id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 4667 Crash during garbage collection chimerax-bug-report@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: macOS-10.15.7-x86_64-i386-64bit ChimeraX Version: 1.2 (2021-04-27 05:33:30 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Segmentation fault Current thread 0x0000000108419dc0 (most recent call first): File ""/Applications/ChimeraX-1.2.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/atomic/molarray.py"", line 150 in File ""/Applications/ChimeraX-1.2.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/atomic/molarray.py"", line 150 in __iter__ File ""/Applications/ChimeraX-1.2.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/morph/util.py"", line 69 in copyMolecule File ""/Applications/ChimeraX-1.2.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/morph/motion.py"", line 79 in __init__ File ""/Applications/ChimeraX-1.2.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/morph/motion.py"", line 17 in compute_morph File ""/Applications/ChimeraX-1.2.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/morph/morph.py"", line 73 in morph File ""/Applications/ChimeraX-1.2.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/commands/cli.py"", line 2852 in run File ""/Applications/ChimeraX-1.2.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/cmd_line/tool.py"", line 275 in execute File ""/Applications/ChimeraX-1.2.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/cmd_line/tool.py"", line 112 in keyPressEvent File ""/Applications/ChimeraX-1.2.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/ui/gui.py"", line 293 in event_loop File ""/Applications/ChimeraX-1.2.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/ChimeraX_main.py"", line 866 in init File ""/Applications/ChimeraX-1.2.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/ChimeraX_main.py"", line 1015 in File ""/Applications/ChimeraX-1.2.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/runpy.py"", line 87 in _run_code File ""/Applications/ChimeraX-1.2.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/runpy.py"", line 194 in _run_module_as_main Process: ChimeraX [34337] Path: /Applications/ChimeraX-1.2.app/Contents/MacOS/ChimeraX Identifier: ChimeraX Version: 1.2.0 (1.2.0.0) Code Type: X86-64 (Native) Parent Process: ??? [1] Responsible: ChimeraX [34337] User ID: 501 Date/Time: 2021-05-18 23:31:53.935 -0700 OS Version: Mac OS X 10.15.7 (19H524) Report Version: 12 Bridge OS Version: 5.2 (18P4347) Anonymous UUID: 70A1F055-CC14-7C36-F8C5-A5248F526FFC Sleep/Wake UUID: 614F5721-5F28-416D-8F07-03A0BBBA5693 Time Awake Since Boot: 190000 seconds Time Since Wake: 3100 seconds System Integrity Protection: enabled Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread Exception Type: EXC_BAD_ACCESS (SIGSEGV) Exception Codes: KERN_INVALID_ADDRESS at 0x00000000000000a9 Exception Note: EXC_CORPSE_NOTIFY VM Regions Near 0xa9: --> __TEXT 0000000100a62000-0000000100a63000 [ 4K] r-x/r-x SM=COW /Applications/ChimeraX-1.2.app/Contents/MacOS/ChimeraX Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread 0 libsystem_kernel.dylib 0x00007fff6e22033a __pthread_kill + 10 1 libsystem_pthread.dylib 0x00007fff6e2dce60 pthread_kill + 430 2 libsystem_c.dylib 0x00007fff6e13793e raise + 26 3 libsystem_platform.dylib 0x00007fff6e2d15fd _sigtramp + 29 4 ??? 000000000000000000 0 + 0 5 org.python.python 0x0000000100abe411 dict_traverse + 241 6 org.python.python 0x0000000100bbf7d4 collect + 692 7 org.python.python 0x0000000100bc0744 _PyObject_GC_Alloc + 324 8 org.python.python 0x0000000100bc07b5 _PyObject_GC_New + 21 9 org.python.python 0x0000000100ab9747 PyDict_New + 87 10 cymol.cpython-38-darwin.so 0x0000000124743a6b __pyx_tp_new_8chimerax_6atomic_5cymol_CyAtom(_typeobject*, _object*, _object*) + 75 11 org.python.python 0x0000000100adf702 type_call + 50 12 org.python.python 0x0000000100a8ca85 _PyObject_MakeTpCall + 373 13 org.python.python 0x0000000100a8ec52 object_vacall + 418 14 org.python.python 0x0000000100a8ee8c PyObject_CallFunctionObjArgs + 156 15 libatomstruct.dylib 0x00000001244fbcc8 pyinstance::PythonInstance::py_instance(bool) const + 152 16 cymol.cpython-38-darwin.so 0x000000012474d693 __pyx_pw_8chimerax_6atomic_5cymol_6CyAtom_52c_ptr_to_py_inst(_object*, 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0x0000000100a8cdad PyVectorcall_Call + 109 62 QtCore.abi3.so 0x0000000107d76957 PyQtSlot::call(_object*, _object*) const + 39 63 QtCore.abi3.so 0x0000000107d76866 PyQtSlot::invoke(void**, _object*, void*, bool) const + 374 64 QtCore.abi3.so 0x0000000107d77455 PyQtSlotProxy::unislot(void**) + 85 65 QtCore.abi3.so 0x0000000107d773ca PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**) + 58 66 QtCore 0x000000011267ff6e void doActivate(QObject*, int, void**) + 1118 67 QtCore 0x00000001126800d5 void doActivate(QObject*, int, void**) + 1477 68 QtWidgets 0x0000000114d44b14 QWidgetLineControl::processKeyEvent(QKeyEvent*) + 548 69 QtWidgets 0x0000000114d3b732 QLineEdit::keyPressEvent(QKeyEvent*) + 34 70 QtWidgets 0x0000000114c33e4f QWidget::event(QEvent*) + 527 71 QtWidgets 0x0000000114d3aae7 QLineEdit::event(QEvent*) + 727 72 QtWidgets 0x0000000114cfecd0 QComboBox::keyPressEvent(QKeyEvent*) + 784 73 QtWidgets.abi3.so 0x0000000114890e5b meth_QComboBox_keyPressEvent(_object*, _object*) + 139 74 org.python.python 0x0000000100a8d0c2 cfunction_call_varargs + 290 75 org.python.python 0x0000000100a8ca85 _PyObject_MakeTpCall + 373 76 org.python.python 0x0000000100b5b665 call_function + 533 77 org.python.python 0x0000000100b5846e _PyEval_EvalFrameDefault + 25678 78 org.python.python 0x0000000100b5c454 _PyEval_EvalCodeWithName + 2804 79 org.python.python 0x0000000100a8d56e _PyFunction_Vectorcall + 270 80 org.python.python 0x0000000100a8fb7c method_vectorcall + 396 81 org.python.python 0x0000000100a8cdad PyVectorcall_Call + 109 82 sip.cpython-38-darwin.so 0x0000000107f869d7 sip_api_call_procedure_method + 199 83 QtWidgets.abi3.so 0x0000000114791f18 sipQComboBox::keyPressEvent(QKeyEvent*) + 104 84 QtWidgets 0x0000000114c33e4f QWidget::event(QEvent*) + 527 85 QtWidgets 0x0000000114cfe634 QComboBox::event(QEvent*) + 372 86 QtWidgets.abi3.so 0x000000011479141f sipQComboBox::event(QEvent*) + 191 87 QtWidgets 0x0000000114bf99ea QApplicationPrivate::notify_helper(QObject*, QEvent*) + 266 88 QtWidgets 0x0000000114bfafd3 QApplication::notify(QObject*, QEvent*) + 947 89 QtWidgets.abi3.so 0x00000001147acdb9 sipQApplication::notify(QObject*, QEvent*) + 233 90 QtCore 0x000000011264ca34 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212 91 QtWidgets 0x0000000114c52351 QWidgetWindow::handleKeyEvent(QKeyEvent*) + 145 92 QtWidgets 0x0000000114c51727 QWidgetWindow::event(QEvent*) + 295 93 QtWidgets 0x0000000114bf99ea QApplicationPrivate::notify_helper(QObject*, QEvent*) + 266 94 QtWidgets 0x0000000114bfae11 QApplication::notify(QObject*, QEvent*) + 497 95 QtWidgets.abi3.so 0x00000001147acdb9 sipQApplication::notify(QObject*, QEvent*) + 233 96 QtCore 0x000000011264ca34 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212 97 QtGui 0x00000001152679c8 QGuiApplicationPrivate::processKeyEvent(QWindowSystemInterfacePrivate::KeyEvent*) + 152 98 QtGui 0x000000011524bd7b QWindowSystemInterface::sendWindowSystemEvents(QFlags) + 219 99 QtGui 0x0000000115246b72 QWindowSystemInterface::flushWindowSystemEvents(QFlags) + 594 100 libqcocoa.dylib 0x0000000122c23848 -[QNSView(Keys) handleKeyEvent:eventType:] + 1144 101 libqcocoa.dylib 0x0000000122c23a18 -[QNSView(Keys) keyDown:] + 88 102 com.apple.AppKit 0x00007fff31408d5d -[NSWindow(NSEventRouting) _reallySendEvent:isDelayedEvent:] + 6512 103 com.apple.AppKit 0x00007fff314071c9 -[NSWindow(NSEventRouting) sendEvent:] + 349 104 libqcocoa.dylib 0x0000000122c26dd5 -[QNSWindow sendEvent:] + 549 105 com.apple.AppKit 0x00007fff31405efe -[NSApplication(NSEvent) sendEvent:] + 2826 106 libqcocoa.dylib 0x0000000122c2e12a -[QNSApplication sendEvent:] + 74 107 com.apple.AppKit 0x00007fff312525bf -[NSApplication run] + 707 108 libqcocoa.dylib 0x0000000122c2a62f QCocoaEventDispatcher::processEvents(QFlags) + 2495 109 QtCore 0x0000000112648acf QEventLoop::exec(QFlags) + 431 110 QtCore 0x000000011264d042 QCoreApplication::exec() + 130 111 QtWidgets.abi3.so 0x000000011489e702 meth_QApplication_exec_(_object*, _object*) + 82 112 org.python.python 0x0000000100a8d0c2 cfunction_call_varargs + 290 113 org.python.python 0x0000000100a8ca85 _PyObject_MakeTpCall + 373 114 org.python.python 0x0000000100b5b665 call_function + 533 115 org.python.python 0x0000000100b5846e _PyEval_EvalFrameDefault + 25678 116 org.python.python 0x0000000100a8d3d0 function_code_fastcall + 128 117 org.python.python 0x0000000100a8fa9a method_vectorcall + 170 118 org.python.python 0x0000000100b5b60c call_function + 444 119 org.python.python 0x0000000100b5846e _PyEval_EvalFrameDefault + 25678 120 org.python.python 0x0000000100b5c454 _PyEval_EvalCodeWithName + 2804 121 org.python.python 0x0000000100a8d56e _PyFunction_Vectorcall + 270 122 org.python.python 0x0000000100b5b60c call_function + 444 123 org.python.python 0x0000000100b58505 _PyEval_EvalFrameDefault + 25829 124 org.python.python 0x0000000100b5c454 _PyEval_EvalCodeWithName + 2804 125 org.python.python 0x0000000100b51f44 PyEval_EvalCode + 100 126 org.python.python 0x0000000100b4f332 builtin_exec + 626 127 org.python.python 0x0000000100ac95ff cfunction_vectorcall_FASTCALL + 175 128 org.python.python 0x0000000100b5b60c call_function + 444 129 org.python.python 0x0000000100b58505 _PyEval_EvalFrameDefault + 25829 130 org.python.python 0x0000000100b5c454 _PyEval_EvalCodeWithName + 2804 131 org.python.python 0x0000000100a8d56e _PyFunction_Vectorcall + 270 132 org.python.python 0x0000000100b5b60c call_function + 444 133 org.python.python 0x0000000100b58505 _PyEval_EvalFrameDefault + 25829 134 org.python.python 0x0000000100b5c454 _PyEval_EvalCodeWithName + 2804 135 org.python.python 0x0000000100a8d56e _PyFunction_Vectorcall + 270 136 org.python.python 0x0000000100a8cdad PyVectorcall_Call + 109 137 org.python.python 0x0000000100bbeeb3 pymain_run_module + 195 138 org.python.python 0x0000000100bbe585 Py_RunMain + 1413 139 org.python.python 0x0000000100bbebdf pymain_main + 223 140 org.python.python 0x0000000100bbeaeb Py_Main + 43 141 edu.ucsf.cgl.ChimeraX 0x0000000100a62dc8 main + 120 142 libdyld.dylib 0x00007fff6e0d8cc9 start + 1 Thread 1: 0 libsystem_kernel.dylib 0x00007fff6e21c882 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff6e2dd425 _pthread_cond_wait + 698 2 libopenblas.0.dylib 0x0000000101b8627b blas_thread_server + 507 3 libsystem_pthread.dylib 0x00007fff6e2dd109 _pthread_start + 148 4 libsystem_pthread.dylib 0x00007fff6e2d8b8b thread_start + 15 Thread 2: 0 libsystem_kernel.dylib 0x00007fff6e21c882 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff6e2dd425 _pthread_cond_wait + 698 2 libopenblas.0.dylib 0x0000000101b8627b blas_thread_server + 507 3 libsystem_pthread.dylib 0x00007fff6e2dd109 _pthread_start + 148 4 libsystem_pthread.dylib 0x00007fff6e2d8b8b thread_start + 15 Thread 3: 0 libsystem_kernel.dylib 0x00007fff6e21c882 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff6e2dd425 _pthread_cond_wait + 698 2 libopenblas.0.dylib 0x0000000101b8627b blas_thread_server + 507 3 libsystem_pthread.dylib 0x00007fff6e2dd109 _pthread_start + 148 4 libsystem_pthread.dylib 0x00007fff6e2d8b8b thread_start + 15 Thread 4: 0 libsystem_kernel.dylib 0x00007fff6e21c882 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff6e2dd425 _pthread_cond_wait + 698 2 libopenblas.0.dylib 0x0000000101b8627b blas_thread_server + 507 3 libsystem_pthread.dylib 0x00007fff6e2dd109 _pthread_start + 148 4 libsystem_pthread.dylib 0x00007fff6e2d8b8b thread_start + 15 Thread 5: 0 libsystem_kernel.dylib 0x00007fff6e21c882 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff6e2dd425 _pthread_cond_wait + 698 2 libopenblas.0.dylib 0x0000000101b8627b blas_thread_server + 507 3 libsystem_pthread.dylib 0x00007fff6e2dd109 _pthread_start + 148 4 libsystem_pthread.dylib 0x00007fff6e2d8b8b thread_start + 15 Thread 6:: ThreadPoolServiceThread 0 libsystem_kernel.dylib 0x00007fff6e222b96 kevent64 + 10 1 QtWebEngineCore 0x000000011844fe6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330 2 QtWebEngineCore 0x000000011844fcc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167 3 QtWebEngineCore 0x00000001183d862b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 4 QtWebEngineCore 0x000000011839c7cb base::RunLoop::Run() + 395 5 QtWebEngineCore 0x00000001183e3a94 base::internal::ServiceThread::Run(base::RunLoop*) + 20 6 QtWebEngineCore 0x00000001183f7a7d base::Thread::ThreadMain() + 413 7 QtWebEngineCore 0x0000000118440e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 8 libsystem_pthread.dylib 0x00007fff6e2dd109 _pthread_start + 148 9 libsystem_pthread.dylib 0x00007fff6e2d8b8b thread_start + 15 Thread 7:: ThreadPoolBackgroundWorker 0 libsystem_kernel.dylib 0x00007fff6e219dfa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff6e21a170 mach_msg + 60 2 QtWebEngineCore 0x0000000118445492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x00000001183ed778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56 4 QtWebEngineCore 0x00000001183ee150 base::internal::WorkerThread::RunWorker() + 1024 5 QtWebEngineCore 0x00000001183edc44 base::internal::WorkerThread::RunBackgroundPooledWorker() + 20 6 QtWebEngineCore 0x0000000118440e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 7 libsystem_pthread.dylib 0x00007fff6e2dd109 _pthread_start + 148 8 libsystem_pthread.dylib 0x00007fff6e2d8b8b thread_start + 15 Thread 8:: Chrome_IOThread 0 libsystem_kernel.dylib 0x00007fff6e222b96 kevent64 + 10 1 QtWebEngineCore 0x000000011844fe6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330 2 QtWebEngineCore 0x000000011844fcc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167 3 QtWebEngineCore 0x00000001183d862b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 4 QtWebEngineCore 0x000000011839c7cb base::RunLoop::Run() + 395 5 QtWebEngineCore 0x000000011c31cf06 content::BrowserProcessSubThread::IOThreadRun(base::RunLoop*) + 102 6 QtWebEngineCore 0x00000001183f7a7d base::Thread::ThreadMain() + 413 7 QtWebEngineCore 0x0000000118440e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 8 libsystem_pthread.dylib 0x00007fff6e2dd109 _pthread_start + 148 9 libsystem_pthread.dylib 0x00007fff6e2d8b8b thread_start + 15 Thread 9:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff6e219dfa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff6e21a170 mach_msg + 60 2 QtWebEngineCore 0x0000000118445492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x00000001184452cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x000000011836d1db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171 5 QtWebEngineCore 0x00000001183d862b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 6 QtWebEngineCore 0x000000011839c7cb base::RunLoop::Run() + 395 7 QtWebEngineCore 0x00000001183f7a7d base::Thread::ThreadMain() + 413 8 QtWebEngineCore 0x0000000118440e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 9 libsystem_pthread.dylib 0x00007fff6e2dd109 _pthread_start + 148 10 libsystem_pthread.dylib 0x00007fff6e2d8b8b thread_start + 15 Thread 10:: CompositorTileWorker1 0 libsystem_kernel.dylib 0x00007fff6e21c882 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff6e2dd425 _pthread_cond_wait + 698 2 QtWebEngineCore 0x000000011843ce18 base::ConditionVariable::Wait() + 104 3 QtWebEngineCore 0x00000001196f45f8 non-virtual thunk to cc::SingleThreadTaskGraphRunner::Run() + 56 4 QtWebEngineCore 0x0000000118440e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 5 libsystem_pthread.dylib 0x00007fff6e2dd109 _pthread_start + 148 6 libsystem_pthread.dylib 0x00007fff6e2d8b8b thread_start + 15 Thread 11:: Chrome_InProcGpuThread 0 libsystem_kernel.dylib 0x00007fff6e219dfa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff6e21a170 mach_msg + 60 2 QtWebEngineCore 0x0000000118445492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x000000011836d20f base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 223 4 QtWebEngineCore 0x00000001183d862b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 5 QtWebEngineCore 0x000000011839c7cb base::RunLoop::Run() + 395 6 QtWebEngineCore 0x00000001183f7a7d base::Thread::ThreadMain() + 413 7 QtWebEngineCore 0x0000000118440e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 8 libsystem_pthread.dylib 0x00007fff6e2dd109 _pthread_start + 148 9 libsystem_pthread.dylib 0x00007fff6e2d8b8b thread_start + 15 Thread 12:: Chrome_ChildIOThread 0 libsystem_kernel.dylib 0x00007fff6e222b96 kevent64 + 10 1 QtWebEngineCore 0x000000011844fe6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330 2 QtWebEngineCore 0x000000011844fcc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167 3 QtWebEngineCore 0x00000001183d862b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 4 QtWebEngineCore 0x000000011839c7cb base::RunLoop::Run() + 395 5 QtWebEngineCore 0x00000001183f7a7d base::Thread::ThreadMain() + 413 6 QtWebEngineCore 0x0000000118440e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 7 libsystem_pthread.dylib 0x00007fff6e2dd109 _pthread_start + 148 8 libsystem_pthread.dylib 0x00007fff6e2d8b8b thread_start + 15 Thread 13:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff6e219dfa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff6e21a170 mach_msg + 60 2 QtWebEngineCore 0x0000000118445492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x00000001184452cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x000000011836d1db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171 5 QtWebEngineCore 0x00000001183d862b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 6 QtWebEngineCore 0x000000011839c7cb base::RunLoop::Run() + 395 7 QtWebEngineCore 0x00000001183f7a7d base::Thread::ThreadMain() + 413 8 QtWebEngineCore 0x0000000118440e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 9 libsystem_pthread.dylib 0x00007fff6e2dd109 _pthread_start + 148 10 libsystem_pthread.dylib 0x00007fff6e2d8b8b thread_start + 15 Thread 14:: VizCompositorThread 0 libsystem_kernel.dylib 0x00007fff6e219dfa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff6e21a170 mach_msg + 60 2 QtWebEngineCore 0x0000000118445492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x00000001184452cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x000000011836d1db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171 5 QtWebEngineCore 0x00000001183d862b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 6 QtWebEngineCore 0x000000011839c7cb base::RunLoop::Run() + 395 7 QtWebEngineCore 0x00000001183f7a7d base::Thread::ThreadMain() + 413 8 QtWebEngineCore 0x0000000118440e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 9 libsystem_pthread.dylib 0x00007fff6e2dd109 _pthread_start + 148 10 libsystem_pthread.dylib 0x00007fff6e2d8b8b thread_start + 15 Thread 15:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff6e219dfa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff6e21a170 mach_msg + 60 2 QtWebEngineCore 0x0000000118445492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x00000001184452cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x000000011836d1db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171 5 QtWebEngineCore 0x00000001183d862b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 6 QtWebEngineCore 0x000000011839c7cb base::RunLoop::Run() + 395 7 QtWebEngineCore 0x00000001183f7a7d base::Thread::ThreadMain() + 413 8 QtWebEngineCore 0x0000000118440e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 9 libsystem_pthread.dylib 0x00007fff6e2dd109 _pthread_start + 148 10 libsystem_pthread.dylib 0x00007fff6e2d8b8b thread_start + 15 Thread 16:: ThreadPoolSingleThreadForegroundBlocking0 0 libsystem_kernel.dylib 0x00007fff6e219dfa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff6e21a170 mach_msg + 60 2 QtWebEngineCore 0x0000000118445492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x00000001184452cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x00000001183ed76a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42 5 QtWebEngineCore 0x00000001183ee150 base::internal::WorkerThread::RunWorker() + 1024 6 QtWebEngineCore 0x00000001183edd34 base::internal::WorkerThread::RunDedicatedWorker() + 20 7 QtWebEngineCore 0x0000000118440e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 8 libsystem_pthread.dylib 0x00007fff6e2dd109 _pthread_start + 148 9 libsystem_pthread.dylib 0x00007fff6e2d8b8b thread_start + 15 Thread 17:: MemoryInfra 0 libsystem_kernel.dylib 0x00007fff6e219dfa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff6e21a170 mach_msg + 60 2 QtWebEngineCore 0x0000000118445492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x00000001184452cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x000000011836d1db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171 5 QtWebEngineCore 0x00000001183d862b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 6 QtWebEngineCore 0x000000011839c7cb base::RunLoop::Run() + 395 7 QtWebEngineCore 0x00000001183f7a7d base::Thread::ThreadMain() + 413 8 QtWebEngineCore 0x0000000118440e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 9 libsystem_pthread.dylib 0x00007fff6e2dd109 _pthread_start + 148 10 libsystem_pthread.dylib 0x00007fff6e2d8b8b thread_start + 15 Thread 18:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff6e219dfa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff6e21a170 mach_msg + 60 2 QtWebEngineCore 0x0000000118445492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x00000001184452cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x000000011836d1db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171 5 QtWebEngineCore 0x00000001183d862b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 6 QtWebEngineCore 0x000000011839c7cb base::RunLoop::Run() + 395 7 QtWebEngineCore 0x00000001183f7a7d base::Thread::ThreadMain() + 413 8 QtWebEngineCore 0x0000000118440e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 9 libsystem_pthread.dylib 0x00007fff6e2dd109 _pthread_start + 148 10 libsystem_pthread.dylib 0x00007fff6e2d8b8b thread_start + 15 Thread 19:: com.apple.NSEventThread 0 libsystem_kernel.dylib 0x00007fff6e219dfa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff6e21a170 mach_msg + 60 2 com.apple.CoreFoundation 0x00007fff33ff1ef5 __CFRunLoopServiceMachPort + 247 3 com.apple.CoreFoundation 0x00007fff33ff09c2 __CFRunLoopRun + 1319 4 com.apple.CoreFoundation 0x00007fff33fefe3e CFRunLoopRunSpecific + 462 5 com.apple.AppKit 0x00007fff31403954 _NSEventThread + 132 6 libsystem_pthread.dylib 0x00007fff6e2dd109 _pthread_start + 148 7 libsystem_pthread.dylib 0x00007fff6e2d8b8b thread_start + 15 Thread 20:: ThreadPoolSingleThreadSharedBackgroundBlocking1 0 libsystem_kernel.dylib 0x00007fff6e219dfa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff6e21a170 mach_msg + 60 2 QtWebEngineCore 0x0000000118445492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x00000001184452cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x00000001183ed76a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42 5 QtWebEngineCore 0x00000001183ede3d base::internal::WorkerThread::RunWorker() + 237 6 QtWebEngineCore 0x00000001183edc74 base::internal::WorkerThread::RunBackgroundSharedWorker() + 20 7 QtWebEngineCore 0x0000000118440e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 8 libsystem_pthread.dylib 0x00007fff6e2dd109 _pthread_start + 148 9 libsystem_pthread.dylib 0x00007fff6e2d8b8b thread_start + 15 Thread 21:: ThreadPoolForegroundWorker 0 libsystem_kernel.dylib 0x00007fff6e219dfa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff6e21a170 mach_msg + 60 2 QtWebEngineCore 0x0000000118445492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x00000001183ed778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56 4 QtWebEngineCore 0x00000001183ee150 base::internal::WorkerThread::RunWorker() + 1024 5 QtWebEngineCore 0x00000001183edcd4 base::internal::WorkerThread::RunPooledWorker() + 20 6 QtWebEngineCore 0x0000000118440e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 7 libsystem_pthread.dylib 0x00007fff6e2dd109 _pthread_start + 148 8 libsystem_pthread.dylib 0x00007fff6e2d8b8b thread_start + 15 Thread 22: 0 libsystem_pthread.dylib 0x00007fff6e2d8b68 start_wqthread + 0 Thread 23:: ThreadPoolForegroundWorker 0 libsystem_kernel.dylib 0x00007fff6e219dfa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff6e21a170 mach_msg + 60 2 QtWebEngineCore 0x0000000118445492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x00000001183ed778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56 4 QtWebEngineCore 0x00000001183ee150 base::internal::WorkerThread::RunWorker() + 1024 5 QtWebEngineCore 0x00000001183edcd4 base::internal::WorkerThread::RunPooledWorker() + 20 6 QtWebEngineCore 0x0000000118440e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 7 libsystem_pthread.dylib 0x00007fff6e2dd109 _pthread_start + 148 8 libsystem_pthread.dylib 0x00007fff6e2d8b8b thread_start + 15 Thread 24: 0 libsystem_pthread.dylib 0x00007fff6e2d8b68 start_wqthread + 0 Thread 0 crashed with X86 Thread State (64-bit): rax: 0x0000000000000000 rbx: 0x0000000108419dc0 rcx: 0x00007fa5d5f55a58 rdx: 0x0000000000000000 rdi: 0x0000000000000307 rsi: 0x000000000000000b rbp: 0x00007fa5d5f55a80 rsp: 0x00007fa5d5f55a58 r8: 0x00007fa5d5f55f48 r9: 0x58b07e81a6a031a0 r10: 0x0000000108419dc0 r11: 0x0000000000000246 r12: 0x0000000000000307 r13: 0x0000000000000003 r14: 0x000000000000000b r15: 0x0000000000000016 rip: 0x00007fff6e22033a rfl: 0x0000000000000246 cr2: 0x00007fa5d5f55f48 Logical CPU: 0 Error Code: 0x02000148 Trap Number: 133 Binary Images: 0x100a62000 - 0x100a62ff3 +edu.ucsf.cgl.ChimeraX (1.2.0 - 1.2.0.0) /Applications/ChimeraX-1.2.app/Contents/MacOS/ChimeraX 0x100a6c000 - 0x100ca2ff7 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0x100ea8fff +_json.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_json.cpython-38-darwin.so 0x100eb2000 - 0x100ec6ff7 +_ssl.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_ssl.cpython-38-darwin.so 0x100edf000 - 0x100f37fff +libssl.1.1.dylib (0) /Applications/ChimeraX-1.2.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/libssl.1.1.dylib 0x100f66000 - 0x10117cda7 +libcrypto.1.1.dylib (0) /Applications/ChimeraX-1.2.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/libcrypto.1.1.dylib 0x10121a000 - 0x101227fff +_socket.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_socket.cpython-38-darwin.so 0x101234000 - 0x101237ff7 +select.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/select.cpython-38-darwin.so 0x101241000 - 0x101246fff +_struct.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_struct.cpython-38-darwin.so 0x101253000 - 0x101257fff +binascii.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/binascii.cpython-38-darwin.so 0x101260000 - 0x101263ff7 +_hashlib.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_hashlib.cpython-38-darwin.so 0x10126d000 - 0x101273fff +_blake2.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_blake2.cpython-38-darwin.so 0x10127d000 - 0x10128dfff +_sha3.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_sha3.cpython-38-darwin.so 0x101297000 - 0x1012a6fff +_datetime.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_datetime.cpython-38-darwin.so 0x1012b7000 - 0x1012b7ff7 +_scproxy.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_scproxy.cpython-38-darwin.so 0x1012bf000 - 0x101308fff +_decimal.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_decimal.cpython-38-darwin.so 0x101327000 - 0x101350fff +pyexpat.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/pyexpat.cpython-38-darwin.so 0x101369000 - 0x10136afff +_queue.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_queue.cpython-38-darwin.so 0x101373000 - 0x101389ff7 +_pickle.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_pickle.cpython-38-darwin.so 0x101399000 - 0x10139dff7 +_csv.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_csv.cpython-38-darwin.so 0x1013a7000 - 0x1013a8fff +_posixsubprocess.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_posixsubprocess.cpython-38-darwin.so 0x1013b0000 - 0x101725feb +_multiarray_umath.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/numpy/core/_multiarray_umath.cpython-38-darwin.so 0x10184d000 - 0x1052a49bf +libopenblas.0.dylib (0) /Applications/ChimeraX-1.2.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/numpy/.dylibs/libopenblas.0.dylib 0x105599000 - 0x1056b0ff7 +libgfortran.3.dylib (0) /Applications/ChimeraX-1.2.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/numpy/.dylibs/libgfortran.3.dylib 0x10571e000 - 0x105754fff +libquadmath.0.dylib (0) /Applications/ChimeraX-1.2.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/numpy/.dylibs/libquadmath.0.dylib 0x105768000 - 0x10577dff7 +libgcc_s.1.dylib (0) /Applications/ChimeraX-1.2.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/numpy/.dylibs/libgcc_s.1.dylib 0x10778d000 - 0x10779aff7 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/Applications/ChimeraX-1.2.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/numpy/fft/_pocketfft_internal.cpython-38-darwin.so 0x107828000 - 0x107893ff7 +mtrand.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/numpy/random/mtrand.cpython-38-darwin.so 0x1078ee000 - 0x10790cff3 +bit_generator.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/numpy/random/bit_generator.cpython-38-darwin.so 0x10792d000 - 0x10795fff3 +_common.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/numpy/random/_common.cpython-38-darwin.so 0x10797c000 - 0x1079cbff3 +_bounded_integers.cpython-38-darwin.so (0) 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0x7fff6d282ff7 libsqlite3.dylib (308.6) /usr/lib/libsqlite3.dylib 0x7fff6d376000 - 0x7fff6d3a3ffb libssl.46.dylib (47.140.1) /usr/lib/libssl.46.dylib 0x7fff6d478000 - 0x7fff6d4d2ff8 libusrtcp.dylib (1880.120.4) /usr/lib/libusrtcp.dylib 0x7fff6d4d3000 - 0x7fff6d4d6ffb libutil.dylib (57) /usr/lib/libutil.dylib 0x7fff6d4d7000 - 0x7fff6d4e4ff7 libxar.1.dylib (425.2) /usr/lib/libxar.1.dylib 0x7fff6d4ea000 - 0x7fff6d5ccfff libxml2.2.dylib (33.8) /usr/lib/libxml2.2.dylib 0x7fff6d5d0000 - 0x7fff6d5f8fff libxslt.1.dylib (16.10) /usr/lib/libxslt.1.dylib 0x7fff6d5f9000 - 0x7fff6d60bff3 libz.1.dylib (76) /usr/lib/libz.1.dylib 0x7fff6deba000 - 0x7fff6debfff3 libcache.dylib (83) /usr/lib/system/libcache.dylib 0x7fff6dec0000 - 0x7fff6decbfff libcommonCrypto.dylib (60165.120.1) /usr/lib/system/libcommonCrypto.dylib 0x7fff6decc000 - 0x7fff6ded3fff libcompiler_rt.dylib (101.2) /usr/lib/system/libcompiler_rt.dylib 0x7fff6ded4000 - 0x7fff6deddff7 libcopyfile.dylib (166.40.1) /usr/lib/system/libcopyfile.dylib 0x7fff6dede000 - 0x7fff6df70fdb libcorecrypto.dylib (866.140.1) /usr/lib/system/libcorecrypto.dylib 0x7fff6e07d000 - 0x7fff6e0bdff0 libdispatch.dylib (1173.100.2) /usr/lib/system/libdispatch.dylib 0x7fff6e0be000 - 0x7fff6e0f4fff libdyld.dylib (750.6) /usr/lib/system/libdyld.dylib 0x7fff6e0f5000 - 0x7fff6e0f5ffb libkeymgr.dylib (30) /usr/lib/system/libkeymgr.dylib 0x7fff6e0f6000 - 0x7fff6e102ff3 libkxld.dylib (6153.141.16) /usr/lib/system/libkxld.dylib 0x7fff6e103000 - 0x7fff6e103ff7 liblaunch.dylib (1738.140.2) /usr/lib/system/liblaunch.dylib 0x7fff6e104000 - 0x7fff6e109ff7 libmacho.dylib (959.0.1) /usr/lib/system/libmacho.dylib 0x7fff6e10a000 - 0x7fff6e10cff3 libquarantine.dylib (110.40.3) /usr/lib/system/libquarantine.dylib 0x7fff6e10d000 - 0x7fff6e10eff7 libremovefile.dylib (48) /usr/lib/system/libremovefile.dylib 0x7fff6e10f000 - 0x7fff6e126ff3 libsystem_asl.dylib (377.60.2) /usr/lib/system/libsystem_asl.dylib 0x7fff6e127000 - 0x7fff6e127ff7 libsystem_blocks.dylib (74) /usr/lib/system/libsystem_blocks.dylib 0x7fff6e128000 - 0x7fff6e1affff libsystem_c.dylib (1353.100.2) /usr/lib/system/libsystem_c.dylib 0x7fff6e1b0000 - 0x7fff6e1b3ffb libsystem_configuration.dylib (1061.141.1) /usr/lib/system/libsystem_configuration.dylib 0x7fff6e1b4000 - 0x7fff6e1b7fff libsystem_coreservices.dylib (114) /usr/lib/system/libsystem_coreservices.dylib 0x7fff6e1b8000 - 0x7fff6e1c0fff libsystem_darwin.dylib (1353.100.2) /usr/lib/system/libsystem_darwin.dylib 0x7fff6e1c1000 - 0x7fff6e1c8fff libsystem_dnssd.dylib (1096.100.3) /usr/lib/system/libsystem_dnssd.dylib 0x7fff6e1c9000 - 0x7fff6e1caffb libsystem_featureflags.dylib (17) /usr/lib/system/libsystem_featureflags.dylib 0x7fff6e1cb000 - 0x7fff6e218ff7 libsystem_info.dylib (538) /usr/lib/system/libsystem_info.dylib 0x7fff6e219000 - 0x7fff6e245ff7 libsystem_kernel.dylib (6153.141.16) /usr/lib/system/libsystem_kernel.dylib 0x7fff6e246000 - 0x7fff6e28dfff libsystem_m.dylib (3178) /usr/lib/system/libsystem_m.dylib 0x7fff6e28e000 - 0x7fff6e2b5fff libsystem_malloc.dylib (283.100.6) /usr/lib/system/libsystem_malloc.dylib 0x7fff6e2b6000 - 0x7fff6e2c3ffb libsystem_networkextension.dylib (1095.140.2) /usr/lib/system/libsystem_networkextension.dylib 0x7fff6e2c4000 - 0x7fff6e2cdff7 libsystem_notify.dylib (241.100.2) /usr/lib/system/libsystem_notify.dylib 0x7fff6e2ce000 - 0x7fff6e2d6fef libsystem_platform.dylib (220.100.1) /usr/lib/system/libsystem_platform.dylib 0x7fff6e2d7000 - 0x7fff6e2e1fff libsystem_pthread.dylib (416.100.3) /usr/lib/system/libsystem_pthread.dylib 0x7fff6e2e2000 - 0x7fff6e2e6ff3 libsystem_sandbox.dylib (1217.141.2) /usr/lib/system/libsystem_sandbox.dylib 0x7fff6e2e7000 - 0x7fff6e2e9fff libsystem_secinit.dylib (62.100.2) /usr/lib/system/libsystem_secinit.dylib 0x7fff6e2ea000 - 0x7fff6e2f1ffb libsystem_symptoms.dylib (1238.120.2) /usr/lib/system/libsystem_symptoms.dylib 0x7fff6e2f2000 - 0x7fff6e308ff2 libsystem_trace.dylib (1147.120.1) /usr/lib/system/libsystem_trace.dylib 0x7fff6e30a000 - 0x7fff6e30fff7 libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib 0x7fff6e310000 - 0x7fff6e345ffe libxpc.dylib (1738.140.2) /usr/lib/system/libxpc.dylib External Modification Summary: Calls made by other processes targeting this process: task_for_pid: 198 thread_create: 0 thread_set_state: 0 Calls made by this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by all processes on this machine: task_for_pid: 291898 thread_create: 0 thread_set_state: 0 VM Region Summary: ReadOnly portion of Libraries: Total=1.0G resident=0K(0%) swapped_out_or_unallocated=1.0G(100%) Writable regions: Total=2.5G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=2.5G(100%) VIRTUAL REGION REGION TYPE SIZE COUNT (non-coalesced) =========== ======= ======= Accelerate framework 512K 4 Activity Tracing 256K 1 CG backing stores 1160K 2 CG image 468K 27 CoreAnimation 896K 64 CoreGraphics 8K 1 CoreImage 40K 4 CoreUI image data 4052K 36 Foundation 28K 2 Kernel Alloc Once 1036K 2 MALLOC 2.1G 1430 MALLOC guard page 32K 8 MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated) Mach message 24K 3 OpenGL GLSL 384K 5 STACK GUARD 96K 24 Stack 140.2M 25 Stack Guard 56.0M 1 VM_ALLOCATE 331.5M 305 __DATA 66.5M 569 __DATA_CONST 128K 6 __FONT_DATA 4K 1 __GLSLBUILTINS 5176K 1 __LINKEDIT 481.5M 152 __OBJC_RO 32.3M 1 __OBJC_RW 1908K 2 __TEXT 572.6M 532 __UNICODE 564K 1 mapped file 394.4M 55 shared memory 2840K 24 =========== ======= ======= TOTAL 4.1G 3289 TOTAL, minus reserved VM space 4.1G 3289 System Profile: Network Service: Wi-Fi, AirPort, en0 bridge_os_version: Bridge OS 5.2 (18P4347) Boot Volume File System Type: apfs bridge_model: iBridge2,3 Memory Module: BANK 0/ChannelA-DIMM0, 8 GB, DDR4, 2400 MHz, Micron, 8ATF1G64HZ-2G6E1 Memory Module: BANK 2/ChannelB-DIMM0, 8 GB, DDR4, 2400 MHz, Micron, 8ATF1G64HZ-2G6E1 USB Device: USB3.0 Hub USB Device: USB 10/100/1000 LAN USB Device: Mass Storage Device USB Device: USB3.0 Hub USB Device: USB3.0 Hub USB Device: USB 3.1 Bus USB Device: USB2.0 Hub USB Device: USB 2.0 BILLBOARD USB Device: USB2.0 Hub USB Device: Varmilo USB Device: G PRO Gaming Mouse USB Device: USB2.0 Hub USB Device: Apple T2 Bus USB Device: Touch Bar Backlight USB Device: Touch Bar Display USB Device: Apple Internal Keyboard / Trackpad USB Device: Headset USB Device: Ambient Light Sensor USB Device: FaceTime HD Camera (Built-in) USB Device: Apple T2 Controller Thunderbolt Bus: MacBook Pro, Apple Inc., 47.4 Thunderbolt Bus: MacBook Pro, Apple Inc., 47.4 Model: MacBookPro15,1, BootROM 1554.80.3.0.0 (iBridge: 18.16.14347.0.0,0), 6 processors, 6-Core Intel Core i7, 2.6 GHz, 16 GB, SMC Graphics: kHW_IntelUHDGraphics630Item, Intel UHD Graphics 630, spdisplays_builtin Graphics: kHW_AMDRadeonPro560XItem, Radeon Pro 560X, spdisplays_pcie_device, 4 GB AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x7BF), wl0: Oct 28 2020 13:06:41 version 9.30.357.42.32.5.48 FWID 01-4f9e2d7c Bluetooth: Version 7.0.6f8, 3 services, 27 devices, 1 incoming serial ports Log: UCSF ChimeraX version: 1.2 (2021-04-27) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 ATI-3.10.19 OpenGL renderer: AMD Radeon Pro 560X OpenGL Engine OpenGL vendor: ATI Technologies Inc.Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro15,1 Processor Name: 6-Core Intel Core i7 Processor Speed: 2.6 GHz Number of Processors: 1 Total Number of Cores: 6 L2 Cache (per Core): 256 KB L3 Cache: 9 MB Hyper-Threading Technology: Enabled Memory: 16 GB Boot ROM Version: 1554.80.3.0.0 (iBridge: 18.16.14347.0.0,0) Software: System Software Overview: System Version: macOS 10.15.7 (19H524) Kernel Version: Darwin 19.6.0 Time since boot: 6 days 21:05 Graphics/Displays: Intel UHD Graphics 630: Chipset Model: Intel UHD Graphics 630 Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x3e9b Revision ID: 0x0000 Automatic Graphics Switching: Supported gMux Version: 5.0.0 Metal: Supported, feature set macOS GPUFamily2 v1 Radeon Pro 560X: Chipset Model: Radeon Pro 560X Type: GPU Bus: PCIe PCIe Lane Width: x8 VRAM (Total): 4 GB Vendor: AMD (0x1002) Device ID: 0x67ef Revision ID: 0x00c2 ROM Revision: 113-C980AL-075 VBIOS Version: 113-C97501U-005 EFI Driver Version: 01.A1.075 Automatic Graphics Switching: Supported gMux Version: 5.0.0 Metal: Supported, feature set macOS GPUFamily2 v1 Displays: G237HL: Resolution: 1920 x 1080 (1080p FHD - Full High Definition) UI Looks like: 1920 x 1080 @ 60 Hz Framebuffer Depth: 30-Bit Color (ARGB2101010) Display Serial Number: T0MAA0012400 Main Display: Yes Mirror: Off Online: Yes Rotation: Supported Automatically Adjust Brightness: No Connection Type: DVI or HDMI Adapter Firmware Version: 7.55 Locale: (None, 'UTF-8') PyQt5 5.15.2, Qt 5.15.2 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 appnope: 0.1.2 Babel: 2.9.0 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2020.12.5 cftime: 1.4.1 chardet: 3.0.4 ChimeraX-AddCharge: 1.0 ChimeraX-AddH: 2.1.6 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.13.3 ChimeraX-AtomicLibrary: 3.1.2 ChimeraX-AtomSearch: 2.0 ChimeraX-AtomSearchLibrary: 1.0 ChimeraX-AxesPlanes: 2.0 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 1.1 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.5.2 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.1 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.1 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.1 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.2.1 ChimeraX-CommandLine: 1.1.3 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.2 ChimeraX-CoreFormats: 1.0 ChimeraX-coulombic: 1.1.1 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0 ChimeraX-DataFormats: 1.1 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1.1 ChimeraX-DistUI: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.0 ChimeraX-Hbonds: 2.1 ChimeraX-Help: 1.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.0 ChimeraX-ImageFormats: 1.1 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-Label: 1.0 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.1 ChimeraX-Map: 1.0.2 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.0 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 1.2 ChimeraX-MDcrds: 2.2 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.3 ChimeraX-MMTF: 2.1 ChimeraX-Modeller: 1.0.1 ChimeraX-ModelPanel: 1.0.1 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.1 ChimeraX-OpenCommand: 1.5 ChimeraX-PDB: 2.4.1 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0.1 ChimeraX-PubChem: 2.0.1 ChimeraX-ReadPbonds: 1.0 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.4 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SeqView: 2.3 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.0 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.0.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.3.1 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.0.1 ChimeraX-ToolshedUtils: 1.2 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.7.3 ChimeraX-uniprot: 2.1 ChimeraX-UnitCell: 1.0 ChimeraX-ViewDockX: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.3 comtypes: 1.1.7 cxservices: 1.0 cycler: 0.10.0 Cython: 0.29.21 decorator: 5.0.7 distlib: 0.3.1 docutils: 0.16 filelock: 3.0.12 funcparserlib: 0.3.6 grako: 3.16.5 h5py: 2.10.0 html2text: 2020.1.16 idna: 2.10 ihm: 0.17 imagecodecs: 2020.5.30 imagesize: 1.2.0 ipykernel: 5.3.4 ipython: 7.18.1 ipython-genutils: 0.2.0 jedi: 0.17.2 Jinja2: 2.11.2 jupyter-client: 6.1.7 jupyter-core: 4.7.1 kiwisolver: 1.3.1 line-profiler: 2.1.2 lxml: 4.6.2 lz4: 3.1.0 MarkupSafe: 1.1.1 matplotlib: 3.3.2 msgpack: 1.0.0 netCDF4: 1.5.4 networkx: 2.5 numexpr: 2.7.3 numpy: 1.19.2 numpydoc: 1.1.0 openvr: 1.14.1501 packaging: 20.9 ParmEd: 3.2.0 parso: 0.7.1 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 7.2.0 pip: 21.0.1 pkginfo: 1.5.0.1 prompt-toolkit: 3.0.18 psutil: 5.7.2 ptyprocess: 0.7.0 pycollada: 0.7.1 pydicom: 2.0.0 Pygments: 2.7.1 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 2.4.7 PyQt5-commercial: 5.15.2 PyQt5-sip: 12.8.1 PyQtWebEngine-commercial: 5.15.2 python-dateutil: 2.8.1 pytz: 2021.1 pyzmq: 22.0.3 qtconsole: 4.7.7 QtPy: 1.9.0 RandomWords: 0.3.0 requests: 2.24.0 scipy: 1.5.2 setuptools: 50.3.2 sfftk-rw: 0.6.7.dev1 six: 1.15.0 snowballstemmer: 2.1.0 sortedcontainers: 2.2.2 Sphinx: 3.2.1 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 1.0.3 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.4 suds-jurko: 0.6 tables: 3.6.1 tifffile: 2020.9.3 tinyarray: 1.2.3 tornado: 6.1 traitlets: 5.0.5 urllib3: 1.25.11 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.36.0 wheel-filename: 1.3.0 }}} " defect closed normal Core can't reproduce chimera-programmers all ChimeraX