Changes between Initial Version and Version 1 of Ticket #5901


Ignore:
Timestamp:
Jan 11, 2022, 9:44:25 AM (4 years ago)
Author:
Eric Pettersen
Comment:

Legend:

Unmodified
Added
Removed
Modified

  • Ticket #5901

    • Property Cc Tom Goddard added
    • Property Component Unassigned → Core
    • Property Owner set to Eric Pettersen
    • Property Platform → all
    • Property Project → ChimeraX
    • Property Status new → accepted
    • Property Summary ChimeraX bug report submission → Unknown crash with unformatted stack trace

  • Ticket #5901 – Description

    initial v1  
    66Last time you used ChimeraX it crashed.
    77Please describe steps that led to the crash here.
     8
     9
     10{"app_name":"ChimeraX","timestamp":"2022-01-11 18:29:12.00 +0100","app_version":"","slice_uuid":"9596eff5-d2be-396c-9c4e-6177235c3dae","build_version":"","platform":1,"share_with_app_devs":0,"is_first_party":1,"bug_type":"309","os_version":"macOS 12.1 (21C52)","incident_id":"A1486F10-2BAF-4E0F-AE32-53446BD6A603","name":"ChimeraX"}
     11{
     12  "uptime" : 29000,
     13  "procLaunch" : "2022-01-11 14:34:19.1995 +0100",
     14  "procRole" : "Background",
     15  "version" : 2,
     16  "userID" : 501,
     17  "deployVersion" : 210,
     18  "modelCode" : "MacBookAir10,1",
     19  "procStartAbsTime" : 369270759689,
     20  "coalitionID" : 2485,
     21  "osVersion" : {
     22    "train" : "macOS 12.1",
     23    "build" : "21C52",
     24    "releaseType" : "User"
     25  },
     26  "captureTime" : "2022-01-11 18:29:05.9470 +0100",
     27  "incident" : "A1486F10-2BAF-4E0F-AE32-53446BD6A603",
     28  "bug_type" : "309",
     29  "pid" : 2554,
     30  "procExitAbsTime" : 706848799009,
     31  "translated" : true,
     32  "cpuType" : "X86-64",
     33  "procName" : "ChimeraX",
     34  "procPath" : "\/private\/var\/folders\/*\/ChimeraX-1.3.app\/Contents\/MacOS\/ChimeraX",
     35  "parentProc" : "launchd",
     36  "parentPid" : 1,
     37  "coalitionName" : "edu.ucsf.cgl.ChimeraX",
     38  "crashReporterKey" : "622E5DB9-E767-AF7C-74C7-74FD2919A297",
     39  "wakeTime" : 10388,
     40  "sleepWakeUUID" : "9BAC81B1-A565-442A-B904-544455BE975B",
     41  "sip" : "enabled",
     42  "vmRegionInfo" : "0x1090a3320 is in 0x108ea8000-0x10910d000;  bytes after start: 2077472  bytes before end: 433375\n      REGION TYPE                    START - END         [ VSIZE] PRT\/MAX SHRMOD  REGION DETAIL\n      Rosetta Generic             108ea7000-108ea8000    [    4K] rw-\/rwx SM=PRV  \n--->  mapped file                 108ea8000-10910d000    [ 2452K] r-x\/rwx SM=COW  ...t_id=b3af96b7\n      mapped file                 10910d000-109147000    [  232K] rw-\/rwx SM=COW  ...t_id=b386a9b7",
     43  "isCorpse" : 1,
     44  "exception" : {"codes":"0x000000000000000a, 0x00000001090a3320","rawCodes":[10,4446630688],"type":"EXC_BAD_ACCESS","signal":"SIGBUS","subtype":"KERN_MEMORY_ERROR at 0x00000001090a3320"},
     45  "termination" : {"flags":0,"code":10,"namespace":"SIGNAL","indicator":"Bus error: 10","byProc":"exc handler","byPid":2554},
     46  "ktriageinfo" : "VM - Object is not alive\nVM - Object is not alive\nVM - Object is not alive\n",
     47  "vmregioninfo" : "0x1090a3320 is in 0x108ea8000-0x10910d000;  bytes after start: 2077472  bytes before end: 433375\n      REGION TYPE                    START - END         [ VSIZE] PRT\/MAX SHRMOD  REGION DETAIL\n      Rosetta Generic             108ea7000-108ea8000    [    4K] rw-\/rwx SM=PRV  \n--->  mapped file                 108ea8000-10910d000    [ 2452K] r-x\/rwx SM=COW  ...t_id=b3af96b7\n      mapped file                 10910d000-109147000    [  232K] rw-\/rwx SM=COW  ...t_id=b386a9b7",
     48  "extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0},
     49  "faultingThread" : 8,
     50  "threads" : 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     112  "vmSummary" : "ReadOnly portion of Libraries: Total=206.0M resident=0K(0%) swapped_out_or_unallocated=206.0M(100%)\nWritable regions: Total=3.7G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=3.7G(100%)\n\n                                VIRTUAL   REGION \nREGION TYPE                        SIZE    COUNT (non-coalesced) \n===========                     =======  ======= \nAccelerate framework              1792K       14 \nActivity Tracing                   256K        1 \nCG backing stores                 2944K        8 \nCG image                           476K       88 \nColorSync                          244K       29 \nCoreAnimation                      952K       91 \nCoreGraphics                        16K        3 \nCoreUI image data                 5256K       71 \nFoundation                          16K        1 \nKernel Alloc Once                 1456K        7 \nMALLOC                             1.9G      183 \nMALLOC guard page                  192K        9 \nMALLOC_MEDIUM (reserved)         560.0M        7         reserved VM address space (unallocated)\nMALLOC_NANO (reserved)           256.0M        1         reserved VM address space (unallocated)\nMach message                        24K        6 \nOpenGL GLSL                        384K        5 \nRosetta Arena                     4096K        2 \nRosetta Generic                   2056K      511 \nRosetta IndirectBranch            2048K        1 \nRosetta JIT                      128.0M        1 \nRosetta Return Stack              1160K      116 \nRosetta Thread Context            1160K      116 \nSTACK GUARD                         44K       11 \nStack                            505.8M       59 \nStack Guard                       56.2M       48 \nVM_ALLOCATE                      258.8M      288 \nVM_ALLOCATE (reserved)            96.1M       13         reserved VM address space (unallocated)\n__DATA                             355K       45 \n__DATA_CONST                      3031K       39 \n__DATA_DIRTY                        79K       24 \n__LINKEDIT                       193.1M        7 \n__OBJC_RO                         81.8M        1 \n__OBJC_RW                         3136K        2 \n__TEXT                            12.9M       50 \n__UNICODE                          588K        1 \ndyld private memory               1024K        1 \nmapped file                        6.9G     1042 \nshared memory                     4340K       37 \nunshared pmap                     11.1M        7 \n===========                     =======  ======= \nTOTAL                             10.9G     2946 \nTOTAL, minus reserved VM space    10.0G     2946 \n",
     113  "legacyInfo" : {
     114  "threadTriggered" : {
     115    "name" : "VizCompositorThread"
     116  }
     117},
     118  "trialInfo" : {
     119  "rollouts" : [
     120    {
     121      "rolloutId" : "60da5e84ab0ca017dace9abf",
     122      "factorPackIds" : {
     123
     124      },
     125      "deploymentId" : 240000008
     126    },
     127    {
     128      "rolloutId" : "607844aa04477260f58a8077",
     129      "factorPackIds" : {
     130        "SIRI_MORPHUN_ASSETS" : "6103050cbfe6dc472e1c982a"
     131      },
     132      "deploymentId" : 240000066
     133    },
     134    {
     135      "rolloutId" : "602ad4dac86151000cf27e46",
     136      "factorPackIds" : {
     137        "SIRI_DICTATION_ASSETS" : "61a80a438feb033580c2778b"
     138      },
     139      "deploymentId" : 240000290
     140    },
     141    {
     142      "rolloutId" : "5fc94383418129005b4e9ae0",
     143      "factorPackIds" : {
     144
     145      },
     146      "deploymentId" : 240000196
     147    },
     148    {
     149      "rolloutId" : "601d9415f79519000ccd4b69",
     150      "factorPackIds" : {
     151        "SIRI_TEXT_TO_SPEECH" : "61c11dcd2cb6041dc630dc63"
     152      },
     153      "deploymentId" : 240000357
     154    },
     155    {
     156      "rolloutId" : "5ffde50ce2aacd000d47a95f",
     157      "factorPackIds" : {
     158
     159      },
     160      "deploymentId" : 240000090
     161    }
     162  ],
     163  "experiments" : [
     164
     165  ]
     166}
     167}
     168===== Log before crash start =====
     169Startup Messages 
     170--- 
     171note | available bundle cache has not been initialized yet 
     172 
     173UCSF ChimeraX version: 1.3 (2021-12-08) 
     174© 2016-2021 Regents of the University of California. All rights reserved. 
     175How to cite UCSF ChimeraX 
     176
     177> help help:quickstart
     178
     179> open /Users/dramalhassan/Downloads/robetta_models_180015.pdb
     180
     181Summary of feedback from opening
     182/Users/dramalhassan/Downloads/robetta_models_180015.pdb 
     183--- 
     184warnings | Ignored bad PDB record found on line 1 
     185REMARK ID 180015 MODEL 1 ADAM12 
     186 
     187Ignored bad PDB record found on line 2 
     188PFRMAT TS 
     189 
     190Ignored bad PDB record found on line 3 
     191TARGET ADAM12 
     192 
     193Ignored bad PDB record found on line 5 
     194METHOD ROSETTA provides both ab initio and 
     195 
     196Ignored bad PDB record found on line 6 
     197METHOD comparative models of protein domains. 
     198 
     19975 messages similar to the above omitted 
     200 
     201Chain information for robetta_models_180015.pdb 
     202--- 
     203Chain | Description 
     2041.1/A 1.2/A 1.3/A 1.4/A 1.5/A | No description available 
     205 
     206
     207> hide #1.1 models
     208
     209> hide #1.2 models
     210
     211> show #1.1 models
     212
     213> show #1.2 models
     214
     215> hide #1.1 models
     216
     217> hide #1.2 models
     218
     219> hide #1.3 models
     220
     221> hide #1.4 models
     222
     223> hide #1.5 models
     224
     225> hide #!1 models
     226
     227> show #1.1 models
     228
     229> show #1.2 models
     230
     231> show #1.3 models
     232
     233> show #1.4 models
     234
     235> show #1.5 models
     236
     237> hide #1.4 models
     238
     239> hide #1.3 models
     240
     241> hide #1.2 models
     242
     243> hide #1.5 models
     244
     245> color #1.1 bychain
     246
     247> color #1.1 bypolymer
     248
     249> rainbow #1.1
     250
     251> mlp #1.1
     252
     253Map values for surface "robetta_models_180015.pdb_A SES surface": minimum
     254-27.31, mean -3.341, maximum 28.2 
     255To also show corresponding color key, enter the above mlp command and add key
     256true 
     257
     258> coulombic #!1.1
     259
     260Using Amber 20 recommended default charges and atom types for standard
     261residues 
     262Coulombic values for robetta_models_180015.pdb_A SES surface #1.1.1: minimum,
     263-20.65, mean 1.21, maximum 23.36 
     264To also show corresponding color key, enter the above coulombic command and
     265add key true 
     266
     267> coulombic #!1.1
     268
     269Coulombic values for robetta_models_180015.pdb_A SES surface #1.1.1: minimum,
     270-20.65, mean 1.21, maximum 23.36 
     271To also show corresponding color key, enter the above coulombic command and
     272add key true 
     273
     274> color bfactor #!1.1
     275
     27613828 atoms, 909 residues, 1 surfaces, atom bfactor range 0.62 to 24.6 
     277
     278> color bfactor #!1.1
     279
     28013828 atoms, 909 residues, 1 surfaces, atom bfactor range 0.62 to 24.6 
     281
     282> color #!1.1 byhetero
     283
     284> select #1.5
     285
     28613828 atoms, 13989 bonds, 909 residues, 1 model selected 
     287
     288> style #!1.1 stick
     289
     290Changed 13828 atom styles 
     291
     292> style #!1.1 stick
     293
     294Changed 13828 atom styles 
     295
     296> rainbow #!1.1
     297
     298> color #!1.1 bypolymer
     299
     300> rainbow #!1.1
     301
     302> color bfactor #!1.1
     303
     30413828 atoms, 909 residues, 1 surfaces, atom bfactor range 0.62 to 24.6 
     305
     306> show #!1.1 atoms
     307
     308> hide #!1.1 atoms
     309
     310> show #!1.1 atoms
     311
     312> style #!1.1 stick
     313
     314Changed 13828 atom styles 
     315
     316> style #!1.1 ball
     317
     318Changed 13828 atom styles 
     319
     320> style #!1.1 sphere
     321
     322Changed 13828 atom styles 
     323
     324> color #!1.1 bychain
     325
     326> color #!1.1 byhetero
     327
     328> color #!1.1 bypolymer
     329
     330> rainbow #!1.1
     331
     332> coulombic #!1.1
     333
     334Coulombic values for robetta_models_180015.pdb_A SES surface #1.1.1: minimum,
     335-20.65, mean 1.21, maximum 23.36 
     336To also show corresponding color key, enter the above coulombic command and
     337add key true 
     338
     339> nucleotides #!1.1 atoms
     340
     341> style nucleic & #!1.1 stick
     342
     343Changed 0 atom styles 
     344
     345> nucleotides #!1.1 atoms
     346
     347> style nucleic & #!1.1 stick
     348
     349Changed 0 atom styles 
     350
     351> nucleotides #!1.1 atoms
     352
     353> style nucleic & #!1.1 stick
     354
     355Changed 0 atom styles 
     356
     357> show #!1.1 surfaces
     358
     359> hide #!1.1 surfaces
     360
     361> style #!1.1 sphere
     362
     363Changed 13828 atom styles 
     364
     365> interfaces #!1.1 & ~solvent
     366
     3670 buried areas: 
     368
     369> ui tool show AlphaFold
     370
     371> alphafold search #1.1
     372
     373> alphafold predict #1.1
     374
     375ChimeraX REST job id: job_5e6fidd8 
     376Running AlphaFold prediction 
     377BlastProtein finished. 
     378Parsing BLAST results. 
     379Running AlphaFold prediction 
     380
     381
     382===== Log before crash end =====
     383
     384Log:
     385UCSF ChimeraX version: 1.3 (2021-12-08) 
     386© 2016-2021 Regents of the University of California. All rights reserved. 
     387How to cite UCSF ChimeraX 
     388
     389
     390
     391
     392OpenGL version: 4.1 Metal - 76.3
     393OpenGL renderer: Apple M1
     394OpenGL vendor: AppleHardware:
     395
     396    Hardware Overview:
     397
     398      Model Name: MacBook Air
     399      Model Identifier: MacBookAir10,1
     400      Processor Name: Unknown
     401      Processor Speed: 2,4 GHz
     402      Number of Processors: 1
     403      Total Number of Cores: 8
     404      L2 Cache: 8 MB
     405      Memory: 8 GB
     406
     407Software:
     408
     409    System Software Overview:
     410
     411      System Version: macOS 12.1 (21C52)
     412      Kernel Version: Darwin 21.2.0
     413      Time since boot: 19:29
     414
     415Graphics/Displays:
     416
     417    Apple G13G:
     418
     419      Chipset Model: Apple G13G
     420      Type: GPU
     421      Bus: Built-In
     422      Total Number of Cores: 7
     423      Vendor: Apple (0x106b)
     424      Metal Family: Supported, Metal GPUFamily Apple 7
     425      Displays:
     426        DELL S2721HS:
     427          Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
     428          UI Looks like: 1920 x 1080 @ 60.00Hz
     429          Main Display: Yes
     430          Mirror: Off
     431          Online: Yes
     432          Automatically Adjust Brightness: Yes
     433        Color LCD:
     434          Display Type: Built-In Retina LCD
     435          Resolution: 2560 x 1600 Retina
     436          Mirror: Off
     437          Online: Yes
     438          Automatically Adjust Brightness: No
     439          Connection Type: Internal
     440
     441Locale: (None, 'UTF-8')
     442PyQt5 5.15.2, Qt 5.15.2
     443Installed Packages:
     444    alabaster: 0.7.12
     445    appdirs: 1.4.4
     446    appnope: 0.1.2
     447    Babel: 2.9.1
     448    backcall: 0.2.0
     449    blockdiag: 2.0.1
     450    certifi: 2021.5.30
     451    cftime: 1.5.1.1
     452    charset-normalizer: 2.0.9
     453    ChimeraX-AddCharge: 1.2.2
     454    ChimeraX-AddH: 2.1.11
     455    ChimeraX-AlignmentAlgorithms: 2.0
     456    ChimeraX-AlignmentHdrs: 3.2
     457    ChimeraX-AlignmentMatrices: 2.0
     458    ChimeraX-Alignments: 2.2.3
     459    ChimeraX-AlphaFold: 1.0
     460    ChimeraX-AltlocExplorer: 1.0.1
     461    ChimeraX-AmberInfo: 1.0
     462    ChimeraX-Arrays: 1.0
     463    ChimeraX-Atomic: 1.31
     464    ChimeraX-AtomicLibrary: 4.2
     465    ChimeraX-AtomSearch: 2.0
     466    ChimeraX-AtomSearchLibrary: 1.0
     467    ChimeraX-AxesPlanes: 2.0
     468    ChimeraX-BasicActions: 1.1
     469    ChimeraX-BILD: 1.0
     470    ChimeraX-BlastProtein: 2.0
     471    ChimeraX-BondRot: 2.0
     472    ChimeraX-BugReporter: 1.0
     473    ChimeraX-BuildStructure: 2.6.1
     474    ChimeraX-Bumps: 1.0
     475    ChimeraX-BundleBuilder: 1.1
     476    ChimeraX-ButtonPanel: 1.0
     477    ChimeraX-CageBuilder: 1.0
     478    ChimeraX-CellPack: 1.0
     479    ChimeraX-Centroids: 1.2
     480    ChimeraX-ChemGroup: 2.0
     481    ChimeraX-Clashes: 2.2.2
     482    ChimeraX-ColorActions: 1.0
     483    ChimeraX-ColorGlobe: 1.0
     484    ChimeraX-ColorKey: 1.5
     485    ChimeraX-CommandLine: 1.1.5
     486    ChimeraX-ConnectStructure: 2.0
     487    ChimeraX-Contacts: 1.0
     488    ChimeraX-Core: 1.3
     489    ChimeraX-CoreFormats: 1.1
     490    ChimeraX-coulombic: 1.3.2
     491    ChimeraX-Crosslinks: 1.0
     492    ChimeraX-Crystal: 1.0
     493    ChimeraX-CrystalContacts: 1.0
     494    ChimeraX-DataFormats: 1.2.2
     495    ChimeraX-Dicom: 1.0
     496    ChimeraX-DistMonitor: 1.1.5
     497    ChimeraX-DistUI: 1.0
     498    ChimeraX-Dssp: 2.0
     499    ChimeraX-EMDB-SFF: 1.0
     500    ChimeraX-ExperimentalCommands: 1.0
     501    ChimeraX-FileHistory: 1.0
     502    ChimeraX-FunctionKey: 1.0
     503    ChimeraX-Geometry: 1.1
     504    ChimeraX-gltf: 1.0
     505    ChimeraX-Graphics: 1.1
     506    ChimeraX-Hbonds: 2.1.2
     507    ChimeraX-Help: 1.2
     508    ChimeraX-HKCage: 1.3
     509    ChimeraX-IHM: 1.1
     510    ChimeraX-ImageFormats: 1.2
     511    ChimeraX-IMOD: 1.0
     512    ChimeraX-IO: 1.0.1
     513    ChimeraX-ItemsInspection: 1.0
     514    ChimeraX-Label: 1.1
     515    ChimeraX-ListInfo: 1.1.1
     516    ChimeraX-Log: 1.1.4
     517    ChimeraX-LookingGlass: 1.1
     518    ChimeraX-Maestro: 1.8.1
     519    ChimeraX-Map: 1.1
     520    ChimeraX-MapData: 2.0
     521    ChimeraX-MapEraser: 1.0
     522    ChimeraX-MapFilter: 2.0
     523    ChimeraX-MapFit: 2.0
     524    ChimeraX-MapSeries: 2.1
     525    ChimeraX-Markers: 1.0
     526    ChimeraX-Mask: 1.0
     527    ChimeraX-MatchMaker: 2.0.4
     528    ChimeraX-MDcrds: 2.6
     529    ChimeraX-MedicalToolbar: 1.0.1
     530    ChimeraX-Meeting: 1.0
     531    ChimeraX-MLP: 1.1
     532    ChimeraX-mmCIF: 2.4
     533    ChimeraX-MMTF: 2.1
     534    ChimeraX-Modeller: 1.2.6
     535    ChimeraX-ModelPanel: 1.2.1
     536    ChimeraX-ModelSeries: 1.0
     537    ChimeraX-Mol2: 2.0
     538    ChimeraX-Morph: 1.0
     539    ChimeraX-MouseModes: 1.1
     540    ChimeraX-Movie: 1.0
     541    ChimeraX-Neuron: 1.0
     542    ChimeraX-Nucleotides: 2.0.2
     543    ChimeraX-OpenCommand: 1.7
     544    ChimeraX-PDB: 2.6.5
     545    ChimeraX-PDBBio: 1.0
     546    ChimeraX-PDBLibrary: 1.0.2
     547    ChimeraX-PDBMatrices: 1.0
     548    ChimeraX-PickBlobs: 1.0
     549    ChimeraX-Positions: 1.0
     550    ChimeraX-PresetMgr: 1.0.1
     551    ChimeraX-PubChem: 2.1
     552    ChimeraX-ReadPbonds: 1.0.1
     553    ChimeraX-Registration: 1.1
     554    ChimeraX-RemoteControl: 1.0
     555    ChimeraX-ResidueFit: 1.0
     556    ChimeraX-RestServer: 1.1
     557    ChimeraX-RNALayout: 1.0
     558    ChimeraX-RotamerLibMgr: 2.0.1
     559    ChimeraX-RotamerLibsDunbrack: 2.0
     560    ChimeraX-RotamerLibsDynameomics: 2.0
     561    ChimeraX-RotamerLibsRichardson: 2.0
     562    ChimeraX-SaveCommand: 1.5
     563    ChimeraX-SchemeMgr: 1.0
     564    ChimeraX-SDF: 2.0
     565    ChimeraX-Segger: 1.0
     566    ChimeraX-Segment: 1.0
     567    ChimeraX-SelInspector: 1.0
     568    ChimeraX-SeqView: 2.4.6
     569    ChimeraX-Shape: 1.0.1
     570    ChimeraX-Shell: 1.0
     571    ChimeraX-Shortcuts: 1.1
     572    ChimeraX-ShowAttr: 1.0
     573    ChimeraX-ShowSequences: 1.0
     574    ChimeraX-SideView: 1.0
     575    ChimeraX-Smiles: 2.1
     576    ChimeraX-SmoothLines: 1.0
     577    ChimeraX-SpaceNavigator: 1.0
     578    ChimeraX-StdCommands: 1.6.1
     579    ChimeraX-STL: 1.0
     580    ChimeraX-Storm: 1.0
     581    ChimeraX-Struts: 1.0
     582    ChimeraX-Surface: 1.0
     583    ChimeraX-SwapAA: 2.0
     584    ChimeraX-SwapRes: 2.1
     585    ChimeraX-TapeMeasure: 1.0
     586    ChimeraX-Test: 1.0
     587    ChimeraX-Toolbar: 1.1
     588    ChimeraX-ToolshedUtils: 1.2
     589    ChimeraX-Tug: 1.0
     590    ChimeraX-UI: 1.13.7
     591    ChimeraX-uniprot: 2.2
     592    ChimeraX-UnitCell: 1.0
     593    ChimeraX-ViewDockX: 1.0.1
     594    ChimeraX-VIPERdb: 1.0
     595    ChimeraX-Vive: 1.1
     596    ChimeraX-VolumeMenu: 1.0
     597    ChimeraX-VTK: 1.0
     598    ChimeraX-WavefrontOBJ: 1.0
     599    ChimeraX-WebCam: 1.0
     600    ChimeraX-WebServices: 1.0
     601    ChimeraX-Zone: 1.0
     602    colorama: 0.4.4
     603    cxservices: 1.1
     604    cycler: 0.11.0
     605    Cython: 0.29.24
     606    decorator: 5.1.0
     607    docutils: 0.17.1
     608    filelock: 3.0.12
     609    funcparserlib: 0.3.6
     610    grako: 3.16.5
     611    h5py: 3.6.0
     612    html2text: 2020.1.16
     613    idna: 3.3
     614    ihm: 0.21
     615    imagecodecs: 2021.4.28
     616    imagesize: 1.3.0
     617    ipykernel: 5.5.5
     618    ipython: 7.23.1
     619    ipython-genutils: 0.2.0
     620    jedi: 0.18.0
     621    Jinja2: 3.0.1
     622    jupyter-client: 6.1.12
     623    jupyter-core: 4.9.1
     624    kiwisolver: 1.3.2
     625    lxml: 4.6.3
     626    lz4: 3.1.3
     627    MarkupSafe: 2.0.1
     628    matplotlib: 3.4.3
     629    matplotlib-inline: 0.1.3
     630    msgpack: 1.0.2
     631    netCDF4: 1.5.7
     632    networkx: 2.6.3
     633    numexpr: 2.8.0
     634    numpy: 1.21.2
     635    openvr: 1.16.801
     636    packaging: 21.0
     637    ParmEd: 3.2.0
     638    parso: 0.8.3
     639    pexpect: 4.8.0
     640    pickleshare: 0.7.5
     641    Pillow: 8.3.2
     642    pip: 21.2.4
     643    pkginfo: 1.7.1
     644    prompt-toolkit: 3.0.23
     645    psutil: 5.8.0
     646    ptyprocess: 0.7.0
     647    pycollada: 0.7.1
     648    pydicom: 2.1.2
     649    Pygments: 2.10.0
     650    PyOpenGL: 3.1.5
     651    PyOpenGL-accelerate: 3.1.5
     652    pyparsing: 3.0.6
     653    PyQt5-commercial: 5.15.2
     654    PyQt5-sip: 12.8.1
     655    PyQtWebEngine-commercial: 5.15.2
     656    python-dateutil: 2.8.2
     657    pytz: 2021.3
     658    pyzmq: 22.3.0
     659    qtconsole: 5.1.1
     660    QtPy: 1.11.3
     661    RandomWords: 0.3.0
     662    requests: 2.26.0
     663    scipy: 1.7.1
     664    setuptools: 57.5.0
     665    sfftk-rw: 0.7.1
     666    six: 1.16.0
     667    snowballstemmer: 2.2.0
     668    sortedcontainers: 2.4.0
     669    Sphinx: 4.2.0
     670    sphinx-autodoc-typehints: 1.12.0
     671    sphinxcontrib-applehelp: 1.0.2
     672    sphinxcontrib-blockdiag: 2.0.0
     673    sphinxcontrib-devhelp: 1.0.2
     674    sphinxcontrib-htmlhelp: 2.0.0
     675    sphinxcontrib-jsmath: 1.0.1
     676    sphinxcontrib-qthelp: 1.0.3
     677    sphinxcontrib-serializinghtml: 1.1.5
     678    suds-jurko: 0.6
     679    tifffile: 2021.4.8
     680    tinyarray: 1.2.3
     681    tornado: 6.1
     682    traitlets: 5.1.1
     683    urllib3: 1.26.7
     684    wcwidth: 0.2.5
     685    webcolors: 1.11.1
     686    wheel: 0.37.0
     687    wheel-filename: 1.3.0
     688
     689}}}