Changes between Initial Version and Version 1 of Ticket #5578, comment 6


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Timestamp:
Nov 17, 2021, 8:35:44 PM (4 years ago)
Author:
Tom Goddard

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  • Ticket #5578, comment 6

    initial v1  
    1 I ran a prediction of a dimer pdb 7e40 chains A,B using the new AlphaFold 2.1 databases installed by Jason Shi, successfully completed in 2.5 hours using qsub.  Was getting memory errors within the first few minutes
    2 until I added NVIDIA_VISIBLE_DEVICES in addition to CUDA_VISIBLE_DEVICES environment variable.  Seemed like it might have been trying to use the wrong GPU.
     1I ran a prediction of a dimer pdb 7e40 chains A,B using the new AlphaFold 2.1 databases installed by Jason Shi, successfully completed in 2.5 hours using qsub.  Was getting memory errors within the first few minutes until I added NVIDIA_VISIBLE_DEVICES in addition to CUDA_VISIBLE_DEVICES environment variable.  Seemed like it might have been trying to use the wrong GPU.  Also needed to add a mount (singularity -B option) of the older AlphaFold 2.0 databases since the newer ones have some symbolic links to the older ones.
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