id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 6732 Crash in Ring.aromatic lp212@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: macOS-10.15.7-x86_64-i386-64bit ChimeraX Version: 1.4.dev202112082248 (2021-12-08 22:48:38 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Crashed when attempting to open a .cxs file. Fatal Python error: Segmentation fault Thread 0x00007000137a1000 (most recent call first): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 316 in wait File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 574 in wait File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 1284 in run File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 973 in _bootstrap_inner File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 930 in _bootstrap Current thread 0x000000011e71ddc0 (most recent call first): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/atomic/molc.py"", line 95 in get_prop File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/atomic/molobject.py"", line 676 in __init__ File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/atomic/molobject.py"", line 2241 in File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/atomic/molarray.py"", line 151 in File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/atomic/molarray.py"", line 151 in __iter__ File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/atomic/structure.py"", line 541 in _create_ring_graphics File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/atomic/structure.py"", line 351 in update_graphics_if_needed File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/nucleotides/_data.py"", line 615 in _rebuild_molecule File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/nucleotides/_data.py"", line 522 in rebuild File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/triggerset.py"", line 134 in invoke File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/triggerset.py"", line 217 in _activate File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/triggerset.py"", line 186 in activate File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/triggerset.py"", line 354 in activate_trigger File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py"", line 54 in draw_new_frame File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py"", line 158 in update_graphics_now File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/graphics.py"", line 145 in resizeEvent File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/graphics.py"", line 57 in event File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py"", line 316 in event_loop File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py"", line 867 in init File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py"", line 1018 in File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py"", line 87 in _run_code File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py"", line 197 in _run_module_as_main Process: ChimeraX [1956] Path: /Applications/ChimeraX_Daily.app/Contents/MacOS/ChimeraX Identifier: edu.ucsf.cgl.ChimeraX Version: 1.4.0 (1.4.0.0) Code Type: X86-64 (Native) Parent Process: ??? [1] Responsible: ChimeraX [1956] User ID: 501 Date/Time: 2022-04-28 09:34:14.886 +0100 OS Version: Mac OS X 10.15.7 (19H1824) Report Version: 12 Anonymous UUID: 00793036-5073-2795-E567-3396AEE1EF13 Sleep/Wake UUID: F200B2DC-AB16-4C4E-ABC6-BC6F8123964B Time Awake Since Boot: 31000 seconds Time Since Wake: 3200 seconds System Integrity Protection: enabled Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread Exception Type: EXC_BAD_ACCESS (SIGSEGV) Exception Codes: KERN_INVALID_ADDRESS at 0x00000000000007fb Exception Note: EXC_CORPSE_NOTIFY VM Regions Near 0x7fb: --> __TEXT 000000010f1c6000-000000010f1c7000 [ 4K] r-x/r-x SM=COW /Applications/ChimeraX_Daily.app/Contents/MacOS/ChimeraX Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread 0 libsystem_kernel.dylib 0x00007fff690ca32a __pthread_kill + 10 1 libsystem_pthread.dylib 0x00007fff69186e60 pthread_kill + 430 2 libsystem_c.dylib 0x00007fff68fe193e raise + 26 3 libsystem_platform.dylib 0x00007fff6917b5fd _sigtramp + 29 4 ??? 000000000000000000 0 + 0 5 libmolc.dylib 0x0000000136de10c9 ring_aromatic + 57 6 libffi.dylib 0x00007fff66d24905 ffi_call_unix64 + 85 7 libffi.dylib 0x00007fff66d24244 ffi_call_int + 694 8 _ctypes.cpython-39-darwin.so 0x000000011dc48ead _ctypes_callproc + 1037 9 _ctypes.cpython-39-darwin.so 0x000000011dc42c36 PyCFuncPtr_call + 1206 10 org.python.python 0x000000010f20c17d _PyObject_MakeTpCall + 365 11 org.python.python 0x000000010f2e461c call_function + 876 12 org.python.python 0x000000010f2e1b4b _PyEval_EvalFrameDefault + 25371 13 org.python.python 0x000000010f2e5283 _PyEval_EvalCode + 2611 14 org.python.python 0x000000010f20c8d1 _PyFunction_Vectorcall + 289 15 org.python.python 0x000000010f2e458c call_function + 732 16 org.python.python 0x000000010f2e1ab3 _PyEval_EvalFrameDefault + 25219 17 org.python.python 0x000000010f20c948 function_code_fastcall + 104 18 org.python.python 0x000000010f20bfd5 _PyObject_FastCallDictTstate + 293 19 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0x0000000127225a86 QWidgetPrivate::setVisible(bool) + 806 119 QtWidgets.abi3.so 0x0000000126d61bbf sipQDockWidget::setVisible(bool) + 111 120 QtCore 0x0000000124c69b9f QObject::event(QEvent*) + 943 121 QtWidgets 0x0000000127226e9a QWidget::event(QEvent*) + 4698 122 QtWidgets 0x0000000127304d27 QDockWidget::event(QEvent*) + 791 123 QtWidgets.abi3.so 0x0000000126d6167f sipQDockWidget::event(QEvent*) + 191 124 QtWidgets 0x00000001271eb9ea QApplicationPrivate::notify_helper(QObject*, QEvent*) + 266 125 QtWidgets 0x00000001271ece11 QApplication::notify(QObject*, QEvent*) + 497 126 QtWidgets.abi3.so 0x0000000126d9edb9 sipQApplication::notify(QObject*, QEvent*) + 233 127 QtCore 0x0000000124c3ea34 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212 128 QtCore 0x0000000124c3fd79 QCoreApplicationPrivate::sendPostedEvents(QObject*, int, QThreadData*) + 809 129 libqcocoa.dylib 0x0000000135477259 0x13543d000 + 238169 130 libqcocoa.dylib 0x00000001354779c8 0x13543d000 + 240072 131 com.apple.CoreFoundation 0x00007fff2f49b682 __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17 132 com.apple.CoreFoundation 0x00007fff2f49b621 __CFRunLoopDoSource0 + 103 133 com.apple.CoreFoundation 0x00007fff2f49b43b __CFRunLoopDoSources0 + 209 134 com.apple.CoreFoundation 0x00007fff2f49a16a __CFRunLoopRun + 927 135 com.apple.CoreFoundation 0x00007fff2f49976e CFRunLoopRunSpecific + 462 136 com.apple.HIToolbox 0x00007fff2e0c5aad RunCurrentEventLoopInMode + 292 137 com.apple.HIToolbox 0x00007fff2e0c56e4 ReceiveNextEventCommon + 359 138 com.apple.HIToolbox 0x00007fff2e0c5569 _BlockUntilNextEventMatchingListInModeWithFilter + 64 139 com.apple.AppKit 0x00007fff2c70e659 _DPSNextEvent + 883 140 com.apple.AppKit 0x00007fff2c70cea0 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1352 141 com.apple.AppKit 0x00007fff2c6febae -[NSApplication run] + 658 142 libqcocoa.dylib 0x000000013547662f 0x13543d000 + 235055 143 QtCore 0x0000000124c3aacf QEventLoop::exec(QFlags) + 431 144 QtCore 0x0000000124c3f042 QCoreApplication::exec() + 130 145 QtWidgets.abi3.so 0x0000000126e90652 meth_QApplication_exec(_object*, _object*) + 82 146 org.python.python 0x000000010f24b06d cfunction_call + 125 147 org.python.python 0x000000010f20c17d _PyObject_MakeTpCall + 365 148 org.python.python 0x000000010f2e461c call_function + 876 149 org.python.python 0x000000010f2e1ab3 _PyEval_EvalFrameDefault + 25219 150 org.python.python 0x000000010f20c948 function_code_fastcall + 104 151 org.python.python 0x000000010f20e98a method_vectorcall + 202 152 org.python.python 0x000000010f2e458c call_function + 732 153 org.python.python 0x000000010f2e1ab3 _PyEval_EvalFrameDefault + 25219 154 org.python.python 0x000000010f2e5283 _PyEval_EvalCode + 2611 155 org.python.python 0x000000010f20c8d1 _PyFunction_Vectorcall + 289 156 org.python.python 0x000000010f2e458c call_function + 732 157 org.python.python 0x000000010f2e1b4b _PyEval_EvalFrameDefault + 25371 158 org.python.python 0x000000010f2e5283 _PyEval_EvalCode + 2611 159 org.python.python 0x000000010f2db70b PyEval_EvalCode + 139 160 org.python.python 0x000000010f2d8592 builtin_exec + 626 161 org.python.python 0x000000010f24a86a cfunction_vectorcall_FASTCALL + 218 162 org.python.python 0x000000010f2e458c call_function + 732 163 org.python.python 0x000000010f2e1b4b _PyEval_EvalFrameDefault + 25371 164 org.python.python 0x000000010f2e5283 _PyEval_EvalCode + 2611 165 org.python.python 0x000000010f20c8d1 _PyFunction_Vectorcall + 289 166 org.python.python 0x000000010f2e458c call_function + 732 167 org.python.python 0x000000010f2e1b4b _PyEval_EvalFrameDefault + 25371 168 org.python.python 0x000000010f2e5283 _PyEval_EvalCode + 2611 169 org.python.python 0x000000010f20c8d1 _PyFunction_Vectorcall + 289 170 org.python.python 0x000000010f34ae20 pymain_run_module + 208 171 org.python.python 0x000000010f34a537 Py_RunMain + 1431 172 org.python.python 0x000000010f34ab3f pymain_main + 223 173 org.python.python 0x000000010f34aa4b Py_Main + 43 174 edu.ucsf.cgl.ChimeraX 0x000000010f1c6dc8 main + 120 175 libdyld.dylib 0x00007fff68f82cc9 start + 1 Thread 1: 0 libsystem_kernel.dylib 0x00007fff690c6872 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff69187425 _pthread_cond_wait + 698 2 libopenblas.0.dylib 0x000000010feaaa9f blas_thread_server + 207 3 libsystem_pthread.dylib 0x00007fff69187109 _pthread_start + 148 4 libsystem_pthread.dylib 0x00007fff69182b8b thread_start + 15 Thread 2: 0 libsystem_kernel.dylib 0x00007fff690c6872 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff69187425 _pthread_cond_wait + 698 2 libopenblas.0.dylib 0x000000010feaaa9f blas_thread_server + 207 3 libsystem_pthread.dylib 0x00007fff69187109 _pthread_start + 148 4 libsystem_pthread.dylib 0x00007fff69182b8b thread_start + 15 Thread 3: 0 libsystem_kernel.dylib 0x00007fff690c6872 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff69187425 _pthread_cond_wait + 698 2 libopenblas.0.dylib 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libopenblas.0.dylib 0x000000010feaaa9f blas_thread_server + 207 3 libsystem_pthread.dylib 0x00007fff69187109 _pthread_start + 148 4 libsystem_pthread.dylib 0x00007fff69182b8b thread_start + 15 Thread 7: 0 libsystem_kernel.dylib 0x00007fff690c6872 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff69187425 _pthread_cond_wait + 698 2 libopenblas.0.dylib 0x000000010feaaa9f blas_thread_server + 207 3 libsystem_pthread.dylib 0x00007fff69187109 _pthread_start + 148 4 libsystem_pthread.dylib 0x00007fff69182b8b thread_start + 15 Thread 8:: ThreadPoolServiceThread 0 libsystem_kernel.dylib 0x00007fff690ccb86 kevent64 + 10 1 QtWebEngineCore 0x000000012acfce6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330 2 QtWebEngineCore 0x000000012acfccc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167 3 QtWebEngineCore 0x000000012ac8562b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 4 QtWebEngineCore 0x000000012ac497cb base::RunLoop::Run() + 395 5 QtWebEngineCore 0x000000012ac90a94 base::internal::ServiceThread::Run(base::RunLoop*) + 20 6 QtWebEngineCore 0x000000012aca4a7d base::Thread::ThreadMain() + 413 7 QtWebEngineCore 0x000000012acede07 base::(anonymous namespace)::ThreadFunc(void*) + 87 8 libsystem_pthread.dylib 0x00007fff69187109 _pthread_start + 148 9 libsystem_pthread.dylib 0x00007fff69182b8b thread_start + 15 Thread 9:: ThreadPoolBackgroundWorker 0 libsystem_kernel.dylib 0x00007fff690c3dea mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff690c4160 mach_msg + 60 2 QtWebEngineCore 0x000000012acf2492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x000000012ac9a778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56 4 QtWebEngineCore 0x000000012ac9b150 base::internal::WorkerThread::RunWorker() + 1024 5 QtWebEngineCore 0x000000012ac9ac44 base::internal::WorkerThread::RunBackgroundPooledWorker() + 20 6 QtWebEngineCore 0x000000012acede07 base::(anonymous namespace)::ThreadFunc(void*) + 87 7 libsystem_pthread.dylib 0x00007fff69187109 _pthread_start + 148 8 libsystem_pthread.dylib 0x00007fff69182b8b thread_start + 15 Thread 10:: Chrome_IOThread 0 libsystem_kernel.dylib 0x00007fff690ccb86 kevent64 + 10 1 QtWebEngineCore 0x000000012acfce6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330 2 QtWebEngineCore 0x000000012acfccc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167 3 QtWebEngineCore 0x000000012ac8562b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 4 QtWebEngineCore 0x000000012ac497cb base::RunLoop::Run() + 395 5 QtWebEngineCore 0x000000012ebc9f06 content::BrowserProcessSubThread::IOThreadRun(base::RunLoop*) + 102 6 QtWebEngineCore 0x000000012aca4a7d base::Thread::ThreadMain() + 413 7 QtWebEngineCore 0x000000012acede07 base::(anonymous namespace)::ThreadFunc(void*) + 87 8 libsystem_pthread.dylib 0x00007fff69187109 _pthread_start + 148 9 libsystem_pthread.dylib 0x00007fff69182b8b thread_start + 15 Thread 11:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff690c3dea mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff690c4160 mach_msg + 60 2 QtWebEngineCore 0x000000012acf2492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x000000012acf22cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x000000012ac1a1db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171 5 QtWebEngineCore 0x000000012ac8562b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 6 QtWebEngineCore 0x000000012ac497cb base::RunLoop::Run() + 395 7 QtWebEngineCore 0x000000012aca4a7d base::Thread::ThreadMain() + 413 8 QtWebEngineCore 0x000000012acede07 base::(anonymous namespace)::ThreadFunc(void*) + 87 9 libsystem_pthread.dylib 0x00007fff69187109 _pthread_start + 148 10 libsystem_pthread.dylib 0x00007fff69182b8b thread_start + 15 Thread 12:: ThreadPoolForegroundWorker 0 libsystem_kernel.dylib 0x00007fff690c3dea mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff690c4160 mach_msg + 60 2 QtWebEngineCore 0x000000012acf2492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x000000012ac9a778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56 4 QtWebEngineCore 0x000000012ac9b150 base::internal::WorkerThread::RunWorker() + 1024 5 QtWebEngineCore 0x000000012ac9acd4 base::internal::WorkerThread::RunPooledWorker() + 20 6 QtWebEngineCore 0x000000012acede07 base::(anonymous namespace)::ThreadFunc(void*) + 87 7 libsystem_pthread.dylib 0x00007fff69187109 _pthread_start + 148 8 libsystem_pthread.dylib 0x00007fff69182b8b thread_start + 15 Thread 13:: CompositorTileWorker1 0 libsystem_kernel.dylib 0x00007fff690c6872 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff69187425 _pthread_cond_wait + 698 2 QtWebEngineCore 0x000000012ace9e18 base::ConditionVariable::Wait() + 104 3 QtWebEngineCore 0x000000012bfa15f8 non-virtual thunk to cc::SingleThreadTaskGraphRunner::Run() + 56 4 QtWebEngineCore 0x000000012acede07 base::(anonymous namespace)::ThreadFunc(void*) + 87 5 libsystem_pthread.dylib 0x00007fff69187109 _pthread_start + 148 6 libsystem_pthread.dylib 0x00007fff69182b8b thread_start + 15 Thread 14:: Chrome_InProcGpuThread 0 libsystem_kernel.dylib 0x00007fff690c3dea mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff690c4160 mach_msg + 60 2 QtWebEngineCore 0x000000012acf2492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x000000012ac1a20f base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 223 4 QtWebEngineCore 0x000000012ac8562b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 5 QtWebEngineCore 0x000000012ac497cb base::RunLoop::Run() + 395 6 QtWebEngineCore 0x000000012aca4a7d base::Thread::ThreadMain() + 413 7 QtWebEngineCore 0x000000012acede07 base::(anonymous namespace)::ThreadFunc(void*) + 87 8 libsystem_pthread.dylib 0x00007fff69187109 _pthread_start + 148 9 libsystem_pthread.dylib 0x00007fff69182b8b thread_start + 15 Thread 15:: Chrome_ChildIOThread 0 libsystem_kernel.dylib 0x00007fff690ccb86 kevent64 + 10 1 QtWebEngineCore 0x000000012acfce6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330 2 QtWebEngineCore 0x000000012acfccc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167 3 QtWebEngineCore 0x000000012ac8562b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 4 QtWebEngineCore 0x000000012ac497cb base::RunLoop::Run() + 395 5 QtWebEngineCore 0x000000012aca4a7d base::Thread::ThreadMain() + 413 6 QtWebEngineCore 0x000000012acede07 base::(anonymous namespace)::ThreadFunc(void*) + 87 7 libsystem_pthread.dylib 0x00007fff69187109 _pthread_start + 148 8 libsystem_pthread.dylib 0x00007fff69182b8b thread_start + 15 Thread 16:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff690c3dea mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff690c4160 mach_msg + 60 2 QtWebEngineCore 0x000000012acf2492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x000000012acf22cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x000000012ac1a1db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171 5 QtWebEngineCore 0x000000012ac8562b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 6 QtWebEngineCore 0x000000012ac497cb base::RunLoop::Run() + 395 7 QtWebEngineCore 0x000000012aca4a7d base::Thread::ThreadMain() + 413 8 QtWebEngineCore 0x000000012acede07 base::(anonymous namespace)::ThreadFunc(void*) + 87 9 libsystem_pthread.dylib 0x00007fff69187109 _pthread_start + 148 10 libsystem_pthread.dylib 0x00007fff69182b8b thread_start + 15 Thread 17:: VizCompositorThread 0 libsystem_kernel.dylib 0x00007fff690c3dea mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff690c4160 mach_msg + 60 2 QtWebEngineCore 0x000000012acf2492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x000000012acf22cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x000000012ac1a1db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171 5 QtWebEngineCore 0x000000012ac8562b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 6 QtWebEngineCore 0x000000012ac497cb base::RunLoop::Run() + 395 7 QtWebEngineCore 0x000000012aca4a7d base::Thread::ThreadMain() + 413 8 QtWebEngineCore 0x000000012acede07 base::(anonymous namespace)::ThreadFunc(void*) + 87 9 libsystem_pthread.dylib 0x00007fff69187109 _pthread_start + 148 10 libsystem_pthread.dylib 0x00007fff69182b8b thread_start + 15 Thread 18:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff690c3dea mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff690c4160 mach_msg + 60 2 QtWebEngineCore 0x000000012acf2492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x000000012acf22cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x000000012ac1a1db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171 5 QtWebEngineCore 0x000000012ac8562b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 6 QtWebEngineCore 0x000000012ac497cb base::RunLoop::Run() + 395 7 QtWebEngineCore 0x000000012aca4a7d base::Thread::ThreadMain() + 413 8 QtWebEngineCore 0x000000012acede07 base::(anonymous namespace)::ThreadFunc(void*) + 87 9 libsystem_pthread.dylib 0x00007fff69187109 _pthread_start + 148 10 libsystem_pthread.dylib 0x00007fff69182b8b thread_start + 15 Thread 19:: ThreadPoolSingleThreadForegroundBlocking0 0 libsystem_kernel.dylib 0x00007fff690c3dea mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff690c4160 mach_msg + 60 2 QtWebEngineCore 0x000000012acf2492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x000000012acf22cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x000000012ac9a76a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42 5 QtWebEngineCore 0x000000012ac9b150 base::internal::WorkerThread::RunWorker() + 1024 6 QtWebEngineCore 0x000000012ac9ad34 base::internal::WorkerThread::RunDedicatedWorker() + 20 7 QtWebEngineCore 0x000000012acede07 base::(anonymous namespace)::ThreadFunc(void*) + 87 8 libsystem_pthread.dylib 0x00007fff69187109 _pthread_start + 148 9 libsystem_pthread.dylib 0x00007fff69182b8b thread_start + 15 Thread 20:: MemoryInfra 0 libsystem_kernel.dylib 0x00007fff690c3dea mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff690c4160 mach_msg + 60 2 QtWebEngineCore 0x000000012acf2492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x000000012acf22cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x000000012ac1a1db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171 5 QtWebEngineCore 0x000000012ac8562b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 6 QtWebEngineCore 0x000000012ac497cb base::RunLoop::Run() + 395 7 QtWebEngineCore 0x000000012aca4a7d base::Thread::ThreadMain() + 413 8 QtWebEngineCore 0x000000012acede07 base::(anonymous namespace)::ThreadFunc(void*) + 87 9 libsystem_pthread.dylib 0x00007fff69187109 _pthread_start + 148 10 libsystem_pthread.dylib 0x00007fff69182b8b thread_start + 15 Thread 21:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff690c3dea mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff690c4160 mach_msg + 60 2 QtWebEngineCore 0x000000012acf2492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x000000012acf22cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x000000012ac1a1db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171 5 QtWebEngineCore 0x000000012ac8562b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 6 QtWebEngineCore 0x000000012ac497cb base::RunLoop::Run() + 395 7 QtWebEngineCore 0x000000012aca4a7d base::Thread::ThreadMain() + 413 8 QtWebEngineCore 0x000000012acede07 base::(anonymous namespace)::ThreadFunc(void*) + 87 9 libsystem_pthread.dylib 0x00007fff69187109 _pthread_start + 148 10 libsystem_pthread.dylib 0x00007fff69182b8b thread_start + 15 Thread 22: 0 libsystem_pthread.dylib 0x00007fff69182b68 start_wqthread + 0 Thread 23:: com.apple.NSEventThread 0 libsystem_kernel.dylib 0x00007fff690c3dea mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff690c4160 mach_msg + 60 2 com.apple.CoreFoundation 0x00007fff2f49b825 __CFRunLoopServiceMachPort + 247 3 com.apple.CoreFoundation 0x00007fff2f49a2f2 __CFRunLoopRun + 1319 4 com.apple.CoreFoundation 0x00007fff2f49976e CFRunLoopRunSpecific + 462 5 com.apple.AppKit 0x00007fff2c8afea4 _NSEventThread + 132 6 libsystem_pthread.dylib 0x00007fff69187109 _pthread_start + 148 7 libsystem_pthread.dylib 0x00007fff69182b8b thread_start + 15 Thread 24:: ThreadPoolSingleThreadSharedBackgroundBlocking1 0 libsystem_kernel.dylib 0x00007fff690c3dea mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff690c4160 mach_msg + 60 2 QtWebEngineCore 0x000000012acf2492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x000000012acf22cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x000000012ac9a76a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42 5 QtWebEngineCore 0x000000012ac9ae3d base::internal::WorkerThread::RunWorker() + 237 6 QtWebEngineCore 0x000000012ac9ac74 base::internal::WorkerThread::RunBackgroundSharedWorker() + 20 7 QtWebEngineCore 0x000000012acede07 base::(anonymous namespace)::ThreadFunc(void*) + 87 8 libsystem_pthread.dylib 0x00007fff69187109 _pthread_start + 148 9 libsystem_pthread.dylib 0x00007fff69182b8b thread_start + 15 Thread 25:: ThreadPoolBackgroundWorker 0 libsystem_kernel.dylib 0x00007fff690c3dea mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff690c4160 mach_msg + 60 2 QtWebEngineCore 0x000000012acf2492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x000000012ac9a778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56 4 QtWebEngineCore 0x000000012ac9ae3d base::internal::WorkerThread::RunWorker() + 237 5 QtWebEngineCore 0x000000012ac9ac44 base::internal::WorkerThread::RunBackgroundPooledWorker() + 20 6 QtWebEngineCore 0x000000012acede07 base::(anonymous namespace)::ThreadFunc(void*) + 87 7 libsystem_pthread.dylib 0x00007fff69187109 _pthread_start + 148 8 libsystem_pthread.dylib 0x00007fff69182b8b thread_start + 15 Thread 26: 0 libsystem_pthread.dylib 0x00007fff69182b68 start_wqthread + 0 Thread 27:: ThreadPoolForegroundWorker 0 libsystem_kernel.dylib 0x00007fff690c3dea mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff690c4160 mach_msg + 60 2 QtWebEngineCore 0x000000012acf2492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x000000012ac9a778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56 4 QtWebEngineCore 0x000000012ac9ae3d base::internal::WorkerThread::RunWorker() + 237 5 QtWebEngineCore 0x000000012ac9acd4 base::internal::WorkerThread::RunPooledWorker() + 20 6 QtWebEngineCore 0x000000012acede07 base::(anonymous namespace)::ThreadFunc(void*) + 87 7 libsystem_pthread.dylib 0x00007fff69187109 _pthread_start + 148 8 libsystem_pthread.dylib 0x00007fff69182b8b thread_start + 15 Thread 28: 0 libsystem_pthread.dylib 0x00007fff69182b68 start_wqthread + 0 Thread 29: 0 libsystem_pthread.dylib 0x00007fff69182b68 start_wqthread + 0 Thread 30: 0 libsystem_pthread.dylib 0x00007fff69182b68 start_wqthread + 0 Thread 31: 0 libsystem_pthread.dylib 0x00007fff69182b68 start_wqthread + 0 Thread 32: 0 libsystem_kernel.dylib 0x00007fff690c6872 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff69187425 _pthread_cond_wait + 698 2 org.python.python 0x000000010f33ad6c PyThread_acquire_lock_timed + 700 3 org.python.python 0x000000010f389a1f acquire_timed + 111 4 org.python.python 0x000000010f389b30 lock_PyThread_acquire_lock + 48 5 org.python.python 0x000000010f214e54 method_vectorcall_VARARGS_KEYWORDS + 388 6 org.python.python 0x000000010f2e458c call_function + 732 7 org.python.python 0x000000010f2e1a92 _PyEval_EvalFrameDefault + 25186 8 org.python.python 0x000000010f2e5283 _PyEval_EvalCode + 2611 9 org.python.python 0x000000010f20c8d1 _PyFunction_Vectorcall + 289 10 org.python.python 0x000000010f2e458c call_function + 732 11 org.python.python 0x000000010f2e1a92 _PyEval_EvalFrameDefault + 25186 12 org.python.python 0x000000010f2e5283 _PyEval_EvalCode + 2611 13 org.python.python 0x000000010f20c8d1 _PyFunction_Vectorcall + 289 14 org.python.python 0x000000010f2e458c call_function + 732 15 org.python.python 0x000000010f2e1a92 _PyEval_EvalFrameDefault + 25186 16 org.python.python 0x000000010f20c948 function_code_fastcall + 104 17 org.python.python 0x000000010f2e458c call_function + 732 18 org.python.python 0x000000010f2e1a92 _PyEval_EvalFrameDefault + 25186 19 org.python.python 0x000000010f20c948 function_code_fastcall + 104 20 org.python.python 0x000000010f2e458c call_function + 732 21 org.python.python 0x000000010f2e1a92 _PyEval_EvalFrameDefault + 25186 22 org.python.python 0x000000010f20c948 function_code_fastcall + 104 23 org.python.python 0x000000010f20e9d2 method_vectorcall + 274 24 org.python.python 0x000000010f3893c6 t_bootstrap + 70 25 org.python.python 0x000000010f33a8c9 pythread_wrapper + 25 26 libsystem_pthread.dylib 0x00007fff69187109 _pthread_start + 148 27 libsystem_pthread.dylib 0x00007fff69182b8b thread_start + 15 Thread 0 crashed with X86 Thread State (64-bit): rax: 0x0000000000000000 rbx: 0x000000011e71ddc0 rcx: 0x00007fbec8047a58 rdx: 0x0000000000000000 rdi: 0x0000000000000307 rsi: 0x000000000000000b rbp: 0x00007fbec8047a80 rsp: 0x00007fbec8047a58 r8: 0x00007fbec8047f48 r9: 0xe71b8a02e538cdfa r10: 0x000000011e71ddc0 r11: 0x0000000000000246 r12: 0x0000000000000307 r13: 0x0000600000904048 r14: 0x000000000000000b r15: 0x0000000000000016 rip: 0x00007fff690ca32a rfl: 0x0000000000000246 cr2: 0x00007fbec8047f48 Logical CPU: 0 Error Code: 0x02000148 Trap Number: 133 Binary Images: 0x10f1c6000 - 0x10f1c6ff3 +edu.ucsf.cgl.ChimeraX (1.4.0 - 1.4.0.0) /Applications/ChimeraX_Daily.app/Contents/MacOS/ChimeraX 0x10f1d0000 - 0x10f434fff +org.python.python (3.9.6, [c] 2001-2019 Python Software Foundation. - 3.9.6) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/Python 0x10f5ad000 - 0x10f5affff +_heapq.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_heapq.cpython-39-darwin.so 0x10f5b7000 - 0x10f5bbff7 +binascii.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/binascii.cpython-39-darwin.so 0x10f5c5000 - 0x10f5cafff +zlib.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/zlib.cpython-39-darwin.so 0x10f5d4000 - 0x10f5d6fff +_bz2.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_bz2.cpython-39-darwin.so 0x10f5df000 - 0x10f610fff +_lzma.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_lzma.cpython-39-darwin.so 0x10f61f000 - 0x10f620fff +grp.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/grp.cpython-39-darwin.so 0x10f629000 - 0x10f62eff7 +_struct.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_struct.cpython-39-darwin.so 0x10f63b000 - 0x10f643fff +math.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/math.cpython-39-darwin.so 0x10f64f000 - 0x10f650ff7 +_bisect.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_bisect.cpython-39-darwin.so 0x10f658000 - 0x10f659fff +_random.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_random.cpython-39-darwin.so 0x10f662000 - 0x10f666fff +_sha512.cpython-39-darwin.so (0) 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0x7fff67dfafde libobjc.A.dylib (787.1) /usr/lib/libobjc.A.dylib 0x7fff67e0d000 - 0x7fff67e11fff libpam.2.dylib (25.100.1) /usr/lib/libpam.2.dylib 0x7fff67e14000 - 0x7fff67e4afff libpcap.A.dylib (89.120.2) /usr/lib/libpcap.A.dylib 0x7fff67e8a000 - 0x7fff67e98ff9 libperfcheck.dylib (37.100.2) /usr/lib/libperfcheck.dylib 0x7fff67e99000 - 0x7fff67e9cff3 libpmenergy.dylib (214.120.2) /usr/lib/libpmenergy.dylib 0x7fff67e9d000 - 0x7fff67e9ffff libpmsample.dylib (214.120.2) /usr/lib/libpmsample.dylib 0x7fff67ece000 - 0x7fff67ee6fff libresolv.9.dylib (67.40.1) /usr/lib/libresolv.9.dylib 0x7fff67ee8000 - 0x7fff67f2cff7 libsandbox.1.dylib (1217.141.8) /usr/lib/libsandbox.1.dylib 0x7fff67f40000 - 0x7fff67f41ff7 libspindump.dylib (281.3) /usr/lib/libspindump.dylib 0x7fff67f42000 - 0x7fff6812cff7 libsqlite3.dylib (308.6) /usr/lib/libsqlite3.dylib 0x7fff68322000 - 0x7fff6837cff8 libusrtcp.dylib (1880.120.4) /usr/lib/libusrtcp.dylib 0x7fff6837d000 - 0x7fff68380ffb libutil.dylib (57.140.1) /usr/lib/libutil.dylib 0x7fff68381000 - 0x7fff6838efff libxar.1.dylib (425.7) /usr/lib/libxar.1.dylib 0x7fff68394000 - 0x7fff68476fff libxml2.2.dylib (33.9) /usr/lib/libxml2.2.dylib 0x7fff6847a000 - 0x7fff684a2fff libxslt.1.dylib (16.12) /usr/lib/libxslt.1.dylib 0x7fff684a3000 - 0x7fff684b5ff3 libz.1.dylib (76) /usr/lib/libz.1.dylib 0x7fff68d64000 - 0x7fff68d69ff3 libcache.dylib (83) /usr/lib/system/libcache.dylib 0x7fff68d6a000 - 0x7fff68d75fff libcommonCrypto.dylib (60165.120.1) /usr/lib/system/libcommonCrypto.dylib 0x7fff68d76000 - 0x7fff68d7dfff libcompiler_rt.dylib (101.2) /usr/lib/system/libcompiler_rt.dylib 0x7fff68d7e000 - 0x7fff68d87ff7 libcopyfile.dylib (166.40.1) /usr/lib/system/libcopyfile.dylib 0x7fff68d88000 - 0x7fff68e1afdb libcorecrypto.dylib (866.140.2) /usr/lib/system/libcorecrypto.dylib 0x7fff68f27000 - 0x7fff68f67ff0 libdispatch.dylib (1173.100.2) /usr/lib/system/libdispatch.dylib 0x7fff68f68000 - 0x7fff68f9efff libdyld.dylib (750.7) /usr/lib/system/libdyld.dylib 0x7fff68f9f000 - 0x7fff68f9fffb libkeymgr.dylib (30) /usr/lib/system/libkeymgr.dylib 0x7fff68fa0000 - 0x7fff68facff3 libkxld.dylib (6153.141.59) /usr/lib/system/libkxld.dylib 0x7fff68fad000 - 0x7fff68fadff7 liblaunch.dylib (1738.140.3) /usr/lib/system/liblaunch.dylib 0x7fff68fae000 - 0x7fff68fb3ff7 libmacho.dylib (959.0.1) /usr/lib/system/libmacho.dylib 0x7fff68fb4000 - 0x7fff68fb6ff3 libquarantine.dylib (110.40.6) /usr/lib/system/libquarantine.dylib 0x7fff68fb7000 - 0x7fff68fb8ff7 libremovefile.dylib (48) /usr/lib/system/libremovefile.dylib 0x7fff68fb9000 - 0x7fff68fd0ff3 libsystem_asl.dylib (377.60.4) /usr/lib/system/libsystem_asl.dylib 0x7fff68fd1000 - 0x7fff68fd1ff7 libsystem_blocks.dylib (74) /usr/lib/system/libsystem_blocks.dylib 0x7fff68fd2000 - 0x7fff69059fff libsystem_c.dylib (1353.100.4) /usr/lib/system/libsystem_c.dylib 0x7fff6905a000 - 0x7fff6905dffb libsystem_configuration.dylib (1061.141.2) /usr/lib/system/libsystem_configuration.dylib 0x7fff6905e000 - 0x7fff69061fff libsystem_coreservices.dylib (114.1) /usr/lib/system/libsystem_coreservices.dylib 0x7fff69062000 - 0x7fff6906afff libsystem_darwin.dylib (1353.100.4) /usr/lib/system/libsystem_darwin.dylib 0x7fff6906b000 - 0x7fff69072fff libsystem_dnssd.dylib (1096.100.3) /usr/lib/system/libsystem_dnssd.dylib 0x7fff69073000 - 0x7fff69074ffb libsystem_featureflags.dylib (17) /usr/lib/system/libsystem_featureflags.dylib 0x7fff69075000 - 0x7fff690c2ff7 libsystem_info.dylib (538) /usr/lib/system/libsystem_info.dylib 0x7fff690c3000 - 0x7fff690efff7 libsystem_kernel.dylib (6153.141.59) /usr/lib/system/libsystem_kernel.dylib 0x7fff690f0000 - 0x7fff69137fff libsystem_m.dylib (3178) /usr/lib/system/libsystem_m.dylib 0x7fff69138000 - 0x7fff6915ffff libsystem_malloc.dylib (283.100.6) /usr/lib/system/libsystem_malloc.dylib 0x7fff69160000 - 0x7fff6916dffb libsystem_networkextension.dylib (1095.140.2) /usr/lib/system/libsystem_networkextension.dylib 0x7fff6916e000 - 0x7fff69177ff7 libsystem_notify.dylib (241.100.2) /usr/lib/system/libsystem_notify.dylib 0x7fff69178000 - 0x7fff69180fef libsystem_platform.dylib (220.100.1) /usr/lib/system/libsystem_platform.dylib 0x7fff69181000 - 0x7fff6918bfff libsystem_pthread.dylib (416.100.3) /usr/lib/system/libsystem_pthread.dylib 0x7fff6918c000 - 0x7fff69190ff3 libsystem_sandbox.dylib (1217.141.8) /usr/lib/system/libsystem_sandbox.dylib 0x7fff69191000 - 0x7fff69193fff libsystem_secinit.dylib (62.100.2) /usr/lib/system/libsystem_secinit.dylib 0x7fff69194000 - 0x7fff6919bffb libsystem_symptoms.dylib (1238.120.2) /usr/lib/system/libsystem_symptoms.dylib 0x7fff6919c000 - 0x7fff691b2ff2 libsystem_trace.dylib (1147.120.1) /usr/lib/system/libsystem_trace.dylib 0x7fff691b4000 - 0x7fff691b9ff7 libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib 0x7fff691ba000 - 0x7fff691efffe libxpc.dylib (1738.140.3) /usr/lib/system/libxpc.dylib External Modification Summary: Calls made by other processes targeting this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by all processes on this machine: task_for_pid: 8975 thread_create: 0 thread_set_state: 0 VM Region Summary: ReadOnly portion of Libraries: Total=1.0G resident=0K(0%) swapped_out_or_unallocated=1.0G(100%) Writable regions: Total=3.2G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=3.2G(100%) VIRTUAL REGION REGION TYPE SIZE COUNT (non-coalesced) =========== ======= ======= Accelerate framework 384K 3 Activity Tracing 256K 1 CG backing stores 2084K 3 CG image 464K 9 CoreAnimation 228K 19 CoreGraphics 8K 1 CoreImage 24K 2 CoreUI image data 2244K 19 Foundation 4K 1 Kernel Alloc Once 8K 1 MALLOC 1.6G 111 MALLOC guard page 48K 10 MALLOC_MEDIUM (reserved) 952.0M 9 reserved VM address space (unallocated) MALLOC_NANO (reserved) 256.0M 1 reserved VM address space (unallocated) Mach message 24K 4 OpenGL GLSL 384K 4 STACK GUARD 128K 32 Stack 167.2M 33 Stack Guard 56.0M 1 VM_ALLOCATE 104.6M 87 VM_ALLOCATE (reserved) 160.0M 2 reserved VM address space (unallocated) __DATA 64.0M 541 __DATA_CONST 132K 6 __FONT_DATA 4K 1 __GLSLBUILTINS 5176K 1 __LINKEDIT 482.0M 147 __OBJC_RO 32.3M 1 __OBJC_RW 1904K 1 __TEXT 555.2M 508 __UNICODE 564K 1 mapped file 401.1M 51 shared memory 2844K 25 =========== ======= ======= TOTAL 4.8G 1636 TOTAL, minus reserved VM space 3.5G 1636 ===== Log before crash start ===== UCSF ChimeraX version: 1.4.dev202112082248 (2021-12-08) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""/Users/luca/Dropbox (Cambridge University)/Journal Club/JC > 28.04.2022/MMR.cxs"" opened ChimeraX session ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.4.dev202112082248 (2021-12-08) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 ATI-3.10.23 OpenGL renderer: AMD Radeon Pro Vega 48 OpenGL Engine OpenGL vendor: ATI Technologies Inc.Hardware: Hardware Overview: Model Name: iMac Model Identifier: iMac19,1 Processor Name: 8-Core Intel Core i9 Processor Speed: 3.6 GHz Number of Processors: 1 Total Number of Cores: 8 L2 Cache (per Core): 256 KB L3 Cache: 16 MB Hyper-Threading Technology: Enabled Memory: 32 GB Boot ROM Version: 1731.100.125.0.0 SMC Version (system): 2.46f13 Software: System Software Overview: System Version: macOS 10.15.7 (19H1824) Kernel Version: Darwin 19.6.0 Time since boot: 15:29 Graphics/Displays: Radeon Pro Vega 48: Chipset Model: Radeon Pro Vega 48 Type: GPU Bus: PCIe PCIe Lane Width: x16 VRAM (Total): 8 GB Vendor: AMD (0x1002) Device ID: 0x6869 Revision ID: 0x0000 ROM Revision: 113-D0650E-072 VBIOS Version: 113-D05001A1XG-011 Option ROM Version: 113-D05001A1XG-011 EFI Driver Version: 01.01.072 Metal: Supported, feature set macOS GPUFamily2 v1 Displays: iMac: Display Type: Built-In Retina LCD Resolution: 5120 x 2880 Retina Framebuffer Depth: 30-Bit Color (ARGB2101010) Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: No Connection Type: Internal Locale: (None, 'UTF-8') PyQt5 5.15.2, Qt 5.15.2 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 appnope: 0.1.2 Babel: 2.9.1 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2021.5.30 cftime: 1.5.1.1 charset-normalizer: 2.0.9 ChimeraX-AddCharge: 1.2.2 ChimeraX-AddH: 2.1.11 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.2.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.31.5 ChimeraX-AtomicLibrary: 4.2 ChimeraX-AtomSearch: 2.0 ChimeraX-AtomSearchLibrary: 1.0 ChimeraX-AxesPlanes: 2.1 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.0 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.6.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.1 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.2 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.2.2 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5 ChimeraX-CommandLine: 1.1.5 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.4.dev202112082248 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0 ChimeraX-DataFormats: 1.2.2 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1.5 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.1.2 ChimeraX-Help: 1.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0 ChimeraX-Label: 1.1 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.1 ChimeraX-Map: 1.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 2.0.4 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.4 ChimeraX-MMTF: 2.1 ChimeraX-Modeller: 1.5.1 ChimeraX-ModelPanel: 1.3.1 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.2 ChimeraX-OpenCommand: 1.8 ChimeraX-PDB: 2.6.5 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0.1 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.4.6 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.1 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.6.1 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.0.1 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1 ChimeraX-ToolshedUtils: 1.2 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.15.1 ChimeraX-uniprot: 2.2 ChimeraX-UnitCell: 1.0 ChimeraX-ViewDockX: 1.0.1 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.4 cxservices: 1.1 cycler: 0.11.0 Cython: 0.29.24 decorator: 5.1.0 docutils: 0.17.1 filelock: 3.0.12 funcparserlib: 0.3.6 grako: 3.16.5 h5py: 3.6.0 html2text: 2020.1.16 idna: 3.3 ihm: 0.21 imagecodecs: 2021.4.28 imagesize: 1.3.0 ipykernel: 5.5.5 ipython: 7.23.1 ipython-genutils: 0.2.0 jedi: 0.18.0 Jinja2: 3.0.1 jupyter-client: 6.1.12 jupyter-core: 4.9.1 kiwisolver: 1.3.2 lxml: 4.6.3 lz4: 3.1.3 MarkupSafe: 2.0.1 matplotlib: 3.4.3 matplotlib-inline: 0.1.3 msgpack: 1.0.2 netCDF4: 1.5.7 networkx: 2.6.3 numexpr: 2.8.0 numpy: 1.21.2 openvr: 1.16.801 packaging: 21.0 ParmEd: 3.2.0 parso: 0.8.3 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 8.3.2 pip: 21.2.4 pkginfo: 1.7.1 prompt-toolkit: 3.0.24 psutil: 5.8.0 ptyprocess: 0.7.0 pycollada: 0.7.1 pydicom: 2.1.2 Pygments: 2.10.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.6 PyQt5-commercial: 5.15.2 PyQt5-sip: 12.8.1 PyQtWebEngine-commercial: 5.15.2 python-dateutil: 2.8.2 pytz: 2021.3 pyzmq: 22.3.0 qtconsole: 5.1.1 QtPy: 1.11.3 RandomWords: 0.3.0 requests: 2.26.0 scipy: 1.7.1 setuptools: 57.5.0 sfftk-rw: 0.7.1 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 Sphinx: 4.2.0 sphinx-autodoc-typehints: 1.12.0 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 suds-jurko: 0.6 tifffile: 2021.4.8 tinyarray: 1.2.3 tornado: 6.1 traitlets: 5.1.1 urllib3: 1.26.7 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.37.0 wheel-filename: 1.3.0 }}} " defect closed normal Core duplicate all ChimeraX