Changes between Initial Version and Version 1 of Ticket #7358, comment 3


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Timestamp:
Aug 1, 2022, 7:22:57 PM (3 years ago)
Author:
Tom Goddard

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  • Ticket #7358, comment 3

    initial v1  
    55Crick CentOS 1.70 seconds
    66
    7 The first run on crick took 13 seconds.  The Mac run without the index took 13 seconds.  If all 3 computers are caching the database index it is not clear why they differ by a factor of 10 in speed.
     7The first run on crick took 13 seconds.  The Mac run without the index took 13 seconds.  If all 3 computers are caching the database index it is not clear why they differ by a factor of 10 in speed.  Probably the very slow Crick is because of the beegfs file system.
     8
     9Next I am going to try the search of the 214 million sequence AlphaFold database on minsky and on crick.  Actually probably don't have enough disk space on minsky, index will take about 800 Gbytes and only have 700 Gbytes free because AlphaFold databases take up most of the 4 TB NVMe drive.