id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 3299 unexpected unindent running Volume Viewer wpp15@… Tom Goddard "{{{ The following bug report has been submitted: Platform: Windows-7-6.1.7601-SP1 ChimeraX Version: 1.0rc202005150054 (2020-05-15 00:54:28 UTC) Description (Describe the actions that caused this problem to occur here) I cannot open the density map no matter from emdb or the download file. Log: UCSF ChimeraX version: 1.0rc202005150054 (2020-05-15) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open 9333 fromDatabase emdb Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site- packages\chimerax\cmd_line\tool.py"", line 258, in execute cmd.run(cmd_text) File ""C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2849, in run result = ci.function(session, **kw_args) File ""C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site- packages\chimerax\open_command\cmd.py"", line 101, in cmd_open Command(session, registry=registry).run(provider_cmd_text, log=log) File ""C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2849, in run result = ci.function(session, **kw_args) File ""C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site- packages\chimerax\open_command\cmd.py"", line 128, in provider_open (session, ident, format_name, ignore_cache), provider_kw) File ""C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site- packages\chimerax\open_command\cmd.py"", line 380, in collated_open return func(*func_args, **func_kw) File ""C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site- packages\chimerax\map\\__init__.py"", line 140, in fetch return fetcher(session, ident, ignore_cache=ignore_cache, **kw) File ""C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site- packages\chimerax\map\emdb_fetch.py"", line 49, in fetch_emdb name = model_name, **kw) File ""C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site- packages\chimerax\open_command\manager.py"", line 164, in open_data _add_models=False, **kw) File ""C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site- packages\chimerax\open_command\cmd.py"", line 152, in provider_open name or model_name_from_path(fi.file_name)), provider_kw) File ""C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site- packages\chimerax\open_command\cmd.py"", line 381, in collated_open return func(*func_args, **func_kw) File ""C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site- packages\chimerax\map\\__init__.py"", line 147, in open return open_map(session, path, format=_name, **kw) File ""C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site- packages\chimerax\map\volume.py"", line 3307, in open_map smodels, smsg = open_grids(session, sgrids, name, **kw) File ""C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site- packages\chimerax\map\volume.py"", line 3367, in open_grids show_volume_dialog(session) File ""C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site- packages\chimerax\map\volume.py"", line 3191, in show_volume_dialog from .volume_viewer import show_volume_dialog File ""C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site- packages\chimerax\map\volume_viewer.py"", line 4955 except Exception: ^ IndentationError: unexpected unindent File ""C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site- packages\chimerax\map\volume_viewer.py"", line 4955 except Exception: ^ IndentationError: unexpected unindent File ""C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site- packages\chimerax\map\volume.py"", line 3191, in show_volume_dialog from .volume_viewer import show_volume_dialog See log for complete Python traceback. > open C:/Users/Administrator/Desktop/emd_9333_msk_1.map Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site- packages\chimerax\open_command\dialog.py"", line 146, in _qt_safe if data_format is None else "" format "" + StringArg.unparse(data_format.nicknames[0]))) File ""C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site- packages\chimerax\core\commands\run.py"", line 31, in run results = command.run(text, log=log) File ""C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2849, in run result = ci.function(session, **kw_args) File ""C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site- packages\chimerax\open_command\cmd.py"", line 101, in cmd_open Command(session, registry=registry).run(provider_cmd_text, log=log) File ""C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2849, in run result = ci.function(session, **kw_args) File ""C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site- packages\chimerax\open_command\cmd.py"", line 152, in provider_open name or model_name_from_path(fi.file_name)), provider_kw) File ""C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site- packages\chimerax\open_command\cmd.py"", line 380, in collated_open return func(*func_args, **func_kw) File ""C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site- packages\chimerax\map\\__init__.py"", line 147, in open return open_map(session, path, format=_name, **kw) File ""C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site- packages\chimerax\map\volume.py"", line 3307, in open_map smodels, smsg = open_grids(session, sgrids, name, **kw) File ""C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site- packages\chimerax\map\volume.py"", line 3367, in open_grids show_volume_dialog(session) File ""C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site- packages\chimerax\map\volume.py"", line 3191, in show_volume_dialog from .volume_viewer import show_volume_dialog File ""C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site- packages\chimerax\map\volume_viewer.py"", line 4955 except Exception: ^ IndentationError: unexpected unindent File ""C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site- packages\chimerax\map\volume_viewer.py"", line 4955 except Exception: ^ IndentationError: unexpected unindent File ""C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site- packages\chimerax\map\volume.py"", line 3191, in show_volume_dialog from .volume_viewer import show_volume_dialog See log for complete Python traceback. > open C:/Users/Administrator/Desktop/emd_9333_msk_1.map Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site- packages\chimerax\open_command\dialog.py"", line 146, in _qt_safe if data_format is None else "" format "" + StringArg.unparse(data_format.nicknames[0]))) File ""C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site- packages\chimerax\core\commands\run.py"", line 31, in run results = command.run(text, log=log) File ""C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2849, in run result = ci.function(session, **kw_args) File ""C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site- packages\chimerax\open_command\cmd.py"", line 101, in cmd_open Command(session, registry=registry).run(provider_cmd_text, log=log) File ""C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2849, in run result = ci.function(session, **kw_args) File ""C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site- packages\chimerax\open_command\cmd.py"", line 152, in provider_open name or model_name_from_path(fi.file_name)), provider_kw) File ""C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site- packages\chimerax\open_command\cmd.py"", line 380, in collated_open return func(*func_args, **func_kw) File ""C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site- packages\chimerax\map\\__init__.py"", line 147, in open return open_map(session, path, format=_name, **kw) File ""C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site- packages\chimerax\map\volume.py"", line 3307, in open_map smodels, smsg = open_grids(session, sgrids, name, **kw) File ""C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site- packages\chimerax\map\volume.py"", line 3367, in open_grids show_volume_dialog(session) File ""C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site- packages\chimerax\map\volume.py"", line 3191, in show_volume_dialog from .volume_viewer import show_volume_dialog File ""C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site- packages\chimerax\map\volume_viewer.py"", line 4955 except Exception: ^ IndentationError: unexpected unindent File ""C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site- packages\chimerax\map\volume_viewer.py"", line 4955 except Exception: ^ IndentationError: unexpected unindent File ""C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site- packages\chimerax\map\volume.py"", line 3191, in show_volume_dialog from .volume_viewer import show_volume_dialog See log for complete Python traceback. OpenGL version: 3.3.0 OpenGL renderer: GeForce 820M/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation Manufacturer: Dell Inc. Model: Inspiron 3442 OS: Microsoft Windows 7 旗舰版 (Build 7601) Memory: 4,194,283,520 MaxProcessMemory: 8,589,934,464 CPU: 4 Intel(R) Core(TM) i5-4210U CPU @ 1.70GHz"" PyQt version: 5.12.3 Compiled Qt version: 5.12.4 Runtime Qt version: 5.12.8 File attachment: emd_9333_msk_1.map }}} [attachment:""emd_9333_msk_1.map""] " defect closed normal Volume Data duplicate Greg Couch all ChimeraX