id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 20453 glClear: invalid framebuffer operation on statusbar expose gage.leighton@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-26.5-arm64-arm-64bit ChimeraX Version: 1.11.1 (2026-01-23 05:51:34 UTC) Description Try to install ISOLDE Log: UCSF ChimeraX version: 1.11.1 (2026-01-23) © 2016-2025 Regents of the University of California. All rights reserved. > open /Users/leightongo/Desktop/40c7.cxs Log from Tue Dec 9 10:35:55 2025 Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 1.9 (2024-12-11) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Users/leightongo/Desktop/40c7_complex.pdb format pdb Chain information for 40c7_complex.pdb #1 --- Chain | Description A E M S | No description available B F N T | No description available C H P V | No description available D G O U | No description available 40 atoms have alternate locations. Control/examine alternate locations with Altloc Explorer [start tool...] or the altlocs command. > select add #1 36621 atoms, 37042 bonds, 2448 residues, 1 model selected > hide sel atoms > show sel cartoons > select subtract #1 Nothing selected > combine #1 [Repeated 2 time(s)] > hide #2 models > hide #3 models > hide #4 models > ui mousemode right select Drag select of 895 residues > select up 15371 atoms, 15545 bonds, 1024 residues, 1 model selected > select up 18311 atoms, 18521 bonds, 1224 residues, 1 model selected > select up 36621 atoms, 37042 bonds, 2448 residues, 1 model selected > select down 18311 atoms, 18521 bonds, 1224 residues, 1 model selected > delete sel Drag select of 477 residues > select up 8015 atoms, 8103 bonds, 536 residues, 1 model selected > select up 9155 atoms, 9261 bonds, 612 residues, 1 model selected > select up 18310 atoms, 18521 bonds, 1224 residues, 1 model selected > select down 9155 atoms, 9261 bonds, 612 residues, 1 model selected > delete sel > hide #1 models > show #2 models Drag select of 155 residues > select up 3701 atoms, 3742 bonds, 254 residues, 1 model selected > select up 8373 atoms, 8473 bonds, 564 residues, 1 model selected > select up 36621 atoms, 37042 bonds, 2448 residues, 1 model selected > select down 8373 atoms, 8473 bonds, 564 residues, 1 model selected > delete sel Drag select of 28 residues > select up 680 atoms, 684 bonds, 41 residues, 1 model selected > select up 782 atoms, 787 bonds, 48 residues, 1 model selected > select up 28248 atoms, 28569 bonds, 1884 residues, 1 model selected > select down 782 atoms, 787 bonds, 48 residues, 1 model selected > combine #1 > close #5 > delete sel Drag select of 122 residues > select up 3323 atoms, 3356 bonds, 215 residues, 1 model selected > select up 7433 atoms, 7519 bonds, 492 residues, 1 model selected > select up 27466 atoms, 27782 bonds, 1836 residues, 1 model selected > select down 7433 atoms, 7519 bonds, 492 residues, 1 model selected > delete sel Drag select of 51 residues > select up 1187 atoms, 1201 bonds, 84 residues, 1 model selected > select up 1722 atoms, 1742 bonds, 120 residues, 1 model selected > select up 20033 atoms, 20263 bonds, 1344 residues, 1 model selected > select down 1722 atoms, 1742 bonds, 120 residues, 1 model selected > delete sel > combine #2 Drag select of 630 residues > select up 14040 atoms, 14186 bonds, 936 residues, 2 models selected > select up 18312 atoms, 18522 bonds, 1224 residues, 2 models selected > select up 36622 atoms, 37042 bonds, 2448 residues, 2 models selected > select down 18312 atoms, 18522 bonds, 1224 residues, 2 models selected > delete sel Undo failed, probably because structures have been modified. > hide #2 models > show #2 models > hide #5 models > show #5 models > close #5 > show #1 models > hide #1 models > hide #2 models > show #3 models Drag select of 634 residues > select up 10695 atoms, 10812 bonds, 719 residues, 1 model selected > select up 14235 atoms, 14399 bonds, 952 residues, 1 model selected > select up 36621 atoms, 37042 bonds, 2448 residues, 1 model selected > select down 14235 atoms, 14399 bonds, 952 residues, 1 model selected > delete sel Drag select of 816 residues > select up 12984 atoms, 13132 bonds, 868 residues, 1 model selected > select up 13231 atoms, 13382 bonds, 884 residues, 1 model selected > select up 22386 atoms, 22643 bonds, 1496 residues, 1 model selected > select down 13231 atoms, 13382 bonds, 884 residues, 1 model selected > delete sel > hide #3 models > show #2 models > show #1 models > show #3 models > hide #3 models > hide #2 models > hide #1 models > show #4 models Drag select of 145 residues > select up 3620 atoms, 3658 bonds, 239 residues, 1 model selected > select up 7433 atoms, 7519 bonds, 492 residues, 1 model selected > select up 36621 atoms, 37042 bonds, 2448 residues, 1 model selected > select down 7433 atoms, 7519 bonds, 492 residues, 1 model selected > delete sel Drag select of 510 residues > select up 8946 atoms, 9045 bonds, 602 residues, 1 model selected > select up 11659 atoms, 11789 bonds, 780 residues, 1 model selected Drag select of 182 residues > select up 4213 atoms, 4258 bonds, 280 residues, 1 model selected > select up 9155 atoms, 9260 bonds, 612 residues, 1 model selected > select up 29188 atoms, 29523 bonds, 1956 residues, 1 model selected > select down 9155 atoms, 9260 bonds, 612 residues, 1 model selected > delete sel Drag select of 87 residues > select up 1601 atoms, 1619 bonds, 109 residues, 1 model selected > select up 1722 atoms, 1742 bonds, 120 residues, 1 model selected > select up 20033 atoms, 20263 bonds, 1344 residues, 1 model selected > select down 1722 atoms, 1742 bonds, 120 residues, 1 model selected > delete sel Drag select of 218 residues > select up 5227 atoms, 5282 bonds, 351 residues, 1 model selected > select up 9155 atoms, 9260 bonds, 612 residues, 1 model selected > select up 18311 atoms, 18521 bonds, 1224 residues, 1 model selected > select down 9155 atoms, 9260 bonds, 612 residues, 1 model selected > delete sel > show #3 models > show #2 models > show #1 models > color #1 #ff9300ff > color #2 #0433ffff > color #3 #00f900ff > combine #1-4 > hide #4 models > hide #3 models > hide #2 models > hide #1 models > hide #5 models > show #5 models > hide #5 models > show #4 models > show #3 models > show #2 models > show #1 models > mmaker #1 to #2 Computing secondary structure [Repeated 1 time(s)] Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker copy of 40c7_complex.pdb, chain N (#2) with 40c7_complex.pdb, chain B (#1), sequence alignment score = 1044.6 RMSD between 220 pruned atom pairs is 0.452 angstroms; (across all 220 pairs: 0.452) > mmaker #3 to #2 Computing secondary structure [Repeated 1 time(s)] Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker copy of 40c7_complex.pdb, chain N (#2) with copy of 40c7_complex.pdb, chain T (#3), sequence alignment score = 1009.8 RMSD between 220 pruned atom pairs is 0.472 angstroms; (across all 220 pairs: 0.472) > mmaker #4 to #2 Computing secondary structure [Repeated 1 time(s)] Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker copy of 40c7_complex.pdb, chain N (#2) with copy of 40c7_complex.pdb, chain F (#4), sequence alignment score = 1044.6 RMSD between 219 pruned atom pairs is 0.479 angstroms; (across all 220 pairs: 0.498) Drag select of 63 residues > select up 2189 atoms, 2197 bonds, 131 residues, 4 models selected > select up 3128 atoms, 3148 bonds, 192 residues, 4 models selected > show sel atoms > style sel stick Changed 3128 atom styles > color sel byhetero > hide #4 models > hide #3 models > hide #2 models > select clear > sequence chain #1/B Alignment identifier is 1/B > select #1/B 3357 atoms, 3397 bonds, 220 residues, 1 model selected > ui tool show ""Color Actions"" > color sel light salmon > color sel lime green > color sel turquoise > color sel cornflower blue > select #1/D 3294 atoms, 3335 bonds, 224 residues, 1 model selected > color sel navy > color sel indigo > select #1/A 782 atoms, 787 bonds, 48 residues, 1 model selected > ui tool show Contacts > contacts sel restrict cross resSeparation 5 interModel false intraMol false > ignoreHiddenModels true select true color #ed7258 reveal true log true Allowed overlap: -0.4 H-bond overlap reduction: 0.4 Ignore contacts between atoms separated by 4 bonds or less Ignore contacts between atoms in residues less than 5 apart in sequence Detect intra-residue contacts: False Detect intra-molecule contacts: False 236 contacts atom1 atom2 overlap distance 40c7_complex.pdb #1/A GLU 19 CG 40c7_complex.pdb #1/D ARG 26 O 0.783 2.397 40c7_complex.pdb #1/A GLU 19 HG2 40c7_complex.pdb #1/D ARG 26 O 0.691 1.789 40c7_complex.pdb #1/A HIS 43 CE1 40c7_complex.pdb #1/B ASN 34 O 0.599 2.581 40c7_complex.pdb #1/A GLU 39 CD 40c7_complex.pdb #1/B TRP 56 NE1 0.597 2.728 40c7_complex.pdb #1/A ARG 38 NH1 40c7_complex.pdb #1/B THR 59 CG2 0.586 2.739 40c7_complex.pdb #1/A HIS 43 NE2 40c7_complex.pdb #1/B ASN 34 HB2 0.572 2.068 40c7_complex.pdb #1/A ARG 15 NH2 40c7_complex.pdb #1/D VAL 2 CG2 0.500 2.825 40c7_complex.pdb #1/A GLU 39 OE2 40c7_complex.pdb #1/B TRP 56 CD1 0.499 2.681 40c7_complex.pdb #1/A ARG 38 NH1 40c7_complex.pdb #1/B THR 59 HG23 0.476 2.149 40c7_complex.pdb #1/A GLU 39 HB3 40c7_complex.pdb #1/B LYS 36 NZ 0.476 2.149 40c7_complex.pdb #1/A HIS 43 CE1 40c7_complex.pdb #1/B LYS 36 HE3 0.469 2.231 40c7_complex.pdb #1/A GLU 27 OE1 40c7_complex.pdb #1/B PHE 62 HE2 0.457 2.023 40c7_complex.pdb #1/A ARG 38 HH11 40c7_complex.pdb #1/B THR 59 CG2 0.443 2.257 40c7_complex.pdb #1/A HIS 43 HE1 40c7_complex.pdb #1/B LYS 36 CE 0.440 2.260 40c7_complex.pdb #1/A GLU 19 CG 40c7_complex.pdb #1/D ARG 26 HB3 0.435 2.265 40c7_complex.pdb #1/A GLU 19 OE2 40c7_complex.pdb #1/D ARG 26 C 0.432 2.748 40c7_complex.pdb #1/A HIS 43 CE1 40c7_complex.pdb #1/B LYS 36 CE 0.423 2.977 40c7_complex.pdb #1/A GLU 39 OE1 40c7_complex.pdb #1/B TRP 56 CE2 0.419 2.761 40c7_complex.pdb #1/A GLU 19 OE1 40c7_complex.pdb #1/D GLU 1 CA 0.415 2.765 40c7_complex.pdb #1/A GLU 19 OE1 40c7_complex.pdb #1/D GLU 1 C 0.413 2.767 40c7_complex.pdb #1/A GLU 19 OE2 40c7_complex.pdb #1/D ARG 26 O 0.390 2.570 40c7_complex.pdb #1/A GLN 20 OE1 40c7_complex.pdb #1/D GLU 1 N 0.384 2.321 40c7_complex.pdb #1/A HIS 43 NE2 40c7_complex.pdb #1/B ASN 34 CB 0.380 2.960 40c7_complex.pdb #1/A ARG 38 CD 40c7_complex.pdb #1/B THR 59 HG23 0.370 2.330 40c7_complex.pdb #1/A GLN 20 CD 40c7_complex.pdb #1/D GLU 1 N 0.357 2.968 40c7_complex.pdb #1/A ARG 8 NE 40c7_complex.pdb #1/D ASP 101 C 0.355 2.970 40c7_complex.pdb #1/A GLU 19 CD 40c7_complex.pdb #1/D ARG 26 HB3 0.354 2.346 40c7_complex.pdb #1/A GLU 19 CD 40c7_complex.pdb #1/D ARG 26 O 0.340 2.840 40c7_complex.pdb #1/A GLU 19 CD 40c7_complex.pdb #1/D GLU 1 H3 0.337 2.363 40c7_complex.pdb #1/A GLU 39 HB3 40c7_complex.pdb #1/B LYS 36 CE 0.322 2.378 40c7_complex.pdb #1/A GLN 42 O 40c7_complex.pdb #1/B ASN 35 HB3 0.313 2.167 40c7_complex.pdb #1/A ARG 8 HE 40c7_complex.pdb #1/D ASP 101 C 0.306 2.394 40c7_complex.pdb #1/A GLU 19 HG2 40c7_complex.pdb #1/D ARG 26 C 0.305 2.395 40c7_complex.pdb #1/A GLU 27 OE1 40c7_complex.pdb #1/B PHE 62 CE2 0.303 2.877 40c7_complex.pdb #1/A ARG 8 HD2 40c7_complex.pdb #1/D ASP 101 HB3 0.289 1.711 40c7_complex.pdb #1/A GLU 19 OE1 40c7_complex.pdb #1/D GLU 1 N 0.288 2.417 40c7_complex.pdb #1/A GLU 19 OE2 40c7_complex.pdb #1/D ARG 26 CB 0.277 2.903 40c7_complex.pdb #1/A HIS 43 HE1 40c7_complex.pdb #1/B LYS 36 HE3 0.276 1.724 40c7_complex.pdb #1/A ARG 8 HE 40c7_complex.pdb #1/D ASP 101 O 0.257 1.823 40c7_complex.pdb #1/A ARG 15 HH22 40c7_complex.pdb #1/D VAL 2 CG2 0.257 2.443 40c7_complex.pdb #1/A ARG 38 HH11 40c7_complex.pdb #1/B THR 59 HG23 0.256 1.744 40c7_complex.pdb #1/A ARG 8 CD 40c7_complex.pdb #1/D ASP 101 O 0.256 2.924 40c7_complex.pdb #1/A GLU 19 CG 40c7_complex.pdb #1/D ARG 26 CB 0.248 3.152 40c7_complex.pdb #1/A ARG 8 HD2 40c7_complex.pdb #1/D ASP 101 CB 0.246 2.454 40c7_complex.pdb #1/A GLU 39 CB 40c7_complex.pdb #1/B LYS 36 NZ 0.243 3.082 40c7_complex.pdb #1/A GLN 20 OE1 40c7_complex.pdb #1/D GLU 1 HB2 0.242 2.238 40c7_complex.pdb #1/A GLU 19 HG2 40c7_complex.pdb #1/D ARG 26 HB3 0.236 1.764 40c7_complex.pdb #1/A GLN 20 OE1 40c7_complex.pdb #1/D GLU 1 H1 0.225 1.855 40c7_complex.pdb #1/A GLU 19 HG2 40c7_complex.pdb #1/D ARG 26 CB 0.221 2.479 40c7_complex.pdb #1/A GLN 20 OE1 40c7_complex.pdb #1/D GLU 1 CB 0.218 2.962 40c7_complex.pdb #1/A GLU 39 CD 40c7_complex.pdb #1/B TRP 56 CD1 0.217 3.183 40c7_complex.pdb #1/A GLU 19 CG 40c7_complex.pdb #1/D ARG 26 C 0.216 3.184 40c7_complex.pdb #1/A ARG 38 CD 40c7_complex.pdb #1/B THR 59 CG2 0.206 3.194 40c7_complex.pdb #1/A GLU 19 OE1 40c7_complex.pdb #1/D GLU 1 H3 0.205 1.875 40c7_complex.pdb #1/A GLN 42 OE1 40c7_complex.pdb #1/B ASN 35 O 0.205 2.755 40c7_complex.pdb #1/A ARG 15 NH2 40c7_complex.pdb #1/D VAL 2 HG22 0.202 2.423 40c7_complex.pdb #1/A ARG 8 NE 40c7_complex.pdb #1/D ASP 101 O 0.194 2.511 40c7_complex.pdb #1/A ARG 15 HH22 40c7_complex.pdb #1/D VAL 2 HG22 0.193 1.807 40c7_complex.pdb #1/A ARG 38 HD3 40c7_complex.pdb #1/B THR 59 HG23 0.185 1.815 40c7_complex.pdb #1/A GLU 19 CD 40c7_complex.pdb #1/D ARG 26 CB 0.180 3.220 40c7_complex.pdb #1/A GLU 19 CD 40c7_complex.pdb #1/D GLU 1 N 0.175 3.150 40c7_complex.pdb #1/A GLU 19 OE2 40c7_complex.pdb #1/D ARG 26 HB3 0.166 2.314 40c7_complex.pdb #1/A ARG 15 NE 40c7_complex.pdb #1/D PHE 27 HB3 0.162 2.463 40c7_complex.pdb #1/A GLN 20 CD 40c7_complex.pdb #1/D GLU 1 H1 0.155 2.545 40c7_complex.pdb #1/A GLU 19 CB 40c7_complex.pdb #1/D GLU 1 H3 0.152 2.548 40c7_complex.pdb #1/A GLN 42 O 40c7_complex.pdb #1/B ASN 35 CB 0.140 3.040 40c7_complex.pdb #1/A GLU 19 HG2 40c7_complex.pdb #1/D ARG 26 CA 0.137 2.563 40c7_complex.pdb #1/A GLU 39 HB3 40c7_complex.pdb #1/B LYS 36 HE2 0.137 1.863 40c7_complex.pdb #1/A GLU 19 CB 40c7_complex.pdb #1/D GLU 1 N 0.134 3.191 40c7_complex.pdb #1/A ARG 15 CZ 40c7_complex.pdb #1/D PHE 27 HB3 0.133 2.567 40c7_complex.pdb #1/A GLN 20 CD 40c7_complex.pdb #1/D GLU 1 H2 0.122 2.578 40c7_complex.pdb #1/A ARG 38 NH1 40c7_complex.pdb #1/B THR 59 HG22 0.122 2.503 40c7_complex.pdb #1/A GLU 19 CD 40c7_complex.pdb #1/D GLU 1 C 0.120 3.280 40c7_complex.pdb #1/A ARG 8 CD 40c7_complex.pdb #1/D ASP 101 HB3 0.118 2.582 40c7_complex.pdb #1/A ARG 38 CZ 40c7_complex.pdb #1/B THR 59 HG23 0.118 2.582 40c7_complex.pdb #1/A GLU 39 OE1 40c7_complex.pdb #1/B TRP 56 CZ2 0.116 3.064 40c7_complex.pdb #1/A GLU 39 CD 40c7_complex.pdb #1/B TRP 56 CE2 0.116 3.284 40c7_complex.pdb #1/A ARG 15 NH2 40c7_complex.pdb #1/D VAL 2 HG23 0.116 2.509 40c7_complex.pdb #1/A ARG 15 CD 40c7_complex.pdb #1/D PHE 27 HB3 0.113 2.587 40c7_complex.pdb #1/A GLU 39 CB 40c7_complex.pdb #1/B LYS 36 CE 0.105 3.295 40c7_complex.pdb #1/A ARG 38 HD3 40c7_complex.pdb #1/B THR 59 CG2 0.101 2.599 40c7_complex.pdb #1/A HIS 43 HE1 40c7_complex.pdb #1/B LYS 36 CD 0.089 2.611 40c7_complex.pdb #1/A GLN 42 OE1 40c7_complex.pdb #1/B LYS 36 HA 0.084 2.396 40c7_complex.pdb #1/A GLN 20 CG 40c7_complex.pdb #1/D GLU 1 H2 0.081 2.619 40c7_complex.pdb #1/A ARG 31 CZ 40c7_complex.pdb #1/B GLU 61 OE1 0.081 3.099 40c7_complex.pdb #1/A ARG 15 HD2 40c7_complex.pdb #1/D PHE 27 CB 0.076 2.624 40c7_complex.pdb #1/A ARG 15 HH21 40c7_complex.pdb #1/D VAL 2 CG2 0.075 2.625 40c7_complex.pdb #1/A GLU 39 OE1 40c7_complex.pdb #1/B LYS 36 HG2 0.073 2.407 40c7_complex.pdb #1/A GLU 39 CD 40c7_complex.pdb #1/B TRP 56 HE1 0.068 2.632 40c7_complex.pdb #1/A GLN 20 OE1 40c7_complex.pdb #1/D GLU 1 CA 0.067 3.113 40c7_complex.pdb #1/A HIS 43 CE1 40c7_complex.pdb #1/B ASN 34 HB2 0.063 2.637 40c7_complex.pdb #1/A GLU 39 CB 40c7_complex.pdb #1/B LYS 36 HE2 0.060 2.640 40c7_complex.pdb #1/A ARG 15 HD2 40c7_complex.pdb #1/D PHE 27 HB3 0.057 1.943 40c7_complex.pdb #1/A GLU 19 HG3 40c7_complex.pdb #1/D ARG 26 O 0.053 2.427 40c7_complex.pdb #1/A GLU 39 HB3 40c7_complex.pdb #1/B LYS 36 HZ1 0.035 1.965 40c7_complex.pdb #1/A ARG 8 HD2 40c7_complex.pdb #1/D ASP 101 O 0.034 2.446 40c7_complex.pdb #1/A ARG 8 CD 40c7_complex.pdb #1/D ASP 101 CB 0.032 3.368 40c7_complex.pdb #1/A ARG 15 HH12 40c7_complex.pdb #1/D LYS 98 CE 0.031 2.669 40c7_complex.pdb #1/A GLU 19 CD 40c7_complex.pdb #1/D GLU 1 O 0.031 3.149 40c7_complex.pdb #1/A GLU 39 OE1 40c7_complex.pdb #1/B LYS 36 CG 0.031 3.149 40c7_complex.pdb #1/A GLU 39 HB3 40c7_complex.pdb #1/B LYS 36 HZ3 0.029 1.971 40c7_complex.pdb #1/A ARG 8 HH21 40c7_complex.pdb #1/D THR 102 C 0.026 2.674 40c7_complex.pdb #1/A GLU 19 CD 40c7_complex.pdb #1/D ARG 26 C 0.023 3.377 40c7_complex.pdb #1/A ARG 15 NH1 40c7_complex.pdb #1/D TYR 32 CE2 0.017 3.308 40c7_complex.pdb #1/A HIS 43 NE2 40c7_complex.pdb #1/B LYS 36 HE3 0.011 2.629 40c7_complex.pdb #1/A GLN 20 CG 40c7_complex.pdb #1/D GLU 1 N 0.008 3.317 40c7_complex.pdb #1/A GLU 39 OE1 40c7_complex.pdb #1/B LYS 36 CE -0.012 3.192 40c7_complex.pdb #1/A ARG 15 CD 40c7_complex.pdb #1/D PHE 27 CB -0.015 3.415 40c7_complex.pdb #1/A ARG 15 HH12 40c7_complex.pdb #1/D LYS 98 CD -0.016 2.716 40c7_complex.pdb #1/A GLU 39 OE1 40c7_complex.pdb #1/B LYS 36 HE2 -0.017 2.497 40c7_complex.pdb #1/A GLN 20 OE1 40c7_complex.pdb #1/D GLU 1 H2 -0.021 2.101 40c7_complex.pdb #1/A SER 5 HB3 40c7_complex.pdb #1/B LYS 36 HZ1 -0.024 2.024 40c7_complex.pdb #1/A ARG 38 CZ 40c7_complex.pdb #1/B THR 59 CG2 -0.027 3.427 40c7_complex.pdb #1/A GLU 19 HB3 40c7_complex.pdb #1/D GLU 1 H3 -0.030 2.030 40c7_complex.pdb #1/A ARG 38 NE 40c7_complex.pdb #1/B THR 59 HG23 -0.031 2.656 40c7_complex.pdb #1/A GLU 35 OE2 40c7_complex.pdb #1/D ASP 101 CB -0.038 3.218 40c7_complex.pdb #1/A ARG 31 HH21 40c7_complex.pdb #1/B TYR 55 CZ -0.048 2.748 40c7_complex.pdb #1/A GLU 19 HB3 40c7_complex.pdb #1/D GLU 1 N -0.057 2.682 40c7_complex.pdb #1/A GLU 19 OE2 40c7_complex.pdb #1/D PHE 27 HD1 -0.058 2.538 40c7_complex.pdb #1/A ARG 15 CZ 40c7_complex.pdb #1/D PHE 27 CB -0.059 3.459 40c7_complex.pdb #1/A HIS 43 NE2 40c7_complex.pdb #1/B ASN 34 CA -0.059 3.399 40c7_complex.pdb #1/A ARG 15 HH12 40c7_complex.pdb #1/D LYS 98 HE2 -0.062 2.062 40c7_complex.pdb #1/A HIS 43 CE1 40c7_complex.pdb #1/B LYS 36 CD -0.063 3.463 40c7_complex.pdb #1/A SER 5 CB 40c7_complex.pdb #1/B LYS 36 HZ1 -0.064 2.764 40c7_complex.pdb #1/A GLU 39 OE1 40c7_complex.pdb #1/B TRP 56 NE1 -0.069 2.774 40c7_complex.pdb #1/A ARG 15 NH2 40c7_complex.pdb #1/D VAL 2 CA -0.069 3.394 40c7_complex.pdb #1/A GLU 39 CB 40c7_complex.pdb #1/B LYS 36 HZ3 -0.069 2.769 40c7_complex.pdb #1/A ARG 15 HH21 40c7_complex.pdb #1/D VAL 2 CA -0.072 2.772 40c7_complex.pdb #1/A GLU 19 CB 40c7_complex.pdb #1/D ARG 26 HB3 -0.082 2.782 40c7_complex.pdb #1/A GLU 19 CG 40c7_complex.pdb #1/D ARG 26 CA -0.084 3.484 40c7_complex.pdb #1/A GLU 19 OE1 40c7_complex.pdb #1/D GLU 1 O -0.092 3.052 40c7_complex.pdb #1/A GLU 39 OE2 40c7_complex.pdb #1/B TRP 56 NE1 -0.092 2.797 40c7_complex.pdb #1/A ARG 15 NH1 40c7_complex.pdb #1/D TYR 32 HE2 -0.092 2.717 40c7_complex.pdb #1/A ARG 31 NE 40c7_complex.pdb #1/B GLU 61 OE1 -0.095 2.800 40c7_complex.pdb #1/A HIS 43 ND1 40c7_complex.pdb #1/B ASN 34 O -0.099 2.804 40c7_complex.pdb #1/A ARG 15 NE 40c7_complex.pdb #1/D PHE 27 CB -0.106 3.431 40c7_complex.pdb #1/A HIS 43 CG 40c7_complex.pdb #1/B ASN 34 O -0.109 3.289 40c7_complex.pdb #1/A ARG 8 CD 40c7_complex.pdb #1/D ASP 101 C -0.114 3.514 40c7_complex.pdb #1/A ARG 31 HH21 40c7_complex.pdb #1/B TYR 55 CE1 -0.118 2.818 40c7_complex.pdb #1/A ARG 15 HH11 40c7_complex.pdb #1/D TYR 32 CE2 -0.119 2.819 40c7_complex.pdb #1/A HIS 43 CE1 40c7_complex.pdb #1/B ASN 34 CB -0.119 3.519 40c7_complex.pdb #1/A ARG 38 HH11 40c7_complex.pdb #1/B THR 59 HG22 -0.123 2.123 40c7_complex.pdb #1/A ARG 15 HH21 40c7_complex.pdb #1/D VAL 2 N -0.123 2.748 40c7_complex.pdb #1/A ARG 15 HH21 40c7_complex.pdb #1/D VAL 2 HG23 -0.125 2.125 40c7_complex.pdb #1/A SER 5 HB3 40c7_complex.pdb #1/B LYS 36 NZ -0.126 2.751 40c7_complex.pdb #1/A ARG 15 NH2 40c7_complex.pdb #1/D PHE 27 CD1 -0.126 3.451 40c7_complex.pdb #1/A GLN 42 O 40c7_complex.pdb #1/B ASN 35 HD22 -0.134 2.214 40c7_complex.pdb #1/A GLU 35 OE2 40c7_complex.pdb #1/D ASP 101 HB2 -0.134 2.614 40c7_complex.pdb #1/A GLN 42 OE1 40c7_complex.pdb #1/B LYS 36 CA -0.140 3.320 40c7_complex.pdb #1/A ARG 15 NH2 40c7_complex.pdb #1/D VAL 2 CB -0.143 3.468 40c7_complex.pdb #1/A HIS 43 HE1 40c7_complex.pdb #1/B LYS 36 CG -0.146 2.846 40c7_complex.pdb #1/A GLU 39 CB 40c7_complex.pdb #1/B LYS 36 HZ1 -0.147 2.847 40c7_complex.pdb #1/A GLU 27 HB3 40c7_complex.pdb #1/B PHE 62 CE2 -0.149 2.849 40c7_complex.pdb #1/A GLN 42 O 40c7_complex.pdb #1/B ASN 35 ND2 -0.153 2.858 40c7_complex.pdb #1/A GLN 42 O 40c7_complex.pdb #1/B ASN 35 CG -0.156 3.336 40c7_complex.pdb #1/A HIS 43 CE1 40c7_complex.pdb #1/B ASN 34 C -0.161 3.561 40c7_complex.pdb #1/A GLU 39 OE2 40c7_complex.pdb #1/B TRP 56 HD1 -0.166 2.646 40c7_complex.pdb #1/A ARG 8 NH2 40c7_complex.pdb #1/D THR 102 C -0.176 3.501 40c7_complex.pdb #1/A ARG 15 NH1 40c7_complex.pdb #1/D LYS 98 CE -0.189 3.514 40c7_complex.pdb #1/A GLU 19 CG 40c7_complex.pdb #1/D GLU 1 H3 -0.192 2.892 40c7_complex.pdb #1/A ARG 15 NH1 40c7_complex.pdb #1/D PHE 27 HB3 -0.193 2.818 40c7_complex.pdb #1/A HIS 43 CD2 40c7_complex.pdb #1/B ASN 34 O -0.195 3.375 40c7_complex.pdb #1/A GLU 39 CA 40c7_complex.pdb #1/B LYS 36 HE2 -0.195 2.895 40c7_complex.pdb #1/A ARG 15 NH1 40c7_complex.pdb #1/D PHE 27 CB -0.201 3.526 40c7_complex.pdb #1/A ARG 8 HH21 40c7_complex.pdb #1/D THR 102 CA -0.203 2.903 40c7_complex.pdb #1/A ARG 15 NH1 40c7_complex.pdb #1/D LYS 98 CD -0.205 3.530 40c7_complex.pdb #1/A GLN 20 HG2 40c7_complex.pdb #1/D GLU 1 H2 -0.210 2.210 40c7_complex.pdb #1/A SER 5 CB 40c7_complex.pdb #1/B LYS 36 NZ -0.211 3.536 40c7_complex.pdb #1/A GLU 39 OE1 40c7_complex.pdb #1/B TRP 56 CD1 -0.212 3.392 40c7_complex.pdb #1/A HIS 43 NE2 40c7_complex.pdb #1/B LYS 36 CE -0.212 3.552 40c7_complex.pdb #1/A GLU 19 OE2 40c7_complex.pdb #1/D GLU 1 C -0.213 3.393 40c7_complex.pdb #1/A GLU 19 OE2 40c7_complex.pdb #1/D GLU 1 O -0.214 3.174 40c7_complex.pdb #1/A GLU 39 OE1 40c7_complex.pdb #1/B TRP 56 CD2 -0.225 3.405 40c7_complex.pdb #1/A ARG 15 NH1 40c7_complex.pdb #1/D LYS 98 HE2 -0.227 2.852 40c7_complex.pdb #1/A ARG 15 NH2 40c7_complex.pdb #1/D VAL 2 HA -0.233 2.858 40c7_complex.pdb #1/A GLU 19 OE2 40c7_complex.pdb #1/D ARG 26 CA -0.235 3.415 40c7_complex.pdb #1/A ARG 31 NH2 40c7_complex.pdb #1/B TYR 55 CZ -0.237 3.562 40c7_complex.pdb #1/A ARG 15 HH11 40c7_complex.pdb #1/D TYR 32 HE2 -0.238 2.238 40c7_complex.pdb #1/A GLU 39 CG 40c7_complex.pdb #1/B LYS 36 HZ3 -0.238 2.938 40c7_complex.pdb #1/A ARG 31 CZ 40c7_complex.pdb #1/B GLU 61 OE2 -0.241 3.421 40c7_complex.pdb #1/A GLU 19 OE2 40c7_complex.pdb #1/D PHE 27 CD1 -0.242 3.422 40c7_complex.pdb #1/A ARG 31 CZ 40c7_complex.pdb #1/B GLU 61 CD -0.242 3.642 40c7_complex.pdb #1/A ARG 8 HH21 40c7_complex.pdb #1/D THR 102 N -0.243 2.868 40c7_complex.pdb #1/A GLN 20 HG2 40c7_complex.pdb #1/D GLU 1 N -0.249 2.874 40c7_complex.pdb #1/A HIS 43 NE2 40c7_complex.pdb #1/B ASN 34 O -0.249 2.969 40c7_complex.pdb #1/A GLU 19 OE1 40c7_complex.pdb #1/D GLU 1 HA -0.252 2.732 40c7_complex.pdb #1/A GLU 19 CB 40c7_complex.pdb #1/D ARG 26 CB -0.255 3.655 40c7_complex.pdb #1/A HIS 43 HE1 40c7_complex.pdb #1/B LYS 36 HG3 -0.261 2.261 40c7_complex.pdb #1/A GLU 19 CD 40c7_complex.pdb #1/D GLU 1 CA -0.269 3.669 40c7_complex.pdb #1/A GLU 39 CG 40c7_complex.pdb #1/B LYS 36 NZ -0.274 3.599 40c7_complex.pdb #1/A HIS 43 HE1 40c7_complex.pdb #1/B ASN 34 O -0.277 2.757 40c7_complex.pdb #1/A HIS 43 NE2 40c7_complex.pdb #1/B ASN 34 C -0.277 3.617 40c7_complex.pdb #1/A GLN 42 OE1 40c7_complex.pdb #1/B LYS 36 CG -0.280 3.460 40c7_complex.pdb #1/A ARG 8 NE 40c7_complex.pdb #1/D THR 102 N -0.282 3.532 40c7_complex.pdb #1/A ARG 8 HE 40c7_complex.pdb #1/D THR 102 N -0.284 2.909 40c7_complex.pdb #1/A GLU 27 OE1 40c7_complex.pdb #1/B PHE 62 CZ -0.287 3.467 40c7_complex.pdb #1/A GLU 39 OE2 40c7_complex.pdb #1/B TRP 56 CG -0.289 3.469 40c7_complex.pdb #1/A GLU 27 CB 40c7_complex.pdb #1/B PHE 62 CE2 -0.293 3.693 40c7_complex.pdb #1/A GLU 39 OE1 40c7_complex.pdb #1/B LYS 36 CD -0.294 3.474 40c7_complex.pdb #1/A ARG 38 NE 40c7_complex.pdb #1/B THR 59 CG2 -0.296 3.621 40c7_complex.pdb #1/A GLU 39 CG 40c7_complex.pdb #1/B TRP 56 NE1 -0.297 3.622 40c7_complex.pdb #1/A ARG 31 NH2 40c7_complex.pdb #1/B GLU 61 CD -0.307 3.632 40c7_complex.pdb #1/A ARG 15 NH2 40c7_complex.pdb #1/D VAL 2 N -0.308 3.558 40c7_complex.pdb #1/A ARG 8 HD2 40c7_complex.pdb #1/D ASP 101 C -0.311 3.011 40c7_complex.pdb #1/A GLU 19 HB2 40c7_complex.pdb #1/D GLU 1 N -0.312 2.937 40c7_complex.pdb #1/A ARG 15 CZ 40c7_complex.pdb #1/D PHE 27 CD1 -0.312 3.712 40c7_complex.pdb #1/A ARG 15 HH21 40c7_complex.pdb #1/D VAL 2 HA -0.317 2.317 40c7_complex.pdb #1/A GLU 27 CD 40c7_complex.pdb #1/B PHE 62 HE2 -0.317 3.017 40c7_complex.pdb #1/A GLU 27 CD 40c7_complex.pdb #1/B PHE 62 CE2 -0.322 3.722 40c7_complex.pdb #1/A HIS 43 HE1 40c7_complex.pdb #1/B LYS 36 HE2 -0.325 2.325 40c7_complex.pdb #1/A ARG 8 HH21 40c7_complex.pdb #1/D THR 102 O -0.332 2.412 40c7_complex.pdb #1/A ARG 31 NE 40c7_complex.pdb #1/B GLU 61 CD -0.332 3.657 40c7_complex.pdb #1/A GLU 19 OE2 40c7_complex.pdb #1/D ARG 26 HB2 -0.338 2.818 40c7_complex.pdb #1/A ARG 38 HD2 40c7_complex.pdb #1/B THR 59 HG23 -0.340 2.340 40c7_complex.pdb #1/A ARG 15 HD2 40c7_complex.pdb #1/D PHE 27 CA -0.340 3.040 40c7_complex.pdb #1/A ARG 8 NH2 40c7_complex.pdb #1/D THR 102 N -0.345 3.595 40c7_complex.pdb #1/A ARG 31 NH2 40c7_complex.pdb #1/B TYR 55 CE1 -0.345 3.670 40c7_complex.pdb #1/A GLU 39 O 40c7_complex.pdb #1/B LYS 36 CE -0.356 3.536 40c7_complex.pdb #1/A HIS 43 CE1 40c7_complex.pdb #1/B LYS 36 CG -0.357 3.757 40c7_complex.pdb #1/A HIS 43 CD2 40c7_complex.pdb #1/B ASN 34 CA -0.357 3.757 40c7_complex.pdb #1/A ARG 31 HE 40c7_complex.pdb #1/B GLU 61 OE1 -0.367 2.447 40c7_complex.pdb #1/A ARG 15 NH2 40c7_complex.pdb #1/D PHE 27 HD1 -0.367 2.992 40c7_complex.pdb #1/A HIS 43 CE1 40c7_complex.pdb #1/B LYS 36 HE2 -0.369 3.069 40c7_complex.pdb #1/A GLU 27 CG 40c7_complex.pdb #1/B PHE 62 CZ -0.369 3.769 40c7_complex.pdb #1/A GLU 19 CG 40c7_complex.pdb #1/D GLU 1 N -0.371 3.696 40c7_complex.pdb #1/A GLU 39 CA 40c7_complex.pdb #1/B LYS 36 CE -0.371 3.771 40c7_complex.pdb #1/A GLN 34 HE22 40c7_complex.pdb #1/B TYR 55 OH -0.372 2.472 40c7_complex.pdb #1/A ARG 38 HD2 40c7_complex.pdb #1/B THR 59 CG2 -0.373 3.073 40c7_complex.pdb #1/A GLN 42 HB2 40c7_complex.pdb #1/B ASN 35 O -0.379 2.859 40c7_complex.pdb #1/A ARG 8 NE 40c7_complex.pdb #1/D ASP 101 CA -0.380 3.705 40c7_complex.pdb #1/A HIS 43 CD2 40c7_complex.pdb #1/B ASN 34 HB2 -0.381 3.081 40c7_complex.pdb #1/A ARG 8 HD2 40c7_complex.pdb #1/D ASP 101 CA -0.385 3.085 40c7_complex.pdb #1/A HIS 43 CD2 40c7_complex.pdb #1/B ASN 34 CB -0.388 3.788 40c7_complex.pdb #1/A ARG 8 CD 40c7_complex.pdb #1/D ASP 101 CA -0.389 3.789 40c7_complex.pdb #1/A ARG 8 NH2 40c7_complex.pdb #1/D THR 102 O -0.390 3.095 40c7_complex.pdb #1/A ARG 15 HG3 40c7_complex.pdb #1/D ARG 26 O -0.393 2.873 236 contacts > style sel stick Changed 154 atom styles > sequence chain #1/D Alignment identifier is 1/D > select add #1 9155 atoms, 9260 bonds, 236 pseudobonds, 612 residues, 2 models selected > style sel stick Changed 9155 atom styles > save /Users/leightongo/Desktop/40c7.cxs ——— End of log from Tue Dec 9 10:35:55 2025 ——— > view name session-start opened ChimeraX session > set bgColor white > ui mousemode right select Drag select of 643 atoms, 185 residues, 209 pseudobonds, 605 bonds > select up 2921 atoms, 2952 bonds, 209 pseudobonds, 188 residues, 2 models selected > select up 2948 atoms, 2980 bonds, 209 pseudobonds, 188 residues, 2 models selected > select up 3651 atoms, 3694 bonds, 209 pseudobonds, 237 residues, 2 models selected > select up 7433 atoms, 7519 bonds, 209 pseudobonds, 492 residues, 2 models selected > select up 9155 atoms, 9260 bonds, 236 pseudobonds, 612 residues, 2 models selected > hide sel atoms > show sel cartoons > open > /Users/leightongo/Downloads/fold_49d12_a1pro/fold_49d12_a1pro_model_0.cif Chain information for fold_49d12_a1pro_model_0.cif #6 --- Chain | Description A | . B | . C | . Computing secondary structure > open > /Users/leightongo/Downloads/fold_49d12_a1pro/fold_49d12_a1pro_model_0.cif Chain information for fold_49d12_a1pro_model_0.cif #7 --- Chain | Description A | . B | . C | . Computing secondary structure > close #7 > select subtract #1 Nothing selected > select add #6 4050 atoms, 4142 bonds, 535 residues, 1 model selected > show sel atoms > hide sel cartoons > show sel cartoons > hide sel atoms > mmaker #6 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 40c7_complex.pdb, chain B (#1) with fold_49d12_a1pro_model_0.cif, chain B (#6), sequence alignment score = 765 RMSD between 193 pruned atom pairs is 0.881 angstroms; (across all 215 pairs: 2.110) > hide #!1 models > select subtract #6 Nothing selected Drag select of 97 residues > select up 1182 atoms, 1199 bonds, 157 residues, 1 model selected > select up 3588 atoms, 3672 bonds, 477 residues, 1 model selected > select up 4050 atoms, 4142 bonds, 535 residues, 1 model selected > select down 3588 atoms, 3672 bonds, 477 residues, 1 model selected > hide sel cartoons > ui mousemode right translate > select #6/C:cys 36 atoms, 30 bonds, 6 residues, 1 model selected > show sel atoms > ui tool show ""Build Structure"" > bond sel Created 2 bonds > bond length #6/C:17@CB#6/C:17@SG 1.521 > bond length #6/C:37@CA#6/C:37@C 1.521 > bond length #6/C:17@N#6/C:17@CA 1.521 > bond length #6/C:17@CA#6/C:17@C 1.521 > bond length #6/C:37@CA#6/C:37@CB 1.521 > bond length #6/C:17@CA#6/C:17@CB 1.521 > bond length #6/C:37@C#6/C:37@O 1.521 > bond length #6/C:17@C#6/C:17@O 1.521 > bond length #6/C:37@N#6/C:37@CA 1.521 > bond length #6/C:37@CB#6/C:37@SG 1.521 > bond length #6/C:46@N#6/C:46@CA 1.521 > bond length #6/C:21@N#6/C:21@CA 1.521 > bond length #6/C:46@CA#6/C:46@C 1.521 > bond length #6/C:21@CA#6/C:21@C 1.521 > bond length #6/C:46@CA#6/C:46@CB 1.521 > bond length #6/C:21@CA#6/C:21@CB 1.521 > bond length #6/C:13@N#6/C:13@CA 1.521 > bond length #6/C:46@C#6/C:46@O 1.521 > bond length #6/C:21@C#6/C:21@O 1.521 > bond length #6/C:46@CB#6/C:46@SG 1.521 > bond length #6/C:21@CB#6/C:21@SG 1.521 > bond length #6/C:33@N#6/C:33@CA 1.521 > bond length #6/C:33@CA#6/C:33@C 1.521 > bond length #6/C:13@CA#6/C:13@C 1.521 > bond length #6/C:33@CA#6/C:33@CB 1.521 > bond length #6/C:13@CA#6/C:13@CB 1.521 > bond length #6/C:33@C#6/C:33@O 1.521 > bond length #6/C:13@C#6/C:13@O 1.521 > bond length #6/C:33@CB#6/C:33@SG 1.521 > bond length #6/C:13@CB#6/C:13@SG 1.521 > bond length #6/C:17@CB#6/C:17@SG 1.531 > bond length #6/C:37@CA#6/C:37@C 1.531 > bond length #6/C:17@N#6/C:17@CA 1.531 > bond length #6/C:17@CA#6/C:17@C 1.531 > bond length #6/C:37@CA#6/C:37@CB 1.531 > bond length #6/C:17@CA#6/C:17@CB 1.531 > bond length #6/C:37@C#6/C:37@O 1.531 > bond length #6/C:17@C#6/C:17@O 1.531 > bond length #6/C:37@N#6/C:37@CA 1.531 > bond length #6/C:37@CB#6/C:37@SG 1.531 > bond length #6/C:46@N#6/C:46@CA 1.531 > bond length #6/C:21@N#6/C:21@CA 1.531 > bond length #6/C:46@CA#6/C:46@C 1.531 > bond length #6/C:21@CA#6/C:21@C 1.531 > bond length #6/C:46@CA#6/C:46@CB 1.531 > bond length #6/C:21@CA#6/C:21@CB 1.531 > bond length #6/C:13@N#6/C:13@CA 1.531 > bond length #6/C:46@C#6/C:46@O 1.531 > bond length #6/C:21@C#6/C:21@O 1.531 > bond length #6/C:46@CB#6/C:46@SG 1.531 > bond length #6/C:21@CB#6/C:21@SG 1.531 > bond length #6/C:33@N#6/C:33@CA 1.531 > bond length #6/C:33@CA#6/C:33@C 1.531 > bond length #6/C:13@CA#6/C:13@C 1.531 > bond length #6/C:33@CA#6/C:33@CB 1.531 > bond length #6/C:13@CA#6/C:13@CB 1.531 > bond length #6/C:33@C#6/C:33@O 1.531 > bond length #6/C:13@C#6/C:13@O 1.531 > bond length #6/C:33@CB#6/C:33@SG 1.531 > bond length #6/C:13@CB#6/C:13@SG 1.531 > bond length #6/C:17@CB#6/C:17@SG 1.541 > bond length #6/C:37@CA#6/C:37@C 1.541 > bond length #6/C:17@N#6/C:17@CA 1.541 > bond length #6/C:17@CA#6/C:17@C 1.541 > bond length #6/C:37@CA#6/C:37@CB 1.541 > bond length #6/C:17@CA#6/C:17@CB 1.541 > bond length #6/C:37@C#6/C:37@O 1.541 > bond length #6/C:17@C#6/C:17@O 1.541 > bond length #6/C:37@N#6/C:37@CA 1.541 > bond length #6/C:37@CB#6/C:37@SG 1.541 > bond length #6/C:46@N#6/C:46@CA 1.541 > bond length #6/C:21@N#6/C:21@CA 1.541 > bond length #6/C:46@CA#6/C:46@C 1.541 > bond length #6/C:21@CA#6/C:21@C 1.541 > bond length #6/C:46@CA#6/C:46@CB 1.541 > bond length #6/C:21@CA#6/C:21@CB 1.541 > bond length #6/C:13@N#6/C:13@CA 1.541 > bond length #6/C:46@C#6/C:46@O 1.541 > bond length #6/C:21@C#6/C:21@O 1.541 > bond length #6/C:46@CB#6/C:46@SG 1.541 > bond length #6/C:21@CB#6/C:21@SG 1.541 > bond length #6/C:33@N#6/C:33@CA 1.541 > bond length #6/C:33@CA#6/C:33@C 1.541 > bond length #6/C:13@CA#6/C:13@C 1.541 > bond length #6/C:33@CA#6/C:33@CB 1.541 > bond length #6/C:13@CA#6/C:13@CB 1.541 > bond length #6/C:33@C#6/C:33@O 1.541 > bond length #6/C:13@C#6/C:13@O 1.541 > bond length #6/C:33@CB#6/C:33@SG 1.541 > bond length #6/C:13@CB#6/C:13@SG 1.541 > bond length #6/C:17@CB#6/C:17@SG 1.551 > bond length #6/C:37@CA#6/C:37@C 1.551 > bond length #6/C:17@N#6/C:17@CA 1.551 > bond length #6/C:17@CA#6/C:17@C 1.551 > bond length #6/C:37@CA#6/C:37@CB 1.551 > bond length #6/C:17@CA#6/C:17@CB 1.551 > bond length #6/C:37@C#6/C:37@O 1.551 > bond length #6/C:17@C#6/C:17@O 1.551 > bond length #6/C:37@N#6/C:37@CA 1.551 > bond length #6/C:37@CB#6/C:37@SG 1.551 > bond length #6/C:46@N#6/C:46@CA 1.551 > bond length #6/C:21@N#6/C:21@CA 1.551 > bond length #6/C:46@CA#6/C:46@C 1.551 > bond length #6/C:21@CA#6/C:21@C 1.551 > bond length #6/C:46@CA#6/C:46@CB 1.551 > bond length #6/C:21@CA#6/C:21@CB 1.551 > bond length #6/C:13@N#6/C:13@CA 1.551 > bond length #6/C:46@C#6/C:46@O 1.551 > bond length #6/C:21@C#6/C:21@O 1.551 > bond length #6/C:46@CB#6/C:46@SG 1.551 > bond length #6/C:21@CB#6/C:21@SG 1.551 > bond length #6/C:33@N#6/C:33@CA 1.551 > bond length #6/C:33@CA#6/C:33@C 1.551 > bond length #6/C:13@CA#6/C:13@C 1.551 > bond length #6/C:33@CA#6/C:33@CB 1.551 > bond length #6/C:13@CA#6/C:13@CB 1.551 > bond length #6/C:33@C#6/C:33@O 1.551 > bond length #6/C:13@C#6/C:13@O 1.551 > bond length #6/C:33@CB#6/C:33@SG 1.551 > bond length #6/C:13@CB#6/C:13@SG 1.551 > bond length #6/C:17@CB#6/C:17@SG 1.561 > bond length #6/C:37@CA#6/C:37@C 1.561 > bond length #6/C:17@N#6/C:17@CA 1.561 > bond length #6/C:17@CA#6/C:17@C 1.561 > bond length #6/C:37@CA#6/C:37@CB 1.561 > bond length #6/C:17@CA#6/C:17@CB 1.561 > bond length #6/C:37@C#6/C:37@O 1.561 > bond length #6/C:17@C#6/C:17@O 1.561 > bond length #6/C:37@N#6/C:37@CA 1.561 > bond length #6/C:37@CB#6/C:37@SG 1.561 > bond length #6/C:46@N#6/C:46@CA 1.561 > bond length #6/C:21@N#6/C:21@CA 1.561 > bond length #6/C:46@CA#6/C:46@C 1.561 > bond length #6/C:21@CA#6/C:21@C 1.561 > bond length #6/C:46@CA#6/C:46@CB 1.561 > bond length #6/C:21@CA#6/C:21@CB 1.561 > bond length #6/C:13@N#6/C:13@CA 1.561 > bond length #6/C:46@C#6/C:46@O 1.561 > bond length #6/C:21@C#6/C:21@O 1.561 > bond length #6/C:46@CB#6/C:46@SG 1.561 > bond length #6/C:21@CB#6/C:21@SG 1.561 > bond length #6/C:33@N#6/C:33@CA 1.561 > bond length #6/C:33@CA#6/C:33@C 1.561 > bond length #6/C:13@CA#6/C:13@C 1.561 > bond length #6/C:33@CA#6/C:33@CB 1.561 > bond length #6/C:13@CA#6/C:13@CB 1.561 > bond length #6/C:33@C#6/C:33@O 1.561 > bond length #6/C:13@C#6/C:13@O 1.561 > bond length #6/C:33@CB#6/C:33@SG 1.561 > bond length #6/C:13@CB#6/C:13@SG 1.561 > bond length #6/C:17@CB#6/C:17@SG 1.571 > bond length #6/C:37@CA#6/C:37@C 1.571 > bond length #6/C:17@N#6/C:17@CA 1.571 > bond length #6/C:17@CA#6/C:17@C 1.571 > bond length #6/C:37@CA#6/C:37@CB 1.571 > bond length #6/C:17@CA#6/C:17@CB 1.571 > bond length #6/C:37@C#6/C:37@O 1.571 > bond length #6/C:17@C#6/C:17@O 1.571 > bond length #6/C:37@N#6/C:37@CA 1.571 > bond length #6/C:37@CB#6/C:37@SG 1.571 > bond length #6/C:46@N#6/C:46@CA 1.571 > bond length #6/C:21@N#6/C:21@CA 1.571 > bond length #6/C:46@CA#6/C:46@C 1.571 > bond length #6/C:21@CA#6/C:21@C 1.571 > bond length #6/C:46@CA#6/C:46@CB 1.571 > bond length #6/C:21@CA#6/C:21@CB 1.571 > bond length #6/C:13@N#6/C:13@CA 1.571 > bond length #6/C:46@C#6/C:46@O 1.571 > bond length #6/C:21@C#6/C:21@O 1.571 > bond length #6/C:46@CB#6/C:46@SG 1.571 > bond length #6/C:21@CB#6/C:21@SG 1.571 > bond length #6/C:33@N#6/C:33@CA 1.571 > bond length #6/C:33@CA#6/C:33@C 1.571 > bond length #6/C:13@CA#6/C:13@C 1.571 > bond length #6/C:33@CA#6/C:33@CB 1.571 > bond length #6/C:13@CA#6/C:13@CB 1.571 > bond length #6/C:33@C#6/C:33@O 1.571 > bond length #6/C:13@C#6/C:13@O 1.571 > bond length #6/C:33@CB#6/C:33@SG 1.571 > bond length #6/C:13@CB#6/C:13@SG 1.571 > bond length #6/C:17@CB#6/C:17@SG 1.581 > bond length #6/C:37@CA#6/C:37@C 1.581 > bond length #6/C:17@N#6/C:17@CA 1.581 > bond length #6/C:17@CA#6/C:17@C 1.581 > bond length #6/C:37@CA#6/C:37@CB 1.581 > bond length #6/C:17@CA#6/C:17@CB 1.581 > bond length #6/C:37@C#6/C:37@O 1.581 > bond length #6/C:17@C#6/C:17@O 1.581 > bond length #6/C:37@N#6/C:37@CA 1.581 > bond length #6/C:37@CB#6/C:37@SG 1.581 > bond length #6/C:46@N#6/C:46@CA 1.581 > bond length #6/C:21@N#6/C:21@CA 1.581 > bond length #6/C:46@CA#6/C:46@C 1.581 > bond length #6/C:21@CA#6/C:21@C 1.581 > bond length #6/C:46@CA#6/C:46@CB 1.581 > bond length #6/C:21@CA#6/C:21@CB 1.581 > bond length #6/C:13@N#6/C:13@CA 1.581 > bond length #6/C:46@C#6/C:46@O 1.581 > bond length #6/C:21@C#6/C:21@O 1.581 > bond length #6/C:46@CB#6/C:46@SG 1.581 > bond length #6/C:21@CB#6/C:21@SG 1.581 > bond length #6/C:33@N#6/C:33@CA 1.581 > bond length #6/C:33@CA#6/C:33@C 1.581 > bond length #6/C:13@CA#6/C:13@C 1.581 > bond length #6/C:33@CA#6/C:33@CB 1.581 > bond length #6/C:13@CA#6/C:13@CB 1.581 > bond length #6/C:33@C#6/C:33@O 1.581 > bond length #6/C:13@C#6/C:13@O 1.581 > bond length #6/C:33@CB#6/C:33@SG 1.581 > bond length #6/C:13@CB#6/C:13@SG 1.581 > bond length #6/C:17@CB#6/C:17@SG 1.591 > bond length #6/C:37@CA#6/C:37@C 1.591 > bond length #6/C:17@N#6/C:17@CA 1.591 > bond length #6/C:17@CA#6/C:17@C 1.591 > bond length #6/C:37@CA#6/C:37@CB 1.591 > bond length #6/C:17@CA#6/C:17@CB 1.591 > bond length #6/C:37@C#6/C:37@O 1.591 > bond length #6/C:17@C#6/C:17@O 1.591 > bond length #6/C:37@N#6/C:37@CA 1.591 > bond length #6/C:37@CB#6/C:37@SG 1.591 > bond length #6/C:46@N#6/C:46@CA 1.591 > bond length #6/C:21@N#6/C:21@CA 1.591 > bond length #6/C:46@CA#6/C:46@C 1.591 > bond length #6/C:21@CA#6/C:21@C 1.591 > bond length #6/C:46@CA#6/C:46@CB 1.591 > bond length #6/C:21@CA#6/C:21@CB 1.591 > bond length #6/C:13@N#6/C:13@CA 1.591 > bond length #6/C:46@C#6/C:46@O 1.591 > bond length #6/C:21@C#6/C:21@O 1.591 > bond length #6/C:46@CB#6/C:46@SG 1.591 > bond length #6/C:21@CB#6/C:21@SG 1.591 > bond length #6/C:33@N#6/C:33@CA 1.591 > bond length #6/C:33@CA#6/C:33@C 1.591 > bond length #6/C:13@CA#6/C:13@C 1.591 > bond length #6/C:33@CA#6/C:33@CB 1.591 > bond length #6/C:13@CA#6/C:13@CB 1.591 > bond length #6/C:33@C#6/C:33@O 1.591 > bond length #6/C:13@C#6/C:13@O 1.591 > bond length #6/C:33@CB#6/C:33@SG 1.591 > bond length #6/C:13@CB#6/C:13@SG 1.591 > bond length #6/C:17@CB#6/C:17@SG 1.601 > bond length #6/C:37@CA#6/C:37@C 1.601 > bond length #6/C:17@N#6/C:17@CA 1.601 > bond length #6/C:17@CA#6/C:17@C 1.601 > bond length #6/C:37@CA#6/C:37@CB 1.601 > bond length #6/C:17@CA#6/C:17@CB 1.601 > bond length #6/C:37@C#6/C:37@O 1.601 > bond length #6/C:17@C#6/C:17@O 1.601 > bond length #6/C:37@N#6/C:37@CA 1.601 > bond length #6/C:37@CB#6/C:37@SG 1.601 > bond length #6/C:46@N#6/C:46@CA 1.601 > bond length #6/C:21@N#6/C:21@CA 1.601 > bond length #6/C:46@CA#6/C:46@C 1.601 > bond length #6/C:21@CA#6/C:21@C 1.601 > bond length #6/C:46@CA#6/C:46@CB 1.601 > bond length #6/C:21@CA#6/C:21@CB 1.601 > bond length #6/C:13@N#6/C:13@CA 1.601 > bond length #6/C:46@C#6/C:46@O 1.601 > bond length #6/C:21@C#6/C:21@O 1.601 > bond length #6/C:46@CB#6/C:46@SG 1.601 > bond length #6/C:21@CB#6/C:21@SG 1.601 > bond length #6/C:33@N#6/C:33@CA 1.601 > bond length #6/C:33@CA#6/C:33@C 1.601 > bond length #6/C:13@CA#6/C:13@C 1.601 > bond length #6/C:33@CA#6/C:33@CB 1.601 > bond length #6/C:13@CA#6/C:13@CB 1.601 > bond length #6/C:33@C#6/C:33@O 1.601 > bond length #6/C:13@C#6/C:13@O 1.601 > bond length #6/C:33@CB#6/C:33@SG 1.601 > bond length #6/C:13@CB#6/C:13@SG 1.601 > bond sel Created 0 bonds > bond sel Created 0 bonds > bond sel reasonable false Created 598 bonds > ~bond sel > bond sel Created 32 bonds > hide #6.1 models > ui mousemode right select > select clear > select #6/C:46@SG 1 atom, 1 residue, 1 model selected > select add #6/C:13@SG 2 atoms, 2 residues, 1 model selected > ui tool show ""Build Structure"" > bond sel reasonable false Created 1 bond > select clear > select ~sel & ##selected Nothing selected > select #6/C 462 atoms, 473 bonds, 30 pseudobonds, 58 residues, 2 models selected > help graphics > graphics selection color black > graphics selection linewidth 2 Expected a keyword > graphics selection width 2 > graphics selection width 3 > save /Users/leightongo/Desktop/image1.png supersample 3 Desktop color scheme is dark Desktop color scheme is light > hide #!6 models > show #!1 models > select add #6 4050 atoms, 4145 bonds, 30 pseudobonds, 535 residues, 2 models selected > select subtract #6 Nothing selected > sequcence chain #1/A Unknown command: sequcence chain #1/A > sequence chain #1/A Alignment identifier is 1/A > select #1/A:48 15 atoms, 14 bonds, 1 residue, 1 model selected > select #1/A:29-48 325 atoms, 326 bonds, 20 residues, 1 model selected > color sel white Drag select of 81 residues > select up 2799 atoms, 2831 bonds, 183 residues, 1 model selected > select up 6651 atoms, 6732 bonds, 444 residues, 1 model selected > select up 9155 atoms, 9260 bonds, 612 residues, 1 model selected > hide sel cartoons > select clear > select #1/C 1722 atoms, 1741 bonds, 120 residues, 1 model selected > show sel cartoons > select ~sel & ##selected 7433 atoms, 7519 bonds, 236 pseudobonds, 492 residues, 2 models selected > select #1/A 782 atoms, 787 bonds, 48 residues, 1 model selected > show sel cartoons > select #1/C 1722 atoms, 1741 bonds, 120 residues, 1 model selected > hide sel cartoons > select #1/A:cys 40 atoms, 38 bonds, 4 residues, 1 model selected > show sel atoms > select #1/A:48 15 atoms, 14 bonds, 1 residue, 1 model selected > select #1/A:48 15 atoms, 14 bonds, 1 residue, 1 model selected > select #1/A:48 15 atoms, 14 bonds, 1 residue, 1 model selected > select #1/A:5-6 32 atoms, 32 bonds, 2 residues, 1 model selected > select #1/A:5-6 32 atoms, 32 bonds, 2 residues, 1 model selected > select #1/A:5 11 atoms, 10 bonds, 1 residue, 1 model selected > select #1/A:5 11 atoms, 10 bonds, 1 residue, 1 model selected > open /Users/leightongo/Downloads/a1procomplex_refine_026.pdb Chain information for a1procomplex_refine_026.pdb #7 --- Chain | Description A E I M | No description available B | No description available C | No description available D | No description available F | No description available G | No description available H P | No description available J | No description available K | No description available L | No description available N | No description available O | No description available 24 atoms have alternate locations. Control/examine alternate locations with Altloc Explorer [start tool...] or the altlocs command. 17904 atoms have anisotropic B-factors. Depict anisotropic information with Thermal Ellipsoids [start tool...] or the aniso command. > mmaker #7 to #1 Computing secondary structure Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 40c7_complex.pdb, chain B (#1) with a1procomplex_refine_026.pdb, chain A (#7), sequence alignment score = 1052.7 RMSD between 160 pruned atom pairs is 1.301 angstroms; (across all 219 pairs: 1.774) > select add #1 9155 atoms, 9260 bonds, 236 pseudobonds, 612 residues, 2 models selected > select subtract #1 Nothing selected > select add #7 34902 atoms, 35293 bonds, 4 pseudobonds, 2399 residues, 2 models selected > hide sel atoms > show sel cartoons > select add #6 38952 atoms, 39438 bonds, 34 pseudobonds, 2934 residues, 4 models selected > select subtract #6 34902 atoms, 35293 bonds, 4 pseudobonds, 2399 residues, 2 models selected > select add #1 44057 atoms, 44553 bonds, 240 pseudobonds, 3011 residues, 4 models selected > show sel cartoons > close #2-4#1 > close #5 > save /Users/leightongo/Desktop/40c7.cxs > select #7/A-C 8179 atoms, 8278 bonds, 1 pseudobond, 555 residues, 2 models selected > combine sel > hide #!7 models > select add #7 34902 atoms, 35293 bonds, 4 pseudobonds, 2399 residues, 2 models selected > select subtract #7 Nothing selected > hide #!1 models > show #!1 models > show #!7 models > hide #!7 models > combine #7/A-C > hide #!1 models > close #2 > show #!1 models Drag select of 370 residues > select up 6328 atoms, 6399 bonds, 429 residues, 1 model selected > select up 8666 atoms, 8772 bonds, 591 residues, 1 model selected > select up 34902 atoms, 35293 bonds, 2399 residues, 1 model selected > select down 8666 atoms, 8772 bonds, 591 residues, 1 model selected > delete sel Drag select of 249 residues > select up 5397 atoms, 5456 bonds, 368 residues, 1 model selected > select up 8329 atoms, 8429 bonds, 567 residues, 1 model selected > select up 26236 atoms, 26521 bonds, 1808 residues, 1 model selected > select down 8329 atoms, 8429 bonds, 567 residues, 1 model selected > delete sel Drag select of 36 residues > select up 548 atoms, 554 bonds, 37 residues, 1 model selected > select up 17907 atoms, 18092 bonds, 1241 residues, 1 model selected > select down 548 atoms, 554 bonds, 37 residues, 1 model selected > delete sel Drag select of 347 residues, 1 pseudobonds > select up 6512 atoms, 6589 bonds, 1 pseudobond, 432 residues, 2 models selected > select up 8718 atoms, 8823 bonds, 1 pseudobond, 590 residues, 2 models selected > delete sel Drag select of 77 residues > show sel atoms > style sel stick Changed 1139 atom styles > color sel byhetero > select #1/L:63-end 151 atoms, 152 bonds, 9 residues, 1 model selected > color sel white > color sel byhetero > select ~sel & ##selected 8490 atoms, 8563 bonds, 2 pseudobonds, 605 residues, 2 models selected > hide sel atoms > select #1/L 541 atoms, 547 bonds, 36 residues, 1 model selected > help combine > movie record > turn y 2 180 > wait 180 > movie encode /Users/leightongo/Desktop/movie1.mp4 Movie saved to /Users/leightongo/Desktop/movie1.mp4 > toolshed show Traceback (most recent call last): File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 98, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 164, in status r.draw_background() File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1238, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 98, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 164, in status r.draw_background() File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1238, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 98, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 164, in status r.draw_background() File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1238, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 98, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 164, in status r.draw_background() File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1238, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 98, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 164, in status r.draw_background() File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1238, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 98, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 164, in status r.draw_background() File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1238, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 98, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 164, in status r.draw_background() File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1238, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 98, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 164, in status r.draw_background() File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1238, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 98, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 164, in status r.draw_background() File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1238, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 98, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 164, in status r.draw_background() File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1238, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 98, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 164, in status r.draw_background() File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1238, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 98, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 164, in status r.draw_background() File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1238, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 98, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 164, in status r.draw_background() File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1238, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 98, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 164, in status r.draw_background() File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1238, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 98, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 164, in status r.draw_background() File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1238, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 98, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 164, in status r.draw_background() File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1238, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. OpenGL version: 4.1 Metal - 90.5 OpenGL renderer: Apple M1 Max OpenGL vendor: Apple Python: 3.11.9 Locale: en_US.UTF-8 Qt version: PyQt6 6.9.1, Qt 6.9.0 Qt runtime version: 6.9.2 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro18,2 Model Number: MK1A3LL/A Chip: Apple M1 Max Total Number of Cores: 10 (8 Performance and 2 Efficiency) Memory: 32 GB System Firmware Version: 18000.120.36 OS Loader Version: 18000.120.36 Software: System Software Overview: System Version: macOS 26.5 (25F71) Kernel Version: Darwin 25.5.0 Time since boot: 3 days, 3 hours, 6 minutes Graphics/Displays: Apple M1 Max: Chipset Model: Apple M1 Max Type: GPU Bus: Built-In Total Number of Cores: 32 Vendor: Apple (0x106b) Metal Support: Metal 4 Displays: DELL P2723QE: Resolution: 6016 x 3384 UI Looks like: 3008 x 1692 @ 60.00Hz Main Display: Yes Mirror: Off Online: Yes Rotation: Supported DELL P2723QE: Resolution: 3384 x 6016 UI Looks like: 1692 x 3008 @ 60.00Hz Mirror: Off Online: Yes Rotation: 90 Installed Packages: aiohappyeyeballs: 2.6.1 aiohttp: 3.13.1 aiosignal: 1.4.0 alabaster: 1.0.0 annotated-types: 0.7.0 anyio: 4.12.1 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 3.0.1 attrs: 25.4.0 babel: 2.17.0 beautifulsoup4: 4.13.5 blockdiag: 3.0.0 blosc2: 3.12.2 build: 1.3.0 certifi: 2025.7.14 cftime: 1.6.5 charset-normalizer: 3.4.4 ChimeraX-AddCharge: 1.5.20 ChimeraX-AddH: 2.2.8 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.6.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 3.1.1 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Animations: 1.0 ChimeraX-Aniso: 1.3.2 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.61.4 ChimeraX-AtomicLibrary: 14.2.1 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.3 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-Boltz: 1.1 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.2 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.6.0 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.5 ChimeraX-ChemGroup: 2.0.2 ChimeraX-Clashes: 2.3 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.8 ChimeraX-CommandLine: 1.3.0 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.11.1 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.5 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.4 ChimeraX-Dicom: 1.2.7 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.4 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FocalBlur: 0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5.3 ChimeraX-HelloWorld: 0.1 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.4 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.7.3 ChimeraX-Label: 1.2 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.2.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.2 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.2.2 ChimeraX-MCopy: 1.0 ChimeraX-MCPServer: 0.1.0 ChimeraX-MDcrds: 2.17.2 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-Minimize: 1.3.2 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.16 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.22 ChimeraX-ModelPanel: 1.6 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0.1 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.15.2 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.12 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.5 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.4 ChimeraX-ProfileGrids: 1.4.2 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.6.5 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.3 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.2 ChimeraX-Scenes: 0.3.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.3 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.10 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.17.3 ChimeraX-Shape: 1.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.1 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.19.1 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5.2 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.3 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.49.1 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.2 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDock: 1.5.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.5 ChimeraX-Zone: 1.0.1 click: 8.3.1 colorama: 0.4.6 comm: 0.2.3 contourpy: 1.3.3 coverage: 7.13.1 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.1.4 debugpy: 1.8.19 decorator: 5.2.1 docutils: 0.21.2 executing: 2.2.1 filelock: 3.19.1 fonttools: 4.61.1 frozenlist: 1.8.0 funcparserlib: 2.0.0a0 glfw: 2.10.0 grako: 3.16.5 h11: 0.16.0 h5py: 3.15.1 html2text: 2025.4.15 httpcore: 1.0.9 httpx: 0.28.1 httpx-sse: 0.4.3 idna: 3.11 ihm: 2.2 imagecodecs: 2024.6.1 imagesize: 1.4.1 iniconfig: 2.3.0 ipykernel: 6.30.1 ipython: 9.5.0 ipython_pygments_lexers: 1.1.1 ipywidgets: 8.1.8 jedi: 0.19.2 Jinja2: 3.1.6 jsonschema: 4.26.0 jsonschema-specifications: 2025.9.1 jupyter_client: 8.6.3 jupyter_core: 5.9.1 jupyterlab_widgets: 3.0.16 kiwisolver: 1.4.9 line_profiler: 5.0.0 lxml: 6.0.2 lz4: 4.3.2 Markdown: 3.8.2 MarkupSafe: 3.0.3 matplotlib: 3.10.7 matplotlib-inline: 0.2.1 mcp: 1.18.0 msgpack: 1.1.1 multidict: 6.7.0 ndindex: 1.10.1 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.14.1 numpy: 1.26.4 OpenMM: 8.2.0 openvr: 1.26.701 packaging: 25.0 ParmEd: 4.2.2 parso: 0.8.5 pep517: 0.13.1 pexpect: 4.9.0 pickleshare: 0.7.5 pillow: 11.3.0 pip: 25.2 pkginfo: 1.12.1.2 platformdirs: 4.5.1 pluggy: 1.6.0 prompt_toolkit: 3.0.52 propcache: 0.4.1 psutil: 7.0.0 ptyprocess: 0.7.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pybind11: 3.0.1 pycollada: 0.8 pydantic: 2.12.5 pydantic-settings: 2.12.0 pydantic_core: 2.41.5 pydicom: 2.4.4 Pygments: 2.18.0 pynmrstar: 3.3.6 pynrrd: 1.0.0 PyOpenGL: 3.1.10 PyOpenGL-accelerate: 3.1.10 pyopenxr: 1.1.4501 pyparsing: 3.3.2 pyproject_hooks: 1.2.0 PyQt6-commercial: 6.9.1 PyQt6-Qt6: 6.9.2 PyQt6-WebEngine-commercial: 6.9.0 PyQt6-WebEngine-Qt6: 6.9.2 PyQt6_sip: 13.10.2 pytest: 9.0.2 pytest-cov: 7.0.0 python-dateutil: 2.9.0.post0 python-dotenv: 1.2.1 python-multipart: 0.0.21 pyzmq: 27.1.0 qtconsole: 5.7.0 QtPy: 2.4.3 qtshim: 1.2 RandomWords: 0.4.0 referencing: 0.37.0 requests: 2.32.5 roman-numerals: 4.1.0 roman-numerals-py: 4.1.0 rpds-py: 0.30.0 scipy: 1.14.0 setuptools: 80.9.0 sfftk-rw: 0.8.1 six: 1.17.0 snowballstemmer: 3.0.1 sortedcontainers: 2.4.0 soupsieve: 2.8.3 Sphinx: 8.2.3 sphinx-autodoc-typehints: 3.2.0 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 sse-starlette: 3.2.0 stack-data: 0.6.3 starlette: 0.52.1 superqt: 0.7.6 tables: 3.10.2 tcia_utils: 1.5.1 tifffile: 2025.3.13 tinyarray: 1.2.5 tornado: 6.5.4 traitlets: 5.14.3 typing-inspection: 0.4.2 typing_extensions: 4.15.0 urllib3: 2.6.3 uvicorn: 0.40.0 wcwidth: 0.3.2 webcolors: 24.11.1 wheel: 0.45.1 wheel-filename: 1.4.2 widgetsnbextension: 4.0.15 yarl: 1.22.0 }}} " defect closed normal Graphics duplicate all ChimeraX