Opened 5 years ago
Last modified 5 years ago
#3898 closed defect
ChimeraX bug report submission — at Initial Version
| Reported by: | Owned by: | ||
|---|---|---|---|
| Priority: | normal | Milestone: | 1.2 |
| Component: | Tool Shed | Version: | |
| Keywords: | Cc: | Eric Pettersen | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Darwin-19.6.0-x86_64-i386-64bit
ChimeraX Version: 1.0 (2020-06-04 23:15:07 UTC)
Description
Trying to install the hkcage bundle in ChimeraX 1.0 from toolshed gives this error.
The bundle was built with the ChimeraX daily build which is using Python 3.8 while ChimeraX 1.0 uses Python 3.7. But the bundle_info.xml does not reference Python 3.8 nor does the wheel file name "ChimeraX_HKCage-1.1-py3-none-any.whl" and it will work fine on Python 3.7. It is not clear how the Python 3.8 dependency appeared, nor how to say any Python 3 will suffice.
Log:
UCSF ChimeraX version: 1.0 (2020-06-04)
© 2016-2020 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> toolshed show
Downloading bundle ChimeraX_HKCage-1.1-py3-none-any.whl
Looking in indexes: https://pypi.org/simple,
https://cxtoolshed.rbvi.ucsf.edu/pypi/
Processing /Users/goddard/Downloads/ChimeraX_HKCage-1.1-py3-none-any.whl
ERROR: Package 'ChimeraX-HKCage' requires a different Python: 3.7.7 not in
'>=3.8'
WARNING: You are using pip version 20.1; however, version 20.2.4 is available.
You should consider upgrading via the
'/Users/goddard/ucsf/ChimeraXOld/ChimeraX 1.0.app/Contents/MacOS/ChimeraX -m
pip install --upgrade pip' command.
Failed to send bug report. Error while sending follows:
Traceback (most recent call last):
File "/Users/goddard/ucsf/ChimeraXOld/ChimeraX
1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/bug_reporter/bug_reporter_gui.py", line 240, in submit
errcode, errmsg, headers, body = post_multipart_formdata(BUG_HOST,
BUG_SELECTOR, fields)
File "/Users/goddard/ucsf/ChimeraXOld/ChimeraX
1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/webservices/post_form.py", line 40, in
post_multipart_formdata
h.request('POST', url, body=body, headers=headers)
File "/Users/goddard/ucsf/ChimeraXOld/ChimeraX
1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/http/client.py",
line 1252, in request
self._send_request(method, url, body, headers, encode_chunked)
File "/Users/goddard/ucsf/ChimeraXOld/ChimeraX
1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/http/client.py",
line 1298, in _send_request
self.endheaders(body, encode_chunked=encode_chunked)
File "/Users/goddard/ucsf/ChimeraXOld/ChimeraX
1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/http/client.py",
line 1247, in endheaders
self._send_output(message_body, encode_chunked=encode_chunked)
File "/Users/goddard/ucsf/ChimeraXOld/ChimeraX
1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/http/client.py",
line 1026, in _send_output
self.send(msg)
File "/Users/goddard/ucsf/ChimeraXOld/ChimeraX
1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/http/client.py",
line 966, in send
self.connect()
File "/Users/goddard/ucsf/ChimeraXOld/ChimeraX
1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/http/client.py",
line 938, in connect
(self.host,self.port), self.timeout, self.source_address)
File "/Users/goddard/ucsf/ChimeraXOld/ChimeraX
1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/socket.py",
line 707, in create_connection
for res in getaddrinfo(host, port, 0, SOCK_STREAM):
File "/Users/goddard/ucsf/ChimeraXOld/ChimeraX
1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/socket.py",
line 752, in getaddrinfo
for res in _socket.getaddrinfo(host, port, family, type, proto, flags):
socket.gaierror: [Errno 8] nodename nor servname provided, or not known
OpenGL version: 4.1 ATI-3.10.18
OpenGL renderer: AMD Radeon Pro Vega 20 OpenGL Engine
OpenGL vendor: ATI Technologies Inc.Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro15,3
Processor Name: 8-Core Intel Core i9
Processor Speed: 2.4 GHz
Number of Processors: 1
Total Number of Cores: 8
L2 Cache (per Core): 256 KB
L3 Cache: 16 MB
Hyper-Threading Technology: Enabled
Memory: 32 GB
Boot ROM Version: 1037.147.4.0.0 (iBridge: 17.16.16610.0.0,0)
Software:
System Software Overview:
System Version: macOS 10.15.7 (19H2)
Kernel Version: Darwin 19.6.0
Time since boot: 31 days 14:24
Graphics/Displays:
Intel UHD Graphics 630:
Chipset Model: Intel UHD Graphics 630
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x3e9b
Revision ID: 0x0002
Automatic Graphics Switching: Supported
gMux Version: 5.0.0
Metal: Supported, feature set macOS GPUFamily2 v1
Radeon Pro Vega 20:
Chipset Model: Radeon Pro Vega 20
Type: GPU
Bus: PCIe
PCIe Lane Width: x8
VRAM (Total): 4 GB
Vendor: AMD (0x1002)
Device ID: 0x69af
Revision ID: 0x00c0
ROM Revision: 113-D2060I-087
VBIOS Version: 113-D20601MA0T-016
Option ROM Version: 113-D20601MA0T-016
EFI Driver Version: 01.01.087
Automatic Graphics Switching: Supported
gMux Version: 5.0.0
Metal: Supported, feature set macOS GPUFamily2 v1
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2880 x 1800 Retina
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
PyQt version: 5.12.3
Compiled Qt version: 5.12.4
Runtime Qt version: 5.12.8
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