![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 4 years ago
Last modified 4 years ago
#6991 closed defect
ChimeraX bug report submission — at Initial Version
| Reported by: | Owned by: | ||
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Core | Version: | |
| Keywords: | Cc: | Eric Pettersen | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Windows-10-10.0.19044
ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC)
Description
(Describe the actions that caused this problem to occur here)
Log:
UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
> open C:/Users/jason431/Desktop/RESCmovie/tile-3.cxs
Log from Mon May 30 20:15:08 2022UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
> open C:/Users/jason431/Desktop/RESCmovie/tile.cxs
Log from Mon May 30 20:03:06 2022UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
> open C:/Users/jason431/Desktop/RESCmovie/rescb-17.cxs
Opened RESC-B0_3.4A_0910.mrc 1 as #3.2, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 2 as #3.3, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 10 as #3.11, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 5 as #4.6, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 3 as #5.4, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 4 as #5.5, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 6 as #5.7, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 8 as #5.9, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 9 as #5.10, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 7 zone as #6, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 7 zone as #7, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
Opened RESC-C_new.mrc 1 as #10.2, grid size 256,256,256, pixel 1.06, shown at
step 1, values float32
Opened RESC-C_new.mrc 2 as #10.3, grid size 256,256,256, pixel 1.06, shown at
step 1, values float32
Opened RESC-C_new.mrc 3 as #10.4, grid size 256,256,256, pixel 1.06, shown at
step 1, values float32
Opened RESC-C_new.mrc 4 as #10.5, grid size 256,256,256, pixel 1.06, shown at
step 1, values float32
Opened RESC-C_new.mrc 5 as #10.6, grid size 256,256,256, pixel 1.06, shown at
step 1, values float32
Opened RESC-C_new.mrc 6 as #10.7, grid size 256,256,256, pixel 1.06, shown at
step 1, values float32
Opened RESC-C_new.mrc 7 as #10.8, grid size 256,256,256, pixel 1.06, shown at
step 1, values float32
Opened RESC-C_new.mrc 8 as #10.9, grid size 256,256,256, pixel 1.06, shown at
step 1, values float32
Opened RESC-C_new.mrc 9 as #10.10, grid size 256,256,256, pixel 1.06, shown at
step 1, values float32
Opened RESC-C_new.mrc 1 zone as #11, grid size 256,256,256, pixel 1.06, shown
at level 0.00908, step 1, values float32
Opened RESC-C_new.mrc 4 zone as #15, grid size 256,256,256, pixel 1.06, shown
at level 0.0424, step 1, values float32
Opened RESC-C_new.mrc 6 zone as #17, grid size 256,256,256, pixel 1.06, shown
at level 0.0352, step 1, values float32
Opened RESC-C_new.mrc 8 zone as #19, grid size 256,256,256, pixel 1.06, shown
at level 0.0345, step 1, values float32
Log from Mon May 30 19:09:45 2022UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
> open C:/Users/jason431/Desktop/RESCmovie/rescb-16.cxs
Opened RESC-B0_3.4A_0910.mrc 1 as #3.2, grid size 256,256,256, pixel 1.06,
shown at level 0.0134, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 2 as #3.3, grid size 256,256,256, pixel 1.06,
shown at level 0.0123, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 10 as #3.11, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 5 as #4.6, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 3 as #5.4, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 4 as #5.5, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 6 as #5.7, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 8 as #5.9, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 9 as #5.10, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 7 zone as #6, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 7 zone as #7, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
Opened RESC-C_new.mrc 1 as #10.2, grid size 256,256,256, pixel 1.06, shown at
step 1, values float32
Opened RESC-C_new.mrc 2 as #10.3, grid size 256,256,256, pixel 1.06, shown at
step 1, values float32
Opened RESC-C_new.mrc 3 as #10.4, grid size 256,256,256, pixel 1.06, shown at
level 0.0289, step 1, values float32
Opened RESC-C_new.mrc 4 as #10.5, grid size 256,256,256, pixel 1.06, shown at
level 0.0424, step 1, values float32
Opened RESC-C_new.mrc 5 as #10.6, grid size 256,256,256, pixel 1.06, shown at
level 0.0274, step 1, values float32
Opened RESC-C_new.mrc 6 as #10.7, grid size 256,256,256, pixel 1.06, shown at
level 0.0352, step 1, values float32
Opened RESC-C_new.mrc 7 as #10.8, grid size 256,256,256, pixel 1.06, shown at
level 0.0152, step 1, values float32
Opened RESC-C_new.mrc 8 as #10.9, grid size 256,256,256, pixel 1.06, shown at
level 0.0345, step 1, values float32
Opened RESC-C_new.mrc 9 as #10.10, grid size 256,256,256, pixel 1.06, shown at
level 0.0311, step 1, values float32
Opened RESC-C_new.mrc 1 zone as #11, grid size 256,256,256, pixel 1.06, shown
at level 0.00908, step 1, values float32
Opened RESC-C_new.mrc 4 zone as #15, grid size 256,256,256, pixel 1.06, shown
at level 0.0424, step 1, values float32
Opened RESC-C_new.mrc 6 zone as #17, grid size 256,256,256, pixel 1.06, shown
at level 0.0352, step 1, values float32
Opened RESC-C_new.mrc 8 zone as #19, grid size 256,256,256, pixel 1.06, shown
at level 0.0345, step 1, values float32
Log from Mon May 30 16:11:44 2022UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
> open C:/Users/jason431/Desktop/RESCmovie/rescb-15.cxs
Opened RESC-B0_3.4A_0910.mrc 1 as #3.2, grid size 256,256,256, pixel 1.06,
shown at level 0.0134, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 2 as #3.3, grid size 256,256,256, pixel 1.06,
shown at level 0.0123, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 10 as #3.11, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 5 as #4.6, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 3 as #5.4, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 4 as #5.5, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 6 as #5.7, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 8 as #5.9, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 9 as #5.10, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 7 zone as #6, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 7 zone as #7, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
Opened RESC-C_new.mrc 1 as #10.2, grid size 256,256,256, pixel 1.06, shown at
step 1, values float32
Opened RESC-C_new.mrc 2 as #10.3, grid size 256,256,256, pixel 1.06, shown at
step 1, values float32
Opened RESC-C_new.mrc 3 as #10.4, grid size 256,256,256, pixel 1.06, shown at
level 0.0289, step 1, values float32
Opened RESC-C_new.mrc 4 as #10.5, grid size 256,256,256, pixel 1.06, shown at
level 0.0424, step 1, values float32
Opened RESC-C_new.mrc 5 as #10.6, grid size 256,256,256, pixel 1.06, shown at
level 0.0274, step 1, values float32
Opened RESC-C_new.mrc 6 as #10.7, grid size 256,256,256, pixel 1.06, shown at
level 0.0352, step 1, values float32
Opened RESC-C_new.mrc 7 as #10.8, grid size 256,256,256, pixel 1.06, shown at
level 0.0152, step 1, values float32
Opened RESC-C_new.mrc 8 as #10.9, grid size 256,256,256, pixel 1.06, shown at
level 0.0345, step 1, values float32
Opened RESC-C_new.mrc 9 as #10.10, grid size 256,256,256, pixel 1.06, shown at
level 0.0311, step 1, values float32
Log from Mon May 30 15:07:39 2022UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
> open C:/Users/jason431/Desktop/RESCmovie/rescb-14.cxs
Opened RESC-B0_3.4A_0910.mrc 1 as #3.2, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 2 as #3.3, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 10 as #3.11, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 5 as #4.6, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 3 as #5.4, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 4 as #5.5, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 6 as #5.7, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 8 as #5.9, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 9 as #5.10, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 7 zone as #6, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 7 zone as #7, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
Log from Sat May 28 22:30:27 2022UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
> open C:\Users\jason431\Desktop\RESCmovie\rescb-10.cxs format session
Opened RESC-B0_3.4A_0910.mrc 1 as #3.2, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 2 as #3.3, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 10 as #3.11, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 5 as #4.6, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 3 as #5.4, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 4 as #5.5, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 6 as #5.7, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 8 as #5.9, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 9 as #5.10, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 7 zone as #6, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 7 zone as #7, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
Log from Sat May 28 20:28:25 2022UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
> open C:/Users/jason431/Desktop/RESCmovie/rescb-7.cxs
Opened RESC-B0_3.4A_0910.mrc 1 as #3.2, grid size 256,256,256, pixel 1.06,
shown at level 0.0134, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 2 as #3.3, grid size 256,256,256, pixel 1.06,
shown at level 0.0123, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 10 as #3.11, grid size 256,256,256, pixel 1.06,
shown at level 0.0124, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 5 as #4.6, grid size 256,256,256, pixel 1.06,
shown at level 0.0256, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 3 as #5.4, grid size 256,256,256, pixel 1.06,
shown at level 0.0225, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 4 as #5.5, grid size 256,256,256, pixel 1.06,
shown at level 0.03, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 6 as #5.7, grid size 256,256,256, pixel 1.06,
shown at level 0.0274, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 8 as #5.9, grid size 256,256,256, pixel 1.06,
shown at level 0.0291, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 9 as #5.10, grid size 256,256,256, pixel 1.06,
shown at level 0.0342, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 7 zone as #6, grid size 256,256,256, pixel 1.06,
shown at level 0.0164, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 7 zone as #7, grid size 256,256,256, pixel 1.06,
shown at level 0.0138, step 1, values float32
Log from Sat May 28 19:36:53 2022UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
> open C:/Users/jason431/Desktop/RESCmovie/rescb-6.cxs
Opened RESC-B0_3.4A_0910.mrc 1 as #3.2, grid size 256,256,256, pixel 1.06,
shown at level 0.0134, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 2 as #3.3, grid size 256,256,256, pixel 1.06,
shown at level 0.0123, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 10 as #3.11, grid size 256,256,256, pixel 1.06,
shown at level 0.0124, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 5 as #4.6, grid size 256,256,256, pixel 1.06,
shown at level 0.0256, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 3 as #5.4, grid size 256,256,256, pixel 1.06,
shown at level 0.0225, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 4 as #5.5, grid size 256,256,256, pixel 1.06,
shown at level 0.03, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 6 as #5.7, grid size 256,256,256, pixel 1.06,
shown at level 0.0274, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 8 as #5.9, grid size 256,256,256, pixel 1.06,
shown at level 0.0291, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 9 as #5.10, grid size 256,256,256, pixel 1.06,
shown at level 0.0342, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 7 zone as #6, grid size 256,256,256, pixel 1.06,
shown at level 0.0164, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 7 zone as #7, grid size 256,256,256, pixel 1.06,
shown at level 0.0138, step 1, values float32
Log from Sat May 28 19:30:35 2022UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
> open C:/Users/jason431/Desktop/RESCmovie/rescb-5.cxs
Opened RESC-B0_3.4A_0910.mrc 1 as #3.2, grid size 256,256,256, pixel 1.06,
shown at level 0.0134, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 2 as #3.3, grid size 256,256,256, pixel 1.06,
shown at level 0.0123, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 10 as #3.11, grid size 256,256,256, pixel 1.06,
shown at level 0.0124, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 5 as #4.6, grid size 256,256,256, pixel 1.06,
shown at level 0.0256, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 3 as #5.4, grid size 256,256,256, pixel 1.06,
shown at level 0.0225, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 4 as #5.5, grid size 256,256,256, pixel 1.06,
shown at level 0.03, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 6 as #5.7, grid size 256,256,256, pixel 1.06,
shown at level 0.0274, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 8 as #5.9, grid size 256,256,256, pixel 1.06,
shown at level 0.0291, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 9 as #5.10, grid size 256,256,256, pixel 1.06,
shown at level 0.0342, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 7 zone as #6, grid size 256,256,256, pixel 1.06,
shown at level 0.0164, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 7 zone as #7, grid size 256,256,256, pixel 1.06,
shown at level 0.0138, step 1, values float32
Log from Sat May 28 19:03:27 2022UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
> open C:/Users/jason431/Desktop/RESCmovie/rescb-2.cxs
Opened RESC-B0_3.4A_0910.mrc as #1.1, grid size 256,256,256, pixel 1.06, shown
at level 0.0142, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc as #1.2, grid size 256,256,256, pixel 1.06, shown
at level 0.0171, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc as #1.3, grid size 256,256,256, pixel 1.06, shown
at level 0.0243, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 0 as #3.1, grid size 256,256,256, pixel 1.06,
shown at level 0.0142, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 1 as #3.2, grid size 256,256,256, pixel 1.06,
shown at level 0.0142, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 2 as #3.3, grid size 256,256,256, pixel 1.06,
shown at level 0.0148, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 3 as #3.4, grid size 256,256,256, pixel 1.06,
shown at level 0.0142, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 4 as #3.5, grid size 256,256,256, pixel 1.06,
shown at level 0.0142, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 5 as #3.6, grid size 256,256,256, pixel 1.06,
shown at level 0.0142, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 6 as #3.7, grid size 256,256,256, pixel 1.06,
shown at level 0.0142, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 7 as #3.8, grid size 256,256,256, pixel 1.06,
shown at level 0.0163, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 8 as #3.9, grid size 256,256,256, pixel 1.06,
shown at level 0.0142, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 9 as #3.10, grid size 256,256,256, pixel 1.06,
shown at level 0.0142, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 10 as #3.11, grid size 256,256,256, pixel 1.06,
shown at level 0.0128, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 0 as #4.1, grid size 256,256,256, pixel 1.06,
shown at level 0.0171, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 1 as #4.2, grid size 256,256,256, pixel 1.06,
shown at level 0.0183, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 2 as #4.3, grid size 256,256,256, pixel 1.06,
shown at level 0.0178, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 3 as #4.4, grid size 256,256,256, pixel 1.06,
shown at level 0.0171, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 4 as #4.5, grid size 256,256,256, pixel 1.06,
shown at level 0.0171, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 5 as #4.6, grid size 256,256,256, pixel 1.06,
shown at level 0.0209, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 6 as #4.7, grid size 256,256,256, pixel 1.06,
shown at level 0.0235, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 7 as #4.8, grid size 256,256,256, pixel 1.06,
shown at level 0.0195, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 8 as #4.9, grid size 256,256,256, pixel 1.06,
shown at level 0.0171, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 9 as #4.10, grid size 256,256,256, pixel 1.06,
shown at level 0.0171, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 10 as #4.11, grid size 256,256,256, pixel 1.06,
shown at level 0.0171, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 0 as #5.1, grid size 256,256,256, pixel 1.06,
shown at level 0.0243, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 1 as #5.2, grid size 256,256,256, pixel 1.06,
shown at level 0.0255, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 2 as #5.3, grid size 256,256,256, pixel 1.06,
shown at level 0.0268, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 3 as #5.4, grid size 256,256,256, pixel 1.06,
shown at level 0.0341, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 4 as #5.5, grid size 256,256,256, pixel 1.06,
shown at level 0.0361, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 5 as #5.6, grid size 256,256,256, pixel 1.06,
shown at level 0.0315, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 6 as #5.7, grid size 256,256,256, pixel 1.06,
shown at level 0.0279, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 7 as #5.8, grid size 256,256,256, pixel 1.06,
shown at level 0.0232, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 8 as #5.9, grid size 256,256,256, pixel 1.06,
shown at level 0.0322, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 9 as #5.10, grid size 256,256,256, pixel 1.06,
shown at level 0.0336, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 10 as #5.11, grid size 256,256,256, pixel 1.06,
shown at level 0.0243, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 7 zone as #6, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
Log from Sat May 28 18:44:29 2022UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
> open C:/Users/jason431/Desktop/RESCmovie/rescb.cxs
Opened RESC-B0_3.4A_0910.mrc as #1.1, grid size 256,256,256, pixel 1.06, shown
at level 0.0142, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc as #1.2, grid size 256,256,256, pixel 1.06, shown
at level 0.0171, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc as #1.3, grid size 256,256,256, pixel 1.06, shown
at level 0.0243, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 0 as #3.1, grid size 256,256,256, pixel 1.06,
shown at level 0.0142, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 1 as #3.2, grid size 256,256,256, pixel 1.06,
shown at level 0.0142, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 2 as #3.3, grid size 256,256,256, pixel 1.06,
shown at level 0.0148, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 3 as #3.4, grid size 256,256,256, pixel 1.06,
shown at level 0.0142, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 4 as #3.5, grid size 256,256,256, pixel 1.06,
shown at level 0.0142, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 5 as #3.6, grid size 256,256,256, pixel 1.06,
shown at level 0.0142, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 6 as #3.7, grid size 256,256,256, pixel 1.06,
shown at level 0.0142, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 7 as #3.8, grid size 256,256,256, pixel 1.06,
shown at level 0.0163, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 8 as #3.9, grid size 256,256,256, pixel 1.06,
shown at level 0.0142, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 9 as #3.10, grid size 256,256,256, pixel 1.06,
shown at level 0.0142, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 10 as #3.11, grid size 256,256,256, pixel 1.06,
shown at level 0.0128, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 0 as #4.1, grid size 256,256,256, pixel 1.06,
shown at level 0.0171, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 1 as #4.2, grid size 256,256,256, pixel 1.06,
shown at level 0.0183, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 2 as #4.3, grid size 256,256,256, pixel 1.06,
shown at level 0.0178, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 3 as #4.4, grid size 256,256,256, pixel 1.06,
shown at level 0.0171, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 4 as #4.5, grid size 256,256,256, pixel 1.06,
shown at level 0.0171, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 5 as #4.6, grid size 256,256,256, pixel 1.06,
shown at level 0.0319, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 6 as #4.7, grid size 256,256,256, pixel 1.06,
shown at level 0.0235, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 7 as #4.8, grid size 256,256,256, pixel 1.06,
shown at level 0.0195, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 8 as #4.9, grid size 256,256,256, pixel 1.06,
shown at level 0.0171, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 9 as #4.10, grid size 256,256,256, pixel 1.06,
shown at level 0.0171, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 10 as #4.11, grid size 256,256,256, pixel 1.06,
shown at level 0.0171, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 0 as #5.1, grid size 256,256,256, pixel 1.06,
shown at level 0.0243, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 1 as #5.2, grid size 256,256,256, pixel 1.06,
shown at level 0.0255, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 2 as #5.3, grid size 256,256,256, pixel 1.06,
shown at level 0.0268, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 3 as #5.4, grid size 256,256,256, pixel 1.06,
shown at level 0.0341, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 4 as #5.5, grid size 256,256,256, pixel 1.06,
shown at level 0.0361, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 5 as #5.6, grid size 256,256,256, pixel 1.06,
shown at level 0.0315, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 6 as #5.7, grid size 256,256,256, pixel 1.06,
shown at level 0.0279, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 7 as #5.8, grid size 256,256,256, pixel 1.06,
shown at level 0.0232, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 8 as #5.9, grid size 256,256,256, pixel 1.06,
shown at level 0.0322, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 9 as #5.10, grid size 256,256,256, pixel 1.06,
shown at level 0.0336, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 10 as #5.11, grid size 256,256,256, pixel 1.06,
shown at level 0.0243, step 1, values float32
Log from Sat May 28 18:29:42 2022UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
> open C:/Users/jason431/Desktop/resc-fig1/rescb.cxs
Opened RESC-B0_3.4A_0910.mrc as #1.1, grid size 256,256,256, pixel 1.06, shown
at level 0.0142, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc as #1.2, grid size 256,256,256, pixel 1.06, shown
at level 0.0171, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc as #1.3, grid size 256,256,256, pixel 1.06, shown
at level 0.0243, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 0 as #3.1, grid size 256,256,256, pixel 1.06,
shown at level 0.0142, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 1 as #3.2, grid size 256,256,256, pixel 1.06,
shown at level 0.0142, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 2 as #3.3, grid size 256,256,256, pixel 1.06,
shown at level 0.0148, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 3 as #3.4, grid size 256,256,256, pixel 1.06,
shown at level 0.0142, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 4 as #3.5, grid size 256,256,256, pixel 1.06,
shown at level 0.0142, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 5 as #3.6, grid size 256,256,256, pixel 1.06,
shown at level 0.0142, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 6 as #3.7, grid size 256,256,256, pixel 1.06,
shown at level 0.0142, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 7 as #3.8, grid size 256,256,256, pixel 1.06,
shown at level 0.0163, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 8 as #3.9, grid size 256,256,256, pixel 1.06,
shown at level 0.0142, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 9 as #3.10, grid size 256,256,256, pixel 1.06,
shown at level 0.0142, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 10 as #3.11, grid size 256,256,256, pixel 1.06,
shown at level 0.0128, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 0 as #4.1, grid size 256,256,256, pixel 1.06,
shown at level 0.0171, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 1 as #4.2, grid size 256,256,256, pixel 1.06,
shown at level 0.0183, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 2 as #4.3, grid size 256,256,256, pixel 1.06,
shown at level 0.0178, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 3 as #4.4, grid size 256,256,256, pixel 1.06,
shown at level 0.0171, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 4 as #4.5, grid size 256,256,256, pixel 1.06,
shown at level 0.0171, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 5 as #4.6, grid size 256,256,256, pixel 1.06,
shown at level 0.0319, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 6 as #4.7, grid size 256,256,256, pixel 1.06,
shown at level 0.0235, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 7 as #4.8, grid size 256,256,256, pixel 1.06,
shown at level 0.0195, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 8 as #4.9, grid size 256,256,256, pixel 1.06,
shown at level 0.0171, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 9 as #4.10, grid size 256,256,256, pixel 1.06,
shown at level 0.0171, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 10 as #4.11, grid size 256,256,256, pixel 1.06,
shown at level 0.0171, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 0 as #5.1, grid size 256,256,256, pixel 1.06,
shown at level 0.0243, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 1 as #5.2, grid size 256,256,256, pixel 1.06,
shown at level 0.0255, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 2 as #5.3, grid size 256,256,256, pixel 1.06,
shown at level 0.0268, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 3 as #5.4, grid size 256,256,256, pixel 1.06,
shown at level 0.0341, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 4 as #5.5, grid size 256,256,256, pixel 1.06,
shown at level 0.0361, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 5 as #5.6, grid size 256,256,256, pixel 1.06,
shown at level 0.0315, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 6 as #5.7, grid size 256,256,256, pixel 1.06,
shown at level 0.0279, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 7 as #5.8, grid size 256,256,256, pixel 1.06,
shown at level 0.0232, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 8 as #5.9, grid size 256,256,256, pixel 1.06,
shown at level 0.0322, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 9 as #5.10, grid size 256,256,256, pixel 1.06,
shown at level 0.0336, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 10 as #5.11, grid size 256,256,256, pixel 1.06,
shown at level 0.0243, step 1, values float32
Log from Mon May 9 14:52:49 2022UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open C:/Users/jason431/Downloads/drive-download-20220509T213532Z-001.zip
Unrecognized file suffix '.zip'
> open C:/Users/jason431/Downloads/drive-
> download-20220509T213532Z-001/RESC-B0_3.4A_0910.mrc
> C:/Users/jason431/Downloads/drive-
> download-20220509T213532Z-001/RESC-B1_3.4A_0910.mrc
> C:/Users/jason431/Downloads/drive-
> download-20220509T213532Z-001/RESC-B2_3.4A_0910.mrc
Opened RESC-B0_3.4A_0910.mrc as #1.1, grid size 256,256,256, pixel 1.06, shown
at level 0.0142, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc as #1.2, grid size 256,256,256, pixel 1.06, shown
at level 0.0171, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc as #1.3, grid size 256,256,256, pixel 1.06, shown
at level 0.0243, step 1, values float32
> surface dust #1.1 size 10.6
> surface dust #1.2 size 10.6
> surface dust #1.3 size 10.6
> hide #!1.2 models
> hide #!1.3 models
> hide #!1.1 models
> show #!1.2 models
> hide #!1.2 models
> show #!1.3 models
> open C:/Users/jason431/Downloads/RESCs-B_RNA-coot-7-chimerax.pdb
Chain information for RESCs-B_RNA-coot-7-chimerax.pdb #2
---
Chain | Description
0 | No description available
12 | No description available
4 | No description available
5 | No description available
6 | No description available
7 | No description available
8 | No description available
9 | No description available
g | No description available
m | No description available
> hide atoms
> show cartoons
> dssp
> hide #!1.3 models
> set bgColor white
> select /0
3220 atoms, 3268 bonds, 2 pseudobonds, 406 residues, 2 models selected
> color (#!2 & sel) #8bc163ff
> color #2/7 #3C3B3D
> color #2/8 #AD93E6
> color #2/9 #7DB1B1
> color #2/2 #EC87C0
> color #2/12 #EC87C0
> color #2/4 #F6BA59
> color #2/m #ff00ff
> color #2/g #ff0000
> select clear
> show #!1.3 models
> show #!1.2 models
> show #!1.1 models
> ui tool show "Surface Color"
> ui tool show "Color Zone"
> hide #!1.2 models
> hide #!1.3 models
> color zone #1.1 near #2 distance 20
> hide #!1.1 models
> color #2/5 #FC6E51
> color #2/6 #5D9CEC
> show #!1.1 models
> color zone #1.1 near #2 distance 20
> volume splitbyzone #1.1
Opened RESC-B0_3.4A_0910.mrc 0 as #3.1, grid size 256,256,256, pixel 1.06,
shown at level 0.0142, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 1 as #3.2, grid size 256,256,256, pixel 1.06,
shown at level 0.0142, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 2 as #3.3, grid size 256,256,256, pixel 1.06,
shown at level 0.0142, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 3 as #3.4, grid size 256,256,256, pixel 1.06,
shown at level 0.0142, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 4 as #3.5, grid size 256,256,256, pixel 1.06,
shown at level 0.0142, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 5 as #3.6, grid size 256,256,256, pixel 1.06,
shown at level 0.0142, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 6 as #3.7, grid size 256,256,256, pixel 1.06,
shown at level 0.0142, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 7 as #3.8, grid size 256,256,256, pixel 1.06,
shown at level 0.0142, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 8 as #3.9, grid size 256,256,256, pixel 1.06,
shown at level 0.0142, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 9 as #3.10, grid size 256,256,256, pixel 1.06,
shown at level 0.0142, step 1, values float32
Opened RESC-B0_3.4A_0910.mrc 10 as #3.11, grid size 256,256,256, pixel 1.06,
shown at level 0.0142, step 1, values float32
> color zone #1.2 near #2 distance 20
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!1.2 models
> volume splitbyzone #1.2
Opened RESC-B1_3.4A_0910.mrc 0 as #4.1, grid size 256,256,256, pixel 1.06,
shown at level 0.0171, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 1 as #4.2, grid size 256,256,256, pixel 1.06,
shown at level 0.0171, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 2 as #4.3, grid size 256,256,256, pixel 1.06,
shown at level 0.0171, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 3 as #4.4, grid size 256,256,256, pixel 1.06,
shown at level 0.0171, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 4 as #4.5, grid size 256,256,256, pixel 1.06,
shown at level 0.0171, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 5 as #4.6, grid size 256,256,256, pixel 1.06,
shown at level 0.0171, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 6 as #4.7, grid size 256,256,256, pixel 1.06,
shown at level 0.0171, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 7 as #4.8, grid size 256,256,256, pixel 1.06,
shown at level 0.0171, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 8 as #4.9, grid size 256,256,256, pixel 1.06,
shown at level 0.0171, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 9 as #4.10, grid size 256,256,256, pixel 1.06,
shown at level 0.0171, step 1, values float32
Opened RESC-B1_3.4A_0910.mrc 10 as #4.11, grid size 256,256,256, pixel 1.06,
shown at level 0.0171, step 1, values float32
> hide #!2 models
> show #!1.3 models
> show #!2 models
> hide #!4 models
> hide #!2 models
> show #!2 models
> color zone #1.3 near #2 distance 20
> volume splitbyzone #1.3
Opened RESC-B2_3.4A_0910.mrc 0 as #5.1, grid size 256,256,256, pixel 1.06,
shown at level 0.0243, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 1 as #5.2, grid size 256,256,256, pixel 1.06,
shown at level 0.0243, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 2 as #5.3, grid size 256,256,256, pixel 1.06,
shown at level 0.0243, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 3 as #5.4, grid size 256,256,256, pixel 1.06,
shown at level 0.0243, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 4 as #5.5, grid size 256,256,256, pixel 1.06,
shown at level 0.0243, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 5 as #5.6, grid size 256,256,256, pixel 1.06,
shown at level 0.0243, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 6 as #5.7, grid size 256,256,256, pixel 1.06,
shown at level 0.0243, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 7 as #5.8, grid size 256,256,256, pixel 1.06,
shown at level 0.0243, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 8 as #5.9, grid size 256,256,256, pixel 1.06,
shown at level 0.0243, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 9 as #5.10, grid size 256,256,256, pixel 1.06,
shown at level 0.0243, step 1, values float32
Opened RESC-B2_3.4A_0910.mrc 10 as #5.11, grid size 256,256,256, pixel 1.06,
shown at level 0.0243, step 1, values float32
> surface dust #5.1 size 10.6
> surface dust #5.2 size 10.6
> surface dust #5.3 size 10.6
> surface dust #5.4 size 10.6
> surface dust #5.5 size 10.6
> surface dust #5.6 size 10.6
> surface dust #5.7 size 10.6
> surface dust #5.8 size 10.6
> surface dust #5.9 size 10.6
> surface dust #5.10 size 10.6
> surface dust #5.11 size 10.6
> surface dust #5.1 size 10.6
> surface dust #5.2 size 10.6
> surface dust #5.3 size 10.6
> surface dust #5.4 size 10.6
> surface dust #5.5 size 10.6
> surface dust #5.6 size 10.6
> surface dust #5.7 size 10.6
> surface dust #5.8 size 10.6
> surface dust #5.9 size 10.6
> surface dust #5.10 size 10.6
> surface dust #5.11 size 10.6
> show #!4 models
> show #!3 models
> surface dust #3.1 size 10.6
> surface dust #3.2 size 10.6
> surface dust #3.3 size 10.6
> surface dust #3.4 size 10.6
> surface dust #3.5 size 10.6
> surface dust #3.6 size 10.6
> surface dust #3.7 size 10.6
> surface dust #3.8 size 10.6
> surface dust #3.9 size 10.6
> surface dust #3.10 size 10.6
> surface dust #3.11 size 10.6
> surface dust #4.1 size 10.6
> surface dust #4.2 size 10.6
> surface dust #4.3 size 10.6
> surface dust #4.4 size 10.6
> surface dust #4.5 size 10.6
> surface dust #4.6 size 10.6
> surface dust #4.7 size 10.6
> surface dust #4.8 size 10.6
> surface dust #4.9 size 10.6
> surface dust #4.10 size 10.6
> surface dust #4.11 size 10.6
> surface dust #5.1 size 10.6
> surface dust #5.2 size 10.6
> surface dust #5.3 size 10.6
> surface dust #5.4 size 10.6
> surface dust #5.5 size 10.6
> surface dust #5.6 size 10.6
> surface dust #5.7 size 10.6
> surface dust #5.8 size 10.6
> surface dust #5.9 size 10.6
> surface dust #5.10 size 10.6
> surface dust #5.11 size 10.6
> hide #!5 models
> hide #!4 models
> hide #!3 models
> show #!5 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!5 models
> hide #!3.1 models
> hide #!3.2 models
> show #!3.2 models
> hide #!3 models
> show #!3.1 models
> hide #!3.1 models
> hide #!3.2 models
> hide #!3.3 models
> hide #!3.4 models
> hide #!3.5 models
> hide #!3-5#!3.1-11#!4.1-11#!5.1-11 target m
> show #!5.1 models
> hide #!5.1 models
> show #!5.2 models
> volume #5.2 level 0.02427
> surface dust #5.2 size 10.6
> volume #5.2 level 0.0255
> show #!4.2 models
> volume #4.2 level 0.01522
> volume #4.2 level 0.01832
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> show #!5.3 models
> volume #5.3 level 0.02682
> hide #!2 models
> volume #4.3 level 0.01617
> volume #3.3 level 0.01334
> volume #3.3 level 0.01312
> volume #3.3 level 0.01505
> volume #3.3 level 0.01446
> volume #4.3 level 0.018
> show #!2 models
> volume #4.3 level 0.01777
> show #!5.4 models
> volume #5.4 level 0.03412
> hide #!2 models
> show #!2 models
> hide #!2 models
> volume #5.5 level 0.0361
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> volume #5.6 level 0.03243
> show #!2 models
> volume #5.6 level 0.03152
> volume #4.6 level 0.01785
> volume #4.6 level 0.01836
> volume #4.6 level 0.01862
> volume #4.6 level 0.01888
> volume #4.6 level 0.02016
> volume #4.6 level 0.02144
> volume #4.6 level 0.02169
> volume #4.6 level 0.02272
> volume #4.6 level 0.02349
> volume #4.6 level 0.024
> volume #4.6 level 0.02426
> volume #4.6 level 0.02477
> volume #4.6 level 0.02503
> volume #4.6 level 0.02579
> volume #4.6 level 0.02605
> volume #4.6 level 0.02682
> volume #4.6 level 0.02708
> volume #4.6 level 0.02759
> volume #4.6 level 0.02784
> volume #4.6 level 0.0281
> volume #4.6 level 0.02836
> volume #4.6 level 0.02913
> volume #4.6 level 0.03066
> volume #4.6 level 0.03092
> volume #4.6 level 0.03169
> volume #4.6 level 0.03195
> volume #4.6 level 0.03246
> volume #4.6 level 0.03476
> volume #4.6 level 0.03502
> volume #4.6 level 0.03553
> volume #4.6 level 0.03579
> volume #4.6 level 0.03605
> volume #4.6 level 0.0363
> volume #4.6 level 0.03656
> volume #4.6 level 0.03681
> volume #4.6 level 0.03861
> volume #4.6 level 0.03886
> volume #4.6 level 0.04015
> volume #4.6 level 0.04091
> volume #4.6 level 0.04143
> volume #4.6 level 0.04194
> volume #4.6 level 0.0422
> volume #4.6 level 0.04168
> volume #4.6 level 0.03963
> volume #4.6 level 0.03938
> volume #4.6 level 0.03912
> volume #4.6 level 0.03861
> volume #4.6 level 0.03758
> volume #4.6 level 0.03733
> volume #4.6 level 0.03707
> volume #4.6 level 0.03681
> volume #4.6 level 0.0363
> volume #4.6 level 0.03605
> volume #4.6 level 0.03579
> volume #4.6 level 0.03553
> volume #4.6 level 0.03528
> volume #4.6 level 0.03502
> volume #4.6 level 0.03476
> volume #4.6 level 0.03425
> volume #4.6 level 0.034
> volume #4.6 level 0.03271
> volume #4.6 level 0.03246
> volume #4.6 level 0.0322
> volume #4.6 level 0.03195
> volume #4.6 level 0.03169
> volume #4.6 level 0.03143
> volume #4.6 level 0.03118
> volume #4.6 level 0.03143
> volume #4.6 level 0.03195
> volume #4.6 level 0.0322
> volume #4.6 level 0.03246
> volume #4.6 level 0.03271
> volume #4.6 level 0.03297
> volume #4.6 level 0.03271
> volume #4.6 level 0.03246
> volume #4.6 level 0.0322
> volume #4.6 level 0.03169
> volume #4.6 level 0.03118
> volume #4.6 level 0.03092
> volume #4.6 level 0.03066
> volume #4.6 level 0.03118
> volume #4.6 level 0.03143
> volume #4.6 level 0.03169
> volume #4.6 level 0.03195
> volume #4.6 level 0.03169
> volume #4.6 level 0.03143
> volume #4.6 level 0.03169
> volume #4.6 level 0.03195
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> volume #5.7 level 0.03215
> show #!2 models
> volume #5.7 level 0.02791
> show #!4.7 models
> hide #!5.7 models
> volume #4.7 level 0.0235
> show #!5.8 models
> volume #5.8 level 0.03086
> volume #5.8 level 0.02318
> volume #4.8 level 0.01945
> volume #3.8 level 0.01447
> show #!3 models
> volume #3.8 level 0.01633
> volume #5.9 level 0.03224
> hide #!2 models
> show #!5.10 models
> hide #!4.3 models
> show #!3.3 models
> volume #3.3 level 0.01483
> volume #5.10 level 0.03364
> show #!2 models
> volume #5.10 level 0.03364
> show #!5.11 models
> volume #5.11 level 0.02427
> volume #3.11 level 0.01277
> save C:/Users/jason431/Desktop/resc-fig1/rescb.cxs includeMaps true
——— End of log from Mon May 9 14:52:49 2022 ———
opened ChimeraX session
> preset cartoons/nucleotides cylinders/stubs
Changed 27042 atom styles
Preset expands to these ChimeraX commands:
show nucleic
hide protein|solvent|H
surf hide
style (protein|nucleic|solvent) & @@draw_mode=0 stick
cartoon
cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20
cartoon style ~(nucleic|strand) x round
cartoon style (nucleic|strand) x rect
cartoon style protein modeh tube rad 2 sides 24 thick 0.6
cartoon style nucleic x round width 1.6 thick 1.6
nucleotides stubs
> struts #2
Created 15833 struts for #2, max length 7, max loop length 30
> hide #6 models
> hide #!3 models
> hide #!4 models
> hide #!5 models
> show atoms
> hide atoms
> select clear
> lighting soft
[Repeated 2 time(s)]
> size #2 pseudobondRadius 0.5
Changed 15839 pseudobond radii
> size #2 pseudobondRadius 0.25
Changed 15839 pseudobond radii
> select clear
> select /6:404
11 atoms, 11 bonds, 7 pseudobonds, 1 residue, 2 models selected
> select /g:55
22 atoms, 24 bonds, 1 residue, 1 model selected
> select up
391 atoms, 435 bonds, 21 residues, 1 model selected
> cartoon style nucleic xsection oval width 1.6 thickness 1.6
> select clear
> cartoon style nucleic #2 slab
Expected a keyword
> cartoon style nucleic #2 tube
Expected a keyword
> nucleotides #2 tube/slab
> select clear
> select /g:56
20 atoms, 21 bonds, 1 residue, 1 model selected
> select add /m:23
40 atoms, 42 bonds, 2 residues, 1 model selected
> select up
1059 atoms, 1187 bonds, 52 residues, 1 model selected
> show sel atoms
> select up
27042 atoms, 27661 bonds, 3350 residues, 1 model selected
> select down
1059 atoms, 1187 bonds, 52 residues, 1 model selected
> select clear
> nucleotides #2 tube/slab
> nucleotides #2 tube/slab shape ellipsoid
> select clear
> save C:/Users/jason431/Desktop/RESCmovie/rescb.cxs includeMaps true
——— End of log from Sat May 28 18:29:42 2022 ———
opened ChimeraX session
> hide atoms
> struts #2
Another pseudobond group is already named 'struts RESCs-B_RNA-
coot-7-chimerax.pdb'
> close #6-7
> struts #2
Created 16503 struts for #2, max length 7, max loop length 30
> close #6
> show atoms
> hide atoms
> cartoon style nucleic thickness 1.6
> cartoon style nucleic thickness 1
> cartoon style nucleic width 2
> cartoon style nucleic width 3
> cartoon style nucleic thickness 1.5
[Repeated 1 time(s)]
> lighting shadows true intensity 0.5
> lighting shadows false
> lighting shadows true
> lighting shadows false
> lighting shadows true
> lighting soft
[Repeated 4 time(s)]
> graphics silhouettes true
> graphics silhouettes false
> hide #!1 models
> show #!3 models
> hide #!2 models
> show #!5 models
> show #!4 models
> hide #!4 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!3.2 models
> show #!5.7 models
> hide #!4.7 models
> show #!4.7 models
> hide #!4.7 models
> show #!4.7 models
> hide #!4.7 models
> show #!4.7 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!2 models
> hide #!3 models
> hide #!4.6 models
> hide #!4.7 models
> hide #!4.2 models
> show #!5.6 models
> hide #!2 models
> show #!2 models
> hide #!5.6 models
> show #!4.6 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> volume #4.6 level 0.02094
> surface dust #4.6 size 10.6
> surface dust #5.4 size 10.6
> surface dust #5.5 size 10.6
> surface dust #5.7 size 10.6
> surface dust #5.9 size 10.6
> surface dust #5.10 size 10.6
> show #!2 models
> show #!3 models
> show #!5.8 models
> hide #!5.8 models
> show #!5.8 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> hide #!5.8 models
> show #!4.8 models
> show #!2 models
> select /9:153
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #2/9:0-153
1174 atoms, 1196 bonds, 153 residues, 1 model selected
> ui tool show "Surface Zone"
> select #2/9:0-160
1225 atoms, 1248 bonds, 160 residues, 1 model selected
> select #2/9:0-170
1302 atoms, 1326 bonds, 170 residues, 1 model selected
> select #2/9:150-2000170
5510 atoms, 5599 bonds, 709 residues, 1 model selected
> surface zone #4.8 nearAtoms #2 distance 5
> surface zone #4.8 nearAtoms sel distance 5
[Repeated 1 time(s)]
> volume zone #4.8 nearAtomns #2/9:150-2000170 range 5 newMap True
Expected a keyword
> volume zone #4.8 nearAtoms #2/9:150-2000170 range 5 newMap true
Opened RESC-B1_3.4A_0910.mrc 7 zone as #6, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
> select clear
> volume zone #3.8 nearAtoms #2/9:0-170 range 5 newMap true
Opened RESC-B0_3.4A_0910.mrc 7 zone as #7, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
> rename #6.1 id #6.8.1
> rename #7.1 id #6.8.2
> close #7
An error occurred in drawing the scene. Redrawing graphics is now stopped to
avoid a continuous stream of error messages. To restart graphics use the
command "graphics restart" after changing the settings that caused the error.
object of type 'NoneType' has no len()
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\updateloop.py", line 73, in draw_new_frame
view.draw(check_for_changes = False)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\view.py", line 165, in draw
self._draw_scene(camera, drawings)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\view.py", line 189, in _draw_scene
highlight_drawings, on_top_drawings) = self._drawings_by_pass(mdraw)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\view.py", line 260, in _drawings_by_pass
d.drawings_for_each_pass(pass_drawings)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 743, in drawings_for_each_pass
d.drawings_for_each_pass(pass_drawings)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 743, in drawings_for_each_pass
d.drawings_for_each_pass(pass_drawings)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 743, in drawings_for_each_pass
d.drawings_for_each_pass(pass_drawings)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 721, in drawings_for_each_pass
if not self.display:
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 365, in get_display
return self._any_displayed_positions and len(self._positions) > 0
TypeError: object of type 'NoneType' has no len()
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 638, in <lambda>
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 537, in
_dispatch_mouse_event
f(MouseEvent(event, modifiers=modifiers))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\mouse_modes\std_modes.py", line 290, in mouse_drag
self._rotate(axis, angle)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\mouse_modes\std_modes.py", line 368, in _rotate
self.view.rotate(saxis, angle, self.models())
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\view.py", line 998, in rotate
center = self.center_of_rotation
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\view.py", line 679, in _get_cofr
cofr = self._compute_center_of_rotation()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\view.py", line 706, in _compute_center_of_rotation
p = self._front_center_cofr()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\view.py", line 765, in _front_center_cofr
b = self.drawing_bounds(allow_drawing_changes = False)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\view.py", line 623, in drawing_bounds
dm.cached_drawing_bounds = b = self.drawing.bounds()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 948, in bounds
dbounds = [d.bounds() for d in self.child_drawings()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 948, in <listcomp>
dbounds = [d.bounds() for d in self.child_drawings()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 948, in bounds
dbounds = [d.bounds() for d in self.child_drawings()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 948, in <listcomp>
dbounds = [d.bounds() for d in self.child_drawings()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 948, in bounds
dbounds = [d.bounds() for d in self.child_drawings()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 949, in <listcomp>
if d.display and not d.skip_bounds]
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 365, in get_display
return self._any_displayed_positions and len(self._positions) > 0
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 365, in get_display
return self._any_displayed_positions and len(self._positions) > 0
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\updateloop.py", line 140, in _redraw_timer_callback
self.session.ui.mouse_modes.mouse_pause_tracking()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 493, in
mouse_pause_tracking
self._mouse_pause()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause
m.pause(self._mouse_pause_position)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\mouse_modes\std_modes.py", line 738, in pause
p = self.view.picked_object(x, y)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\view.py", line 798, in picked_object
xyz1, xyz2 = self.clip_plane_points(win_x, win_y)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\view.py", line 956, in clip_plane_points
near, far = self.near_far_distances(c, view_num, include_clipping = False)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\view.py", line 916, in near_far_distances
near, far = self._near_far_bounds(cp, vd)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\view.py", line 929, in _near_far_bounds
b = self.drawing_bounds(allow_drawing_changes = False)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\view.py", line 623, in drawing_bounds
dm.cached_drawing_bounds = b = self.drawing.bounds()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 948, in bounds
dbounds = [d.bounds() for d in self.child_drawings()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 948, in <listcomp>
dbounds = [d.bounds() for d in self.child_drawings()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 948, in bounds
dbounds = [d.bounds() for d in self.child_drawings()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 948, in <listcomp>
dbounds = [d.bounds() for d in self.child_drawings()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 948, in bounds
dbounds = [d.bounds() for d in self.child_drawings()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 949, in <listcomp>
if d.display and not d.skip_bounds]
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 365, in get_display
return self._any_displayed_positions and len(self._positions) > 0
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 365, in get_display
return self._any_displayed_positions and len(self._positions) > 0
See log for complete Python traceback.
> close #6
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\updateloop.py", line 140, in _redraw_timer_callback
self.session.ui.mouse_modes.mouse_pause_tracking()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 493, in
mouse_pause_tracking
self._mouse_pause()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause
m.pause(self._mouse_pause_position)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\mouse_modes\std_modes.py", line 738, in pause
p = self.view.picked_object(x, y)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\view.py", line 798, in picked_object
xyz1, xyz2 = self.clip_plane_points(win_x, win_y)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\view.py", line 956, in clip_plane_points
near, far = self.near_far_distances(c, view_num, include_clipping = False)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\view.py", line 916, in near_far_distances
near, far = self._near_far_bounds(cp, vd)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\view.py", line 929, in _near_far_bounds
b = self.drawing_bounds(allow_drawing_changes = False)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\view.py", line 623, in drawing_bounds
dm.cached_drawing_bounds = b = self.drawing.bounds()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 948, in bounds
dbounds = [d.bounds() for d in self.child_drawings()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 948, in <listcomp>
dbounds = [d.bounds() for d in self.child_drawings()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 948, in bounds
dbounds = [d.bounds() for d in self.child_drawings()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 948, in <listcomp>
dbounds = [d.bounds() for d in self.child_drawings()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 948, in bounds
dbounds = [d.bounds() for d in self.child_drawings()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 949, in <listcomp>
if d.display and not d.skip_bounds]
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 365, in get_display
return self._any_displayed_positions and len(self._positions) > 0
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 365, in get_display
return self._any_displayed_positions and len(self._positions) > 0
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 638, in <lambda>
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 537, in
_dispatch_mouse_event
f(MouseEvent(event, modifiers=modifiers))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\mouse_modes\std_modes.py", line 290, in mouse_drag
self._rotate(axis, angle)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\mouse_modes\std_modes.py", line 368, in _rotate
self.view.rotate(saxis, angle, self.models())
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\view.py", line 998, in rotate
center = self.center_of_rotation
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\view.py", line 679, in _get_cofr
cofr = self._compute_center_of_rotation()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\view.py", line 706, in _compute_center_of_rotation
p = self._front_center_cofr()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\view.py", line 765, in _front_center_cofr
b = self.drawing_bounds(allow_drawing_changes = False)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\view.py", line 623, in drawing_bounds
dm.cached_drawing_bounds = b = self.drawing.bounds()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 948, in bounds
dbounds = [d.bounds() for d in self.child_drawings()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 948, in <listcomp>
dbounds = [d.bounds() for d in self.child_drawings()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 948, in bounds
dbounds = [d.bounds() for d in self.child_drawings()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 948, in <listcomp>
dbounds = [d.bounds() for d in self.child_drawings()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 948, in bounds
dbounds = [d.bounds() for d in self.child_drawings()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 949, in <listcomp>
if d.display and not d.skip_bounds]
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 365, in get_display
return self._any_displayed_positions and len(self._positions) > 0
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 365, in get_display
return self._any_displayed_positions and len(self._positions) > 0
See log for complete Python traceback.
> close #6
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\updateloop.py", line 140, in _redraw_timer_callback
self.session.ui.mouse_modes.mouse_pause_tracking()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 493, in
mouse_pause_tracking
self._mouse_pause()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause
m.pause(self._mouse_pause_position)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\mouse_modes\std_modes.py", line 738, in pause
p = self.view.picked_object(x, y)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\view.py", line 798, in picked_object
xyz1, xyz2 = self.clip_plane_points(win_x, win_y)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\view.py", line 956, in clip_plane_points
near, far = self.near_far_distances(c, view_num, include_clipping = False)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\view.py", line 916, in near_far_distances
near, far = self._near_far_bounds(cp, vd)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\view.py", line 929, in _near_far_bounds
b = self.drawing_bounds(allow_drawing_changes = False)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\view.py", line 623, in drawing_bounds
dm.cached_drawing_bounds = b = self.drawing.bounds()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 948, in bounds
dbounds = [d.bounds() for d in self.child_drawings()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 948, in <listcomp>
dbounds = [d.bounds() for d in self.child_drawings()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 948, in bounds
dbounds = [d.bounds() for d in self.child_drawings()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 948, in <listcomp>
dbounds = [d.bounds() for d in self.child_drawings()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 948, in bounds
dbounds = [d.bounds() for d in self.child_drawings()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 949, in <listcomp>
if d.display and not d.skip_bounds]
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 365, in get_display
return self._any_displayed_positions and len(self._positions) > 0
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 365, in get_display
return self._any_displayed_positions and len(self._positions) > 0
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\updateloop.py", line 140, in _redraw_timer_callback
self.session.ui.mouse_modes.mouse_pause_tracking()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 493, in
mouse_pause_tracking
self._mouse_pause()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause
m.pause(self._mouse_pause_position)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\mouse_modes\std_modes.py", line 738, in pause
p = self.view.picked_object(x, y)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\view.py", line 798, in picked_object
xyz1, xyz2 = self.clip_plane_points(win_x, win_y)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\view.py", line 956, in clip_plane_points
near, far = self.near_far_distances(c, view_num, include_clipping = False)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\view.py", line 916, in near_far_distances
near, far = self._near_far_bounds(cp, vd)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\view.py", line 929, in _near_far_bounds
b = self.drawing_bounds(allow_drawing_changes = False)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\view.py", line 623, in drawing_bounds
dm.cached_drawing_bounds = b = self.drawing.bounds()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 948, in bounds
dbounds = [d.bounds() for d in self.child_drawings()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 948, in <listcomp>
dbounds = [d.bounds() for d in self.child_drawings()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 948, in bounds
dbounds = [d.bounds() for d in self.child_drawings()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 948, in <listcomp>
dbounds = [d.bounds() for d in self.child_drawings()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 948, in bounds
dbounds = [d.bounds() for d in self.child_drawings()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 949, in <listcomp>
if d.display and not d.skip_bounds]
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 365, in get_display
return self._any_displayed_positions and len(self._positions) > 0
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\graphics\drawing.py", line 365, in get_display
return self._any_displayed_positions and len(self._positions) > 0
See log for complete Python traceback.
> save C:/Users/jason431/Desktop/RESCmovie/rescb-2.cxs includeMaps true
——— End of log from Sat May 28 18:44:29 2022 ———
opened ChimeraX session
> hide #!3 models
> hide #!4 models
> hide #!5 models
> hide #!6 models
> show #!6 models
> close #6
> show #!5 models
> show #!4 models
> hide #!4 models
> show #!4 models
> show #!3 models
> hide #!3 models
> show #!3 models
> volume zone #4.8 nearAtoms #2/9:150-2000170 range 5 newMap true
Opened RESC-B1_3.4A_0910.mrc 7 zone as #6, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
> volume zone #3.8 nearAtoms #2/9:0-170 range 5 newMap true
Opened RESC-B0_3.4A_0910.mrc 7 zone as #7, grid size 256,256,256, pixel 1.06,
shown at step 1, values float32
> show #!5.11 models
> hide #!5.11 models
> show #!4.11 models
> hide #!2 models
> show #!2 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> hide #!4.11 models
> show #!4.11 models
> hide #!4.11 models
> show #!3.11 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> save C:/Users/jason431/Desktop/RESCmovie/rescb-3.cxs includeMaps true
> close #3.1
> close #3.4-10
> close #4.1-5
> close #4.7-11
> color #6 #7db1b1 models transparency 0
> color #7 #7db1b1 models transparency 0
> close #5.1-3
> close #5.6
> close #5.8
> close #5.11
> close #1
> hide #!3.2 models
> hide #!3.3 models
> hide #!3.11 models
> hide #!4.6 models
> hide #!5 models
> hide #!5.4 models
> hide #!5.5 models
> hide #!5.7 models
> hide #!5.9 models
> hide #!5.10 models
> hide #!6 models
> hide #!7 models
> show #!3.2 models
> volume #3.2 level 0.01576
> volume #3.2 level 0.0134
> show #!2 models
> hide #!3 models
> show #!3.3 models
> hide #!3 models
> show #!3 models
> hide #!2 models
> volume #3.3 level 0.01228
> show #!2 models
> hide #!2 models
> show #!3.11 models
> show #!2 models
> volume #3.11 level 0.01233
> select clear
> surface dust #3.2 size 10.6
> surface dust #3.3 size 10.6
> surface dust #3.11 size 10.6
> volume #3.11 level 0.01246
> surface dust #3.2 size 10.6
> surface dust #3.3 size 10.6
> surface dust #3.11 size 10.6
> surface dust #3.2 size 10.6
> surface dust #3.3 size 10.6
> surface dust #3.11 size 10.6
> surface dust #3.11 size 20
> surface dust #3.11 size 15
> surface dust #3.11 size 12
> surface dust #3.11 size 13
> surface dust #3.11 size 14
> surface dust #3.11 size 15
> select clear
> volume #3.11 level 0.01227
> volume #3.11 level 0.01233
> surface dust #3.11 size 16
> select clear
[Repeated 1 time(s)]
> show #!4.6 models
> hide #!2 models
> volume #4.6 level 0.02556
> show #!2 models
> volume #5.4 level 0.03782
> show #!5 models
> volume #5.4 level 0.02249
> surface dust #3.2 size 10.6
> surface dust #3.3 size 10.6
> surface dust #3.11 size 10.6
> surface dust #4.6 size 10.6
> surface dust #5.4 size 10.6
> volume #5.4 level 0.02725
> hide #!2 models
> volume #5.4 level 0.01826
> volume #5.4 level 0.03095
> show #!2 models
> hide #!2 models
> show #!5.5 models
> volume #5.5 level 0.03252
> volume #5.7 level 0.02739
> volume #5.9 level 0.02908
> volume #5.10 level 0.03422
> surface dust #3.2 size 10.6
> surface dust #3.3 size 10.6
> surface dust #3.11 size 10.6
> surface dust #4.6 size 10.6
> surface dust #5.4 size 10.6
> surface dust #5.5 size 10.6
> surface dust #5.7 size 10.6
> surface dust #5.9 size 10.6
> surface dust #5.10 size 10.6
> surface dust #6 size 10.6
> select clear
> surface dust #3.2 size 10.6
> surface dust #3.3 size 10.6
> surface dust #3.11 size 10.6
> surface dust #4.6 size 10.6
> surface dust #5.4 size 10.6
> surface dust #5.5 size 10.6
> surface dust #5.7 size 10.6
> surface dust #5.9 size 10.6
> surface dust #5.10 size 10.6
> surface dust #6 size 10.6
> volume #6 level 0.02123
> show #!2 models
> volume #7 level 0.01663
> volume #7 level 0.01231
> volume #7 level 0.01346
> select clear
> surface dust #3.2 size 10.6
> surface dust #3.3 size 10.6
> surface dust #3.11 size 10.6
> surface dust #4.6 size 10.6
> surface dust #5.4 size 10.6
> surface dust #5.5 size 10.6
> surface dust #5.7 size 10.6
> surface dust #5.9 size 10.6
> surface dust #5.10 size 10.6
> surface dust #6 size 10.6
> surface dust #7 size 10.6
> volume #7 level 0.01301
> select clear
> hide #!2 models
> show #!2 models
> hide #!2 models
> volume #6 level 0.0164
> select clear
> hide #!5.4 models
> show #!5.4 models
> volume #5.4 level 0.0246
> volume #7 level 0.01377
> save C:/Users/jason431/Desktop/RESCmovie/rescb-4.cxs includeMaps true
> view orient
[Repeated 1 time(s)]
> view turn x 90
Expected an objects specifier or a view name or a keyword
> turn x 90
> turn x 90 coordinateSystem #2 center #2
> turn y 90 coordinateSystem #2 center #2
> turn y -90 coordinateSystem #2 center #2
> turn z 90 coordinateSystem #2 center #2
[Repeated 2 time(s)]
> view name one
> turn y 2 180
> ui tool show "Side View"
> turn y 90
[Repeated 3 time(s)]
> view name one
> volume #3.11 level 0.0124
> surface dust #3.2 size 10.6
> surface dust #3.3 size 10.6
> surface dust #3.11 size 10.6
> surface dust #4.6 size 10.6
> surface dust #5.4 size 10.6
> surface dust #5.5 size 10.6
> surface dust #5.7 size 10.6
> surface dust #5.9 size 10.6
> surface dust #5.10 size 10.6
> surface dust #6 size 10.6
> surface dust #7 size 10.6
> surface dust #5.4 size 12
> surface dust #5.4 size 13
> surface dust #5.4 size 20
> surface dust #5.4 size 30
> surface dust #5.4 size 20
> volume #5.4 level 0.02249
> surface dust #5.4 size 40
> surface dust #5.4 size 100
> surface dust #5.4 size 50
> select clear
> volume #5.5 level 0.033
> volume #5.5 level 0.032
> volume #5.5 level 0.031
> volume #5.5 level 0.03
> view one
> turn y 2 180
> save C:/Users/jason431/Desktop/RESCmovie/rescb-5.cxs includeMaps true
——— End of log from Sat May 28 19:03:27 2022 ———
opened ChimeraX session
> open C:/Users/jason431/Desktop/RESCBs-B_RNA-coot-7-chimerax.pdb
Chain information for RESCBs-B_RNA-coot-7-chimerax.pdb #1
---
Chain | Description
0 | No description available
12 | No description available
4 | No description available
5 | No description available
6 | No description available
7 | No description available
8 | No description available
9 | No description available
g | No description available
m | No description available
> hide #!1 atoms
> show #!1 cartoons
> color #1 black transparency 0
> dssp
> hide #!3 models
> hide #!4 models
> hide #!5 models
> hide #!6 models
> hide #!7 models
> split #1 chains
Split RESCBs-B_RNA-coot-7-chimerax.pdb (#1) into 10 models
Chain information for RESCBs-B_RNA-coot-7-chimerax.pdb 0 #1.1
---
Chain | Description
0 | No description available
Chain information for RESCBs-B_RNA-coot-7-chimerax.pdb 12 #1.2
---
Chain | Description
12 | No description available
Chain information for RESCBs-B_RNA-coot-7-chimerax.pdb 4 #1.3
---
Chain | Description
4 | No description available
Chain information for RESCBs-B_RNA-coot-7-chimerax.pdb 5 #1.4
---
Chain | Description
5 | No description available
Chain information for RESCBs-B_RNA-coot-7-chimerax.pdb 6 #1.5
---
Chain | Description
6 | No description available
Chain information for RESCBs-B_RNA-coot-7-chimerax.pdb 7 #1.6
---
Chain | Description
7 | No description available
Chain information for RESCBs-B_RNA-coot-7-chimerax.pdb 8 #1.7
---
Chain | Description
8 | No description available
Chain information for RESCBs-B_RNA-coot-7-chimerax.pdb 9 #1.8
---
Chain | Description
9 | No description available
Chain information for RESCBs-B_RNA-coot-7-chimerax.pdb g #1.9
---
Chain | Description
g | No description available
Chain information for RESCBs-B_RNA-coot-7-chimerax.pdb m #1.10
---
Chain | Description
m | No description available
> hide #1.9 models
> show #1.9 models
> tile #1.1-8
8 models tiled
> close #1.9#1.10
> combine #1.1-1.8 close true modelId #1
No structures specified
> combine #1.1-8 close true modelId #1
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 297, in execute
cmd.run(cmd_text)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2856, in run
result = ci.function(session, **kw_args)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\cmd.py", line 64, in combine_cmd
session.models.add([combination])
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\models.py", line 654, in add
p = self._parent_for_added_model(model, parent, root_model = root_model)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\models.py", line 721, in _parent_for_added_model
raise ValueError('Tried to add model %s with the same id as another model %s'
ValueError: Tried to add model combination #1 with the same id as another
model RESCBs-B_RNA-coot-7-chimerax.pdb #1
ValueError: Tried to add model combination #1 with the same id as another
model RESCBs-B_RNA-coot-7-chimerax.pdb #1
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\models.py", line 721, in _parent_for_added_model
raise ValueError('Tried to add model %s with the same id as another model %s'
See log for complete Python traceback.
> close #1
> open C:/Users/jason431/Desktop/RESCBs-B_RNA-coot-7-chimerax.pdb
Chain information for RESCBs-B_RNA-coot-7-chimerax.pdb #1
---
Chain | Description
0 | No description available
12 | No description available
4 | No description available
5 | No description available
6 | No description available
7 | No description available
8 | No description available
9 | No description available
g | No description available
m | No description available
> split #1 chains
Split RESCBs-B_RNA-coot-7-chimerax.pdb (#1) into 10 models
Chain information for RESCBs-B_RNA-coot-7-chimerax.pdb 0 #1.1
---
Chain | Description
0 | No description available
Chain information for RESCBs-B_RNA-coot-7-chimerax.pdb 12 #1.2
---
Chain | Description
12 | No description available
Chain information for RESCBs-B_RNA-coot-7-chimerax.pdb 4 #1.3
---
Chain | Description
4 | No description available
Chain information for RESCBs-B_RNA-coot-7-chimerax.pdb 5 #1.4
---
Chain | Description
5 | No description available
Chain information for RESCBs-B_RNA-coot-7-chimerax.pdb 6 #1.5
---
Chain | Description
6 | No description available
Chain information for RESCBs-B_RNA-coot-7-chimerax.pdb 7 #1.6
---
Chain | Description
7 | No description available
Chain information for RESCBs-B_RNA-coot-7-chimerax.pdb 8 #1.7
---
Chain | Description
8 | No description available
Chain information for RESCBs-B_RNA-coot-7-chimerax.pdb 9 #1.8
---
Chain | Description
9 | No description available
Chain information for RESCBs-B_RNA-coot-7-chimerax.pdb g #1.9
---
Chain | Description
g | No description available
Chain information for RESCBs-B_RNA-coot-7-chimerax.pdb m #1.10
---
Chain | Description
m | No description available
> tile #1.1-8
8 models tiled
> combine #1.1-8 close true modelId #8
> close #1
> hide #!8 atoms
> show #!8 cartoons
> dssp
> save C:/Users/jason431/Desktop/RESCmovie/rescb-6.cxs includeMaps true
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "begin save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
——— End of log from Sat May 28 19:30:35 2022 ———
opened ChimeraX session
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> close #8
> open C:/Users/jason431/Desktop/RESCBs-B_RNA-coot-7-chimerax.pdb
Chain information for RESCBs-B_RNA-coot-7-chimerax.pdb #1
---
Chain | Description
0 | No description available
12 | No description available
4 | No description available
5 | No description available
6 | No description available
7 | No description available
8 | No description available
9 | No description available
g | No description available
m | No description available
> split #1 chains
Split RESCBs-B_RNA-coot-7-chimerax.pdb (#1) into 10 models
Chain information for RESCBs-B_RNA-coot-7-chimerax.pdb 0 #1.1
---
Chain | Description
0 | No description available
Chain information for RESCBs-B_RNA-coot-7-chimerax.pdb 12 #1.2
---
Chain | Description
12 | No description available
Chain information for RESCBs-B_RNA-coot-7-chimerax.pdb 4 #1.3
---
Chain | Description
4 | No description available
Chain information for RESCBs-B_RNA-coot-7-chimerax.pdb 5 #1.4
---
Chain | Description
5 | No description available
Chain information for RESCBs-B_RNA-coot-7-chimerax.pdb 6 #1.5
---
Chain | Description
6 | No description available
Chain information for RESCBs-B_RNA-coot-7-chimerax.pdb 7 #1.6
---
Chain | Description
7 | No description available
Chain information for RESCBs-B_RNA-coot-7-chimerax.pdb 8 #1.7
---
Chain | Description
8 | No description available
Chain information for RESCBs-B_RNA-coot-7-chimerax.pdb 9 #1.8
---
Chain | Description
9 | No description available
Chain information for RESCBs-B_RNA-coot-7-chimerax.pdb g #1.9
---
Chain | Description
g | No description available
Chain information for RESCBs-B_RNA-coot-7-chimerax.pdb m #1.10
---
Chain | Description
m | No description available
> tile #1.1-8
8 models tiled
> select #1
27042 atoms, 27661 bonds, 6 pseudobonds, 3350 residues, 15 models selected
> ~select #1
Nothing selected
> combine #1.1-1.10 close true modelId #8
No structures specified
> combine #1.1-10 close true modelId #8
> close #1
> show #!2 models
> move y -10 models #2
[Repeated 5 time(s)]
> move x 10 models #2
[Repeated 9 time(s)]
> view one
> move y -10 models #2
[Repeated 5 time(s)]
> view one
> hide #!8 models
> save C:/Users/jason431/Desktop/RESCmovie/rescb-7.cxs includeMaps true
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "begin save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
——— End of log from Sat May 28 19:36:53 2022 ———
opened ChimeraX session
> show #!8 models
> move y -10 models #2
[Repeated 5 time(s)]
> move x 10 models #2
[Repeated 10 time(s)]
> view name two
> hide atoms
> show cartoons
> dssp
> morph #2,8 frames 20 same true
Computed 21 frame morph #1
> coordset #1 1,21
> close #1
> show #!2 models
> show #!8 models
> hide #!8 models
> show #!8 models
> hide #!8 models
> undo
> hide #!8 models
> view one
> show #!8 models
> hide #!8 models
> show #!8 models
> hide #!8 models
> view two
> select #2/0/4-9/12
25983 atoms, 26474 bonds, 5 pseudobonds, 3298 residues, 2 models selected
> select #2/4-9
19640 atoms, 20028 bonds, 1 pseudobond, 2499 residues, 2 models selected
> transparency #2/4-9 50 target r
> transparency #2/4-9 0 target r
> select clear
> save C:/Users/jason431/Desktop/RESCmovie/rescb-8.cxs includeMaps true
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "begin save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "end save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> movie record
> view one
> turn y 2 180
> wait
> crossfade 25
> show #2 models
> hide #3-7 models
> wait
wait requires a frame count argument unless motion is in progress
> turn y 1 180
> wait
> crossfade 25
> transparency #2/4-9 50 target r
> turn y 1 180
> wait
> fly 10 one two
> set independent
Expected a keyword
> movie stop
> transparency #2/4-9 0 target r
> show #!8 models
> hide #!8 models
> morph #2,8 frames 20 same true play false
Computed 21 frame morph #1
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!2 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> cartoon style protein modeHelix tube radius 2 sides 24
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> view one
> hide #!1 models
> save C:/Users/jason431/Desktop/RESCmovie/rescb-9.cxs includeMaps true
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "begin save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "end save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> movie record
> view one
> turn y 2 180 center #2 coordinateSystem #2
> wait
> crossfade 25
> show #2 models
> hide #3-7 models
> wait
wait requires a frame count argument unless motion is in progress
> turn y 1 180 center #2 coordinateSystem #2
> wait
> crossfade 25
> transparency #2/4-9 50 target r
> turn y 1 180 center #2 coordinateSystem #2
> wait
> transparency #2/4-9 0 target r
> fly 10 one two
> hide #2 models
> show #1 models
> hide #1/g models
> hide #2/m models
> coordset #1
> wait
> turn y 2 180 center #2/4 coordinateSystem #2 models #2/4
> turn y 2 180 center #2/6 coordinateSystem #2 models #2/6
> wait
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4
Movie saved to C:\Users\jason431/Desktop/RESCmovie/movie.mp4
executed movie.cxc
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!2 models
> hide #!2 models
> show #!2 models
> view one
> turn y 2 180 center #2
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> movie record
> view one
> turn y 2 180 center #2
> wait
> crossfade 25
> show #2 models
> hide #3-7 models
> wait
wait requires a frame count argument unless motion is in progress
> turn y 1 180 center #2
> wait
> crossfade 25
> transparency #2/4-9 50 target r
> turn y 1 180 center #2
> wait
> transparency #2/4-9 0 target r
> fly 10 one two
> hide #2 models
> show #1 models
> hide #1/g models
> hide #2/m models
> coordset #1
> wait
> turn y 2 180 center #2/4 models #2/4
> turn y 2 180 center #2/6 models #2/6
> wait
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4
Movie saved to C:\Users\jason431/Desktop/RESCmovie/movie.mp4
executed movie.cxc
> show #!2 models
> view one
> view name one
> turn y 2 180 center #2
> hide #2 models
> show #3-7 models
> select clear
> turn y 2 180 center #2
> transparency #2/4-9 50 target r
> fly 10 one two
> show #!1 models
> show #!8 models
> hide #!8 models
> show #!8 models
> move x 10 #1,8
Expected an integer >= 1 or a keyword
> move #1,8 x 10
Missing or invalid "axis" argument: Axis argument requires 2 atoms, got 54084
atoms
> move x 10 models #1,8
> move x -10 models #1,8
[Repeated 10 time(s)]
> move y 10 models #1,8
[Repeated 6 time(s)]
> view name two
> hide #!8 models
> hide #!3 models
> hide #!4 models
> hide #!5 models
> hide #!6 models
> hide #!7 models
> hide #!1 models
> show #!2 models
> transparency #2/4-9 0 target r
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> movie record
> view one
> turn y 2 180 center #2
> wait
> crossfade 25
> hide #2 models
> show #3-7 models
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 180 center #2
> wait 180
> crossfade 25
> transparency #2/4-9 50 target r
> wait
wait requires a frame count argument unless motion is in progress
> transparency #2/4-9 0 target r
> fly 10 one two
> hide #3-7 models
> show #1 models
> hide #1/g models
> hide #2/m models
> wait
> coordset #1
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 180 center #2/4 models #2/4
> turn y 2 180 center #2/6 models #2/6
> wait
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4
Movie saved to C:\Users\jason431/Desktop/RESCmovie/movie.mp4
executed movie.cxc
> fly 10 one two
fly: Nothing displayed to calculate center of rotation
> show #1 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> show #!8 models
> hide #!8 models
> show #!8 models
> view two
> view one
> view two
> hide #!1 models
> show #!1 models
> view one
> move y 10 models #1,8
[Repeated 6 time(s)]
> move x -10 models #1,8
[Repeated 10 time(s)]
> view name two
> hide #!1 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> hide #!8 models
> show #1 models
> hide #1/g models
> show #1 models
> hide #1/g
> select #1/g
391 atoms, 435 bonds, 21 residues, 1 model selected
> hide #1/g ribbons
> select clear
> show #!2 models
> hide #!2 models
> show #!2 models
> show #!8 models
> view two
> move x -10 models #1,8
> move x 10 models #1,8
[Repeated 2 time(s)]
> move y -10 models #1,8
> move x -10 models #1,8
> view name two
> view one
> view two
> view one
> view two
> view name one
> struts #1
Created 16674 struts for #1, max length 7, max loop length 30
> close #9
> hide atoms
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!1 models
> hide #!1 models
> show #!1 models
> show #!2 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> size #2 pseudobondRadius 0.25
Changed 6 pseudobond radii
> cartoon style nucleic thickness 1.5
> cartoon style nucleic width 3
> select clear
> hide #!1 models
> show #!1 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!8 models
> hide #!1 models
> show #!1 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> hide #!2 models
> show #!2 models
> show #!1 models
> hide #!2 models
> hide #2/m ribbons
> show #2/m ribbons
> show #!2 models
> hide #!1 models
> show #!1 models
> hide #!2 models
> hide #1/m ribbons
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> movie record
> view one
> hide ribbons
> show #3-7 models
> turn y 4 180 center #2
> wait 360
> crossfade 10
> show #2 models
> hide #3-7 models
> wait 180
> crossfade 10
> transparency #2/4-9 50 target r
> wait
wait requires a frame count argument unless motion is in progress
> crossfade 10
> transparency #2/4-9 0 target r
> fly 10 one two
fly: Nothing displayed to calculate center of rotation
> hide #!1 models
> show #!1 models
> hide #!2 models
> show #!2 models
> show #!1-2 cartoons
> hide #!2 models
> show #!2 models
> hide #!1 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> show #!1 models
> hide #!1 models
> hide #!2 models
> show #!1 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> view one
> zoom -2 frames 10
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 297, in execute
cmd.run(cmd_text)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2856, in run
result = ci.function(session, **kw_args)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\std_commands\zoom.py", line 46, in zoom
ff = math.pow(factor, 1/frames)
ValueError: math domain error
ValueError: math domain error
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\std_commands\zoom.py", line 46, in zoom
ff = math.pow(factor, 1/frames)
See log for complete Python traceback.
> zoom -2
> save C:/Users/jason431/Desktop/RESCmovie/rescb-10.cxs includeMaps true
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "begin save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
——— End of log from Sat May 28 20:28:25 2022 ———
opened ChimeraX session
> show #!1-2 cartoons
> view
> view one
> zoom -2
> view one
> zoom 2
> zoom -1
> view one
> zoom -0.1
> zoom -1
[Repeated 6 time(s)]
> zoom 10
[Repeated 1 time(s)]
> zoom -10
[Repeated 8 time(s)]
> zoom 10
> view one
> zoom -10
[Repeated 4 time(s)]
> zoom -1
> view one
> zoom -1
> view one
> view two
> hide #!1 models
> hide #!2 models
> hide #1.1 models
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> movie record
> view one
> hide ribbons
> show #3-7 models
> turn y 4 180 center #2
> wait 360
> crossfade 10
> show #2 models
> hide #3-7 models
> wait 180
> crossfade 10
> transparency #2/4-9 50 target r
> wait
wait requires a frame count argument unless motion is in progress
> crossfade 10
> transparency #2/4-9 0 target r
> fly 10 one two
fly: Nothing displayed to calculate center of rotation
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> movie record
Already recording a movie
> movie stop
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> movie record
> view one
> hide ribbons
> show #3-7 models
> turn y 4 180 center #2
> wait 360
> crossfade 10
> show #2 models
> hide #3-7 models
> wait 180
> crossfade 10
> transparency #2/4-9 50 target r
> wait
wait requires a frame count argument unless motion is in progress
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4
Movie saved to C:\Users\jason431/Desktop/RESCmovie/movie.mp4
executed movie.cxc
> movie stop
No movie being recorded.
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> movie record
> view one
> hide ribbons
> show #3-7 models
> turn y 4 180 center #2
> wait 2
> crossfade 10
> show #2 models
> hide #3-7 models
> wait 3
> crossfade 10
> transparency #2/4-9 50 target r
> wait
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4
Movie saved to C:\Users\jason431/Desktop/RESCmovie/movie.mp4
executed movie.cxc
> movie stop
No movie being recorded.
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> movie record
> view one
> hide ribbons
> show #3-7 models
> turn y 4 180 center #2
> wait 2
> crossfade 10
> show #2 models
> hide #3-7 models
> wait 3
> crossfade 10
> transparency #2/4-9 50 target r
> wait
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4
Movie saved to C:\Users\jason431/Desktop/RESCmovie/movie.mp4
executed movie.cxc
> movie stop
No movie being recorded.
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> movie record
> view one
> hide ribbons
> show #3-7 models
> turn y 4 180 center #2
> wait 360
> crossfade 10
> show #2 models
> hide #3-7 models
> wait 720
> crossfade 10
> transparency #2/4-9 50 target r
> wait
wait requires a frame count argument unless motion is in progress
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4
Movie saved to C:\Users\jason431/Desktop/RESCmovie/movie.mp4
executed movie.cxc
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> movie record
> view one
> hide ribbons
> show #3-7 models
> turn y 2 180 center #2
> wait
> crossfade 10
> show #2 models
> hide #3-7 models
> wait
wait requires a frame count argument unless motion is in progress
> turn y 1 180 center #2
> wait
> crossfade 10
> transparency #2/4-9 50 target r
> wait
wait requires a frame count argument unless motion is in progress
> turn y 1 180 center #2
> wait
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4
Movie saved to C:\Users\jason431/Desktop/RESCmovie/movie.mp4
executed movie.cxc
> select clear
> show #!2 cartoons
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> movie record
> view one
> hide ribbons
> show #3-7 models
> turn y 2 180 center #2
> wait
> crossfade 10
> show #2 models
> hide #3-7 models
> wait
wait requires a frame count argument unless motion is in progress
> turn y 1 180 center #2
> wait
> crossfade 10
> transparency #2/4-9 50 target r
> wait
wait requires a frame count argument unless motion is in progress
> turn y 1 180 center #2
> wait
> transparency #2/4-9 0 target r
> wait
wait requires a frame count argument unless motion is in progress
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4
Movie saved to C:\Users\jason431/Desktop/RESCmovie/movie.mp4
executed movie.cxc
> show #2 models
> show #2 ribbons
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> movie record
> view one
> hide ribbons
> show #3-7 models
> turn y 2 180 center #2
> wait
> crossfade 10
> show #2 ribbons
> hide #3-7 models
> wait
wait requires a frame count argument unless motion is in progress
> turn y 1 180 center #2
> wait
> crossfade 10
> transparency #2/4-9 50 target r
> wait
wait requires a frame count argument unless motion is in progress
> turn y 1 180 center #2
> wait
> transparency #2/4-9 0 target r
> wait
wait requires a frame count argument unless motion is in progress
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4
Movie saved to C:\Users\jason431/Desktop/RESCmovie/movie.mp4
executed movie.cxc
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> movie record
> view one
> hide ribbons
> show #3-7 models
> turn y 4 180 center #2
> wait 360
> crossfade 10
> show #2 ribbons
> hide #3-7 models
> wait 720
> crossfade 10
> transparency #2/4-9 50 target r
> wait
wait requires a frame count argument unless motion is in progress
> turn y 1 180 center #2
> wait
> transparency #2/4-9 0 target r
> wait
wait requires a frame count argument unless motion is in progress
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4
Movie saved to C:\Users\jason431/Desktop/RESCmovie/movie.mp4
executed movie.cxc
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> movie record
> view one
> hide ribbons
> show #3-7 models
> turn y 2 180 center #2
> wait
> show #2 ribbons
> hide #3-7 models
> wait
wait requires a frame count argument unless motion is in progress
> turn y 1 180 center #2
> wait
> transparency #2/4-9 50 target r
> wait
wait requires a frame count argument unless motion is in progress
> turn y 1 180 center #2
> wait
> transparency #2/4-9 0 target r
> wait
wait requires a frame count argument unless motion is in progress
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4
Movie saved to C:\Users\jason431/Desktop/RESCmovie/movie.mp4
executed movie.cxc
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> movie record
> view one
> hide ribbons
> show #3-7 models
> turn y 2 180 center #2
> wait
> show #2 ribbons
> hide #3-7 models
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 90 center #2
> wait
> transparency #2/4-9/0/12 50 target r
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 90 center #2
> wait
> transparency #2/4-9/0/12 0 target r
> wait
wait requires a frame count argument unless motion is in progress
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4
Movie saved to C:\Users\jason431/Desktop/RESCmovie/movie.mp4
executed movie.cxc
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> movie record
> view one
> hide ribbons
> show #3-7 models
> turn y 2 180 center #2
> wait
> crossfade
> show #2 ribbons
> hide #3-7 models
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 90 center #2
> wait
> transparency #2/4-9/0/12 50 target r
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 90 center #2
> wait
> transparency #2/4-9/0/12 0 target r
> wait
wait requires a frame count argument unless motion is in progress
> fly 10 one two
> wait
> hide #2 models
> show #1 models
> hide #1/g ribbons
> hide #1/m ribbons
> wait
wait requires a frame count argument unless motion is in progress
> coordset #1
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 180 center #2/4 models #2/4
> turn y 2 180 center #2/6 models #2/6
> wait
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4
Movie saved to C:\Users\jason431/Desktop/RESCmovie/movie.mp4
executed movie.cxc
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> movie record
> view one
> hide ribbons
> show #3-7 models
> turn y 2 180 center #2
> wait
> movie crossfade
> show #2 ribbons
> hide #3-7 models
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 90 center #2
> wait
> transparency #2/4-9/0/12 50 target r
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 90 center #2
> wait
> transparency #2/4-9/0/12 0 target r
> wait
wait requires a frame count argument unless motion is in progress
> fly 10 one two
fly: Nothing displayed to calculate center of rotation
> show #1 ribbons
> fly 10 one two
> hide ribbons
> show #1 ribbons
> coordset #1
> movie stop
> show #2 ribbons
> hide #!1 models
> hide #1.1 models
> show #2 ribbons
[Repeated 1 time(s)]
> movie stop
Not currently recording
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> movie record
> view one
> hide models
> show #3-7 models
> turn y 2 180 center #2
> wait
> movie crossfade
> show #2 models
> hide #3-7 models
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 90 center #2
> wait
> transparency #2/4-9/0/12 50 target r
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 90 center #2
> wait
> transparency #2/4-9/0/12 0 target r
> wait
wait requires a frame count argument unless motion is in progress
> fly 10 one two
> wait
> show #1 models
> wait
wait requires a frame count argument unless motion is in progress
> hide #2 models
> hide #1/g models
> hide #1/m models
> wait
wait requires a frame count argument unless motion is in progress
> coordset #1
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 180 center #2/4 models #2/4
> turn y 2 180 center #2/6 models #2/6
> wait
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4
Movie saved to C:\Users\jason431/Desktop/RESCmovie/movie.mp4
executed movie.cxc
> show #1 models
> fly 10 one two
[Repeated 19 time(s)]
> hide #!1 models
> show #!1 models
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> movie record
> view one
> hide models
> show #3-7 models
> turn y 2 180 center #2
> wait
> movie crossfade
> show #2 models
> hide #3-7 models
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 90 center #2
> wait
> transparency #2/4-9/0/12 50 target r
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 90 center #2
> wait
> transparency #2/4-9/0/12 0 target r
> wait
wait requires a frame count argument unless motion is in progress
> fly 10 one two
> wait
> show #1 models
> wait
wait requires a frame count argument unless motion is in progress
> hide #2 models
> hide #1/g ribbons
> hide #1/m ribbons
> wait
wait requires a frame count argument unless motion is in progress
> coordset #1
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 180 center #2/4 models #2/4
> turn y 2 180 center #2/6 models #2/6
> wait
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4
Movie saved to C:\Users\jason431/Desktop/RESCmovie/movie.mp4
executed movie.cxc
> hide #!1 models
> show #!1 models
> show #!8 models
> hide #!8 models
> show #!2 models
> hide #!2 models
> turn y 2 180 center #1/4 models #1/4
> show #!8 models
> hide #!8 models
> show #!8 models
> hide #!1 models
> select clear
> show #!8 cartoons
> show #!1 models
> hide #!1 models
> show #!1 models
> turn y 2 180 center #1/8 models #1/8
> save C:/Users/jason431/Desktop/RESCmovie/rescb-11.cxs includeMaps true
> split #1 chains
Split Morph - RESCs-B_RNA-coot-7-chimerax.pdb (#1) into 10 models
Chain information for Morph - RESCs-B_RNA-coot-7-chimerax.pdb 0 #1.1
---
Chain | Description
0 | No description available
Chain information for Morph - RESCs-B_RNA-coot-7-chimerax.pdb 12 #1.2
---
Chain | Description
12 | No description available
Chain information for Morph - RESCs-B_RNA-coot-7-chimerax.pdb 4 #1.3
---
Chain | Description
4 | No description available
Chain information for Morph - RESCs-B_RNA-coot-7-chimerax.pdb 5 #1.4
---
Chain | Description
5 | No description available
Chain information for Morph - RESCs-B_RNA-coot-7-chimerax.pdb 6 #1.5
---
Chain | Description
6 | No description available
Chain information for Morph - RESCs-B_RNA-coot-7-chimerax.pdb 7 #1.6
---
Chain | Description
7 | No description available
Chain information for Morph - RESCs-B_RNA-coot-7-chimerax.pdb 8 #1.7
---
Chain | Description
8 | No description available
Chain information for Morph - RESCs-B_RNA-coot-7-chimerax.pdb 9 #1.8
---
Chain | Description
9 | No description available
Chain information for Morph - RESCs-B_RNA-coot-7-chimerax.pdb g #1.9
---
Chain | Description
g | No description available
Chain information for Morph - RESCs-B_RNA-coot-7-chimerax.pdb m #1.10
---
Chain | Description
m | No description available
> coordset #1
[Repeated 3 time(s)]
> morph #2,8 frames 20 same true
Computed 21 frame morph #9
> coordset #9 1,21
> turn y 2 180 center #1.1 models #1.1
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!9 models
> select clear
[Repeated 1 time(s)]
> cartoon style #1 width 1.5 thickness 0.3
> cartoon style #1 width 3 thickness 0.3
> cartoon style #1 width 3 thickness 1
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> movie record
> view one
> hide models
> show #3-7 models
> turn y 2 180 center #2
> wait
> movie crossfade
> show #2 models
> hide #3-7 models
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 90 center #2
> wait
> transparency #2/4-9/0/12 50 target r
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 90 center #2
> wait
> transparency #2/4-9/0/12 0 target r
> wait
wait requires a frame count argument unless motion is in progress
> fly 10 one two
> wait
> show #9 models
> wait
wait requires a frame count argument unless motion is in progress
> hide #2 models
> hide #9/g ribbons
> hide #9/m ribbons
> wait
wait requires a frame count argument unless motion is in progress
> coordset #9
> wait
wait requires a frame count argument unless motion is in progress
> hide #9 models
> show #1 models
> turn y 2 180 center #1.1 models #1.1
> turn y 2 180 center #1.2 models #1.2
> turn y 2 180 center #1.3 models #1.3
> turn y 2 180 center #1.4 models #1.4
> turn y 2 180 center #1.5 models #1.5
> turn y 2 180 center #1.6 models #1.6
> turn y 2 180 center #1.7 models #1.7
> turn y 2 180 center #1.8 models #1.8
> wait
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4
Movie saved to C:\Users\jason431/Desktop/RESCmovie/movie.mp4
executed movie.cxc
> coordset #9
> show #!9 models
> coordset #9
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> movie record
> view one
> hide models
> show #3-7 models
> turn y 2 180 center #2
> wait
> movie crossfade
> show #2 models
> hide #3-7 models
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 90 center #2
> wait
> movie crossfade
> transparency #2/4-9/0/12 50 target r
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 90 center #2
> wait
> movie crossfade
> transparency #2/4-9/0/12 0 target r
> wait
wait requires a frame count argument unless motion is in progress
> fly 10 one two
> wait
> show #9 models
> wait
wait requires a frame count argument unless motion is in progress
> hide #2 models
> hide #9/g ribbons
> hide #9/m ribbons
> wait
wait requires a frame count argument unless motion is in progress
> coordset #9
> wait
wait requires a frame count argument unless motion is in progress
> hide #9 models
> show #1 models
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 180 center #1.1 models #1.1
> turn y 2 180 center #1.2 models #1.2
> turn y 2 180 center #1.3 models #1.3
> turn y 2 180 center #1.4 models #1.4
> turn y 2 180 center #1.5 models #1.5
> turn y 2 180 center #1.6 models #1.6
> turn y 2 180 center #1.7 models #1.7
> turn y 2 180 center #1.8 models #1.8
> wait
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4
Movie saved to C:\Users\jason431/Desktop/RESCmovie/movie.mp4
executed movie.cxc
> coordset #9
> show #9 models
> hide #!1.1 models
> show #!1.1 models
> hide #!1 models
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> movie record
> view two
> show #9 models
> wait
wait requires a frame count argument unless motion is in progress
> hide #2 models
> hide #9/g ribbons
> hide #9/m ribbons
> wait
wait requires a frame count argument unless motion is in progress
> coordset #9
> wait
wait requires a frame count argument unless motion is in progress
> hide #9 models
> show #1 models
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 180 center #1.1 models #1.1
> turn y 2 180 center #1.2 models #1.2
> turn y 2 180 center #1.3 models #1.3
> turn y 2 180 center #1.4 models #1.4
> turn y 2 180 center #1.5 models #1.5
> turn y 2 180 center #1.6 models #1.6
> turn y 2 180 center #1.7 models #1.7
> turn y 2 180 center #1.8 models #1.8
> wait
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4
Movie saved to C:\Users\jason431/Desktop/RESCmovie/movie.mp4
executed movie.cxc
> hide #!1 models
> show #!9 models
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> movie record
> coordset #9
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4
Movie encoding failed because no images were recorded.
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> movie record
> coordset #9
> wait
wait requires a frame count argument unless motion is in progress
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4
Movie encoding failed because no images were recorded.
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> movie record
> wait
wait requires a frame count argument unless motion is in progress
> coordset #9
> wait
wait requires a frame count argument unless motion is in progress
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4
Movie encoding failed because no images were recorded.
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> movie record
> view one
> hide models
> show #3-7 models
> turn y 2 180 center #2
> wait
> movie crossfade
> show #2 models
> hide #3-7 models
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 90 center #2
> wait
> movie crossfade
> transparency #2/4-9/0/12 50 target r
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 90 center #2
> wait
> movie crossfade
> transparency #2/4-9/0/12 0 target r
> wait
wait requires a frame count argument unless motion is in progress
> fly 10 one two
> wait
> show #9 models
> wait
wait requires a frame count argument unless motion is in progress
> hide #2 models
> hide #9/g ribbons
> hide #9/m ribbons
> wait
wait requires a frame count argument unless motion is in progress
> coordset #9 10
> wait
wait requires a frame count argument unless motion is in progress
> hide #9 models
> show #1 models
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 180 center #1.1 models #1.1
> turn y 2 180 center #1.2 models #1.2
> turn y 2 180 center #1.3 models #1.3
> turn y 2 180 center #1.4 models #1.4
> turn y 2 180 center #1.5 models #1.5
> turn y 2 180 center #1.6 models #1.6
> turn y 2 180 center #1.7 models #1.7
> turn y 2 180 center #1.8 models #1.8
> wait
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4
Movie saved to C:\Users\jason431/Desktop/RESCmovie/movie.mp4
executed movie.cxc
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> movie record
> wait
wait requires a frame count argument unless motion is in progress
> coordset #9 10
> wait
wait requires a frame count argument unless motion is in progress
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4
Movie encoding failed because no images were recorded.
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> movie record
> wait
wait requires a frame count argument unless motion is in progress
> coordset #9 1,
> wait
wait requires a frame count argument unless motion is in progress
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4
Movie encoding failed because no images were recorded.
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> movie record
> wait
wait requires a frame count argument unless motion is in progress
> coordset #9 1,
> wait 20
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4
Movie saved to C:\Users\jason431/Desktop/RESCmovie/movie.mp4
executed movie.cxc
> show #!9 models
> hide #!9 models
> show #!9 models
> hide #!1 models
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> movie record
> wait
wait requires a frame count argument unless motion is in progress
> coordset #9 1,
> wait 200
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4
Movie saved to C:\Users\jason431/Desktop/RESCmovie/movie.mp4
executed movie.cxc
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> movie record
> wait
wait requires a frame count argument unless motion is in progress
> coordset #9
> wait
wait requires a frame count argument unless motion is in progress
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4
Movie encoding failed because no images were recorded.
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> movie record
> wait
wait requires a frame count argument unless motion is in progress
> coordset #9
> wait 1
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4
Movie encoding failed because no images were recorded.
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> movie record
> wait
wait requires a frame count argument unless motion is in progress
> coordset #9
> wait
wait requires a frame count argument unless motion is in progress
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4
Movie encoding failed because no images were recorded.
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> movie record
> wait
wait requires a frame count argument unless motion is in progress
> coordset #9
> wait 0.1
Expected an integer >= 1 or a keyword
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> movie record
Already recording a movie
> movie stop
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> movie record
> view one
> hide models
> show #3-7 models
> turn y 2 180 center #2
> wait
> movie crossfade
> show #2 models
> hide #3-7 models
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 90 center #2
> wait
> movie crossfade
> transparency #2/4-9/0/12 50 target r
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 90 center #2
> wait
> movie crossfade
> transparency #2/4-9/0/12 0 target r
> wait
wait requires a frame count argument unless motion is in progress
> fly 10 one two
> wait
> show #9 models
> wait
wait requires a frame count argument unless motion is in progress
> hide #2 models
> hide #9/g ribbons
> hide #9/m ribbons
> wait
wait requires a frame count argument unless motion is in progress
> coordset #9
> wait 1
> hide #9 models
> show #1 models
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 180 center #1.1 models #1.1
> turn y 2 180 center #1.2 models #1.2
> turn y 2 180 center #1.3 models #1.3
> turn y 2 180 center #1.4 models #1.4
> turn y 2 180 center #1.5 models #1.5
> turn y 2 180 center #1.6 models #1.6
> turn y 2 180 center #1.7 models #1.7
> turn y 2 180 center #1.8 models #1.8
> wait
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4
Movie saved to C:\Users\jason431/Desktop/RESCmovie/movie.mp4
executed movie.cxc
> show #9 models
> hide #!1 models
> hide #9/g ribbons
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> movie record
> view one
> hide models
> show #3-7 models
> turn y 2 180 center #2
> wait
> movie crossfade
> show #2 models
> hide #3-7 models
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 90 center #2
> wait
> movie crossfade
> transparency #2/4-9/0/12 50 target r
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 90 center #2
> wait
> movie crossfade
> transparency #2/4-9/0/12 0 target r
> wait
wait requires a frame count argument unless motion is in progress
> fly 10 one two
> wait
> show #9 models
> wait
wait requires a frame count argument unless motion is in progress
> hide #2 models
> hide #9/g ribbons
> hide #9/m ribbons
> wait
wait requires a frame count argument unless motion is in progress
> coordset #9
> wait 10
> hide #9 models
> show #1 models
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 180 center #1.1 models #1.1
> turn y 2 180 center #1.2 models #1.2
> turn y 2 180 center #1.3 models #1.3
> turn y 2 180 center #1.4 models #1.4
> turn y 2 180 center #1.5 models #1.5
> turn y 2 180 center #1.6 models #1.6
> turn y 2 180 center #1.7 models #1.7
> turn y 2 180 center #1.8 models #1.8
> wait
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4
Movie saved to C:\Users\jason431/Desktop/RESCmovie/movie.mp4
executed movie.cxc
> save C:/Users/jason431/Desktop/RESCmovie/rescb-12.cxs includeMaps true
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> movie record supersample 3
> view one
> hide models
> show #3-7 models
> turn y 2 180 center #2
> wait
> movie crossfade
> show #2 models
> hide #3-7 models
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 90 center #2
> wait
> movie crossfade
> transparency #2/4-9/0/12 50 target r
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 90 center #2
> wait
> movie crossfade
> transparency #2/4-9/0/12 0 target r
> wait
wait requires a frame count argument unless motion is in progress
> fly 10 one two
> wait
> show #9 models
> wait
wait requires a frame count argument unless motion is in progress
> hide #2 models
> wait
wait requires a frame count argument unless motion is in progress
> coordset #9
> wait 21
> hide #9 models
> show #1 models
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 180 center #1.1 models #1.1
> turn y 2 180 center #1.2 models #1.2
> turn y 2 180 center #1.3 models #1.3
> turn y 2 180 center #1.4 models #1.4
> turn y 2 180 center #1.5 models #1.5
> turn y 2 180 center #1.6 models #1.6
> turn y 2 180 center #1.7 models #1.7
> turn y 2 180 center #1.8 models #1.8
> wait
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4
Movie saved to C:\Users\jason431/Desktop/RESCmovie/movie.mp4
executed movie.cxc
> hide #!1 models
> show #!9 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> cartoon style nucleic thickness 1.5
> cartoon style nucleic width 3
> struts #9
Created 16512 struts for #9, max length 7, max loop length 30
> close #10
> hide #!9 atoms
> save C:/Users/jason431/Desktop/RESCmovie/rescb-13.cxs includeMaps true
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> movie record supersample 3
> view one
> hide models
> show #3-7 models
> turn y 2 180 center #2
> wait
> movie crossfade
> show #2 models
> hide #3-7 models
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 90 center #2
> wait
> movie crossfade
> transparency #2/4-9/0/12 50 target r
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 90 center #2
> wait
> movie crossfade
> transparency #2/4-9/0/12 0 target r
> wait
wait requires a frame count argument unless motion is in progress
> fly 10 one two
> wait
> show #9 models
> wait
wait requires a frame count argument unless motion is in progress
> hide #2 models
> wait
wait requires a frame count argument unless motion is in progress
> coordset #9
> wait 21
> movie crossfade
> hide #9 models
> show #1 models
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 180 center #1.1 models #1.1
> turn y 2 180 center #1.2 models #1.2
> turn y 2 180 center #1.3 models #1.3
> turn y 2 180 center #1.4 models #1.4
> turn y 2 180 center #1.5 models #1.5
> turn y 2 180 center #1.6 models #1.6
> turn y 2 180 center #1.7 models #1.7
> turn y 2 180 center #1.8 models #1.8
> wait
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4 quality highest
Movie saved to C:\Users\jason431/Desktop/RESCmovie/movie.mp4
executed movie.cxc
> view one
> hide #!1 models
> show #!2 models
> view name one
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> movie record supersample 3 size 4000
Invalid "size" argument: Need exactly 2 ','-separated integers
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> movie record supersample 3 size 4000,4000
> view one
> hide models
> show #3-7 models
> turn y 2 180 center #2
> wait
> movie crossfade
> show #2 models
> hide #3-7 models
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 90 center #2
> wait
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\movie\movie.py", line 172, in capture_image
i.save(save_path, self.img_fmt)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\PIL\Image.py", line
2235, in save
save_handler(self, fp, filename)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\PIL\PpmImagePlugin.py", line 149, in _save
ImageFile._save(im, fp, [("raw", (0, 0) + im.size, 0, (rawmode, 0, 1))])
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\PIL\ImageFile.py",
line 536, in _save
s = e.encode_to_file(fh, bufsize)
OSError: [Errno 28] No space left on device
Error processing trigger "frame drawn":
OSError: [Errno 28] No space left on device
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\PIL\ImageFile.py",
line 536, in _save
s = e.encode_to_file(fh, bufsize)
See log for complete Python traceback.
> movie crossfade
> transparency #2/4-9/0/12 50 target r
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 90 center #2
> wait
> movie crossfade
> transparency #2/4-9/0/12 0 target r
> wait
wait requires a frame count argument unless motion is in progress
> fly 10 one two
> wait
> show #9 models
> wait
wait requires a frame count argument unless motion is in progress
> hide #2 models
> wait
wait requires a frame count argument unless motion is in progress
> coordset #9
> wait 21
> movie crossfade
> hide #9 models
> show #1 models
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 180 center #1.1 models #1.1
> turn y 2 180 center #1.2 models #1.2
> turn y 2 180 center #1.3 models #1.3
> turn y 2 180 center #1.4 models #1.4
> turn y 2 180 center #1.5 models #1.5
> turn y 2 180 center #1.6 models #1.6
> turn y 2 180 center #1.7 models #1.7
> turn y 2 180 center #1.8 models #1.8
> wait
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4 quality highest
Cannot open files: [Errno 28] No space left on device
> save C:/Users/jason431/Desktop/RESCmovie/rescb-14.cxs includeMaps true
——— End of log from Sat May 28 22:30:27 2022 ———
opened ChimeraX session
AttributeError: 'ModelMenuButton' does not have a signal with the signature
value_changed()
AttributeError: 'ModelMenuButton' does not have a signal with the signature
value_changed()
See log for complete Python traceback.
AttributeError: 'c ' does not have a signal with the signature value_changed()
AttributeError: 'c ' does not have a signal with the signature value_changed()
See log for complete Python traceback.
> hide #!1 models
> show #!2 models
> show #!2 atoms
> hide #!2 atoms
> open "C:/Users/jason431/Desktop/RESC Figures/Maps/RESC B/RESC-B0-new.mrc"
Opened RESC-B0-new.mrc as #10, grid size 256,256,256, pixel 1.06, shown at
level 0.0142, step 1, values float32
> open "C:/Users/jason431/Desktop/RESC Figures/Maps/RESC C/RESC-C_new.mrc"
Opened RESC-C_new.mrc as #11, grid size 256,256,256, pixel 1.06, shown at
level 0.0152, step 1, values float32
> ui tool show "Fit in Map"
> surface dust #10 size 10.6
> surface dust #11 size 10.6
Fit map RESC-C_new.mrc in map RESC-B0-new.mrc using 167609 points
correlation = 0.6457, correlation about mean = 0.1051, overlap = 62.05
steps = 112, shift = 5.55, angle = 3.99 degrees
Position of RESC-C_new.mrc (#11) relative to RESC-B0-new.mrc (#10)
coordinates:
Matrix rotation and translation
0.99757601 -0.06624619 0.02129664 11.79931427
0.06625757 0.99780254 0.00017155 -7.38764993
-0.02126121 0.00123993 0.99977319 2.67139465
Axis 0.00767656 0.30578754 0.95206883
Axis point 118.99042266 173.71571377 0.00000000
Rotation angle (degrees) 3.99028255
Shift along axis 0.37487844
Fit map RESC-C_new.mrc in map RESC-B0-new.mrc using 167609 points
correlation = 0.6457, correlation about mean = 0.1051, overlap = 62.05
steps = 44, shift = 0.00198, angle = 0.000562 degrees
Position of RESC-C_new.mrc (#11) relative to RESC-B0-new.mrc (#10)
coordinates:
Matrix rotation and translation
0.99757626 -0.06624563 0.02128686 11.80223685
0.06625699 0.99780258 0.00017213 -7.38831014
-0.02125149 0.00123869 0.99977339 2.67098392
Axis 0.00766388 0.30566297 0.95210893
Axis point 119.00356047 173.76129787 0.00000000
Rotation angle (degrees) 3.99007967
Shift along axis 0.37518572
> ui mousemode right "translate selected models"
> select #11
2 models selected
> view matrix models
> #11,0.99758,-0.066246,0.021287,44.011,0.066257,0.9978,0.00017213,-16.861,-0.021251,0.0012387,0.99977,4.2691
> view matrix models
> #11,0.99758,-0.066246,0.021287,93.44,0.066257,0.9978,0.00017213,-45.328,-0.021251,0.0012387,0.99977,27.15
> ui mousemode right "rotate selected models"
> ui mousemode right "translate selected models"
> ui mousemode right "rotate selected models"
> view matrix models
> #11,0.87062,0.1737,0.46028,15.458,0.48343,-0.47555,-0.73495,214.95,0.091223,0.86237,-0.49799,89.91
> view matrix models
> #11,0.87265,0.1166,0.47423,21.72,0.4882,-0.18351,-0.85322,187.22,-0.01246,0.97608,-0.21707,49.157
> ui mousemode right "translate selected models"
> view matrix models
> #11,0.87265,0.1166,0.47423,-59.417,0.4882,-0.18351,-0.85322,190.88,-0.01246,0.97608,-0.21707,55.818
> view matrix models
> #11,0.87265,0.1166,0.47423,-59.389,0.4882,-0.18351,-0.85322,200.66,-0.01246,0.97608,-0.21707,20.029
> ui mousemode right "rotate selected models"
> view matrix models
> #11,-0.97579,-0.21168,-0.055074,328.79,0.025386,-0.35969,0.93273,46.83,-0.21725,0.90874,0.35635,-19.665
> ui mousemode right "translate selected models"
> view matrix models
> #11,-0.97579,-0.21168,-0.055074,312.77,0.025386,-0.35969,0.93273,46.217,-0.21725,0.90874,0.35635,-5.8502
Fit map RESC-C_new.mrc in map RESC-B0-new.mrc using 167609 points
correlation = 0.8966, correlation about mean = 0.6657, overlap = 123.6
steps = 400, shift = 19.4, angle = 35.7 degrees
Position of RESC-C_new.mrc (#11) relative to RESC-B0-new.mrc (#10)
coordinates:
Matrix rotation and translation
-0.99020241 0.06909501 -0.12134690 288.33579218
-0.10804680 0.17138818 0.97926093 -7.29705213
0.08845947 0.98277768 -0.16224349 -5.06678117
Axis 0.01280636 -0.76401753 -0.64506838
Axis point 143.97041864 0.00000000 13.55598927
Rotation angle (degrees) 172.10809050
Shift along axis 12.53602882
> select clear
Fit map RESC-C_new.mrc in map RESC-B0-new.mrc using 167609 points
correlation = 0.8965, correlation about mean = 0.6656, overlap = 123.6
steps = 24, shift = 0.0121, angle = 0.00586 degrees
Position of RESC-C_new.mrc (#11) relative to RESC-B0-new.mrc (#10)
coordinates:
Matrix rotation and translation
-0.99019085 0.06911870 -0.12142772 288.34862674
-0.10811735 0.17144945 0.97924242 -7.29005703
0.08850268 0.98276532 -0.16229475 -5.07367566
Axis 0.01282152 -0.76403620 -0.64504596
Axis point 143.97696647 0.00000000 13.55710164
Rotation angle (degrees) 172.10358895
Shift along axis 12.53969000
Fit map RESC-C_new.mrc in map RESC-B0-new.mrc using 167609 points
correlation = 0.8965, correlation about mean = 0.6656, overlap = 123.6
steps = 28, shift = 0.00484, angle = 0.00908 degrees
Position of RESC-C_new.mrc (#11) relative to RESC-B0-new.mrc (#10)
coordinates:
Matrix rotation and translation
-0.99021060 0.06904911 -0.12130620 288.34613574
-0.10800288 0.17151233 0.97924404 -7.31139282
0.08842144 0.98275924 -0.16237582 -5.05409164
Axis 0.01280626 -0.76405947 -0.64501871
Axis point 143.97491111 0.00000000 13.56208381
Rotation angle (degrees) 172.11150641
Shift along axis 12.53895674
> select clear
Fit map RESC-C_new.mrc in map RESC-B0-new.mrc using 167609 points
correlation = 0.8965, correlation about mean = 0.6656, overlap = 123.6
steps = 28, shift = 0.00183, angle = 0.00571 degrees
Position of RESC-C_new.mrc (#11) relative to RESC-B0-new.mrc (#10)
coordinates:
Matrix rotation and translation
-0.99020714 0.06905381 -0.12133172 288.34889574
-0.10801870 0.17160851 0.97922544 -7.32114893
0.08844080 0.98274212 -0.16246887 -5.04064892
Axis 0.01280941 -0.76409064 -0.64498172
Axis point 143.97559937 0.00000000 13.57448625
Rotation angle (degrees) 172.11013125
Shift along axis 12.53872710
> close #10
> ui tool show "Color Zone"
> color zone #11 near #2 distance 10
> volume splitbyzone #11
Opened RESC-C_new.mrc 0 as #10.1, grid size 256,256,256, pixel 1.06, shown at
level 0.0152, step 1, values float32
Opened RESC-C_new.mrc 1 as #10.2, grid size 256,256,256, pixel 1.06, shown at
level 0.0152, step 1, values float32
Opened RESC-C_new.mrc 2 as #10.3, grid size 256,256,256, pixel 1.06, shown at
level 0.0152, step 1, values float32
Opened RESC-C_new.mrc 3 as #10.4, grid size 256,256,256, pixel 1.06, shown at
level 0.0152, step 1, values float32
Opened RESC-C_new.mrc 4 as #10.5, grid size 256,256,256, pixel 1.06, shown at
level 0.0152, step 1, values float32
Opened RESC-C_new.mrc 5 as #10.6, grid size 256,256,256, pixel 1.06, shown at
level 0.0152, step 1, values float32
Opened RESC-C_new.mrc 6 as #10.7, grid size 256,256,256, pixel 1.06, shown at
level 0.0152, step 1, values float32
Opened RESC-C_new.mrc 7 as #10.8, grid size 256,256,256, pixel 1.06, shown at
level 0.0152, step 1, values float32
Opened RESC-C_new.mrc 8 as #10.9, grid size 256,256,256, pixel 1.06, shown at
level 0.0152, step 1, values float32
Opened RESC-C_new.mrc 9 as #10.10, grid size 256,256,256, pixel 1.06, shown at
level 0.0152, step 1, values float32
Opened RESC-C_new.mrc 10 as #10.11, grid size 256,256,256, pixel 1.06, shown
at level 0.0152, step 1, values float32
> close #11
> hide #!10.1 models
> select clear
> surface dust #10.2 size 10.6
> surface dust #10.3 size 10.6
> surface dust #10.4 size 10.6
> surface dust #10.5 size 10.6
> surface dust #10.6 size 10.6
> surface dust #10.7 size 10.6
> surface dust #10.8 size 10.6
> surface dust #10.9 size 10.6
> surface dust #10.10 size 10.6
> surface dust #10.11 size 10.6
> transparency #10 50 target s
> hide #!10.2 models
> hide #!10.3 models
> hide #!10.4 models
> hide #!10.5 models
> hide #!10.6 models
> hide #!10.7 models
> hide #!10.8 models
> hide #!10.9 models
> hide #!10.10 models
> hide #!10.11 models
> show #!10.3 models
> volume #10.2 level 0.02125
> volume #10.2 level 0.009083
> hide #!10.2 models
> hide #!10.3 models
> show #!3.2 models
> show #!3.3 models
> hide #!3.3 models
> hide #!3.2 models
> show #3.2.1 models
> show #3.3.1 models
> hide #!3.3 models
> show #!10.3 models
> hide #!10.3 models
> show #!3.3 models
> show #!10.4 models
> volume #10.4 level 0.0289
> volume #10.5 level 0.01516
> volume #10.5 level 0.02655
> volume #10.6 level 0.01516
> volume #10.6 level 0.02742
> volume #10.7 level 0.03516
> select clear
> transparency 50 target s
> show #!2 atoms
> select clear
> show #!10.9 models
> volume #10.9 level 0.03452
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
9 atoms, 8 bonds, 1 residue, 1 model selected
> hide sel atoms
> select #10.5
2 models selected
> volume #10.5 level 0.04236
> select #10.5
2 models selected
> select #10.5
2 models selected
> select clear
> select /g:30-35
Nothing selected
> select /m:30-35
528 atoms, 596 bonds, 24 residues, 4 models selected
> nucleotides fill
> select clear
> color #!2 byhetero
> nucleotides atoms
> volume #10.10 level 0.03106
> volume #10.11 level 0.007785
> volume #10.11 level 0.004132
> close #10.11
> view three
Expected an objects specifier or a view name or a keyword
> view name three
> select clear
> view one
> select clear
> hide models
> show #3-7 models
> transparency 0 target s
> turn y 2 180 center #2
[Repeated 2 time(s)]
> view one
> turn y 2 180 center #2
> show #2 models
> hide #3-7 models
> hide atoms
> turn y 2 90 center #2
> transparency #2/4-9/0/12 50 target r
> turn y 2 90 center #2
> view one
> turn y 2 90 center #2
> transparency #2/4-9/0/12 80 target r
> transparency #2/4-9/0/12 75 target r
> turn y 2 90 center #2
> transparency #2/4-9/0/12 75 target r,p
Invalid "target" argument: Character ',' is not an allowed target, must be one
of acrsbmpfl
> transparency #2/4-9/0/12 75 target p
> transparency #2/4-9/0/12 75 target pbonds
Invalid "target" argument: Character 'o' is not an allowed target, must be one
of acrsbmpfl
> transparency #2/4-9/0/12 75 target p
> select #2/0:141
9 atoms, 8 bonds, 1 residue, 1 model selected
No visible atoms, bonds, or surfaces selected
> select #2/0:140
8 atoms, 7 bonds, 1 residue, 1 model selected
> select clear
> hide #!2 atoms
> hide sel
> select clear
> hide #2.1 models
> select clear
> view one
> turn y 2 90 center #2
[Repeated 1 time(s)]
> transparency #2/4-9/0/12 0 target r
> fly one three
[Repeated 1 time(s)]
> fly one three 10
> fly one two three
fly: position two does not contain model #1.4
> fly one 10 three
> fly one three
> view three
> view one
> view three 10
> view one
> view three 25
> hide #!2 models
> show #!2 models
> show #!10 models
> hide #!2 models
> show #!2 models
> hide #!10 models
> show #!9 models
> hide #!9 models
> show #!9 models
> hide #!9 models
> show #!10 models
> hide #!10 models
> show #!9 models
> hide #!9 models
> cartoon style modeHelix wrap
> show #!10 models
> hide #!10 models
> show #10 models
> hide #!10.1 models
> close #10.1
> show #10 models
> hide #!10#!10.2-10 target m
> show #10.4-10 models
> show #3.2-3 models
> transparency 50 target s
> show atoms
> hide #2/6:79
> view three
> 2dlabels text "Blue Fluorescent Protein" color light sea green size 26 xpos
> .03 ypos .92
> wait 60
> 2dlabels #2 ypos .03 size 40 frames 60
> wait 120
> 2dlabels #11 ypos .03 size 40 frames 60
> wait 120
> close #11
> view one
> hide models
> show #3-7 models
> transparency 0 target s
> hide atoms
> view one
> 2dlabels text RESC9 color#7DB1B1 size 18 x .03 y .92
Expected a keyword
> 2dlabels text RESC9 color #7DB1B1 size 18 xpos .03 ypos .92
> 2dlabels text RESC9 color #7DB1B1 size 18 xpos .1 ypos .92
> 2dlabels text RESC9 color #7DB1B1 size 18 xpos .1 ypos 5
> 2dlabels text RESC9 color #7DB1B1 size 18 xpos .1 ypos 4
> 2dlabels text RESC9 color #7DB1B1 size 18 xpos .1 ypos 3
> 2dlabels text RESC9 color #7DB1B1 size 18 xpos .1 ypos 0.5
> 2dlabels text RESC9 color #7DB1B1 size 18 xpos .1 ypos 0.8
[Repeated 1 time(s)]
> 2dlabels text RESC9 color #7DB1B1 size 18 xpos .1 ypos 0.3
> 2dlabels text RESC9 color #7DB1B1 size 18 xpos .2 ypos 0.3
> 2dlabels text RESC9 color #7DB1B1 size 18 xpos .18 ypos 0.3
> close #12.1-10
> 2dlabels text RESC9 color #7DB1B1 size 18 xpos .18 ypos 0.3 bold true
> close #12.1
> close #12.11
> 2dlabels text RESC9 color #7DB1B1 size 18 xpos .18 ypos 0.3 bold true
> graphics silhouettes true
> graphics silhouettes false
> 2dlabels text RESC9 color #7DB1B1 size 18 xpos .18 ypos 0.3 bold true
> outline 0
> close #13.1
> save "C:/Users/jason431/Desktop/RESC Figures/Maps/RESC C/test.png" width 830
> height 765 supersample 3
> graphics silhouettes true
> graphics silhouettes false
> graphics silhouettes true
> graphics silhouettes false
> graphics silhouettes true
> graphics silhouettes false
> 2dlabels text RESC9 color #7DB1B1 size 18 xpos .18 ypos 0.3
> hide #13.1 models
> show #13.1 models
> close #13.2
> 2dlabels text RESC9 color #7DB1B1 size 18 xpos .18 ypos 0.3 font Arial
> close #13.1
> 2dlabels text RESC9 color #7DB1B1 size 18 xpos .18 ypos 0.3 bold true
> outline 0 font Arial
> close #13.1
> 2dlabels listfonts
235 fonts available:
Agency FB
Algerian
Arial
Arial Black
Arial Narrow
Arial Rounded MT Bold
Bahnschrift
Bahnschrift Condensed
Bahnschrift Light
Bahnschrift Light Condensed
Bahnschrift Light SemiCondensed
Bahnschrift SemiBold
Bahnschrift SemiBold Condensed
Bahnschrift SemiBold SemiConden
Bahnschrift SemiCondensed
Bahnschrift SemiLight
Bahnschrift SemiLight Condensed
Bahnschrift SemiLight SemiConde
Baskerville Old Face
Bauhaus 93
Bell MT
Berlin Sans FB
Berlin Sans FB Demi
Bernard MT Condensed
Blackadder ITC
Bodoni MT
Bodoni MT Black
Bodoni MT Condensed
Bodoni MT Poster Compressed
Book Antiqua
Bookman Old Style
Bookshelf Symbol 7
Bradley Hand ITC
Britannic Bold
Broadway
Brush Script MT
Calibri
Calibri Light
Californian FB
Calisto MT
Cambria
Cambria Math
Candara
Candara Light
Castellar
Centaur
Century
Century Gothic
Century Schoolbook
Chiller
Colonna MT
Comic Sans MS
Consolas
Constantia
Cooper Black
Copperplate Gothic Bold
Copperplate Gothic Light
Corbel
Corbel Light
Courier
Courier New
Curlz MT
Ebrima
Edwardian Script ITC
Elephant
Engravers MT
Eras Bold ITC
Eras Demi ITC
Eras Light ITC
Eras Medium ITC
Felix Titling
Fixedsys
Footlight MT Light
Forte
Franklin Gothic Book
Franklin Gothic Demi
Franklin Gothic Demi Cond
Franklin Gothic Heavy
Franklin Gothic Medium
Franklin Gothic Medium Cond
Freestyle Script
French Script MT
Gabriola
Gadugi
Garamond
Georgia
Gigi
Gill Sans MT
Gill Sans MT Condensed
Gill Sans MT Ext Condensed Bold
Gill Sans Ultra Bold
Gill Sans Ultra Bold Condensed
Gloucester MT Extra Condensed
Goudy Old Style
Goudy Stout
Haettenschweiler
Harlow Solid Italic
Harrington
High Tower Text
HoloLens MDL2 Assets
Impact
Imprint MT Shadow
Informal Roman
Ink Free
Javanese Text
Jokerman
Juice ITC
Kristen ITC
Kunstler Script
Leelawadee UI
Leelawadee UI Semilight
Lucida Bright
Lucida Calligraphy
Lucida Console
Lucida Fax
Lucida Handwriting
Lucida Sans
Lucida Sans Typewriter
Lucida Sans Unicode
MS Gothic
MS Outlook
MS PGothic
MS Reference Sans Serif
MS Reference Specialty
MS Sans Serif
MS Serif
MS Shell Dlg 2
MS UI Gothic
MT Extra
MV Boli
Magneto
Maiandra GD
Malgun Gothic
Malgun Gothic Semilight
Marlett
Matura MT Script Capitals
Microsoft Himalaya
Microsoft JhengHei
Microsoft JhengHei Light
Microsoft JhengHei UI
Microsoft JhengHei UI Light
Microsoft New Tai Lue
Microsoft PhagsPa
Microsoft Sans Serif
Microsoft Tai Le
Microsoft YaHei
Microsoft YaHei Light
Microsoft YaHei UI
Microsoft YaHei UI Light
Microsoft Yi Baiti
MingLiU-ExtB
MingLiU_HKSCS-ExtB
Mistral
Modern
Modern No. 20
Mongolian Baiti
Monotype Corsiva
Myanmar Text
NSimSun
Niagara Engraved
Niagara Solid
Nirmala UI
Nirmala UI Semilight
OCR A Extended
Old English Text MT
Onyx
PMingLiU-ExtB
Palace Script MT
Palatino Linotype
Papyrus
Parchment
Perpetua
Perpetua Titling MT
Playbill
Poor Richard
Pristina
Rage Italic
Ravie
Rockwell
Rockwell Condensed
Rockwell Extra Bold
Roman
Script
Script MT Bold
Segoe MDL2 Assets
Segoe Print
Segoe Script
Segoe UI
Segoe UI Black
Segoe UI Emoji
Segoe UI Historic
Segoe UI Light
Segoe UI Semibold
Segoe UI Semilight
Segoe UI Symbol
Showcard Gothic
SimSun
SimSun-ExtB
Sitka
Sitka Banner
Sitka Display
Sitka Heading
Sitka Small
Sitka Subheading
Sitka Text
Small Fonts
Snap ITC
Stencil
Sylfaen
Symbol
System
Tahoma
Tempus Sans ITC
Terminal
Times New Roman
Trebuchet MS
Tw Cen MT
Tw Cen MT Condensed
Tw Cen MT Condensed Extra Bold
Verdana
Viner Hand ITC
Vivaldi
Vladimir Script
Webdings
Wide Latin
Wingdings
Wingdings 2
Wingdings 3
Yu Gothic
Yu Gothic Light
Yu Gothic Medium
Yu Gothic UI
Yu Gothic UI Light
Yu Gothic UI Semibold
Yu Gothic UI Semilight
> 2dlabels text RESC9 color #7DB1B1 size 18 xpos .18 ypos 0.3 bold true
> outline 0 font Arial Black
Expected a keyword
> 2dlabels text RESC9 color #7DB1B1 size 18 xpos .18 ypos 0.3 bold true
> outline 0 font ArialBlack
> hide #13.1 models
> show #13.1 models
> hide #13.2 models
> show #13.2 models
> hide #13.1 models
> volume #6 level 0.01996
> volume #6 level 0.02123
> volume #6 level 0.01996
> view three
> transparency 50
> transparency 90
> show #!2 models
> transparency 50
> transparency 70
> show #!2 atoms
> view one
> hide #!2 atoms
> hide models
> show #!2 models
> show #!13 models
> show #13.1 models
> show #13.2 models
> hide #13.1 models
> hide #13.2 models
> show #13.2 models
> show #13.1 models
> hide #13.2 models
> 2dlabels text RESC9 color #7DB1B1 size 25 xpos .18 ypos 0.3 bold true
> outline 0 font Arial
> 2dlabels text RESC9 color #7DB1B1 size 25 xpos .15 ypos 0.3 bold true
> outline 0 font Arial
> close #13.1-3
> 2dlabels text RESC12 color #EC87C0 size 25 xpos .5 ypos 0.3 bold true
> outline 0 font Arial
> 2dlabels text RESC12 color #EC87C0 size 25 xpos .6 ypos 0.1 bold true
> outline 0 font Arial
> close #13.1
> view one
> 2dlabels text RESC8 color #AD93E6 size 25 xpos .8 ypos 0.6 bold true outline
> 0 font Arial
> 2dlabels text RESC8 color #AD93E6 size 25 xpos .7 ypos 0.6 bold true outline
> 0 font Arial
> 2dlabels text RESC8 color #AD93E6 size 25 xpos .7.5 y 0.6 bold true outline
> 0 font Arial
Invalid "xpos" argument: Expected a number
> 2dlabels text RESC8 color #AD93E6 size 25 xpos .75 ypos 0.6 bold true
> outline 0 font Arial
> close #13.1
> close #13.3
> 2dlabels text RESC5 color #FC6E51 size 25 xpos .75 ypos 0.8 bold true
> outline 0 font Arial
> 2dlabels text RESC5 color #FC6E51 size 25 xpos .8 ypos 0.8 bold true outline
> 0 font Arial
> close #13.1
> 2dlabels text RESC10 color #8BC163 size 25 xpos .1 ypos 0.75 bold true
> outline 0 font Arial
> 2dlabels text RESC10 color #8BC163 size 25 xpos .15 ypos 0.7 bold true
> outline 0 font Arial
> 2dlabels text RESC10 color #8BC163 size 25 xpos .15 ypos 0.65 bold true
> outline 0 font Arial
> close #13.1
> close #13.6
> 2dlabels text RESC14 color #F6BA59 size 25 xpos .1 ypos 0.5 bold true
> outline 0 font Arial
> 2dlabels text RESC14 color #F6BA59 size 25 xpos .13 ypos 0.5 bold true
> outline 0 font Arial
> close #13.1
> show #!3 models
> show #!4 models
> hide #!3 models
> show #3-7 models
[Repeated 1 time(s)]
> transparency 0 target s
> select clear
> 2dlabels text RESC6 color #5D9CEC size 25 xpos .2 ypos 0.9 bold true outline
> 0 font Arial
> 2dlabels text RESC6 color #5D9CEC size 25 xpos .2 ypos 0.85 bold true
> outline 0 font Arial
> 2dlabels text RESC6 color #5D9CEC size 25 xpos .2 ypos 0.87 bold true
> outline 0 font Arial
> close #13.1
> close #13.8
> 2dlabels text RESC6 color #5D9CEC size 25 xpos .09 ypos 0.8 bold true
> outline 0 font Arial
> close #13.1
> 2dlabels text gRNA color #ff0000 size 25 xpos .1 ypos 0.8 bold true outline
> 0 font Arial
> 2dlabels text gRNA color #ff0000 size 25 xpos .14 ypos 0.77 bold true
> outline 0 font Arial
> close #13.1
> 2dlabels text gRNA color #ff0000 size 25 xpos .14 ypos 0.74 bold true
> outline 0 font Arial
> close #13.1
> close #13.8
> 2dlabels text gRNA color #ff0000 size 25 xpos .14 ypos 0.72 bold true
> outline 0 font Arial
> 2dlabels text RESC6 color #5D9CEC size 25 xpos .09 ypos 0.8 bold true
> outline 0 font Arial
> close #13.9
> close #13.8
> 2dlabels text gRNA color #ff0000 size 25 xpos .14 ypos 0.72 bold true
> outline 0 font Arial
> close #13.8
> 2dlabels text RESC6 color #5D9CEC size 25 xpos .2 ypos 0.87 bold true
> outline 0 font Arial
> hide #!13 models
> hide #13.1 models
> hide #13.2 models
> hide #13.3 models
> hide #13.4 models
> hide #13.5 models
> hide #13.6 models
> hide #13.7 models
> hide #13.8 models
> show #13.1-8
> hide #13.1-8
> turn y 2 180 center #2
> show #2 models
> hide #3-7 models
> turn y 2 90 center #2
> show #!3 models
> hide #!3 models
> show #3-7 models
> 2dlabels text RESC7 color #3C3B3D size 25 xpos .2 ypos 0.87 bold true
> outline 0 font Arial bgColor white margin 1
> color #13.9 #3c3b3d14 models
> color #13.9 #3c3b3d00 models
> color #13.9 #3c3b3d models transparency 0
> color #13.9 white models transparency 0
> color #13.9 #cacaca models transparency 0
> close #13.9
> 2dlabels text RESC7 color #3C3B3D size 25 xpos .2 ypos 0.87 bold true
> outline 0 font Arial bgColor #cacaca margin 1
> color #13.9 #3c3b3dfc models
> color #13.9 #3c3b3df5 models
> color #13.9 #3c3b3d96 models
> close #13.9
> 2dlabels text RESC7 color #3C3B3D size 25 xpos .2 ypos 0.87 bold true
> outline 0 font Arial bgColor #cacaca80 margin 1
> show #13.8 models
> show #13.7 models
> show #13.6 models
> show #13.5 models
> show #13.3 models
> show #13.1 models
> show #13.4 models
> turn y 2 90 center #2
> windowsize 100 100
> windowsize 500 500
> windowsize 800 800
> windowsize 900 800
> turn y 2 90 center #2
> 2dlabels text RESC7 color #3C3B3D size 25 xpos .5 ypos 0.5 bold true outline
> 0 font Arial bgColor #cacaca80 margin 1
> windowsize 900 800
> 2dlabels text RESC7 color #3C3B3D size 25 xpos .6 ypos 0.4 bold true outline
> 0 font Arial bgColor #cacaca80 margin 1
> 2dlabels text RESC7 color #3C3B3D size 25 xpos .6 ypos 0.4 bold true outline
> 0 font Arial bgColor #cacaca1A margin 1
> 2dlabels text RESC7 color #3C3B3D size 25 xpos .6 ypos 0.4 bold true outline
> 0 font Arial bgColor #cacacaFF margin 1
> close #13.9-13
> 2dlabels text RESC7 color #3C3B3D size 25 xpos .6 ypos 0.4 bold true outline
> 0 font Arial bgColor #FFFFFFCA margin 1
> 2dlabels text RESC7 color #3C3B3D size 25 xpos .6 ypos 0.35 bold true
> outline 0 font Arial bgColor #FFFFFFCA margin 1
> 2dlabels text RESC7 color #3C3B3D size 25 xpos .6 ypos 0.45 bold true
> outline 0 font Arial bgColor #FFFFFFCA margin 1
> close #13.9-10
> hide #13.1-8 target m
> 2dlabels text RESC7 color #3C3B3D size 25 xpos .4 ypos 0.6 bold true outline
> 0 font Arial bgColor #FFFFFFCA margin 1
> 2dlabels text RESC7 color #3C3B3D size 25 xpos .45 ypos 0.55 bold true
> outline 0 font Arial bgColor #FFFFFFCA margin 1
> 2dlabels text RESC7 color #3C3B3D size 25 xpos .5 ypos 0.55 bold true
> outline 0 font Arial bgColor #FFFFFFCA margin 1
> close #13.9-11
> 2dlabels text RESC7 color #3C3B3D size 25 xpos .47 ypos 0.53 bold true
> outline 0 font Arial bgColor #FFFFFFCA margin 1
> close #13.9
> close #13.12
> 2dlabels text RESC7 color #3C3B3D size 25 xpos .47 ypos 0.53 bold true
> outline 0 font Arial bgColor #FFFFFFCA margin 1
> hide #2.1 models
> 2dlabels text mRNA color #ff00ff size 25 xpos .47 ypos 0.3 bold true outline
> 0 font Arial bgColor #FFFFFFCA margin 1
> 2dlabels text mRNA color #ff00ff size 25 xpos .5 ypos 0.32 bold true outline
> 0 font Arial bgColor #FFFFFFCA margin 1
> close #13.10
> 2dlabels text mRNA color #ff00ff size 25 xpos .5 ypos 0.37 bold true outline
> 0 font Arial bgColor #FFFFFFCA margin 1
> close #13.10-11
> 2dlabels text mRNA color #ff00ff size 25 xpos .5 ypos 0.37 bold true outline
> 0 font Arial bgColor #FFFFFFCA margin 1
> hide #13.9 models
> hide #13.10 models
> windowsize 900 800
> view one
> show #3-7 models
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> windowsize 900 800
> movie record supersample 2
> view one
> hide models
> show #3-7 models
> transparency 0 target s
> hide atoms
> wait
wait requires a frame count argument unless motion is in progress
> show #13.1-8
> wait 60
> hide #13.1-8
> turn y 2 90 center #2
> wait
> show #13.9-10
> wait 60
> hide #13.9-10
> turn y 2 90 center #2
> wait
> movie crossfade
> show #2 models
> hide #2.1 models
> hide #3-7 models
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 90 center #2
> wait
> movie crossfade
> transparency #2/4-9/0/12 75 target r
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 90 center #2
> wait
> movie crossfade
> transparency #2/4-9/0/12 0 target r
> wait
wait requires a frame count argument unless motion is in progress
> view three 25
> wait
> movie crossfade
> cartoon style modeHelix wrap
> show #10.4-10 models
> show #3.2-3 models
> transparency 50 target s
> show atoms
> hide #2/6:79
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4 quality highest
Movie saved to C:\Users\jason431/Desktop/RESCmovie/movie.mp4
executed movie.cxc
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> windowsize 900 800
> movie record supersample 2
> view one
> hide models
> show #3-7 models
> transparency 0 target s
> hide atoms
> wait
wait requires a frame count argument unless motion is in progress
> show #13.1-8
> wait 60
> hide #13.1-8
> turn y 2 90 center #2
> wait
> show #13.9-10
> wait 60
> hide #13.9-10
> turn y 2 90 center #2
> wait
> movie crossfade 10
> show #2 models
> hide #2.1 models
> hide #3-7 models
> wait
wait requires a frame count argument unless motion is in progress
> show #13.1-8
> wait 60
> hide #13.1-8
> turn y 2 90 center #2
> wait
> show #13.9-10
> wait 60
> hide #13.9-10
> wait
wait requires a frame count argument unless motion is in progress
> movie crossfade 10
> transparency #2/4-9/0/12 75 target r
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 90 center #2
> wait
> movie crossfade
> transparency #2/4-9/0/12 0 target r
> wait
wait requires a frame count argument unless motion is in progress
> view three 25
> wait
> movie crossfade
> cartoon style modeHelix wrap
> show #10.4-10 models
> show #3.2-3 models
> transparency 50 target s
> show atoms
> hide #2/6:79
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4 quality highest
Movie saved to C:\Users\jason431/Desktop/RESCmovie/movie.mp4
executed movie.cxc
> view one
> select clear
> show #13.10 models
> show #13.1 models
> 2dlabels text mRNA color #ff00ff size 25 xpos .6 ypos 0.37 bold true outline
> 0 font Arial bgColor #FFFFFFCA margin 1
> hide #13.10 models
> show #13.10 models
> hide #13.1 models
> hide #13.11 models
> show #13.1,11
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> windowsize 900 800
> movie record supersample 2
> view one
> hide models
> show #3-7 models
> transparency 0 target s
> hide atoms
> wait
wait requires a frame count argument unless motion is in progress
> show #13.1-8
> wait 60
> hide #13.1-8
> turn y 2 90 center #2
> wait
> show #13.9-10
> wait 60
> hide #13.9-10
> turn y 2 90 center #2
> wait
> movie crossfade 10
> show #2 models
> hide #2.1 models
> hide #3-7 models
> wait
wait requires a frame count argument unless motion is in progress
> show #13.1-8
> wait 60
> hide #13.1-8
> turn y 2 90 center #2
> wait
> show #13.9-10
> wait 60
> hide #13.9-10
> movie crossfade 10
> transparency #2/4-9/0/12 75 target r
> show #13.1,11
> wait 60
> hide #13.1,11
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 90 center #2
> wait
> movie crossfade
> transparency #2/4-9/0/12 0 target r
> wait
wait requires a frame count argument unless motion is in progress
> view three 25
> wait
> movie crossfade
> cartoon style modeHelix wrap
> show #10.4-10 models
> show #3.2-3 models
> transparency 50 target s
> show atoms
> hide #2/6:79
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4 quality highest
Movie saved to C:\Users\jason431/Desktop/RESCmovie/movie.mp4
executed movie.cxc
> view one
> turn y 2 90 center #2
> show #13.11 models
> 2dlabels text gRNA color #ff0000 size 25 xpos .6 ypos 0.72 bold true outline
> 0 font Arial
> 2dlabels text gRNA color #ff0000 size 25 xpos .6 ypos 0.6 bold true outline
> 0 font Arial
> 2dlabels text gRNA color #ff0000 size 25 xpos .6 ypos 0.65 bold true outline
> 0 font Arial
> 2dlabels text gRNA color #ff0000 size 25 xpos .6 ypos 0.65 bold true outline
> 0 font Arial bgColor #FFFFFFCA margin 1
> close #13.12-15
> 2dlabels text gRNA color #ff0000 size 25 xpos .6 ypos 0.65 bold true outline
> 0 font Arial bgColor #FFFFFFCA margin 1
> close #13.11-12
> 2dlabels text gRNA color #ff0000 size 25 xpos .6 ypos 0.65 bold true outline
> 0 font Arial bgColor #FFFFFFCA margin 1
> 2dlabels text mRNA color #ff00ff size 25 xpos .5 ypos 0.37 bold true outline
> 0 font Arial bgColor #FFFFFFCA margin 1
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> windowsize 900 800
> movie record supersample 2
> view one
> hide models
> show #3-7 models
> transparency 0 target s
> hide atoms
> wait
wait requires a frame count argument unless motion is in progress
> show #13.1-8
> wait 60
> hide #13.1-8
> turn y 2 90 center #2
> wait
> show #13.9-10
> wait 60
> hide #13.9-10
> turn y 2 90 center #2
> wait
> movie crossfade 10
> show #2 models
> hide #2.1 models
> hide #3-7 models
> wait
wait requires a frame count argument unless motion is in progress
> show #13.1-8
> wait 60
> hide #13.1-8
> turn y 2 90 center #2
> wait
> show #13.9-10
> wait 60
> hide #13.9-10
> movie crossfade 10
> transparency #2/4-9/0/12 75 target r
> show #13.11-12
> wait 60
> hide #13.11-12
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 90 center #2
> wait
> movie crossfade
> transparency #2/4-9/0/12 0 target r
> wait
wait requires a frame count argument unless motion is in progress
> view three 60
> wait
> movie crossfade 10
> cartoon style modeHelix wrap
> show #10.4-10 models
> show #3.2-3 models
> transparency 50 target s
> show atoms
> hide #2/6:79
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4 quality highest
Movie saved to C:\Users\jason431/Desktop/RESCmovie/movie.mp4
executed movie.cxc
> close #13.11
> 2dlabels text gRNA color #ff0000 size 25 xpos .6 ypos 0.62 bold true outline
> 0 font Arial bgColor #FFFFFFCA margin 1
> hide #13.11 models
> ui tool show "Side View"
> save C:/Users/jason431/Desktop/RESCmovie/rescb-15.cxs includeMaps true
——— End of log from Mon May 30 15:07:39 2022 ———
opened ChimeraX session
> view three
Drag select of 3.2 RESC-B0_3.4A_0910.mrc 1 , 3.3 RESC-B0_3.4A_0910.mrc 2 ,
10.5 RESC-C_new.mrc 4 , 10.10 RESC-C_new.mrc 9 , 214 atoms, 77 residues, 177
bonds
> select clear
> view three
> hide #!13 models
> view three
> hide #2/0
> hide #!10.10 models
> hide #2/0 target r
> hide #!10 models
> view three
> hide #2
> hide #2 target r
> hide #!3 models
> show #2/m: 30-34
> show #2
> hide #2
> show #2/m: 30-34
> show #2 target r
> hide #2 target r
> hide #!2 atoms
> show #2/m: 30-34, #2/6: 59-92, #2/4: 35-47, #2/8: 427-472
Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword
> show #2/m: 30-34, #2/6: 59-92, #2/4: 35-47, #2/8: 427-472 target r target a
Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword
> show #2/m: 30-34, #2/6: 59-92, #2/4: 35-47, #2/8: 427-472 target r
Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword
> show #2/m: 30-34, #2/6: 59-92, #2/4: 35-47, #2/8: 427-472 target ra
Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword
> show #2/m:30-34/6: 59-92/4: 35 target ra
> show #2/m:30-34/6: 59-92/4: 35-47/8: 427-472 target r target a
Repeated keyword argument "target"
> show #2/m:30-34/6: 59-92/4: 35-47/8: 427-472 target ra
> hide #2 target ra
> show #2/m:30-34/6: 59-92/4: 35-47/8: 427-437 target ra
> show #!2 cartoons
> hide #2 target ra
> show #2/m:30-34/6: 59-92, 256-229/4: 35-47/8: 433-465 target ra
> show #2/m:30-34/6: 59-92 /6:256-229/4: 35-47/8: 433-465 target ra
> show #2/m:30-34/6: 59-92 /6:256-229 /4: 35-47/8: 433-465 target ra
> show #!2 cartoons
> hide #2 target ra
> show #2/m:30-34/6: 59-92, 256-229/4: 35-47/8: 433-465 target ra
> hide #2 target ra
> show #2/m:30-34/6: 59-92 /6: 256-229/4: 35-47/8: 433-465 target ra
> show #2/m:30-34/6: 59-92 /6: 229-256/4: 35-47/8: 433-465 target ra
> vop zone #10 near #2/m:30-34/6: 59-92 /6: 229-256/4: 35-47/8: 433-465 range
> 2 newMap true
Opened RESC-C_new.mrc 1 zone as #11, grid size 256,256,256, pixel 1.06, shown
at step 1, values float32
Opened RESC-C_new.mrc 2 zone as #12, grid size 256,256,256, pixel 1.06, shown
at step 1, values float32
Opened RESC-C_new.mrc 3 zone as #14, grid size 256,256,256, pixel 1.06, shown
at step 1, values float32
Opened RESC-C_new.mrc 4 zone as #15, grid size 256,256,256, pixel 1.06, shown
at step 1, values float32
Opened RESC-C_new.mrc 5 zone as #16, grid size 256,256,256, pixel 1.06, shown
at step 1, values float32
Opened RESC-C_new.mrc 6 zone as #17, grid size 256,256,256, pixel 1.06, shown
at step 1, values float32
Opened RESC-C_new.mrc 7 zone as #18, grid size 256,256,256, pixel 1.06, shown
at step 1, values float32
Opened RESC-C_new.mrc 8 zone as #19, grid size 256,256,256, pixel 1.06, shown
at step 1, values float32
Opened RESC-C_new.mrc 9 zone as #20, grid size 256,256,256, pixel 1.06, shown
at step 1, values float32
> color #!2 byhetero
> select clear
> color #!2 byhetero
[Repeated 1 time(s)]Drag select of 621 atoms, 113 residues, 549 bonds, 11
RESC-C_new.mrc 1 zone , 15 RESC-C_new.mrc 4 zone , 17 RESC-C_new.mrc 6 zone ,
19 RESC-C_new.mrc 8 zone
> color sel byhetero
> select clear
Drag select of 615 atoms, 113 residues, 542 bonds, 11 RESC-C_new.mrc 1 zone ,
15 RESC-C_new.mrc 4 zone , 17 RESC-C_new.mrc 6 zone , 19 RESC-C_new.mrc 8 zone
> select clear
Drag select of 621 atoms, 113 residues, 549 bonds, 11 RESC-C_new.mrc 1 zone ,
15 RESC-C_new.mrc 4 zone , 17 RESC-C_new.mrc 6 zone , 19 RESC-C_new.mrc 8 zone
> hide sel atoms
> select clear
> ui tool show "Color Zone"
> hide #!14 models
> hide #!15 models
> show #!15 models
> hide #!15 models
> show #!15 models
> show #!14 models
> hide #!11 models
> show #!11 models
> hide #!11 models
> show #!11 models
> hide #!12 models
> show #!12 models
> hide #!12 models
> show #!12 models
> close #12
> hide #!19 models
> hide #!20 models
> show #!20 models
> close #20
> hide #!18 models
> show #!18 models
> close #18
> hide #!17 models
> hide #!16 models
> close #16
> hide #!15 models
> show #!15 models
> hide #!14 models
> show #!14 models
> close #14
> hide #!15 models
> show #!15 models
> hide #!15 models
> show #!15 models
> hide #!11 models
> show #!11 models
> show #!17 models
> show #!19 models
> color zone #11 near #2 target r
Expected a keyword
> color zone #11 near #2
> color zone #11 near #2/r
color zone: No atoms specified.
> color #11 red models transparency 0
> hide #!15 models
> show #!15 models
> hide #!17 models
> show #!17 models
> color #17 #aadd99 models transparency 0
> color #17 #ad93e6 models transparency 0
> color #19 #ff66bb models transparency 0
> color #19 #f6ba59 models transparency 0
> color #15 #55dd99 models transparency 0
> color #15 #5d9cec models transparency 0
> hide #!11 models
> hide #!15 models
> hide #!17 models
> hide #!19 models
> show #11,15,17,19 models
> surface dust range 5
Missing or invalid "surfaces" argument: invalid surfaces specifier
> surface dust #11-19 range 5
Expected a keyword
> surface dust #11-19 5
Expected a keyword
> surface dust #11-19 5
Expected a keyword
> surface dust #11-19 size 10
> view three
> transparency 70 target s
> ui tool show "Side View"
> view name four
> turn x 2 90 center #2/m: 33
> view name four
> turn x 2 90 center #2/m: 33
> view four
> turn x 90 center #2/m: 33
> save C:/Users/jason431/Desktop/RESCmovie/rescb-16.cxs includeMaps true
——— End of log from Mon May 30 16:11:44 2022 ———
opened ChimeraX session
> view three
> ui mousemode right select
> select #2/6:59
6 atoms, 5 bonds, 1 residue, 1 model selected
> select up
46 atoms, 46 bonds, 6 residues, 1 model selected
> select down
6 atoms, 5 bonds, 1 residue, 1 model selected
> select clear
> view three
> view name four
> view one
> view name onee
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> windowsize 900 800
> hide #!2 atoms
> show #!2 cartoons
> graphics selection color white
> movie record supersample 2
> view onee
> hide models
> show #3-7 models
> transparency 0 target s
> hide atoms
> wait
wait requires a frame count argument unless motion is in progress
> show #13.1-8
> wait 60
> hide #13.1-8
> turn y 2 90 center #2
> wait
> show #13.9-10
> wait 60
> hide #13.9-10
> turn y 2 90 center #2
> wait
> movie crossfade 10
> show #2 models
> hide #2.1 models
> hide #3-7 models
> wait
wait requires a frame count argument unless motion is in progress
> show #13.1-8
> wait 60
> hide #13.1-8
> turn y 2 90 center #2
> wait
> show #13.9-10
> wait 60
> hide #13.9-10
> movie crossfade 10
> transparency #2/4-9/0/12 75 target r
> show #13.11-12
> wait 60
> hide #13.11-12
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 90 center #2
> wait
> movie crossfade 10
> transparency #2/4-9/0/12 0 target r
> cartoon style modeHelix wrap
> wait 30
> view four 60
> wait 60
> movie crossfade 20
> select #2/m:30-34/6: 61-92 /6: 229-256/4: 35-47/8: 433-465
962 atoms, 989 bonds, 111 residues, 1 model selected
> select ~sel
107206 atoms, 109655 bonds, 24 pseudobonds, 13289 residues, 86 models selected
> perframe "transparency 100 sel target r" frames 70
> show #2/m:30-34/6: 61-92 /6: 229-256/4: 35-47/8: 433-465 target a
> show #11,15,17,19 models
> surface dust #11-19 size 10
> transparency 70 target s
> wait
wait requires a frame count argument unless motion is in progress
> turn x 2 90 center #2/m:34
> wait
Error executing per-frame command 'transparency 100 sel target r': Expected a
collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels', 'models',
'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword
> movie crossfade 10
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4 quality highest
Movie saved to C:\Users\jason431/Desktop/RESCmovie/movie.mp4
executed movie.cxc
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> windowsize 900 800
> hide #!2 atoms
> show #!2 cartoons
> graphics selection color white
> movie record supersample 2
> view onee
> hide models
> show #3-7 models
> transparency 0 target s
> hide atoms
> wait
wait requires a frame count argument unless motion is in progress
> show #13.1-8
> wait 60
> hide #13.1-8
> turn y 2 90 center #2
> wait
> show #13.9-10
> wait 60
> hide #13.9-10
> turn y 2 90 center #2
> wait
> movie crossfade 10
> show #2 models
> hide #2.1 models
> hide #3-7 models
> wait
wait requires a frame count argument unless motion is in progress
> show #13.1-8
> wait 60
> hide #13.1-8
> turn y 2 90 center #2
> wait
> show #13.9-10
> wait 60
> hide #13.9-10
> movie crossfade 10
> transparency #2/4-9/0/12 75 target r
> show #13.11-12
> wait 60
> hide #13.11-12
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 90 center #2
> wait
> movie crossfade 10
> transparency #2/4-9/0/12 0 target r
> cartoon style modeHelix wrap
> wait 30
> view four 60
> wait 60
> movie crossfade 20
> select #2/m:30-34/6: 61-92 /6: 229-256/4: 35-47/8: 433-465
962 atoms, 989 bonds, 111 residues, 1 model selected
> select ~sel
107206 atoms, 109655 bonds, 24 pseudobonds, 13289 residues, 86 models selected
> perframe "transparency 100 sel target r" ranges 2.5,0.5 frames 50
> wait
wait requires a frame count argument unless motion is in progress
> show #2/m:30-34/6: 61-92 /6: 229-256/4: 35-47/8: 433-465 target a
> show #11,15,17,19 models
> surface dust #11-19 size 10
> transparency 70 target s
> wait
wait requires a frame count argument unless motion is in progress
> turn x 2 90 center #2/m:34
> wait
Error executing per-frame command 'transparency 100 sel target r': Expected a
collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels', 'models',
'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword
> movie crossfade 10
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4 quality highest
Movie saved to C:\Users\jason431/Desktop/RESCmovie/movie.mp4
executed movie.cxc
> hide sel & #!2 cartoons
> show sel & #!2 cartoons
> perframe "transparency 100 sel target r" ranges 2.5,0.5 frames 50
Error executing per-frame command 'transparency 100 sel target r': Expected a
collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels', 'models',
'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword
> perframe "transparency 100 sel" ranges 2.5,0.5 frames 50
Error executing per-frame command 'transparency 100 sel': Expected a
collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels', 'models',
'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword
> transparency 100 sel
Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword
> transparency 100 sel target r
Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword
> transparency sel 100 target r
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> windowsize 900 800
> hide #!2 atoms
> show #!2 cartoons
> graphics selection color white
> movie record supersample 2
> view onee
> hide models
> show #3-7 models
> transparency 0 target s
> hide atoms
> wait
wait requires a frame count argument unless motion is in progress
> show #13.1-8
> wait 60
> hide #13.1-8
> turn y 2 90 center #2
> wait
> show #13.9-10
> wait 60
> hide #13.9-10
> turn y 2 90 center #2
> wait
> movie crossfade 10
> show #2 models
> hide #2.1 models
> hide #3-7 models
> wait
wait requires a frame count argument unless motion is in progress
> show #13.1-8
> wait 60
> hide #13.1-8
> turn y 2 90 center #2
> wait
> show #13.9-10
> wait 60
> hide #13.9-10
> movie crossfade 10
> transparency #2/4-9/0/12 75 target r
> show #13.11-12
> wait 60
> hide #13.11-12
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 90 center #2
> wait
> movie crossfade 10
> transparency #2/4-9/0/12 0 target r
> cartoon style modeHelix wrap
> wait 30
> view four 60
> wait 60
> movie crossfade 20
> select #2/m:30-34/6: 61-92 /6: 229-256/4: 35-47/8: 433-465
962 atoms, 989 bonds, 111 residues, 1 model selected
> select ~sel
107206 atoms, 109655 bonds, 24 pseudobonds, 13289 residues, 86 models selected
> perframe "transparency sel 100 target r" ranges 2.5,0.5 frames 50
> hide sel
> wait
wait requires a frame count argument unless motion is in progress
> show #2/m:30-34/6: 61-92 /6: 229-256/4: 35-47/8: 433-465 target a
> show #11,15,17,19 models
> surface dust #11-19 size 10
> transparency 70 target s
> wait
wait requires a frame count argument unless motion is in progress
> turn x 2 90 center #2/m:34
> wait
> movie crossfade 10
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4 quality highest
Movie saved to C:\Users\jason431/Desktop/RESCmovie/movie.mp4
executed movie.cxc
> hide sel
> ui tool show "Side View"
> hide sel target r
> clear sel
Unknown command: clear sel
> select clear
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> windowsize 900 800
> hide #!2 atoms
> show #!2 cartoons
> graphics selection color white
> movie record supersample 2
> view onee
> hide models
> show #3-7 models
> transparency 0 target s
> hide atoms
> wait
wait requires a frame count argument unless motion is in progress
> show #13.1-8
> wait 60
> hide #13.1-8
> turn y 2 90 center #2
> wait
> show #13.9-10
> wait 60
> hide #13.9-10
> turn y 2 90 center #2
> wait
> movie crossfade 10
> show #2 models
> hide #2.1 models
> hide #3-7 models
> wait
wait requires a frame count argument unless motion is in progress
> show #13.1-8
> wait 60
> hide #13.1-8
> turn y 2 90 center #2
> wait
> show #13.9-10
> wait 60
> hide #13.9-10
> movie crossfade 10
> transparency #2/4-9/0/12 75 target r
> show #13.11-12
> wait 60
> hide #13.11-12
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 90 center #2
> wait
> movie crossfade 10
> transparency #2/4-9/0/12 0 target r
> cartoon style modeHelix wrap
> wait 30
> view four 60
> wait 60
> movie crossfade 20
> select #2/m:30-34/6: 61-92 /6: 229-256/4: 35-47/8: 433-465
962 atoms, 989 bonds, 111 residues, 1 model selected
> select ~sel
107206 atoms, 109655 bonds, 24 pseudobonds, 13289 residues, 86 models selected
> perframe "transparency sel 100 target r" ranges 2.5,0.5 frames 50
> hide sel target r
> select clear
> wait
wait requires a frame count argument unless motion is in progress
> show #2/m:30-34/6: 61-92 /6: 229-256/4: 35-47/8: 433-465 target a
> show #11,15,17,19 models
> surface dust #11-19 size 10
> transparency 70 target s
> wait
wait requires a frame count argument unless motion is in progress
> turn x 2 90 center #2/m:34
> wait
> movie crossfade 10
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4 quality highest
Movie saved to C:\Users\jason431/Desktop/RESCmovie/movie.mp4
executed movie.cxc
> view four
> trun x 90 center #2/m: 34
Unknown command: trun x 90 center #2/m: 34
> turn x 90 center #2/m: 34
> turn x 290 center #2/m: 34
> turn x 2 90 center #2/m: 34
> view four
> turn x 2 90 center #2/m: 34
[Repeated 4 time(s)]
> view name four
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> windowsize 900 800
> select clear
> hide #!2 atoms
> show #!2 cartoons
> graphics selection color white
> movie record supersample 2
> view onee
> hide models
> show #3-7 models
> transparency 0 target s
> hide atoms
> wait
wait requires a frame count argument unless motion is in progress
> show #13.1-8
> wait 60
> hide #13.1-8
> turn y 2 90 center #2
> wait
> show #13.9-10
> wait 60
> hide #13.9-10
> turn y 2 90 center #2
> wait
> movie crossfade 10
> show #2 models
> hide #2.1 models
> hide #3-7 models
> wait
wait requires a frame count argument unless motion is in progress
> show #13.1-8
> wait 60
> hide #13.1-8
> turn y 2 90 center #2
> wait
> show #13.9-10
> wait 60
> hide #13.9-10
> movie crossfade 10
> transparency #2/4-9/0/12 75 target r
> show #13.11-12
> wait 60
> hide #13.11-12
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 90 center #2
> wait
> movie crossfade 10
> transparency #2/4-9/0/12 0 target r
> cartoon style modeHelix wrap
> wait 30
> view four 60
> wait 60
> movie crossfade 20
> select #2/m:30-34/6: 61-92 /6: 229-256/4: 35-47/8: 433-465
962 atoms, 989 bonds, 111 residues, 1 model selected
> select ~sel
107206 atoms, 109655 bonds, 24 pseudobonds, 13289 residues, 86 models selected
> perframe "transparency sel 100 target r" ranges 2.5,0.5 frames 80
> hide sel target r
> select clear
> wait
wait requires a frame count argument unless motion is in progress
> show #2/m:30-34/6: 61-92 /6: 229-256/4: 35-47/8: 433-465 target a
> show #11,15,17,19 models
> surface dust #11-19 size 10
> transparency 70 target s
> wait
wait requires a frame count argument unless motion is in progress
> turn x 2 90 center #2/m:34
> wait
> movie crossfade 10
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4 quality highest
Movie saved to C:\Users\jason431/Desktop/RESCmovie/movie.mp4
executed movie.cxc
> view four
> select clear
> hide #!2 atoms
> show #!2 cartoons
> select #2/m
668 atoms, 752 bonds, 1 pseudobond, 31 residues, 2 models selected
> show sel cartoons
> select #2/m color #ff00ff
Expected a keyword
> transparency 0 All
> select clear
> hide #!11 models
> show #!11 models
> hide #!11 models
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> windowsize 900 800
> select clear
> hide #!2 atoms
> show #!2 cartoons
> transparency 0 All
> graphics selection color white
> movie record supersample 2
> view onee
> hide models
> show #3-7 models
> transparency 0 target s
> hide atoms
> wait
wait requires a frame count argument unless motion is in progress
> show #13.1-8
> wait 60
> hide #13.1-8
> turn y 2 90 center #2
> wait
> show #13.9-10
> wait 60
> hide #13.9-10
> turn y 2 90 center #2
> wait
> movie crossfade 10
> show #2 models
> hide #2.1 models
> hide #3-7 models
> wait
wait requires a frame count argument unless motion is in progress
> show #13.1-8
> wait 60
> hide #13.1-8
> turn y 2 90 center #2
> wait
> show #13.9-10
> wait 60
> hide #13.9-10
> movie crossfade 10
> transparency #2/4-9/0/12 75 target r
> show #13.11-12
> wait 60
> hide #13.11-12
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 90 center #2
> wait
> movie crossfade 10
> transparency #2/4-9/0/12 0 target r
> cartoon style modeHelix wrap
> wait 30
> view four 60
> wait 60
> movie crossfade 20
> select #2/m:30-34/6: 61-92 /6: 229-256/4: 35-47/8: 433-465
962 atoms, 989 bonds, 111 residues, 1 model selected
> select ~sel
107206 atoms, 109655 bonds, 24 pseudobonds, 13289 residues, 86 models selected
> perframe "transparency sel 100 target r" frames 80
> wait
wait requires a frame count argument unless motion is in progress
> hide sel target r
> select clear
> wait
wait requires a frame count argument unless motion is in progress
> show #2/m:30-34/6: 61-92 /6: 229-256/4: 35-47/8: 433-465 target a
> show #11,15,17,19 models
> surface dust #11-19 size 10
> transparency 70 target s
> wait
wait requires a frame count argument unless motion is in progress
> turn x 2 90 center #2/m:34
> wait
> movie crossfade 10
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4 quality highest
Movie saved to C:\Users\jason431/Desktop/RESCmovie/movie.mp4
executed movie.cxc
> show #!2 cartoons
> hide #!2 atoms
> view onee
> show #13.7 models
> hide #13.7 models
> hide #!13 models
> show #!13 models
> show #13.1 models
> show #13.1-12 target m
> turn y 2 90 center #2
> windowsize 900 800
> view onee
> turn y 2 90 center #2
> windowsize 900 850
> view onee
> windowsize 900 830
> turn y 2 90 center #2
> windowsize 900 835
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> windowsize 900 835
> select clear
> hide #!2 atoms
> show #!2 cartoons
> transparency 0 All
> graphics selection color white
> movie record supersample 2
> view onee
> hide models
> show #3-7 models
> transparency 0 target s
> hide atoms
> wait
wait requires a frame count argument unless motion is in progress
> show #13.1-8
> wait 60
> hide #13.1-8
> turn y 2 90 center #2
> wait
> show #13.9-10
> wait 60
> hide #13.9-10
> turn y 2 90 center #2
> wait
> movie crossfade 10
> show #2 models
> hide #2.1 models
> hide #3-7 models
> wait
wait requires a frame count argument unless motion is in progress
> show #13.1-8
> wait 60
> hide #13.1-8
> turn y 2 90 center #2
> wait
> show #13.9-10
> wait 60
> hide #13.9-10
> movie crossfade 10
> transparency #2/4-9/0/12 75 target r
> show #13.11-12
> wait 60
> hide #13.11-12
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 90 center #2
> wait
> movie crossfade 10
> transparency #2/4-9/0/12 0 target r
> cartoon style modeHelix wrap
> wait 30
> view four 60
> wait 60
> movie crossfade 20
> select #2/m:30-34/6: 61-92 /6: 229-256/4: 35-47/8: 433-465
962 atoms, 989 bonds, 111 residues, 1 model selected
> select ~sel
107206 atoms, 109655 bonds, 24 pseudobonds, 13289 residues, 86 models selected
> perframe "transparency sel 100 target r" frames 200
> wait
wait requires a frame count argument unless motion is in progress
> hide sel target r
> select clear
> wait
wait requires a frame count argument unless motion is in progress
> show #2/m:30-34/6: 61-92 /6: 229-256/4: 35-47/8: 433-465 target a
> show #11,15,17,19 models
> surface dust #11-19 size 10
> transparency 70 target s
> wait
wait requires a frame count argument unless motion is in progress
> turn x 2 90 center #2/m:34
> wait
> movie crossfade 10
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4 quality highest
Movie saved to C:\Users\jason431/Desktop/RESCmovie/movie.mp4
executed movie.cxc
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> windowsize 900 835
> select clear
> hide #!2 atoms
> show #!2 cartoons
> transparency 0 All
> graphics selection color white
> movie record supersample 2
> view onee
> hide models
> show #3-7 models
> transparency 0 target s
> hide atoms
> wait
wait requires a frame count argument unless motion is in progress
> show #13.1-8
> wait 60
> hide #13.1-8
> turn y 2 90 center #2
> wait
> show #13.9-10
> wait 60
> hide #13.9-10
> turn y 2 90 center #2
> wait
> movie crossfade 10
> show #2 models
> hide #2.1 models
> hide #3-7 models
> wait
wait requires a frame count argument unless motion is in progress
> show #13.1-8
> wait 60
> hide #13.1-8
> turn y 2 90 center #2
> wait
> show #13.9-10
> wait 60
> hide #13.9-10
> movie crossfade 10
> transparency #2/4-9/0/12 75 target r
> show #13.11-12
> wait 60
> hide #13.11-12
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 90 center #2
> wait
> movie crossfade 10
> transparency #2/4-9/0/12 0 target r
> cartoon style modeHelix wrap
> wait 30
> view four 60
> wait 60
> movie crossfade 20
> select #2/m:30-34/6: 61-92 /6: 229-256/4: 35-47/8: 433-465
962 atoms, 989 bonds, 111 residues, 1 model selected
> select ~sel
107206 atoms, 109655 bonds, 24 pseudobonds, 13289 residues, 86 models selected
> perframe "transparency sel 100 target r" frames 500
> wait
wait requires a frame count argument unless motion is in progress
> hide sel target r
> select clear
> wait
wait requires a frame count argument unless motion is in progress
> movei crossfade 10
Unknown command: movei crossfade 10
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> windowsize 900 835
> select clear
> hide #!2 atoms
> show #!2 cartoons
> transparency 0 All
> graphics selection color white
> movie record supersample 2
Already recording a movie
> movie stop
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> windowsize 900 835
> select clear
> hide #!2 atoms
> show #!2 cartoons
> transparency 0 All
> graphics selection color white
> movie record supersample 2
> view onee
> hide models
> show #3-7 models
> transparency 0 target s
> hide atoms
> wait
wait requires a frame count argument unless motion is in progress
> show #13.1-8
> wait 60
> hide #13.1-8
> turn y 2 90 center #2
> wait
> show #13.9-10
> wait 60
> hide #13.9-10
> turn y 2 90 center #2
> wait
> movie crossfade 10
> show #2 models
> hide #2.1 models
> hide #3-7 models
> wait
wait requires a frame count argument unless motion is in progress
> show #13.1-8
> wait 60
> hide #13.1-8
> turn y 2 90 center #2
> wait
> show #13.9-10
> wait 60
> hide #13.9-10
> movie crossfade 10
> transparency #2/4-9/0/12 75 target r
> show #13.11-12
> wait 60
> hide #13.11-12
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 90 center #2
> wait
> movie crossfade 10
> transparency #2/4-9/0/12 0 target r
> cartoon style modeHelix wrap
> wait 30
> view four 60
> wait 60
> movie crossfade 20
> select #2/m:30-34/6: 61-92 /6: 229-256/4: 35-47/8: 433-465
962 atoms, 989 bonds, 111 residues, 1 model selected
> select ~sel
107206 atoms, 109655 bonds, 24 pseudobonds, 13289 residues, 86 models selected
> perframe "transparency sel 100 target r" frames 500
> wait
wait requires a frame count argument unless motion is in progress
> hide sel target r
> select clear
> wait
wait requires a frame count argument unless motion is in progress
> movie crossfade 10
> show #2/m:30-34/6: 61-92 /6: 229-256/4: 35-47/8: 433-465 target a
> show #11,15,17,19 models
> surface dust #11-19 size 10
> transparency 70 target s
> wait
wait requires a frame count argument unless motion is in progress
> turn x 2 90 center #2/m:34
> wait
> movie crossfade 10
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4 quality highest
Movie saved to C:\Users\jason431/Desktop/RESCmovie/movie.mp4
executed movie.cxc
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> windowsize 900 835
> select clear
> hide #!2 atoms
> show #!2 cartoons
> transparency 0 All
> graphics selection color white
> movie record supersample 2
> view onee
> hide models
> show #3-7 models
> transparency 0 target s
> hide atoms
> wait
wait requires a frame count argument unless motion is in progress
> show #13.1-8
> wait 60
> hide #13.1-8
> turn y 2 90 center #2
> wait
> show #13.9-10
> wait 60
> hide #13.9-10
> turn y 2 90 center #2
> wait
> movie crossfade 10
> show #2 models
> hide #2.1 models
> hide #3-7 models
> wait
wait requires a frame count argument unless motion is in progress
> show #13.1-8
> wait 60
> hide #13.1-8
> turn y 2 90 center #2
> wait
> show #13.9-10
> wait 60
> hide #13.9-10
> movie crossfade 10
> transparency #2/4-9/0/12 75 target r
> show #13.11-12
> wait 60
> hide #13.11-12
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 90 center #2
> wait
> movie crossfade 10
> transparency #2/4-9/0/12 0 target r
> cartoon style modeHelix wrap
> wait 30
> view four 60
> wait 60
> movie crossfade 20
> select #2/m:30-34/6: 61-92 /6: 229-256/4: 35-47/8: 433-465
962 atoms, 989 bonds, 111 residues, 1 model selected
> select ~sel
107206 atoms, 109655 bonds, 24 pseudobonds, 13289 residues, 86 models selected
> perframe "transparency sel 100 target r" frames 500
> wait
wait requires a frame count argument unless motion is in progress
> hide sel target r
> select clear
> wait
wait requires a frame count argument unless motion is in progress
> show #2/m:30-34/6: 61-92 /6: 229-256/4: 35-47/8: 433-465 target a
> show #11,15,17,19 models
> surface dust #11-19 size 10
> transparency 70 target s
> wait
wait requires a frame count argument unless motion is in progress
> turn x 2 90 center #2/m:34
> wait
> movie crossfade 10
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4 quality highest
Movie saved to C:\Users\jason431/Desktop/RESCmovie/movie.mp4
executed movie.cxc
> view four
> view name four
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> windowsize 900 835
> select clear
> hide #!2 atoms
> show #!2 cartoons
> transparency 0 All
> graphics selection color white
> movie record supersample 2
> view onee
> hide models
> show #3-7 models
> transparency 0 target s
> hide atoms
> wait
wait requires a frame count argument unless motion is in progress
> show #13.1-8
> wait 60
> hide #13.1-8
> turn y 2 90 center #2
> wait
> show #13.9-10
> wait 60
> hide #13.9-10
> turn y 2 90 center #2
> wait
> movie crossfade 10
> show #2 models
> hide #2.1 models
> hide #3-7 models
> wait
wait requires a frame count argument unless motion is in progress
> show #13.1-8
> wait 60
> hide #13.1-8
> turn y 2 90 center #2
> wait
> show #13.9-10
> wait 60
> hide #13.9-10
> movie crossfade 10
> transparency #2/4-9/0/12 75 target r
> show #13.11-12
> wait 60
> hide #13.11-12
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 90 center #2
> wait
> movie crossfade 10
> transparency #2/4-9/0/12 0 target r
> cartoon style modeHelix wrap
> wait 30
> view four 60
> wait 60
> movie crossfade 20
> select #2/m:30-34/6: 61-92 /6: 229-256/4: 35-47/8: 433-465
962 atoms, 989 bonds, 111 residues, 1 model selected
> select ~sel
107206 atoms, 109655 bonds, 24 pseudobonds, 13289 residues, 86 models selected
> perframe "transparency sel 100 target r" frames 1000 interval 10
> wait
wait requires a frame count argument unless motion is in progress
> hide sel target r
> select clear
> wait
wait requires a frame count argument unless motion is in progress
> show #2/m:30-34/6: 61-92 /6: 229-256/4: 35-47/8: 433-465 target a
> show #11,15,17,19 models
> surface dust #11-19 size 10
> transparency 70 target s
> wait
wait requires a frame count argument unless motion is in progress
> turn x 2 90 center #2/m:34
> wait
> movie crossfade 10
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4 quality highest
Movie saved to C:\Users\jason431/Desktop/RESCmovie/movie.mp4
executed movie.cxc
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> windowsize 900 835
> select clear
> hide #!2 atoms
> show #!2 cartoons
> transparency 0 All
> graphics selection color white
> movie record supersample 2
> view onee
> hide models
> show #3-7 models
> transparency 0 target s
> hide atoms
> wait
wait requires a frame count argument unless motion is in progress
> show #13.1-8
> wait 60
> hide #13.1-8
> turn y 2 90 center #2
> wait
> show #13.9-10
> wait 60
> hide #13.9-10
> turn y 2 90 center #2
> wait
> movie crossfade 10
> show #2 models
> hide #2.1 models
> hide #3-7 models
> wait
wait requires a frame count argument unless motion is in progress
> show #13.1-8
> wait 60
> hide #13.1-8
> turn y 2 90 center #2
> wait
> show #13.9-10
> wait 60
> hide #13.9-10
> movie crossfade 10
> transparency #2/4-9/0/12 75 target r
> show #13.11-12
> wait 60
> hide #13.11-12
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 90 center #2
> wait
> movie crossfade 10
> transparency #2/4-9/0/12 0 target r
> cartoon style modeHelix wrap
> wait 30
> view four 60
> wait 60
> movie crossfade 20
> select #2/m:30-34/6: 61-92 /6: 229-256/4: 35-47/8: 433-465
962 atoms, 989 bonds, 111 residues, 1 model selected
> select ~sel
107206 atoms, 109655 bonds, 24 pseudobonds, 13289 residues, 86 models selected
> perframe "transparency sel 100 target r"
> wait 200
> ~perframe
> wait
wait requires a frame count argument unless motion is in progress
> hide sel target r
> select clear
> wait
wait requires a frame count argument unless motion is in progress
> show #2/m:30-34/6: 61-92 /6: 229-256/4: 35-47/8: 433-465 target a
> show #11,15,17,19 models
> surface dust #11-19 size 10
> transparency 70 target s
> wait
wait requires a frame count argument unless motion is in progress
> turn x 2 90 center #2/m:34
> wait
> movie crossfade 10
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4 quality highest
Movie saved to C:\Users\jason431/Desktop/RESCmovie/movie.mp4
executed movie.cxc
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> windowsize 900 835
> select clear
> hide #!2 atoms
> show #!2 cartoons
> transparency 0 All
> graphics selection color white
> movie record supersample 2
> view onee
> hide models
> show #3-7 models
> transparency 0 target s
> hide atoms
> wait
wait requires a frame count argument unless motion is in progress
> show #13.1-8
> wait 60
> hide #13.1-8
> turn y 2 90 center #2
> wait
> show #13.9-10
> wait 60
> hide #13.9-10
> turn y 2 90 center #2
> wait
> movie crossfade 10
> show #2 models
> hide #2.1 models
> hide #3-7 models
> wait
wait requires a frame count argument unless motion is in progress
> show #13.1-8
> wait 60
> hide #13.1-8
> turn y 2 90 center #2
> wait
> show #13.9-10
> wait 60
> hide #13.9-10
> movie crossfade 10
> transparency #2/4-9/0/12 75 target r
> show #13.11-12
> wait 60
> hide #13.11-12
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2 90 center #2
> wait
> movie crossfade 10
> transparency #2/4-9/0/12 0 target r
> cartoon style modeHelix wrap
> wait 30
> view four 60
> wait 60
> select #2/m:30-34/6: 61-92 /6: 229-256/4: 35-47/8: 433-465
962 atoms, 989 bonds, 111 residues, 1 model selected
> select ~sel
107206 atoms, 109655 bonds, 24 pseudobonds, 13289 residues, 86 models selected
> perframe "transparency sel 100 target r" frames 100
> wait
wait requires a frame count argument unless motion is in progress
> movie crossfade 20
> hide sel target r
> select clear
> wait
wait requires a frame count argument unless motion is in progress
> show #2/m:30-34/6: 61-92 /6: 229-256/4: 35-47/8: 433-465 target a
> show #11,15,17,19 models
> surface dust #11-19 size 10
> transparency 70 target s
> wait
wait requires a frame count argument unless motion is in progress
> turn x 2 90 center #2/m:34
> wait
> movie crossfade 10
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4 quality highest
Movie saved to C:\Users\jason431/Desktop/RESCmovie/movie.mp4
executed movie.cxc
> show #!2 cartoons
> show #!2 atoms
> hide #!2 atoms
> view onee
[Repeated 1 time(s)]
> turn y 1.5 90 center #2
> view onee
> turn y 1.3 90 center #2
> view onee
> turn y 1.1 90 center #2
> view onee
> turn y 2 90 center #2
> turn y 3 90 center #2
> view onee
> turn y 90 2 center #2
> turn y 90 10 center #2
> turn y 1 180 center #2
> turn y 3 60 center #2
> view onee
> turn y 3 60 center #2
> turn y 2.5 36 center #2
> turn y 2.5 72 center #2
> view onee
> turn y 2.5 72 center #2
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> windowsize 900 835
> select clear
> hide #!2 atoms
> show #!2 cartoons
> transparency 0 All
> graphics selection color white
> movie record supersample 2
> view onee
> hide models
> show #3-7 models
> transparency 0 target s
> hide atoms
> wait
wait requires a frame count argument unless motion is in progress
> show #13.1-8
> wait 60
> hide #13.1-8
> turn y 2.5 72 center #2
> wait
> show #13.9-10
> wait 60
> hide #13.9-10
> turn y 2.5 72 center #2
> wait
> movie crossfade 10
> show #2 models
> hide #2.1 models
> hide #3-7 models
> wait
wait requires a frame count argument unless motion is in progress
> show #13.1-8
> wait 60
> hide #13.1-8
> turn y 2.5 72 center #2
> wait
> show #13.9-10
> wait 60
> hide #13.9-10
> movie crossfade 10
> transparency #2/4-9/0/12 75 target r
> show #13.11-12
> wait 60
> hide #13.11-12
> wait
wait requires a frame count argument unless motion is in progress
> turn y 2.5 72 center #2
> wait
> movie crossfade 10
> transparency #2/4-9/0/12 0 target r
> cartoon style modeHelix wrap
> wait 30
> view four 60
> wait 60
> select #2/m:30-34/6: 61-92 /6: 229-256/4: 35-47/8: 433-465
962 atoms, 989 bonds, 111 residues, 1 model selected
> select ~sel
107206 atoms, 109655 bonds, 24 pseudobonds, 13289 residues, 86 models selected
> perframe "transparency sel 100 target r" frames 100
> wait
wait requires a frame count argument unless motion is in progress
> movie crossfade 20
> hide sel target r
> select clear
> wait
wait requires a frame count argument unless motion is in progress
> show #2/m:30-34/6: 61-92 /6: 229-256/4: 35-47/8: 433-465 target a
> show #11,15,17,19 models
> surface dust #11-19 size 10
> transparency 70 target s
> wait
wait requires a frame count argument unless motion is in progress
> turn x 2.5 72 center #2/m:34
> wait
> movie crossfade 10
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4 quality highest
Movie saved to C:\Users\jason431/Desktop/RESCmovie/movie.mp4
executed movie.cxc
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> windowsize 900 835
> select clear
> hide #!2 atoms
> show #!2 cartoons
> transparency 0 All
> graphics selection color white
> movie record supersample 2
> view onee
> hide models
> show #3-7 models
> transparency 0 target s
> hide atoms
> wait
wait requires a frame count argument unless motion is in progress
> show #13.1-8
> wait 60
> hide #13.1-8
> turn y 3 60 center #2
> wait
> show #13.9-10
> wait 60
> hide #13.9-10
> turn y 3 60 center #2
> wait
> movie crossfade 10
> show #2 models
> hide #2.1 models
> hide #3-7 models
> wait
wait requires a frame count argument unless motion is in progress
> show #13.1-8
> wait 60
> hide #13.1-8
> turn y 3 60 center #2
> wait
> show #13.9-10
> wait 60
> hide #13.9-10
> movie crossfade 10
> transparency #2/4-9/0/12 75 target r
> show #13.11-12
> wait 60
> hide #13.11-12
> wait
wait requires a frame count argument unless motion is in progress
> turn y 3 60 center #2
> wait
> movie crossfade 10
> transparency #2/4-9/0/12 0 target r
> cartoon style modeHelix wrap
> wait 30
> view four 60
> wait 60
> select #2/m:30-34/6: 61-92 /6: 229-256/4: 35-47/8: 433-465
962 atoms, 989 bonds, 111 residues, 1 model selected
> select ~sel
107206 atoms, 109655 bonds, 24 pseudobonds, 13289 residues, 86 models selected
> perframe "transparency sel 100 target r" frames 100
> wait
wait requires a frame count argument unless motion is in progress
> movie crossfade 20
> hide sel target r
> select clear
> wait
wait requires a frame count argument unless motion is in progress
> show #2/m:30-34/6: 61-92 /6: 229-256/4: 35-47/8: 433-465 target a
> show #11,15,17,19 models
> surface dust #11-19 size 10
> transparency 70 target s
> wait
wait requires a frame count argument unless motion is in progress
> turn x 3 60 center #2/m:34
> wait
> movie crossfade 10
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4 quality highest
Movie saved to C:\Users\jason431/Desktop/RESCmovie/movie.mp4
executed movie.cxc
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> windowsize 900 835
> select clear
> hide #!2 atoms
> show #!2 cartoons
> transparency 0 All
> graphics selection color white
> movie record supersample 2
> view onee
> hide models
> show #3-7 models
> transparency 0 target s
> hide atoms
> wait
wait requires a frame count argument unless motion is in progress
> show #13.1-8
> wait 60
> hide #13.1-8
> turn y 4.5 40 center #2
> wait
> show #13.9-10
> wait 60
> hide #13.9-10
> turn y 4.5 40 center #2
> wait
> movie crossfade 10
> show #2 models
> hide #2.1 models
> hide #3-7 models
> wait
wait requires a frame count argument unless motion is in progress
> show #13.1-8
> wait 60
> hide #13.1-8
> turn y 4.5 40 center #2
> wait
> show #13.9-10
> wait 60
> hide #13.9-10
> movie crossfade 10
> transparency #2/4-9/0/12 75 target r
> show #13.11-12
> wait 60
> hide #13.11-12
> wait
wait requires a frame count argument unless motion is in progress
> turn y 4.5 40 center #2
> wait
> movie crossfade 10
> transparency #2/4-9/0/12 0 target r
> cartoon style modeHelix wrap
> wait 30
> view four 60
> wait 60
> select #2/m:30-34/6: 61-92 /6: 229-256/4: 35-47/8: 433-465
962 atoms, 989 bonds, 111 residues, 1 model selected
> select ~sel
107206 atoms, 109655 bonds, 24 pseudobonds, 13289 residues, 86 models selected
> perframe "transparency sel 100 target r" frames 100
> wait
wait requires a frame count argument unless motion is in progress
> movie crossfade 20
> hide sel target r
> select clear
> wait
wait requires a frame count argument unless motion is in progress
> show #2/m:30-34/6: 61-92 /6: 229-256/4: 35-47/8: 433-465 target a
> show #11,15,17,19 models
> surface dust #11-19 size 10
> transparency 70 target s
> wait
wait requires a frame count argument unless motion is in progress
> turn x 4.5 40 center #2/m:34
> wait
> movie crossfade 10
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4 quality highest
Movie saved to C:\Users\jason431/Desktop/RESCmovie/movie.mp4
executed movie.cxc
> save C:/Users/jason431/Desktop/RESCmovie/rescb-17.cxs includeMaps true
——— End of log from Mon May 30 19:09:45 2022 ———
opened ChimeraX session
> hide #!2 models
> show #!2 models
> show #!2 cartoons
> hide #!13 models
> view three
> view four
> view three
[Repeated 1 time(s)]
> windowsize 900 835
> view three
> view name three
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> windowsize 900 835
> select clear
> hide #!2 atoms
> show #!2 cartoons
> transparency 0 All
> graphics selection color white
> movie record supersample 2
> view onee
> hide models
> show #3-7 models
> transparency 0 target s
> hide atoms
> wait
wait requires a frame count argument unless motion is in progress
> show #13.1-8
> wait 60
> hide #13.1-8
> turn y 4.5 40 center #2
> wait
> show #13.9-10
> wait 60
> hide #13.9-10
> turn y 4.5 40 center #2
> wait
> movie crossfade 10
> show #2 models
> hide #2.1 models
> hide #3-7 models
> wait
wait requires a frame count argument unless motion is in progress
> show #13.1-8
> wait 60
> hide #13.1-8
> turn y 4.5 40 center #2
> wait
> show #13.9-10
> wait 60
> hide #13.9-10
> movie crossfade 10
> transparency #2/4-9/0/12 75 target r
> show #13.11-12
> wait 60
> hide #13.11-12
> wait
wait requires a frame count argument unless motion is in progress
> turn y 4.5 40 center #2
> wait
> movie crossfade 10
> transparency #2/4-9/0/12 0 target r
> cartoon style modeHelix wrap
> wait 30
> view four 60
> wait 60
> select #2/m:30-34/6: 61-92 /6: 229-256/4: 35-47/8: 433-465
962 atoms, 989 bonds, 111 residues, 1 model selected
> select ~sel
107206 atoms, 109655 bonds, 24 pseudobonds, 13289 residues, 86 models selected
> perframe "transparency sel 100 target r" frames 100
> wait
wait requires a frame count argument unless motion is in progress
> movie crossfade 20
> hide sel target r
> select clear
> wait
wait requires a frame count argument unless motion is in progress
> show #2/m:30-34/6: 61-92 /6: 229-256/4: 35-47/8: 433-465 target a
> show #11,15,17,19 models
> surface dust #11-19 size 10
> transparency 70 target s
> wait
wait requires a frame count argument unless motion is in progress
> turn x 4.5 40 center #2/m:34
> wait
> movie crossfade 10
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4 quality highest
Movie saved to C:\Users\jason431/Desktop/RESCmovie/movie.mp4
executed movie.cxc
> view three 60
> view one
> view onee
> select clear
> show #!2 cartoons
> view three 60
> open C:\Users\jason431/Desktop/RESCmovie/movie.cxc
> windowsize 900 835
> select clear
> hide #!2 atoms
> show #!2 cartoons
> transparency 0 All
> graphics selection color white
> movie record supersample 2
> view onee
> hide models
> show #3-7 models
> transparency 0 target s
> hide atoms
> wait
wait requires a frame count argument unless motion is in progress
> show #13.1-8
> wait 60
> hide #13.1-8
> turn y 4.5 40 center #2
> wait
> show #13.9-10
> wait 60
> hide #13.9-10
> turn y 4.5 40 center #2
> wait
> movie crossfade 10
> show #2 models
> hide #2.1 models
> hide #3-7 models
> wait
wait requires a frame count argument unless motion is in progress
> show #13.1-8
> wait 60
> hide #13.1-8
> turn y 4.5 40 center #2
> wait
> show #13.9-10
> wait 60
> hide #13.9-10
> movie crossfade 10
> transparency #2/4-9/0/12 75 target r
> show #13.11-12
> wait 60
> hide #13.11-12
> wait
wait requires a frame count argument unless motion is in progress
> turn y 4.5 40 center #2
> wait
> movie crossfade 10
> transparency #2/4-9/0/12 0 target r
> cartoon style modeHelix wrap
> wait 30
> view three 60
> wait 60
> select #2/m:30-34/6: 61-92 /6: 229-256/4: 35-47/8: 433-465
962 atoms, 989 bonds, 111 residues, 1 model selected
> select ~sel
107206 atoms, 109655 bonds, 24 pseudobonds, 13289 residues, 86 models selected
> perframe "transparency sel 100 target r" frames 100
> wait
wait requires a frame count argument unless motion is in progress
> movie crossfade 20
> hide sel target r
> select clear
> wait
wait requires a frame count argument unless motion is in progress
> show #2/m:30-34/6: 61-92 /6: 229-256/4: 35-47/8: 433-465 target a
> show #11,15,17,19 models
> surface dust #11-19 size 10
> transparency 70 target s
> wait
wait requires a frame count argument unless motion is in progress
> turn x 4.5 40 center #2/m:34
> wait
> movie crossfade 10
> movie encode C:\Users\jason431/Desktop/RESCmovie/movie.mp4 quality highest
Movie saved to C:\Users\jason431/Desktop/RESCmovie/movie.mp4
executed movie.cxc
> save C:/Users/jason431/Desktop/RESCmovie/rescb-18.cxs includeMaps true
> windowsize 900 835
> select clear
> hide #!2 atoms
> show #!2 cartoons
> transparency 0 All
> graphics selection color white
> view onee
> view one
> view onee
> view list
Named views: four, one, onee, three, two
> view list
Named views: four, one, onee, three, two
> view delete one
> view lsit
Expected an objects specifier or a view name or a keyword
> view list
Named views: four, onee, three, two
> view delete one
> view list
Named views: four, onee, three, two
> view one
Expected an objects specifier or a view name or a keyword
> view onee
> hide #!15 models
> show #!15 models
> hide #!15 models
> show #!15 models
> hide #!15 models
> show #!15 models
> close #15,17,19
> show #!1 models
> hide #!1 models
> close #3-7
> show #!8 models
> hide #!8 models
> hide #!2 models
> show #!2 models
> close #10-11
> hide #!13 models
> close #9
> show #!8 models
> hide #!8 models
> show #!8 models
> show #8.1 models
> hide #8.1 models
> show #8.1 models
> select clear
> show #!2,8 atoms
> show #!2,8 cartoons
> hide #!2,8 atoms
> select clear
> hide #!8 models
> show #!8 models
> close #8
> close #1
> rename #2 id 1
> rename #13 id 2
> open "C:/Users/jason431/Desktop/RESC Figures/Maps/RESC A without RNA/RESC-
> A_new.mrc"
Opened RESC-A_new.mrc as #3, grid size 256,256,256, pixel 1.06, shown at level
0.0141, step 1, values float32
> close #3
> open "C:/Users/jason431/Desktop/RESC Figures/Models/RESC A with RNA/RESCA-
> RNA-coot-0_real_space_refined_002-coot-2 (1).pdb"
Chain information for RESCA-RNA-coot-0_real_space_refined_002-coot-2 (1).pdb
#3
---
Chain | Description
1 | No description available
2 | No description available
3 | No description available
4 | No description available
5 | No description available
6 | No description available
g | No description available
m | No description available
> select clear
> hide atoms
> show cartoons
> struts #3
Created 12432 struts for #3, max length 7, max loop length 30
> hide atoms
> show cartoons
> preset cartoons/nucleotides cylinders/stubs
Changed 20653 atom styles
Preset expands to these ChimeraX commands:
show nucleic
hide protein|solvent|H
surf hide
style (protein|nucleic|solvent) & @@draw_mode=0 stick
cartoon
cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20
cartoon style ~(nucleic|strand) x round
cartoon style (nucleic|strand) x rect
cartoon style protein modeh tube rad 2 sides 24 thick 0.6
cartoon style nucleic x round width 1.6 thick 1.6
nucleotides stubs
> preset cartoons/nucleotides ribbons/slabs
Changed 0 atom styles
Preset expands to these ChimeraX commands:
show nucleic
hide protein|solvent|H
surf hide
style (protein|nucleic|solvent) & @@draw_mode=0 stick
cartoon
cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20
cartoon style ~(nucleic|strand) x round
cartoon style (nucleic|strand) x rect
nucleotides tube/slab shape box
> preset cartoons/nucleotides cylinders/stubs
Changed 0 atom styles
Preset expands to these ChimeraX commands:
show nucleic
hide protein|solvent|H
surf hide
style (protein|nucleic|solvent) & @@draw_mode=0 stick
cartoon
cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20
cartoon style ~(nucleic|strand) x round
cartoon style (nucleic|strand) x rect
cartoon style protein modeh tube rad 2 sides 24 thick 0.6
cartoon style nucleic x round width 1.6 thick 1.6
nucleotides stubs
> undo
[Repeated 5 time(s)]
> ui mousemode right "translate selected models"
> select #4
12432 pseudobonds, 1 model selected
> close #4
> select #3
20653 atoms, 21097 bonds, 10 pseudobonds, 2567 residues, 2 models selected
> view matrix models #3,1,0,0,-16.872,0,1,0,108.87,0,0,1,8.3572
> select clear
> color #3/1 #37BC9B
> color #3/2 #aa5500
> color #3/3 #ED5565
> color #3/4 #1e824c
> color #3/5 #FC6E51
> color #3/6 #5D9CEC
> color #3/m #ff0000
> color #3/g #ff0000
> select #3/g:20
22 atoms, 24 bonds, 1 residue, 1 model selected
> select add #3/m:7
42 atoms, 45 bonds, 2 residues, 1 model selected
> select up
776 atoms, 866 bonds, 37 residues, 1 model selected
> color sel orange red
> ui tool show "Color Actions"
> color sel #ff0000ff
> color sel #e10000ff
> color sel #d80000ff
> color sel #fc0000ff
> color sel #ff0000ff
> color sel #ff3582ff
> color sel #ff357cff
> color sel #ff3033ff
> color sel #ff1d21ff
> color sel #ff1115ff
> color sel #ff070bff
> color sel #ff080cff
> color sel #ff3437ff
> color sel #ff575aff
> color sel #ff6b6dff
> color sel #ff7c7eff
> color sel #ff7d7fff
> color sel #ff7072ff
> color sel #ff6c6eff
> color sel #ff6164ff
> color sel #ff585bff
> color sel #ff4f52ff
> color sel #ff4b4eff
> color sel #ff494cff
> color sel #ff4548ff
> color sel #ff3437ff
> color sel #ff373aff
> color sel #ff4043ff
> color sel #ff5053ff
> color sel #ff5a5dff
> color sel #ff5d60ff
> color sel #ff6063ff
> color sel #ff6164ff
> color sel #ff6a6cff
> color sel #ff6f71ff
> color sel #ff6e70ff
> color sel #ff6164ff
> color sel #ff3e41ff
> color sel #ff3c3fff
> color sel #ff383bff
> color sel #ff3336ff
> color sel #ff2e31ff
> color sel #ff2c30ff
> color sel #ff2a2eff
> color sel #aa0000ff
> color sel #ff0000ff
> color sel #55aa00ff
> color sel #ff5500ff
> color sel #ff0000ff
> color sel #1ecbffff
> color sel #1dfff0ff
> color sel #ff1818ff
> color sel #ff2525ff
> color sel #ff3737ff
> color sel #ff4242ff
> color sel #ff4343ff
> color sel #ff4545ff
> color sel #ff4747ff
> color sel #ff4949ff
> color sel #ff4a4aff
> color sel #ff4949ff
> color sel #ff3e3eff
> color sel #ff3a3aff
> color sel #ff3838ff
> color sel #ff3939ff
> color sel #ff4141ff
> color sel #ff6060ff
> color sel #ff6565ff
> color sel #ff6666ff
> color sel #ff6969ff
> color sel #b94c4cff
> color sel #ba4d4dff
> color sel #c85252ff
> color sel #dc5b5bff
> color sel #e35d5dff
> color sel #ec6161ff
> color sel #ef6262ff
> color sel #eb6161ff
> color sel #e35d5dff
> color sel #e15d5dff
> color sel #de5b5bff
> color sel #df5c5cff
> color sel #ee6262ff
> color sel #ff6969ff
> color sel #aa00ffff
> color sel #d502ffff
> color sel #d901ffff
> color sel #ff00f2ff
> color sel #ff00e6ff
> color sel #ff00ddff
> color sel #ff00d4ff
> color sel #ff009dff
> color sel #ff0088ff
> color sel #ff0084ff
> color sel #ff0073ff
> color sel #ff0051ff
> color sel #ff004cff
> color sel #ff002fff
> color sel #ff0004ff
> color sel #ff0011ff
> color sel #ff0059ff
> color sel #ff0084ff
> color sel #ff00ffff
> color sel #ff55ffff
> color sel #ff557fff
> color sel #ff3967ff
> select clear
> mmaker #3/5-6 to #2/5-6
No 'to' model specified
> mmaker #3/5 to #2/5
No 'to' model specified
> mmaker #3/5-6 to #1/5-6
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker RESCs-B_RNA-coot-7-chimerax.pdb, chain 6 (#1) with RESCA-RNA-
coot-0_real_space_refined_002-coot-2 (1).pdb, chain 6 (#3), sequence alignment
score = 1945.3
RMSD between 221 pruned atom pairs is 1.000 angstroms; (across all 427 pairs:
3.809)
> undo
> ui mousemode right "rotate selected models"
> select #3
20653 atoms, 21097 bonds, 10 pseudobonds, 2567 residues, 2 models selected
> select clear
> mmaker #3 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker RESCs-B_RNA-coot-7-chimerax.pdb, chain 6 (#1) with RESCA-RNA-
coot-0_real_space_refined_002-coot-2 (1).pdb, chain 6 (#3), sequence alignment
score = 1945.3
RMSD between 221 pruned atom pairs is 1.000 angstroms; (across all 427 pairs:
3.809)
> select #3
20653 atoms, 21097 bonds, 10 pseudobonds, 2567 residues, 2 models selected
> ui mousemode right "translate selected models"
> ui mousemode right "rotate selected models"
> view matrix models
> #3,0.92698,0.33524,-0.16826,7.0374,-0.3038,0.93412,0.18741,9.9902,0.22001,-0.12261,0.96776,-30.273
> ui mousemode right "translate selected models"
> view matrix models
> #3,0.92698,0.33524,-0.16826,-19.015,-0.3038,0.93412,0.18741,14.953,0.22001,-0.12261,0.96776,-22.927
> view onee
> view matrix models
> #3,0.92698,0.33524,-0.16826,-18.005,-0.3038,0.93412,0.18741,141.13,0.22001,-0.12261,0.96776,-26.449
> view onee
[Repeated 1 time(s)]
> ui mousemode right "rotate selected models"
> ui mousemode right "translate selected models"
> ~select #3
Nothing selected
> select #3
20653 atoms, 21097 bonds, 10 pseudobonds, 2567 residues, 2 models selected
> graphics selection color black
> view matrix models
> #3,0.92698,0.33524,-0.16826,-18.004,-0.3038,0.93412,0.18741,161.32,0.22001,-0.12261,0.96776,-26.453
> view matrix models
> #3,0.92698,0.33524,-0.16826,-17.593,-0.3038,0.93412,0.18741,165.58,0.22001,-0.12261,0.96776,-27.885
> ui tool show "Side View"
> select clear
> cartoon style nucleic width 1.6 thickness 1.6
> undo
> cartoon style nucleic width 3 thickness 1.5
> select clear
> nucleic backbone tubes
Unknown command: nucleic backbone tubes
> nucleic xsection oval
Unknown command: nucleic xsection oval
> nucleic xsection oval
Unknown command: nucleic xsection oval
> cartoon style nucleic width 3 thickness 1.5 xsection oval
> select clear
> save C:/Users/jason431/Desktop/RESCmovie/tile.cxs includeMaps true
——— End of log from Mon May 30 20:03:06 2022 ———
opened ChimeraX session
> select #3
20653 atoms, 21097 bonds, 10 pseudobonds, 2567 residues, 2 models selected
> view matrix models
> #3,0.92698,0.33524,-0.16826,-23.192,-0.3038,0.93412,0.18741,-130.3,0.22001,-0.12261,0.96776,-8.3624
> view matrix models
> #3,0.92698,0.33524,-0.16826,-24.049,-0.3038,0.93412,0.18741,-143.69,0.22001,-0.12261,0.96776,-5.375
> select clear
> view name one
> view delete onee
> setattr #3/m c chain_id g
Assigning chain_id attribute to 1 item
> split #1 chains
Split RESCs-B_RNA-coot-7-chimerax.pdb (#1) into 10 models
Chain information for RESCs-B_RNA-coot-7-chimerax.pdb 0 #1.1
---
Chain | Description
0 | No description available
Chain information for RESCs-B_RNA-coot-7-chimerax.pdb 12 #1.2
---
Chain | Description
12 | No description available
Chain information for RESCs-B_RNA-coot-7-chimerax.pdb 4 #1.3
---
Chain | Description
4 | No description available
Chain information for RESCs-B_RNA-coot-7-chimerax.pdb 5 #1.4
---
Chain | Description
5 | No description available
Chain information for RESCs-B_RNA-coot-7-chimerax.pdb 6 #1.5
---
Chain | Description
6 | No description available
Chain information for RESCs-B_RNA-coot-7-chimerax.pdb 7 #1.6
---
Chain | Description
7 | No description available
Chain information for RESCs-B_RNA-coot-7-chimerax.pdb 8 #1.7
---
Chain | Description
8 | No description available
Chain information for RESCs-B_RNA-coot-7-chimerax.pdb 9 #1.8
---
Chain | Description
9 | No description available
Chain information for RESCs-B_RNA-coot-7-chimerax.pdb g #1.9
---
Chain | Description
g | No description available
Chain information for RESCs-B_RNA-coot-7-chimerax.pdb m #1.10
---
Chain | Description
m | No description available
> split #3 chains
Split RESCA-RNA-coot-0_real_space_refined_002-coot-2 (1).pdb (#3) into 7
models
Chain information for RESCA-RNA-coot-0_real_space_refined_002-coot-2 (1).pdb 1
#3.1
---
Chain | Description
1 | No description available
Chain information for RESCA-RNA-coot-0_real_space_refined_002-coot-2 (1).pdb 2
#3.2
---
Chain | Description
2 | No description available
Chain information for RESCA-RNA-coot-0_real_space_refined_002-coot-2 (1).pdb 3
#3.3
---
Chain | Description
3 | No description available
Chain information for RESCA-RNA-coot-0_real_space_refined_002-coot-2 (1).pdb 4
#3.4
---
Chain | Description
4 | No description available
Chain information for RESCA-RNA-coot-0_real_space_refined_002-coot-2 (1).pdb 5
#3.5
---
Chain | Description
5 | No description available
Chain information for RESCA-RNA-coot-0_real_space_refined_002-coot-2 (1).pdb 6
#3.6
---
Chain | Description
6 | No description available
Chain information for RESCA-RNA-coot-0_real_space_refined_002-coot-2 (1).pdb g
#3.7
---
Chain | Description
g | No description available
> preset cartoons/nucleotides cylinders/stubs
Changed 20653 atom styles
Preset expands to these ChimeraX commands:
show nucleic
hide protein|solvent|H
surf hide
style (protein|nucleic|solvent) & @@draw_mode=0 stick
cartoon
cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20
cartoon style ~(nucleic|strand) x round
cartoon style (nucleic|strand) x rect
cartoon style protein modeh tube rad 2 sides 24 thick 0.6
cartoon style nucleic x round width 1.6 thick 1.6
nucleotides stubs
> cartoon style nucleic width 3 thickness 1.5 xsection oval
> save C:/Users/jason431/Desktop/RESCmovie/tile-2.cxs includeMaps true
> struts #1
Created 15834 struts for #1, max length 7, max loop length 30
> struts #3
Created 11953 struts for #3, max length 7, max loop length 30
> close #4-5
> hide cartoons
> show cartoons
> hide atoms
> cartoon style nucleic width 3 thickness 1.5 xsection oval
> save C:/Users/jason431/Desktop/RESCmovie/tile-3.cxs includeMaps true
——— End of log from Mon May 30 20:15:08 2022 ———
opened ChimeraX session
> open C:/Users/jason431/Desktop/RESCmovie/tile.pdb
Summary of feedback from opening C:/Users/jason431/Desktop/RESCmovie/tile.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 ALA10 118
LEU10 140 1 23
Start residue of secondary structure not found: HELIX 2 2 GLN10 155 THR10 182
1 28
Start residue of secondary structure not found: HELIX 3 3 LEU10 185 ARG10 188
1 4
Start residue of secondary structure not found: HELIX 4 4 HIS10 192 ASP10 208
1 17
Start residue of secondary structure not found: HELIX 5 5 GLU10 212 ASP10 232
1 21
310 messages similar to the above omitted
Chain information for tile.pdb
---
Chain | Description
4.11/1 | No description available
4.1/10 | No description available
4.2/12 | No description available
4.12/2 | No description available
4.13/3 | No description available
4.3/4 | No description available
4.14/4 | No description available
4.4/5 | No description available
4.5/6 | No description available
4.6/7 | No description available
4.7/8 | No description available
4.8/9 | No description available
4.9/g | No description available
4.15/g | No description available
4.10/m | No description available
> view one
> color #4/1 #37BC9B
> color #4/2 #aa5500
> color #4/3 #ED5565
> color #4/4 #1e824c
> color #4/5 #FC6E51
> color #4/6 #5D9CEC
> color #4/m #ff0000
> color #4/g #ff0000
> hide atoms
> select #4
42396 atoms, 43362 bonds, 11 pseudobonds, 5244 residues, 22 models selected
> view matrix models #4,1,0,0,15.767,0,1,0,-301.41,0,0,1,-54.979
> view one
> view matrix models #4,1,0,0,16.101,0,1,0,-291.1,0,0,1,-56.144
> select clear
> view name two
> hide #4.15 models
> show #4.15 models
> hide #4.15 models
> show #4.15 models
> morph #1.1-10,#4.1-10 frames 20 play False
Missing or invalid "structures" argument: only initial part "#1.1-10" of atom
specifier valid
> morph #1.1-10,4.1-10 frames 20 play false
Require at least 2 structures for morph
> morph #1.1-10,4.1-10 frames 20 play false
Require at least 2 structures for morph
> morph #1,4 frames 20 play false
No atoms matched
> morph #1.1,4.1 frames 20 play false
Require at least 2 structures for morph
> morph #1.1,4.1 frames 20 play false
Require at least 2 structures for morph
> morph #1.1,4.1 frames 20 play false
Require at least 2 structures for morph
> morph #1/0,4/10 frames 20 play false
Computed 21 frame morph #5
> show #!1.1 models
> color #5 red transparency 0
> color #5 black transparency 0
> close #5
> morph #1/0,4.1/10 frames 20 play False
Missing or invalid "structures" argument: only initial part "#1/0,4" of atom
specifier valid
> morph #1,4 frames 20 play false
No atoms matched
> morph #1/5,4/5 frames 20 play false
Computed 21 frame morph #5
> close #5
> morph #1/5,4.4/5 frames 20 play False
Missing or invalid "structures" argument: only initial part "#1/5,4" of atom
specifier valid
> morph #1.5,4.5 frames 20 play false
Require at least 2 structures for morph
> morph #1/5,4/5 frames 20 play false
Computed 21 frame morph #5
> close #5
> show #1.4 models
> show #1.3 models
> morph #1/5,4/5 frames 20 play false
Computed 21 frame morph #5
> close #5
> morph #1/5#4/5 frames 20 play false same true
Computed 21 frame morph #5
> show #4.4 models
> hide #4.4 models
> close #5
> morph #1#4 frames 20 play false same true
No atoms matched
> morph #1,#4 frames 20 play False same true
Missing or invalid "structures" argument: only initial part "#1" of atom
specifier valid
> morph #1/0,4-9,12,g,m#4 frames 20 play false same true
No atoms matched
> morph #1/0,4-9,12,g,m#40,4-9,12,g,m frames 20 play False same true
Missing or invalid "structures" argument: only initial part
"#1/0,4-9,12,g,m#40,4-9,12" of atom specifier valid
> morph #1/0,4-9,12,g,m#4/0,4-9,12,g,m frames 20 play false same true
No atoms matched
> morph #1/0#4/0 frames 20 play false same true
Require at least 2 structures for morph
> morph #1/0,#4/0 frames 20 play False same true
Missing or invalid "structures" argument: only initial part "#1/0" of atom
specifier valid
> morph #1/5,4/5 frames 20 play false
Computed 21 frame morph #5
> close #5
> morph #1/0#4/10 frames 20 play false same true
No atoms matched
> morph #1/0,#4/10 frames 20 play False same true
Missing or invalid "structures" argument: only initial part "#1/0" of atom
specifier valid
> select #1/0
3220 atoms, 3268 bonds, 2 pseudobonds, 406 residues, 2 models selected
> morph #1/0#4/10 frames 20 play false same true
No atoms matched
> select #4/0
Nothing selected
> morph #1/4#4/4 frames 20 play false same true
Computed 41 frame morph #5
> close #5
> morph #1/5#4/5 frames 20 play false same true
Computed 21 frame morph #5
> morph #1/6#4/6 frames 20 play false same true
Computed 21 frame morph #6
> morph #1/7#4/7 frames 20 play false same true
Computed 21 frame morph #7
> morph #1/8#4/8 frames 20 play false same true
Computed 21 frame morph #8
> morph #1/9#4/9 frames 20 play false same true
Computed 21 frame morph #9
> morph #1/0#4/10 frames 20 play false same true
No atoms matched
> hide #9 models
> show #9 models
> show #!4.14 models
> morph #1/g#4/g frames 20 play false same true
No atoms matched
> hide #4.9 models
> show #4.9 models
> morph #1/g#4.9/g frames 20 play false same true
Computed 21 frame morph #10
> morph #1/12#4/12 frames 20 play false same true
Computed 21 frame morph #11
> morph #1/0#4.1/10 frames 20 play false same true
No atoms matched
> morph #1/m#4/m frames 20 play false same true
Computed 21 frame morph #12
> morph #1.1/0#4/10 frames 20 play false same true
No atoms matched
> select #1.1/0:435
4 atoms, 3 bonds, 1 residue, 1 model selected
> select up
150 atoms, 150 bonds, 20 residues, 1 model selected
> select up
3220 atoms, 3268 bonds, 406 residues, 1 model selected
> morph #1.1/0#4.1/10 frames 20 play false same true
No atoms matched
> morph sel#4.1/10 frames 20 play False same true
Missing or invalid "structures" argument: only initial part "sel" of atom
specifier valid
> morph sel #4.1/10 frames 20 play False same true
Expected a keyword
> morph #3/1#4/1 frames 20 play false same true
Computed 21 frame morph #13
> morph #3/2#4/2 frames 20 play false same true
Computed 21 frame morph #14
> morph #3/3#4/3 frames 20 play false same true
Computed 21 frame morph #15
> morph #3/4#4/4 frames 20 play false same true
Computed 41 frame morph #16
> close #16
> show #!4.14 models
> morph #3/4#4.14/4 frames 20 play false same true
Computed 21 frame morph #16
> morph #3/5#4/5 frames 20 play false same true
Computed 21 frame morph #17
> morph #3/6#4/6 frames 20 play false same true
Computed 21 frame morph #18
> morph #3/8#4/8 frames 20 play false same true
Require at least 2 structures for morph
> morph #3/g#4.15/g frames 20 play false same true
Computed 21 frame morph #19
> close #19
QWindowsWindow::setGeometry: Unable to set geometry 1920x1018+0+23 (frame:
1936x1057-8-8) on QWidgetWindow/"MainWindowClassWindow" on "\\\\.\DISPLAY1".
Resulting geometry: 1920x1017+0+23 (frame: 1936x1056-8-8) margins: 8, 31, 8, 8
minimum size: 394x1018 MINMAXINFO maxSize=0,0 maxpos=0,0 mintrack=410,1057
maxtrack=0,0)
> morph #3/g#4.15/g frames 20 play false same true
Computed 21 frame morph #19
QWindowsWindow::setGeometry: Unable to set geometry 1920x1069+0+23 (frame:
1936x1108-8-8) on QWidgetWindow/"MainWindowClassWindow" on "\\\\.\DISPLAY1".
Resulting geometry: 1920x1017+0+23 (frame: 1936x1056-8-8) margins: 8, 31, 8, 8
minimum size: 394x1069 MINMAXINFO maxSize=0,0 maxpos=0,0 mintrack=410,1108
maxtrack=0,0)
> view two
> morph #3/g#4.15/g frames 20 play false same true
Computed 21 frame morph #20
> close #19-20
> show #4.9 models
> show #!4.10 models
> hide #4.9 models
> hide #!4.10 models
> show #4.15 models
> show #3.7 models
> morph #3/g#4.15/g frames 20 play false
Computed 21 frame morph #19
> show #4.15 models
> hide #4.15 models
> show #!4.14 models
> hide #!4.14 models
> show #4.13 models
> hide #4.13 models
> show #!4.12 models
> hide #!4.12 models
> show #!4.11 models
> hide #!4.11 models
> show #!4.10 models
> hide #!4.10 models
> show #4.9 models
> hide #4.9 models
> show #4.8 models
> hide #4.8 models
> show #4.7 models
> hide #4.7 models
> show #!4.6 models
> hide #!4.6 models
> show #4.5 models
> hide #4.5 models
> show #4.4 models
> hide #4.4 models
> show #4.3 models
> hide #4.3 models
> show #4.3 models
> show #!3.4 models
> hide #!3.4 models
> hide #!14 models
> show #!14 models
> hide #!17 models
> show #!17 models
> hide #!12 models
> show #!12 models
> hide #!11 models
> show #!11 models
> hide #10 models
> show #10 models
> hide #9 models
> show #9 models
> hide #8 models
> show #8 models
> hide #!7 models
> show #!7 models
> hide #6 models
> show #6 models
> hide #6 models
> show #6 models
> hide #6 models
> show #6 models
> hide #5 models
> show #5 models
> hide #!18 models
> show #!18 models
> hide #!18 models
> show #!18 models
> hide #!18 models
> show #!18 models
> hide #!18 models
> show #!18 models
> view matrix models #1.1,1,0,0,-0.27987,0,1,0,3.2754,0,0,1,0.97588
> view two
> color #17 #aa00ff transparency 0
> color #17 #aa55ff transparency 0
> color #17 #0055ff transparency 0
> color #17 #55557f transparency 0
> hide #!17 models
> show #!17 models
> hide #!17 models
> show #!17 models
> hide #!18 models
> show #!18 models
> hide #!18 models
> show #!18 models
> hide #19 models
> show #19 models
> hide #!16 models
> show #!16 models
> hide #15 models
> show #15 models
> hide #!14 models
> show #!14 models
> hide #!13 models
> show #!13 models
> hide #!12 models
> show #!12 models
> hide #!11 models
> show #!11 models
> hide #10 models
> show #10 models
> hide #9 models
> show #9 models
> hide #8 models
> show #8 models
> hide #!7 models
> show #!7 models
> hide #6 models
> show #6 models
> hide #5 models
> show #5 models
> select up
27042 atoms, 27661 bonds, 3350 residues, 10 models selected
> select up
27042 atoms, 27661 bonds, 3350 residues, 11 models selected
> select clear
> morph #3/4#4.3/4 frames 20 play false
Computed 21 frame morph #20
> show #!3.4 models
> close #20
> morph #1/4#4.3/4 frames 20 play false
Computed 21 frame morph #20
> hide #!3.4 models
> morph #1/0#4.1/10 frames 20 play false
Computed 21 frame morph #21
> struts #5
Created 1350 struts for #5, max length 7, max loop length 30
> close #22
> coordset #5 1
> coordset #5 10
> coordset #5 21
> select clear
> struts #6-21
Created 26803 struts for #6-21, max length 7, max loop length 30
> close #22
> save C:/Users/jason431/Desktop/RESCmovie/tile-4.cxs includeMaps true
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "begin save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "begin save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "begin save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "begin save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "begin save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "begin save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "begin save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "begin save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "begin save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "begin save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "begin save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "begin save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "end save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "end save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "end save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "end save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "end save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "end save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "end save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "end save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "end save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "end save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "end save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "end save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
> save C:/Users/jason431/Desktop/RESCmovie/tile-5.cxs includeMaps true
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "begin save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "begin save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "begin save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "begin save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "begin save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "begin save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "begin save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "begin save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "begin save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "begin save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "begin save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "begin save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "end save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "end save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "end save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "end save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "end save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "end save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "end save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "end save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "end save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "end save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "end save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 79, in <lambda>
lambda *args, qual=ses_func: self._ses_call(qual)))
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1885, in _ses_call
f(self._c_pointer)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute '_c_pointer'
Error processing trigger "end save session":
AttributeError: 'Structure' object has no attribute '_c_pointer'
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\attributes.py", line 85, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
OpenGL version: 3.3.0 NVIDIA 441.12
OpenGL renderer: Quadro M4000/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: Hewlett-Packard
Model: HP Z440 Workstation
OS: Microsoft Windows 10 Pro (Build 19044)
Memory: 17,092,194,304
MaxProcessMemory: 137,438,953,344
CPU: 8 Intel(R) Xeon(R) CPU E5-1630 v4 @ 3.70GHz
OSLanguage: en-US
Locale: ('en_US', 'cp1252')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2021.10.8
cftime: 1.5.1.1
charset-normalizer: 2.0.9
ChimeraX-AddCharge: 1.2.2
ChimeraX-AddH: 2.1.11
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.2.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.31
ChimeraX-AtomicLibrary: 4.2
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.0
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.6.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.2
ChimeraX-Clipper: 0.17.0
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5
ChimeraX-CommandLine: 1.1.5
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.3
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.5
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ISOLDE: 1.3
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.4
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.4
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.4
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.2.6
ChimeraX-ModelPanel: 1.2.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.7
ChimeraX-PDB: 2.6.5
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.4.6
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.6.1
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.13.7
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0.1
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
comtypes: 1.1.10
cxservices: 1.1
cycler: 0.11.0
Cython: 0.29.24
decorator: 5.1.0
docutils: 0.17.1
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 3.6.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.21
imagecodecs: 2021.4.28
imagesize: 1.3.0
ipykernel: 5.5.5
ipython: 7.23.1
ipython-genutils: 0.2.0
jedi: 0.18.0
Jinja2: 3.0.1
jupyter-client: 6.1.12
jupyter-core: 4.9.1
kiwisolver: 1.3.2
lxml: 4.6.3
lz4: 3.1.3
MarkupSafe: 2.0.1
matplotlib: 3.4.3
matplotlib-inline: 0.1.3
msgpack: 1.0.2
netCDF4: 1.5.7
networkx: 2.6.3
numexpr: 2.8.0
numpy: 1.21.2
openvr: 1.16.801
packaging: 21.3
ParmEd: 3.2.0
parso: 0.8.3
pickleshare: 0.7.5
Pillow: 8.3.2
pip: 21.2.4
pkginfo: 1.7.1
prompt-toolkit: 3.0.23
psutil: 5.8.0
pycollada: 0.7.1
pydicom: 2.1.2
Pygments: 2.10.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.6
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.2
pytz: 2021.3
pywin32: 228
pyzmq: 22.3.0
qtconsole: 5.1.1
QtPy: 1.11.3
RandomWords: 0.3.0
requests: 2.26.0
scipy: 1.7.1
setuptools: 57.5.0
sfftk-rw: 0.7.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 4.2.0
sphinx-autodoc-typehints: 1.12.0
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2021.4.8
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.1.1
urllib3: 1.26.7
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.0
wheel-filename: 1.3.0
WMI: 1.5.1
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