Opened 4 years ago

Last modified 4 years ago

#6290 closed defect

Crash in context.makeCurrent() — at Version 1

Reported by: chimerax-bug-report@… Owned by: Tom Goddard
Priority: normal Milestone:
Component: Graphics Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description (last modified by Eric Pettersen) 

The following bug report has been submitted:
Platform:        Windows-10-10.0.19043
ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Windows fatal exception: code 0x8001010e

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program FileWindows fatal exception: code 0xs\8001010e

ChWindows fatal exception: icode 0xm8001010ee

rWindows fatal exception: acode 0xX8001010e 

1Windows fatal exception: .code 0x38001010e\

bWindows fatal exception: icode 0xn8001010e

\Windows fatal exception: lcode 0xi8001010eb

\sWindows fatal exception: code 0x8001010eit

eWindows fatal exception: code 0x-p8001010e

acWindows fatal exception: kcode 0xa8001010eg

eWindows fatal exception: scode 0x\8001010ec

hWindows fatal exception: icode 0xm8001010ee

rax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "Windows fatal exception: Ccode 0x:8001010e\

PrWindows fatal exception: ocode 0xg8001010er

aWindows fatal exception: mcode 0x 8001010eF

iWindows fatal exception: lcode 0xe8001010es

\Windows fatal exception: Ccode 0xh8001010ei

mWindows fatal exception: ecode 0xr8001010eaX

 1Windows fatal exception: .code 0x38001010e\

bWindows fatal exception: icode 0xn8001010e\

liWindows fatal exception: bcode 0x\8001010es

itWindows fatal exception: ecode 0x-8001010ep

acWindows fatal exception: kcode 0xa8001010eg

es\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00001350 (most recent call first):
  File "C:\ProWindows fatal exception: gcode 0xr8001010ea

m Windows fatal exception: Fcode 0xi8001010el

eWindows fatal exception: scode 0x\8001010eC

hWindows fatal exception: icode 0xm8001010ee

rWindows fatal exception: acode 0xX8001010e 

1Windows fatal exception: .code 0x38001010e\

bWindows fatal exception: icode 0xn8001010e\

lWindows fatal exception: icode 0xb8001010e\

sWindows fatal exception: icode 0xte8001010e-

pWindows fatal exception: acode 0xc8001010ek

aWindows fatal exception: gcode 0xe8001010es

\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\PWindows fatal exception: rcode 0xo8001010eg

ramWindows fatal exception:  Fcode 0x8001010ei

lesWindows fatal exception: \code 0xC8001010ehi

meWindows fatal exception: rcode 0xa8001010eX

 1Windows fatal exception: .code 0x38001010e\

biWindows fatal exception: ncode 0x\l8001010ei

b\Windows fatal exception: scode 0xi8001010et

eWindows fatal exception: -code 0xp8001010ea

cWindows fatal exception: kcode 0xa8001010eg

eWindows fatal exception: scode 0x\8001010ec

hWindows fatal exception: icode 0xm8001010ee

rax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_Windows fatal exception: fcode 0xi8001010el

e_Windows fatal exception: dcode 0xi8001010ea

lWindows fatal exception: ocode 0xg8001010e


  File Windows fatal exception: "code 0xC8001010e:

\Windows fatal exception: Pcode 0xr8001010eo

gWindows fatal exception: rcode 0xa8001010em

 Windows fatal exception: Fcode 0xi8001010el

eWindows fatal exception: scode 0x\8001010eC

hWindows fatal exception: icode 0xm8001010ee

rWindows fatal exception: acode 0xX8001010e 

1Windows fatal exception: .code 0x38001010e\

bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packWindows fatal exception: acode 0xg8001010ee

s\Windows fatal exception: Ccode 0xh8001010ei

mWindows fatal exception: ecode 0xr8001010ea

XWindows fatal exception: _code 0xm8001010ea

iWindows fatal exception: ncode 0x.8001010ep

yWindows fatal exception: "code 0x, line 8001010e867

 in Windows fatal exception: icode 0xn8001010ei

tWindows fatal exception: 
code 0x  File 8001010e"

CWindows fatal exception: :code 0x\8001010eP

rWindows fatal exception: ocode 0xg8001010er

aWindows fatal exception: mcode 0x 8001010eF

iles\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in shoWindows fatal exception: wcode 0x_8001010eo

penWindows fatal exception: _code 0xf8001010ei

leWindows fatal exception: _code 0xd8001010ei

alWindows fatal exception: ocode 0xg8001010e


  File "Windows fatal exception: Ccode 0x:8001010e\

PrWindows fatal exception: code 0xo8001010egr

amWindows fatal exception:  code 0xF8001010ei

leWindows fatal exception: scode 0x\8001010eC

hiWindows fatal exception: mcode 0xe8001010er

aX Windows fatal exception: 1code 0x.38001010e\

biWindows fatal exception: ncode 0x\8001010el

ib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeWindows fatal exception: rcode 0xa8001010eX

 1Windows fatal exception: .code 0x38001010e\

biWindows fatal exception: ncode 0x\8001010el

iWindows fatal exception: bcode 0x\8001010es

itWindows fatal exception: ecode 0x-8001010ep

acWindows fatal exception: kcode 0xa8001010eg

esWindows fatal exception: \code 0xC8001010eh

imWindows fatal exception: ecode 0xra8001010eX_

maWindows fatal exception: icode 0xn8001010e.

pyWindows fatal exception: "code 0x, line 8001010e1018

 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.pyWindows fatal exception: "code 0x, line 8001010e197

 in _Windows fatal exception: rcode 0xu8001010en

_mWindows fatal exception: ocode 0xd8001010eu

leWindows fatal exception: _acode 0xs8001010e_

maWindows fatal exception: icode 0xn8001010e


Windows fatal exception: Thread 0xcode 0x000013508001010e (most recent call first):


  File "Windows fatal exception: Ccode 0x:8001010e\

PWindows fatal exception: rcode 0xo8001010eg

rWindows fatal exception: acode 0xm8001010e 

FWindows fatal exception: icode 0xl8001010ee

sWindows fatal exception: code 0x\8001010eC

himeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packWindows fatal exception: acode 0xg8001010ee

s\cWindows fatal exception: hcode 0xi8001010em

eWindows fatal exception: rcode 0xa8001010ex

\Windows fatal exception: ocode 0xp8001010ee

nWindows fatal exception: _code 0xc8001010eo

mWindows fatal exception: mcode 0xa8001010en

dWindows fatal exception: \code 0xd8001010ei

aWindows fatal exception: lcode 0xo8001010eg

.Windows fatal exception: pcode 0xy8001010e"

, line Windows fatal exception: 107code 0x in 8001010e
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _runWindows fatal exception: _code 0xc8001010eo

de
  File "Windows fatal exception: Ccode 0x:8001010e\

PWindows fatal exception: rcode 0xo8001010eg

rWindows fatal exception: acode 0xm8001010e 

FWindows fatal exception: icode 0xl8001010ee

sWindows fatal exception: \code 0xC8001010eh

iWindows fatal exception: mcode 0xe8001010er

aWindows fatal exception: Xcode 0x 8001010e1

.Windows fatal exception: 3code 0x\8001010eb

inWindows fatal exception: \code 0xl8001010ei

bWindows fatal exception: \code 0xr8001010eu

npy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Windows fatal exception: Thread 0xcode 0x000013508001010e (most recent call first):


  File "Windows fatal exception: Ccode 0x:8001010e\

PrWindows fatal exception: ocode 0xg8001010er

am Windows fatal exception: Fcode 0xi8001010el

esWindows fatal exception: \code 0xC8001010eh

imWindows fatal exception: ercode 0xa8001010eX

 1Windows fatal exception: .code 0x38001010e\

biWindows fatal exception: ncode 0x\8001010el

iWindows fatal exception: bcode 0x\8001010es

itWindows fatal exception: ecode 0x-8001010ep

aWindows fatal exception: ccode 0xk8001010ea

ges\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChWindows fatal exception: icode 0xm8001010eer

aXWindows fatal exception: _code 0xm8001010ea

iWindows fatal exception: ncode 0x.8001010ep

yWindows fatal exception: "code 0x, line 8001010e1018

 in Windows fatal exception: Windows fatal exception: 
code 0x  File 8001010e"

CWindows fatal exception: :code 0x\8001010eP

rWindows fatal exception: ocode 0xg8001010er

aWindows fatal exception: mcode 0x 8001010eF

iWindows fatal exception: lcode 0xe8001010es

\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _ruWindows fatal exception: code 0xn8001010e_

codWindows fatal exception: ecode 0x
8001010e  File 

"CWindows fatal exception: :code 0x\8001010eP

roWindows fatal exception: gcode 0xr8001010ea

m Windows fatal exception: Fcode 0xi8001010el

esWindows fatal exception: \code 0xC8001010eh

imWindows fatal exception: ecode 0xr8001010ea

X Windows fatal exception: 1code 0x.8001010e3

\Windows fatal exception: bcode 0xi8001010en

\Windows fatal exception: lcode 0xi8001010eb

\Windows fatal exception: rcode 0xu8001010en

py.py", line Windows fatal exception: 197code 0x in 8001010e_

runWindows fatal exception: _code 0xm8001010eo

duWindows fatal exception: lcode 0xe8001010e_

aWindows fatal exception: scode 0x_8001010em

aiWindows fatal exception: ncode 0x
8001010e

Windows fatal exception: Thread 0xcode 0x000013508001010e (most recent call first):


  File Windows fatal exception: "code 0x8001010eC

:\PWindows fatal exception: rcode 0xo8001010eg

rWindows fatal exception: acode 0xm8001010e 

FWindows fatal exception: icode 0xl8001010ee

s\ChimeraX 1.3\bin\lib\siWindows fatal exception: tcode 0xe8001010e-

pWindows fatal exception: acode 0xc8001010ek

aWindows fatal exception: gcode 0xe8001010es

\Windows fatal exception: ccode 0xh8001010ei

mWindows fatal exception: ecode 0xr8001010ea

xWindows fatal exception: \code 0xo8001010ep

eWindows fatal exception: ncode 0x_8001010ec

oWindows fatal exception: mcode 0xm8001010ea

nWindows fatal exception: dcode 0x\8001010ed

iWindows fatal exception: acode 0xl8001010eo

gWindows fatal exception: .code 0xp8001010ey

", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraWindows fatal exception: Xcode 0x 8001010e1

.3Windows fatal exception: \code 0xb8001010ei

nWindows fatal exception: \code 0xl8001010ei

bWindows fatal exception: \code 0xs8001010ei

tWindows fatal exception: ecode 0x-8001010ep

aWindows fatal exception: ccode 0xk8001010ea

gWindows fatal exception: ecode 0xs8001010e\

cWindows fatal exception: hicode 0xm8001010ee

raWindows fatal exception: xcode 0x\8001010eo

pWindows fatal exception: ecode 0xn8001010e_

cWindows fatal exception: ocode 0xm8001010em

and\dialog.py", line Windows fatal exception: 107code 0x in 8001010eWindows fatal exception: code 0x
8001010e  File 

"Windows fatal exception: Ccode 0x:8001010e\

PrWindows fatal exception: ocode 0xg8001010er

aWindows fatal exception: mcode 0x 8001010eF

ilWindows fatal exception: ecode 0xs8001010e\

CWindows fatal exception: hcode 0xi8001010em

eWindows fatal exception: rcode 0xa8001010eX

 1Windows fatal exception: code 0x.8001010e3

\bWindows fatal exception: icode 0xn8001010e\

lib\site-packages\chimerax\ui\gui.py", line 301Windows fatal exception:  in code 0xe8001010ev

enWindows fatal exception: tcode 0x_8001010el

oopWindows fatal exception: 
code 0x  File 8001010e"

CWindows fatal exception: :code 0x\8001010eP

rWindows fatal exception: ocode 0xg8001010er

aWindows fatal exception: mcode 0x 8001010eF

iWindows fatal exception: lcode 0xe8001010e

sWindows fatal exception: \code 0xC8001010eh

iWindows fatal exception: mcode 0xe8001010er

aWindows fatal exception: Xcode 0x 8001010e1

.Windows fatal exception: code 0x38001010e\

bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\PrWindows fatal exception: code 0xo8001010eg

ramWindows fatal exception:  code 0xF8001010ei

lWindows fatal exception: Windows fatal exception: code 0xcode 0xe8001010es

8001010e\

ChWindows fatal exception: icode 0xWindows fatal exception: 8001010ecode 0xm

8001010ee

rWindows fatal exception: Windows fatal exception: code 0xcode 0xa8001010eX

 8001010e1

.Windows fatal exception: 3Windows fatal exception: code 0x\code 0x8001010e8001010e

b

iWindows fatal exception: Windows fatal exception: code 0xcode 0x8001010en8001010e

\

lWindows fatal exception: Windows fatal exception: icode 0xb8001010e\

scode 0xiWindows fatal exception: tcode 0x8001010e8001010e

e

-Windows fatal exception: Windows fatal exception: pcode 0xacode 0xc8001010e8001010ek

a

Windows fatal exception: gcode 0xe8001010eWindows fatal exception: scode 0x\8001010e



Windows fatal exception: cWindows fatal exception: hcode 0xcode 0xi8001010e8001010e



mWindows fatal exception: ecode 0xr8001010ea

x\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"Windows fatal exception: , line code 0x10188001010e in 

8001010e


  File Windows fatal exception: "code 0xC8001010e:

\Windows fatal exception: Pcode 0xr8001010e

oWindows fatal exception: gcode 0xr8001010ea

mWindows fatal exception:  code 0xF8001010ei

lWindows fatal exception: ecode 0xs8001010e\

CWindows fatal exception: hcode 0xi8001010em

eWindows fatal exception: rcode 0xa8001010eX

 Windows fatal exception: 1code 0x.8001010e3

\bin\libWindows fatal exception: \code 0xr8001010eu

npWindows fatal exception: ycode 0x.8001010ep

yWindows fatal exception: "code 0x, line 8001010e87

 in Windows fatal exception: _code 0xr8001010eu

nWindows fatal exception: _code 0xc8001010eo

dWindows fatal exception: ecode 0x
8001010e  File 

"Windows fatal exception: Ccode 0x:8001010e\

PWindows fatal exception: rcode 0xo8001010eg

raWindows fatal exception: mcode 0x 8001010eF

iWindows fatal exception: lcode 0xe8001010es

\Windows fatal exception: Ccode 0xh8001010ei

meraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "CWindows fatal exception: :code 0x\8001010eP

rogWindows fatal exception: rcode 0xa8001010em

 Windows fatal exception: Fcode 0xi8001010el

eWindows fatal exception: scode 0x\8001010eC

hiWindows fatal exception: mcode 0xe8001010eWindows fatal exception: 

rWindows fatal exception: acode 0xcode 0xX8001010e8001010e 

1Windows fatal exception: .code 0x

8001010e3

Windows fatal exception: Windows fatal exception: code 0xcode 0x\8001010eb8001010e

iWindows fatal exception: n

\code 0xlWindows fatal exception: 8001010ei

bcode 0x\8001010esWindows fatal exception: icode 0x

t8001010eWindows fatal exception: e

-Windows fatal exception: pcode 0xacode 0xc8001010ek

aWindows fatal exception: gcode 0x8001010ee

s8001010e\

[deleted a lot of this]

  File Windows fatal exception: "Ccode 0x:8001010e\

PrWindows fatal exception: ocode 0xg8001010er

aWindows fatal exception: mcode 0x 8001010eF

ilWindows fatal exception: ecode 0xs8001010e\

CWindows fatal exception: hcode 0xi8001010em

eWindows fatal exception: rcode 0xa8001010eX

 Windows fatal exception: 1code 0x.8001010e3

\Windows fatal exception: bcode 0xi8001010en

\Windows fatal exception: lWindows fatal exception: icode 0xb8001010e\code 0xs8001010e



iWindows fatal exception: tcode 0xe8001010e

-Windows fatal exception: pcode 0xa8001010ec

kWindows fatal exception: acode 0xg8001010ee

sWindows fatal exception: \code 0xC8001010eh

iWindows fatal exception: mcode 0xe8001010er

aWindows fatal exception: Xcode 0x_8001010em

aWindows fatal exception: icode 0xn8001010e.

pWindows fatal exception: ycode 0x"8001010e, line 

867Windows fatal exception:  in code 0xi8001010en

iWindows fatal exception: tcode 0x
8001010e  File 

"C:\PrWindows fatal exception: ocode 0xg8001010er

amWindows fatal exception:  code 0xF8001010ei

lWindows fatal exception: ecode 0xs8001010e\

CWindows fatal exception: hcode 0xi8001010em

eWindows fatal exception: rcode 0xa8001010eX

 Windows fatal exception: 1code 0x.8001010e3

\Windows fatal exception: bcode 0xi8001010en

\Windows fatal exception: lcode 0xi8001010eb

\Windows fatal exception: scode 0xi8001010et

eWindows fatal exception: -code 0xp8001010ea

cWindows fatal exception: kcode 0xa8001010e

ges\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000964 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000964 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000964 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000964 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000964 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000964 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000964 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000964 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000964 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000964 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000964 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threaWindows fatal exception: code 0xd8001010ei

ng.Windows fatal exception: pcode 0xy8001010e"

, line Windows fatal exception: 574code 0x in 8001010ew

aWindows fatal exception: icode 0xt8001010e


  File Windows fatal exception: "code 0xC8001010e:

\Windows fatal exception: Pcode 0xr8001010eo

gWindows fatal exception: rcode 0xa8001010em

 Windows fatal exception: Fcode 0xi8001010el

eWindows fatal exception: scode 0x\8001010eWindows fatal exception: 

code 0xWindows fatal exception: 8001010ecode 0x

8001010e

CWindows fatal exception: hcode 0xiWindows fatal exception: 8001010emcode 0xe8001010er



aXWindows fatal exception:  code 0x18001010e.

3\Windows fatal exception: bcode 0xi8001010en

\Windows fatal exception: code 0xl8001010ei

bWindows fatal exception: \code 0xt8001010eh

rWindows fatal exception: ecode 0xa8001010ed

iWindows fatal exception: ncode 0xg8001010e.

pWindows fatal exception: ycode 0x"8001010e, line 

1284Windows fatal exception:  in code 0xr8001010eu

nWindows fatal exception: 
code 0x  File 8001010e"

C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000964 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000964 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000964 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000964 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000964 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000964 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in runWindows fatal exception: 
code 0x  File 8001010e"

C:Windows fatal exception: \code 0xP8001010er

oWindows fatal exception: gcode 0xr8001010ea

mWindows fatal exception:  code 0xF8001010ei

leWindows fatal exception: scode 0x\8001010eC

hWindows fatal exception: imcode 0xe8001010er

aWindows fatal exception: Xcode 0x 8001010e1

.Windows fatal exception: 3code 0x\8001010eb

iWindows fatal exception: ncode 0x\8001010el

iWindows fatal exception: bcode 0x\8001010et

hWindows fatal exception: rcode 0xe8001010e

ading.py", line 973 in Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e_bootstrap

_inWindows fatal exception: ncode 0x8001010e

Windows fatal exception: code 0x8001010ee

rWindows fatal exception: 
code 0x  File 8001010e"

CWindows fatal exception: :code 0x\8001010eP

rWindows fatal exception: ocode 0xg8001010er

aWindows fatal exception: mWindows fatal exception:  code 0xFcode 0xi8001010el

8001010eeWindows fatal exception: scode 0x

\C8001010eWindows fatal exception: h

code 0xiWindows fatal exception: mcode 0x8001010ee

rWindows fatal exception: acode 0xX 8001010e1

.3Windows fatal exception: \8001010eb

incode 0x\8001010el

ibWindows fatal exception: \code 0xt8001010eh

rWindows fatal exception: ecode 0xa8001010ed

iWindows fatal exception: ncode 0xg8001010e.

pWindows fatal exception: ycode 0x"8001010e, line 

930Windows fatal exception:  in code 0x_8001010eb

oWindows fatal exception: ocode 0xt8001010es

tWindows fatal exception: rcode 0xa8001010ep


Windows fatal exception: 
code 0xThread 0x8001010e00001350

 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000964 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000964 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000964 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000964 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: access violation

Current thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\graphics\opengl.py", line 111 in make_current
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\graphics\opengl.py", line 490 in make_current
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\graphics\view.py", line 104 in _use_opengl
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\graphics\view.py", line 139 in draw
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\updateloop.py", line 73 in draw_new_frame
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\updateloop.py", line 158 in update_graphics_now
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\graphics.py", line 145 in resizeEvent
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\graphics.py", line 57 in event
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
===== Log before crash start =====
> ui tool show "Color Actions"

> open "E:\Dropbox\PhD\Research\4 Manuscripts\CFTR Domain
> Assembly\Data\Structural\5uak\5UAK.pdb" format pdb

5UAK.pdb title:  
Dephosphorylated, atp-free human cystic fibrosis transmembrane conductance
regulator (CFTR) [more info...]  
  
Chain information for 5UAK.pdb #1  
---  
Chain | Description | UniProt  
A | cystic fibrosis transmembrane conductance regulator | CFTR_HUMAN  
R | cystic fibrosis transmembrane conductance regulator |  
  

> set bgColor white

> select :1-388

3233 atoms, 3302 bonds, 403 residues, 1 model selected  

> color sel #FF8000

> select :838-1201

2445 atoms, 2506 bonds, 1 pseudobond, 304 residues, 2 models selected  

> color sel #00FF00

> select :389-673

1737 atoms, 1766 bonds, 1 pseudobond, 221 residues, 2 models selected  

> color sel #991999

> select :1202-1480

1817 atoms, 1848 bonds, 230 residues, 1 model selected  

> color sel #3380CC

> select :163, 164, 165, 167

32 atoms, 30 bonds, 4 residues, 1 model selected  

> color sel red

> select :168, 169, 171, 172, 177

35 atoms, 32 bonds, 5 residues, 1 model selected  

> color sel yellow

> select :166, 170, 173, 174, 175, 176, 178

55 atoms, 51 bonds, 7 residues, 1 model selected  

> color sel blue

> select :148-193

366 atoms, 368 bonds, 46 residues, 1 model selected  

> select ~sel

8866 atoms, 9055 bonds, 4 pseudobonds, 1112 residues, 2 models selected  

> transparency sel 90 target c

> hide sel cartoons

> save "E:/Dropbox/PhD/Research/4 Manuscripts/CFTR Domain
> Assembly/Data/Structural/20220302_5uak_ICL1_lysine_ERexit.tif" width 699
> height 566 supersample 3

> save "E:/Dropbox/PhD/Research/4 Manuscripts/CFTR Domain
> Assembly/Data/Structural/20220302_5uak_ICL1_lysine_ERexit.cxs"

> select :163, 164, 165, 166, 167, 170

52 atoms, 50 bonds, 6 residues, 1 model selected  

> color sel red

> select :168, 169, 172, 177

28 atoms, 25 bonds, 4 residues, 1 model selected  

> color sel yellow

> select :171, 173, 174, 175, 176, 178

42 atoms, 39 bonds, 6 residues, 1 model selected  

> color sel blue

> select clear

> save "E:/Dropbox/PhD/Research/4 Manuscripts/CFTR Domain
> Assembly/Data/Structural/20220302_5uak_ICL1_neg_Erexit.tif" width 699 height
> 566 supersample 3

> select :163, 164, 165, 167

32 atoms, 30 bonds, 4 residues, 1 model selected  

> color sel red

> select :168, 172, 177

22 atoms, 19 bonds, 3 residues, 1 model selected  

> color sel yellow

> select :173, 174, 175, 176, 178

35 atoms, 33 bonds, 5 residues, 1 model selected  

> color sel blue

> select :166, 169, 170, 171

33 atoms, 31 bonds, 4 residues, 1 model selected  

> color sel cyan

> select clear

> save "E:/Dropbox/PhD/Research/4 Manuscripts/CFTR Domain
> Assembly/Data/Structural/20220302_5uak_ICL1_lysine_neg_ERexit.tif" width 699
> height 566 supersample 3

> cartoon style coil xsection oval

> cartoon style xsection barbell modeHelix default

> cartoon style xsection oval modeHelix default

> cartoon style xsection rectangle modeHelix default

> cartoon style modeHelix tube sides 20

> cartoon style xsection oval modeHelix default

> hide (protein|nucleic) target a

> cartoon hide

> show backbone target ab

> hide (protein|nucleic) target a

> cartoon hide

> show ((protein&@ca)|(nucleic&@p)) target ab

> style ringFill thin

Changed 1158 residue ring styles  

> hide atoms

> show cartoons

> hide cartoons

> hide atoms

> show atoms

> hide (protein|nucleic) target a

> cartoon hide

> show backbone target ab

> hide (protein|nucleic) target a

> cartoon hide

> show ((protein&@ca)|(nucleic&@p)) target ab

> hide atoms

> show cartoons

> preset cartoons/nucleotides licorice/ovals

Changed 0 atom styles  
Preset expands to these ChimeraX commands:

    
    
    show nucleic
    hide protein|solvent|H
    surf hide
    style (protein|nucleic|solvent) & @@draw_mode=0 stick
    cartoon
    cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20
    cartoon style ~(nucleic|strand) x round
    cartoon style (nucleic|strand) x rect
    cartoon style protein modeh default arrows f x round width 1 thick 1
    cartoon style nucleic x round width 1.6 thick 1.6
    nucleotides tube/slab shape ellipsoid

  

> close session

> open "E:\Dropbox\PhD\Research\4 Manuscripts\CFTR Domain
> Assembly\Data\Structural\5uak\5UAK.pdb" format pdb

5UAK.pdb title:  
Dephosphorylated, atp-free human cystic fibrosis transmembrane conductance
regulator (CFTR) [more info...]  
  
Chain information for 5UAK.pdb #1  
---  
Chain | Description | UniProt  
A | cystic fibrosis transmembrane conductance regulator | CFTR_HUMAN  
R | cystic fibrosis transmembrane conductance regulator |  
  

> select :140-190

401 atoms, 406 bonds, 51 residues, 1 model selected  

> set bgColor white

> select ~sel

8831 atoms, 9017 bonds, 4 pseudobonds, 1107 residues, 2 models selected  

> select hid

Expected an objects specifier or a keyword  

> select hide c

Expected an objects specifier or a keyword  

> hide se c

Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword  

> hide sel cartoons

> preset cartoons/nucleotides licorice/ovals

Changed 0 atom styles  
Preset expands to these ChimeraX commands:

    
    
    show nucleic
    hide protein|solvent|H
    surf hide
    style (protein|nucleic|solvent) & @@draw_mode=0 stick
    cartoon
    cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20
    cartoon style ~(nucleic|strand) x round
    cartoon style (nucleic|strand) x rect
    cartoon style protein modeh default arrows f x round width 1 thick 1
    cartoon style nucleic x round width 1.6 thick 1.6
    nucleotides tube/slab shape ellipsoid

  

> select :140-200

480 atoms, 488 bonds, 61 residues, 1 model selected  

> hide sel cartoons

> select ~sel

8752 atoms, 8935 bonds, 4 pseudobonds, 1097 residues, 2 models selected  

> hide sel cartoons

> color (#!1 & sel) light gray

> ui tool show "Color Actions"

> color sel light gray target c

> color sel gray target c

> color sel dark gray target a

> color sel gray target s

> select ~sel

480 atoms, 488 bonds, 61 residues, 1 model selected  

> color sel light gray target c

> color sel gray target c

> color sel dim gray target c

> color sel dark gray target c

> color sel black target c

> color sel dark gray target c

> select :179-200

172 atoms, 174 bonds, 22 residues, 1 model selected  

> transparency sel 90 target c

> undo

> color sel dark gray

> show border

Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword  

> open "E:/Dropbox/PhD/Research/4 Manuscripts/CFTR Domain
> Assembly/Data/Structural/20220302_5uak_ICL1_lysine_ERexit.cxs"

opened ChimeraX session  

> select :all

Nothing selected  

> select :1-1480

9232 atoms, 9423 bonds, 4 pseudobonds, 1158 residues, 2 models selected  

> show sel atoms

> hide sel atoms

> show sel cartoons

> select :358-395

319 atoms, 324 bonds, 38 residues, 1 model selected  

> transparency target 0 sel c

Missing or invalid "percent" argument: Expected a number  

> transparency sel target 0 c

Missing or invalid "percent" argument: Expected a number  

> transparency sel 0 target c

> open "E:/Dropbox/PhD/Research/4 Manuscripts/CFTR Domain
> Assembly/Data/Structural/5uak/20220227_pseudobonds_contacts.pb"

Opened Pseudobonds 20220227_pseudobonds_contacts.pb, 42 bonds  

> undo

> save "E:/Dropbox/PhD/Research/4 Manuscripts/CFTR Domain
> Assembly/Data/Structural/5uak/20220302_5uak_ICL1_TMD1-NBD1.cxs"

> select :1-100

906 atoms, 926 bonds, 115 residues, 1 model selected  

> transparency sel 100 target c

> transparency sel 90 target c

> transparency sel 95 target c

> transparency sel 100 target c

> select: 163, 168, 375, 377, 378

Unknown command: select: 163, 168, 375, 377, 378  

> show sel atoms

> select :163, 168, 375, 377, 378

41 atoms, 37 bonds, 5 pseudobonds, 5 residues, 2 models selected  

> show sel atoms

> open "E:/Dropbox/PhD/Research/4 Manuscripts/CFTR Domain
> Assembly/Data/Structural/5uak/20220227_ChimeraX_5UAK_H-bonds.txt"

Unrecognized file suffix '.txt'  

> open "E:/Dropbox/PhD/Research/4 Manuscripts/CFTR Domain
> Assembly/Data/Structural/5uak/20220227_pseudobonds_H.pb"

Opened Pseudobonds 20220227_pseudobonds_H.pb, 5 bonds  

> select clear

> select :163, 168, 375, 377, 378, 379

50 atoms, 46 bonds, 9 pseudobonds, 6 residues, 3 models selected  

> show sel atoms

> select clear

> select :163, 166, 168, 375, 377, 378, 379

59 atoms, 54 bonds, 11 pseudobonds, 7 residues, 3 models selected  

> show sel atoms

> select :166

9 atoms, 8 bonds, 1 residue, 1 model selected  

> hide sel atoms

> select :377

9 atoms, 8 bonds, 1 residue, 1 model selected  

> hide sel atoms

> ui tool show Contacts

> contacts sel resSeparation 5 log true
    
    
    Allowed overlap: -0.4
    H-bond overlap reduction: 0.4
    Ignore contacts between atoms separated by 4 bonds or less
    Ignore contacts between atoms in residues less than 5 apart in sequence
    Detect intra-residue contacts: False
    Detect intra-molecule contacts: True
    
    0 contacts
    atom1  atom2  overlap  distance
    

  
No contacts  

> select :379

9 atoms, 8 bonds, 1 residue, 1 model selected  

> ui tool show Contacts

> contacts sel resSeparation 5 log true
    
    
    Allowed overlap: -0.4
    H-bond overlap reduction: 0.4
    Ignore contacts between atoms separated by 4 bonds or less
    Ignore contacts between atoms in residues less than 5 apart in sequence
    Detect intra-residue contacts: False
    Detect intra-molecule contacts: True
    
    2 contacts
        atom1         atom2      overlap  distance
    /A GLU 379 CB  /A LYS 166 O   0.148    3.152
    /A GLU 379 CA  /A LYS 166 O   -0.059    3.359
    

  
2 contacts  

> view sel

> undo

> select :163, 166, 168, 375, 377

41 atoms, 36 bonds, 4 pseudobonds, 5 residues, 3 models selected  

> view sel

> save "E:/Dropbox/PhD/Research/4 Manuscripts/CFTR Domain
> Assembly/Data/Structural/5uak/20220302_5uak_ICL1_TMD1-NBD1.cxs"

> cofr sel

> ui tool show "Side View"

> save "E:/Dropbox/PhD/Research/4 Manuscripts/CFTR Domain
> Assembly/Data/Structural/5uak/20220302_5uak_ICL1_TMD1-NBD1.cxs"

> save "E:/Dropbox/PhD/Research/4 Manuscripts/CFTR Domain
> Assembly/Data/Structural/5uak/20220302_5uak_ICL1_TMD1-NBD1.tif" width 701
> height 572 supersample 3

> select clear

> save "E:/Dropbox/PhD/Research/4 Manuscripts/CFTR Domain
> Assembly/Data/Structural/5uak/20220302_5uak_ICL1_TMD1-NBD1.tif" width 701
> height 572 supersample 3

> close session

> open "E:\Dropbox\PhD\Research\4 Manuscripts\CFTR Domain
> Assembly\Data\Structural\20220302_5uak_ICL1_lysine_ERexit.cxs" format
> session

opened ChimeraX session  

> view

> hide sel cartoons

> show sel cartoons

> select :1040-1090

427 atoms, 441 bonds, 51 residues, 1 model selected  

> transparency sel 0 target c

> select :165, 166, 167, 172, 177, 1065, 1075, 1071, 1066, 1062, 1059

94 atoms, 86 bonds, 11 residues, 1 model selected  

> show sel atoms

> open "E:/Dropbox/PhD/Research/4 Manuscripts/CFTR Domain
> Assembly/Data/Structural/5uak/20220227_pseudobonds_contacts.pb"

Opened Pseudobonds 20220227_pseudobonds_contacts.pb, 42 bonds  

> open "E:/Dropbox/PhD/Research/4 Manuscripts/CFTR Domain
> Assembly/Data/Structural/5uak/20220227_pseudobonds_H.pb"

Opened Pseudobonds 20220227_pseudobonds_H.pb, 5 bonds  

> view sel

> open "E:/Dropbox/PhD/Research/4 Manuscripts/CFTR Domain
> Assembly/Data/Structural/5uak/20220302_5uak_ICL1_ICL4_contacts.pb"

Opened Pseudobonds 20220302_5uak_ICL1_ICL4_contacts.pb, 40 bonds  

> save "E:/Dropbox/PhD/Research/4 Manuscripts/CFTR Domain
> Assembly/Data/Structural/5uak/20220302_5uak_ICL1_ICL4.cxs"

> close session

> open "E:\Dropbox\PhD\Research\4 Manuscripts\CFTR Domain
> Assembly\Data\Structural\5uak\20220302_5uak_ICL1_ICL4.cxs" format session

opened ChimeraX session  

> close #2

> close #3

> open "E:/Dropbox/PhD/Research/4 Manuscripts/CFTR Domain
> Assembly/Data/Structural/5uak/20220302_5uak_ICL1_ICL4_H-bonds.pb"

Opened Pseudobonds 20220302_5uak_ICL1_ICL4_H-bonds.pb, 3 bonds  

> save "E:/Dropbox/PhD/Research/4 Manuscripts/CFTR Domain
> Assembly/Data/Structural/5uak/20220302_5uak_ICL1_ICL4.cxs"

> select clear

> save "E:/Dropbox/PhD/Research/4 Manuscripts/CFTR Domain
> Assembly/Data/Structural/5uak/20220302_5uak_ICL1_ICL4.tif" width 701 height
> 572 supersample 3

> close session

> open "E:\Dropbox\PhD\Research\4 Manuscripts\CFTR Domain
> Assembly\Data\Structural\20220302_5uak_ICL1_lysine_ERexit.cxs" format
> session

opened ChimeraX session  

> hide sel cartoons

> show sel cartoons

> select :173, 169

14 atoms, 12 bonds, 2 residues, 1 model selected  

> select :169, 173, 474, 401

37 atoms, 35 bonds, 4 residues, 1 model selected  

> show select atoms

Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword  

> show sel atoms

> view sel

> select :399-401, 463-476

133 atoms, 134 bonds, 17 residues, 1 model selected  

> transparency sel 0 target c

> select :402

9 atoms, 8 bonds, 1 residue, 1 model selected  

> transparency sel 0 target c

> open "E:/Dropbox/PhD/Research/4 Manuscripts/CFTR Domain
> Assembly/Data/Structural/5uak/20220227_ChimeraX_5UAK_contacts.txt"

Unrecognized file suffix '.txt'  

> open "E:/Dropbox/PhD/Research/4 Manuscripts/CFTR Domain
> Assembly/Data/Structural/5uak/20220227_pseudobonds_contacts.pb"

Opened Pseudobonds 20220227_pseudobonds_contacts.pb, 42 bonds  

> close #2

> open "E:/Dropbox/PhD/Research/4 Manuscripts/CFTR Domain
> Assembly/Data/Structural/5uak/20220302_5uak_ICL1_ICL4_contacts.pb"

Opened Pseudobonds 20220302_5uak_ICL1_ICL4_contacts.pb, 40 bonds  

> select :389-673

1737 atoms, 1766 bonds, 1 pseudobond, 221 residues, 2 models selected  

> transparency sel 0 target c

> select clear

> save "E:/Dropbox/PhD/Research/4 Manuscripts/CFTR Domain
> Assembly/Data/Structural/5uak/20220302_5uak_ICL1_NBD1.cxs"

> save "E:/Dropbox/PhD/Research/4 Manuscripts/CFTR Domain
> Assembly/Data/Structural/5uak/20220302_5uak_ICL1_NBD1.tif" width 701 height
> 572 supersample 3


===== Log before crash end =====

Log:
UCSF ChimeraX version: 1.3 (2021-12-08)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 3.3.0 - Build 27.20.100.8853
OpenGL renderer: Intel(R) Iris(R) Xe Graphics
OpenGL vendor: Intel
Manufacturer: LG Electronics
Model: 16ZD90P-GX7TK
OS: Microsoft Windows 10 Home (Build 19043)
Memory: 16,890,650,624
MaxProcessMemory: 137,438,953,344
CPU: 8 11th Gen Intel(R) Core(TM) i7-1165G7 @ 2.80GHz
OSLanguage: ko-KR
Locale: ('ko_KR', 'cp949')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.9.1
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2021.10.8
    cftime: 1.5.1.1
    charset-normalizer: 2.0.9
    ChimeraX-AddCharge: 1.2.2
    ChimeraX-AddH: 2.1.11
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.2.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.31
    ChimeraX-AtomicLibrary: 4.2
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AtomSearchLibrary: 1.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.0
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.6.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.2
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5
    ChimeraX-CommandLine: 1.1.5
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.3
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1.5
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1.2
    ChimeraX-Help: 1.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.4
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 2.0.4
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.4
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.2.6
    ChimeraX-ModelPanel: 1.2.1
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.7
    ChimeraX-PDB: 2.6.5
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.4.6
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.6.1
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1
    ChimeraX-ToolshedUtils: 1.2
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.13.7
    ChimeraX-uniprot: 2.2
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.0.1
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    comtypes: 1.1.10
    cxservices: 1.1
    cycler: 0.11.0
    Cython: 0.29.24
    decorator: 5.1.0
    docutils: 0.17.1
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 3.6.0
    html2text: 2020.1.16
    idna: 3.3
    ihm: 0.21
    imagecodecs: 2021.4.28
    imagesize: 1.3.0
    ipykernel: 5.5.5
    ipython: 7.23.1
    ipython-genutils: 0.2.0
    jedi: 0.18.0
    Jinja2: 3.0.1
    jupyter-client: 6.1.12
    jupyter-core: 4.9.1
    kiwisolver: 1.3.2
    lxml: 4.6.3
    lz4: 3.1.3
    MarkupSafe: 2.0.1
    matplotlib: 3.4.3
    matplotlib-inline: 0.1.3
    msgpack: 1.0.2
    netCDF4: 1.5.7
    networkx: 2.6.3
    numexpr: 2.8.0
    numpy: 1.21.2
    openvr: 1.16.801
    packaging: 21.3
    ParmEd: 3.2.0
    parso: 0.8.3
    pickleshare: 0.7.5
    Pillow: 8.3.2
    pip: 21.2.4
    pkginfo: 1.7.1
    prompt-toolkit: 3.0.23
    psutil: 5.8.0
    pycollada: 0.7.1
    pydicom: 2.1.2
    Pygments: 2.10.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.6
    PyQt5-commercial: 5.15.2
    PyQt5-sip: 12.8.1
    PyQtWebEngine-commercial: 5.15.2
    python-dateutil: 2.8.2
    pytz: 2021.3
    pywin32: 228
    pyzmq: 22.3.0
    qtconsole: 5.1.1
    QtPy: 1.11.3
    RandomWords: 0.3.0
    requests: 2.26.0
    scipy: 1.7.1
    setuptools: 57.5.0
    sfftk-rw: 0.7.1
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 4.2.0
    sphinx-autodoc-typehints: 1.12.0
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2021.4.8
    tinyarray: 1.2.3
    tornado: 6.1
    traitlets: 5.1.1
    urllib3: 1.26.7
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.0
    wheel-filename: 1.3.0
    WMI: 1.5.1

Change History (1)

comment:1 by Eric Pettersen, 4 years ago

Component: Unassigned → Graphics
Description: modified (diff)
Owner: set to Tom Goddard
Platform: → all
Project: → ChimeraX
Status: new → assigned
Summary: ChimeraX bug report submission → Crash in context.makeCurrent()

Possibly while saving image

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