id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 20360 Crash on Mac waking from sleep halle.andrews-clark@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-26.3-x86_64-i386-64bit ChimeraX Version: 1.8 (2024-06-10 23:15:52 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Segmentation fault Current thread 0x00000002009f9e40 (most recent call first): File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py"", line 315 in event_loop File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1003 in init File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1166 in File """", line 88 in _run_code File """", line 198 in _run_module_as_main Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.surface._surface, chimerax.map._map, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.pdb_lib._load_libs, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, psutil._psutil_osx, psutil._psutil_posix, PIL._imagingmath, chimerax.graphics._graphics, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, lz4._version, lz4.frame._frame, msgpack._cmsgpack, chimerax.core._serialize, chimerax.atomic._ribbons, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.pdb._pdbio, lxml._elementpath, lxml.etree (total: 61) {""app_name"":""ChimeraX"",""timestamp"":""2026-05-19 17:28:36.00 +0200"",""app_version"":""1.8.0"",""slice_uuid"":""194a3167-3db5-3029-8d22-1d742b826bb9"",""build_version"":""1.8.0.0"",""platform"":1,""bundleID"":""edu.ucsf.cgl.ChimeraX"",""share_with_app_devs"":1,""is_first_party"":0,""bug_type"":""309"",""os_version"":""macOS 26.3 (25D125)"",""roots_installed"":0,""name"":""ChimeraX"",""incident_id"":""E669E62F-2318-4813-B5D1-CF12B38F1FD5""} { ""uptime"" : 710000, ""procRole"" : ""Foreground"", ""version"" : 2, ""userID"" : 502, ""deployVersion"" : 210, ""modelCode"" : ""MacBookPro17,1"", ""coalitionID"" : 110469, ""osVersion"" : { ""train"" : ""macOS 26.3"", ""build"" : ""25D125"", ""releaseType"" : ""User"" }, ""captureTime"" : ""2026-05-19 17:12:39.3276 +0200"", ""codeSigningMonitor"" : 1, ""incident"" : ""E669E62F-2318-4813-B5D1-CF12B38F1FD5"", ""pid"" : 29390, ""translated"" : true, ""cpuType"" : ""X86-64"", ""procLaunch"" : ""2026-05-19 13:59:33.6676 +0200"", ""procStartAbsTime"" : 16802689782557, ""procExitAbsTime"" : 17080677442298, ""procName"" : ""ChimeraX"", ""procPath"" : ""\/Applications\/ChimeraX-1.8.app\/Contents\/MacOS\/ChimeraX"", ""bundleInfo"" : {""CFBundleShortVersionString"":""1.8.0"",""CFBundleVersion"":""1.8.0.0"",""CFBundleIdentifier"":""edu.ucsf.cgl.ChimeraX""}, ""storeInfo"" : {""deviceIdentifierForVendor"":""33116714-09C9-5A00-BCA9-4034A28E2E8E"",""thirdParty"":true}, ""parentProc"" : ""launchd"", ""parentPid"" : 1, ""coalitionName"" : ""edu.ucsf.cgl.ChimeraX"", ""crashReporterKey"" : ""02E04C25-79CA-2EF6-F248-C1774882463F"", ""appleIntelligenceStatus"" : {""reasons"":[""siriAssetIsNotReady"",""notOptedIn"",""assetIsNotReady""],""state"":""unavailable""}, ""developerMode"" : 1, ""bootProgressRegister"" : ""0x3f000000"", ""codeSigningID"" : ""edu.ucsf.cgl.ChimeraX"", ""codeSigningTeamID"" : ""LWV8X224YF"", ""codeSigningFlags"" : 570490881, ""codeSigningValidationCategory"" : 6, ""codeSigningTrustLevel"" : 4294967295, ""codeSigningAuxiliaryInfo"" : 0, ""bootSessionUUID"" : ""3B7E11F8-EC7A-483F-8808-4B8A8C5E6BA1"", ""wakeTime"" : 18730, ""sleepWakeUUID"" : ""97C9ADF8-79FC-49D9-9F88-793BF4D3857D"", ""sip"" : ""disabled"", ""vmRegionInfo"" : ""0x326f00bf4d18 is not in any region. 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===== UCSF ChimeraX version: 1.8 (2024-06-10) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Users/haandrew/Downloads/cryosparc_P3_J51_002_volume_map(1).mrc > /Users/haandrew/Downloads/cryosparc_P3_J50_002_volume_map_sharp.mrc > /Users/haandrew/Downloads/cryosparc_P3_J50_002_volume_map.mrc > /Users/haandrew/Downloads/cryosparc_P3_J51_002_volume_map_sharp.mrc > /Users/haandrew/Downloads/cryosparc_P3_J51_002_volume_map.mrc Opened cryosparc_P3_J51_002_volume_map(1).mrc as #1.1, grid size 128,128,128, pixel 3.35, shown at level 1.28, step 1, values float32 Opened cryosparc_P3_J50_002_volume_map_sharp.mrc as #1.2, grid size 128,128,128, pixel 3.35, shown at level 1.89, step 1, values float32 Opened cryosparc_P3_J50_002_volume_map.mrc as #1.3, grid size 128,128,128, pixel 3.35, shown at level 1.29, step 1, values float32 Opened cryosparc_P3_J51_002_volume_map_sharp.mrc as #1.4, grid size 128,128,128, pixel 3.35, shown at level 1.89, step 1, values float32 Opened cryosparc_P3_J51_002_volume_map.mrc as #1.5, grid size 128,128,128, pixel 3.35, shown at level 1.28, step 1, values float32 > hide #!1 models > open ""/Users/haandrew/Documents/progress/2025/Cryo-EM/100625 /3DV_tRNA/J39 > and exit focus mask /NU/cryosparc_P1_J49_001_volume_map_sharp.mrc"" > ""/Users/haandrew/Documents/progress/2025/Cryo-EM/100625 /3DV_tRNA/J39 and > exit focus mask /NU/cryosparc_P1_J49_001_volume_map.mrc"" Opened cryosparc_P1_J49_001_volume_map_sharp.mrc as #2.1, grid size 128,128,128, pixel 3.32, shown at level 1.35, step 1, values float32 Opened cryosparc_P1_J49_001_volume_map.mrc as #2.2, grid size 128,128,128, pixel 3.32, shown at level 1.03, step 1, values float32 > open ""/Users/haandrew/Documents/progress/2026/Cryo-EM/Stm1 mask 2.mrc"" Opened Stm1 mask 2.mrc as #3, grid size 128,128,128, pixel 3.32, shown at level 0.0871, step 1, values float32 > color #2.2 #919191ff models > hide #!2.2 models > volume #3 level 0.362 > hide #!2.1 models > show #!2.1 models > color #2.1 #919191ff models > volume #2.2 level 0.4564 > volume #3 color #e5bf996b > ui tool show ""Side View"" > ui mousemode right ""map eraser"" > close session > open ""/Users/haandrew/Documents/progress/2026/Cryo-EM/Stm1 apo study.cxs"" Opened cryosparc_P3_J50_002_volume_map_sharp.mrc as #1, grid size 128,128,128, pixel 3.35, shown at level 0.687, step 1, values float32 Opened cryosparc_P3_J50_002_volume_map.mrc as #2, grid size 128,128,128, pixel 3.35, shown at level 0.63, step 1, values float32 Opened cryosparc_P1_J49_001_volume_map.mrc as #3.1, grid size 128,128,128, pixel 3.32, shown at level 0.261, step 1, values float32 Opened cryosparc_P1_J49_001_volume_map_sharp.mrc as #3.2, grid size 128,128,128, pixel 3.32, shown at level 0.656, step 1, values float32 Opened cryosparc_P3_J51_002_volume_map.mrc as #4, grid size 128,128,128, pixel 3.35, shown at level 0.86, step 1, values float32 Opened cryosparc_P3_J51_002_volume_map_sharp.mrc as #5, grid size 128,128,128, pixel 3.35, shown at level 1, step 1, values float32 Opened cryosparc_P3_J50_002_volume_map_sharp.mrc z flip as #7, grid size 128,128,128, pixel 3.35, shown at level 0.93, step 1, values float32 Opened cryosparc_P3_J50_002_volume_map.mrc z flip as #8, grid size 128,128,128, pixel 3.35, shown at level 1.18, step 1, values float32 Opened cryosparc_P3_J51_002_volume_map.mrc z flip as #9, grid size 128,128,128, pixel 3.35, shown at level 1.21, step 1, values float32 Opened cryosparc_P3_J51_002_volume_map_sharp.mrc z flip as #10, grid size 128,128,128, pixel 3.35, shown at level 1.23, step 1, values float32 Opened cryosparc_P1_J49_001_volume_map_sharp.mrc as #13.1, grid size 128,128,128, pixel 3.32, shown at level 0.595, step 1, values float32 Opened cryosparc_P1_J49_001_volume_map.mrc as #13.2, grid size 128,128,128, pixel 3.32, shown at level 0.532, step 1, values float32 opened ChimeraX session > show #!12 models > sequence chain #12/m Alignment identifier is 12/m > select #12/m:1 20 atoms, 22 bonds, 1 residue, 1 model selected > select #12/m 1611 atoms, 1799 bonds, 76 residues, 1 model selected > hide sel target a > sequence chain #12/B Alignment identifier is 12/B > select #12/B:20 11 atoms, 11 bonds, 1 residue, 1 model selected > select #12/B 1605 atoms, 1625 bonds, 206 residues, 1 model selected > hide #!13.1 models > hide #!13 models > sequence chain #12/l Alignment identifier is 12/l > select #12/l:1-2 42 atoms, 46 bonds, 2 residues, 1 model selected > select #12/l 131 atoms, 147 bonds, 6 residues, 1 model selected > hide sel target a > select #12/n 1624 atoms, 1814 bonds, 75 residues, 1 model selected > hide sel target a > select #12/eI 1143 atoms, 1158 bonds, 154 residues, 1 model selected > hide sel target a > ~select Nothing selected > color #12 #797979ff > show #!4 models > show #!5 models > hide #!5 models > hide #!4 models > show #!6 models > color #6 #ff00004c > show #!13.1 models > toolshed show Downloading bundle ChimeraX_maskChains-1.4-py3-none-any.whl Installed ChimeraX-maskChains (1.4) > hide #!13.1 models > show #!13.1 models > hide #!13.1 models > hide #!13 models > hide #!12 models > show #!12 models > show #!13.1 models > hide #!12 models > hide #!6 models > hide #!13 models > show #!7 models > show #!10 models > hide #!10 models > show #!10 models > hide #!7 models > show #!1 models > volume #1 level 0.339 > volume #10 level 0.3476 > surface dust #1 size 33.5 > surface dust #10 size 33.5 > Vol resample #10 on grid #1 Unknown command: Vol resample #10 on grid #1 > Vol resample #10 ongrid #1 Unknown command: Vol resample #10 ongrid #1 > volume resample #10 onGrid #1 Opened cryosparc_P3_J51_002_volume_map_sharp.mrc z flip resampled as #14, grid size 128,128,128, pixel 3.35, shown at step 1, values float32 > volume morph #1,10 Map positions are not the same, cryosparc_P3_J51_002_volume_map_sharp.mrc z flip #10 and cryosparc_P3_J50_002_volume_map_sharp.mrc #1. Use the ""volume resample"" command to make a copy of one map with the same grid as the other map. > volume resample #10 onGrid #1 Opened cryosparc_P3_J51_002_volume_map_sharp.mrc z flip resampled as #15, grid size 128,128,128, pixel 3.35, shown at step 1, values float32 > volume resample #1 onGrid #10 Opened cryosparc_P3_J50_002_volume_map_sharp.mrc resampled as #16, grid size 128,128,128, pixel 3.35, shown at step 1, values float32 > hide #!15 target m > close #15 > volume morph #14,16 Map positions are not the same, cryosparc_P3_J50_002_volume_map_sharp.mrc resampled #16 and cryosparc_P3_J51_002_volume_map_sharp.mrc z flip resampled #14. Use the ""volume resample"" command to make a copy of one map with the same grid as the other map. > volume morph #1,14 Opened morph as #15, grid size 128,128,128, pixel 3.35, shown at step 1, values float32 > volume #14 level 0.339 > hide #!16 target m > hide #!15 target m > close #15 > close #16 > volume morph #1,14 Opened morph as #15, grid size 128,128,128, pixel 3.35, shown at step 1, values float32 > open ""/Users/haandrew/Documents/progress/2026/Cryo-EM/2025-09-25/PDB > 10.1038/S2c.map"" ""/Users/haandrew/Documents/progress/2026/Cryo- > EM/2025-09-25/PDB 10.1038/S2d.map"" > ""/Users/haandrew/Documents/progress/2026/Cryo-EM/2025-09-25/PDB > 10.1038/S2e.map"" ""/Users/haandrew/Documents/progress/2026/Cryo- > EM/2025-09-25/PDB 10.1038/S2f.map"" > ""/Users/haandrew/Documents/progress/2026/Cryo-EM/2025-09-25/PDB > 10.1038/S2b.map"" ""/Users/haandrew/Documents/progress/2026/Cryo- > EM/2025-09-25/PDB 10.1038/s2a.map"" Opened S2c.map as #16.1, grid size 400,400,400, pixel 1.32, shown at level 0.295, step 2, values float32 Opened S2d.map as #16.2, grid size 400,400,400, pixel 1.32, shown at level 0.306, step 2, values float32 Opened S2e.map as #16.3, grid size 400,400,400, pixel 1.32, shown at level 0.226, step 2, values float32 Opened S2f.map as #16.4, grid size 400,400,400, pixel 1.32, shown at level 0.188, step 2, values float32 Opened S2b.map as #16.5, grid size 400,400,400, pixel 1.32, shown at level 0.335, step 2, values float32 Opened s2a.map as #16.6, grid size 400,400,400, pixel 1.32, shown at level 0.281, step 2, values float32 > hide #!15 models > surface dust #16.1 size 13.2 > surface dust #16.2 size 13.2 > surface dust #16.3 size 13.2 > surface dust #16.4 size 13.2 > surface dust #16.5 size 13.2 > surface dust #16.6 size 13.2 > volume #16.6 level 0.3844 > volume #16.5 level 0.6909 > volume #16.4 level 0.2621 > volume #16.3 level 0.3078 > volume #16.2 level 0.5189 > volume #16.1 level 0.5872 > volume #15 level 1.1 > volume #14 level 1.387 > hide #!14 models > hide #!15 models > select add #16 13 models selected > select subtract #16.1 11 models selected > select add #16 13 models selected > show #!1 models > ui mousemode right ""translate selected models"" > volume #1 level 1.765 > volume #1 level 1 > view matrix models #16,1,0,0,-678.03,0,1,0,-283.98,0,0,1,339.69 > view matrix models #16,1,0,0,-665.75,0,1,0,-16.701,0,0,1,289.98 > ui mousemode right ""rotate selected models"" > view matrix models > #16,-0.5719,-0.81933,-0.040274,45.663,0.56554,-0.42937,0.70413,57.098,-0.59421,0.37992,0.70893,426.98 > view matrix models > #16,-0.27195,-0.61105,0.74341,-308.36,0.96178,-0.1468,0.23117,-18.477,-0.032125,0.77786,0.62761,166.42 > ui mousemode right ""translate selected models"" > view matrix models > #16,-0.27195,-0.61105,0.74341,-283.91,0.96178,-0.1468,0.23117,93.066,-0.032125,0.77786,0.62761,417.76 > view matrix models > #16,-0.27195,-0.61105,0.74341,-629.81,0.96178,-0.1468,0.23117,251.14,-0.032125,0.77786,0.62761,415.87 > view matrix models > #16,-0.27195,-0.61105,0.74341,-465.06,0.96178,-0.1468,0.23117,-175.25,-0.032125,0.77786,0.62761,583.7 > view matrix models > #16,-0.27195,-0.61105,0.74341,-253.52,0.96178,-0.1468,0.23117,-205.13,-0.032125,0.77786,0.62761,488.12 > ui mousemode right ""rotate selected models"" > view matrix models > #16,-0.30075,-0.67254,0.6762,-209.33,0.82764,-0.53635,-0.16534,53.061,0.47388,0.50992,0.71793,396.32 > view matrix models > #16,-0.30115,-0.67288,0.67568,-208.97,0.82551,-0.53865,-0.1685,55.208,0.47733,0.50703,0.71768,396.25 > view matrix models > #16,-0.29833,-0.67034,0.67945,-211.54,0.84053,-0.5218,-0.14574,39.889,0.45223,0.52762,0.7191,397.11 > view matrix models > #16,-0.29733,-0.66938,0.68082,-212.47,0.84577,-0.51552,-0.13749,34.344,0.44301,0.53494,0.71943,397.55 > view matrix models > #16,-0.29941,-0.67134,0.67798,-210.54,0.83479,-0.52842,-0.15458,45.837,0.46203,0.51969,0.71864,396.73 > view matrix models > #16,-0.56519,-0.48619,0.66647,-184.83,-0.80838,0.48755,-0.32986,270.1,-0.16456,-0.7252,-0.66859,1310.6 > view matrix models > #16,-0.56951,-0.52622,0.63146,-162.55,-0.81193,0.24036,-0.53198,397.23,0.12816,-0.81567,-0.56414,1224.7 > view matrix models > #16,0.55442,-0.30186,-0.77557,-188.91,-0.16336,-0.95325,0.25423,355.51,-0.81605,-0.014253,-0.57781,1266.7 > view matrix models > #16,0.24478,0.4158,0.8759,-742.76,0.33051,-0.88506,0.32778,172.1,0.91151,0.20926,-0.35407,638.27 > view matrix models > #16,-0.36943,-0.91976,0.13252,25.661,0.66521,-0.36133,-0.65341,176.29,0.64886,-0.15323,0.74532,534.48 > view matrix models > #16,-0.078622,-0.92521,0.37121,-120.35,0.98665,-0.12549,-0.10381,-131.17,0.14263,0.35809,0.92273,484.42 > view matrix models > #16,0.14538,-0.9787,0.14496,-111.03,0.53355,-0.045831,-0.84453,171.31,0.83318,0.20012,0.51552,436.19 > view matrix models > #16,-0.59757,-0.47398,0.64673,-174.97,0.79931,-0.41586,0.43377,-130.99,0.063352,0.77615,0.62736,461 > ui mousemode right ""translate selected models"" > view matrix models > #16,-0.59757,-0.47398,0.64673,-162.92,0.79931,-0.41586,0.43377,162.56,0.063352,0.77615,0.62736,392.97 > fitmap #16.1 inMap #1 Fit map S2c.map in map cryosparc_P3_J50_002_volume_map_sharp.mrc using 26877 points correlation = 0.5341, correlation about mean = 0.05192, overlap = 1.114e+04 steps = 132, shift = 10.6, angle = 10.8 degrees Position of S2c.map (#16.1) relative to cryosparc_P3_J50_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation 0.99810893 0.02343263 0.05682852 393.64453221 -0.02653555 -0.66966662 0.74218763 -13.40747242 0.05544757 -0.74229207 -0.66777844 1149.28256877 Axis -0.99943354 0.00092973 -0.03364133 Axis point 0.00000000 245.98730135 570.91025330 Rotation angle (degrees) 132.04145146 Shift along axis -432.09741016 > fitmap #16.2-16.6 inMap #1 No atoms or maps for #16.2-16.6 > fitmap #16.2 inMap #1 Fit map S2d.map in map cryosparc_P3_J50_002_volume_map_sharp.mrc using 34291 points correlation = 0.5249, correlation about mean = 0.05768, overlap = 1.285e+04 steps = 80, shift = 7.88, angle = 9.15 degrees Position of S2d.map (#16.2) relative to cryosparc_P3_J50_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation 0.99732265 0.01469877 0.07163436 391.65963780 -0.04116480 -0.69679380 0.71608928 1.94445090 0.06044001 -0.71712087 -0.69432317 1147.77959402 Axis -0.99921079 0.00780452 -0.03894717 Axis point 0.00000000 241.64873161 565.12583494 Rotation angle (degrees) 134.17858995 Shift along axis -436.03812468 > fitmap #16.3 inMap #1 Fit map S2e.map in map cryosparc_P3_J50_002_volume_map_sharp.mrc using 42823 points correlation = 0.5058, correlation about mean = 0.02565, overlap = 8112 steps = 112, shift = 6.98, angle = 6.94 degrees Position of S2e.map (#16.3) relative to cryosparc_P3_J50_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation 0.98397250 0.05446366 0.16979935 361.02512654 -0.07687108 -0.72964112 0.67949589 25.32942925 0.16090042 -0.68165794 -0.71376012 1119.44431731 Axis -0.99535623 0.00650742 -0.09603974 Axis point 0.00000000 227.23380549 536.67215222 Rotation angle (degrees) 136.86245385 Shift along axis -466.69491855 > fitmap #16.4 inMap #1 Fit map S2f.map in map cryosparc_P3_J50_002_volume_map_sharp.mrc using 43363 points correlation = 0.5083, correlation about mean = 0.0391, overlap = 7379 steps = 104, shift = 7, angle = 7.68 degrees Position of S2f.map (#16.4) relative to cryosparc_P3_J50_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation 0.98309592 0.04540673 0.17737145 361.73202821 -0.08952496 -0.72583984 0.68201305 27.98663913 0.15971125 -0.68636342 -0.70950516 1119.27620975 Axis -0.99509141 0.01284260 -0.09812312 Axis point 0.00000000 231.12753057 534.99539559 Rotation angle (degrees) 136.56247695 Shift along axis -469.42389111 > fitmap #16.5 inMap #1 Fit map S2b.map in map cryosparc_P3_J50_002_volume_map_sharp.mrc using 25782 points correlation = 0.5326, correlation about mean = 0.04093, overlap = 1.336e+04 steps = 92, shift = 11.3, angle = 11.6 degrees Position of S2b.map (#16.5) relative to cryosparc_P3_J50_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation 0.99758587 0.01719536 0.06728118 392.17788535 -0.03933875 -0.65847861 0.75157061 -14.75909954 0.05722675 -0.75240297 -0.65621252 1147.82367441 Axis -0.99927195 0.00668038 -0.03756246 Axis point 0.00000000 250.81144779 569.23174617 Rotation angle (degrees) 131.18958139 Shift along axis -435.10603847 > fitmap #16.6 inMap #1 Fit map s2a.map in map cryosparc_P3_J50_002_volume_map_sharp.mrc using 50384 points correlation = 0.502, correlation about mean = 0.05148, overlap = 1.342e+04 steps = 120, shift = 8.31, angle = 8.12 degrees Position of s2a.map (#16.6) relative to cryosparc_P3_J50_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation 0.98166052 0.02721070 0.18868544 363.50315852 -0.10799927 -0.73623369 0.66805397 41.35862859 0.15709479 -0.67618010 -0.71979281 1120.96045999 Axis -0.99470748 0.02337647 -0.10005279 Axis point 0.00000000 234.86628620 531.95176394 Rotation angle (degrees) 137.49199920 Shift along axis -472.76771662 > view matrix models > #16,-0.59757,-0.47398,0.64673,-150.28,0.79931,-0.41586,0.43377,-63.822,0.063352,0.77615,0.62736,633.15 > view matrix models > #16,-0.59757,-0.47398,0.64673,-170.34,0.79931,-0.41586,0.43377,-30.907,0.063352,0.77615,0.62736,560.41 > view matrix models > #16,-0.59757,-0.47398,0.64673,-174.48,0.79931,-0.41586,0.43377,206.88,0.063352,0.77615,0.62736,454.83 > view matrix models > #16,-0.59757,-0.47398,0.64673,-130.36,0.79931,-0.41586,0.43377,173.27,0.063352,0.77615,0.62736,397.21 > view matrix models > #16,-0.59757,-0.47398,0.64673,-260.11,0.79931,-0.41586,0.43377,-158.3,0.063352,0.77615,0.62736,510.19 > ui mousemode right ""rotate selected models"" > view matrix models > #16,0.26639,-0.56479,-0.78106,-109.82,0.082779,-0.79394,0.60234,115.71,-0.9603,-0.22511,-0.16475,1307.6 > view matrix models > #16,0.53583,0.33757,-0.77391,-453.36,0.10734,-0.9364,-0.33412,393.78,-0.83748,0.095965,-0.53798,1275.9 > view matrix models > #16,0.67058,0.18488,-0.71843,-462.52,0.074315,-0.98032,-0.18291,376.36,-0.73811,0.069263,-0.67112,1289.7 > ui mousemode right ""translate selected models"" > view matrix models > #16,0.67058,0.18488,-0.71843,-396.26,0.074315,-0.98032,-0.18291,713.53,-0.73811,0.069263,-0.67112,1160.8 > view matrix models > #16,0.67058,0.18488,-0.71843,-317.89,0.074315,-0.98032,-0.18291,710.12,-0.73811,0.069263,-0.67112,1168.8 > fitmap #16.6 inMap #1 Fit map s2a.map in map cryosparc_P3_J50_002_volume_map_sharp.mrc using 50384 points correlation = 0.8927, correlation about mean = 0.3357, overlap = 4.1e+04 steps = 92, shift = 16.1, angle = 5.12 degrees Position of s2a.map (#16.6) relative to cryosparc_P3_J50_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation 0.99203477 0.01414933 0.12516715 381.41899028 -0.06819224 -0.77514308 0.62809475 38.12321307 0.10590957 -0.63162726 -0.76800401 1128.06691755 Axis -0.99775445 0.01525284 -0.06521809 Axis point 0.00000000 217.69374214 543.54280324 Rotation angle (degrees) 140.85548372 Shift along axis -453.55138409 > fitmap #16.5 inMap #1 Fit map S2b.map in map cryosparc_P3_J50_002_volume_map_sharp.mrc using 25782 points correlation = 0.902, correlation about mean = 0.1696, overlap = 3.938e+04 steps = 88, shift = 20.1, angle = 9.86 degrees Position of S2b.map (#16.5) relative to cryosparc_P3_J50_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation 0.99274117 0.01281206 0.11958600 382.94969972 -0.06603953 -0.77293742 0.63103607 36.40729845 0.10051736 -0.63435290 -0.76648070 1129.64421589 Axis -0.99795125 0.01503851 -0.06218644 Axis point 0.00000000 218.40206678 545.15188456 Rotation angle (degrees) 140.65463473 Shift along axis -451.86617282 > fitmap #16.4 inMap #1 Fit map S2f.map in map cryosparc_P3_J50_002_volume_map_sharp.mrc using 43363 points correlation = 0.9339, correlation about mean = 0.3669, overlap = 2.56e+04 steps = 72, shift = 13.6, angle = 5.57 degrees Position of S2f.map (#16.4) relative to cryosparc_P3_J50_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation 0.99236513 0.01304928 0.12264244 382.22103763 -0.06769560 -0.77358126 0.63007090 37.15149401 0.10309586 -0.63356275 -0.76679169 1128.88862407 Axis -0.99784580 0.01543522 -0.06376131 Axis point 0.00000000 218.26587127 544.33816557 Rotation angle (degrees) 140.71481055 Shift along axis -452.80363621 > fitmap #16.3 inMap #1 Fit map S2e.map in map cryosparc_P3_J50_002_volume_map_sharp.mrc using 42823 points correlation = 0.9317, correlation about mean = 0.4405, overlap = 2.82e+04 steps = 84, shift = 13, angle = 5.3 degrees Position of S2e.map (#16.3) relative to cryosparc_P3_J50_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation 0.99234096 0.01417734 0.12271276 381.96111981 -0.06673881 -0.77440109 0.62916523 37.29862155 0.10394879 -0.63253613 -0.76752374 1128.60860135 Axis -0.99783994 0.01483984 -0.06399404 Axis point 0.00000000 217.76891440 544.19917409 Rotation angle (degrees) 140.78617247 Shift along axis -452.80677789 > fitmap #16.2 inMap #1 Fit map S2d.map in map cryosparc_P3_J50_002_volume_map_sharp.mrc using 34291 points correlation = 0.9094, correlation about mean = 0.2285, overlap = 3.997e+04 steps = 80, shift = 16.8, angle = 6.96 degrees Position of S2d.map (#16.2) relative to cryosparc_P3_J50_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation 0.99275819 0.01276894 0.11944928 383.01504979 -0.06602558 -0.77268558 0.63134587 36.23777294 0.10035835 -0.63466049 -0.76624687 1129.66166308 Axis -0.99795576 0.01504882 -0.06211141 Axis point 0.00000000 218.45159371 545.19781059 Rotation angle (degrees) 140.63192584 Shift along axis -451.85162120 > fitmap #16.1 inMap #1 Fit map S2c.map in map cryosparc_P3_J50_002_volume_map_sharp.mrc using 26877 points correlation = 0.912, correlation about mean = 0.2011, overlap = 3.432e+04 steps = 68, shift = 19.4, angle = 9.17 degrees Position of S2c.map (#16.1) relative to cryosparc_P3_J50_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation 0.99281982 0.01183988 0.11903198 383.32880232 -0.06657916 -0.77201081 0.63211274 35.96713020 0.09937811 -0.63549911 -0.76567935 1129.95128091 Axis -0.99797243 0.01547320 -0.06173818 Axis point 0.00000000 218.79992284 545.40679752 Rotation angle (degrees) 140.57307169 Shift along axis -451.75618232 > hide #!16 models > show #!16 models > select subtract #16 Nothing selected > open /Users/haandrew/Downloads/cryosparc_P1_J125_001_volume_map_sharp.mrc Opened cryosparc_P1_J125_001_volume_map_sharp.mrc as #17, grid size 128,128,128, pixel 3.32, shown at level 1.1, step 1, values float32 > open /Users/haandrew/Downloads/cryosparc_P1_J125_001_volume_map.mrc Opened cryosparc_P1_J125_001_volume_map.mrc as #18, grid size 128,128,128, pixel 3.32, shown at level 0.954, step 1, values float32 > open /Users/haandrew/Downloads/cryosparc_P1_J124_001_volume_map_sharp.mrc Opened cryosparc_P1_J124_001_volume_map_sharp.mrc as #19, grid size 128,128,128, pixel 3.32, shown at level 1.13, step 1, values float32 > open /Users/haandrew/Downloads/cryosparc_P1_J124_001_volume_map.mrc Opened cryosparc_P1_J124_001_volume_map.mrc as #20, grid size 128,128,128, pixel 3.32, shown at level 0.953, step 1, values float32 > open /Users/haandrew/Downloads/cryosparc_P1_J123_001_volume_map_sharp.mrc Opened cryosparc_P1_J123_001_volume_map_sharp.mrc as #21, grid size 128,128,128, pixel 3.32, shown at level 0.958, step 1, values float32 > open /Users/haandrew/Downloads/cryosparc_P1_J123_001_volume_map.mrc Opened cryosparc_P1_J123_001_volume_map.mrc as #22, grid size 128,128,128, pixel 3.32, shown at level 0.868, step 1, values float32 > open /Users/haandrew/Downloads/cryosparc_P1_J122_002_volume_map_sharp.mrc Opened cryosparc_P1_J122_002_volume_map_sharp.mrc as #23, grid size 128,128,128, pixel 3.32, shown at level 1.03, step 1, values float32 > open /Users/haandrew/Downloads/cryosparc_P1_J122_002_volume_map.mrc Opened cryosparc_P1_J122_002_volume_map.mrc as #24, grid size 128,128,128, pixel 3.32, shown at level 0.916, step 1, values float32 > open /Users/haandrew/Downloads/cryosparc_P1_J121_001_volume_map.mrc Opened cryosparc_P1_J121_001_volume_map.mrc as #25, grid size 128,128,128, pixel 3.32, shown at level 0.97, step 1, values float32 > open /Users/haandrew/Downloads/cryosparc_P1_J121_001_volume_map_sharp.mrc Opened cryosparc_P1_J121_001_volume_map_sharp.mrc as #26, grid size 128,128,128, pixel 3.32, shown at level 1.13, step 1, values float32 > hide #!16.6 models > hide #!16.5 models > hide #!16.4 models > hide #!16.3 models > hide #!16.2 models > hide #!16.1 models > hide #!16 models > select add #17 2 models selected > select add #18 4 models selected > select add #19 6 models selected > select add #20 8 models selected > select add #21 10 models selected > select add #22 12 models selected > select add #23 14 models selected > select add #24 16 models selected > select add #25 18 models selected > select add #26 20 models selected > ui mousemode right ""rotate selected models"" > view matrix models > #17,0.99574,-0.089546,-0.022173,24.724,0.074812,0.92447,-0.37385,77.669,0.053976,0.3706,0.92722,-76,#18,0.99574,-0.089546,-0.022173,24.724,0.074812,0.92447,-0.37385,77.669,0.053976,0.3706,0.92722,-76,#19,0.99574,-0.089546,-0.022173,24.724,0.074812,0.92447,-0.37385,77.669,0.053976,0.3706,0.92722,-76,#20,0.99574,-0.089546,-0.022173,24.724,0.074812,0.92447,-0.37385,77.669,0.053976,0.3706,0.92722,-76,#21,0.99574,-0.089546,-0.022173,24.724,0.074812,0.92447,-0.37385,77.669,0.053976,0.3706,0.92722,-76,#22,0.99574,-0.089546,-0.022173,24.724,0.074812,0.92447,-0.37385,77.669,0.053976,0.3706,0.92722,-76,#23,0.99574,-0.089546,-0.022173,24.724,0.074812,0.92447,-0.37385,77.669,0.053976,0.3706,0.92722,-76,#24,0.99574,-0.089546,-0.022173,24.724,0.074812,0.92447,-0.37385,77.669,0.053976,0.3706,0.92722,-76,#25,0.99574,-0.089546,-0.022173,24.724,0.074812,0.92447,-0.37385,77.669,0.053976,0.3706,0.92722,-76,#26,0.99574,-0.089546,-0.022173,24.724,0.074812,0.92447,-0.37385,77.669,0.053976,0.3706,0.92722,-76 > view matrix models > #17,0.98267,-0.18522,-0.0073187,44.806,0.12534,0.69302,-0.70994,186.22,0.13656,0.69672,0.70423,-116.67,#18,0.98267,-0.18522,-0.0073187,44.806,0.12534,0.69302,-0.70994,186.22,0.13656,0.69672,0.70423,-116.67,#19,0.98267,-0.18522,-0.0073187,44.806,0.12534,0.69302,-0.70994,186.22,0.13656,0.69672,0.70423,-116.67,#20,0.98267,-0.18522,-0.0073187,44.806,0.12534,0.69302,-0.70994,186.22,0.13656,0.69672,0.70423,-116.67,#21,0.98267,-0.18522,-0.0073187,44.806,0.12534,0.69302,-0.70994,186.22,0.13656,0.69672,0.70423,-116.67,#22,0.98267,-0.18522,-0.0073187,44.806,0.12534,0.69302,-0.70994,186.22,0.13656,0.69672,0.70423,-116.67,#23,0.98267,-0.18522,-0.0073187,44.806,0.12534,0.69302,-0.70994,186.22,0.13656,0.69672,0.70423,-116.67,#24,0.98267,-0.18522,-0.0073187,44.806,0.12534,0.69302,-0.70994,186.22,0.13656,0.69672,0.70423,-116.67,#25,0.98267,-0.18522,-0.0073187,44.806,0.12534,0.69302,-0.70994,186.22,0.13656,0.69672,0.70423,-116.67,#26,0.98267,-0.18522,-0.0073187,44.806,0.12534,0.69302,-0.70994,186.22,0.13656,0.69672,0.70423,-116.67 > view matrix models > #17,0.99981,-0.018101,-0.0075164,5.3917,0.017437,0.9966,-0.080558,13.215,0.008949,0.080412,0.99672,-18.299,#18,0.99981,-0.018101,-0.0075164,5.3917,0.017437,0.9966,-0.080558,13.215,0.008949,0.080412,0.99672,-18.299,#19,0.99981,-0.018101,-0.0075164,5.3917,0.017437,0.9966,-0.080558,13.215,0.008949,0.080412,0.99672,-18.299,#20,0.99981,-0.018101,-0.0075164,5.3917,0.017437,0.9966,-0.080558,13.215,0.008949,0.080412,0.99672,-18.299,#21,0.99981,-0.018101,-0.0075164,5.3917,0.017437,0.9966,-0.080558,13.215,0.008949,0.080412,0.99672,-18.299,#22,0.99981,-0.018101,-0.0075164,5.3917,0.017437,0.9966,-0.080558,13.215,0.008949,0.080412,0.99672,-18.299,#23,0.99981,-0.018101,-0.0075164,5.3917,0.017437,0.9966,-0.080558,13.215,0.008949,0.080412,0.99672,-18.299,#24,0.99981,-0.018101,-0.0075164,5.3917,0.017437,0.9966,-0.080558,13.215,0.008949,0.080412,0.99672,-18.299,#25,0.99981,-0.018101,-0.0075164,5.3917,0.017437,0.9966,-0.080558,13.215,0.008949,0.080412,0.99672,-18.299,#26,0.99981,-0.018101,-0.0075164,5.3917,0.017437,0.9966,-0.080558,13.215,0.008949,0.080412,0.99672,-18.299 > view matrix models > #17,0.99764,-0.065718,-0.019769,18.608,0.057572,0.95824,-0.28012,54.266,0.037353,0.27832,0.95976,-59.143,#18,0.99764,-0.065718,-0.019769,18.608,0.057572,0.95824,-0.28012,54.266,0.037353,0.27832,0.95976,-59.143,#19,0.99764,-0.065718,-0.019769,18.608,0.057572,0.95824,-0.28012,54.266,0.037353,0.27832,0.95976,-59.143,#20,0.99764,-0.065718,-0.019769,18.608,0.057572,0.95824,-0.28012,54.266,0.037353,0.27832,0.95976,-59.143,#21,0.99764,-0.065718,-0.019769,18.608,0.057572,0.95824,-0.28012,54.266,0.037353,0.27832,0.95976,-59.143,#22,0.99764,-0.065718,-0.019769,18.608,0.057572,0.95824,-0.28012,54.266,0.037353,0.27832,0.95976,-59.143,#23,0.99764,-0.065718,-0.019769,18.608,0.057572,0.95824,-0.28012,54.266,0.037353,0.27832,0.95976,-59.143,#24,0.99764,-0.065718,-0.019769,18.608,0.057572,0.95824,-0.28012,54.266,0.037353,0.27832,0.95976,-59.143,#25,0.99764,-0.065718,-0.019769,18.608,0.057572,0.95824,-0.28012,54.266,0.037353,0.27832,0.95976,-59.143,#26,0.99764,-0.065718,-0.019769,18.608,0.057572,0.95824,-0.28012,54.266,0.037353,0.27832,0.95976,-59.143 > view matrix models > #17,1,-0.00095368,-0.00043935,0.20138,0.00095177,0.99999,-0.0043156,0.19394,0.00044346,0.0043151,0.99999,-0.82227,#18,1,-0.00095368,-0.00043935,0.20138,0.00095177,0.99999,-0.0043156,0.19394,0.00044346,0.0043151,0.99999,-0.82227,#19,1,-0.00095368,-0.00043935,0.20138,0.00095177,0.99999,-0.0043156,0.19394,0.00044346,0.0043151,0.99999,-0.82227,#20,1,-0.00095368,-0.00043935,0.20138,0.00095177,0.99999,-0.0043156,0.19394,0.00044346,0.0043151,0.99999,-0.82227,#21,1,-0.00095368,-0.00043935,0.20138,0.00095177,0.99999,-0.0043156,0.19394,0.00044346,0.0043151,0.99999,-0.82227,#22,1,-0.00095368,-0.00043935,0.20138,0.00095177,0.99999,-0.0043156,0.19394,0.00044346,0.0043151,0.99999,-0.82227,#23,1,-0.00095368,-0.00043935,0.20138,0.00095177,0.99999,-0.0043156,0.19394,0.00044346,0.0043151,0.99999,-0.82227,#24,1,-0.00095368,-0.00043935,0.20138,0.00095177,0.99999,-0.0043156,0.19394,0.00044346,0.0043151,0.99999,-0.82227,#25,1,-0.00095368,-0.00043935,0.20138,0.00095177,0.99999,-0.0043156,0.19394,0.00044346,0.0043151,0.99999,-0.82227,#26,1,-0.00095368,-0.00043935,0.20138,0.00095177,0.99999,-0.0043156,0.19394,0.00044346,0.0043151,0.99999,-0.82227 > ui mousemode right ""translate selected models"" > view matrix models > #17,1,-0.00095368,-0.00043935,-64.716,0.00095177,0.99999,-0.0043156,341.09,0.00044346,0.0043151,0.99999,451.16,#18,1,-0.00095368,-0.00043935,-64.716,0.00095177,0.99999,-0.0043156,341.09,0.00044346,0.0043151,0.99999,451.16,#19,1,-0.00095368,-0.00043935,-64.716,0.00095177,0.99999,-0.0043156,341.09,0.00044346,0.0043151,0.99999,451.16,#20,1,-0.00095368,-0.00043935,-64.716,0.00095177,0.99999,-0.0043156,341.09,0.00044346,0.0043151,0.99999,451.16,#21,1,-0.00095368,-0.00043935,-64.716,0.00095177,0.99999,-0.0043156,341.09,0.00044346,0.0043151,0.99999,451.16,#22,1,-0.00095368,-0.00043935,-64.716,0.00095177,0.99999,-0.0043156,341.09,0.00044346,0.0043151,0.99999,451.16,#23,1,-0.00095368,-0.00043935,-64.716,0.00095177,0.99999,-0.0043156,341.09,0.00044346,0.0043151,0.99999,451.16,#24,1,-0.00095368,-0.00043935,-64.716,0.00095177,0.99999,-0.0043156,341.09,0.00044346,0.0043151,0.99999,451.16,#25,1,-0.00095368,-0.00043935,-64.716,0.00095177,0.99999,-0.0043156,341.09,0.00044346,0.0043151,0.99999,451.16,#26,1,-0.00095368,-0.00043935,-64.716,0.00095177,0.99999,-0.0043156,341.09,0.00044346,0.0043151,0.99999,451.16 > view matrix models > #17,1,-0.00095368,-0.00043935,-365.11,0.00095177,0.99999,-0.0043156,367.08,0.00044346,0.0043151,0.99999,319.04,#18,1,-0.00095368,-0.00043935,-365.11,0.00095177,0.99999,-0.0043156,367.08,0.00044346,0.0043151,0.99999,319.04,#19,1,-0.00095368,-0.00043935,-365.11,0.00095177,0.99999,-0.0043156,367.08,0.00044346,0.0043151,0.99999,319.04,#20,1,-0.00095368,-0.00043935,-365.11,0.00095177,0.99999,-0.0043156,367.08,0.00044346,0.0043151,0.99999,319.04,#21,1,-0.00095368,-0.00043935,-365.11,0.00095177,0.99999,-0.0043156,367.08,0.00044346,0.0043151,0.99999,319.04,#22,1,-0.00095368,-0.00043935,-365.11,0.00095177,0.99999,-0.0043156,367.08,0.00044346,0.0043151,0.99999,319.04,#23,1,-0.00095368,-0.00043935,-365.11,0.00095177,0.99999,-0.0043156,367.08,0.00044346,0.0043151,0.99999,319.04,#24,1,-0.00095368,-0.00043935,-365.11,0.00095177,0.99999,-0.0043156,367.08,0.00044346,0.0043151,0.99999,319.04,#25,1,-0.00095368,-0.00043935,-365.11,0.00095177,0.99999,-0.0043156,367.08,0.00044346,0.0043151,0.99999,319.04,#26,1,-0.00095368,-0.00043935,-365.11,0.00095177,0.99999,-0.0043156,367.08,0.00044346,0.0043151,0.99999,319.04 > ui mousemode right ""rotate selected models"" > view matrix models > #17,-0.48948,0.47528,-0.73111,3.4981,-0.87199,-0.26059,0.41439,735.43,0.0064326,0.84035,0.542,234.87,#18,-0.48948,0.47528,-0.73111,3.4981,-0.87199,-0.26059,0.41439,735.43,0.0064326,0.84035,0.542,234.87,#19,-0.48948,0.47528,-0.73111,3.4981,-0.87199,-0.26059,0.41439,735.43,0.0064326,0.84035,0.542,234.87,#20,-0.48948,0.47528,-0.73111,3.4981,-0.87199,-0.26059,0.41439,735.43,0.0064326,0.84035,0.542,234.87,#21,-0.48948,0.47528,-0.73111,3.4981,-0.87199,-0.26059,0.41439,735.43,0.0064326,0.84035,0.542,234.87,#22,-0.48948,0.47528,-0.73111,3.4981,-0.87199,-0.26059,0.41439,735.43,0.0064326,0.84035,0.542,234.87,#23,-0.48948,0.47528,-0.73111,3.4981,-0.87199,-0.26059,0.41439,735.43,0.0064326,0.84035,0.542,234.87,#24,-0.48948,0.47528,-0.73111,3.4981,-0.87199,-0.26059,0.41439,735.43,0.0064326,0.84035,0.542,234.87,#25,-0.48948,0.47528,-0.73111,3.4981,-0.87199,-0.26059,0.41439,735.43,0.0064326,0.84035,0.542,234.87,#26,-0.48948,0.47528,-0.73111,3.4981,-0.87199,-0.26059,0.41439,735.43,0.0064326,0.84035,0.542,234.87 > view matrix models > #17,-0.97283,-0.0066229,-0.23144,105.34,-0.15909,-0.70715,0.68893,621.22,-0.16823,0.70703,0.68688,270.55,#18,-0.97283,-0.0066229,-0.23144,105.34,-0.15909,-0.70715,0.68893,621.22,-0.16823,0.70703,0.68688,270.55,#19,-0.97283,-0.0066229,-0.23144,105.34,-0.15909,-0.70715,0.68893,621.22,-0.16823,0.70703,0.68688,270.55,#20,-0.97283,-0.0066229,-0.23144,105.34,-0.15909,-0.70715,0.68893,621.22,-0.16823,0.70703,0.68688,270.55,#21,-0.97283,-0.0066229,-0.23144,105.34,-0.15909,-0.70715,0.68893,621.22,-0.16823,0.70703,0.68688,270.55,#22,-0.97283,-0.0066229,-0.23144,105.34,-0.15909,-0.70715,0.68893,621.22,-0.16823,0.70703,0.68688,270.55,#23,-0.97283,-0.0066229,-0.23144,105.34,-0.15909,-0.70715,0.68893,621.22,-0.16823,0.70703,0.68688,270.55,#24,-0.97283,-0.0066229,-0.23144,105.34,-0.15909,-0.70715,0.68893,621.22,-0.16823,0.70703,0.68688,270.55,#25,-0.97283,-0.0066229,-0.23144,105.34,-0.15909,-0.70715,0.68893,621.22,-0.16823,0.70703,0.68688,270.55,#26,-0.97283,-0.0066229,-0.23144,105.34,-0.15909,-0.70715,0.68893,621.22,-0.16823,0.70703,0.68688,270.55 > ui mousemode right ""translate selected models"" > view matrix models > #17,-0.97283,-0.0066229,-0.23144,36.511,-0.15909,-0.70715,0.68893,429.96,-0.16823,0.70703,0.68688,544.99,#18,-0.97283,-0.0066229,-0.23144,36.511,-0.15909,-0.70715,0.68893,429.96,-0.16823,0.70703,0.68688,544.99,#19,-0.97283,-0.0066229,-0.23144,36.511,-0.15909,-0.70715,0.68893,429.96,-0.16823,0.70703,0.68688,544.99,#20,-0.97283,-0.0066229,-0.23144,36.511,-0.15909,-0.70715,0.68893,429.96,-0.16823,0.70703,0.68688,544.99,#21,-0.97283,-0.0066229,-0.23144,36.511,-0.15909,-0.70715,0.68893,429.96,-0.16823,0.70703,0.68688,544.99,#22,-0.97283,-0.0066229,-0.23144,36.511,-0.15909,-0.70715,0.68893,429.96,-0.16823,0.70703,0.68688,544.99,#23,-0.97283,-0.0066229,-0.23144,36.511,-0.15909,-0.70715,0.68893,429.96,-0.16823,0.70703,0.68688,544.99,#24,-0.97283,-0.0066229,-0.23144,36.511,-0.15909,-0.70715,0.68893,429.96,-0.16823,0.70703,0.68688,544.99,#25,-0.97283,-0.0066229,-0.23144,36.511,-0.15909,-0.70715,0.68893,429.96,-0.16823,0.70703,0.68688,544.99,#26,-0.97283,-0.0066229,-0.23144,36.511,-0.15909,-0.70715,0.68893,429.96,-0.16823,0.70703,0.68688,544.99 > view matrix models > #17,-0.97283,-0.0066229,-0.23144,-9.3426,-0.15909,-0.70715,0.68893,441.91,-0.16823,0.70703,0.68688,533.22,#18,-0.97283,-0.0066229,-0.23144,-9.3426,-0.15909,-0.70715,0.68893,441.91,-0.16823,0.70703,0.68688,533.22,#19,-0.97283,-0.0066229,-0.23144,-9.3426,-0.15909,-0.70715,0.68893,441.91,-0.16823,0.70703,0.68688,533.22,#20,-0.97283,-0.0066229,-0.23144,-9.3426,-0.15909,-0.70715,0.68893,441.91,-0.16823,0.70703,0.68688,533.22,#21,-0.97283,-0.0066229,-0.23144,-9.3426,-0.15909,-0.70715,0.68893,441.91,-0.16823,0.70703,0.68688,533.22,#22,-0.97283,-0.0066229,-0.23144,-9.3426,-0.15909,-0.70715,0.68893,441.91,-0.16823,0.70703,0.68688,533.22,#23,-0.97283,-0.0066229,-0.23144,-9.3426,-0.15909,-0.70715,0.68893,441.91,-0.16823,0.70703,0.68688,533.22,#24,-0.97283,-0.0066229,-0.23144,-9.3426,-0.15909,-0.70715,0.68893,441.91,-0.16823,0.70703,0.68688,533.22,#25,-0.97283,-0.0066229,-0.23144,-9.3426,-0.15909,-0.70715,0.68893,441.91,-0.16823,0.70703,0.68688,533.22,#26,-0.97283,-0.0066229,-0.23144,-9.3426,-0.15909,-0.70715,0.68893,441.91,-0.16823,0.70703,0.68688,533.22 > fitmap #17 inMap #1 Fit map cryosparc_P1_J125_001_volume_map_sharp.mrc in map cryosparc_P3_J50_002_volume_map_sharp.mrc using 20969 points correlation = 0.9436, correlation about mean = 0.3712, overlap = 4.794e+04 steps = 112, shift = 11.6, angle = 16.9 degrees Position of cryosparc_P1_J125_001_volume_map_sharp.mrc (#17) relative to cryosparc_P3_J50_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation -0.97473724 0.22318025 0.00882537 372.40183303 0.22334198 0.97349942 0.04916529 -54.48498320 0.00238123 0.04989432 -0.99875166 409.83031245 Axis 0.11237811 0.99335273 0.02493025 Axis point 189.61746377 0.00000000 205.29466945 Rotation angle (degrees) 179.81415339 Shift along axis -2.05582236 > fitmap #18 inMap #1 Fit map cryosparc_P1_J125_001_volume_map.mrc in map cryosparc_P3_J50_002_volume_map_sharp.mrc using 20953 points correlation = 0.9437, correlation about mean = 0.3519, overlap = 3.992e+04 steps = 112, shift = 11.4, angle = 16.9 degrees Position of cryosparc_P1_J125_001_volume_map.mrc (#18) relative to cryosparc_P3_J50_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation -0.97474890 0.22312942 0.00882287 372.41512470 0.22329174 0.97352491 0.04888804 -54.44207992 0.00231908 0.04962363 -0.99876529 409.85155947 Axis 0.11235195 0.99335914 0.02479219 Axis point 189.62405682 0.00000000 205.29814212 Rotation angle (degrees) 179.81243421 Shift along axis -2.07785457 > fitmap #19 inMap #1 Fit map cryosparc_P1_J124_001_volume_map_sharp.mrc in map cryosparc_P3_J50_002_volume_map_sharp.mrc using 20960 points correlation = 0.9446, correlation about mean = 0.3793, overlap = 5.003e+04 steps = 116, shift = 11.8, angle = 16.9 degrees Position of cryosparc_P1_J124_001_volume_map_sharp.mrc (#19) relative to cryosparc_P3_J50_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation -0.97470685 0.22329345 0.00930525 372.32314802 0.22347991 0.97349216 0.04867993 -54.33225066 0.00181133 0.04952820 -0.99877108 410.02364850 Axis 0.11244159 0.99335090 0.02471608 Axis point 189.62591492 0.00000000 205.33409228 Rotation angle (degrees) 179.78387742 Shift along axis -1.97220587 > fitmap #20 inMap #1 Fit map cryosparc_P1_J124_001_volume_map.mrc in map cryosparc_P3_J50_002_volume_map_sharp.mrc using 20947 points correlation = 0.9462, correlation about mean = 0.3696, overlap = 4.053e+04 steps = 112, shift = 11.8, angle = 16.9 degrees Position of cryosparc_P1_J124_001_volume_map.mrc (#20) relative to cryosparc_P3_J50_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation -0.97467049 0.22345442 0.00924890 372.30483215 0.22363779 0.97345306 0.04873675 -54.37554808 0.00188707 0.04957068 -0.99876883 409.96318277 Axis 0.11252294 0.99334106 0.02474131 Axis point 189.61455386 0.00000000 205.31133885 Rotation angle (degrees) 179.78768492 Shift along axis -1.97760389 > fitmap #21 inMap #1 Fit map cryosparc_P1_J123_001_volume_map_sharp.mrc in map cryosparc_P3_J50_002_volume_map_sharp.mrc using 20963 points correlation = 0.9209, correlation about mean = 0.2851, overlap = 3.745e+04 steps = 100, shift = 11.7, angle = 16.9 degrees Position of cryosparc_P1_J123_001_volume_map_sharp.mrc (#21) relative to cryosparc_P3_J50_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation -0.97475528 0.22307796 0.00940001 372.49506038 0.22326526 0.97343319 0.05079800 -54.72356346 0.00218163 0.05161431 -0.99866470 409.47423623 Axis 0.11233499 0.99333606 0.02577453 Axis point 189.71632473 0.00000000 205.10625789 Rotation angle (degrees) 179.79182095 Shift along axis -1.96065387 > fitmap #22 inMap #1 Fit map cryosparc_P1_J123_001_volume_map.mrc in map cryosparc_P3_J50_002_volume_map_sharp.mrc using 20968 points correlation = 0.916, correlation about mean = 0.2616, overlap = 3.287e+04 steps = 92, shift = 11.7, angle = 16.9 degrees Position of cryosparc_P1_J123_001_volume_map.mrc (#22) relative to cryosparc_P3_J50_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation -0.97474433 0.22313996 0.00905743 372.54938107 0.22330958 0.97342454 0.05076901 -54.75965753 0.00251187 0.05150942 -0.99866934 409.39735460 Axis 0.11236195 0.99333388 0.02574084 Axis point 189.71130805 0.00000000 205.09907729 Rotation angle (degrees) 179.81122498 Shift along axis -1.99601695 > fitmap #23 inMap #1 Fit map cryosparc_P1_J122_002_volume_map_sharp.mrc in map cryosparc_P3_J50_002_volume_map_sharp.mrc using 20963 points correlation = 0.9267, correlation about mean = 0.2962, overlap = 4.11e+04 steps = 116, shift = 11.7, angle = 16.8 degrees Position of cryosparc_P1_J122_002_volume_map_sharp.mrc (#23) relative to cryosparc_P3_J50_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation -0.97494510 0.22230195 0.00799320 372.70121549 0.22242457 0.97372917 0.04877297 -54.23436251 0.00305911 0.04932885 -0.99877790 409.90832512 Axis 0.11191961 0.99341055 0.02468760 Axis point 189.66189595 0.00000000 205.39499069 Rotation angle (degrees) 179.85771104 Shift along axis -2.04475959 > fitmap #24 inMap #1 Fit map cryosparc_P1_J122_002_volume_map.mrc in map cryosparc_P3_J50_002_volume_map_sharp.mrc using 20967 points correlation = 0.9237, correlation about mean = 0.2747, overlap = 3.541e+04 steps = 112, shift = 11.6, angle = 16.8 degrees Position of cryosparc_P1_J122_002_volume_map.mrc (#24) relative to cryosparc_P3_J50_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation -0.97491815 0.22242980 0.00771786 372.71800864 0.22253899 0.97370751 0.04868334 -54.21108610 0.00331369 0.04917980 -0.99878444 409.89485222 Axis 0.11198121 0.99340510 0.02462759 Axis point 189.64315659 0.00000000 205.41135245 Rotation angle (degrees) 179.87299185 Shift along axis -2.02143368 > fitmap #25 inMap #1 Fit map cryosparc_P1_J121_001_volume_map.mrc in map cryosparc_P3_J50_002_volume_map_sharp.mrc using 20960 points correlation = 0.9295, correlation about mean = 0.3342, overlap = 3.96e+04 steps = 100, shift = 12.2, angle = 17.2 degrees Position of cryosparc_P1_J121_001_volume_map.mrc (#25) relative to cryosparc_P3_J50_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation -0.97391183 0.22651657 0.01363771 370.37768813 0.22691899 0.97261478 0.05028159 -55.33106904 -0.00187463 0.05206449 -0.99864196 410.22573067 Axis 0.11414490 0.99312999 0.02576373 Axis point 189.17517566 0.00000000 205.10193122 Rotation angle (degrees) 179.55252552 Shift along axis -2.10527514 > fitmap #26 inMap #1 Fit map cryosparc_P1_J121_001_volume_map_sharp.mrc in map cryosparc_P3_J50_002_volume_map_sharp.mrc using 20966 points correlation = 0.9273, correlation about mean = 0.3487, overlap = 4.763e+04 steps = 100, shift = 12.2, angle = 17.2 degrees Position of cryosparc_P1_J121_001_volume_map_sharp.mrc (#26) relative to cryosparc_P3_J50_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation -0.97381510 0.22691539 0.01391205 370.22772018 0.22733192 0.97250985 0.05044581 -55.44775202 -0.00208268 0.05228755 -0.99862989 410.17642890 Axis 0.11435239 0.99310356 0.02586194 Axis point 189.13780372 0.00000000 205.05915510 Rotation angle (degrees) 179.53859786 Shift along axis -2.12097830 > select subtract #17 18 models selected > select subtract #18 16 models selected > select subtract #19 14 models selected > select subtract #20 12 models selected > select subtract #21 10 models selected > select subtract #22 8 models selected > select subtract #23 6 models selected > select subtract #24 4 models selected > select subtract #26 2 models selected > select subtract #25 Nothing selected > hide #!1 models > volume #26 level 0.636 > volume #25 level 0.4349 > volume #24 level 0.3978 > surface dust #17 size 33.2 > surface dust #18 size 33.2 > surface dust #19 size 33.2 > surface dust #20 size 33.2 > surface dust #21 size 33.2 > surface dust #22 size 33.2 > surface dust #23 size 33.2 > surface dust #24 size 33.2 > surface dust #25 size 33.2 > surface dust #26 size 33.2 > volume #23 level 0.378 > volume #22 level 0.3412 > volume #21 level 0.3913 > volume #20 level 0.3613 > volume #19 level 0.406 > volume #18 level 0.2841 > volume #17 level 0.6173 > volume #16.6 level 0.2311 > hide #!16.6 models > hide #!18 models > hide #!20 models > hide #!22 models > hide #!24 models > hide #!25 models > show #!18 models > hide #!17 models > hide #!19 models > show #!20 models > hide #!21 models > show #!22 models > hide #!23 models > show #!24 models > hide #!26 models > show #!25 models > show #!1 models > hide #!1 models > volume resample #18 onGrid #25 Opened cryosparc_P1_J125_001_volume_map.mrc resampled as #27, grid size 128,128,128, pixel 3.32, shown at step 1, values float32 > volume resample #20 onGrid #25 Opened cryosparc_P1_J124_001_volume_map.mrc resampled as #28, grid size 128,128,128, pixel 3.32, shown at step 1, values float32 > volume resample #22 onGrid #25 Opened cryosparc_P1_J123_001_volume_map.mrc resampled as #29, grid size 128,128,128, pixel 3.32, shown at step 1, values float32 > volume resample #24 onGrid #25 Opened cryosparc_P1_J122_002_volume_map.mrc resampled as #30, grid size 128,128,128, pixel 3.32, shown at step 1, values float32 > volume morph #25,27-30 Opened morph as #31, grid size 128,128,128, pixel 3.32, shown at step 1, values float32 > surface dust #31 size 33.2 > show #!16.1 models > volume #16.6 level 0.1812 > volume #16.5 level 0.1543 > volume #26 color #919191 > volume #27 color #919191 > select add #16.6 3 models selected > select add #17 5 models selected > select add #18 7 models selected > select add #19 9 models selected > select add #20 11 models selected > select add #21 13 models selected > select add #22 15 models selected > select add #25 17 models selected > select add #24 19 models selected > select add #23 21 models selected > select add #26 23 models selected > select add #27 25 models selected > select add #28 27 models selected > select add #29 29 models selected > select add #30 31 models selected > select add #31 34 models selected > color #31.1#16.6.1 gray > select subtract #16.6 31 models selected > select subtract #17 29 models selected > select subtract #18 27 models selected > select subtract #19 25 models selected > select subtract #20 23 models selected > select subtract #21 21 models selected > select subtract #22 19 models selected > select subtract #23 17 models selected > select subtract #24 15 models selected > select subtract #25 13 models selected > select subtract #26 11 models selected > select subtract #27 9 models selected > select subtract #28 7 models selected > select subtract #29 5 models selected > select subtract #30 3 models selected > select subtract #31 Nothing selected > volume #16.1 level 0.2264 > volume #16.2 level 0.1574 > volume #16.3 level 0.1808 > volume #16.4 level 0.1634 > volume #16.6 level 0.1084 > volume #16.6 color #0096ff > volume #16.6 level 0.1506 > volume #16.5 level 0.322 > hide #!16.6 models > hide #!16.5 models > hide #!16.4 models > hide #!16.3 models > hide #!16.2 models > hide #!16.1 models > hide #!16 models > show #!16.1 models > hide #!16 models > hide #!31 models > hide #!16.1 models > show #!16.2 models > hide #!16.2 models > show #!16.1 models > show #!1 models > volume resample #16.1 onGrid #16.6 Opened S2c.map resampled as #32, grid size 400,400,400, pixel 1.32, shown at step 1, values float32 > volume resample #16.2 onGrid #16.6 Opened S2d.map resampled as #33, grid size 400,400,400, pixel 1.32, shown at step 1, values float32 > volume resample #16.3 onGrid #16.6 Opened S2e.map resampled as #34, grid size 400,400,400, pixel 1.32, shown at step 1, values float32 > volume resample #16.4 onGrid #16.6 Opened S2f.map resampled as #35, grid size 400,400,400, pixel 1.32, shown at step 1, values float32 > volume resample #16.5 onGrid #16.6 Opened S2b.map resampled as #36, grid size 400,400,400, pixel 1.32, shown at step 1, values float32 > volume morph #16.6,32-36 volume morph requires 2 or more volumes, got 1 > volume morph #32-36,16.6 volume morph requires 2 or more volumes, got 1 > hide #!16 models > show #!16.1 models > ui tool show ""Side View"" > hide #!32 models > hide #!33 models > hide #!34 models > hide #!35 models > hide #!36 models > hide #!16.1 models > show #!16.2 models > show #!16.3 models > hide #!16.2 models > show #!16.4 models > hide #!16.3 models > show #!16.5 models > hide #!16.4 models > show #!16.6 models > hide #!16.5 models > hide #!16.6 models > show #!16.1 models ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.8 (2024-06-10) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX The cached device pixel ratio value was stale on window expose. Please file a QTBUG which explains how to reproduce. OpenGL version: 4.1 Metal - 90.5 OpenGL renderer: Apple M1 OpenGL vendor: Apple Python: 3.11.4 Locale: en_US.UTF-8 Qt version: PyQt6 6.6.1, Qt 6.6.1 Qt runtime version: 6.6.3 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro17,1 Model Number: Z11D000L9D/A Chip: Unknown Total Number of Cores: 8 (4 Performance and 4 Efficiency) Memory: 16 GB System Firmware Version: 13822.81.10 OS Loader Version: 13822.81.10 Software: System Software Overview: System Version: macOS 26.3 (25D125) Kernel Version: Darwin 25.3.0 Time since boot: 47 days, 17 hours, 2 minutes Graphics/Displays: Apple M1: Chipset Model: Apple M1 Type: GPU Bus: Built-In Total Number of Cores: 8 Vendor: Apple (0x106b) Metal Support: Metal 4 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2560 x 1600 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal DELL P2722H: Resolution: 1920 x 1080 (1080p FHD - Full High Definition) UI Looks like: 1920 x 1080 @ 60.00Hz Mirror: Off Online: Yes Installed Packages: alabaster: 0.7.16 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 2.4.1 Babel: 2.15.0 beautifulsoup4: 4.12.3 blockdiag: 3.0.0 blosc2: 2.0.0 build: 1.2.1 certifi: 2023.11.17 cftime: 1.6.4 charset-normalizer: 3.3.2 ChimeraX-AddCharge: 1.5.17 ChimeraX-AddH: 2.2.6 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.5 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.12.7 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.1.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.57.1 ChimeraX-AtomicLibrary: 14.0.6 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.4.6 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.12.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.7 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.4 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.6 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.8 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.3 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2.4 ChimeraX-DiffPlot: 1.0 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.3 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-Label: 1.1.10 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.1.6 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.2 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-maskChains: 1.4 ChimeraX-MatchMaker: 2.1.3 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.7.1 ChimeraX-MedicalToolbar: 1.0.3 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.14.1 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.17 ChimeraX-ModelPanel: 1.5 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.13.5 ChimeraX-PDB: 2.7.5 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.1 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.4.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.2 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.2 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.0.15 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.11.2 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.16.5 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.39.1 ChimeraX-uniprot: 2.3 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.4.3 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.4 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.2 contourpy: 1.2.1 cxservices: 1.2.2 cycler: 0.12.1 Cython: 3.0.10 debugpy: 1.8.1 decorator: 5.1.1 docutils: 0.20.1 executing: 2.0.1 filelock: 3.13.4 fonttools: 4.53.0 funcparserlib: 2.0.0a0 glfw: 2.7.0 grako: 3.16.5 h5py: 3.11.0 html2text: 2024.2.26 idna: 3.7 ihm: 1.0 imagecodecs: 2024.1.1 imagesize: 1.4.1 ipykernel: 6.29.2 ipython: 8.21.0 ipywidgets: 8.1.3 jedi: 0.19.1 jinja2: 3.1.4 jupyter-client: 8.6.0 jupyter-core: 5.7.2 jupyterlab-widgets: 3.0.11 kiwisolver: 1.4.5 line-profiler: 4.1.2 lxml: 5.2.1 lz4: 4.3.3 MarkupSafe: 2.1.5 matplotlib: 3.8.4 matplotlib-inline: 0.1.7 msgpack: 1.0.8 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.10.0 numpy: 1.26.4 openvr: 1.26.701 packaging: 23.2 ParmEd: 4.2.2 parso: 0.8.4 pep517: 0.13.1 pexpect: 4.9.0 pillow: 10.3.0 pip: 24.0 pkginfo: 1.10.0 platformdirs: 4.2.2 prompt-toolkit: 3.0.47 psutil: 5.9.8 ptyprocess: 0.7.0 pure-eval: 0.2.2 py-cpuinfo: 9.0.0 pycollada: 0.8 pydicom: 2.4.4 pygments: 2.17.2 pynmrstar: 3.3.4 pynrrd: 1.0.0 PyOpenGL: 3.1.7 PyOpenGL-accelerate: 3.1.7 pyopenxr: 1.0.3401 pyparsing: 3.1.2 pyproject-hooks: 1.1.0 PyQt6-commercial: 6.6.1 PyQt6-Qt6: 6.6.3 PyQt6-sip: 13.6.0 PyQt6-WebEngine-commercial: 6.6.0 PyQt6-WebEngine-Qt6: 6.6.3 python-dateutil: 2.9.0.post0 pytz: 2024.1 pyzmq: 26.0.3 qtconsole: 5.5.1 QtPy: 2.4.1 RandomWords: 0.4.0 requests: 2.31.0 scipy: 1.13.0 setuptools: 69.5.1 setuptools-scm: 8.0.4 sfftk-rw: 0.8.1 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.5 sphinx: 7.2.6 sphinx-autodoc-typehints: 2.0.1 sphinxcontrib-applehelp: 1.0.8 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.6 sphinxcontrib-htmlhelp: 2.0.5 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.7 sphinxcontrib-serializinghtml: 1.1.10 stack-data: 0.6.3 superqt: 0.6.3 tables: 3.8.0 tcia-utils: 1.5.1 tifffile: 2024.1.30 tinyarray: 1.2.4 tornado: 6.4.1 traitlets: 5.14.2 typing-extensions: 4.12.2 tzdata: 2024.1 urllib3: 2.2.1 wcwidth: 0.2.13 webcolors: 1.13 wheel: 0.43.0 wheel-filename: 1.4.1 widgetsnbextension: 4.0.11 }}} " defect closed normal Window Toolkit duplicate Eric Pettersen all ChimeraX