Changes between Version 4 and Version 5 of Ticket #7358, comment 2


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Timestamp:
Jul 29, 2022, 4:28:34 PM (3 years ago)
Author:
Tom Goddard

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  • Ticket #7358, comment 2

    v4 v5  
    2121}}}
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    23 I tried the same search of AFDB using their BLAST server.  Will put results here.
     23I tried the same search of AFDB using their BLAST server, took 13 minutes.
     24
     25{{{
     26Effective search space used: 1687989905136
     27
     28  Database: afdb
     29    Posted date:  Jul 21, 2022  5:16 PM
     30  Number of letters in database: 69,001,092,509
     31  Number of sequences in database:  214,684,311
     32}}}
     33
     34using command
     35
     36{{{
     37$APPBIN/ncbi-blast-2.9.0+/bin/blastp -db "afdb" -query ncbiblast-E20220730-000943-0597-32032673-p2m.sequence -num_threads 32 -outfmt 11 -out ncbiblast-E20220730-000943-0597-32032673-p2m.archive -matrix BLOSUM62 -max_target_seqs 50 -evalue 10 -max_hsps 100 -gapopen 11 -gapextend 1 -seg no -word_size 6 -comp_based_stats F
     38}}}
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