0047 ROM Revision: 113-D3220I-231 VBIOS Version: 113-D322A1XL-011 Option ROM Version: 113-D322A1XL-011 EFI Driver Version: 01.01.231 Metal Support: Metal 3 Displays: iMac: Display Type: Built-In Retina LCD Resolution: Retina 5K (5120 x 2880) Framebuffer Depth: 30-Bit Color (ARGB2101010) Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: No Connection Type: Internal LEN D24f-10: Resolution: 1920 x 1080 (1080p FHD - Full High Definition) UI Looks like: 1920 x 1080 @ 60.00Hz Framebuffer Depth: 30-Bit Color (ARGB2101010) Mirror: Off Online: Yes Rotation: Supported Adapter Type: DVI or HDMI Adapter Firmware Version: ff.c1 Installed Packages: aiohappyeyeballs: 2.6.1 aiohttp: 3.13.1 aiosignal: 1.4.0 alabaster: 1.0.0 annotated-types: 0.7.0 anyio: 4.12.1 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 3.0.1 attrs: 25.4.0 babel: 2.17.0 beautifulsoup4: 4.13.5 blockdiag: 3.0.0 blosc2: 3.12.2 build: 1.3.0 certifi: 2025.7.14 cftime: 1.6.5 charset-normalizer: 3.4.4 ChimeraX-AddCharge: 1.5.20 ChimeraX-AddH: 2.2.8 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.6.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 3.1.1 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Animations: 1.0 ChimeraX-Aniso: 1.3.2 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.61.4 ChimeraX-AtomicLibrary: 14.2.1 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.3 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-Boltz: 1.1 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.2 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.6.0 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.5 ChimeraX-ChemGroup: 2.0.2 ChimeraX-Clashes: 2.3 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.8 ChimeraX-CommandLine: 1.3.0 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.11.1 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.5 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.4 ChimeraX-Dicom: 1.2.7 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.4 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5.3 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.4 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.7.3 ChimeraX-Label: 1.2 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.2.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.2 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.2.2 ChimeraX-MCopy: 1.0 ChimeraX-MCPServer: 0.1.0 ChimeraX-MDcrds: 2.17.2 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-Minimize: 1.3.2 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.16 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.22 ChimeraX-ModelPanel: 1.6 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0.1 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.15.2 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.12 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.5 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.4 ChimeraX-ProfileGrids: 1.4.2 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.6.5 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.3 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.2 ChimeraX-Scenes: 0.3.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.3 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.10 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.17.3 ChimeraX-Shape: 1.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.1 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.19.1 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5.2 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.3 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.49.1 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.2 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDock: 1.5.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.5 ChimeraX-Zone: 1.0.1 click: 8.3.1 colorama: 0.4.6 comm: 0.2.3 contourpy: 1.3.3 coverage: 7.13.1 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.1.4 debugpy: 1.8.19 decorator: 5.2.1 docutils: 0.21.2 executing: 2.2.1 filelock: 3.19.1 fonttools: 4.61.1 frozenlist: 1.8.0 funcparserlib: 2.0.0a0 glfw: 2.10.0 grako: 3.16.5 h11: 0.16.0 h5py: 3.15.1 html2text: 2025.4.15 httpcore: 1.0.9 httpx: 0.28.1 httpx-sse: 0.4.3 idna: 3.11 ihm: 2.2 imagecodecs: 2024.6.1 imagesize: 1.4.1 iniconfig: 2.3.0 ipykernel: 6.30.1 ipython: 9.5.0 ipython_pygments_lexers: 1.1.1 ipywidgets: 8.1.8 jedi: 0.19.2 Jinja2: 3.1.6 jsonschema: 4.26.0 jsonschema-specifications: 2025.9.1 jupyter_client: 8.6.3 jupyter_core: 5.9.1 jupyterlab_widgets: 3.0.16 kiwisolver: 1.4.9 line_profiler: 5.0.0 lxml: 6.0.2 lz4: 4.3.2 Markdown: 3.8.2 MarkupSafe: 3.0.3 matplotlib: 3.10.7 matplotlib-inline: 0.2.1 mcp: 1.18.0 msgpack: 1.1.1 multidict: 6.7.0 narwhals: 2.17.0 ndindex: 1.10.1 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.14.1 numpy: 2.4.2 numpy: 1.26.4 OpenMM: 8.2.0 openvr: 1.26.701 packaging: 25.0 ParmEd: 4.2.2 parso: 0.8.5 pep517: 0.13.1 pexpect: 4.9.0 pickleshare: 0.7.5 pillow: 11.3.0 pip: 25.2 pkginfo: 1.12.1.2 platformdirs: 4.5.1 plotly: 6.5.2 pluggy: 1.6.0 prompt_toolkit: 3.0.52 propcache: 0.4.1 psutil: 7.0.0 ptyprocess: 0.7.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pybind11: 3.0.1 pycollada: 0.8 pydantic: 2.12.5 pydantic-settings: 2.12.0 pydantic_core: 2.41.5 pydicom: 2.4.4 Pygments: 2.18.0 pyKVFinder: 0.9.0 pynmrstar: 3.3.6 pynrrd: 1.0.0 PyOpenGL: 3.1.10 PyOpenGL-accelerate: 3.1.10 pyopenxr: 1.1.4501 pyparsing: 3.3.2 pyproject_hooks: 1.2.0 PyQt6-commercial: 6.9.1 PyQt6-Qt6: 6.9.2 PyQt6-WebEngine-commercial: 6.9.0 PyQt6-WebEngine-Qt6: 6.9.2 PyQt6_sip: 13.10.2 pytest: 9.0.2 pytest-cov: 7.0.0 python-dateutil: 2.9.0.post0 python-dotenv: 1.2.1 python-multipart: 0.0.21 pyzmq: 27.1.0 qtconsole: 5.7.0 QtPy: 2.4.3 qtshim: 1.2 RandomWords: 0.4.0 referencing: 0.37.0 requests: 2.32.5 roman-numerals: 4.1.0 roman-numerals-py: 4.1.0 rpds-py: 0.30.0 scipy: 1.14.0 setuptools: 80.9.0 sfftk-rw: 0.8.1 six: 1.17.0 snowballstemmer: 3.0.1 sortedcontainers: 2.4.0 soupsieve: 2.8.3 Sphinx: 8.2.3 sphinx-autodoc-typehints: 3.2.0 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 sse-starlette: 3.2.0 stack-data: 0.6.3 starlette: 0.52.1 superqt: 0.7.6 tables: 3.10.2 tcia_utils: 1.5.1 tifffile: 2025.3.13 tinyarray: 1.2.5 tomlkit: 0.14.0 tornado: 6.5.4 traitlets: 5.14.3 typing-inspection: 0.4.2 typing_extensions: 4.15.0 urllib3: 2.6.3 uvicorn: 0.40.0 wcwidth: 0.3.2 webcolors: 24.11.1 wheel: 0.45.1 wheel-filename: 1.4.2 widgetsnbextension: 4.0.15 yarl: 1.22.0 }}} " defect closed normal Window Toolkit duplicate all ChimeraX