Changes between Initial Version and Version 1 of Ticket #7358, comment 2


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Timestamp:
Jul 29, 2022, 3:58:41 PM (3 years ago)
Author:
Tom Goddard

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  • Ticket #7358, comment 2

    initial v1  
    33https://www.ebi.ac.uk/Tools/sss/fasta/
    44
    5 to search for AlphaFold models.  This uses the FASTA algorithm for searching (similar speed to BLAST) and offers about 10 other old choices, but not mmseqs2.  I've started a test run searching alphafold db using their service to see how long it takes.
     5to search for AlphaFold models.  This uses the FASTA algorithm for searching (similar speed to BLAST) and offers about 10 other old choices, but not mmseqs2.  I've started a test run searching alphafold db using their service to see how long it takes.  I'll report the time here when it finishes.
     6
     7Should also try a UniRef90 search.  It probably won't be any faster, but AlphaFold DB mostly covers UniRef90 and possibly EBI has UniRef90 search more heavily optimized.