id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 20297 Cannot save movie frames chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-15.5-arm64-arm-64bit ChimeraX Version: 1.12rc202605052234 (2026-05-05 22:34:16 UTC) Description Replace this text with list of actions that caused this problem to occur Log: UCSF ChimeraX version: 1.12rc202605052234 (2026-05-05) © 2016-2026 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Users/yankaituo/work/SAP11-TCP正交系统突变设计/TCP_SAP11_swapped.pdb Chain information for TCP_SAP11_swapped.pdb #1 --- Chain | Description A | No description available B | No description available Computing secondary structure > ui tool show Toolbar > ui dockable true Toolbar > ui tool show ""Model Panel"" You can double click a model's Name or ID in the model panel to edit those fields > hide #1 models > show #1 models > open > /Users/yankaituo/work/SAP11-TCP正交系统突变设计/mutation_TCP_mutation_SAP11/collected_models/mutation_tcp_mutation_sap11_19_fold_mutation_tcp_mutation_sap11_19_model_0.cif Chain information for mutation_tcp_mutation_sap11_19_fold_mutation_tcp_mutation_sap11_19_model_0.cif #2 --- Chain | Description A | . B | . Computing secondary structure > ui mousemode right ""translate selected models"" [Repeated 1 time(s)] > ui mousemode right ""rotate selected models"" > hide #1 models > show #1 models > hide #1 models > select add #2 765 atoms, 772 bonds, 91 residues, 1 model selected > view matrix models > #2,0.31272,0.025361,-0.94951,-7.6866,0.15695,0.98452,0.077988,1.5206,0.93679,-0.17341,0.3039,7.1129 > show #1 models > ui mousemode right ""translate selected models"" > view matrix models > #2,0.31272,0.025361,-0.94951,-2.6537,0.15695,0.98452,0.077988,20.954,0.93679,-0.17341,0.3039,9.557 > view matrix models > #2,0.31272,0.025361,-0.94951,5.0693,0.15695,0.98452,0.077988,0.1838,0.93679,-0.17341,0.3039,27.622 > view matrix models > #2,0.31272,0.025361,-0.94951,33.175,0.15695,0.98452,0.077988,-8.0547,0.93679,-0.17341,0.3039,33.062 > ui mousemode right ""rotate selected models"" [Repeated 1 time(s)] > select subtract #2 Nothing selected > select add #2 765 atoms, 772 bonds, 91 residues, 1 model selected > select subtract #2 Nothing selected > select add #2 765 atoms, 772 bonds, 91 residues, 1 model selected > select subtract #2 Nothing selected > select add #2 765 atoms, 772 bonds, 91 residues, 1 model selected > view matrix models > #2,0.54519,0.60123,-0.5842,36.155,-0.57566,0.77509,0.26046,-14.397,0.60941,0.1943,0.76868,31.103 > view matrix models > #2,0.73599,0.53174,-0.41901,38.093,-0.18845,0.75538,0.6276,-10.347,0.65023,-0.38294,0.65616,30.978 > view matrix models > #2,-0.16094,-0.43938,0.88376,31.739,0.77191,0.50195,0.39013,-2.3071,-0.61503,0.74497,0.25838,19.628 > view matrix models > #2,-0.11241,-0.65586,0.74646,31.831,0.9917,-0.12122,0.042831,-1.248,0.062397,0.74508,0.66404,26.341 > view matrix models > #2,-0.080947,-0.65042,0.75525,32.129,0.99569,-0.018332,0.09093,-1.0789,-0.045298,0.75935,0.6491,25.363 > view matrix models > #2,-0.076371,-0.6296,0.77316,32.21,0.99598,-0.011714,0.088842,-1.0764,-0.046878,0.77683,0.62796,25.323 > ui mousemode right ""translate selected models"" > view matrix models > #2,-0.076371,-0.6296,0.77316,63.143,0.99598,-0.011714,0.088842,-5.5422,-0.046878,0.77683,0.62796,21.559 > view matrix models > #2,-0.076371,-0.6296,0.77316,63.81,0.99598,-0.011714,0.088842,-8.3468,-0.046878,0.77683,0.62796,23.026 > view matrix models > #2,-0.076371,-0.6296,0.77316,69.498,0.99598,-0.011714,0.088842,-0.75829,-0.046878,0.77683,0.62796,18.26 > view matrix models > #2,-0.076371,-0.6296,0.77316,65.931,0.99598,-0.011714,0.088842,2.6826,-0.046878,0.77683,0.62796,19.73 > view matrix models > #2,-0.076371,-0.6296,0.77316,67.229,0.99598,-0.011714,0.088842,7.0706,-0.046878,0.77683,0.62796,19.173 > ui mousemode right ""rotate selected models"" > view matrix models > #2,-0.19761,-0.97178,0.12886,64.902,0.92492,-0.14128,0.35294,6.8056,-0.32477,0.18893,0.92673,16.88 > view matrix models > #2,-0.062204,-0.66301,-0.74602,64.825,0.79198,-0.48766,0.36736,5.4621,-0.60737,-0.56798,0.55543,13.349 > view matrix models > #2,0.43154,0.66181,-0.613,70.144,0.75933,-0.63336,-0.14924,4.2402,-0.48702,-0.40107,-0.77586,12.308 > view matrix models > #2,0.47085,0.79919,-0.37363,70.962,0.78373,-0.57337,-0.23878,4.3411,-0.40506,-0.18039,-0.89632,12.956 > view matrix models > #2,0.14948,0.54199,-0.82698,67.212,0.83288,-0.51978,-0.19011,4.8881,-0.53289,-0.66036,-0.52911,12.171 > view matrix models > #2,0.36015,0.56983,-0.73864,69.251,0.85678,-0.51529,0.020233,5.4515,-0.36908,-0.64013,-0.6738,13.404 > ui mousemode right ""translate selected models"" > view matrix models > #2,0.36015,0.56983,-0.73864,64.509,0.85678,-0.51529,0.020233,13.71,-0.36908,-0.64013,-0.6738,32.057 > ui mousemode right ""rotate selected models"" > view matrix models > #2,0.4645,0.54974,-0.69428,65.503,0.81599,-0.57032,0.094334,13.44,-0.3441,-0.61034,-0.7135,32.23 > view matrix models > #2,0.081181,-0.38708,-0.91847,61.222,0.94425,-0.26514,0.1952,14.911,-0.31907,-0.88311,0.34397,34.059 > ui mousemode right ""translate selected models"" > view matrix models > #2,0.081181,-0.38708,-0.91847,62.976,0.94425,-0.26514,0.1952,14.047,-0.31907,-0.88311,0.34397,29.305 > view matrix models > #2,0.081181,-0.38708,-0.91847,70.318,0.94425,-0.26514,0.1952,7.5072,-0.31907,-0.88311,0.34397,29.879 > view matrix models > #2,0.081181,-0.38708,-0.91847,69.454,0.94425,-0.26514,0.1952,6.238,-0.31907,-0.88311,0.34397,30.139 > view matrix models > #2,0.081181,-0.38708,-0.91847,66.922,0.94425,-0.26514,0.1952,3.1705,-0.31907,-0.88311,0.34397,31.167 > view matrix models > #2,0.081181,-0.38708,-0.91847,71.62,0.94425,-0.26514,0.1952,6.4024,-0.31907,-0.88311,0.34397,33.884 > view matrix models > #2,0.081181,-0.38708,-0.91847,69.928,0.94425,-0.26514,0.1952,7.0873,-0.31907,-0.88311,0.34397,34.646 > view matrix models > #2,0.081181,-0.38708,-0.91847,70.661,0.94425,-0.26514,0.1952,8.3806,-0.31907,-0.88311,0.34397,34.877 > view matrix models > #2,0.081181,-0.38708,-0.91847,46.762,0.94425,-0.26514,0.1952,8.3698,-0.31907,-0.88311,0.34397,55.136 > view matrix models > #2,0.081181,-0.38708,-0.91847,42.383,0.94425,-0.26514,0.1952,9.58,-0.31907,-0.88311,0.34397,59.118 > view matrix models > #2,0.081181,-0.38708,-0.91847,40.923,0.94425,-0.26514,0.1952,9.3208,-0.31907,-0.88311,0.34397,57.242 > set bgColor white > preset silhouettes Using preset: Overall Look / Publication 1 (Silhouettes) Preset expands to these ChimeraX commands: set bg white graphics silhouettes t lighting depthCue f > color bychain > view matrix models > #2,0.081181,-0.38708,-0.91847,38.383,0.94425,-0.26514,0.1952,9.7816,-0.31907,-0.88311,0.34397,59.51 > view matrix models > #2,0.081181,-0.38708,-0.91847,40.216,0.94425,-0.26514,0.1952,11.273,-0.31907,-0.88311,0.34397,59.386 > select subtract #2 Nothing selected > preset publication Multiple preset names match 'publication': publication 1 (silhouettes); publication 2 (depth-cued) > preset publication1 No preset name matches 'publication1' > preset publication 1 Using preset: Overall Look / Publication 1 (Silhouettes) Preset expands to these ChimeraX commands: set bg white graphics silhouettes t lighting depthCue f > select #1,2 1541 atoms, 1559 bonds, 182 residues, 2 models selected > cofr sel > ~select Nothing selected > graphics shadows true Expected a keyword > lighting shadows true > movie record directory /Users/yankaituo/Desktop/my_movie Directory /Users/yankaituo/Desktop/my_movie does not exist > mkdir ~/Desktop/my_movie Unknown command: mkdir ~/Desktop/my_movie > movie record directory /Users/yankaituo/Desktop/my_movie > roll y 1 360 > roll y 1 360 center individual Invalid ""center"" argument: Expected 3 floats or object specifier > select add #2 765 atoms, 772 bonds, 91 residues, 1 model selected > view matrix models > #2,0.081181,-0.38708,-0.91847,40.211,0.94425,-0.26514,0.1952,12.005,-0.31907,-0.88311,0.34397,59.376 > select subtract #2 Nothing selected > select add #1 776 atoms, 787 bonds, 91 residues, 1 model selected > view matrix models #1,1,0,0,-0.38656,0,1,0,-3.65,0,0,1,0.49805 > view matrix models #1,1,0,0,-0.35283,0,1,0,-3.5804,0,0,1,0.47065 > ui mousemode right ""rotate selected models"" > view matrix models > #1,0.99624,0.018654,0.084626,-3.2299,-0.016663,0.99957,-0.024175,-1.4755,-0.08504,0.022674,0.99612,6.7665 > view matrix models > #1,0.98739,0.035313,0.15429,-5.1839,-0.0288,0.99861,-0.044244,0.14863,-0.15564,0.039243,0.98703,12.207 > select subtract #1 Nothing selected > select add #1 776 atoms, 787 bonds, 91 residues, 1 model selected > select subtract #1 Nothing selected > select add #2 765 atoms, 772 bonds, 91 residues, 1 model selected > view matrix models > #2,0.06309,-0.45618,-0.88765,40.064,0.9414,-0.26807,0.20468,11.994,-0.33133,-0.84855,0.41254,59.398 > view matrix models > #2,0.048858,-0.49995,-0.86468,39.952,0.94158,-0.26577,0.20687,12,-0.33323,-0.82427,0.45776,59.469 > view matrix models > #2,0.0081655,-0.47197,-0.88158,39.576,0.92411,-0.33326,0.18698,11.776,-0.38204,-0.8162,0.43343,58.997 > view matrix models > #2,0.074977,-0.44372,-0.89302,40.168,0.92087,-0.31278,0.23273,11.833,-0.38259,-0.83981,0.38516,58.9 > select subtract #2 Nothing selected > roll y 1 360 center #1,2 > turn y 1 360 center #1 models #1 > turn y 1 360 center #2 models #2 > turn y 1 360 center #1 models #1 > turn y 1 360 center #2 models #2 > wait 360 > turn y 1 360 center #1 models #1 > turn y 1 360 center #2 models #2 wait 360 Expected a keyword > select add #2 765 atoms, 772 bonds, 91 residues, 1 model selected > select subtract #2 Nothing selected > select add #2 765 atoms, 772 bonds, 91 residues, 1 model selected > select subtract #2 Nothing selected > turn y 1 360 center #1 models #1 > turn y 1 360 center #2 models #2 wait Expected a keyword > turn y 1 360 center #1 models #1 > turn y 1 360 center #2 models #2 > wait 360 > movie encode output /Users/yankaituo/Desktop/SAP11_TCP_SelfSpin.mp4 quality > high Movie encoding failed because no images were recorded. > view #1, 2 > movie record directory /Users/yankaituo/Desktop/SAP11_TCP_Movie Directory /Users/yankaituo/Desktop/SAP11_TCP_Movie does not exist > movie record directory /Users/yankaituo/Desktop/SAP11_TCP_Movie > turn y 1 360 center #1 models #1 > turn y 1 360 center #2 models #2 Traceback (most recent call last): File ""/Applications/ChimeraX-1.12-rc2026.05.06.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/core/triggerset.py"", line 149, in invoke return self._func(self._name, data) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""/Applications/ChimeraX-1.12-rc2026.05.06.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/movie/movie.py"", line 177, in capture_image i.save(save_path, self.img_fmt) File ""/Applications/ChimeraX-1.12-rc2026.05.06.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/PIL/Image.py"", line 2583, in save fp = builtins.open(filename, ""w+b"") ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ FileNotFoundError: [Errno 2] No such file or directory: '/Users/yankaituo/Desktop/my_movie/chimovie_Mtx7-04109.ppm' Error processing trigger ""frame drawn"": FileNotFoundError: [Errno 2] No such file or directory: '/Users/yankaituo/Desktop/my_movie/chimovie_Mtx7-04109.ppm' File ""/Applications/ChimeraX-1.12-rc2026.05.06.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/PIL/Image.py"", line 2583, in save fp = builtins.open(filename, ""w+b"") ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ See log for complete Python traceback. > turn y 1 360 center #1 models #1 > turn y 1 360 center #2 models #2 > turn y 1 360 center #1 models #1 > turn y 1 360 center #2 models #2 > wait 3602 > wait 360 > movie encode output > /Users/yankaituo/Desktop/SAP11_TCP_Individual_Rotation.mp4 quality high Movie encoding failed because no images were recorded. > turn y 1 360 center #1 models #1 > turn y 1 360 center #2 models #2 > wait 3602 > wait 360 > movie encode output /Users/yankaituo/Desktop/SAP11_TCP_Final.mp4 quality > high Movie encoding failed because no images were recorded. > movie record > turn y 2 180 > wait 180 Traceback (most recent call last): File ""/Applications/ChimeraX-1.12-rc2026.05.06.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/core/triggerset.py"", line 149, in invoke return self._func(self._name, data) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""/Applications/ChimeraX-1.12-rc2026.05.06.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/movie/movie.py"", line 177, in capture_image i.save(save_path, self.img_fmt) File ""/Applications/ChimeraX-1.12-rc2026.05.06.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/PIL/Image.py"", line 2583, in save fp = builtins.open(filename, ""w+b"") ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ FileNotFoundError: [Errno 2] No such file or directory: '/Users/yankaituo/Desktop/my_movie/chimovie_Mtx7-04110.ppm' Error processing trigger ""frame drawn"": FileNotFoundError: [Errno 2] No such file or directory: '/Users/yankaituo/Desktop/my_movie/chimovie_Mtx7-04110.ppm' File ""/Applications/ChimeraX-1.12-rc2026.05.06.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/PIL/Image.py"", line 2583, in save fp = builtins.open(filename, ""w+b"") ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ See log for complete Python traceback. > movie encode /Users/yankaituo/Desktop/protein_spin_3s.mp4 framerate 60 > quality high Movie encoding failed because no images were recorded. > movie record > turn #1 y 2 180 center #1 ; turn #2 y 2 180 center #2 ; wait 180 ; movie > encode ~/Desktop/independent_spin_3s.mp4 framerate 60 quality high Expected an axis vector or a keyword > cofr models #1 #2 Expected 3-tuple of numbers or a keyword > cofr model #1 #2 Expected 3-tuple of numbers or a keyword > movie record Already recording a movie > movie stop > movie abort Not currently encoding > movie record > turn #1 0,1,0 2 180 center #1 ; turn #2 0,1,0 2 180 center #2 ; wait 180 ; > movie encode ~/Desktop/independent_spin_3s.mp4 framerate 60 quality high Expected an axis vector or a keyword > movie record Already recording a movie > movie record Already recording a movie > movie stop [Repeated 1 time(s)]Not currently recording > movie record > turn #1 0,1,0 2 180 center #1 ; turn #2 0,1,0 2 180 center #2 ; wait 180 ; > movie encode ~/Desktop/independent_spin_3s.mp4 framerate 60 quality high Expected an axis vector or a keyword > movie record Already recording a movie > movie stop > movie record > roll #1 y 2 180 center #1 ; roll #2 y 2 180 center #2 ; wait 180 ; movie > encode ~/Desktop/independent_spin_3s.mp4 framerate 60 quality high Expected an axis vector or a keyword > movie record Already recording a movie > movie stop > movie record > roll #1 y 2 180 center #1 ; roll #2 y 2 180 center #2 ; wait 180 ; movie > encode ~/Desktop/independent_spin_3s.mp4 framerate 60 quality high Expected an axis vector or a keyword Traceback (most recent call last): File ""/Applications/ChimeraX-1.12-rc2026.05.06.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/core/triggerset.py"", line 149, in invoke return self._func(self._name, data) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""/Applications/ChimeraX-1.12-rc2026.05.06.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/movie/movie.py"", line 177, in capture_image i.save(save_path, self.img_fmt) File ""/Applications/ChimeraX-1.12-rc2026.05.06.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/PIL/Image.py"", line 2583, in save fp = builtins.open(filename, ""w+b"") ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ FileNotFoundError: [Errno 2] No such file or directory: '/Users/yankaituo/Desktop/my_movie/chimovie_Mtx7-04111.ppm' Error processing trigger ""frame drawn"": FileNotFoundError: [Errno 2] No such file or directory: '/Users/yankaituo/Desktop/my_movie/chimovie_Mtx7-04111.ppm' File ""/Applications/ChimeraX-1.12-rc2026.05.06.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/PIL/Image.py"", line 2583, in save fp = builtins.open(filename, ""w+b"") ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ See log for complete Python traceback. > hide #2 models > movie record Already recording a movie > movie stop > movie record > turn y 2 180 > wait 180 Traceback (most recent call last): File ""/Applications/ChimeraX-1.12-rc2026.05.06.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/core/triggerset.py"", line 149, in invoke return self._func(self._name, data) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""/Applications/ChimeraX-1.12-rc2026.05.06.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/movie/movie.py"", line 177, in capture_image i.save(save_path, self.img_fmt) File ""/Applications/ChimeraX-1.12-rc2026.05.06.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/PIL/Image.py"", line 2583, in save fp = builtins.open(filename, ""w+b"") ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ FileNotFoundError: [Errno 2] No such file or directory: '/Users/yankaituo/Desktop/my_movie/chimovie_Mtx7-04112.ppm' Error processing trigger ""frame drawn"": FileNotFoundError: [Errno 2] No such file or directory: '/Users/yankaituo/Desktop/my_movie/chimovie_Mtx7-04112.ppm' File ""/Applications/ChimeraX-1.12-rc2026.05.06.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/PIL/Image.py"", line 2583, in save fp = builtins.open(filename, ""w+b"") ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ See log for complete Python traceback. > movie encode /Users/yankaituo/Desktop/protein_spin_3s.mp4 framerate 60 > quality high Movie encoding failed because no images were recorded. > movie stop Not currently recording > movie record > turn y 2 180 > wait 180 Traceback (most recent call last): File ""/Applications/ChimeraX-1.12-rc2026.05.06.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/core/triggerset.py"", line 149, in invoke return self._func(self._name, data) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""/Applications/ChimeraX-1.12-rc2026.05.06.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/movie/movie.py"", line 177, in capture_image i.save(save_path, self.img_fmt) File ""/Applications/ChimeraX-1.12-rc2026.05.06.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/PIL/Image.py"", line 2583, in save fp = builtins.open(filename, ""w+b"") ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ FileNotFoundError: [Errno 2] No such file or directory: '/Users/yankaituo/Desktop/my_movie/chimovie_Mtx7-04113.ppm' Error processing trigger ""frame drawn"": FileNotFoundError: [Errno 2] No such file or directory: '/Users/yankaituo/Desktop/my_movie/chimovie_Mtx7-04113.ppm' File ""/Applications/ChimeraX-1.12-rc2026.05.06.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/PIL/Image.py"", line 2583, in save fp = builtins.open(filename, ""w+b"") ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ See log for complete Python traceback. > movie encode /Users/yankaituo/Desktop/protein_spin_3s.mp4 framerate 60 > quality high Movie encoding failed because no images were recorded. OpenGL version: 4.1 Metal - 89.4 OpenGL renderer: Apple M3 OpenGL vendor: Apple Python: 3.11.9 Locale: en_US.UTF-8 Qt version: PyQt6 6.10.2, Qt 6.10.0 Qt runtime version: 6.10.1 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Air Model Identifier: Mac15,12 Model Number: MXCU3CH/A Chip: Apple M3 Total Number of Cores: 8 (4 performance and 4 efficiency) Memory: 16 GB System Firmware Version: 11881.121.1 OS Loader Version: 11881.121.1 Software: System Software Overview: System Version: macOS 15.5 (24F74) Kernel Version: Darwin 24.5.0 Time since boot: 4天22小时9分钟 Graphics/Displays: Apple M3: Chipset Model: Apple M3 Type: GPU Bus: Built-In Total Number of Cores: 10 Vendor: Apple (0x106b) Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-in Liquid Retina Display Resolution: 2560 x 1664 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: No Connection Type: Internal Installed Packages: accessible-pygments: 0.0.5 aiohappyeyeballs: 2.6.1 aiohttp: 3.13.1 aiosignal: 1.4.0 alabaster: 1.0.0 annotated-types: 0.7.0 anyio: 4.13.0 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 3.0.1 attrs: 26.1.0 babel: 2.18.0 beautifulsoup4: 4.13.5 blockdiag: 3.0.0 blosc2: 4.1.2 bs4: 0.0.2 build: 1.3.0 certifi: 2025.7.14 cftime: 1.6.5 charset-normalizer: 3.4.7 ChimeraX-AddCharge: 1.5.20 ChimeraX-AddH: 2.2.8 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.6.2 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 3.2 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Animations: 1.0 ChimeraX-Aniso: 1.3.2 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.67.1 ChimeraX-AtomicLibrary: 14.4 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.3 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-Boltz: 1.1 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.2 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.6.0 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4.1 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.5 ChimeraX-ChemGroup: 2.0.2 ChimeraX-Clashes: 2.4 ChimeraX-Cluster: 1.0 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.8 ChimeraX-CommandLine: 1.3.1 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.12rc202605052234 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.5 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.4 ChimeraX-Dicom: 1.2.7 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.2.1 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5.3 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.4 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.8.2 ChimeraX-Label: 1.5 ChimeraX-LightingGUI: 1.0 ChimeraX-ListInfo: 1.3.1 ChimeraX-Log: 1.2.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.3 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchAlign: 1.1 ChimeraX-MatchMaker: 2.4 ChimeraX-MCopy: 1.0 ChimeraX-MCPServer: 0.2.0 ChimeraX-MDcrds: 2.19 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-Minimize: 1.3.8 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.16 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.23 ChimeraX-ModelPanel: 1.6.1 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0.1 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.15.4 ChimeraX-OpenFold: 1.0 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.13 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.5 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.4 ChimeraX-ProfileGrids: 1.6 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.8.2 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.3 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.2 ChimeraX-Scenes: 0.3.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.3 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.12 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.18 ChimeraX-Shape: 1.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.1 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SNFG: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.19.3 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5.3 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.4 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.50.6 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.2 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDock: 1.6.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.5 ChimeraX-Zone: 1.0.1 click: 8.3.3 colorama: 0.4.6 comm: 0.2.3 contourpy: 1.3.3 coverage: 7.13.5 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.2.4 debugpy: 1.8.20 decorator: 5.2.1 docutils: 0.21.2 executing: 2.2.1 filelock: 3.19.1 fonttools: 4.62.1 frozenlist: 1.8.0 funcparserlib: 2.0.0a0 glfw: 2.10.0 grako: 3.16.5 h11: 0.16.0 h5py: 3.16.0 html2text: 2025.4.15 httpcore: 1.0.9 httpx: 0.28.1 httpx-sse: 0.4.3 idna: 3.13 ihm: 2.2 imagecodecs: 2024.6.1 imagesize: 2.0.0 iniconfig: 2.3.0 ipykernel: 7.1.0 ipython: 9.9.0 ipython_pygments_lexers: 1.1.1 jedi: 0.19.2 Jinja2: 3.1.6 jsonschema: 4.26.0 jsonschema-specifications: 2025.9.1 jupyter_client: 8.8.0 jupyter_core: 5.9.1 kiwisolver: 1.5.0 line_profiler: 5.0.0 lxml: 6.0.2 lz4: 4.3.2 Markdown: 3.8.2 MarkupSafe: 3.0.3 matplotlib: 3.10.7 matplotlib-inline: 0.2.1 mcp: 1.18.0 msgpack: 1.1.1 multidict: 6.7.1 narwhals: 2.20.0 ndindex: 1.10.1 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.14.1 numpy: 1.26.4 OpenMM: 8.4.0 openvr: 1.26.701 packaging: 25.0 ParmEd: 4.2.2 parso: 0.8.7 pep517: 0.13.1 pexpect: 4.9.0 pickleshare: 0.7.5 pillow: 11.3.0 pip: 25.2 pkginfo: 1.12.1.2 platformdirs: 4.9.6 plotly: 6.7.0 pluggy: 1.6.0 prompt_toolkit: 3.0.52 propcache: 0.4.1 psutil: 7.0.0 ptyprocess: 0.7.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pybind11: 3.0.1 pycollada: 0.8 pydantic: 2.13.3 pydantic-settings: 2.14.0 pydantic_core: 2.46.3 pydata-sphinx-theme: 0.17.1 pydicom: 2.4.4 Pygments: 2.18.0 pynmrstar: 3.5.1 pynrrd: 1.0.0 PyOpenGL: 3.1.10 PyOpenGL-accelerate: 3.1.10 pyopenxr: 1.1.4501 pyparsing: 3.3.2 pyproject_hooks: 1.2.0 PyQt6-commercial: 6.10.2 PyQt6-Qt6: 6.10.1 PyQt6-WebEngine-commercial: 6.10.0 PyQt6-WebEngine-Qt6: 6.10.1 PyQt6_sip: 13.10.3 pytest: 9.0.3 pytest-cov: 7.1.0 python-dateutil: 2.9.0.post0 python-dotenv: 1.2.2 python-multipart: 0.0.27 pyzmq: 27.1.0 qtconsole: 5.7.0 QtPy: 2.4.3 qtshim: 1.2.2 RandomWords: 0.4.0 referencing: 0.37.0 requests: 2.32.5 roman-numerals: 4.1.0 rpds-py: 0.30.0 scipy: 1.14.0 setuptools: 80.9.0 sfftk-rw: 0.8.1 six: 1.17.0 snowballstemmer: 3.0.1 sortedcontainers: 2.4.0 soupsieve: 2.8.3 Sphinx: 9.0.4 sphinx-autodoc-typehints: 3.6.1 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 sse-starlette: 3.4.1 stack-data: 0.6.3 starlette: 1.0.0 superqt: 0.7.6 tables: 3.10.2 tcia_utils: 3.2.1 tifffile: 2025.3.13 tinyarray: 1.2.5 tornado: 6.5.5 tqdm: 4.67.3 traitlets: 5.14.3 typing-inspection: 0.4.2 typing_extensions: 4.15.0 Unidecode: 1.4.0 urllib3: 2.6.3 uvicorn: 0.46.0 wcwidth: 0.7.0 webcolors: 24.11.1 wheel: 0.45.1 wheel-filename: 1.4.2 yarl: 1.23.0 }}} " defect closed normal Input/Output not a bug all ChimeraX