id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
40	Parsing mmCIF crashes if struct_conn table present	Tom Goddard	Greg Couch	"Calling pdbio.parse_mmCIF_file() on 1a0m.cif from Python causes a crash due to an uncaught C++ exception, reported to the shell as

libc++abi.dylib: terminating with uncaught exception of type std::runtime_error: missing category: audit_conform on line 1065

There error does not seem to have anything to do with the audit_conform table.  The file is parsed without errors if I remove the struct_conn table from 1a0m.cif.  Also if I open a file without a struct_conn table such as 1a0k.cif then it works correctly.  Also if I comment out

    register_category(""struct_conn"",
        [this] (bool in) {
            parse_struct_conn(in/*_loop*/);
        }, { ""atom_site"" });

in pdbio/pdbio/mmcif.cpp the files are read correctly.  The error is not specific to 1a0m, any file with a struct_conn table crashes with the same error, for example, I tried 1jj2.cif.

"	defect	closed	major		Input/Output		fixed						all	chimera