Changes between Version 2 and Version 3 of Ticket #7358, comment 2


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Timestamp:
Jul 29, 2022, 4:07:51 PM (3 years ago)
Author:
Tom Goddard

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  • Ticket #7358, comment 2

    v2 v3  
    1515}}}
    1616
     17using this command
     18
     19{{{
     20cat fasta-E20220729-235004-0236-19789909-p1m.sequence | $APPBIN/fasta:36.3.8h /fasta36 -l $DATA_CURRENT/fastacfg/fasta3db -L -T 32 -p -s BL50 -f -10 -g -2 -E "10.0 -1.0" -F 0.0 -b 50 -d 50 -m "F9B fasta-E20220729-235004-0236-19789909-p1m.m9" -m "F10 fasta-E20220729-235004-0236-19789909-p1m.m10" -z 1 \@:1- +afdb+ 2
     21}}}
     22
    1723Should also try a UniRef90 search.  It probably won't be any faster, but AlphaFold DB mostly covers UniRef90 and possibly EBI has UniRef90 search more heavily optimized.