id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 2324 2D label pick: local variable 'lm' referenced before assignment chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: Windows-10-10.0.17134 ChimeraX Version: 0.91 (2019-08-17) Description (Describe the actions that caused this problem to occur here) Log: Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 0.91 (2019-08-17) © 2016-2019 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""E:/rtm/rna int 07262019/2019-07-26/23-02-56-1009605674/final- clust2.pdb"" Summary of feedback from opening E:/rtm/rna int 07262019/2019-07-26/23-02-56-1009605674/final-clust2.pdb --- warnings | Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 Duplicate atom serial number found: 6 386 messages similar to the above omitted Chain information for final-clust2.pdb #1 --- Chain | Description A | No description available B | No description available > nucleotides stubs > nucleotides ladder > nucleotides tube/slab shape muffler > nucleotides tube/slab shape ellipsoid > nucleotides tube/slab shape box > nucleotides atoms > style nucleic stick Changed 1059 atom styles > nucleotides fill > style nucleic stick Changed 1059 atom styles > color bynucleotide > volume style surface No volumes specified > color bychain > set bgColor white > set bgColor gray > set bgColor white > volume appearance CT_Skin No volumes specified > ui mousemode rightMode ""mark point"" Alignment identifier is 1.A Alignment identifier is 1.B > lighting shadows true > ui mousemode rightMode label > label #1/B:27 > undo > redo > ui mousemode rightMode label > ui mousemode rightMode label > ui mousemode rightMode ""move label"" > ui mousemode rightMode ""move label"" > select nucleic-acid 1059 atoms, 1196 bonds, 1 model selected > select clear > select :A:C:G:U 1059 atoms, 1196 bonds, 1 model selected > select clear Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 458, in gw.mousePressEvent = lambda e, s=self: s._dispatch_mouse_event(e, ""mouse_down"") File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 387, in _dispatch_mouse_event f(MouseEvent(event, modifiers=modifiers)) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\label\movelabel.py"", line 26, in mouse_down self._label = label = label_under_window_position(self.session, x, y) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\label\label2d.py"", line 240, in label_under_window_position lm = session_labels(session) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\label\label2d.py"", line 454, in session_labels return lm UnboundLocalError: local variable 'lm' referenced before assignment UnboundLocalError: local variable 'lm' referenced before assignment File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\label\label2d.py"", line 454, in session_labels return lm See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 458, in gw.mousePressEvent = lambda e, s=self: s._dispatch_mouse_event(e, ""mouse_down"") File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 387, in _dispatch_mouse_event f(MouseEvent(event, modifiers=modifiers)) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\label\movelabel.py"", line 26, in mouse_down self._label = label = label_under_window_position(self.session, x, y) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\label\label2d.py"", line 240, in label_under_window_position lm = session_labels(session) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\label\label2d.py"", line 454, in session_labels return lm UnboundLocalError: local variable 'lm' referenced before assignment UnboundLocalError: local variable 'lm' referenced before assignment File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\label\label2d.py"", line 454, in session_labels return lm See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 458, in gw.mousePressEvent = lambda e, s=self: s._dispatch_mouse_event(e, ""mouse_down"") File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py"", line 387, in _dispatch_mouse_event f(MouseEvent(event, modifiers=modifiers)) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\label\movelabel.py"", line 26, in mouse_down self._label = label = label_under_window_position(self.session, x, y) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\label\label2d.py"", line 240, in label_under_window_position lm = session_labels(session) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\label\label2d.py"", line 454, in session_labels return lm UnboundLocalError: local variable 'lm' referenced before assignment UnboundLocalError: local variable 'lm' referenced before assignment File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\label\label2d.py"", line 454, in session_labels return lm See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\ui\gui.py"", line 871, in save_action.triggered.connect(lambda arg, s=self, sess=session: s.file_save_cb(sess)) File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\ui\gui.py"", line 601, in file_save_cb self.save_dialog.display(self, session) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\save_dialog.py"", line 138, in display fmt.save(session, filename) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\savemap.py"", line 52, in save self._map_menu.value.id_string) AttributeError: 'NoneType' object has no attribute 'id_string' AttributeError: 'NoneType' object has no attribute 'id_string' File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\savemap.py"", line 52, in save self._map_menu.value.id_string) See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\ui\gui.py"", line 871, in save_action.triggered.connect(lambda arg, s=self, sess=session: s.file_save_cb(sess)) File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\ui\gui.py"", line 601, in file_save_cb self.save_dialog.display(self, session) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\save_dialog.py"", line 138, in display fmt.save(session, filename) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\savemap.py"", line 52, in save self._map_menu.value.id_string) AttributeError: 'NoneType' object has no attribute 'id_string' AttributeError: 'NoneType' object has no attribute 'id_string' File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\savemap.py"", line 52, in save self._map_menu.value.id_string) See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\ui\gui.py"", line 871, in save_action.triggered.connect(lambda arg, s=self, sess=session: s.file_save_cb(sess)) File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\ui\gui.py"", line 601, in file_save_cb self.save_dialog.display(self, session) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\save_dialog.py"", line 138, in display fmt.save(session, filename) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\savemap.py"", line 52, in save self._map_menu.value.id_string) AttributeError: 'NoneType' object has no attribute 'id_string' AttributeError: 'NoneType' object has no attribute 'id_string' File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\savemap.py"", line 52, in save self._map_menu.value.id_string) See log for complete Python traceback. OpenGL version: 3.3.0 NVIDIA 430.86 OpenGL renderer: GeForce GTX 1050 Ti/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation }}} " defect closed normal Graphics fixed all ChimeraX