id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 20595 Session save: cannot import name 'get_session_info' from 'chimerax.md_crds.gui' rkrishnan@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: Windows-10-10.0.26100 ChimeraX Version: 1.12.dev202604040008 (2026-04-04 00:08:08 UTC) Description gave this error when i tried to save a session file after morphing two coordinate sets. Log: UCSF ChimeraX version: 1.12.dev202604040008 (2026-04-04) © 2016-2026 Regents of the University of California. All rights reserved. > open ""L:\Graphics\BCRX001\GraphicsBackup\factor_D\morphing factorD\FD- > bcx9930-8936.cxs"" format session Log from Wed Jul 8 10:13:53 2026 Startup Messages --- warning | No presets found in custom preset folder L:/Graphics/BCRX001/GraphicsBackup/yahya-babu UCSF ChimeraX version: 1.12.dev202604040008 (2026-04-04) © 2016-2026 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open L:/Graphics/BCRX001/GraphicsBackup/mar06_2026_bcx9930_factorD.pdb Summary of feedback from opening L:/Graphics/BCRX001/GraphicsBackup/mar06_2026_bcx9930_factorD.pdb --- warnings | Ignored bad PDB record found on line 22 HELIX 1 1 HIS A 57 GLU A 59A 1 Generated by MOE 4 Ignored bad PDB record found on line 23 HELIX 2 2 ARG A 165 ASN A 169 1 Generated by MOE 5 Ignored bad PDB record found on line 24 HELIX 3 3 VAL A 231 TYR A 234 5 Generated by MOE 4 Ignored bad PDB record found on line 25 HELIX 4 4 ALA A 235 LEU A 242 1 Generated by MOE 8 Ignored bad PDB record found on line 26 SHEET 1 ARG A 20 GLU A 21 Generated by MOE 14 messages similar to the above omitted Chain information for mar06_2026_bcx9930_factorD.pdb #1 --- Chain | Description A | No description available Computing secondary structure > open L:/Graphics/BCRX001/GraphicsBackup/factor_D/FD-bcx8936-xray/fd- > bcx8936-diffmap.pdb format swissdock Summary of feedback from opening L:/Graphics/BCRX001/GraphicsBackup/factor_D/FD-bcx8936-xray/fd- bcx8936-diffmap.pdb --- warnings | Ignored bad PDB record found on line 2 Ignored bad PDB record found on line 3 HELIX 1 1 HIS A 57 GLU A 60 1 Generated by MOE 4 Ignored bad PDB record found on line 4 Ignored bad PDB record found on line 5 HELIX 2 2 ASP A 61 ASP A 64 5 Generated by MOE 4 Ignored bad PDB record found on line 6 161 messages similar to the above omitted Cannot find LINK/SSBOND residue CYS (189 ) Ignored bad PDB record found on line 3818 Chain information for fd-bcx8936-diffmap.pdb #2 --- Chain | Description A | No description available Computing secondary structure > ui tool show Matchmaker > matchmaker #!2 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker mar06_2026_bcx9930_factorD.pdb, chain A (#1) with fd- bcx8936-diffmap.pdb, chain A (#2), sequence alignment score = 1116.9 RMSD between 218 pruned atom pairs is 0.562 angstroms; (across all 228 pairs: 0.978) > matchmaker #!2 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker mar06_2026_bcx9930_factorD.pdb, chain A (#1) with fd- bcx8936-diffmap.pdb, chain A (#2), sequence alignment score = 1116.9 RMSD between 218 pruned atom pairs is 0.562 angstroms; (across all 228 pairs: 0.978) > delete H > delete solvent > cd ""L:/Graphics/BCRX001/GraphicsBackup/factor_D/morphing factorD"" Current working directory is: L:\Graphics\BCRX001\GraphicsBackup\factor_D\morphing factorD > save ""L:/Graphics/BCRX001/GraphicsBackup/factor_D/morphing factorD/FD- > bcx9930-8936.cxs"" ——— End of log from Wed Jul 8 10:13:53 2026 ——— > view name session-start opened ChimeraX session > close #2.1 > help help:user > morph #2 #1 corkscrew frames 75 Expected a keyword > help help:user > morph #2 #1 method corkscrew frames 75 slider true Computed 76 frame morph #3 > coordset #3 1,76 > close #3.1 > morph #2 #1 method corkscrew frames 75 slider true colorCore cornflower blue Computed 76 frame morph #4 > coordset #4 1,76 > hide #3 models > close #4.1 > morph #2 #1 method corkscrew frames 75 slider true colorCore cornflowerblue > byhetero Expected a keyword > morph #2 #1 method corkscrew frames 75 slider true colorColor byhetero Expected a keyword > morph #2 #1 method corkscrew frames 75 slider true colorCore byhetero Invalid ""colorCore"" argument: Invalid color name or specifier > morph #2 #1 method corkscrew frames 75 slider true colorCore green Computed 76 frame morph #5 > coordset #5 1,76 > close #4 > movie record > movie encode C:\Users\Rkrishnan\Desktop\movie19.mp4 framerate 25.0 Movie saved to \C:Users\\...\Desktop\movie19.mp4 > split ligands Split mar06_2026_bcx9930_factorD.pdb (#1) into 2 models Split fd-bcx8936-diffmap.pdb (#2) into 2 models Did not split Morph - fd-bcx8936-diffmap.pdb, has only one piece [Repeated 1 time(s)] Chain information for mar06_2026_bcx9930_factorD.pdb #1.1 --- Chain | Description A | No description available Chain information for fd-bcx8936-diffmap.pdb #2.1 --- Chain | Description A | No description available > hide #!5 models > hide #!2 models > show #2.1 models > hide #2.1 models > cd ""L:/Graphics/BCRX001/GraphicsBackup/factor_D/morphing factorD"" Current working directory is: L:\Graphics\BCRX001\GraphicsBackup\factor_D\morphing factorD > show #!5 models > close #5.1 > save ""L:/Graphics/BCRX001/GraphicsBackup/factor_D/morphing factorD/FD- > bcx9930-8936-jul08A.cxs"" Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\core\session.py"", line 322, in process data = sm.take_snapshot(obj, session, self.state_flags) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\std_commands\coordset_gui.py"", line 112, in take_snapshot from chimerax.md_crds.gui import get_session_info ImportError: cannot import name 'get_session_info' from 'chimerax.md_crds.gui' (C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\md_crds\gui.py) The above exception was the direct cause of the following exception: Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\core\session.py"", line 297, in discovery self.processed[key] = self.process(obj, parents) ^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\core\session.py"", line 329, in process raise RuntimeError(msg) from e RuntimeError: Error while saving session data for 'tools' -> [, , , , , , ] -> During handling of the above exception, another exception occurred: Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\core\session.py"", line 1048, in save session.save(output, version=version, include_maps=include_maps) File ""C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\core\session.py"", line 731, in save mgr.discovery(self._state_containers) File ""C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\core\session.py"", line 301, in discovery raise ValueError( ValueError: error processing: 'tools' -> [, , , , , , ] -> : Error while saving session data for 'tools' -> [, , , , , , ] -> ValueError: error processing: 'tools' -> [, , , , , , ] -> : Error while saving session data for 'tools' -> [, , , , , , ] -> File ""C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\core\session.py"", line 301, in discovery raise ValueError( See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\core\session.py"", line 322, in process data = sm.take_snapshot(obj, session, self.state_flags) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\std_commands\coordset_gui.py"", line 112, in take_snapshot from chimerax.md_crds.gui import get_session_info ImportError: cannot import name 'get_session_info' from 'chimerax.md_crds.gui' (C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\md_crds\gui.py) The above exception was the direct cause of the following exception: Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\core\session.py"", line 297, in discovery self.processed[key] = self.process(obj, parents) ^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\core\session.py"", line 329, in process raise RuntimeError(msg) from e RuntimeError: Error while saving session data for 'tools' -> [, , , , , , ] -> During handling of the above exception, another exception occurred: Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\save_command\dialog.py"", line 133, in lambda *args, ses=session: show_save_file_dialog(ses), tool_tip=""Save output file"", ^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\save_command\dialog.py"", line 144, in show_save_file_dialog _dlg.display(session, **kw) File ""C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\save_command\dialog.py"", line 68, in display run(session, cmd) File ""C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\core\commands\run.py"", line 49, in run results = command.run(text, log=log, return_json=return_json) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\core\commands\cli.py"", line 3245, in run result = ci.function(session, **kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\save_command\cmd.py"", line 86, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File ""C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\core\commands\cli.py"", line 3245, in run result = ci.function(session, **kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\save_command\cmd.py"", line 101, in provider_save saver_info.save(session, path, **provider_kw) File ""C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\core_formats\\__init__.py"", line 95, in save return cxs_save(session, path, **kw) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\core\session.py"", line 1048, in save session.save(output, version=version, include_maps=include_maps) File ""C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\core\session.py"", line 731, in save mgr.discovery(self._state_containers) File ""C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\core\session.py"", line 301, in discovery raise ValueError( ValueError: error processing: 'tools' -> [, , , , , , ] -> : Error while saving session data for 'tools' -> [, , , , , , ] -> ValueError: error processing: 'tools' -> [, , , , , , ] -> : Error while saving session data for 'tools' -> [, , , , , , ] -> File ""C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\core\session.py"", line 301, in discovery raise ValueError( See log for complete Python traceback. > close #3,5 > show #1.1 models > show #2.2 models > save ""L:/Graphics/BCRX001/GraphicsBackup/factor_D/morphing factorD/FD- > bcx9930-8936a.cxs"" > morph #1 #2 models have different number of chains, 1 (Morph - mar06_2026_bcx9930_factorD.pdb #/A) and 0 () > morph #1.1 #2.1 Computed 51 frame morph #3 > coordset #3 1,51 > save ""L:/Graphics/BCRX001/GraphicsBackup/factor_D/morphing factorD/FD- > bcx9930-8936b.cxs"" Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\core\session.py"", line 322, in process data = sm.take_snapshot(obj, session, self.state_flags) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\std_commands\coordset_gui.py"", line 112, in take_snapshot from chimerax.md_crds.gui import get_session_info ImportError: cannot import name 'get_session_info' from 'chimerax.md_crds.gui' (C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\md_crds\gui.py) The above exception was the direct cause of the following exception: Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\core\session.py"", line 297, in discovery self.processed[key] = self.process(obj, parents) ^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\core\session.py"", line 329, in process raise RuntimeError(msg) from e RuntimeError: Error while saving session data for 'tools' -> [, , , , , ] -> During handling of the above exception, another exception occurred: Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\core\session.py"", line 1048, in save session.save(output, version=version, include_maps=include_maps) File ""C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\core\session.py"", line 731, in save mgr.discovery(self._state_containers) File ""C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\core\session.py"", line 301, in discovery raise ValueError( ValueError: error processing: 'tools' -> [, , , , , ] -> : Error while saving session data for 'tools' -> [, , , , , ] -> ValueError: error processing: 'tools' -> [, , , , , ] -> : Error while saving session data for 'tools' -> [, , , , , ] -> File ""C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\core\session.py"", line 301, in discovery raise ValueError( See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\core\session.py"", line 322, in process data = sm.take_snapshot(obj, session, self.state_flags) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\std_commands\coordset_gui.py"", line 112, in take_snapshot from chimerax.md_crds.gui import get_session_info ImportError: cannot import name 'get_session_info' from 'chimerax.md_crds.gui' (C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\md_crds\gui.py) The above exception was the direct cause of the following exception: Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\core\session.py"", line 297, in discovery self.processed[key] = self.process(obj, parents) ^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\core\session.py"", line 329, in process raise RuntimeError(msg) from e RuntimeError: Error while saving session data for 'tools' -> [, , , , , ] -> During handling of the above exception, another exception occurred: Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\save_command\dialog.py"", line 133, in lambda *args, ses=session: show_save_file_dialog(ses), tool_tip=""Save output file"", ^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\save_command\dialog.py"", line 144, in show_save_file_dialog _dlg.display(session, **kw) File ""C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\save_command\dialog.py"", line 68, in display run(session, cmd) File ""C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\core\commands\run.py"", line 49, in run results = command.run(text, log=log, return_json=return_json) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\core\commands\cli.py"", line 3245, in run result = ci.function(session, **kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\save_command\cmd.py"", line 86, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File ""C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\core\commands\cli.py"", line 3245, in run result = ci.function(session, **kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\save_command\cmd.py"", line 101, in provider_save saver_info.save(session, path, **provider_kw) File ""C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\core_formats\\__init__.py"", line 95, in save return cxs_save(session, path, **kw) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\core\session.py"", line 1048, in save session.save(output, version=version, include_maps=include_maps) File ""C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\core\session.py"", line 731, in save mgr.discovery(self._state_containers) File ""C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\core\session.py"", line 301, in discovery raise ValueError( ValueError: error processing: 'tools' -> [, , , , , ] -> : Error while saving session data for 'tools' -> [, , , , , ] -> ValueError: error processing: 'tools' -> [, , , , , ] -> : Error while saving session data for 'tools' -> [, , , , , ] -> File ""C:\Program Files\ChimeraX 1.12.dev202604040008\bin\Lib\site- packages\chimerax\core\session.py"", line 301, in discovery raise ValueError( See log for complete Python traceback. OpenGL version: 3.3.0 NVIDIA 596.51 OpenGL renderer: NVIDIA RTX 4500 Ada Generation/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation Python: 3.11.9 Locale: en_US.cp1252 Qt version: PySide6 6.10.1, Qt 6.10.1 Qt runtime version: 6.10.1 Qt platform: windows Manufacturer: LENOVO Model: 30GUSJKD00 OS: Microsoft Windows 11 Pro (Build 26100) Memory: 68,333,514,752 MaxProcessMemory: 137,438,953,344 CPU: 28 Intel(R) Core(TM) i7-14700 OSLanguage: en-US Installed Packages: accessible-pygments: 0.0.5 aiohappyeyeballs: 2.6.1 aiohttp: 3.13.1 aiosignal: 1.4.0 alabaster: 1.0.0 annotated-types: 0.7.0 anyio: 4.13.0 appdirs: 1.4.4 asttokens: 3.0.1 attrs: 26.1.0 babel: 2.18.0 beautifulsoup4: 4.13.5 blockdiag: 3.0.0 blosc2: 4.1.2 build: 1.3.0 certifi: 2026.2.25 cftime: 1.6.5 charset-normalizer: 3.4.7 ChimeraX-AddCharge: 1.5.20 ChimeraX-AddH: 2.2.8 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.6.2 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 3.2 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Animations: 1.0 ChimeraX-Aniso: 1.3.2 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.67 ChimeraX-AtomicLibrary: 14.4 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.3 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-Boltz: 1.1 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.2 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.6.0 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4.1 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.5 ChimeraX-ChemGroup: 2.0.2 ChimeraX-Clashes: 2.3 ChimeraX-Cluster: 1.0 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.8 ChimeraX-CommandLine: 1.3.1 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.12.dev202604040008 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.5 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.4 ChimeraX-Dicom: 1.2.7 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.2.1 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5.3 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.4 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.8.2 ChimeraX-Label: 1.3 ChimeraX-LightingGUI: 1.0 ChimeraX-ListInfo: 1.3.1 ChimeraX-Log: 1.2.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.2 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.3 ChimeraX-MCopy: 1.0 ChimeraX-MCPServer: 0.2.0 ChimeraX-MDcrds: 2.19 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-Minimize: 1.3.8 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.16 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.23 ChimeraX-ModelPanel: 1.6.1 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0.1 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.15.4 ChimeraX-OpenFold: 1.0 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.13 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.5 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.4 ChimeraX-ProfileGrids: 1.5.3 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.8.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.3 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.2 ChimeraX-Scenes: 0.3.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.3 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.12 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.18 ChimeraX-Shape: 1.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.1 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SNFG: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.19.3 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5.3 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.3 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.50.4 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.2 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDock: 1.6.1 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.5 ChimeraX-Zone: 1.0.1 click: 8.3.2 colorama: 0.4.6 comm: 0.2.3 comtypes: 1.4.11 contourpy: 1.3.3 coverage: 7.13.5 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.2.4 debugpy: 1.8.20 decorator: 5.2.1 docutils: 0.21.2 executing: 2.2.1 filelock: 3.19.1 fonttools: 4.62.1 frozenlist: 1.8.0 funcparserlib: 2.0.0a0 glfw: 2.10.0 grako: 3.16.5 h11: 0.16.0 h5py: 3.16.0 html2text: 2025.4.15 httpcore: 1.0.9 httpx: 0.28.1 httpx-sse: 0.4.3 idna: 3.11 ihm: 2.2 imagecodecs: 2024.6.1 imagesize: 2.0.0 iniconfig: 2.3.0 ipykernel: 7.1.0 ipython: 9.9.0 ipython_pygments_lexers: 1.1.1 ipywidgets: 8.1.8 jedi: 0.19.2 Jinja2: 3.1.6 jsonschema: 4.26.0 jsonschema-specifications: 2025.9.1 jupyter_client: 8.8.0 jupyter_core: 5.9.1 jupyterlab_widgets: 3.0.16 kiwisolver: 1.5.0 line_profiler: 5.0.0 lxml: 6.0.2 lz4: 4.3.2 Markdown: 3.8.2 MarkupSafe: 3.0.3 matplotlib: 3.10.7 matplotlib-inline: 0.2.1 mcp: 1.18.0 msgpack: 1.1.1 multidict: 6.7.1 ndindex: 1.10.1 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.14.1 numpy: 1.26.4 nvidia-nvjitlink-cu12: 12.9.86 OpenMM: 8.4.0 OpenMM-CUDA-12: 8.4.0 openvr: 1.26.701 packaging: 25.0 ParmEd: 4.2.2 parso: 0.8.6 pep517: 0.13.1 pickleshare: 0.7.5 pillow: 11.3.0 pip: 25.2 pkginfo: 1.12.1.2 platformdirs: 4.9.4 pluggy: 1.6.0 prompt_toolkit: 3.0.52 propcache: 0.4.1 psutil: 7.0.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pybind11: 3.0.1 pycollada: 0.8 pydantic: 2.12.5 pydantic-settings: 2.13.1 pydantic_core: 2.41.5 pydata-sphinx-theme: 0.17.0 pydicom: 2.4.4 Pygments: 2.18.0 pynmrstar: 3.5.0 pynrrd: 1.0.0 PyOpenGL: 3.1.10 PyOpenGL-accelerate: 3.1.10 pyopenxr: 1.1.4501 pyparsing: 3.3.2 pyproject_hooks: 1.2.0 PySide6: 6.10.1 PySide6_Addons: 6.10.1 PySide6_Essentials: 6.10.1 pytest: 9.0.2 pytest-cov: 7.1.0 python-dateutil: 2.9.0.post0 python-dotenv: 1.2.2 python-multipart: 0.0.22 pywin32: 311 pyzmq: 27.1.0 qtconsole: 5.7.0 QtPy: 2.4.3 qtshim: 1.2.2 RandomWords: 0.4.0 referencing: 0.37.0 requests: 2.32.5 roman-numerals: 4.1.0 rpds-py: 0.30.0 scipy: 1.14.0 setuptools: 80.9.0 sfftk-rw: 0.8.1 shiboken6: 6.10.1 six: 1.17.0 snowballstemmer: 3.0.1 sortedcontainers: 2.4.0 soupsieve: 2.8.3 Sphinx: 9.0.4 sphinx-autodoc-typehints: 3.6.1 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 sse-starlette: 3.3.4 stack-data: 0.6.3 starlette: 1.0.0 superqt: 0.7.6 tables: 3.10.2 tcia_utils: 1.5.1 tifffile: 2025.3.13 tinyarray: 1.2.5 tornado: 6.5.5 traitlets: 5.14.3 typing-inspection: 0.4.2 typing_extensions: 4.15.0 tzdata: 2026.1 urllib3: 2.6.3 uvicorn: 0.43.0 wcwidth: 0.6.0 webcolors: 24.11.1 wheel: 0.45.1 wheel-filename: 1.4.2 widgetsnbextension: 4.0.15 WMI: 1.5.1 yarl: 1.23.0 }}} " defect closed normal Sessions duplicate all ChimeraX