Changes between Version 4 and Version 5 of Ticket #7358, comment 3


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Timestamp:
Aug 1, 2022, 11:23:41 PM (3 years ago)
Author:
Tom Goddard

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  • Ticket #7358, comment 3

    v4 v5  
    99Next I am going to try the search of the 214 million sequence AlphaFold database on minsky and on crick.  Actually probably don't have enough disk space on minsky, index will take about 800 Gbytes and only have 700 Gbytes free because AlphaFold databases take up most of the 4 TB NVMe drive.  Could try reducing to 100 million sequences for test on minsky.
    1010
    11 On crick, 214 million sequence search took 810 seconds (13.5 minutes) on the first run.  On second run took 568 seconds (9.5 minutes).
     11On crick, 214 million sequence search took 810 seconds (13.5 minutes) on the first run. On second run took 568 seconds (9.5 minutes).  Sensitivity was 5.7.  Running with sensitivity 1 took 915 seconds first run, 597 seconds on second run. Strange that low sensitivity is slower.  Search on 100 million sequences with default sensitivity (5.7) took 315 seconds on first run, 304 seconds on second run.