id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 20808 Mol2 output: both 'atoms' and 'models' specified chimerax-bug-report@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: Windows-10-10.0.26200 ChimeraX Version: 1.12 (2026-06-12 03:42:34 UTC) Description Replace this text with list of actions that caused this problem to occur Log: UCSF ChimeraX version: 1.12 (2026-06-12) © 2016-2026 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open C:\Users\lualg\Desktop\prj2\4XYF.cif format mmcif 4XYF.cif title: Crystal structure of c-Met in complex with (S)-5-(8-fluoro-3-(1-(3-(2-methoxyethoxy)quinolin-6-yl)ethyl)-[1,2,4]triazolo[4,3-a]pyridin-6-yl)-3-methylisoxazole [more info...] Chain information for 4XYF.cif #1 --- Chain | Description | UniProt A | Hepatocyte growth factor receptor | MET_HUMAN 1048-1351 Non-standard residues in 4XYF.cif #1 --- 44X — 6-{(1S)-1-[8-fluoro-6-(3-methyl-1,2-oxazol-5-yl)[1,2,4]triazolo[4,3-a]pyridin-3-yl]ethyl}-3-(2-methoxyethoxy)quinoline 14 atoms have alternate locations. Control/examine alternate locations with Altloc Explorer [start tool...] or the altlocs command. > save C:/Users/lualg/Desktop/prj2/cmet.cxs > show sel > select ligand 33 atoms, 37 bonds, 1 residue, 1 model selected > ùshow sel Unknown command: ùshow sel > show sel > select zone /A:1401 5 Selected 99 atoms > select zone /A:1401 5 Selected 99 atoms > label sel > save C:/Users/lualg/Desktop/prj2/4XYF_analysis.cxs > select zone /A:1401 5 Selected 99 atoms, 1 surfaces > info selection atom id /A:1084@CA idatm_type C3 atom id /A:1084@C idatm_type C2 atom id /A:1084@O idatm_type O2 atom id /A:1084@CB idatm_type C3 atom id /A:1084@CG1 idatm_type C3 atom id /A:1084@CG2 idatm_type C3 atom id /A:1084@CD1 idatm_type C3 atom id /A:1086@O idatm_type O2 atom id /A:1092@CB idatm_type C3 atom id /A:1092@CG1 idatm_type C3 atom id /A:1092@CG2 idatm_type C3 atom id /A:1108@CA idatm_type C3 atom id /A:1108@CB idatm_type C3 atom id /A:1110@CB idatm_type C3 atom id /A:1110@CG idatm_type C3 atom id /A:1110@CD idatm_type C3 atom id /A:1140@CD2 idatm_type C3 atom id /A:1157@CB idatm_type C3 atom id /A:1157@CG idatm_type C3 atom id /A:1157@CD2 idatm_type C3 atom id /A:1158@C idatm_type C2 atom id /A:1158@O idatm_type O2 atom id /A:1159@CA idatm_type C3 atom id /A:1159@C idatm_type C2 atom id /A:1159@CB idatm_type C3 atom id /A:1159@CG idatm_type Car atom id /A:1159@CD1 idatm_type Car atom id /A:1159@CD2 idatm_type Car atom id /A:1159@CE1 idatm_type Car atom id /A:1159@CE2 idatm_type Car atom id /A:1159@CZ idatm_type Car atom id /A:1159@OH idatm_type O3 atom id /A:1160@N idatm_type Npl atom id /A:1160@CA idatm_type C3 atom id /A:1160@C idatm_type C2 atom id /A:1160@O idatm_type O2 atom id /A:1160@CB idatm_type C3 atom id /A:1160@CG idatm_type C3 atom id /A:1161@N idatm_type Npl atom id /A:1161@C idatm_type C2 atom id /A:1161@O idatm_type O2 atom id /A:1162@CA idatm_type C3 atom id /A:1162@C idatm_type C2 atom id /A:1162@O idatm_type O2 atom id /A:1163@N idatm_type Npl atom id /A:1163@CA idatm_type C3 atom id /A:1164@CB idatm_type C3 atom id /A:1164@CG idatm_type Cac atom id /A:1164@OD1 idatm_type O2- atom id /A:1164@OD2 idatm_type O2- atom id /A:1167@CG idatm_type C2 atom id /A:1167@ND2 idatm_type Npl atom id /A:1208@C idatm_type C2 atom id /A:1208@O idatm_type O2 atom id /A:1209@N idatm_type Npl atom id /A:1209@CA idatm_type C3 atom id /A:1209@C idatm_type C2 atom id /A:1209@O idatm_type O2 atom id /A:1209@CB idatm_type C3 atom id /A:1209@CG idatm_type C2 atom id /A:1209@OD1 idatm_type O2 atom id /A:1210@N idatm_type Npl atom id /A:1210@CA idatm_type C3 atom id /A:1210@C idatm_type C2 atom id /A:1210@O idatm_type O2 atom id /A:1211@CG idatm_type C3 atom id /A:1211@SD idatm_type S3 atom id /A:1211@CE idatm_type C3 atom id /A:1221@N idatm_type Npl atom id /A:1221@CA idatm_type C3 atom id /A:1221@C idatm_type C2 atom id /A:1221@O idatm_type O2 atom id /A:1221@CB idatm_type C3 atom id /A:1222@N idatm_type Npl atom id /A:1222@CA idatm_type C3 atom id /A:1222@CB idatm_type C3 atom id /A:1222@CG idatm_type Cac atom id /A:1222@OD1 idatm_type O2- atom id /A:1226@CA idatm_type C3 atom id /A:1226@C idatm_type C2 atom id /A:1226@O idatm_type O2 atom id /A:1226@CB idatm_type C3 atom id /A:1230@CA idatm_type C3 atom id /A:1230@C idatm_type C2 atom id /A:1230@O idatm_type O2 atom id /A:1230@CB idatm_type C3 atom id /A:1230@CG idatm_type Car atom id /A:1230@CD1 idatm_type Car atom id /A:1230@CD2 idatm_type Car atom id /A:1230@CE1 idatm_type Car atom id /A:1230@CE2 idatm_type Car atom id /A:1230@CZ idatm_type Car atom id /A:1230@OH idatm_type O3 atom id /A:1608@O idatm_type O3 atom id /A:1609@O idatm_type O3 atom id /A:1628@O idatm_type O3 atom id /A:1662@O idatm_type O3 atom id /A:1668@O idatm_type O3 atom id /A:1699@O idatm_type O3 > hide atoms > select /A:1401 33 atoms, 37 bonds, 1 residue, 1 model selected > show sel > hide sel cartoons [Repeated 1 time(s)] > hide sel atoms > hide sel cartoons > show sel cartoons > show sel atoms > select zone /A:1401 5 Selected 99 atoms, 1 surfaces > show sel > info residues residue id /A:1052 name HIS index 4 residue id /A:1053 name ILE index 5 residue id /A:1054 name ASP index 6 residue id /A:1055 name LEU index 7 residue id /A:1056 name SER index 8 residue id /A:1057 name ALA index 9 residue id /A:1058 name LEU index 10 residue id /A:1059 name ASN index 11 residue id /A:1060 name PRO index 12 residue id /A:1061 name GLU index 13 residue id /A:1062 name LEU index 14 residue id /A:1063 name VAL index 15 residue id /A:1064 name GLN index 16 residue id /A:1065 name ALA index 17 residue id /A:1066 name VAL index 18 residue id /A:1067 name GLN index 19 residue id /A:1068 name HIS index 20 residue id /A:1069 name VAL index 21 residue id /A:1070 name VAL index 22 residue id /A:1071 name ILE index 23 residue id /A:1072 name GLY index 24 residue id /A:1073 name PRO index 25 residue id /A:1074 name SER index 26 residue id /A:1075 name SER index 27 residue id /A:1076 name LEU index 28 residue id /A:1077 name ILE index 29 residue id /A:1078 name VAL index 30 residue id /A:1079 name HIS index 31 residue id /A:1080 name PHE index 32 residue id /A:1081 name ASN index 33 residue id /A:1082 name GLU index 34 residue id /A:1083 name VAL index 35 residue id /A:1084 name ILE index 36 residue id /A:1085 name GLY index 37 residue id /A:1086 name ARG index 38 residue id /A:1087 name GLY index 39 residue id /A:1088 name HIS index 40 residue id /A:1089 name PHE index 41 residue id /A:1090 name GLY index 42 residue id /A:1091 name CYS index 43 residue id /A:1092 name VAL index 44 residue id /A:1093 name TYR index 45 residue id /A:1094 name HIS index 46 residue id /A:1095 name GLY index 47 residue id /A:1096 name THR index 48 residue id /A:1097 name LEU index 49 residue id /A:1098 name LEU index 50 residue id /A:1104 name LYS index 56 residue id /A:1105 name ILE index 57 residue id /A:1106 name HIS index 58 residue id /A:1107 name CYS index 59 residue id /A:1108 name ALA index 60 residue id /A:1109 name VAL index 61 residue id /A:1110 name LYS index 62 residue id /A:1111 name SER index 63 residue id /A:1112 name LEU index 64 residue id /A:1113 name ASN index 65 residue id /A:1114 name ARG index 66 residue id /A:1115 name ILE index 67 residue id /A:1116 name THR index 68 residue id /A:1117 name ASP index 69 residue id /A:1118 name ILE index 70 residue id /A:1119 name GLY index 71 residue id /A:1120 name GLU index 72 residue id /A:1121 name VAL index 73 residue id /A:1122 name SER index 74 residue id /A:1123 name GLN index 75 residue id /A:1124 name PHE index 76 residue id /A:1125 name LEU index 77 residue id /A:1126 name THR index 78 residue id /A:1127 name GLU index 79 residue id /A:1128 name GLY index 80 residue id /A:1129 name ILE index 81 residue id /A:1130 name ILE index 82 residue id /A:1131 name MET index 83 residue id /A:1132 name LYS index 84 residue id /A:1133 name ASP index 85 residue id /A:1134 name PHE index 86 residue id /A:1135 name SER index 87 residue id /A:1136 name HIS index 88 residue id /A:1137 name PRO index 89 residue id /A:1138 name ASN index 90 residue id /A:1139 name VAL index 91 residue id /A:1140 name LEU index 92 residue id /A:1141 name SER index 93 residue id /A:1142 name LEU index 94 residue id /A:1143 name LEU index 95 residue id /A:1144 name GLY index 96 residue id /A:1145 name ILE index 97 residue id /A:1146 name CYS index 98 residue id /A:1147 name LEU index 99 residue id /A:1148 name ARG index 100 residue id /A:1149 name SER index 101 residue id /A:1150 name GLU index 102 residue id /A:1151 name GLY index 103 residue id /A:1152 name SER index 104 residue id /A:1153 name PRO index 105 residue id /A:1154 name LEU index 106 residue id /A:1155 name VAL index 107 residue id /A:1156 name VAL index 108 residue id /A:1157 name LEU index 109 residue id /A:1158 name PRO index 110 residue id /A:1159 name TYR index 111 residue id /A:1160 name MET index 112 residue id /A:1161 name LYS index 113 residue id /A:1162 name HIS index 114 residue id /A:1163 name GLY index 115 residue id /A:1164 name ASP index 116 residue id /A:1165 name LEU index 117 residue id /A:1166 name ARG index 118 residue id /A:1167 name ASN index 119 residue id /A:1168 name PHE index 120 residue id /A:1169 name ILE index 121 residue id /A:1170 name ARG index 122 residue id /A:1171 name ASN index 123 residue id /A:1172 name GLU index 124 residue id /A:1173 name THR index 125 residue id /A:1174 name HIS index 126 residue id /A:1175 name ASN index 127 residue id /A:1176 name PRO index 128 residue id /A:1177 name THR index 129 residue id /A:1178 name VAL index 130 residue id /A:1179 name LYS index 131 residue id /A:1180 name ASP index 132 residue id /A:1181 name LEU index 133 residue id /A:1182 name ILE index 134 residue id /A:1183 name GLY index 135 residue id /A:1184 name PHE index 136 residue id /A:1185 name GLY index 137 residue id /A:1186 name LEU index 138 residue id /A:1187 name GLN index 139 residue id /A:1188 name VAL index 140 residue id /A:1189 name ALA index 141 residue id /A:1190 name LYS index 142 residue id /A:1191 name GLY index 143 residue id /A:1192 name MET index 144 residue id /A:1193 name LYS index 145 residue id /A:1194 name TYR index 146 residue id /A:1195 name LEU index 147 residue id /A:1196 name ALA index 148 residue id /A:1197 name SER index 149 residue id /A:1198 name LYS index 150 residue id /A:1199 name LYS index 151 residue id /A:1200 name PHE index 152 residue id /A:1201 name VAL index 153 residue id /A:1202 name HIS index 154 residue id /A:1203 name ARG index 155 residue id /A:1204 name ASP index 156 residue id /A:1205 name LEU index 157 residue id /A:1206 name ALA index 158 residue id /A:1207 name ALA index 159 residue id /A:1208 name ARG index 160 residue id /A:1209 name ASN index 161 residue id /A:1210 name CYS index 162 residue id /A:1211 name MET index 163 residue id /A:1212 name LEU index 164 residue id /A:1213 name ASP index 165 residue id /A:1214 name GLU index 166 residue id /A:1215 name LYS index 167 residue id /A:1216 name PHE index 168 residue id /A:1217 name THR index 169 residue id /A:1218 name VAL index 170 residue id /A:1219 name LYS index 171 residue id /A:1220 name VAL index 172 residue id /A:1221 name ALA index 173 residue id /A:1222 name ASP index 174 residue id /A:1223 name PHE index 175 residue id /A:1224 name GLY index 176 residue id /A:1225 name LEU index 177 residue id /A:1226 name ALA index 178 residue id /A:1227 name ARG index 179 residue id /A:1228 name ASP index 180 residue id /A:1229 name MET index 181 residue id /A:1230 name TYR index 182 residue id /A:1231 name ASP index 183 residue id /A:1232 name LYS index 184 residue id /A:1233 name GLU index 185 residue id /A:1234 name TYR index 186 residue id /A:1235 name TYR index 187 residue id /A:1236 name SER index 188 residue id /A:1237 name VAL index 189 residue id /A:1238 name HIS index 190 residue id /A:1239 name ASN index 191 residue id /A:1240 name LYS index 192 residue id /A:1241 name THR index 193 residue id /A:1242 name GLY index 194 residue id /A:1243 name ALA index 195 residue id /A:1244 name LYS index 196 residue id /A:1245 name LEU index 197 residue id /A:1246 name PRO index 198 residue id /A:1247 name VAL index 199 residue id /A:1248 name LYS index 200 residue id /A:1249 name TRP index 201 residue id /A:1250 name MET index 202 residue id /A:1251 name ALA index 203 residue id /A:1252 name LEU index 204 residue id /A:1253 name GLU index 205 residue id /A:1254 name SER index 206 residue id /A:1255 name LEU index 207 residue id /A:1256 name GLN index 208 residue id /A:1257 name THR index 209 residue id /A:1258 name GLN index 210 residue id /A:1259 name LYS index 211 residue id /A:1260 name PHE index 212 residue id /A:1261 name THR index 213 residue id /A:1262 name THR index 214 residue id /A:1263 name LYS index 215 residue id /A:1264 name SER index 216 residue id /A:1265 name ASP index 217 residue id /A:1266 name VAL index 218 residue id /A:1267 name TRP index 219 residue id /A:1268 name SER index 220 residue id /A:1269 name PHE index 221 residue id /A:1270 name GLY index 222 residue id /A:1271 name VAL index 223 residue id /A:1272 name LEU index 224 residue id /A:1273 name LEU index 225 residue id /A:1274 name TRP index 226 residue id /A:1275 name GLU index 227 residue id /A:1276 name LEU index 228 residue id /A:1277 name MET index 229 residue id /A:1278 name THR index 230 residue id /A:1279 name ARG index 231 residue id /A:1280 name GLY index 232 residue id /A:1281 name ALA index 233 residue id /A:1282 name PRO index 234 residue id /A:1283 name PRO index 235 residue id /A:1284 name TYR index 236 residue id /A:1285 name PRO index 237 residue id /A:1286 name ASP index 238 residue id /A:1287 name VAL index 239 residue id /A:1288 name ASN index 240 residue id /A:1289 name THR index 241 residue id /A:1290 name PHE index 242 residue id /A:1291 name ASP index 243 residue id /A:1292 name ILE index 244 residue id /A:1293 name THR index 245 residue id /A:1294 name VAL index 246 residue id /A:1295 name TYR index 247 residue id /A:1296 name LEU index 248 residue id /A:1297 name LEU index 249 residue id /A:1298 name GLN index 250 residue id /A:1299 name GLY index 251 residue id /A:1300 name ARG index 252 residue id /A:1301 name ARG index 253 residue id /A:1302 name LEU index 254 residue id /A:1303 name LEU index 255 residue id /A:1304 name GLN index 256 residue id /A:1305 name PRO index 257 residue id /A:1306 name GLU index 258 residue id /A:1307 name TYR index 259 residue id /A:1308 name CYS index 260 residue id /A:1309 name PRO index 261 residue id /A:1310 name ASP index 262 residue id /A:1311 name PRO index 263 residue id /A:1312 name LEU index 264 residue id /A:1313 name TYR index 265 residue id /A:1314 name GLU index 266 residue id /A:1315 name VAL index 267 residue id /A:1316 name MET index 268 residue id /A:1317 name LEU index 269 residue id /A:1318 name LYS index 270 residue id /A:1319 name CYS index 271 residue id /A:1320 name TRP index 272 residue id /A:1321 name HIS index 273 residue id /A:1322 name PRO index 274 residue id /A:1323 name LYS index 275 residue id /A:1324 name ALA index 276 residue id /A:1325 name GLU index 277 residue id /A:1326 name MET index 278 residue id /A:1327 name ARG index 279 residue id /A:1328 name PRO index 280 residue id /A:1329 name SER index 281 residue id /A:1330 name PHE index 282 residue id /A:1331 name SER index 283 residue id /A:1332 name GLU index 284 residue id /A:1333 name LEU index 285 residue id /A:1334 name VAL index 286 residue id /A:1335 name SER index 287 residue id /A:1336 name ARG index 288 residue id /A:1337 name ILE index 289 residue id /A:1338 name SER index 290 residue id /A:1339 name ALA index 291 residue id /A:1340 name ILE index 292 residue id /A:1341 name PHE index 293 residue id /A:1342 name SER index 294 residue id /A:1343 name THR index 295 residue id /A:1344 name PHE index 296 residue id /A:1345 name ILE index 297 residue id /A:1346 name GLY index 298 residue id /A:1401 name 44X residue id /A:1501 name HOH residue id /A:1502 name HOH residue id /A:1503 name HOH residue id /A:1504 name HOH residue id /A:1505 name HOH residue id /A:1506 name HOH residue id /A:1507 name HOH residue id /A:1508 name HOH residue id /A:1509 name HOH residue id /A:1510 name HOH residue id /A:1511 name HOH residue id /A:1512 name HOH residue id /A:1513 name HOH residue id /A:1514 name HOH residue id /A:1515 name HOH residue id /A:1516 name HOH residue id /A:1517 name HOH residue id /A:1518 name HOH residue id /A:1519 name HOH residue id /A:1520 name HOH residue id /A:1521 name HOH residue id /A:1522 name HOH residue id /A:1523 name HOH residue id /A:1524 name HOH residue id /A:1525 name HOH residue id /A:1526 name HOH residue id /A:1527 name HOH residue id /A:1528 name HOH residue id /A:1529 name HOH residue id /A:1530 name HOH residue id /A:1531 name HOH residue id /A:1532 name HOH residue id /A:1533 name HOH residue id /A:1534 name HOH residue id /A:1535 name HOH residue id /A:1536 name HOH residue id /A:1537 name HOH residue id /A:1538 name HOH residue id /A:1539 name HOH residue id /A:1540 name HOH residue id /A:1541 name HOH residue id /A:1542 name HOH residue id /A:1543 name HOH residue id /A:1544 name HOH residue id /A:1545 name HOH residue id /A:1546 name HOH residue id /A:1547 name HOH residue id /A:1548 name HOH residue id /A:1549 name HOH residue id /A:1550 name HOH residue id /A:1551 name HOH residue id /A:1552 name HOH residue id /A:1553 name HOH residue id /A:1554 name HOH residue id /A:1555 name HOH residue id /A:1556 name HOH residue id /A:1557 name HOH residue id /A:1558 name HOH residue id /A:1559 name HOH residue id /A:1560 name HOH residue id /A:1561 name HOH residue id /A:1562 name HOH residue id /A:1563 name HOH residue id /A:1564 name HOH residue id /A:1565 name HOH residue id /A:1566 name HOH residue id /A:1567 name HOH residue id /A:1568 name HOH residue id /A:1569 name HOH residue id /A:1570 name HOH residue id /A:1571 name HOH residue id /A:1572 name HOH residue id /A:1573 name HOH residue id /A:1574 name HOH residue id /A:1575 name HOH residue id /A:1576 name HOH residue id /A:1577 name HOH residue id /A:1578 name HOH residue id /A:1579 name HOH residue id /A:1580 name HOH residue id /A:1581 name HOH residue id /A:1582 name HOH residue id /A:1583 name HOH residue id /A:1584 name HOH residue id /A:1585 name HOH residue id /A:1586 name HOH residue id /A:1587 name HOH residue id /A:1588 name HOH residue id /A:1589 name HOH residue id /A:1590 name HOH residue id /A:1591 name HOH residue id /A:1592 name HOH residue id /A:1593 name HOH residue id /A:1594 name HOH residue id /A:1595 name HOH residue id /A:1596 name HOH residue id /A:1597 name HOH residue id /A:1598 name HOH residue id /A:1599 name HOH residue id /A:1600 name HOH residue id /A:1601 name HOH residue id /A:1602 name HOH residue id /A:1603 name HOH residue id /A:1604 name HOH residue id /A:1605 name HOH residue id /A:1606 name HOH residue id /A:1607 name HOH residue id /A:1608 name HOH residue id /A:1609 name HOH residue id /A:1610 name HOH residue id /A:1611 name HOH residue id /A:1612 name HOH residue id /A:1613 name HOH residue id /A:1614 name HOH residue id /A:1615 name HOH residue id /A:1616 name HOH residue id /A:1617 name HOH residue id /A:1618 name HOH residue id /A:1619 name HOH residue id /A:1620 name HOH residue id /A:1621 name HOH residue id /A:1622 name HOH residue id /A:1623 name HOH residue id /A:1624 name HOH residue id /A:1625 name HOH residue id /A:1626 name HOH residue id /A:1627 name HOH residue id /A:1628 name HOH residue id /A:1629 name HOH residue id /A:1630 name HOH residue id /A:1631 name HOH residue id /A:1632 name HOH residue id /A:1633 name HOH residue id /A:1634 name HOH residue id /A:1635 name HOH residue id /A:1636 name HOH residue id /A:1637 name HOH residue id /A:1638 name HOH residue id /A:1639 name HOH residue id /A:1640 name HOH residue id /A:1641 name HOH residue id /A:1642 name HOH residue id /A:1643 name HOH residue id /A:1644 name HOH residue id /A:1645 name HOH residue id /A:1646 name HOH residue id /A:1647 name HOH residue id /A:1648 name HOH residue id /A:1649 name HOH residue id /A:1650 name HOH residue id /A:1651 name HOH residue id /A:1652 name HOH residue id /A:1653 name HOH residue id /A:1654 name HOH residue id /A:1655 name HOH residue id /A:1656 name HOH residue id /A:1657 name HOH residue id /A:1658 name HOH residue id /A:1659 name HOH residue id /A:1660 name HOH residue id /A:1661 name HOH residue id /A:1662 name HOH residue id /A:1663 name HOH residue id /A:1664 name HOH residue id /A:1665 name HOH residue id /A:1666 name HOH residue id /A:1667 name HOH residue id /A:1668 name HOH residue id /A:1669 name HOH residue id /A:1670 name HOH residue id /A:1671 name HOH residue id /A:1672 name HOH residue id /A:1673 name HOH residue id /A:1674 name HOH residue id /A:1675 name HOH residue id /A:1676 name HOH residue id /A:1677 name HOH residue id /A:1678 name HOH residue id /A:1679 name HOH residue id /A:1680 name HOH residue id /A:1681 name HOH residue id /A:1682 name HOH residue id /A:1683 name HOH residue id /A:1684 name HOH residue id /A:1685 name HOH residue id /A:1686 name HOH residue id /A:1687 name HOH residue id /A:1688 name HOH residue id /A:1689 name HOH residue id /A:1690 name HOH residue id /A:1691 name HOH residue id /A:1692 name HOH residue id /A:1693 name HOH residue id /A:1694 name HOH residue id /A:1695 name HOH residue id /A:1696 name HOH residue id /A:1697 name HOH residue id /A:1698 name HOH residue id /A:1699 name HOH residue id /A:1700 name HOH residue id /A:1701 name HOH residue id /A:1702 name HOH residue id /A:1703 name HOH residue id /A:1704 name HOH residue id /A:1705 name HOH residue id /A:1706 name HOH residue id /A:1707 name HOH residue id /A:1708 name HOH residue id /A:1709 name HOH residue id /A:1710 name HOH residue id /A:1711 name HOH residue id /A:1712 name HOH residue id /A:1713 name HOH residue id /A:1714 name HOH residue id /A:1715 name HOH residue id /A:1716 name HOH residue id /A:1717 name HOH residue id /A:1718 name HOH residue id /A:1719 name HOH residue id /A:1720 name HOH residue id /A:1721 name HOH residue id /A:1722 name HOH residue id /A:1723 name HOH residue id /A:1724 name HOH residue id /A:1725 name HOH residue id /A:1726 name HOH residue id /A:1727 name HOH residue id /A:1728 name HOH residue id /A:1729 name HOH residue id /A:1730 name HOH residue id /A:1731 name HOH residue id /A:1732 name HOH residue id /A:1733 name HOH residue id /A:1734 name HOH residue id /A:1735 name HOH residue id /A:1736 name HOH residue id /A:1737 name HOH residue id /A:1738 name HOH residue id /A:1739 name HOH residue id /A:1740 name HOH residue id /A:1741 name HOH residue id /A:1742 name HOH residue id /A:1743 name HOH residue id /A:1744 name HOH residue id /A:1745 name HOH residue id /A:1746 name HOH residue id /A:1747 name HOH residue id /A:1748 name HOH residue id /A:1749 name HOH residue id /A:1750 name HOH residue id /A:1751 name HOH residue id /A:1752 name HOH residue id /A:1753 name HOH residue id /A:1754 name HOH residue id /A:1755 name HOH > select zone /A:1401 4 Selected 57 atoms, 1 surfaces > select clear > select /A:1401 33 atoms, 37 bonds, 1 residue, 1 model selected > select zone sel 4 Selected 57 atoms, 1 surfaces > info residues residue id /A:1052 name HIS index 4 residue id /A:1053 name ILE index 5 residue id /A:1054 name ASP index 6 residue id /A:1055 name LEU index 7 residue id /A:1056 name SER index 8 residue id /A:1057 name ALA index 9 residue id /A:1058 name LEU index 10 residue id /A:1059 name ASN index 11 residue id /A:1060 name PRO index 12 residue id /A:1061 name GLU index 13 residue id /A:1062 name LEU index 14 residue id /A:1063 name VAL index 15 residue id /A:1064 name GLN index 16 residue id /A:1065 name ALA index 17 residue id /A:1066 name VAL index 18 residue id /A:1067 name GLN index 19 residue id /A:1068 name HIS index 20 residue id /A:1069 name VAL index 21 residue id /A:1070 name VAL index 22 residue id /A:1071 name ILE index 23 residue id /A:1072 name GLY index 24 residue id /A:1073 name PRO index 25 residue id /A:1074 name SER index 26 residue id /A:1075 name SER index 27 residue id /A:1076 name LEU index 28 residue id /A:1077 name ILE index 29 residue id /A:1078 name VAL index 30 residue id /A:1079 name HIS index 31 residue id /A:1080 name PHE index 32 residue id /A:1081 name ASN index 33 residue id /A:1082 name GLU index 34 residue id /A:1083 name VAL index 35 residue id /A:1084 name ILE index 36 residue id /A:1085 name GLY index 37 residue id /A:1086 name ARG index 38 residue id /A:1087 name GLY index 39 residue id /A:1088 name HIS index 40 residue id /A:1089 name PHE index 41 residue id /A:1090 name GLY index 42 residue id /A:1091 name CYS index 43 residue id /A:1092 name VAL index 44 residue id /A:1093 name TYR index 45 residue id /A:1094 name HIS index 46 residue id /A:1095 name GLY index 47 residue id /A:1096 name THR index 48 residue id /A:1097 name LEU index 49 residue id /A:1098 name LEU index 50 residue id /A:1104 name LYS index 56 residue id /A:1105 name ILE index 57 residue id /A:1106 name HIS index 58 residue id /A:1107 name CYS index 59 residue id /A:1108 name ALA index 60 residue id /A:1109 name VAL index 61 residue id /A:1110 name LYS index 62 residue id /A:1111 name SER index 63 residue id /A:1112 name LEU index 64 residue id /A:1113 name ASN index 65 residue id /A:1114 name ARG index 66 residue id /A:1115 name ILE index 67 residue id /A:1116 name THR index 68 residue id /A:1117 name ASP index 69 residue id /A:1118 name ILE index 70 residue id /A:1119 name GLY index 71 residue id /A:1120 name GLU index 72 residue id /A:1121 name VAL index 73 residue id /A:1122 name SER index 74 residue id /A:1123 name GLN index 75 residue id /A:1124 name PHE index 76 residue id /A:1125 name LEU index 77 residue id /A:1126 name THR index 78 residue id /A:1127 name GLU index 79 residue id /A:1128 name GLY index 80 residue id /A:1129 name ILE index 81 residue id /A:1130 name ILE index 82 residue id /A:1131 name MET index 83 residue id /A:1132 name LYS index 84 residue id /A:1133 name ASP index 85 residue id /A:1134 name PHE index 86 residue id /A:1135 name SER index 87 residue id /A:1136 name HIS index 88 residue id /A:1137 name PRO index 89 residue id /A:1138 name ASN index 90 residue id /A:1139 name VAL index 91 residue id /A:1140 name LEU index 92 residue id /A:1141 name SER index 93 residue id /A:1142 name LEU index 94 residue id /A:1143 name LEU index 95 residue id /A:1144 name GLY index 96 residue id /A:1145 name ILE index 97 residue id /A:1146 name CYS index 98 residue id /A:1147 name LEU index 99 residue id /A:1148 name ARG index 100 residue id /A:1149 name SER index 101 residue id /A:1150 name GLU index 102 residue id /A:1151 name GLY index 103 residue id /A:1152 name SER index 104 residue id /A:1153 name PRO index 105 residue id /A:1154 name LEU index 106 residue id /A:1155 name VAL index 107 residue id /A:1156 name VAL index 108 residue id /A:1157 name LEU index 109 residue id /A:1158 name PRO index 110 residue id /A:1159 name TYR index 111 residue id /A:1160 name MET index 112 residue id /A:1161 name LYS index 113 residue id /A:1162 name HIS index 114 residue id /A:1163 name GLY index 115 residue id /A:1164 name ASP index 116 residue id /A:1165 name LEU index 117 residue id /A:1166 name ARG index 118 residue id /A:1167 name ASN index 119 residue id /A:1168 name PHE index 120 residue id /A:1169 name ILE index 121 residue id /A:1170 name ARG index 122 residue id /A:1171 name ASN index 123 residue id /A:1172 name GLU index 124 residue id /A:1173 name THR index 125 residue id /A:1174 name HIS index 126 residue id /A:1175 name ASN index 127 residue id /A:1176 name PRO index 128 residue id /A:1177 name THR index 129 residue id /A:1178 name VAL index 130 residue id /A:1179 name LYS index 131 residue id /A:1180 name ASP index 132 residue id /A:1181 name LEU index 133 residue id /A:1182 name ILE index 134 residue id /A:1183 name GLY index 135 residue id /A:1184 name PHE index 136 residue id /A:1185 name GLY index 137 residue id /A:1186 name LEU index 138 residue id /A:1187 name GLN index 139 residue id /A:1188 name VAL index 140 residue id /A:1189 name ALA index 141 residue id /A:1190 name LYS index 142 residue id /A:1191 name GLY index 143 residue id /A:1192 name MET index 144 residue id /A:1193 name LYS index 145 residue id /A:1194 name TYR index 146 residue id /A:1195 name LEU index 147 residue id /A:1196 name ALA index 148 residue id /A:1197 name SER index 149 residue id /A:1198 name LYS index 150 residue id /A:1199 name LYS index 151 residue id /A:1200 name PHE index 152 residue id /A:1201 name VAL index 153 residue id /A:1202 name HIS index 154 residue id /A:1203 name ARG index 155 residue id /A:1204 name ASP index 156 residue id /A:1205 name LEU index 157 residue id /A:1206 name ALA index 158 residue id /A:1207 name ALA index 159 residue id /A:1208 name ARG index 160 residue id /A:1209 name ASN index 161 residue id /A:1210 name CYS index 162 residue id /A:1211 name MET index 163 residue id /A:1212 name LEU index 164 residue id /A:1213 name ASP index 165 residue id /A:1214 name GLU index 166 residue id /A:1215 name LYS index 167 residue id /A:1216 name PHE index 168 residue id /A:1217 name THR index 169 residue id /A:1218 name VAL index 170 residue id /A:1219 name LYS index 171 residue id /A:1220 name VAL index 172 residue id /A:1221 name ALA index 173 residue id /A:1222 name ASP index 174 residue id /A:1223 name PHE index 175 residue id /A:1224 name GLY index 176 residue id /A:1225 name LEU index 177 residue id /A:1226 name ALA index 178 residue id /A:1227 name ARG index 179 residue id /A:1228 name ASP index 180 residue id /A:1229 name MET index 181 residue id /A:1230 name TYR index 182 residue id /A:1231 name ASP index 183 residue id /A:1232 name LYS index 184 residue id /A:1233 name GLU index 185 residue id /A:1234 name TYR index 186 residue id /A:1235 name TYR index 187 residue id /A:1236 name SER index 188 residue id /A:1237 name VAL index 189 residue id /A:1238 name HIS index 190 residue id /A:1239 name ASN index 191 residue id /A:1240 name LYS index 192 residue id /A:1241 name THR index 193 residue id /A:1242 name GLY index 194 residue id /A:1243 name ALA index 195 residue id /A:1244 name LYS index 196 residue id /A:1245 name LEU index 197 residue id /A:1246 name PRO index 198 residue id /A:1247 name VAL index 199 residue id /A:1248 name LYS index 200 residue id /A:1249 name TRP index 201 residue id /A:1250 name MET index 202 residue id /A:1251 name ALA index 203 residue id /A:1252 name LEU index 204 residue id /A:1253 name GLU index 205 residue id /A:1254 name SER index 206 residue id /A:1255 name LEU index 207 residue id /A:1256 name GLN index 208 residue id /A:1257 name THR index 209 residue id /A:1258 name GLN index 210 residue id /A:1259 name LYS index 211 residue id /A:1260 name PHE index 212 residue id /A:1261 name THR index 213 residue id /A:1262 name THR index 214 residue id /A:1263 name LYS index 215 residue id /A:1264 name SER index 216 residue id /A:1265 name ASP index 217 residue id /A:1266 name VAL index 218 residue id /A:1267 name TRP index 219 residue id /A:1268 name SER index 220 residue id /A:1269 name PHE index 221 residue id /A:1270 name GLY index 222 residue id /A:1271 name VAL index 223 residue id /A:1272 name LEU index 224 residue id /A:1273 name LEU index 225 residue id /A:1274 name TRP index 226 residue id /A:1275 name GLU index 227 residue id /A:1276 name LEU index 228 residue id /A:1277 name MET index 229 residue id /A:1278 name THR index 230 residue id /A:1279 name ARG index 231 residue id /A:1280 name GLY index 232 residue id /A:1281 name ALA index 233 residue id /A:1282 name PRO index 234 residue id /A:1283 name PRO index 235 residue id /A:1284 name TYR index 236 residue id /A:1285 name PRO index 237 residue id /A:1286 name ASP index 238 residue id /A:1287 name VAL index 239 residue id /A:1288 name ASN index 240 residue id /A:1289 name THR index 241 residue id /A:1290 name PHE index 242 residue id /A:1291 name ASP index 243 residue id /A:1292 name ILE index 244 residue id /A:1293 name THR index 245 residue id /A:1294 name VAL index 246 residue id /A:1295 name TYR index 247 residue id /A:1296 name LEU index 248 residue id /A:1297 name LEU index 249 residue id /A:1298 name GLN index 250 residue id /A:1299 name GLY index 251 residue id /A:1300 name ARG index 252 residue id /A:1301 name ARG index 253 residue id /A:1302 name LEU index 254 residue id /A:1303 name LEU index 255 residue id /A:1304 name GLN index 256 residue id /A:1305 name PRO index 257 residue id /A:1306 name GLU index 258 residue id /A:1307 name TYR index 259 residue id /A:1308 name CYS index 260 residue id /A:1309 name PRO index 261 residue id /A:1310 name ASP index 262 residue id /A:1311 name PRO index 263 residue id /A:1312 name LEU index 264 residue id /A:1313 name TYR index 265 residue id /A:1314 name GLU index 266 residue id /A:1315 name VAL index 267 residue id /A:1316 name MET index 268 residue id /A:1317 name LEU index 269 residue id /A:1318 name LYS index 270 residue id /A:1319 name CYS index 271 residue id /A:1320 name TRP index 272 residue id /A:1321 name HIS index 273 residue id /A:1322 name PRO index 274 residue id /A:1323 name LYS index 275 residue id /A:1324 name ALA index 276 residue id /A:1325 name GLU index 277 residue id /A:1326 name MET index 278 residue id /A:1327 name ARG index 279 residue id /A:1328 name PRO index 280 residue id /A:1329 name SER index 281 residue id /A:1330 name PHE index 282 residue id /A:1331 name SER index 283 residue id /A:1332 name GLU index 284 residue id /A:1333 name LEU index 285 residue id /A:1334 name VAL index 286 residue id /A:1335 name SER index 287 residue id /A:1336 name ARG index 288 residue id /A:1337 name ILE index 289 residue id /A:1338 name SER index 290 residue id /A:1339 name ALA index 291 residue id /A:1340 name ILE index 292 residue id /A:1341 name PHE index 293 residue id /A:1342 name SER index 294 residue id /A:1343 name THR index 295 residue id /A:1344 name PHE index 296 residue id /A:1345 name ILE index 297 residue id /A:1346 name GLY index 298 residue id /A:1401 name 44X residue id /A:1501 name HOH residue id /A:1502 name HOH residue id /A:1503 name HOH residue id /A:1504 name HOH residue id /A:1505 name HOH residue id /A:1506 name HOH residue id /A:1507 name HOH residue id /A:1508 name HOH residue id /A:1509 name HOH residue id /A:1510 name HOH residue id /A:1511 name HOH residue id /A:1512 name HOH residue id /A:1513 name HOH residue id /A:1514 name HOH residue id /A:1515 name HOH residue id /A:1516 name HOH residue id /A:1517 name HOH residue id /A:1518 name HOH residue id /A:1519 name HOH residue id /A:1520 name HOH residue id /A:1521 name HOH residue id /A:1522 name HOH residue id /A:1523 name HOH residue id /A:1524 name HOH residue id /A:1525 name HOH residue id /A:1526 name HOH residue id /A:1527 name HOH residue id /A:1528 name HOH residue id /A:1529 name HOH residue id /A:1530 name HOH residue id /A:1531 name HOH residue id /A:1532 name HOH residue id /A:1533 name HOH residue id /A:1534 name HOH residue id /A:1535 name HOH residue id /A:1536 name HOH residue id /A:1537 name HOH residue id /A:1538 name HOH residue id /A:1539 name HOH residue id /A:1540 name HOH residue id /A:1541 name HOH residue id /A:1542 name HOH residue id /A:1543 name HOH residue id /A:1544 name HOH residue id /A:1545 name HOH residue id /A:1546 name HOH residue id /A:1547 name HOH residue id /A:1548 name HOH residue id /A:1549 name HOH residue id /A:1550 name HOH residue id /A:1551 name HOH residue id /A:1552 name HOH residue id /A:1553 name HOH residue id /A:1554 name HOH residue id /A:1555 name HOH residue id /A:1556 name HOH residue id /A:1557 name HOH residue id /A:1558 name HOH residue id /A:1559 name HOH residue id /A:1560 name HOH residue id /A:1561 name HOH residue id /A:1562 name HOH residue id /A:1563 name HOH residue id /A:1564 name HOH residue id /A:1565 name HOH residue id /A:1566 name HOH residue id /A:1567 name HOH residue id /A:1568 name HOH residue id /A:1569 name HOH residue id /A:1570 name HOH residue id /A:1571 name HOH residue id /A:1572 name HOH residue id /A:1573 name HOH residue id /A:1574 name HOH residue id /A:1575 name HOH residue id /A:1576 name HOH residue id /A:1577 name HOH residue id /A:1578 name HOH residue id /A:1579 name HOH residue id /A:1580 name HOH residue id /A:1581 name HOH residue id /A:1582 name HOH residue id /A:1583 name HOH residue id /A:1584 name HOH residue id /A:1585 name HOH residue id /A:1586 name HOH residue id /A:1587 name HOH residue id /A:1588 name HOH residue id /A:1589 name HOH residue id /A:1590 name HOH residue id /A:1591 name HOH residue id /A:1592 name HOH residue id /A:1593 name HOH residue id /A:1594 name HOH residue id /A:1595 name HOH residue id /A:1596 name HOH residue id /A:1597 name HOH residue id /A:1598 name HOH residue id /A:1599 name HOH residue id /A:1600 name HOH residue id /A:1601 name HOH residue id /A:1602 name HOH residue id /A:1603 name HOH residue id /A:1604 name HOH residue id /A:1605 name HOH residue id /A:1606 name HOH residue id /A:1607 name HOH residue id /A:1608 name HOH residue id /A:1609 name HOH residue id /A:1610 name HOH residue id /A:1611 name HOH residue id /A:1612 name HOH residue id /A:1613 name HOH residue id /A:1614 name HOH residue id /A:1615 name HOH residue id /A:1616 name HOH residue id /A:1617 name HOH residue id /A:1618 name HOH residue id /A:1619 name HOH residue id /A:1620 name HOH residue id /A:1621 name HOH residue id /A:1622 name HOH residue id /A:1623 name HOH residue id /A:1624 name HOH residue id /A:1625 name HOH residue id /A:1626 name HOH residue id /A:1627 name HOH residue id /A:1628 name HOH residue id /A:1629 name HOH residue id /A:1630 name HOH residue id /A:1631 name HOH residue id /A:1632 name HOH residue id /A:1633 name HOH residue id /A:1634 name HOH residue id /A:1635 name HOH residue id /A:1636 name HOH residue id /A:1637 name HOH residue id /A:1638 name HOH residue id /A:1639 name HOH residue id /A:1640 name HOH residue id /A:1641 name HOH residue id /A:1642 name HOH residue id /A:1643 name HOH residue id /A:1644 name HOH residue id /A:1645 name HOH residue id /A:1646 name HOH residue id /A:1647 name HOH residue id /A:1648 name HOH residue id /A:1649 name HOH residue id /A:1650 name HOH residue id /A:1651 name HOH residue id /A:1652 name HOH residue id /A:1653 name HOH residue id /A:1654 name HOH residue id /A:1655 name HOH residue id /A:1656 name HOH residue id /A:1657 name HOH residue id /A:1658 name HOH residue id /A:1659 name HOH residue id /A:1660 name HOH residue id /A:1661 name HOH residue id /A:1662 name HOH residue id /A:1663 name HOH residue id /A:1664 name HOH residue id /A:1665 name HOH residue id /A:1666 name HOH residue id /A:1667 name HOH residue id /A:1668 name HOH residue id /A:1669 name HOH residue id /A:1670 name HOH residue id /A:1671 name HOH residue id /A:1672 name HOH residue id /A:1673 name HOH residue id /A:1674 name HOH residue id /A:1675 name HOH residue id /A:1676 name HOH residue id /A:1677 name HOH residue id /A:1678 name HOH residue id /A:1679 name HOH residue id /A:1680 name HOH residue id /A:1681 name HOH residue id /A:1682 name HOH residue id /A:1683 name HOH residue id /A:1684 name HOH residue id /A:1685 name HOH residue id /A:1686 name HOH residue id /A:1687 name HOH residue id /A:1688 name HOH residue id /A:1689 name HOH residue id /A:1690 name HOH residue id /A:1691 name HOH residue id /A:1692 name HOH residue id /A:1693 name HOH residue id /A:1694 name HOH residue id /A:1695 name HOH residue id /A:1696 name HOH residue id /A:1697 name HOH residue id /A:1698 name HOH residue id /A:1699 name HOH residue id /A:1700 name HOH residue id /A:1701 name HOH residue id /A:1702 name HOH residue id /A:1703 name HOH residue id /A:1704 name HOH residue id /A:1705 name HOH residue id /A:1706 name HOH residue id /A:1707 name HOH residue id /A:1708 name HOH residue id /A:1709 name HOH residue id /A:1710 name HOH residue id /A:1711 name HOH residue id /A:1712 name HOH residue id /A:1713 name HOH residue id /A:1714 name HOH residue id /A:1715 name HOH residue id /A:1716 name HOH residue id /A:1717 name HOH residue id /A:1718 name HOH residue id /A:1719 name HOH residue id /A:1720 name HOH residue id /A:1721 name HOH residue id /A:1722 name HOH residue id /A:1723 name HOH residue id /A:1724 name HOH residue id /A:1725 name HOH residue id /A:1726 name HOH residue id /A:1727 name HOH residue id /A:1728 name HOH residue id /A:1729 name HOH residue id /A:1730 name HOH residue id /A:1731 name HOH residue id /A:1732 name HOH residue id /A:1733 name HOH residue id /A:1734 name HOH residue id /A:1735 name HOH residue id /A:1736 name HOH residue id /A:1737 name HOH residue id /A:1738 name HOH residue id /A:1739 name HOH residue id /A:1740 name HOH residue id /A:1741 name HOH residue id /A:1742 name HOH residue id /A:1743 name HOH residue id /A:1744 name HOH residue id /A:1745 name HOH residue id /A:1746 name HOH residue id /A:1747 name HOH residue id /A:1748 name HOH residue id /A:1749 name HOH residue id /A:1750 name HOH residue id /A:1751 name HOH residue id /A:1752 name HOH residue id /A:1753 name HOH residue id /A:1754 name HOH residue id /A:1755 name HOH > delete solvent > select :1052-1346 2311 atoms, 2369 bonds, 1 pseudobond, 290 residues, 2 models selected > write format pdb selected recettore.pdb Unknown command: write format pdb selected recettore.pdb > select :1401 33 atoms, 37 bonds, 1 residue, 1 model selected > write format pdb selected ligando.pdb Unknown command: write format pdb selected ligando.pdb > select :1401 33 atoms, 37 bonds, 1 residue, 1 model selected > save ligando.pdb selectedOnly Missing ""selectedOnly"" keyword's argument > save ligando.pdb selectedOnly true > save ligando.mol2 selectedOnly true Expected a models specifier or a keyword > save ligando.pdb models #1 selectedOnly true > save ligando.mol2 selectedOnly true Expected a models specifier or a keyword > save ligando.mol2 models #1 > hide #!1.1 models > hide #1.1.1 models > hide #1.2 models > show #1.2 models > show #1.1.1 models > hide #!1 models > show #!1 models > select add #1.1 33 atoms, 37 bonds, 1 pseudobond, 1 residue, 3 models selected > select subtract #1.1 33 atoms, 37 bonds, 1 residue, 1 model selected > select add #1.1 33 atoms, 37 bonds, 1 pseudobond, 1 residue, 3 models selected > select subtract #1.1 33 atoms, 37 bonds, 1 residue, 1 model selected > select add #1 2344 atoms, 2406 bonds, 1 pseudobond, 291 residues, 4 models selected > select subtract #1 Nothing selected > select :1401 33 atoms, 37 bonds, 1 residue, 1 model selected > copy sel Unknown command: copy sel > select 1401 Expected an objects specifier or a keyword > select :1401 33 atoms, 37 bonds, 1 residue, 1 model selected > copy sel Unknown command: copy sel > write selected ligando.pdb Unknown command: write selected ligando.pdb > save ligando.pdb selectedOnly Missing ""selectedOnly"" keyword's argument > save ligando.pdb selectedOnly Missing ""selectedOnly"" keyword's argument > save ligando.pdb selectedOnly true > save ligando.pdb models #1 selectedOnly true > models Unknown command: models > list Unknown command: modeller list > Incomplete command: modeller > modellist Unknown command: modellist > list Unknown command: modeller list > version UCSF ChimeraX version: 1.12 (2026-06-12) © 2016-2026 Regents of the University of California. All rights reserved. > select /A:1401 33 atoms, 37 bonds, 1 residue, 1 model selected > info selection atom id /A:1401@C21 idatm_type C3 atom id /A:1401@C19 idatm_type Car atom id /A:1401@C20 idatm_type Car atom id /A:1401@N5 idatm_type N2 atom id /A:1401@O1 idatm_type Oar atom id /A:1401@C18 idatm_type Car atom id /A:1401@C15 idatm_type C2 atom id /A:1401@C16 idatm_type C2 atom id /A:1401@C17 idatm_type C2 atom id /A:1401@F1 idatm_type F atom id /A:1401@C14 idatm_type C2 atom id /A:1401@N2 idatm_type Npl atom id /A:1401@C13 idatm_type Car atom id /A:1401@N3 idatm_type N2 atom id /A:1401@N4 idatm_type N2 atom id /A:1401@C11 idatm_type Car atom id /A:1401@C10 idatm_type C3 atom id /A:1401@C12 idatm_type C3 atom id /A:1401@C7 idatm_type Car atom id /A:1401@C6 idatm_type Car atom id /A:1401@C4 idatm_type Car atom id /A:1401@C3 idatm_type Car atom id /A:1401@C8 idatm_type Car atom id /A:1401@C9 idatm_type Car atom id /A:1401@C5 idatm_type Car atom id /A:1401@N1 idatm_type N2 atom id /A:1401@C1 idatm_type Car atom id /A:1401@C2 idatm_type Car atom id /A:1401@O2 idatm_type O3 atom id /A:1401@C22 idatm_type C3 atom id /A:1401@C23 idatm_type C3 atom id /A:1401@O3 idatm_type O3 atom id /A:1401@C24 idatm_type C3 > save ligando.pdb selectedOnly true > save ligando.mol2 format mol2 atoms /A:1401 > Incomplete command: modeller > Incomplete command: modeller > Incomplete command: modeller > list Unknown command: modeller list > list Unknown command: modeller list > info models model id #1 type AtomicStructure name 4XYF.cif model id #1.1 type PseudobondGroup name ""missing structure"" model id #1.1.1 type ObjectLabels name labels model id #1.2 type ObjectLabels name labels > select /A:1401 33 atoms, 37 bonds, 1 residue, 1 model selected > save ligando.pdb models #1 selectedOnly true > save ligando.mol2 models #1 atoms /A:1401 Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\cmd_line\tool.py"", line 322, in execute cmd.run(cmd_text) File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\core\commands\cli.py"", line 3245, in run result = ci.function(session, **kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\save_command\cmd.py"", line 86, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\core\commands\cli.py"", line 3245, in run result = ci.function(session, **kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\save_command\cmd.py"", line 101, in provider_save saver_info.save(session, path, **provider_kw) File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\mol2\\__init__.py"", line 38, in save write_mol2(session, path, status=session.logger.status, **kw) File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\mol2\io.py"", line 193, in write_mol2 raise ValueError(""Cannot specify both 'models' and 'atoms' keywords"") ValueError: Cannot specify both 'models' and 'atoms' keywords ValueError: Cannot specify both 'models' and 'atoms' keywords File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\mol2\io.py"", line 193, in write_mol2 raise ValueError(""Cannot specify both 'models' and 'atoms' keywords"") See log for complete Python traceback. > save ligando.mol2 models #1 atoms /A:1401 Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\cmd_line\tool.py"", line 322, in execute cmd.run(cmd_text) File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\core\commands\cli.py"", line 3245, in run result = ci.function(session, **kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\save_command\cmd.py"", line 86, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\core\commands\cli.py"", line 3245, in run result = ci.function(session, **kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\save_command\cmd.py"", line 101, in provider_save saver_info.save(session, path, **provider_kw) File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\mol2\\__init__.py"", line 38, in save write_mol2(session, path, status=session.logger.status, **kw) File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\mol2\io.py"", line 193, in write_mol2 raise ValueError(""Cannot specify both 'models' and 'atoms' keywords"") ValueError: Cannot specify both 'models' and 'atoms' keywords ValueError: Cannot specify both 'models' and 'atoms' keywords File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\mol2\io.py"", line 193, in write_mol2 raise ValueError(""Cannot specify both 'models' and 'atoms' keywords"") See log for complete Python traceback. > save ligando.mol2 models #1 atoms /A:1401 Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\cmd_line\tool.py"", line 322, in execute cmd.run(cmd_text) File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\core\commands\cli.py"", line 3245, in run result = ci.function(session, **kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\save_command\cmd.py"", line 86, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\core\commands\cli.py"", line 3245, in run result = ci.function(session, **kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\save_command\cmd.py"", line 101, in provider_save saver_info.save(session, path, **provider_kw) File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\mol2\\__init__.py"", line 38, in save write_mol2(session, path, status=session.logger.status, **kw) File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\mol2\io.py"", line 193, in write_mol2 raise ValueError(""Cannot specify both 'models' and 'atoms' keywords"") ValueError: Cannot specify both 'models' and 'atoms' keywords ValueError: Cannot specify both 'models' and 'atoms' keywords File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\mol2\io.py"", line 193, in write_mol2 raise ValueError(""Cannot specify both 'models' and 'atoms' keywords"") See log for complete Python traceback. > save ligando.mol2 models #1 atoms /A:1401 Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\cmd_line\tool.py"", line 322, in execute cmd.run(cmd_text) File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\core\commands\cli.py"", line 3245, in run result = ci.function(session, **kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\save_command\cmd.py"", line 86, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\core\commands\cli.py"", line 3245, in run result = ci.function(session, **kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\save_command\cmd.py"", line 101, in provider_save saver_info.save(session, path, **provider_kw) File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\mol2\\__init__.py"", line 38, in save write_mol2(session, path, status=session.logger.status, **kw) File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\mol2\io.py"", line 193, in write_mol2 raise ValueError(""Cannot specify both 'models' and 'atoms' keywords"") ValueError: Cannot specify both 'models' and 'atoms' keywords ValueError: Cannot specify both 'models' and 'atoms' keywords File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\mol2\io.py"", line 193, in write_mol2 raise ValueError(""Cannot specify both 'models' and 'atoms' keywords"") See log for complete Python traceback. > save ligando.mol2 models #1 atoms /A:1401 Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\cmd_line\tool.py"", line 322, in execute cmd.run(cmd_text) File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\core\commands\cli.py"", line 3245, in run result = ci.function(session, **kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\save_command\cmd.py"", line 86, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\core\commands\cli.py"", line 3245, in run result = ci.function(session, **kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\save_command\cmd.py"", line 101, in provider_save saver_info.save(session, path, **provider_kw) File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\mol2\\__init__.py"", line 38, in save write_mol2(session, path, status=session.logger.status, **kw) File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\mol2\io.py"", line 193, in write_mol2 raise ValueError(""Cannot specify both 'models' and 'atoms' keywords"") ValueError: Cannot specify both 'models' and 'atoms' keywords ValueError: Cannot specify both 'models' and 'atoms' keywords File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\mol2\io.py"", line 193, in write_mol2 raise ValueError(""Cannot specify both 'models' and 'atoms' keywords"") See log for complete Python traceback. > save ligando.mol2 models #1 atoms /A:1401 Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\cmd_line\tool.py"", line 322, in execute cmd.run(cmd_text) File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\core\commands\cli.py"", line 3245, in run result = ci.function(session, **kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\save_command\cmd.py"", line 86, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\core\commands\cli.py"", line 3245, in run result = ci.function(session, **kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\save_command\cmd.py"", line 101, in provider_save saver_info.save(session, path, **provider_kw) File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\mol2\\__init__.py"", line 38, in save write_mol2(session, path, status=session.logger.status, **kw) File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\mol2\io.py"", line 193, in write_mol2 raise ValueError(""Cannot specify both 'models' and 'atoms' keywords"") ValueError: Cannot specify both 'models' and 'atoms' keywords ValueError: Cannot specify both 'models' and 'atoms' keywords File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\mol2\io.py"", line 193, in write_mol2 raise ValueError(""Cannot specify both 'models' and 'atoms' keywords"") See log for complete Python traceback. > save ligando.mol2 models #1 atoms /A:1401 Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\cmd_line\tool.py"", line 322, in execute cmd.run(cmd_text) File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\core\commands\cli.py"", line 3245, in run result = ci.function(session, **kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\save_command\cmd.py"", line 86, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\core\commands\cli.py"", line 3245, in run result = ci.function(session, **kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\save_command\cmd.py"", line 101, in provider_save saver_info.save(session, path, **provider_kw) File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\mol2\\__init__.py"", line 38, in save write_mol2(session, path, status=session.logger.status, **kw) File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\mol2\io.py"", line 193, in write_mol2 raise ValueError(""Cannot specify both 'models' and 'atoms' keywords"") ValueError: Cannot specify both 'models' and 'atoms' keywords ValueError: Cannot specify both 'models' and 'atoms' keywords File ""C:\Program Files\ChimeraX 1.12\bin\Lib\site- packages\chimerax\mol2\io.py"", line 193, in write_mol2 raise ValueError(""Cannot specify both 'models' and 'atoms' keywords"") See log for complete Python traceback. OpenGL version: 3.3.0 - Build 31.0.101.4032 OpenGL renderer: Intel(R) UHD Graphics OpenGL vendor: Intel Python: 3.11.9 Locale: it_IT.cp1252 Qt version: PyQt6 6.10.2, Qt 6.10.0 Qt runtime version: 6.10.2 Qt platform: windows Manufacturer: Acer Model: Aspire A515-57 OS: Microsoft Windows 11 Home (Build 26200.8894) Memory: 16,869,548,032 MaxProcessMemory: 137,438,953,344 CPU: 12 12th Gen Intel(R) Core(TM) i5-12450H OSLanguage: it-IT Installed Packages: accessible-pygments: 0.0.5 aiohappyeyeballs: 2.6.2 aiohttp: 3.13.4 aiosignal: 1.4.0 alabaster: 1.0.0 annotated-types: 0.7.0 anyio: 4.13.0 appdirs: 1.4.4 asttokens: 3.0.1 attrs: 26.1.0 babel: 2.18.0 beautifulsoup4: 4.13.5 blockdiag: 3.0.0 blosc2: 4.4.3 bs4: 0.0.2 build: 1.3.0 certifi: 2026.5.20 cftime: 1.6.5 charset-normalizer: 3.4.7 ChimeraX-AddCharge: 1.5.20 ChimeraX-AddH: 2.2.8 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.6.2 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 3.2 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Animations: 1.0 ChimeraX-Aniso: 1.3.2 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.67.1 ChimeraX-AtomicLibrary: 14.4 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.3 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-Boltz: 1.1 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.2 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.6.0 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4.1 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.5 ChimeraX-ChemGroup: 2.0.2 ChimeraX-Clashes: 2.4 ChimeraX-Cluster: 1.0 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.8 ChimeraX-CommandLine: 1.3.1 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.12 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.5 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.4 ChimeraX-Dicom: 1.2.7 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.2.2 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5.3 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.4 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.8.2 ChimeraX-Label: 1.5 ChimeraX-LightingGUI: 1.0 ChimeraX-ListInfo: 1.3.1 ChimeraX-Log: 1.2.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.3 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchAlign: 1.2 ChimeraX-MatchMaker: 2.4.1 ChimeraX-MCopy: 1.0 ChimeraX-MCPServer: 0.2.0 ChimeraX-MDcrds: 2.19 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-Minimize: 1.3.9 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.16 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.23 ChimeraX-ModelPanel: 1.6.1 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0.1 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.15.4 ChimeraX-OpenFold: 1.0 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.13 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.5 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.4 ChimeraX-ProfileGrids: 1.6 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.8.2 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.3 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.2 ChimeraX-Scenes: 0.3.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.3 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.12 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.18 ChimeraX-Shape: 1.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.1 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SNFG: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.19.3 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5.3 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.4 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.50.8 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.2 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDock: 1.6.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.5 ChimeraX-Zone: 1.0.1 click: 8.4.1 colorama: 0.4.6 comm: 0.2.3 comtypes: 1.4.11 contourpy: 1.3.3 coverage: 7.14.1 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.2.4 debugpy: 1.8.21 decorator: 5.3.1 docutils: 0.21.2 executing: 2.2.1 filelock: 3.19.1 fonttools: 4.63.0 frozenlist: 1.8.0 funcparserlib: 2.0.0a0 glfw: 2.10.0 grako: 3.16.5 h11: 0.16.0 h5py: 3.16.0 html2text: 2025.4.15 httpcore: 1.0.9 httpx: 0.28.1 httpx-sse: 0.4.3 idna: 3.18 ihm: 2.2 imagecodecs: 2024.6.1 imagesize: 2.0.0 iniconfig: 2.3.0 ipykernel: 7.1.0 ipython: 9.9.0 ipython_pygments_lexers: 1.1.1 jedi: 0.19.2 Jinja2: 3.1.6 jsonschema: 4.26.0 jsonschema-specifications: 2025.9.1 jupyter_client: 8.8.0 jupyter_core: 5.9.1 kiwisolver: 1.5.0 line_profiler: 5.0.0 lxml: 6.0.2 lz4: 4.3.2 Markdown: 3.8.2 MarkupSafe: 3.0.3 matplotlib: 3.10.7 matplotlib-inline: 0.2.2 mcp: 1.18.0 msgpack: 1.1.1 multidict: 6.7.1 narwhals: 2.22.1 ndindex: 1.10.1 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.14.1 numpy: 1.26.4 nvidia-nvjitlink-cu12: 12.9.86 OpenMM: 8.4.0 OpenMM-CUDA-12: 8.4.0 openvr: 1.26.701 packaging: 25.0 ParmEd: 4.2.2 parso: 0.8.7 pep517: 0.13.1 pickleshare: 0.7.5 pillow: 11.3.0 pip: 25.2 pkginfo: 1.12.1.2 platformdirs: 4.10.0 plotly: 6.8.0 pluggy: 1.6.0 prompt_toolkit: 3.0.52 propcache: 0.5.2 psutil: 7.0.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pybind11: 3.0.1 pycollada: 0.8 pydantic: 2.13.4 pydantic-settings: 2.14.1 pydantic_core: 2.46.4 pydata-sphinx-theme: 0.18.0 pydicom: 2.4.4 Pygments: 2.18.0 pynmrstar: 3.5.1 pynrrd: 1.0.0 PyOpenGL: 3.1.10 PyOpenGL-accelerate: 3.1.10 pyopenxr: 1.1.4501 pyparsing: 3.3.2 pyproject_hooks: 1.2.0 PyQt6-commercial: 6.10.2 PyQt6-Qt6: 6.10.2 PyQt6-WebEngine-commercial: 6.10.0 PyQt6-WebEngine-Qt6: 6.10.2 PyQt6_sip: 13.10.3 pytest: 9.0.3 pytest-cov: 7.1.0 python-dateutil: 2.9.0.post0 python-dotenv: 1.2.2 python-multipart: 0.0.32 pywin32: 311 pyzmq: 27.1.0 qtconsole: 5.7.0 QtPy: 2.4.3 qtshim: 1.2.2 RandomWords: 0.4.0 referencing: 0.37.0 requests: 2.32.5 roman-numerals: 4.1.0 rpds-py: 2026.5.1 scipy: 1.14.0 setuptools: 80.9.0 sfftk-rw: 0.8.1 six: 1.17.0 snowballstemmer: 3.1.1 sortedcontainers: 2.4.0 soupsieve: 2.8.4 Sphinx: 9.0.4 sphinx-autodoc-typehints: 3.6.1 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 sse-starlette: 3.4.4 stack-data: 0.6.3 starlette: 1.3.0 superqt: 0.7.6 tables: 3.10.2 tcia_utils: 3.2.1 threadpoolctl: 3.6.0 tifffile: 2025.3.13 tinyarray: 1.2.5 tornado: 6.5.7 tqdm: 4.68.2 traitlets: 5.14.3 typing-inspection: 0.4.2 typing_extensions: 4.15.0 tzdata: 2026.2 Unidecode: 1.4.0 urllib3: 2.7.0 uvicorn: 0.49.0 wcwidth: 0.8.1 webcolors: 24.11.1 wheel: 0.45.1 wheel-filename: 1.4.2 WMI: 1.5.1 yarl: 1.24.2 }}} " defect closed normal Input/Output fixed all ChimeraX